Citrus Sinensis ID: 028792

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200---
Protein Sequence
MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPVNQKSGCCST
Secondary Structure (PSIPRED)
ccccccEEEEEEEEccccccHHHHHHHHccccccccccccccEEcEEEEEEEccEEEEEEEEEcccccccHHHHHHHcccccEEEEEEEcccHHHHHHHHHHHHHHHHHcccccEEEEEEEcccccccccccHHHHHHHHHHHcccEEEccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHccEEEEEEEEEcccccHHHHHHHHHHccccccccccccEEEEEEEEEEccEEEEEEEEEEcccHHHHHHHHHHHccccEEEEEEEcccHHHHHHHHHHHHHHHHHcccccEEEEEEEccccHHHccccHHHHHHHHHHcccEEEEccccccccHHHHHHHHHHHcHHHHcccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MNNEYDYLFKLLLIgdsgvgksCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYdvtdqesfNNVKQWLNEIDRYASENVNKLLvgnkcdltanKVVSYETAKAFadeigipfmetsaKSATNVEQAFMAMAASIKNrmasqpasnnarpptvqirgqpvnqksgccst
Flexible Loop (DISEMBL)
MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGktiklqiwdtagqERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNarpptvqirgqpvnqksgccst
Low Complexity Region (SEG)
MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPVNQKSGCCST
Disordered region (IsUnstruct)
****YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFME******************************************************
Disordered Region (DISOPRED)
*NNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI****************************SGCCS*
Disordered Region (DISEMBL)
MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKN**************TVQIRG************
Disordered Region (DISPRO)
*NNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMA*****************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPVNQKSGCCST
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	203	2.2.26 [Sep-21-2011]
Q05737	203	GTP-binding protein YPTM2	N/A	no	1.0	1.0	0.916	1e-109
P28188	203	Ras-related protein RABD2	yes	no	1.0	1.0	0.906	1e-108
Q9SEH3	202	Ras-related protein RABD2	no	no	0.995	1.0	0.896	1e-106
P40392	202	Ras-related protein RIC1	no	no	0.995	1.0	0.891	1e-105
Q9FPJ4	202	Ras-related protein RABD2	no	no	0.995	1.0	0.896	1e-105
Q39571	203	GTP-binding protein YPTC1	N/A	no	0.990	0.990	0.846	1e-96
Q6NYB7	205	Ras-related protein Rab-1	yes	no	0.990	0.980	0.805	5e-93
P62821	205	Ras-related protein Rab-1	yes	no	0.990	0.980	0.805	5e-93
P62820	205	Ras-related protein Rab-1	yes	no	0.990	0.980	0.805	5e-93
P62822	205	Ras-related protein Rab-1	yes	no	0.990	0.980	0.805	5e-93

>sp|Q05737|YPTM2_MAIZE GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=2 SV=1

 Score =  393 bits (1009), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 186/203 (91%), Positives = 197/203 (97%)

Query: 1   MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ 60
           MN EYDYLFKLLLIGDSGVGKSCLLLRFADDSYL+SYISTIGVDFKIRTVEQDGKTIKLQ
Sbjct: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQ 60

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120
           IWDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWLNEIDRYAS+NVNKLLVG
Sbjct: 61  IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVG 120

Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASN 180
           NK DLTANKVV+ ETAKAFADE+GIPFMETSAK+ATNV+QAFMAMAASIK+RMASQPA+ 
Sbjct: 121 NKSDLTANKVVATETAKAFADEMGIPFMETSAKNATNVQQAFMAMAASIKDRMASQPAAA 180

Query: 181 NARPPTVQIRGQPVNQKSGCCST 203
           NARP TVQIRGQPVNQK+ CCS+
Sbjct: 181 NARPATVQIRGQPVNQKTSCCSS 203

Protein transport. Probably involved in vesicular traffic.
Zea mays (taxid: 4577)

>sp|P28188|RAD2A_ARATH Ras-related protein RABD2a OS=Arabidopsis thaliana GN=RABD2A PE=1 SV=3

 Score =  391 bits (1005), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 184/203 (90%), Positives = 194/203 (95%)

Query: 1   MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ 60
           MN EYDYLFKLLLIGDSGVGKSCLLLRF+DDSY+ESYISTIGVDFKIRTVEQDGKTIKLQ
Sbjct: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFSDDSYVESYISTIGVDFKIRTVEQDGKTIKLQ 60

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120
           IWDTAGQERFRTITSSYYRGAHGII+VYDVTD+ESFNNVKQWL+EIDRYAS+NVNKLLVG
Sbjct: 61  IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVG 120

Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASN 180
           NK DLT N+ + YETAKAFADEIGIPFMETSAK ATNVEQAFMAM+ASIK RMASQPA N
Sbjct: 121 NKSDLTENRAIPYETAKAFADEIGIPFMETSAKDATNVEQAFMAMSASIKERMASQPAGN 180

Query: 181 NARPPTVQIRGQPVNQKSGCCST 203
           NARPPTVQIRGQPV QK+GCCST
Sbjct: 181 NARPPTVQIRGQPVAQKNGCCST 203

Protein transport. Regulator of membrane traffic from the Golgi apparatus towards the endoplasmic reticulum (ER).

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SEH3|RAD2C_ARATH Ras-related protein RABD2c OS=Arabidopsis thaliana GN=RABD2C PE=1 SV=1

 Score =  382 bits (982), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 182/203 (89%), Positives = 193/203 (95%), Gaps = 1/203 (0%)

Query: 1   MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ 60
           MN EYDYLFKLLLIGDSGVGKSCLLLRFADDSYL+SYISTIGVDFKIRTVEQDGKTIKLQ
Sbjct: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQ 60

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120
           IWDTAGQERFRTITSSYYRGAHGIIV YDVTD ESFNNVKQWLNEIDRYASENVNKLLVG
Sbjct: 61  IWDTAGQERFRTITSSYYRGAHGIIVTYDVTDLESFNNVKQWLNEIDRYASENVNKLLVG 120

Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASN 180
           NKCDLT+ KVVS ETAKAFADE+GIPF+ETSAK+ATNVE+AFMAM A+IK RMASQPA  
Sbjct: 121 NKCDLTSQKVVSTETAKAFADELGIPFLETSAKNATNVEEAFMAMTAAIKTRMASQPA-G 179

Query: 181 NARPPTVQIRGQPVNQKSGCCST 203
            ++PPTVQIRGQPVNQ+SGCCS+
Sbjct: 180 GSKPPTVQIRGQPVNQQSGCCSS 202

Protein transport. Regulator of membrane traffic from the Golgi apparatus towards the endoplasmic reticulum (ER).

Arabidopsis thaliana (taxid: 3702)

>sp|P40392|RIC1_ORYSJ Ras-related protein RIC1 OS=Oryza sativa subsp. japonica GN=RIC1 PE=2 SV=2

 Score =  382 bits (980), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 180/202 (89%), Positives = 188/202 (93%)

Query: 1   MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ 60
           MN EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ
Sbjct: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ 60

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120
           IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG
Sbjct: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120

Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASN 180
           NKCDL  N+VVSYE  KA ADEIGIPF+ETSAK ATNVE+AFM MA  IKNRMASQPA+N
Sbjct: 121 NKCDLAENRVVSYEAGKALADEIGIPFLETSAKDATNVEKAFMTMAGEIKNRMASQPATN 180

Query: 181 NARPPTVQIRGQPVNQKSGCCS 202
            ++P TVQ+RGQPV Q+S CCS
Sbjct: 181 ASKPATVQMRGQPVAQQSSCCS 202

Possesses GTPase activity.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9FPJ4|RAD2B_ARATH Ras-related protein RABD2b OS=Arabidopsis thaliana GN=RABD2B PE=2 SV=1

 Score =  379 bits (973), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 182/203 (89%), Positives = 192/203 (94%), Gaps = 1/203 (0%)

Query: 1   MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ 60
           MN EYDYLFKLLLIGDSGVGKSCLLLRFADDSYL+SYISTIGVDFKIRTVEQDGKTIKLQ
Sbjct: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQ 60

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120
           IWDTAGQERFRTITSSYYRGAHGIIV YDVTD ESFNNVKQWLNEIDRYASENVNKLLVG
Sbjct: 61  IWDTAGQERFRTITSSYYRGAHGIIVTYDVTDLESFNNVKQWLNEIDRYASENVNKLLVG 120

Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASN 180
           NK DLT+ KVVS ETAKAFADE+GIPF+ETSAK+ATNVE+AFMAM A+IK RMASQPA  
Sbjct: 121 NKNDLTSQKVVSTETAKAFADELGIPFLETSAKNATNVEEAFMAMTAAIKTRMASQPAG- 179

Query: 181 NARPPTVQIRGQPVNQKSGCCST 203
            A+PPTVQIRGQPVNQ+SGCCS+
Sbjct: 180 GAKPPTVQIRGQPVNQQSGCCSS 202

Protein transport. Regulator of membrane traffic from the Golgi apparatus towards the endoplasmic reticulum (ER).

Arabidopsis thaliana (taxid: 3702)

>sp|Q39571|YPTC1_CHLRE GTP-binding protein YPTC1 OS=Chlamydomonas reinhardtii GN=YPTC1 PE=3 SV=1

 Score =  352 bits (902), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 171/202 (84%), Positives = 179/202 (88%), Gaps = 1/202 (0%)

Query: 1   MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ 60
           MN EYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRTVE DGK IKLQ
Sbjct: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKVIKLQ 60

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120
           IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG
Sbjct: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120

Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASN 180
           NK DLT+ KVV Y  AKAFADEIGIPF+ETSAK+ATNVEQAFM MAA IKNRMASQP   
Sbjct: 121 NKSDLTSKKVVEYSVAKAFADEIGIPFLETSAKNATNVEQAFMTMAAEIKNRMASQPIPT 180

Query: 181 NARPPTVQIR-GQPVNQKSGCC 201
            A  P V+ + G+P+N KS  C
Sbjct: 181 KAGGPVVRPQEGKPINSKSSSC 202

Protein transport. Probably involved in vesicular traffic.

Chlamydomonas reinhardtii (taxid: 3055)

>sp|Q6NYB7|RAB1A_RAT Ras-related protein Rab-1A OS=Rattus norvegicus GN=Rab1A PE=1 SV=3

 Score =  340 bits (871), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 162/201 (80%), Positives = 171/201 (85%)

Query: 1   MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ 60
           MN EYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQ
Sbjct: 4   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 63

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120
           IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWL EIDRYASENVNKLLVG
Sbjct: 64  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG 123

Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASN 180
           NKCDLT  KVV Y TAK FAD +GIPF+ETSAK+ATNVEQ+FM MAA IK RM     + 
Sbjct: 124 NKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAG 183

Query: 181 NARPPTVQIRGQPVNQKSGCC 201
            A    V+I+  PV Q  G C
Sbjct: 184 GAEKSNVKIQSTPVKQSGGGC 204

Probably required for transit of protein from the ER through Golgi compartment. Binds GTP and GDP and possesses intrinsic GTPase activity.

Rattus norvegicus (taxid: 10116)

>sp|P62821|RAB1A_MOUSE Ras-related protein Rab-1A OS=Mus musculus GN=Rab1A PE=1 SV=3

 Score =  340 bits (871), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 162/201 (80%), Positives = 171/201 (85%)

Query: 1   MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ 60
           MN EYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQ
Sbjct: 4   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 63

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120
           IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWL EIDRYASENVNKLLVG
Sbjct: 64  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG 123

Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASN 180
           NKCDLT  KVV Y TAK FAD +GIPF+ETSAK+ATNVEQ+FM MAA IK RM     + 
Sbjct: 124 NKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAG 183

Query: 181 NARPPTVQIRGQPVNQKSGCC 201
            A    V+I+  PV Q  G C
Sbjct: 184 GAEKSNVKIQSTPVKQSGGGC 204

Probably required for transit of protein from the ER through Golgi compartment. Binds GTP and GDP and possesses intrinsic GTPase activity.

Mus musculus (taxid: 10090)

>sp|P62820|RAB1A_HUMAN Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1A PE=1 SV=3

 Score =  340 bits (871), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 162/201 (80%), Positives = 171/201 (85%)

Query: 1   MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ 60
           MN EYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQ
Sbjct: 4   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 63

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120
           IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWL EIDRYASENVNKLLVG
Sbjct: 64  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG 123

Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASN 180
           NKCDLT  KVV Y TAK FAD +GIPF+ETSAK+ATNVEQ+FM MAA IK RM     + 
Sbjct: 124 NKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAG 183

Query: 181 NARPPTVQIRGQPVNQKSGCC 201
            A    V+I+  PV Q  G C
Sbjct: 184 GAEKSNVKIQSTPVKQSGGGC 204

Probably required for transit of protein from the ER through Golgi compartment. Binds GTP and GDP and possesses intrinsic GTPase activity.

Homo sapiens (taxid: 9606)

>sp|P62822|RAB1A_CANFA Ras-related protein Rab-1A OS=Canis familiaris GN=RAB1A PE=1 SV=3

 Score =  340 bits (871), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 162/201 (80%), Positives = 171/201 (85%)

Query: 1   MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ 60
           MN EYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQ
Sbjct: 4   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 63

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120
           IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWL EIDRYASENVNKLLVG
Sbjct: 64  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG 123

Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASN 180
           NKCDLT  KVV Y TAK FAD +GIPF+ETSAK+ATNVEQ+FM MAA IK RM     + 
Sbjct: 124 NKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAG 183

Query: 181 NARPPTVQIRGQPVNQKSGCC 201
            A    V+I+  PV Q  G C
Sbjct: 184 GAEKSNVKIQSTPVKQSGGGC 204

Probably required for transit of protein from the ER through Golgi compartment. Binds GTP and GDP and possesses intrinsic GTPase activity.

Canis familiaris (taxid: 9615)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	203
224074217	203	predicted protein [Populus trichocarpa]	1.0	1.0	0.975	1e-114
390979747	203	small GTPase [Hevea brasiliensis]	1.0	1.0	0.960	1e-113
255581964	203	protein with unknown function [Ricinus c	1.0	1.0	0.970	1e-112
255539911	203	protein with unknown function [Ricinus c	1.0	1.0	0.960	1e-112
359806422	202	uncharacterized protein LOC100783333 [Gl	0.995	1.0	0.965	1e-111
225454983	203	PREDICTED: GTP-binding protein YPTM2 [Vi	1.0	1.0	0.945	1e-111
388520849	202	unknown [Lotus japonicus]	0.995	1.0	0.965	1e-111
359497565	207	PREDICTED: GTP-binding protein YPTM2 [Vi	0.975	0.956	0.974	1e-111
1370166	202	RAB1C [Lotus japonicus]	0.995	1.0	0.960	1e-111
1616614	203	small GTP-binding protein [Nicotiana plu	0.990	0.990	0.960	1e-111

>gi|224074217|ref|XP_002304305.1| predicted protein [Populus trichocarpa] gi|118485751|gb|ABK94725.1| unknown [Populus trichocarpa] gi|222841737|gb|EEE79284.1| predicted protein [Populus trichocarpa]

 Score =  414 bits (1065), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 198/203 (97%), Positives = 200/203 (98%)

Query: 1   MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ 60
           MN EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ
Sbjct: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ 60

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120
           IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG
Sbjct: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120

Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASN 180
           NKCDLTANKVVSYETAKAFADEIGIPFMETSAK+ATNVEQAFMAMAA IKNRMASQPA N
Sbjct: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKNATNVEQAFMAMAAEIKNRMASQPAMN 180

Query: 181 NARPPTVQIRGQPVNQKSGCCST 203
           NARPPTVQIRGQPVNQKSGCCS+
Sbjct: 181 NARPPTVQIRGQPVNQKSGCCSS 203

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|390979747|gb|AFM30910.1| small GTPase [Hevea brasiliensis]

 Score =  412 bits (1058), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 195/203 (96%), Positives = 201/203 (99%)

Query: 1   MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ 60
           MN EYDYLFKLLLIGDSGVGKSCLLLRFADDSYL+SYISTIGVDFKIRTVEQDGKTIKLQ
Sbjct: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQ 60

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120
           IWDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG
Sbjct: 61  IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120

Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASN 180
           NKCDLTANKVVSYETAKAFADEIGIPFMETSAK+ATNVE+AFMAMAA IKNRMASQPA+N
Sbjct: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKNATNVEEAFMAMAADIKNRMASQPAAN 180

Query: 181 NARPPTVQIRGQPVNQKSGCCST 203
           NARPPTVQIRGQPVNQKSGCCS+
Sbjct: 181 NARPPTVQIRGQPVNQKSGCCSS 203

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581964|ref|XP_002531780.1| protein with unknown function [Ricinus communis] gi|223528573|gb|EEF30594.1| protein with unknown function [Ricinus communis]

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 197/203 (97%), Positives = 199/203 (98%)

Query: 1   MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ 60
           MN EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ
Sbjct: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ 60

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120
           IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG
Sbjct: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120

Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASN 180
           NK DLTANKVVSYETAKAFADEIGIPFMETSAK+ATNVEQAFMAMAA IKNRMASQPA N
Sbjct: 121 NKNDLTANKVVSYETAKAFADEIGIPFMETSAKNATNVEQAFMAMAAEIKNRMASQPAMN 180

Query: 181 NARPPTVQIRGQPVNQKSGCCST 203
           NARPPTVQIRGQPVNQKSGCCS+
Sbjct: 181 NARPPTVQIRGQPVNQKSGCCSS 203

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539911|ref|XP_002511020.1| protein with unknown function [Ricinus communis] gi|223550135|gb|EEF51622.1| protein with unknown function [Ricinus communis]

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 195/203 (96%), Positives = 200/203 (98%)

Query: 1   MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ 60
           MN EYDYLFKLLLIGDSGVGKSCLLLRFADDSYL+SYISTIGVDFKIRTVEQDGKTIKLQ
Sbjct: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQ 60

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120
           IWDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG
Sbjct: 61  IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120

Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASN 180
           NK DLTANKVVSYETAKAFADEIGIPFMETSAK+ATNVEQAFMAMAA IKNRMASQPA+N
Sbjct: 121 NKSDLTANKVVSYETAKAFADEIGIPFMETSAKNATNVEQAFMAMAADIKNRMASQPAAN 180

Query: 181 NARPPTVQIRGQPVNQKSGCCST 203
           NARPPTVQIRGQPVNQKSGCCS+
Sbjct: 181 NARPPTVQIRGQPVNQKSGCCSS 203

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806422|ref|NP_001241498.1| uncharacterized protein LOC100783333 [Glycine max] gi|255636244|gb|ACU18462.1| unknown [Glycine max]

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 196/203 (96%), Positives = 199/203 (98%), Gaps = 1/203 (0%)

Query: 1   MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ 60
           MN EYDYLFKLLLIGDSGVGKSCLLLRFADDSYL+SYISTIGVDFKIRTVEQDGKTIKLQ
Sbjct: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQ 60

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120
           IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG
Sbjct: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120

Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASN 180
           NKCDLTANKVVSYETAKAFADEIGIPFMETSAK+ATNVEQAFMAMAA IKNRMASQP  N
Sbjct: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKNATNVEQAFMAMAAEIKNRMASQPV-N 179

Query: 181 NARPPTVQIRGQPVNQKSGCCST 203
           NARPPTVQIRGQPVNQK+GCCST
Sbjct: 180 NARPPTVQIRGQPVNQKAGCCST 202

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225454983|ref|XP_002281150.1| PREDICTED: GTP-binding protein YPTM2 [Vitis vinifera] gi|297744977|emb|CBI38569.3| unnamed protein product [Vitis vinifera]

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 192/203 (94%), Positives = 199/203 (98%)

Query: 1   MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ 60
           MN EYDYLFKLLLIGDSGVGKSCLLLRFADDSYL+SYISTIGVDFKIRTVEQDGKTIKLQ
Sbjct: 1   MNQEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQ 60

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120
           IWDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG
Sbjct: 61  IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120

Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASN 180
           NKCDLTANKVVSYETAKAFADEIGIPFMETSAK+ATNVEQAFMAMAA IK RMASQPA N
Sbjct: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKNATNVEQAFMAMAADIKTRMASQPAMN 180

Query: 181 NARPPTVQIRGQPVNQKSGCCST 203
           NARPP+VQ++GQPVNQKSGCCS+
Sbjct: 181 NARPPSVQLQGQPVNQKSGCCSS 203

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388520849|gb|AFK48486.1| unknown [Lotus japonicus]

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 196/203 (96%), Positives = 199/203 (98%), Gaps = 1/203 (0%)

Query: 1   MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ 60
           MN EYDYLFKLLLIGDSGVGKSCLLLRFADDSYL+SYISTIGVDFKIRTVEQDGKTIKLQ
Sbjct: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQ 60

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120
           IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG
Sbjct: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120

Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASN 180
           NKCDLTANKVVSYETAKAFADEIGIPFMETSAK+ATNVEQAFMAMAA IKNRMASQP  N
Sbjct: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKNATNVEQAFMAMAAEIKNRMASQPV-N 179

Query: 181 NARPPTVQIRGQPVNQKSGCCST 203
           NARPPTVQIRGQPVNQKSGCCS+
Sbjct: 180 NARPPTVQIRGQPVNQKSGCCSS 202

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359497565|ref|XP_002265463.2| PREDICTED: GTP-binding protein YPTM2 [Vitis vinifera]

 Score =  405 bits (1040), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 193/198 (97%), Positives = 195/198 (98%)

Query: 6   DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTA 65
           DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTA
Sbjct: 10  DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTA 69

Query: 66  GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL 125
           GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL
Sbjct: 70  GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL 129

Query: 126 TANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPP 185
           TANKVVSYETAKAFADEIGIPFMETSAK+ATNVEQAFMAMAA IKNRMASQPA N ARPP
Sbjct: 130 TANKVVSYETAKAFADEIGIPFMETSAKNATNVEQAFMAMAAEIKNRMASQPAMNTARPP 189

Query: 186 TVQIRGQPVNQKSGCCST 203
           TVQIRGQPVNQKSGCCS+
Sbjct: 190 TVQIRGQPVNQKSGCCSS 207

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1370166|emb|CAA98160.1| RAB1C [Lotus japonicus]

 Score =  405 bits (1040), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 195/203 (96%), Positives = 198/203 (97%), Gaps = 1/203 (0%)

Query: 1   MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ 60
           MN EYDYLFKLLLIGDSGVGKSCLLLRFADDSYL+SYISTIGVDFKIRTVEQDGKTIKLQ
Sbjct: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQ 60

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120
           IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG
Sbjct: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120

Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASN 180
           NKCDLT NKVVSYETAKAFADEIGIPFMETSAK+ATNVEQAFMAMAA IKNRMASQP  N
Sbjct: 121 NKCDLTENKVVSYETAKAFADEIGIPFMETSAKNATNVEQAFMAMAAEIKNRMASQPV-N 179

Query: 181 NARPPTVQIRGQPVNQKSGCCST 203
           NARPPTVQIRGQPVNQKSGCCS+
Sbjct: 180 NARPPTVQIRGQPVNQKSGCCSS 202

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1616614|emb|CAA69701.1| small GTP-binding protein [Nicotiana plumbaginifolia]

 Score =  404 bits (1039), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 193/201 (96%), Positives = 198/201 (98%)

Query: 1   MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ 60
           MN EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ
Sbjct: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ 60

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120
           IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWL+EIDRYAS++VNKLLVG
Sbjct: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLSEIDRYASDSVNKLLVG 120

Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASN 180
           NKCDLTA KVVS ETA+AFADEIGIPFMETSAK+ATNVEQAFMAMAASIKNRMASQPASN
Sbjct: 121 NKCDLTAQKVVSTETAQAFADEIGIPFMETSAKNATNVEQAFMAMAASIKNRMASQPASN 180

Query: 181 NARPPTVQIRGQPVNQKSGCC 201
           NARPPTVQIRGQPVNQKSGCC
Sbjct: 181 NARPPTVQIRGQPVNQKSGCC 201

Source: Nicotiana plumbaginifolia

Species: Nicotiana plumbaginifolia

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	203
TAIR|locus:2205603	203	RA-5 "RAS 5" [Arabidopsis thal	1.0	1.0	0.906	6.6e-97
TAIR|locus:2129161	202	RAB1C "RAB GTPase homolog 1C"	0.995	1.0	0.896	1.1e-94
TAIR|locus:2171484	202	RAB1A "RAB GTPase homolog 1A"	0.995	1.0	0.896	1e-93
UNIPROTKB|F1NNL7	205	RAB1A "Uncharacterized protein	0.990	0.980	0.811	4.4e-84
UNIPROTKB|A1L528	205	RAB1A "RAB1A, member RAS oncog	0.990	0.980	0.806	1.2e-83
UNIPROTKB|F1Q0H3	250	RAB1A "Ras-related protein Rab	0.990	0.804	0.806	1.2e-83
UNIPROTKB|P62822	205	RAB1A "Ras-related protein Rab	0.990	0.980	0.806	1.2e-83
UNIPROTKB|P62820	205	RAB1A "Ras-related protein Rab	0.990	0.980	0.806	1.2e-83
UNIPROTKB|F2Z5U4	202	RAB1A "Ras-related protein Rab	0.990	0.995	0.806	1.2e-83
MGI|MGI:97842	205	Rab1 "RAB1, member RAS oncogen	0.990	0.980	0.806	1.2e-83

TAIR|locus:2205603 RA-5 "RAS 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 963 (344.1 bits), Expect = 6.6e-97, P = 6.6e-97
 Identities = 184/203 (90%), Positives = 194/203 (95%)

Query:     1 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ 60
             MN EYDYLFKLLLIGDSGVGKSCLLLRF+DDSY+ESYISTIGVDFKIRTVEQDGKTIKLQ
Sbjct:     1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFSDDSYVESYISTIGVDFKIRTVEQDGKTIKLQ 60

Query:    61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120
             IWDTAGQERFRTITSSYYRGAHGII+VYDVTD+ESFNNVKQWL+EIDRYAS+NVNKLLVG
Sbjct:    61 IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVG 120

Query:   121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASN 180
             NK DLT N+ + YETAKAFADEIGIPFMETSAK ATNVEQAFMAM+ASIK RMASQPA N
Sbjct:   121 NKSDLTENRAIPYETAKAFADEIGIPFMETSAKDATNVEQAFMAMSASIKERMASQPAGN 180

Query:   181 NARPPTVQIRGQPVNQKSGCCST 203
             NARPPTVQIRGQPV QK+GCCST
Sbjct:   181 NARPPTVQIRGQPVAQKNGCCST 203

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IMP;IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0000139 "Golgi membrane" evidence=IDA

GO:0032588 "trans-Golgi network membrane" evidence=IDA

TAIR|locus:2129161 RAB1C "RAB GTPase homolog 1C" [Arabidopsis thaliana (taxid:3702)]

 Score = 942 (336.7 bits), Expect = 1.1e-94, P = 1.1e-94
 Identities = 182/203 (89%), Positives = 193/203 (95%)

Query:     1 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ 60
             MN EYDYLFKLLLIGDSGVGKSCLLLRFADDSYL+SYISTIGVDFKIRTVEQDGKTIKLQ
Sbjct:     1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQ 60

Query:    61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120
             IWDTAGQERFRTITSSYYRGAHGIIV YDVTD ESFNNVKQWLNEIDRYASENVNKLLVG
Sbjct:    61 IWDTAGQERFRTITSSYYRGAHGIIVTYDVTDLESFNNVKQWLNEIDRYASENVNKLLVG 120

Query:   121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASN 180
             NKCDLT+ KVVS ETAKAFADE+GIPF+ETSAK+ATNVE+AFMAM A+IK RMASQPA  
Sbjct:   121 NKCDLTSQKVVSTETAKAFADELGIPFLETSAKNATNVEEAFMAMTAAIKTRMASQPAGG 180

Query:   181 NARPPTVQIRGQPVNQKSGCCST 203
             + +PPTVQIRGQPVNQ+SGCCS+
Sbjct:   181 S-KPPTVQIRGQPVNQQSGCCSS 202

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0009555 "pollen development" evidence=IMP

GO:0009860 "pollen tube growth" evidence=IGI

GO:0009506 "plasmodesma" evidence=IDA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

TAIR|locus:2171484 RAB1A "RAB GTPase homolog 1A" [Arabidopsis thaliana (taxid:3702)]

 Score = 933 (333.5 bits), Expect = 1.0e-93, P = 1.0e-93
 Identities = 182/203 (89%), Positives = 192/203 (94%)

Query:     1 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ 60
             MN EYDYLFKLLLIGDSGVGKSCLLLRFADDSYL+SYISTIGVDFKIRTVEQDGKTIKLQ
Sbjct:     1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQ 60

Query:    61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120
             IWDTAGQERFRTITSSYYRGAHGIIV YDVTD ESFNNVKQWLNEIDRYASENVNKLLVG
Sbjct:    61 IWDTAGQERFRTITSSYYRGAHGIIVTYDVTDLESFNNVKQWLNEIDRYASENVNKLLVG 120

Query:   121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASN 180
             NK DLT+ KVVS ETAKAFADE+GIPF+ETSAK+ATNVE+AFMAM A+IK RMASQPA  
Sbjct:   121 NKNDLTSQKVVSTETAKAFADELGIPFLETSAKNATNVEEAFMAMTAAIKTRMASQPAGG 180

Query:   181 NARPPTVQIRGQPVNQKSGCCST 203
              A+PPTVQIRGQPVNQ+SGCCS+
Sbjct:   181 -AKPPTVQIRGQPVNQQSGCCSS 202

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0009860 "pollen tube growth" evidence=IGI

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

UNIPROTKB|F1NNL7 RAB1A "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 842 (301.5 bits), Expect = 4.4e-84, P = 4.4e-84
 Identities = 164/202 (81%), Positives = 173/202 (85%)

Query:     1 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ 60
             MN EYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQ
Sbjct:     4 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 63

Query:    61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120
             IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWL EIDRYASENVNKLLVG
Sbjct:    64 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG 123

Query:   121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASN 180
             NKCDLT  KVV Y TAK FAD +GIPF+ETSAK+ATNVEQ+FM MAA IK RM     + 
Sbjct:   124 NKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAG 183

Query:   181 NARPPTVQIRGQPVNQKSG-CC 201
              A    V+I+  PV Q SG CC
Sbjct:   184 GAEKSNVKIQSTPVKQSSGGCC 205

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

UNIPROTKB|A1L528 RAB1A "RAB1A, member RAS oncogene family" [Bos taurus (taxid:9913)]

 Score = 838 (300.0 bits), Expect = 1.2e-83, P = 1.2e-83
 Identities = 163/202 (80%), Positives = 172/202 (85%)

Query:     1 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ 60
             MN EYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQ
Sbjct:     4 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 63

Query:    61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120
             IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWL EIDRYASENVNKLLVG
Sbjct:    64 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG 123

Query:   121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASN 180
             NKCDLT  KVV Y TAK FAD +GIPF+ETSAK+ATNVEQ+FM MAA IK RM     + 
Sbjct:   124 NKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAG 183

Query:   181 NARPPTVQIRGQPVNQKSG-CC 201
              A    V+I+  PV Q  G CC
Sbjct:   184 GAEKSNVKIQSTPVKQSGGGCC 205

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|F1Q0H3 RAB1A "Ras-related protein Rab-1A" [Canis lupus familiaris (taxid:9615)]

 Score = 838 (300.0 bits), Expect = 1.2e-83, P = 1.2e-83
 Identities = 163/202 (80%), Positives = 172/202 (85%)

Query:     1 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ 60
             MN EYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQ
Sbjct:    49 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 108

Query:    61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120
             IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWL EIDRYASENVNKLLVG
Sbjct:   109 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG 168

Query:   121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASN 180
             NKCDLT  KVV Y TAK FAD +GIPF+ETSAK+ATNVEQ+FM MAA IK RM     + 
Sbjct:   169 NKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAG 228

Query:   181 NARPPTVQIRGQPVNQKSG-CC 201
              A    V+I+  PV Q  G CC
Sbjct:   229 GAEKSNVKIQSTPVKQSGGGCC 250

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|P62822 RAB1A "Ras-related protein Rab-1A" [Canis lupus familiaris (taxid:9615)]

 Score = 838 (300.0 bits), Expect = 1.2e-83, P = 1.2e-83
 Identities = 163/202 (80%), Positives = 172/202 (85%)

Query:     1 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ 60
             MN EYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQ
Sbjct:     4 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 63

Query:    61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120
             IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWL EIDRYASENVNKLLVG
Sbjct:    64 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG 123

Query:   121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASN 180
             NKCDLT  KVV Y TAK FAD +GIPF+ETSAK+ATNVEQ+FM MAA IK RM     + 
Sbjct:   124 NKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAG 183

Query:   181 NARPPTVQIRGQPVNQKSG-CC 201
              A    V+I+  PV Q  G CC
Sbjct:   184 GAEKSNVKIQSTPVKQSGGGCC 205

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|P62820 RAB1A "Ras-related protein Rab-1A" [Homo sapiens (taxid:9606)]

 Score = 838 (300.0 bits), Expect = 1.2e-83, P = 1.2e-83
 Identities = 163/202 (80%), Positives = 172/202 (85%)

Query:     1 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ 60
             MN EYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQ
Sbjct:     4 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 63

Query:    61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120
             IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWL EIDRYASENVNKLLVG
Sbjct:    64 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG 123

Query:   121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASN 180
             NKCDLT  KVV Y TAK FAD +GIPF+ETSAK+ATNVEQ+FM MAA IK RM     + 
Sbjct:   124 NKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAG 183

Query:   181 NARPPTVQIRGQPVNQKSG-CC 201
              A    V+I+  PV Q  G CC
Sbjct:   184 GAEKSNVKIQSTPVKQSGGGCC 205

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0003924 "GTPase activity" evidence=TAS

GO:0006184 "GTP catabolic process" evidence=TAS

UNIPROTKB|F2Z5U4 RAB1A "Ras-related protein Rab-1A" [Sus scrofa (taxid:9823)]

 Score = 838 (300.0 bits), Expect = 1.2e-83, P = 1.2e-83
 Identities = 163/202 (80%), Positives = 172/202 (85%)

Query:     1 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ 60
             MN EYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQ
Sbjct:     1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 60

Query:    61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120
             IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWL EIDRYASENVNKLLVG
Sbjct:    61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG 120

Query:   121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASN 180
             NKCDLT  KVV Y TAK FAD +GIPF+ETSAK+ATNVEQ+FM MAA IK RM     + 
Sbjct:   121 NKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAG 180

Query:   181 NARPPTVQIRGQPVNQKSG-CC 201
              A    V+I+  PV Q  G CC
Sbjct:   181 GAEKSNVKIQSTPVKQSGGGCC 202

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

MGI|MGI:97842 Rab1 "RAB1, member RAS oncogene family" [Mus musculus (taxid:10090)]

 Score = 838 (300.0 bits), Expect = 1.2e-83, P = 1.2e-83
 Identities = 163/202 (80%), Positives = 172/202 (85%)

Query:     1 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ 60
             MN EYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQ
Sbjct:     4 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 63

Query:    61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120
             IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWL EIDRYASENVNKLLVG
Sbjct:    64 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG 123

Query:   121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASN 180
             NKCDLT  KVV Y TAK FAD +GIPF+ETSAK+ATNVEQ+FM MAA IK RM     + 
Sbjct:   124 NKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAG 183

Query:   181 NARPPTVQIRGQPVNQKSG-CC 201
              A    V+I+  PV Q  G CC
Sbjct:   184 GAEKSNVKIQSTPVKQSGGGCC 205

GO:0000139 "Golgi membrane" evidence=ISO

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005525 "GTP binding" evidence=ISO

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=TAS

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=ISA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0043025 "neuronal cell body" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q05974	RAB1A_LYMST	No assigned EC number	0.7920	0.9901	0.9804	N/A	no
Q9SEH3	RAD2C_ARATH	No assigned EC number	0.8965	0.9950	1.0	no	no
Q06AU7	RAB1B_PIG	No assigned EC number	0.7960	0.9852	0.9950	no	no
Q6NYB7	RAB1A_RAT	No assigned EC number	0.8059	0.9901	0.9804	yes	no
Q9D1G1	RAB1B_MOUSE	No assigned EC number	0.7960	0.9852	0.9950	no	no
Q05737	YPTM2_MAIZE	No assigned EC number	0.9162	1.0	1.0	N/A	no
P16976	YPTM1_MAIZE	No assigned EC number	0.7019	1.0	0.9759	N/A	no
Q9ZRE2	RABD1_ARATH	No assigned EC number	0.7425	0.9901	0.9804	no	no
Q01890	YPT1_PHYIN	No assigned EC number	0.7761	0.9901	1.0	N/A	no
P40392	RIC1_ORYSJ	No assigned EC number	0.8910	0.9950	1.0	no	no
Q92928	RAB1C_HUMAN	No assigned EC number	0.7562	0.9852	0.9950	no	no
P28188	RAD2A_ARATH	No assigned EC number	0.9064	1.0	1.0	yes	no
Q9FPJ4	RAD2B_ARATH	No assigned EC number	0.8965	0.9950	1.0	no	no
Q9H0U4	RAB1B_HUMAN	No assigned EC number	0.7960	0.9852	0.9950	no	no
P11620	YPT1_SCHPO	No assigned EC number	0.7339	0.9901	0.9901	yes	no
P01123	YPT1_YEAST	No assigned EC number	0.6747	0.9901	0.9757	yes	no
Q39433	RB1BV_BETVU	No assigned EC number	0.5951	0.9852	0.9302	N/A	no
Q5RE13	RAB1B_PONAB	No assigned EC number	0.7960	0.9852	0.9950	no	no
P62820	RAB1A_HUMAN	No assigned EC number	0.8059	0.9901	0.9804	yes	no
P62821	RAB1A_MOUSE	No assigned EC number	0.8059	0.9901	0.9804	yes	no
P62822	RAB1A_CANFA	No assigned EC number	0.8059	0.9901	0.9804	yes	no
P36861	YPTV2_VOLCA	No assigned EC number	0.585	0.9802	0.9170	N/A	no
P34139	RAB1A_DICDI	No assigned EC number	0.7475	0.9901	0.9950	yes	no
P33723	YPT1_NEUCR	No assigned EC number	0.7536	0.9901	0.9901	N/A	no
Q4R5P1	RAB8A_MACFA	No assigned EC number	0.5431	0.9704	0.9516	N/A	no
Q4R8X3	RAB1B_MACFA	No assigned EC number	0.7910	0.9852	0.9950	N/A	no
P22125	RAB1_DIPOM	No assigned EC number	0.8059	0.9901	0.9950	N/A	no
Q2HJH2	RAB1B_BOVIN	No assigned EC number	0.8009	0.9852	0.9950	yes	no
Q39571	YPTC1_CHLRE	No assigned EC number	0.8465	0.9901	0.9901	N/A	no
Q52NJ2	RAB1A_PIG	No assigned EC number	0.8009	0.9901	0.9804	yes	no
P31584	YPTV1_VOLCA	No assigned EC number	0.8203	0.9704	0.9704	N/A	no
P10536	RAB1B_RAT	No assigned EC number	0.7910	0.9852	0.9950	no	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pm.C_LG_III0194 SubName- Full=Putative uncharacterized protein; (203 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	203
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	1e-128
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	1e-111
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	1e-102
pfam00071	162	pfam00071, Ras, Ras family	1e-99
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	1e-95
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	2e-82
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	4e-81
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	2e-79
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	1e-75
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	1e-73
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	8e-72
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	4e-69
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	6e-69
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	8e-66
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	2e-65
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	2e-64
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	2e-63
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	8e-63
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	4e-62
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	6e-62
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	3e-60
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	9e-59
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	2e-57
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	2e-57
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	4e-57
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	5e-57
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	2e-56
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	1e-53
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	1e-50
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	6e-50
cd04121	189	cd04121, Rab40, Rab GTPase family 40 (Rab40) conta	3e-47
smart00010	166	smart00010, small_GTPase, Small GTPase of the Ras	3e-45
smart00173	164	smart00173, RAS, Ras subfamily of RAS small GTPase	4e-45
cd04116	170	cd04116, Rab9, Rab GTPase family 9 (Rab9)	5e-42
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	2e-41
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	4e-39
cd04106	162	cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-	9e-39
cd04145	164	cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3	3e-38
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	6e-38
cd04176	163	cd04176, Rap2, Rap2 family GTPase consists of Rap2	2e-37
cd04138	162	cd04138, H_N_K_Ras_like, Ras GTPase family contain	2e-37
cd04118	193	cd04118, Rab24, Rab GTPase family 24 (Rab24)	4e-37
cd04136	164	cd04136, Rap_like, Rap-like family consists of Rap	5e-37
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	7e-37
smart00174	174	smart00174, RHO, Rho (Ras homology) subfamily of R	2e-36
cd04109	213	cd04109, Rab28, Rab GTPase family 28 (Rab28)	1e-35
cd04124	161	cd04124, RabL2, Rab GTPase-like family 2 (Rab-like	1e-35
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	5e-35
cd04137	180	cd04137, RheB, Ras Homolog Enriched in Brain (RheB	2e-34
cd04175	164	cd04175, Rap1, Rap1 family GTPase consists of Rap1	5e-34
cd04177	168	cd04177, RSR1, RSR1/Bud1p family GTPase	6e-34
cd04144	190	cd04144, Ras2, Rat sarcoma (Ras) family 2 of small	4e-33
cd04132	197	cd04132, Rho4_like, Ras homology family 4 (Rho4) o	5e-33
cd04101	167	cd04101, RabL4, Rab GTPase-like family 4 (Rab-like	4e-32
PTZ00099	176	PTZ00099, PTZ00099, rab6; Provisional	4e-32
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	5e-32
PTZ00369	189	PTZ00369, PTZ00369, Ras-like protein; Provisional	6e-32
cd00877	166	cd00877, Ran, Ras-related nuclear proteins (Ran)/T	2e-31
PTZ00132	215	PTZ00132, PTZ00132, GTP-binding nuclear protein Ra	8e-31
cd04141	172	cd04141, Rit_Rin_Ric, Ras-like protein in all tiss	8e-30
cd04146	166	cd04146, RERG_RasL11_like, Ras-related and Estroge	8e-29
cd04140	165	cd04140, ARHI_like, A Ras homolog member I (ARHI)	5e-27
PLN03071	219	PLN03071, PLN03071, GTP-binding nuclear protein Ra	8e-27
cd04148	219	cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam	5e-26
cd01870	175	cd01870, RhoA_like, Ras homology family A (RhoA)-l	7e-26
cd04130	173	cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W	9e-26
cd04126	220	cd04126, Rab20, Rab GTPase family 20 (Rab20)	5e-24
cd04131	176	cd04131, Rnd, Rho family GTPase subfamily Rnd incl	1e-23
cd04129	190	cd04129, Rho2, Ras homology family 2 (Rho2) of sma	9e-23
cd04128	182	cd04128, Spg1, Septum-promoting GTPase (Spg1)	1e-22
cd04134	185	cd04134, Rho3, Ras homology family 3 (Rho3) of sma	2e-22
smart00176	200	smart00176, RAN, Ran (Ras-related nuclear proteins	2e-22
pfam08477	116	pfam08477, Miro, Miro-like protein	2e-22
cd04133	173	cd04133, Rop_like, Rho-related protein from plants	1e-21
cd00878	158	cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf	2e-20
cd01875	191	cd01875, RhoG, Ras homolog family, member G (RhoG)	3e-20
cd01871	174	cd01871, Rac1_like, Ras-related C3 botulinum toxin	9e-20
cd04147	197	cd04147, Ras_dva, Ras - dorsal-ventral anterior lo	2e-19
cd04172	182	cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases	4e-19
cd04135	174	cd04135, Tc10, Rho GTPase TC10 (Tc10)	1e-18
cd09914	161	cd09914, RocCOR, Ras of complex proteins (Roc) C-t	5e-17
cd04159	159	cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl	4e-16
cd04174	232	cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases	9e-16
cd04173	221	cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases	1e-15
cd01874	175	cd01874, Cdc42, cell division cycle 42 (Cdc42) is	2e-14
cd04152	183	cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7)	3e-14
pfam00025	174	pfam00025, Arf, ADP-ribosylation factor family	3e-14
cd01893	168	cd01893, Miro1, Mitochondrial Rho family 1 (Miro1)	1e-13
cd04143	247	cd04143, Rhes_like, Ras homolog enriched in striat	3e-13
cd04153	174	cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8)	7e-13
cd04160	168	cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)	1e-12
PTZ00133	182	PTZ00133, PTZ00133, ADP-ribosylation factor; Provi	1e-11
smart00177	175	smart00177, ARF, ARF-like small GTPases; ARF, ADP-	2e-11
cd04102	204	cd04102, RabL3, Rab GTPase-like family 3 (Rab-like	3e-11
cd00879	191	cd00879, Sar1, Sar1 is an essential component of C	9e-11
cd04149	168	cd04149, Arf6, ADP ribosylation factor 6 (Arf6)	1e-10
cd04150	159	cd04150, Arf1_5_like, ADP-ribosylation factor-1 (A	2e-10
cd04156	160	cd04156, ARLTS1, Arf-like tumor suppressor gene 1	2e-10
PLN00023	334	PLN00023, PLN00023, GTP-binding protein; Provision	2e-09
cd04155	174	cd04155, Arl3, Arf-like 3 (Arl3) GTPase	2e-09
cd01873	195	cd01873, RhoBTB, RhoBTB protein is an atypical mem	3e-09
cd04142	198	cd04142, RRP22, Ras-related protein on chromosome	3e-09
PLN00223	181	PLN00223, PLN00223, ADP-ribosylation factor; Provi	7e-09
cd04154	173	cd04154, Arl2, Arf-like 2 (Arl2) GTPase	1e-08
cd04158	169	cd04158, ARD1, (ADP-ribosylation factor domain pro	2e-08
cd04162	164	cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp	6e-07
COG2229	187	COG2229, COG2229, Predicted GTPase [General functi	7e-07
cd04151	158	cd04151, Arl1, ADP ribosylation factor 1 (Arf1)	7e-07
cd04105	202	cd04105, SR_beta, Signal recognition particle rece	6e-06
cd01892	180	cd01892, Miro2, Mitochondrial Rho family 2 (Miro2)	9e-06
cd04103	158	cd04103, Centaurin_gamma, Centaurin gamma (CENTG)	5e-05
cd04157	162	cd04157, Arl6, Arf-like 6 (Arl6) GTPase	7e-05
COG0486	454	COG0486, ThdF, Predicted GTPase [General function	5e-04
pfam04670	230	pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserve	6e-04
COG1161	322	COG1161, COG1161, Predicted GTPases [General funct	0.002
cd04161	167	cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (A	0.002
cd01850	275	cd01850, CDC_Septin, CDC/Septin GTPase family	0.003

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score =  357 bits (919), Expect = e-128
 Identities = 145/166 (87%), Positives = 153/166 (92%)

Query: 7   YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG 66
           YLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKT+KLQIWDTAG
Sbjct: 1   YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAG 60

Query: 67  QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLT 126
           QERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWL EIDRYASENVNKLLVGNKCDLT
Sbjct: 61  QERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 120

Query: 127 ANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
             KVV Y  AK FADE+GIPF+ETSAK+ATNVE+AFM MA  IK R
Sbjct: 121 DKKVVDYTEAKEFADELGIPFLETSAKNATNVEEAFMTMAREIKKR 166

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score =  314 bits (808), Expect = e-111
 Identities = 113/167 (67%), Positives = 139/167 (83%)

Query: 6   DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTA 65
           DYLFKLLLIGDSGVGKSCLLLRF++DS+  S+ISTIG+DFKIRT+E DGK IKLQIWDTA
Sbjct: 1   DYLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTA 60

Query: 66  GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL 125
           GQERFRTIT+SYYRGA GII+VYD+TD++SF N+K W+  ID +ASE+V ++LVGNKCD+
Sbjct: 61  GQERFRTITTSYYRGAMGIILVYDITDEKSFENIKNWMRNIDEHASEDVERMLVGNKCDM 120

Query: 126 TANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
              +VVS E  +A A E GI F+ETSAK+  NVE+AF+ +A  I  +
Sbjct: 121 EEKRVVSKEEGEALAREYGIKFLETSAKANINVEEAFLTLAKDILKK 167

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score =  292 bits (750), Expect = e-102
 Identities = 104/164 (63%), Positives = 127/164 (77%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           FK++LIGDSGVGKS LL RF D  + E Y STIGVDFK +T+E DGK +KLQIWDTAGQE
Sbjct: 1   FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE 60

Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
           RFR+ITSSYYRGA G ++VYD+T++ESF N++ WL E+  YAS NV  +LVGNK DL   
Sbjct: 61  RFRSITSSYYRGAVGALLVYDITNRESFENLENWLKELREYASPNVVIMLVGNKSDLEEQ 120

Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
           + VS E A+AFA+E G+PF ETSAK+ TNVE+AF  +A  I  R
Sbjct: 121 RQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAREILKR 164

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score =  284 bits (730), Expect = 1e-99
 Identities = 98/162 (60%), Positives = 122/162 (75%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           KL+L+GD GVGKS LL+RF  + + E YI TIGVDF  +T+E DGKT+KLQIWDTAGQER
Sbjct: 1   KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER 60

Query: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANK 129
           FR +   YYRGA G ++VYD+T ++SF NVK+WL EI R+A ENV  +LVGNKCDL   +
Sbjct: 61  FRALRPLYYRGAQGFLLVYDITSRDSFENVKKWLEEILRHADENVPIVLVGNKCDLEDQR 120

Query: 130 VVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKN 171
           VVS E  +A A E+G+PFMETSAK+  NVE+AF  +A  I  
Sbjct: 121 VVSTEEGEALAKELGLPFMETSAKTNENVEEAFEELAREILK 162

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score =  274 bits (704), Expect = 1e-95
 Identities = 100/158 (63%), Positives = 126/158 (79%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           FK++LIGDSGVGK+ LLLRF D+ + E+Y STIGVDFK +T+E DGK +KLQIWDTAGQE
Sbjct: 1   FKIVLIGDSGVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTIEVDGKKVKLQIWDTAGQE 60

Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
           RFR+ITSSYYRGAHG I+VYDVT++ESF N+ +WLNE+  YA  N+  +LVGNK DL   
Sbjct: 61  RFRSITSSYYRGAHGAILVYDVTNRESFENLDKWLNELKEYAPPNIPIILVGNKSDLEDE 120

Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMA 166
           + VS E A+ FA E G+ F ETSAK+  NV++AF ++A
Sbjct: 121 RQVSTEEAQQFAKENGLLFFETSAKTGENVDEAFESLA 158

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score =  241 bits (618), Expect = 2e-82
 Identities = 92/164 (56%), Positives = 119/164 (72%)

Query: 6   DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTA 65
           DYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  RT++ DGKTIK QIWDTA
Sbjct: 1   DYLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRTIQIDGKTIKAQIWDTA 60

Query: 66  GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL 125
           GQER+R ITS+YYRGA G ++VYD+T + +F NV++WL E+  +A  N+  +LVGNK DL
Sbjct: 61  GQERYRAITSAYYRGAVGALLVYDITKKSTFENVERWLKELRDHADSNIVIMLVGNKSDL 120

Query: 126 TANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
              + V  E AKAFA++ G+ F+ETSA   TNVE+AF  +   I
Sbjct: 121 RHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLLTEI 164

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score =  239 bits (612), Expect = 4e-81
 Identities = 108/198 (54%), Positives = 138/198 (69%), Gaps = 1/198 (0%)

Query: 4   EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWD 63
           +YD+LFKLL+IGDSGVGKS LLLRFAD+++  SYI+TIGVDFKIRTVE +G+ +KLQIWD
Sbjct: 2   DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWD 61

Query: 64  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKC 123
           TAGQERFRTITS+YYRG HG+IVVYDVT+ ESF NVK+WL EI++   ++V K+LVGNK 
Sbjct: 62  TAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQ-NCDDVCKVLVGNKN 120

Query: 124 DLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNAR 183
           D    KVV  E A  FA ++GI   ETSAK   NVE+ F  +   +        A    +
Sbjct: 121 DDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCITELVLRAKKDNLAKQQQQ 180

Query: 184 PPTVQIRGQPVNQKSGCC 201
                ++    +++   C
Sbjct: 181 QQNDVVKLPKNSKRKKRC 198

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score =  234 bits (598), Expect = 2e-79
 Identities = 93/162 (57%), Positives = 121/162 (74%), Gaps = 2/162 (1%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K+LLIGDSGVGKS LLLRF DD++ E   STIGVDFK++TV  DGK +KL IWDTAGQE
Sbjct: 1   LKILLIGDSGVGKSSLLLRFTDDTFDEDLSSTIGVDFKVKTVTVDGKKVKLAIWDTAGQE 60

Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
           RFRT+TSSYYRGA G+I+VYDVT +++F+N+  WLNE+D Y+ + +  K+LVGNK D   
Sbjct: 61  RFRTLTSSYYRGAQGVILVYDVTRRDTFDNLDTWLNELDTYSTNPDAVKMLVGNKIDK-E 119

Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
           N+ V+ E  + FA +  + F+ETSAK+   V+QAF  +   I
Sbjct: 120 NREVTREEGQKFARKHNMLFIETSAKTRIGVQQAFEELVEKI 161

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score =  224 bits (573), Expect = 1e-75
 Identities = 92/165 (55%), Positives = 124/165 (75%)

Query: 5   YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDT 64
           Y YLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R +  DGK IKLQIWDT
Sbjct: 1   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDT 60

Query: 65  AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCD 124
           AGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL +  ++++ N+  +L+GNKCD
Sbjct: 61  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCD 120

Query: 125 LTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
           L + + VSYE  +AFA E G+ FMETSAK+A+NVE+AF+  A  I
Sbjct: 121 LESRREVSYEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEI 165

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score =  219 bits (560), Expect = 1e-73
 Identities = 87/162 (53%), Positives = 119/162 (73%), Gaps = 1/162 (0%)

Query: 6   DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTA 65
           D+LFK++LIGDS VGK+C++ RF   ++ E   +TIGVDF ++T+E  GK +KLQIWDTA
Sbjct: 1   DFLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIQGKRVKLQIWDTA 60

Query: 66  GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL 125
           GQERFRTIT SYYR A+G I+ YD+T + SF +V  W+ E+++Y + NV  LL+GNKCDL
Sbjct: 61  GQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDL 120

Query: 126 TANKVVSYETAKAFADEIGIPF-METSAKSATNVEQAFMAMA 166
              + V +E A   A+  GI   +ETSAK ++NVE+AF+ MA
Sbjct: 121 EEQREVLFEEACTLAEHYGILAVLETSAKESSNVEEAFLLMA 162

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score =  216 bits (552), Expect = 8e-72
 Identities = 101/212 (47%), Positives = 145/212 (68%), Gaps = 9/212 (4%)

Query: 1   MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ 60
           +++EYDYLFK++LIGDSGVGKS +L RF  + +     STIGV+F  RT++ +GKT+K Q
Sbjct: 5   VDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQ 64

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120
           IWDTAGQER+R ITS+YYRGA G ++VYD+T +++F+NV++WL E+  +A  N+  ++ G
Sbjct: 65  IWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAG 124

Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI-----KNRMAS 175
           NK DL   + V+ E  +A A++ G+ F+ETSA  ATNVE+AF  +   I     K  +A+
Sbjct: 125 NKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTILLEIYHIISKKALAA 184

Query: 176 QPASNNARPP----TVQIRGQPVNQKSGCCST 203
           Q A+ N+  P    T+ +     N K GCCST
Sbjct: 185 QEAAANSGLPGQGTTINVADTSGNNKRGCCST 216

Length = 216

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score =  209 bits (534), Expect = 4e-69
 Identities = 98/208 (47%), Positives = 128/208 (61%), Gaps = 11/208 (5%)

Query: 5   YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDT 64
           Y YLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R +  D K IKLQIWDT
Sbjct: 3   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDT 62

Query: 65  AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCD 124
           AGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL +  ++A+ N+  +L+GNKCD
Sbjct: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 122

Query: 125 LTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI-----------KNRM 173
           L   + VS E  + FA E G+ FME SAK+A NVE+AF+  AA I            N  
Sbjct: 123 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAKIYKKIQDGVFDVSNES 182

Query: 174 ASQPASNNARPPTVQIRGQPVNQKSGCC 201
                   A P     R    +Q  GCC
Sbjct: 183 YGIKVGYGAIPGASGGRDGTSSQGGGCC 210

Length = 210

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score =  207 bits (529), Expect = 6e-69
 Identities = 78/161 (48%), Positives = 106/161 (65%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           FKL+L+GDS VGKS ++LRF  + + E+  STIG  F  +TV  D  T+K +IWDTAGQE
Sbjct: 2   FKLVLLGDSSVGKSSIVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQE 61

Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
           R+R++   YYRGA   IVVYD+T +ESF   K W+ E+  +   N+   L GNK DL + 
Sbjct: 62  RYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQEHGPPNIVIALAGNKADLESK 121

Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
           + VS E A+ +ADE G+ FMETSAK+  NV + F  +A  +
Sbjct: 122 RQVSTEEAQEYADENGLLFMETSAKTGENVNELFTEIARKL 162

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score =  199 bits (508), Expect = 8e-66
 Identities = 84/155 (54%), Positives = 118/155 (76%)

Query: 8   LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
           +FKLL+IG+S VGK+  L R+ADDS+  +++ST+G+DFK++TV ++ K IKLQIWDTAGQ
Sbjct: 1   MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRNDKRIKLQIWDTAGQ 60

Query: 68  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTA 127
           ER+RTIT++YYRGA G I++YD+T++ESFN V+ W  +I  Y+ +N   +LVGNKCD+  
Sbjct: 61  ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMED 120

Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAF 162
            +VVS E  +  AD++G  F E SAK   NV+Q F
Sbjct: 121 ERVVSAERGRQLADQLGFEFFEASAKENINVKQVF 155

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score =  199 bits (507), Expect = 2e-65
 Identities = 97/196 (49%), Positives = 136/196 (69%), Gaps = 8/196 (4%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLE-SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
           FK++L+GDSGVGK+CLL+RF D ++L  S+I+T+G+ F  + V  DG  +KLQIWDTAGQ
Sbjct: 1   FKVMLVGDSGVGKTCLLVRFKDGAFLAGSFIATVGIQFTNKVVTVDGVKVKLQIWDTAGQ 60

Query: 68  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTA 127
           ERFR++T +YYR AH ++++YDVT++ SF+N++ WL EI  YA  +V  +L+GNK D++ 
Sbjct: 61  ERFRSVTHAYYRDAHALLLLYDVTNKSSFDNIRAWLTEILEYAQSDVVIMLLGNKADMSG 120

Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTV 187
            +VV  E  +  A E G+PFMETSAK+  NVE AF A+A  +K+R   QP       P  
Sbjct: 121 ERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAKELKHRSVEQPDE-----PKF 175

Query: 188 QIRGQPVNQK--SGCC 201
           +I+     QK  SGCC
Sbjct: 176 KIQDYVEKQKKSSGCC 191

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score =  196 bits (499), Expect = 2e-64
 Identities = 85/166 (51%), Positives = 121/166 (72%)

Query: 4   EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWD 63
           +YD+LFK++LIG++GVGK+CL+ RF    +     +TIGVDF I+TVE  G+ IKLQIWD
Sbjct: 3   DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWD 62

Query: 64  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKC 123
           TAGQERFR+IT SYYR A+ +I+ YD+T +ESF  + +WL EI++YA+  V  +LVGNK 
Sbjct: 63  TAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKI 122

Query: 124 DLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
           DL   + VS + A+ F+D   + ++ETSAK + NVE+ F+ +A  +
Sbjct: 123 DLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLACRL 168

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score =  193 bits (492), Expect = 2e-63
 Identities = 83/163 (50%), Positives = 112/163 (68%)

Query: 7   YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG 66
           Y+FK ++IGD GVGKSCLL +F +  ++     TIGV+F  R +E +G+ IKLQIWDTAG
Sbjct: 1   YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAG 60

Query: 67  QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLT 126
           QERFR +T SYYRGA G ++VYD+T + ++N++  WL +     + N    L+GNK DL 
Sbjct: 61  QERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLE 120

Query: 127 ANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
           A + V+YE AK FADE G+ F+E SAK+  NVE AF+  A  I
Sbjct: 121 AQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAKKI 163

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score =  191 bits (488), Expect = 8e-63
 Identities = 82/161 (50%), Positives = 112/161 (69%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           FK L+IG +G GKSCLL +F ++ + +    TIGV+F  R V   GK++KLQIWDTAGQE
Sbjct: 1   FKFLIIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKSVKLQIWDTAGQE 60

Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
           RFR++T SYYRGA G ++VYD+T +ESFN +  WL +    AS ++  +LVGNK DL  +
Sbjct: 61  RFRSVTRSYYRGAAGALLVYDITSRESFNALTNWLTDARTLASPDIVIILVGNKKDLEDD 120

Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
           + V++  A  FA E G+ F+ETSA +  NVE+AF+  A SI
Sbjct: 121 REVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARSI 161

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score =  190 bits (484), Expect = 4e-62
 Identities = 68/161 (42%), Positives = 107/161 (66%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            KL+ +GD  VGK+ ++ RF  D++   Y +TIG+DF  +T+  D KT++LQ+WDTAGQE
Sbjct: 1   HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYVDDKTVRLQLWDTAGQE 60

Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
           RFR++  SY R +   +VVYD+T+++SF+N  +W++++      +V  +LVGNK DL+  
Sbjct: 61  RFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDK 120

Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
           + VS E  +  A E    F+ETSAK+  NV+Q F  +A ++
Sbjct: 121 RQVSTEEGEKKAKENNAMFIETSAKAGHNVKQLFKKIAQAL 161

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score =  191 bits (487), Expect = 6e-62
 Identities = 79/177 (44%), Positives = 116/177 (65%), Gaps = 10/177 (5%)

Query: 7   YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVE-QDGKTIKLQIWDTA 65
           Y F+L++IGDS VGKS LL RF +  + E    T+GVDF  R +E + G  IKLQ+WDTA
Sbjct: 1   YQFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTA 60

Query: 66  GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNK-----LLVG 120
           GQERFR+IT SYYR + G+++V+D+T++ESF +V  WL E    A  ++       +LVG
Sbjct: 61  GQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEE----ARSHIQPHRPVFILVG 116

Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQP 177
           +KCDL + + V+ E A+  A ++G+ ++ETSA++  NVE+AF  +   I  R+    
Sbjct: 117 HKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELLTQEIYERIKRGE 173

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score =  185 bits (471), Expect = 3e-60
 Identities = 79/158 (50%), Positives = 114/158 (72%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           F+LLLIGDSGVGK+CLL RF D+ +  S+ISTIGVDFK++T+E DG  +++QIWDTAGQE
Sbjct: 1   FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQE 60

Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
           R++TIT  YYR A GI +VYD++ + S+ ++ +W++++D YA E V K+L+GNK D    
Sbjct: 61  RYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQK 120

Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMA 166
           + V  E     A E G+ F ETSA +  N++++F  + 
Sbjct: 121 RQVGDEQGNKLAKEYGMDFFETSACTNKNIKESFTRLT 158

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score =  183 bits (465), Expect = 9e-59
 Identities = 97/202 (48%), Positives = 124/202 (61%), Gaps = 5/202 (2%)

Query: 5   YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDT 64
           YD  FK+LLIGDSGVGKS LL+ F   S +E    TIGVDFKI+ +   GK +KL IWDT
Sbjct: 11  YDLSFKILLIGDSGVGKSSLLVSFISSS-VEDLAPTIGVDFKIKQLTVGGKRLKLTIWDT 69

Query: 65  AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLNEIDRYAS-ENVNKLLVGNK 122
           AGQERFRT+TSSYYR A GII+VYDVT +E+F N+   W  E++ Y++ ++  K+LVGNK
Sbjct: 70  AGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNK 129

Query: 123 CDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKN--RMASQPASN 180
            D  + + VS E   A A E G  F+E SAK+  NVEQ F  +A  I     +  + ++ 
Sbjct: 130 VDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEELALKIMEVPSLLEEGSTA 189

Query: 181 NARPPTVQIRGQPVNQKSGCCS 202
             R    Q          GCCS
Sbjct: 190 VKRNILKQKPEHQPPPNGGCCS 211

Length = 211

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score =  179 bits (456), Expect = 2e-57
 Identities = 84/185 (45%), Positives = 126/185 (68%), Gaps = 1/185 (0%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           ++++IG  GVGK+ L+ RF DD++ E+  ST+GVDFKI+TVE  GK I+LQIWDTAGQER
Sbjct: 2   QVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQER 61

Query: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANK 129
           F +ITS+YYR A GII+VYD+T +E+F+++ +W+  ID+YASE+   LLVGNK D   ++
Sbjct: 62  FNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDR 121

Query: 130 VVSYETAKAFADEI-GIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQ 188
            ++ +  + FA +I G+ F E SAK   NV++ F+ +   I  +M      N      + 
Sbjct: 122 EITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKMPLDILRNELSNSILS 181

Query: 189 IRGQP 193
           ++ +P
Sbjct: 182 LQPEP 186

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score =  177 bits (452), Expect = 2e-57
 Identities = 67/161 (41%), Positives = 103/161 (63%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           FK++L+G+  VGK+ L+LR+ ++ + E + ST    F  +TV   GK I L IWDTAGQE
Sbjct: 1   FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQE 60

Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
           R+  +   YYR A G I+VYD+TD +SF  VK+W+ E+ +    N++ ++VGNK DL   
Sbjct: 61  RYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQ 120

Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
           +VVS   A+ +A  +G    ETSAK+   +E+ F+++A  +
Sbjct: 121 RVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKRM 161

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score =  177 bits (451), Expect = 4e-57
 Identities = 78/168 (46%), Positives = 110/168 (65%), Gaps = 5/168 (2%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           FK+++IGDS VGK+CL  RF    + E   +TIGVDF+ RTVE DG+ IK+Q+WDTAGQE
Sbjct: 3   FKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQE 62

Query: 69  RFR-TITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLT 126
           RFR ++   YYR  H ++ VYDVT+  SF+++  W+ E ++++    V ++LVGNKCDL 
Sbjct: 63  RFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLR 122

Query: 127 ANKVVSYETAKAFADEIGIPFMETSAK---SATNVEQAFMAMAASIKN 171
               V  + A+ FAD   +P  ETSAK      +VE  FM +A  +K+
Sbjct: 123 EQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIFMTLAHKLKS 170

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score =  177 bits (451), Expect = 5e-57
 Identities = 69/172 (40%), Positives = 106/172 (61%), Gaps = 5/172 (2%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K++++GDSGVGK+ L+ ++ +  +   Y +TIG DF  + V  D + + LQIWDTAGQE
Sbjct: 1   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDRLVTLQIWDTAGQE 60

Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYAS----ENVNKLLVGNKCD 124
           RF+++  ++YRGA   ++VYDVT+ +SF ++  W +E    AS    EN   +++GNK D
Sbjct: 61  RFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPRDPENFPFVVLGNKID 120

Query: 125 LTANKVVSYETAKAFADEIG-IPFMETSAKSATNVEQAFMAMAASIKNRMAS 175
           L   + VS + A+ +    G IP+ ETSAK A NV+QAF  +A     +   
Sbjct: 121 LEEKRQVSTKKAQQWCKSKGNIPYFETSAKEAINVDQAFETIARLALEQEKE 172

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score =  176 bits (448), Expect = 2e-56
 Identities = 74/180 (41%), Positives = 117/180 (65%), Gaps = 11/180 (6%)

Query: 5   YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQD----------G 54
           YDYL KLL +GDSGVGK+  L R+ D+ +   +I+T+G+DF+ + V  +           
Sbjct: 1   YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNSQGPDGTSGKA 60

Query: 55  KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SEN 113
             + LQ+WDTAGQERFR++T++++R A G ++++D+T ++SF NV+ W++++  +A  EN
Sbjct: 61  FRVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNVRNWMSQLQAHAYCEN 120

Query: 114 VNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRM 173
            + +L+GNK DL   + VS   A+  AD+ GIP+ ETSA +  NVE+A   +   I  RM
Sbjct: 121 PDIVLIGNKADLPDQREVSERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRM 180

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score =  168 bits (427), Expect = 1e-53
 Identities = 67/154 (43%), Positives = 92/154 (59%), Gaps = 2/154 (1%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           KL+++G  GVGKS L +RF    ++E Y  TI  D   + +  DG+T  L I DTAGQE 
Sbjct: 1   KLVVLGAGGVGKSALTIRFVSGEFVEEYDPTIE-DSYRKQIVVDGETYTLDILDTAGQEE 59

Query: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRY-ASENVNKLLVGNKCDLTAN 128
           F  +   Y R   G I+VY +T +ESF  +K    +I R    E+V  +LVGNKCDL   
Sbjct: 60  FSAMRDQYIRNGDGFILVYSITSRESFEEIKNIREQILRVKDKEDVPIVLVGNKCDLENE 119

Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAF 162
           + VS E  +A A+E G PF+ETSAK+  N+++ F
Sbjct: 120 RQVSTEEGEALAEEWGCPFLETSAKTNINIDELF 153

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score =  162 bits (411), Expect = 1e-50
 Identities = 71/201 (35%), Positives = 106/201 (52%), Gaps = 8/201 (3%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTI-KLQIWDTAGQ 67
           FK+L+IGD GVGK+ ++ R+    + + Y +TIGVDF ++ +E D  T+ +LQ+WD AGQ
Sbjct: 1   FKVLVIGDLGVGKTSIIKRYVHGVFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQ 60

Query: 68  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEID---RYASEN-VNKLLVGNKC 123
           ERF  +T  YY+GA G I+V+DVT   +F  V +W  ++D      +   +  LL+ NKC
Sbjct: 61  ERFGGMTRVYYKGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPALLLANKC 120

Query: 124 DL-TANKVVSYETAKAFADEIGIP-FMETSAKSATNVEQAFMAMAASI-KNRMASQPASN 180
           DL         E    F  E G   + ETSAK   N+E+A   +  +I KN    Q    
Sbjct: 121 DLKKERLAKDPEQMDQFCKENGFIGWFETSAKENINIEEAMRFLVKNILKNDKGLQSPEP 180

Query: 181 NARPPTVQIRGQPVNQKSGCC 201
           +        +    ++   CC
Sbjct: 181 DEDNVIDLKQETTTSKSKSCC 201

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score =  160 bits (407), Expect = 6e-50
 Identities = 74/217 (34%), Positives = 105/217 (48%), Gaps = 19/217 (8%)

Query: 5   YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDT 64
           +   FK++++GD GVGK+ LL R   D + E Y  TIG     +T+E   + IKLQ+WDT
Sbjct: 2   FMKEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDT 61

Query: 65  AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKC 123
           AGQE +R++   YYRGA+GI++VYD T +ES + + + WL E+   A ++V  LLVGNK 
Sbjct: 62  AGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKI 121

Query: 124 DL------------TANKVVSYETAKAFADE---IGIPFMETSAKSAT--NVEQAFMAMA 166
           DL              N+ V        A          +ETSAKS T  NV + F  + 
Sbjct: 122 DLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELL 181

Query: 167 ASIKNRMASQPASNNARPPTVQI-RGQPVNQKSGCCS 202
             +   +      N  R         +     S  C 
Sbjct: 182 RKLLEEIEKLVLKNELRQLDRLNNPIEQAALASFNCV 218

Length = 219

>gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

 Score =  153 bits (387), Expect = 3e-47
 Identities = 78/182 (42%), Positives = 110/182 (60%), Gaps = 5/182 (2%)

Query: 5   YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDT 64
           YDYL K LL+GDS VGK  +L    D S    Y   +G+D+K  T+  DG+ +KLQ+WDT
Sbjct: 3   YDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDT 62

Query: 65  AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCD 124
           +GQ RF TI  SY RGA GII+VYD+T++ SF+ + +W+ EID +A   V K+LVGN+  
Sbjct: 63  SGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAP-GVPKILVGNRLH 121

Query: 125 LTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARP 184
           L   + V+ E A+A+A+  G+ F E S     N+ ++F  +A  +  R    P S    P
Sbjct: 122 LAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELARIVLMRHGRPPQS----P 177

Query: 185 PT 186
           P 
Sbjct: 178 PQ 179

The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189

>gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily

 Score =  147 bits (373), Expect = 3e-45
 Identities = 65/165 (39%), Positives = 97/165 (58%), Gaps = 2/165 (1%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++F    +++ Y  TI  D   + +E DG+   L I DTAGQE
Sbjct: 3   YKLVVLGGGGVGKSALTIQFVQGHFVDEYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQE 61

Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDR-YASENVNKLLVGNKCDLTA 127
            F  +   Y R   G ++VY +TD++SF  + ++  +I R    ++V  +LVGNKCDL  
Sbjct: 62  EFSAMRDQYMRTGEGFLLVYSITDRQSFEEIAKFREQILRVKDRDDVPIVLVGNKCDLEN 121

Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
            +VVS E  K  A + G PF+ETSAK   NV++AF  +   I+  
Sbjct: 122 ERVVSTEEGKELARQWGCPFLETSAKERINVDEAFYDLVREIRKS 166

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166

>gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases

 Score =  146 bits (372), Expect = 4e-45
 Identities = 66/163 (40%), Positives = 99/163 (60%), Gaps = 2/163 (1%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++F    +++ Y  TI  D   + +E DG+   L I DTAGQE
Sbjct: 1   YKLVVLGSGGVGKSALTIQFIQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQE 59

Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDR-YASENVNKLLVGNKCDLTA 127
            F  +   Y R   G ++VY +TD++SF  +K++  +I R    ++V  +LVGNKCDL +
Sbjct: 60  EFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLES 119

Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIK 170
            +VVS E  K  A + G PF+ETSAK   NV++AF  +   I+
Sbjct: 120 ERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVREIR 162

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164

>gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9)

 Score =  139 bits (351), Expect = 5e-42
 Identities = 68/162 (41%), Positives = 99/162 (61%), Gaps = 6/162 (3%)

Query: 8   LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
           L K++L+GD GVGKS L+ R+  + +      TIGV+F  + +E DG  + LQIWDTAGQ
Sbjct: 5   LLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQ 64

Query: 68  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA----SENVNKLLVGNKC 123
           ERFR++ + +YRG+   ++ + V D +SF N+  W  E   YA     E+   +++GNK 
Sbjct: 65  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 124

Query: 124 DLTANKVVSYETAKAFADEIGI-PFMETSAKSATNVEQAFMA 164
           D+   + VS E A+A+  + G  P+ ETSAK ATNV  AF  
Sbjct: 125 DIP-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEE 165

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score =  137 bits (347), Expect = 2e-41
 Identities = 51/165 (30%), Positives = 98/165 (59%), Gaps = 5/165 (3%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           K++ +G+SGVGKSC++ R+ +  ++  Y+ TIG+D+ ++ V    K +++  +D +G   
Sbjct: 2   KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPE 61

Query: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRY-----ASENVNKLLVGNKCD 124
           +  + + +Y+   G+++VYDVTD++SF  +  WL E+ +        EN+  ++  NK D
Sbjct: 62  YLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKID 121

Query: 125 LTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
           LT ++ VS +  + +A+  G  + ETSA +   V + F  + +SI
Sbjct: 122 LTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQTLFSSI 166

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score =  131 bits (332), Expect = 4e-39
 Identities = 54/166 (32%), Positives = 82/166 (49%), Gaps = 15/166 (9%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           K++++GD  VGK+CLL+ +  + +   Y+ T+  D     V  DGK + L +WDTAGQE 
Sbjct: 2   KIVVVGDGAVGKTCLLISYTTNKFPTEYVPTV-FDNYSANVTVDGKQVNLGLWDTAGQEE 60

Query: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDL--- 125
           +  +    Y      ++ + V    SF NVK  W  EI  Y   NV  +LVG K DL   
Sbjct: 61  YDRLRPLSYPQTDVFLLCFSVDSPSSFENVKTKWYPEIKHYC-PNVPIILVGTKIDLRDD 119

Query: 126 --------TANKVVSYETAKAFADEIG-IPFMETSAKSATNVEQAF 162
                      K ++ E  +  A EIG + +ME SA +   +++ F
Sbjct: 120 GNTLKKLEKKQKPITPEEGEKLAKEIGAVKYMECSALTQEGLKEVF 165

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like

 Score =  130 bits (329), Expect = 9e-39
 Identities = 58/160 (36%), Positives = 92/160 (57%), Gaps = 3/160 (1%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVE--QDGKTIKLQIWDTAGQ 67
           K++++G+  VGKS ++ RF    + + Y  TIGVDF  + +   Q  + ++L +WDTAGQ
Sbjct: 2   KVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQ 61

Query: 68  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTA 127
           E F  IT +YYRGA   I+V+  TD+ESF  ++ W  +++     ++  +LV  K DL  
Sbjct: 62  EEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECG-DIPMVLVQTKIDLLD 120

Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAA 167
             V++ E A+A A  + +P   TS K   NV + F  +A 
Sbjct: 121 QAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLAE 160

Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3

 Score =  129 bits (326), Expect = 3e-38
 Identities = 61/163 (37%), Positives = 92/163 (56%), Gaps = 2/163 (1%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++F    ++  Y  TI  D   +  E DG+  +L I DTAGQE
Sbjct: 3   YKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCEIDGQWARLDILDTAGQE 61

Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTA 127
            F  +   Y R   G ++V+ VTD+ SF  V ++  +I R    +    +LVGNK DL  
Sbjct: 62  EFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEH 121

Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIK 170
            + VS E  +  A ++ IP++ETSAK   NV++AF  +   I+
Sbjct: 122 QRQVSREEGQELARQLKIPYIETSAKDRVNVDKAFHDLVRVIR 164

The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score =  128 bits (324), Expect = 6e-38
 Identities = 64/163 (39%), Positives = 98/163 (60%), Gaps = 2/163 (1%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K++++G  GVGKS L L+F  D ++E Y  T   D   + V  DG+ ++L I DTAGQE
Sbjct: 1   HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQLNILDTAGQE 59

Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRY-ASENVNKLLVGNKCDLTA 127
            +  I  +Y+R   G ++V+ +TD ESF  + ++  +I R    +NV  LLVGNKCDL  
Sbjct: 60  DYAAIRDNYFRSGEGFLLVFSITDMESFTALAEFREQILRVKEDDNVPLLLVGNKCDLED 119

Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIK 170
            + VS E A   A++ G+ ++ETSAK+  NV++ F  +   I+
Sbjct: 120 KRQVSVEEAANLAEQWGVNYVETSAKTRANVDKVFFDLVREIR 162

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c

 Score =  127 bits (321), Expect = 2e-37
 Identities = 63/156 (40%), Positives = 94/156 (60%), Gaps = 2/156 (1%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +K++++G  GVGKS L ++F   +++E Y  TI  DF  + +E D     L+I DTAG E
Sbjct: 2   YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTE 60

Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRY-ASENVNKLLVGNKCDLTA 127
           +F ++   Y +   G IVVY + +Q++F ++K   ++I R    E V  +LVGNK DL +
Sbjct: 61  QFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLES 120

Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFM 163
            + VS    +A A+E G PFMETSAKS T V + F 
Sbjct: 121 EREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFA 156

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B

 Score =  127 bits (320), Expect = 2e-37
 Identities = 60/163 (36%), Positives = 94/163 (57%), Gaps = 3/163 (1%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++   + +++ Y  TI  D   + V  DG+T  L I DTAGQE
Sbjct: 2   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 60

Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
            +  +   Y R   G + V+ +  ++SF ++  +  +I R   S++V  +LVGNKCDL A
Sbjct: 61  EYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDL-A 119

Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIK 170
            + VS    +  A   GIP++ETSAK+   VE+AF  +   I+
Sbjct: 120 ARTVSTRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVREIR 162

H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24)

 Score =  127 bits (320), Expect = 4e-37
 Identities = 63/197 (31%), Positives = 98/197 (49%), Gaps = 10/197 (5%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLES-YISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           K++++G   VGK+ L+ R+    +L   Y +TIG  F  + +    + + L IWDTAG E
Sbjct: 2   KVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSE 61

Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
           R+  ++  YYRGA   IV YD+TD  SF   K W+ E+ +   E+    L G K DL   
Sbjct: 62  RYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKEL-QNLEEHCKIYLCGTKSDLIEQ 120

Query: 129 ----KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARP 184
               + V +   + FADEI     ETS+K+  NV++ F  +A    +R  +Q  +     
Sbjct: 121 DRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQKVAEDFVSRANNQMNTEKG-- 178

Query: 185 PTVQIRGQPVNQKSGCC 201
             V +  +  +    CC
Sbjct: 179 --VDLGQKKNSYFYSCC 193

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193

>gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1

 Score =  126 bits (318), Expect = 5e-37
 Identities = 63/163 (38%), Positives = 96/163 (58%), Gaps = 3/163 (1%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++F    +++ Y  TI  D   + +E D +   L+I DTAG E
Sbjct: 2   YKLVVLGSGGVGKSALTVQFVQGIFVDKYDPTIE-DSYRKQIEVDCQQCMLEILDTAGTE 60

Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
           +F  +   Y +   G  +VY +T Q+SFN+++    +I R   +E+V  +LVGNKCDL  
Sbjct: 61  QFTAMRDLYIKNGQGFALVYSITAQQSFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 120

Query: 128 NKVVSYETAKAFADEIG-IPFMETSAKSATNVEQAFMAMAASI 169
            +VVS E  +  A + G  PF+ETSAKS  NV++ F  +   I
Sbjct: 121 ERVVSKEEGQNLARQWGNCPFLETSAKSKINVDEIFYDLVRQI 163

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score =  126 bits (317), Expect = 7e-37
 Identities = 66/164 (40%), Positives = 96/164 (58%), Gaps = 9/164 (5%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           K++++GD  VGK+CL+ RF  D + ++Y +TIGVDF++   E  G    LQ+WDTAGQER
Sbjct: 2   KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEVLGVPFSLQLWDTAGQER 61

Query: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASEN----VNKLLVGNKCDL 125
           F+ I S+YYRGA  II+V+D+TD  S  + +QWL +  +   EN    V   LVG K DL
Sbjct: 62  FKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALK---ENDPSSVLLFLVGTKKDL 118

Query: 126 TANKVVSYETAKA--FADEIGIPFMETSAKSATNVEQAFMAMAA 167
           ++    +     A   A E+   +   SA +  NV   F  +A+
Sbjct: 119 SSPAQYALMEQDAIKLAREMKAEYWAVSALTGENVRDFFFRVAS 162

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases

 Score =  125 bits (315), Expect = 2e-36
 Identities = 55/166 (33%), Positives = 88/166 (53%), Gaps = 16/166 (9%)

Query: 11  LLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF 70
           L+++GD  VGK+CLL+ +  +++ E Y+ T+  ++    VE DGK ++L +WDTAGQE +
Sbjct: 1   LVVVGDGAVGKTCLLIVYTTNAFPEDYVPTVFENY-SADVEVDGKPVELGLWDTAGQEDY 59

Query: 71  RTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTANK 129
             +    Y      ++ + V    SF NVK +W  E+  +   NV  +LVG K DL  +K
Sbjct: 60  DRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFC-PNVPIILVGTKLDLRNDK 118

Query: 130 V------------VSYETAKAFADEIG-IPFMETSAKSATNVEQAF 162
                        V+YE  +A A  IG + ++E SA +   V + F
Sbjct: 119 STLEELSKKKQEPVTYEQGQALAKRIGAVKYLECSALTQEGVREVF 164

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174

>gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28)

 Score =  124 bits (312), Expect = 1e-35
 Identities = 58/167 (34%), Positives = 92/167 (55%), Gaps = 4/167 (2%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGK-TIKLQIWDTAGQ 67
            K++++GD   GK+ L+ RFA + + +SY  TIG+DF  R +   G   + LQ+WD  GQ
Sbjct: 1   IKIVVLGDGASGKTSLIRRFAQEGFGKSYKQTIGLDFFSRRITLPGSLNVTLQVWDIGGQ 60

Query: 68  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNK---LLVGNKCD 124
           +    +   Y  GA  + +VYD+T+ +SF N++ WL+ + +   E+  K   +LVGNK D
Sbjct: 61  QIGGKMLDKYIYGAQAVCLVYDITNSQSFENLEDWLSVVKKVNEESETKPKMVLVGNKTD 120

Query: 125 LTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKN 171
           L  N+ V+ E    FA E  +  +  SAK+   V   F  +AA +  
Sbjct: 121 LEHNRQVTAEKHARFAQENDMESIFVSAKTGDRVFLCFQRIAAELLG 167

Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213

>gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2)

 Score =  122 bits (308), Expect = 1e-35
 Identities = 60/164 (36%), Positives = 93/164 (56%), Gaps = 5/164 (3%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           K++L+GDS VGKS L+ RF  D Y    +ST  +       + +GKTI +  WDTAGQER
Sbjct: 2   KIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQER 61

Query: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANK 129
           F+T+ +SYY  AH  I+V+DVT + ++ N+ +W  E+  Y  E +  ++V NK DL  + 
Sbjct: 62  FQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPE-IPCIVVANKIDLDPSV 120

Query: 130 VVSYETAKAFADEIGIPFMETSAKSATNVEQAFM-AMAASIKNR 172
               +    FA++  +P    SA   TNV + F  A+  ++  +
Sbjct: 121 T---QKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKLAVSYK 161

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score =  120 bits (304), Expect = 5e-35
 Identities = 51/157 (32%), Positives = 75/157 (47%), Gaps = 4/157 (2%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLE-SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
            K++++GD  VGKS LL R   +      Y      ++    +E+DGKT K  + DTAGQ
Sbjct: 2   IKIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQ 61

Query: 68  ERFRTITSSYYRGAHGIIVVYDVTD-QESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDL 125
           E +  I   YYR     + V+D+         + +    EI  +A   V  +LVGNK DL
Sbjct: 62  EDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESGVPIILVGNKIDL 121

Query: 126 TANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAF 162
              K +    A  FA   G P +  SA++  N++ AF
Sbjct: 122 RDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAF 157

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase

 Score =  120 bits (302), Expect = 2e-34
 Identities = 69/193 (35%), Positives = 98/193 (50%), Gaps = 18/193 (9%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           K+ ++G   VGKS L ++F +  ++ESY  TI   F  + +   G+   L+I DTAGQ+ 
Sbjct: 3   KIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIITYKGQEYHLEIVDTAGQDE 61

Query: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEI-DRYASENVNKLLVGNKCDLTAN 128
           +  +   Y  G HG I+VY VT ++SF  VK   ++I D    E+V  +LVGNK DL   
Sbjct: 62  YSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHME 121

Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQ 188
           + VS E  K  A+  G  F+E+SAK   NVE+AF  +   I+          N       
Sbjct: 122 RQVSAEEGKKLAESWGAAFLESSAKENENVEEAFELLIEEIEK-------VEN------- 167

Query: 189 IRGQPVNQKSGCC 201
               P  QKS C 
Sbjct: 168 --PLPPGQKSKCS 178

Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180

>gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms

 Score =  118 bits (297), Expect = 5e-34
 Identities = 61/164 (37%), Positives = 95/164 (57%), Gaps = 2/164 (1%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++F    ++E Y  TI   ++ + VE DG+   L+I DTAG E
Sbjct: 2   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTE 60

Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
           +F  +   Y +   G ++VY +T Q +FN+++    +I R   +E+V  +LVGNKCDL  
Sbjct: 61  QFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 120

Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKN 171
            +VV  E  +  A + G  F+ETSAK+  NV + F  +   I  
Sbjct: 121 ERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVRQINR 164

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase

 Score =  118 bits (297), Expect = 6e-34
 Identities = 59/156 (37%), Positives = 95/156 (60%), Gaps = 3/156 (1%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +K++++G  GVGKS L ++F  + ++ESY  TI   ++ + VE DG+   L+I DTAG E
Sbjct: 2   YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYR-KQVEIDGRQCDLEILDTAGTE 60

Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
           +F  +   Y +   G ++VY VT + S N + +   ++ R   S+NV  +LVGNK DL  
Sbjct: 61  QFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLED 120

Query: 128 NKVVSYETAKAFADEIG-IPFMETSAKSATNVEQAF 162
           ++ VS E   + + + G +PF ETSA+  TNV++ F
Sbjct: 121 DRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVF 156

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168

>gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases)

 Score =  116 bits (293), Expect = 4e-33
 Identities = 56/164 (34%), Positives = 97/164 (59%), Gaps = 4/164 (2%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           KL+++GD GVGK+ L ++   + ++E+Y  TI   ++ + V  DG+   L++ DTAGQE 
Sbjct: 1   KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVV-VDGQPCMLEVLDTAGQEE 59

Query: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRY---ASENVNKLLVGNKCDLT 126
           +  +   + R   G I+VY +T + +F  V+++  +I R    ++ +V  ++VGNKCD  
Sbjct: 60  YTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKV 119

Query: 127 ANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIK 170
             + VS E   A A  +G  F+E SAK+  NVE+AF  +  +++
Sbjct: 120 YEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRALR 163

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190

>gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like

 Score =  117 bits (294), Expect = 5e-33
 Identities = 59/192 (30%), Positives = 101/192 (52%), Gaps = 28/192 (14%)

Query: 6   DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFK--IRTVE-QDGKTIKLQIW 62
           D   K++++GD G GK+CLL+ +A  S+ E Y+ T+   F+  + T++  +GK I+L +W
Sbjct: 1   DLKVKIVVVGDGGCGKTCLLMVYAQGSFPEEYVPTV---FENYVTTLQVPNGKIIELALW 57

Query: 63  DTAGQE---RFRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLNEIDRYASENVNKLL 118
           DTAGQE   R R ++   Y     I++ Y V +  S +NV+ +W  E++ +       +L
Sbjct: 58  DTAGQEDYDRLRPLS---YPDVDVILICYSVDNPTSLDNVEDKWYPEVNHFC-PGTPIVL 113

Query: 119 VGNKCDLTANK------------VVSYETAKAFADEIG-IPFMETSAKSATNVEQAF-MA 164
           VG K DL  +K             V+ E  ++ A  IG + ++E SAK   NV++ F  A
Sbjct: 114 VGLKTDLRKDKNSVSKLRAQGLEPVTPEQGESVAKSIGAVAYIECSAKLMENVDEVFDAA 173

Query: 165 MAASIKNRMASQ 176
           +  ++     + 
Sbjct: 174 INVALSKSGRAA 185

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197

>gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4)

 Score =  113 bits (285), Expect = 4e-32
 Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 7/164 (4%)

Query: 10  KLLLIGDSGVGKSCLLLRFADD--SYLESYISTIGVDFKIRTV--EQDGKTIKLQIWDTA 65
           +  ++GD  VGKS L+  F  D  ++ ++Y  T G D  ++TV       +++L I+D+A
Sbjct: 2   QCAVVGDPAVGKSALVQMFHSDGATFQKNYTMTTGCDLVVKTVPVPDTSDSVELFIFDSA 61

Query: 66  GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNK--LLVGNKC 123
           GQE F  +  + +     + VVYDVT++ SFNN  +W+N + R  S  ++   +LVGNKC
Sbjct: 62  GQELFSDMVENVWEQPAVVCVVYDVTNEVSFNNCSRWINRV-RTHSHGLHTPGVLVGNKC 120

Query: 124 DLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAA 167
           DLT  + V    A+A A    + F ETSAK     E  F+++A 
Sbjct: 121 DLTDRREVDAAQAQALAQANTLKFYETSAKEGVGYEAPFLSLAR 164

RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167

>gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional

 Score =  114 bits (285), Expect = 4e-32
 Identities = 65/159 (40%), Positives = 96/159 (60%), Gaps = 2/159 (1%)

Query: 31  DSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDV 90
           D++  +Y STIG+DF  +T+  D   ++LQ+WDTAGQERFR++  SY R +   IVVYD+
Sbjct: 3   DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDI 62

Query: 91  TDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMET 150
           T+++SF N  +W+ +I     ++V   LVGNK DL   + V+YE     A E    F ET
Sbjct: 63  TNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHET 122

Query: 151 SAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQI 189
           SAK+  N++  F  +AA + N   S   SN+A    +Q+
Sbjct: 123 SAKAGHNIKVLFKKIAAKLPNLDNSN--SNDANVVDIQL 159

Length = 176

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score =  113 bits (284), Expect = 5e-32
 Identities = 50/164 (30%), Positives = 73/164 (44%), Gaps = 13/164 (7%)

Query: 12  LLIGDSGVGKSCLLLRFADDSYLES---YISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +++G  GVGKS LL         E      +T   D      E D   +KL + DT G +
Sbjct: 1   VVVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVY--VKELDKGKVKLVLVDTPGLD 58

Query: 69  RF-----RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKC 123
            F       +     RGA  I++V D TD+ES  + K  L  + R   E +  +LVGNK 
Sbjct: 59  EFGGLGREELARLLLRGADLILLVVDSTDRESEEDAK--LLILRRLRKEGIPIILVGNKI 116

Query: 124 DLTANKVVSYET-AKAFADEIGIPFMETSAKSATNVEQAFMAMA 166
           DL   + V      +  A  +G+P  E SAK+   V++ F  + 
Sbjct: 117 DLLEEREVEELLRLEELAKILGVPVFEVSAKTGEGVDELFEKLI 160

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional

 Score =  113 bits (285), Expect = 6e-32
 Identities = 59/163 (36%), Positives = 92/163 (56%), Gaps = 2/163 (1%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++F  + +++ Y  TI   ++ +    D +T  L I DTAGQE
Sbjct: 6   YKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYR-KQCVIDEETCLLDILDTAGQE 64

Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASEN-VNKLLVGNKCDLTA 127
            +  +   Y R   G + VY +T + SF  +  +  +I R   ++ V  +LVGNKCDL +
Sbjct: 65  EYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDS 124

Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIK 170
            + VS    +  A   GIPF+ETSAK   NV++AF  +   I+
Sbjct: 125 ERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYELVREIR 167

Length = 189

>gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases

 Score =  112 bits (281), Expect = 2e-31
 Identities = 52/158 (32%), Positives = 84/158 (53%), Gaps = 3/158 (1%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           FKL+L+GD G GK+  + R     + + Y++T+GV+        +   I+  +WDTAGQE
Sbjct: 1   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQE 60

Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
           +F  +   YY      I+++DVT + ++ NV  W  ++ R   EN+  +L GNK D+   
Sbjct: 61  KFGGLRDGYYIQGQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 119

Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMA 166
           KV        F  +  + + E SAKS  N E+ F+ +A
Sbjct: 120 KV--KPKQITFHRKKNLQYYEISAKSNYNFEKPFLWLA 155

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166

>gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional

 Score =  111 bits (280), Expect = 8e-31
 Identities = 58/174 (33%), Positives = 90/174 (51%), Gaps = 15/174 (8%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           FKL+L+GD GVGK+  + R     + + YI T+GV+        +   I   +WDTAGQE
Sbjct: 10  FKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQE 69

Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
           +F  +   YY      I+++DVT + ++ NV  W  +I R   EN+  +LVGNK D+   
Sbjct: 70  KFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVR-VCENIPIVLVGNKVDVKDR 128

Query: 129 KVVSYETAKA----FADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPA 178
           +V      KA    F  +  + + + SAKS  N E+ F+ +A     R+ + P 
Sbjct: 129 QV------KARQITFHRKKNLQYYDISAKSNYNFEKPFLWLA----RRLTNDPN 172

Length = 215

>gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric)

 Score =  108 bits (270), Expect = 8e-30
 Identities = 58/171 (33%), Positives = 88/171 (51%), Gaps = 3/171 (1%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +K++++G  GVGKS + ++F   S+ + +  TI   +K +    D +   L I DTAGQ 
Sbjct: 3   YKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKTQAR-IDNEPALLDILDTAGQA 61

Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
            F  +   Y R   G I+ Y VTD+ SF    ++   I R   +E++  +LVGNK DL  
Sbjct: 62  EFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKELITRVRLTEDIPLVLVGNKVDLEQ 121

Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPA 178
            + V+ E  +  A E   PF ETSA     ++ AF  +   I+ R  S PA
Sbjct: 122 QRQVTTEEGRNLAREFNCPFFETSAALRFYIDDAFHGLVREIR-RKESMPA 171

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172

>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

 Score =  105 bits (263), Expect = 8e-29
 Identities = 54/158 (34%), Positives = 81/158 (51%), Gaps = 6/158 (3%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           K+ ++G SGVGKS L +RF    ++  Y   +   +  R V  DG+ + L+I DT GQ++
Sbjct: 1   KIAVLGASGVGKSALTVRFLTKRFIGEYEPNLESLYS-RQVTIDGEQVSLEIQDTPGQQQ 59

Query: 70  FRT--ITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASE--NVNKLLVGNKCDL 125
                      R A G ++VY +TD+ SF+ V Q L  I         +  +LVGNK DL
Sbjct: 60  NEDPESLERSLRWADGFVLVYSITDRSSFDVVSQLLQLIREIKKRDGEIPVILVGNKADL 119

Query: 126 TANKVVSYETAKAFADEIGIPFMETSA-KSATNVEQAF 162
             ++ VS E  +  A E+G  F E SA ++   V+  F
Sbjct: 120 LHSRQVSTEEGQKLALELGCLFFEVSAAENYLEVQNVF 157

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166

>gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI)

 Score =  100 bits (251), Expect = 5e-27
 Identities = 54/157 (34%), Positives = 81/157 (51%), Gaps = 4/157 (2%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +++++ G  GVGKS L+LRF   ++ ESYI TI   ++ + +        LQI DT G  
Sbjct: 2   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCSKSICTLQITDTTGSH 60

Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNK---LLVGNKCDL 125
           +F  +        H  I+VY +T ++S   +K     I      N+ K   +LVGNKCD 
Sbjct: 61  QFPAMQRLSISKGHAFILVYSITSKQSLEELKPIYELICEIKGNNLEKIPIMLVGNKCDE 120

Query: 126 TANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAF 162
           + ++ VS     A A      FMETSAK+  NV++ F
Sbjct: 121 SPSREVSSSEGAALARTWNCAFMETSAKTNHNVQELF 157

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional

 Score =  101 bits (253), Expect = 8e-27
 Identities = 60/190 (31%), Positives = 93/190 (48%), Gaps = 20/190 (10%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           FKL+++GD G GK+  + R     + + Y  TIGV+        +   I+   WDTAGQE
Sbjct: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73

Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
           +F  +   YY      I+++DVT + ++ NV  W  ++ R   EN+  +L GNK D+   
Sbjct: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNR 132

Query: 129 KV----VSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQP-----AS 179
           +V    V++   K       + + E SAKS  N E+ F+ +A     ++A  P      S
Sbjct: 133 QVKAKQVTFHRKK------NLQYYEISAKSNYNFEKPFLYLA----RKLAGDPNLHFVES 182

Query: 180 NNARPPTVQI 189
               PP VQI
Sbjct: 183 PALAPPEVQI 192

Length = 219

>gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases

 Score = 99.4 bits (248), Expect = 5e-26
 Identities = 58/183 (31%), Positives = 91/183 (49%), Gaps = 3/183 (1%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           ++++L+GDSGVGKS L   F    Y +S     G D   RTV  DG+   L ++D   QE
Sbjct: 1   YRVVLLGDSGVGKSSLANIFTAGVYEDSAYEASGDDTYERTVSVDGEEATLVVYDHWEQE 60

Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRY-ASENVNKLLVGNKCDLTA 127
               +  S  +     ++VY VTD+ SF    +   ++ R   +E++  +LVGNK DL  
Sbjct: 61  DGMWLEDSCMQVGDAYVIVYSVTDRSSFEKASELRIQLRRARQAEDIPIILVGNKSDLVR 120

Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTV 187
           ++ VS +  +A A      F+ETSA    NV++ F  +   ++ R  S+    N R    
Sbjct: 121 SREVSVQEGRACAVVFDCKFIETSAALQHNVDELFEGIVRQVRLRRDSKEK--NTRRMAS 178

Query: 188 QIR 190
           + R
Sbjct: 179 RKR 181

RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219

>gnl|CDD|206662 cd01870, RhoA_like, Ras homology family A (RhoA)-like includes RhoA, RhoB and RhoC

 Score = 97.9 bits (244), Expect = 7e-26
 Identities = 55/170 (32%), Positives = 92/170 (54%), Gaps = 22/170 (12%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE- 68
           KL+++GD   GK+CLL+ F+ D + E Y+ T+  ++ +  +E DGK ++L +WDTAGQE 
Sbjct: 3   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 61

Query: 69  --RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDL 125
             R R ++   Y     I++ + +   +S  N+ + W  E+ ++   NV  +LVGNK DL
Sbjct: 62  YDRLRPLS---YPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDL 117

Query: 126 ------------TANKVVSYETAKAFADEIG-IPFMETSAKSATNVEQAF 162
                          + V  E  +A A++IG   ++E SAK+   V + F
Sbjct: 118 RNDEHTIRELAKMKQEPVKPEEGRAMAEKIGAFGYLECSAKTKEGVREVF 167

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranylgeranylated forms; however, RhoB can be present in palmitoylated, farnesylated, and geranylgeranylated forms. RhoA and RhoC are highly relevant for tumor progression and invasiveness; however, RhoB has recently been suggested to be a tumor suppressor. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42

 Score = 97.5 bits (243), Expect = 9e-26
 Identities = 51/167 (30%), Positives = 87/167 (52%), Gaps = 16/167 (9%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           K +L+GD  VGK+ L++ +  + Y   Y+ T   +F +  V  DGK ++LQ+ DTAGQ+ 
Sbjct: 2   KCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVV-VLVDGKPVRLQLCDTAGQDE 60

Query: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTAN 128
           F  +    Y      ++ + V +  SF N+  +W+ EI ++ +     +LVG + DL  +
Sbjct: 61  FDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKH-NPKAPIILVGTQADLRTD 119

Query: 129 ------------KVVSYETAKAFADEIG-IPFMETSAKSATNVEQAF 162
                       K VS   AKA A++IG   ++E SA +  N+++ F
Sbjct: 120 VNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVF 166

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20)

 Score = 94.2 bits (234), Expect = 5e-24
 Identities = 65/226 (28%), Positives = 104/226 (46%), Gaps = 41/226 (18%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           K++L+GD  VGK+ LL R+ +  + ++ +ST+G  F ++   Q G    + IWDTAG+E+
Sbjct: 2   KVVLLGDMNVGKTSLLHRYMERRFKDT-VSTVGGAFYLK---QWG-PYNISIWDTAGREQ 56

Query: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLT--- 126
           F  + S Y RGA  +I+ YDV++ +S   ++     +   A+E+    +VGNK DLT   
Sbjct: 57  FHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEG 116

Query: 127 ----------------ANKVVSYETAKAFADEI--------------GIPFMETSAKSAT 156
                             + V+ E AKAF   I                   ETSAK+  
Sbjct: 117 ALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGY 176

Query: 157 NVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPVNQ-KSGCC 201
           NV++ F  +   +   + +Q A  N       +      + KS CC
Sbjct: 177 NVDELFEYLFNLVLPLILAQRAEANR--TQGTVNLPNPKRSKSKCC 220

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220

>gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8

 Score = 92.1 bits (229), Expect = 1e-23
 Identities = 57/176 (32%), Positives = 96/176 (54%), Gaps = 18/176 (10%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           K++L+GDS  GK+ LL  FA DS+ E+Y+ T+  ++   + E D + I+L +WDT+G   
Sbjct: 3   KIVLVGDSQCGKTALLQVFAKDSFPENYVPTVFENYTA-SFEVDKQRIELSLWDTSGSPY 61

Query: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLT-- 126
           +  +    Y  +  +++ +D++  E+ ++V K+W  E+  +   N   LLVG K DL   
Sbjct: 62  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEVREFCP-NTPVLLVGCKSDLRTD 120

Query: 127 -------ANKV---VSYETAKAFADEIG-IPFMETSAKSATN-VEQAF-MAMAASI 169
                  +NK    VS+E  +  A +IG   ++E SAK++ N V   F MA  A +
Sbjct: 121 LSTLTELSNKRQIPVSHEQGRNLAKQIGAAAYVECSAKTSENSVRDVFEMATLACL 176

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176

>gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases)

 Score = 90.3 bits (224), Expect = 9e-23
 Identities = 55/167 (32%), Positives = 84/167 (50%), Gaps = 14/167 (8%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           KL+++GD   GK+ LL  F    + E Y  T+  ++ +     DGK ++L +WDTAGQE 
Sbjct: 3   KLVIVGDGACGKTSLLYVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEE 61

Query: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDL--- 125
           +  +    Y  AH I++ + +   +S  NV+  W+ E+ RY   NV  +LVG K DL   
Sbjct: 62  YERLRPLSYSKAHVILIGFAIDTPDSLENVRTKWIEEVRRYCP-NVPVILVGLKKDLRQE 120

Query: 126 -------TANKVVSYETAKAFADEIGI-PFMETSAKSATNVEQAFMA 164
                    ++ V  + AK  A  IG   +ME SA +   V+  F A
Sbjct: 121 AVAKGNYATDEFVPIQQAKLVARAIGAKKYMECSALTGEGVDDVFEA 167

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190

>gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1)

 Score = 89.8 bits (223), Expect = 1e-22
 Identities = 45/158 (28%), Positives = 84/158 (53%), Gaps = 6/158 (3%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           K+ L+GD+ +GK+ L++++ +  + E YI T+GV+F  +T+   G  I   IWD  GQ  
Sbjct: 2   KIGLLGDAQIGKTSLMVKYVEGEFDEEYIQTLGVNFMEKTISIRGTEITFSIWDLGGQRE 61

Query: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANK 129
           F  +     + A  I+ ++D+T + + N++K+W  +  R  ++    +LVG K DL A+ 
Sbjct: 62  FINMLPLVCKDAVAILFMFDLTRKSTLNSIKEWYRQA-RGFNKTAIPILVGTKYDLFADL 120

Query: 130 VVSY-----ETAKAFADEIGIPFMETSAKSATNVEQAF 162
                    + A+ +A  +  P +  S   + NV++ F
Sbjct: 121 PPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIF 158

Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182

>gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases)

 Score = 89.5 bits (222), Expect = 2e-22
 Identities = 58/180 (32%), Positives = 86/180 (47%), Gaps = 12/180 (6%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           K++++GD   GK+ LL  F    + + Y  T+  ++ I  +  DG  ++L +WDTAGQE 
Sbjct: 2   KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENY-IHDIFVDGLAVELSLWDTAGQEE 60

Query: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTAN 128
           F  + S  Y   H I++ + V + +S  NV+ +WL EI  +    V  +LV  KCDL   
Sbjct: 61  FDRLRSLSYADTHVIMLCFSVDNPDSLENVESKWLAEIRHHC-PGVKLVLVALKCDLREP 119

Query: 129 --------KVVSYETAKAFADEIG-IPFMETSAKSATNVEQAFMAMAASIKNRMASQPAS 179
                     +SYE   A A  I    ++E SAK    V +AF   A    N     P S
Sbjct: 120 RNERDRGTHTISYEEGLAVAKRINACRYLECSAKLNRGVNEAFTEAARVALNARPPHPHS 179

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185

>gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

 Score = 89.7 bits (222), Expect = 2e-22
 Identities = 52/181 (28%), Positives = 88/181 (48%), Gaps = 12/181 (6%)

Query: 14  IGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI 73
           +GD G GK+  + R     + + Y++T+GV+        +   I+  +WDTAGQE+F  +
Sbjct: 1   VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGL 60

Query: 74  TSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSY 133
              YY      I+++DVT + ++ NV  W  ++ R   EN+  +L GNK D+   KV + 
Sbjct: 61  RDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDVKDRKVKAK 119

Query: 134 ETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQP-----ASNNARPPTVQ 188
                F  +  + + + SAKS  N E+ F+ +A     ++   P     A     PP V 
Sbjct: 120 SI--TFHRKKNLQYYDISAKSNYNFEKPFLWLA----RKLIGDPNLEFVAMPALAPPEVV 173

Query: 189 I 189
           +
Sbjct: 174 M 174

Ran is involved in the active transport of proteins through nuclear pores. Length = 200

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 87.1 bits (216), Expect = 2e-22
 Identities = 39/117 (33%), Positives = 60/117 (51%), Gaps = 4/117 (3%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           K+++IGD G GKS LL +     +    +   G    + T+E DG T  L IWD  G+E 
Sbjct: 1   KVVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGLLNIWDFGGREE 60

Query: 70  FRTITSSYYRGAHGIIVVYDVTDQESFN---NVKQWLNEIDRYASENVNKLLVGNKC 123
            +     + + A  I++VYD+TD+ES N    +  WL  + +     +  +LVGNK 
Sbjct: 61  LKFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNLRKLGG-KIPVILVGNKL 116

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|206705 cd04133, Rop_like, Rho-related protein from plants (Rop)-like

 Score = 86.8 bits (215), Expect = 1e-21
 Identities = 55/167 (32%), Positives = 89/167 (53%), Gaps = 14/167 (8%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           K + +GD  VGK+C+L+ +  +++   Y+ T+  +F    V  DG T+ L +WDTAGQE 
Sbjct: 3   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGNTVNLGLWDTAGQED 61

Query: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTAN 128
           +  +    YRGA   ++ + +  + S+ NV K+W+ E+  YA   V  +LVG K DL  +
Sbjct: 62  YNRLRPLSYRGADVFLLAFSLISKASYENVLKKWIPELRHYAP-GVPIVLVGTKLDLRDD 120

Query: 129 K--------VVSYETAKA--FADEIGIP-FMETSAKSATNVEQAFMA 164
           K         V   TA+      +IG   ++E S+K+  NV+  F A
Sbjct: 121 KQFFADHPGAVPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDA 167

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, Rop1, Rop3, and Rop5 are all involved in pollen-tube growth; Rop2 plays a role in response to low-oxygen environments, cell-morphology, and root-hair development; root-hair development is also regulated by Rop4 and Rop6; Rop6 is also responsible for ABA response, and ABA response is also regulated by Rop10. Plants retain some of the regulatory mechanisms that are shared by other members of the Rho family, but have also developed a number of unique modes for regulating Rops. Unique RhoGEFs have been identified that are exclusively active toward Rop proteins, such as those containing the domain PRONE (plant-specific Rop nucleotide exchanger). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

 Score = 83.4 bits (207), Expect = 2e-20
 Identities = 36/119 (30%), Positives = 61/119 (51%), Gaps = 10/119 (8%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           ++L++G  G GK+ +L +      + + I TIG  F + TVE   K +K  +WD  GQ++
Sbjct: 1   RILMLGLDGAGKTTILYKLKLGE-VVTTIPTIG--FNVETVEY--KNVKFTVWDVGGQDK 55

Query: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEI---DRYASENVNKLLVGNKCDL 125
            R +   YY    G+I V D +D+E     K  L+++   +    +    L++ NK DL
Sbjct: 56  IRPLWKHYYENTDGLIFVVDSSDRERIEEAKNELHKLLNEEEL--KGAPLLILANKQDL 112

Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158

>gnl|CDD|133277 cd01875, RhoG, Ras homolog family, member G (RhoG) of small guanosine triphosphatases (GTPases)

 Score = 83.9 bits (207), Expect = 3e-20
 Identities = 48/167 (28%), Positives = 87/167 (52%), Gaps = 16/167 (9%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           K +++GD  VGK+CLL+ +  +++ + YI T+  ++  +T   DG+T+ L +WDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTA-VDGRTVSLNLWDTAGQEE 63

Query: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTAN 128
           +  + +  Y   +  I+ + +    S+ NV+ +W  E+  +   NV  LLVG K DL  +
Sbjct: 64  YDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCP-NVPILLVGTKKDLRND 122

Query: 129 KVV------------SYETAKAFADEIG-IPFMETSAKSATNVEQAF 162
                          + +   A A +I  + ++E SA +   V++ F
Sbjct: 123 ADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVF 169

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 191

>gnl|CDD|206663 cd01871, Rac1_like, Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)-like consists of Rac1, Rac2 and Rac3

 Score = 81.8 bits (202), Expect = 9e-20
 Identities = 50/167 (29%), Positives = 82/167 (49%), Gaps = 16/167 (9%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           K +++GD  VGK+CLL+ +  +++   YI T+  D     V  DGK + L +WDTAGQE 
Sbjct: 3   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 61

Query: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTAN 128
           +  +    Y      ++ + +    SF NV+ +W  E+  +   N   +LVG K DL  +
Sbjct: 62  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDD 120

Query: 129 KV------------VSYETAKAFADEIG-IPFMETSAKSATNVEQAF 162
           K             ++Y    A A EIG + ++E SA +   ++  F
Sbjct: 121 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 167

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleotide association and is more efficiently activated by the RacGEF Tiam1. Both Rac1 and Rac3 have been implicated in the regulation of cell migration and invasion in human metastatic breast cancer. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family

 Score = 81.8 bits (202), Expect = 2e-19
 Identities = 52/188 (27%), Positives = 86/188 (45%), Gaps = 13/188 (6%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           +L+ +G +GVGK+ L+ RF  D++   +  T+  +   +  E  G  + + I DT+G   
Sbjct: 1   RLVFMGAAGVGKTALIQRFLYDTFEPKHRRTVE-ELHSKEYEVAGVKVTIDILDTSGSYS 59

Query: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEI-DRYASENVNKLLVGNKCDLTAN 128
           F  +     +      +VY V D ESF  VK+   EI +    + V  ++VGNK D  A 
Sbjct: 60  FPAMRKLSIQNGDAFALVYSVDDPESFEEVKRLREEILEVKEDKFVPIVVVGNKIDSLAE 119

Query: 129 KVVSYETAKAFAD-EIGIPFMETSAKSATNVEQAFMAMAA----------SIKNRMASQP 177
           + V    A +  + +    F+E SAK   NV + F  +            +++ R  S P
Sbjct: 120 RQVEAADALSTVELDWNNGFVEASAKDNENVTEVFKELLQQANLPSWLSPALRRRRESAP 179

Query: 178 ASNNARPP 185
           +    RPP
Sbjct: 180 SEIQRRPP 187

Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197

>gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases

 Score = 80.5 bits (198), Expect = 4e-19
 Identities = 48/162 (29%), Positives = 84/162 (51%), Gaps = 16/162 (9%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           K++++GDS  GK+ LL  FA D + E+Y+ T+  ++   + E D + I+L +WDT+G   
Sbjct: 7   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTA-SFEIDTQRIELSLWDTSGSPY 65

Query: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTAN 128
           +  +    Y  +  +++ +D++  E+ ++V K+W  EI  +   N   LLVG K DL  +
Sbjct: 66  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTD 124

Query: 129 KV------------VSYETAKAFADEIG-IPFMETSAKSATN 157
                         VSY+     A +IG   ++E SA  + N
Sbjct: 125 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 166

Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182

>gnl|CDD|206707 cd04135, Tc10, Rho GTPase TC10 (Tc10)

 Score = 78.9 bits (194), Expect = 1e-18
 Identities = 53/168 (31%), Positives = 87/168 (51%), Gaps = 16/168 (9%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K +++GD  VGK+CLL+ +A+D++ E Y+ T+  D    +V   GK   L ++DTAGQE
Sbjct: 1   LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTAGQE 59

Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTA 127
            +  +    Y      ++ + V +  SF NVK +W+ E+  YA  NV  LL+G + DL  
Sbjct: 60  DYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP-NVPYLLIGTQIDLRD 118

Query: 128 N------------KVVSYETAKAFADEIGIP-FMETSAKSATNVEQAF 162
           +            K ++ E  +  A EIG   ++E SA +   ++  F
Sbjct: 119 DPKTLARLNDMKEKPITVEQGQKLAKEIGACCYVECSALTQKGLKTVF 166

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interactions with CFTR-associated ligand (CAL). The GTP-bound form of TC10 directs the trafficking of CFTR from the juxtanuclear region to the secretory pathway toward the plasma membrane, away from CAL-mediated DFTR degradation in the lysosome. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family

 Score = 74.3 bits (183), Expect = 5e-17
 Identities = 31/117 (26%), Positives = 57/117 (48%), Gaps = 4/117 (3%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDF-KIRTVEQDGKTIKLQIWDTAGQE 68
           KL+L+G  GVGK+ L  +   + +     ST G++    +    + K I+L +WD  GQE
Sbjct: 3   KLMLVGQGGVGKTSLCKQLIGEKFDGDESSTHGINVQDWKIPAPERKKIRLNVWDFGGQE 62

Query: 69  RFRTITSSYYRGAHGI-IVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCD 124
            +   T  ++  +  + ++V+D+   +  + V  WL +I  +       +LVG   D
Sbjct: 63  IYHA-THQFFLTSRSLYLLVFDLRTGDEVSRVPYWLRQIKAFGG-VSPVILVGTHID 117

RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161

>gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases

 Score = 72.0 bits (177), Expect = 4e-16
 Identities = 40/114 (35%), Positives = 62/114 (54%), Gaps = 5/114 (4%)

Query: 13  LIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT 72
           L+G    GK+ L+   A   + E  I T+G  F +R V +   TIK  +WD  GQ RFR+
Sbjct: 4   LVGLQNSGKTTLVNVIASGQFSEDTIPTVG--FNMRKVTKGNVTIK--VWDLGGQPRFRS 59

Query: 73  ITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNE-IDRYASENVNKLLVGNKCDL 125
           +   Y RG + I+ V D  D+E     K  L++ +++ + E +  L++GNK DL
Sbjct: 60  MWERYCRGVNAIVYVVDAADREKLEVAKNELHDLLEKPSLEGIPLLVLGNKNDL 113

Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159

>gnl|CDD|206737 cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases

 Score = 72.4 bits (177), Expect = 9e-16
 Identities = 48/189 (25%), Positives = 92/189 (48%), Gaps = 17/189 (8%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           KL+L+GD   GK+ +L   A D Y E+Y+ T+  ++    +E + + ++L +WDT+G   
Sbjct: 15  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTA-CLETEEQRVELSLWDTSGSPY 73

Query: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNN-VKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
           +  +    Y  +  +++ +D++  E F++ +K+W  EI  Y   +   LL+G K DL  +
Sbjct: 74  YDNVRPLCYSDSDAVLLCFDISRPEIFDSALKKWRAEILDYCP-STRILLIGCKTDLRTD 132

Query: 129 ------------KVVSYETAKAFADEIGIP-FMETSA-KSATNVEQAFMAMAASIKNRMA 174
                         +SYE   A A ++G   ++E SA  S  ++   F   +    N+++
Sbjct: 133 LSTLMELSNQKQAPISYEQGCAMAKQLGAEAYLECSAFTSEKSIHSIFRTASLLCINKLS 192

Query: 175 SQPASNNAR 183
                +  R
Sbjct: 193 PLAKKSPVR 201

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 232

>gnl|CDD|206736 cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases

 Score = 72.0 bits (176), Expect = 1e-15
 Identities = 50/199 (25%), Positives = 96/199 (48%), Gaps = 17/199 (8%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           K++++GD+  GK+ LL  FA D+Y ESY+ T+  ++   + E D   I+L +WDT+G   
Sbjct: 3   KIVVVGDTQCGKTALLHVFAKDNYPESYVPTVFENYTA-SFEIDKHRIELNMWDTSGSSY 61

Query: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTAN 128
           +  +    Y  +  +++ +D++  E+ ++V K+W  E   +   N   +LVG K D+  +
Sbjct: 62  YDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCP-NAKLVLVGCKLDMRTD 120

Query: 129 KV------------VSYETAKAFADEIG-IPFMETSAKSATN-VEQAFMAMAASIKNRMA 174
                         V++E     A ++G + ++E S++ + N V   F     +   R  
Sbjct: 121 LSTLRELSKQRLIPVTHEQGSLLARQLGAVAYVECSSRMSENSVRDVFHVTTLASVRREH 180

Query: 175 SQPASNNARPPTVQIRGQP 193
                + +R    +I  QP
Sbjct: 181 PSLKRSTSRRGLKRISQQP 199

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in spermatocytes and early spermatids, with male-germ-cell Rac GTPase-activating protein (MgcRacGAP), where it localizes to the Golgi-derived pro-acrosomal vesicle. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 221

>gnl|CDD|206664 cd01874, Cdc42, cell division cycle 42 (Cdc42) is a small GTPase of the Rho family

 Score = 67.6 bits (165), Expect = 2e-14
 Identities = 46/167 (27%), Positives = 81/167 (48%), Gaps = 16/167 (9%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           K +++GD  VGK+CLL+ +  + +   Y+ T+  ++ + TV   G+   L ++DTAGQE 
Sbjct: 3   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 61

Query: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDL--- 125
           +  +    Y      +V + V    SF NVK+ W+ EI  +       LLVG + DL   
Sbjct: 62  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 120

Query: 126 ---------TANKVVSYETAKAFADEIG-IPFMETSAKSATNVEQAF 162
                       K ++ ET +  A ++  + ++E SA +   ++  F
Sbjct: 121 PSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVF 167

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addition, Cdc42 has been implicated in a number of human diseases through interactions with its regulators and downstream effectors. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases

 Score = 67.5 bits (165), Expect = 3e-14
 Identities = 37/120 (30%), Positives = 61/120 (50%), Gaps = 5/120 (4%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDF-KIRTVEQDGKTIKLQIWDTAGQ 67
             ++++G    GK+ +L R   + ++ + + T G +  KI+    + K +    WD  GQ
Sbjct: 4   LHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNAKGVTFHFWDVGGQ 62

Query: 68  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASEN--VNKLLVGNKCDL 125
           E+ R +  SY R   GI+ V D  D E     K  L++I ++ SEN  V  L++ NK DL
Sbjct: 63  EKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITKF-SENQGVPVLVLANKQDL 121

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183

>gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family

 Score = 67.2 bits (165), Expect = 3e-14
 Identities = 32/119 (26%), Positives = 57/119 (47%), Gaps = 6/119 (5%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            ++L++G    GK+ +L +      + + I TIG  F + TV    K +K  +WD  GQE
Sbjct: 15  MRILILGLDNAGKTTILYKLKLGE-IVTTIPTIG--FNVETVTY--KNVKFTVWDVGGQE 69

Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEI-DRYASENVNKLLVGNKCDLT 126
             R +  +Y+     +I V D  D++     K+ L+ + +     +   L++ NK DL 
Sbjct: 70  SLRPLWRNYFPNTDAVIFVVDSADRDRIEEAKEELHALLNEEELADAPLLILANKQDLP 128

Pfam combines a number of different Prosite families together. Length = 174

>gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal

 Score = 65.4 bits (160), Expect = 1e-13
 Identities = 49/169 (28%), Positives = 75/169 (44%), Gaps = 30/169 (17%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESY-----ISTIGVDFKIRTVEQDGKTIKLQIWDT 64
           +++LIGD GVGKS L++    + + E+        TI  D    T E+    +   I DT
Sbjct: 4   RIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADV---TPER----VPTTIVDT 56

Query: 65  AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKC 123
           + + + R   ++  R A+ I +VY V    +   ++ +WL  I R     V  +LVGNK 
Sbjct: 57  SSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKS 115

Query: 124 DLTANKVVSYETAKAFADEIGIPFM----------ETSAKSATNVEQAF 162
           DL            A  +E  +P M          E SAK+  NV + F
Sbjct: 116 DLRDGSSQ------AGLEEEMLPIMNEFREIETCVECSAKTLINVSEVF 158

Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 168

>gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1)

 Score = 65.9 bits (161), Expect = 3e-13
 Identities = 43/169 (25%), Positives = 76/169 (44%), Gaps = 11/169 (6%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           ++++++G S VGK+ ++ RF    + E Y  TI  DF  +     G+  +L I DT+G  
Sbjct: 1   YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNH 59

Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKL---------LV 119
            F  +           I+V+ + ++ESF  V +   +I    S   NK          + 
Sbjct: 60  PFPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVIC 119

Query: 120 GNKCDLTANKVV-SYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAA 167
           GNK D    + V   E  +    +    + E SAK  +N+++ F A+ +
Sbjct: 120 GNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRALFS 168

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247

>gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases

 Score = 63.5 bits (155), Expect = 7e-13
 Identities = 38/129 (29%), Positives = 65/129 (50%), Gaps = 14/129 (10%)

Query: 1   MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQ-DGKTIKL 59
                +Y  K++++G    GK+ +L +F     + +   TIG +     VE+   K I+ 
Sbjct: 10  FFPRKEY--KVIIVGLDNAGKTTILYQFLLGEVVHTS-PTIGSN-----VEEIVYKNIRF 61

Query: 60  QIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNK--- 116
            +WD  GQE  R+  ++YY     +I+V D TD+E     K+ L ++   A E++ K   
Sbjct: 62  LMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKM--LAHEDLRKAVL 119

Query: 117 LLVGNKCDL 125
           L++ NK DL
Sbjct: 120 LVLANKQDL 128

Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174

>gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)

 Score = 63.1 bits (154), Expect = 1e-12
 Identities = 41/129 (31%), Positives = 60/129 (46%), Gaps = 12/129 (9%)

Query: 40  TIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNV 99
           T+G++  I T+E      +L  WD  GQE  R++   YY  +HG+I V D TD+E FN  
Sbjct: 38  TVGLN--IGTIEVGK--ARLMFWDLGGQEELRSLWDKYYAESHGVIYVIDSTDRERFNES 93

Query: 100 KQWLNEIDRYAS-ENVNKLLVGNKCDLTANKVVSYETAKAFAD---EIG---IPFMETSA 152
           K    ++    + E V  L++ NK DL  + +   E  + F D    IG         SA
Sbjct: 94  KSAFEKVINNEALEGVPLLVLANKQDLP-DALSVAEIKEVFDDCIALIGRRDCLVQPVSA 152

Query: 153 KSATNVEQA 161
                VE+ 
Sbjct: 153 LEGEGVEEG 161

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168

>gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional

 Score = 60.6 bits (147), Expect = 1e-11
 Identities = 37/120 (30%), Positives = 63/120 (52%), Gaps = 12/120 (10%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           ++L++G    GK+ +L +      + + I TIG  F + TVE   K +K  +WD  GQ++
Sbjct: 19  RILMVGLDAAGKTTILYKLKLGEVVTT-IPTIG--FNVETVEY--KNLKFTMWDVGGQDK 73

Query: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASE----NVNKLLVGNKCDL 125
            R +   YY+  +G+I V D  D+E   + ++   E++R  SE    +   L+  NK DL
Sbjct: 74  LRPLWRHYYQNTNGLIFVVDSNDRERIGDARE---ELERMLSEDELRDAVLLVFANKQDL 130

Length = 182

>gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor

 Score = 59.5 bits (144), Expect = 2e-11
 Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 14/121 (11%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTI-GVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           ++L++G    GK+ +L +      L   ++TI  + F + TV    K I   +WD  GQ+
Sbjct: 15  RILMVGLDAAGKTTILYKLK----LGESVTTIPTIGFNVETVTY--KNISFTVWDVGGQD 68

Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASE----NVNKLLVGNKCD 124
           + R +   YY    G+I V D  D++  +  ++   E+ R  +E    +   L+  NK D
Sbjct: 69  KIRPLWRHYYTNTQGLIFVVDSNDRDRIDEARE---ELHRMLNEDELRDAVILVFANKQD 125

Query: 125 L 125
           L
Sbjct: 126 L 126

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175

>gnl|CDD|206689 cd04102, RabL3, Rab GTPase-like family 3 (Rab-like3)

 Score = 59.5 bits (144), Expect = 3e-11
 Identities = 40/147 (27%), Positives = 69/147 (46%), Gaps = 28/147 (19%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIG--VDFKIRTVEQDG---KTIKLQIWDT 64
           K+L++GDSGVGKS L+     +  L +   T+G  VD +  T  +     KT  +++WD 
Sbjct: 2   KVLVLGDSGVGKSSLVHLLCKNQVLGNPSWTVGCSVDVRHHTYGEGTPEEKTFYVELWDV 61

Query: 65  AGQ----ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEI-------------- 106
            G     E  ++  + +Y   +GII V+D+T+++S  N+ +W  E               
Sbjct: 62  GGSVGSAESVKSTRAVFYNQINGIIFVHDLTNKKSSQNLYRWSLEALNRDTFPAGLLVTN 121

Query: 107 -----DRYASENVNKLLVGNKCDLTAN 128
                +++A   V  L++G K D    
Sbjct: 122 GDYDSEQFAGNPVPLLVIGTKLDQIPE 148

RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. Length = 204

>gnl|CDD|206645 cd00879, Sar1, Sar1 is an essential component of COPII vesicle coats

 Score = 58.1 bits (141), Expect = 9e-11
 Identities = 39/144 (27%), Positives = 64/144 (44%), Gaps = 15/144 (10%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQ--DGKTIKLQIWDTAGQ 67
           K++ +G    GK+ LL    DD  L  ++ T+       T E+   G  +K   +D  G 
Sbjct: 21  KIVFLGLDNAGKTTLLHMLKDDR-LAQHVPTLHP-----TSEELTIGN-VKFTTFDLGGH 73

Query: 68  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEI-DRYASENVNKLLVGNKCDLT 126
           E+ R +   Y+    GI+ + D  D E F   K+ L+ + +     NV  L++GNK D  
Sbjct: 74  EQARRVWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLNDEELANVPILILGNKIDKP 133

Query: 127 ANKVVSYETAKAFADEIGIPFMET 150
               VS E  +   + +G+    T
Sbjct: 134 --GAVSEEELR---EALGLYGTTT 152

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. Length = 191

>gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6)

 Score = 57.5 bits (139), Expect = 1e-10
 Identities = 39/120 (32%), Positives = 62/120 (51%), Gaps = 12/120 (10%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTI-GVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           ++L++G    GK+ +L +      L   ++TI  V F + TV    K +K  +WD  GQ+
Sbjct: 11  RILMLGLDAAGKTTILYKLK----LGQSVTTIPTVGFNVETVTY--KNVKFNVWDVGGQD 64

Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEI--DRYASENVNKLLV-GNKCDL 125
           + R +   YY G  G+I V D  D++  +  +Q L+ I  DR   + +  LLV  NK DL
Sbjct: 65  KIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDAL--LLVFANKQDL 122

Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168

>gnl|CDD|206717 cd04150, Arf1_5_like, ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5)

 Score = 56.6 bits (137), Expect = 2e-10
 Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 12/120 (10%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           ++L++G    GK+ +L +      + + I TIG  F + TVE   K I   +WD  GQ++
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQDK 56

Query: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASE----NVNKLLVGNKCDL 125
            R +   Y++   G+I V D  D+E     ++   E+ R  +E    +   L+  NK DL
Sbjct: 57  IRPLWRHYFQNTQGLIFVVDSNDRERIGEARE---ELQRMLNEDELRDAVLLVFANKQDL 113

The Arf1-Arf5-like subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents and other lower eukaryotes, lack Arf2. Human Arf3 shares 96% sequence identity with Arf1 and is believed to generally function interchangeably with Arf1. Human Arf4 in the activated (GTP-bound) state has been shown to interact with the cytoplasmic domain of epidermal growth factor receptor (EGFR) and mediate the EGF-dependent activation of phospholipase D2 (PLD2), leading to activation of the activator protein 1 (AP-1) transcription factor. Arf4 has also been shown to recognize the C-terminal sorting signal of rhodopsin and regulate its incorporation into specialized post-Golgi rhodopsin transport carriers (RTCs). There is some evidence that Arf5 functions at the early-Golgi and the trans-Golgi to affect Golgi-associated alpha-adaptin homology Arf-binding proteins (GGAs). Length = 159

>gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11)

 Score = 56.3 bits (136), Expect = 2e-10
 Identities = 42/164 (25%), Positives = 76/164 (46%), Gaps = 13/164 (7%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           ++LL+G    GKS LL +      + + I T+G  F +  ++ +   + L +WD  GQE+
Sbjct: 1   QVLLLGLDSAGKSTLLYKLKHAELVTT-IPTVG--FNVEMLQLEKH-LSLTVWDVGGQEK 56

Query: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASE---NVNKLLVGNKCD-- 124
            RT+   Y     G++ V D +D+   +  ++ L  I +  +E    V  +L+ NK D  
Sbjct: 57  MRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILK--NEHIKGVPVVLLANKQDLP 114

Query: 125 --LTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMA 166
             LTA ++      K +  +        SA +   + +AF  +A
Sbjct: 115 GALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLA 158

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160

>gnl|CDD|177661 PLN00023, PLN00023, GTP-binding protein; Provisional

 Score = 55.6 bits (134), Expect = 2e-09
 Identities = 38/143 (26%), Positives = 71/143 (49%), Gaps = 25/143 (17%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIG--VDFKIRTVEQDGKT---IK------ 58
           ++L++GDSGVGKS L+      S +     TIG  V  K  T    G +   IK      
Sbjct: 23  RVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERD 82

Query: 59  --LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASEN--- 113
             +++WD +G ER++   S +Y   +G+I V+D++ + +  ++++W +E+    + +   
Sbjct: 83  FFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPL 142

Query: 114 ---------VNKLLVGNKCDLTA 127
                    V  +++GNK D+  
Sbjct: 143 GSGGPGGLPVPYIVIGNKADIAP 165

Length = 334

>gnl|CDD|206721 cd04155, Arl3, Arf-like 3 (Arl3) GTPase

 Score = 53.9 bits (130), Expect = 2e-09
 Identities = 37/119 (31%), Positives = 56/119 (47%), Gaps = 10/119 (8%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIG--VDFKIRTVEQDGKTIKLQIWDTAGQ 67
           ++LL+G    GK+ +L + A +      IS I     F I+ V+ DG   KL +WD  GQ
Sbjct: 17  RILLLGLDNAGKTTILKQLASED-----ISHITPTQGFNIKNVQADG--FKLNVWDIGGQ 69

Query: 68  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEI-DRYASENVNKLLVGNKCDL 125
            + R    +Y+     +I V D  D++ F    Q L E+ +      V  L+  NK DL
Sbjct: 70  RKIRPYWRNYFENTDVLIYVIDSADRKRFEEAGQELVELLEEEKLAGVPVLVFANKQDL 128

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. Length = 174

>gnl|CDD|133275 cd01873, RhoBTB, RhoBTB protein is an atypical member of the Rho family of small GTPases

 Score = 54.2 bits (130), Expect = 3e-09
 Identities = 49/195 (25%), Positives = 80/195 (41%), Gaps = 48/195 (24%)

Query: 8   LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQ--------------- 52
             K +++GD+ VGK+ L+   A +  L  Y         +  ++Q               
Sbjct: 2   TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVV 61

Query: 53  DGKTIKLQIWDTAG-QERFRTITSSYYRGAHG----IIVVYDVTDQESFNNVKQ-WLNEI 106
           DG ++ L++WDT G  ++ R       R A+G    +++ + +    S  NVK  W  EI
Sbjct: 62  DGVSVSLRLWDTFGDHDKDR-------RFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEI 114

Query: 107 DRYASENVNKLLVGNKCDL-------------------TANKVVSYETAKAFADEIGIPF 147
             +    V  +LVG K DL                       ++  ET +A A E+GIP+
Sbjct: 115 RHFC-PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGRAVAKELGIPY 173

Query: 148 METSAKSATNVEQAF 162
            ETS  +   V+  F
Sbjct: 174 YETSVVTQFGVKDVF 188

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. Length = 195

>gnl|CDD|133342 cd04142, RRP22, Ras-related protein on chromosome 22 (RRP22) family

 Score = 54.1 bits (130), Expect = 3e-09
 Identities = 39/139 (28%), Positives = 62/139 (44%), Gaps = 21/139 (15%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWD----- 63
            ++ ++G  GVGK+ ++ +F    + E YI T         V   G+   L I D     
Sbjct: 1   VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQ 60

Query: 64  ----TAGQE----RFRTITSSYYRGAHGIIVVYDVTDQESFNNVK---QWLNEIDRYASE 112
               TAGQE    RFR +     R +   I+VYD+   +SF+ VK   Q + E     ++
Sbjct: 61  RYPGTAGQEWMDPRFRGL-----RNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNK 115

Query: 113 NVNKLLVGNKCDLTANKVV 131
               ++VGNK D   ++  
Sbjct: 116 EPPIVVVGNKRDQQRHRFA 134

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. Length = 198

>gnl|CDD|165788 PLN00223, PLN00223, ADP-ribosylation factor; Provisional

 Score = 53.0 bits (127), Expect = 7e-09
 Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 12/120 (10%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           ++L++G    GK+ +L +      + + I TIG  F + TVE   K I   +WD  GQ++
Sbjct: 19  RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQDK 73

Query: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNK----LLVGNKCDL 125
            R +   Y++   G+I V D  D++     +   +E+ R  +E+  +    L+  NK DL
Sbjct: 74  IRPLWRHYFQNTQGLIFVVDSNDRDRVVEAR---DELHRMLNEDELRDAVLLVFANKQDL 130

Length = 181

>gnl|CDD|206720 cd04154, Arl2, Arf-like 2 (Arl2) GTPase

 Score = 51.9 bits (125), Expect = 1e-08
 Identities = 37/122 (30%), Positives = 63/122 (51%), Gaps = 14/122 (11%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIG--VDFKIRTVEQDGKTIKLQIWDTAG 66
            ++L++G    GK+ +L +F  +      ISTI   + F I+T+E +G   KL IWD  G
Sbjct: 15  MRILMLGLDNAGKTTILKKFNGED-----ISTISPTLGFNIKTLEYNG--YKLNIWDVGG 67

Query: 67  QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEI---DRYASENVNKLLVGNKC 123
           Q+  R+   +Y+     +I V D +D+    + K+ L ++   +R A   +  L+  NK 
Sbjct: 68  QKSLRSYWRNYFESTDALIWVVDSSDRARLEDCKRELQKLLVEERLAGATL--LIFANKQ 125

Query: 124 DL 125
           DL
Sbjct: 126 DL 127

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. Length = 173

>gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1)

 Score = 51.2 bits (122), Expect = 2e-08
 Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 5/80 (6%)

Query: 10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
          +++ +G  G GK+ +L +   D +++  I TIG  F + TVE   K +K  IWD  G+ +
Sbjct: 1  RVVTLGLDGAGKTTILFKLKQDEFMQP-IPTIG--FNVETVEY--KNLKFTIWDVGGKHK 55

Query: 70 FRTITSSYYRGAHGIIVVYD 89
           R +   YY     ++ V D
Sbjct: 56 LRPLWKHYYLNTQAVVFVID 75

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membrane. Two Tyr-based motifs in the Arf domain are responsible for Golgi localization, while the GAP domain controls lysosomal localization. Length = 169

>gnl|CDD|133362 cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp2-like GTPase

 Score = 47.1 bits (112), Expect = 6e-07
 Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 7/118 (5%)

Query: 11  LLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF 70
           +L++G  G GK+ LL   + +  LES + T G +       QD     L+I    G +  
Sbjct: 2   ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSV-AIPTQDAIMELLEI---GGSQNL 57

Query: 71  RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNE-IDRYASENVNKLLVGNKCDLTA 127
           R     Y  G+ G+I V D  D E     +Q L++ +      ++  +++ NK DL A
Sbjct: 58  RKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQ--HPPDLPLVVLANKQDLPA 113

Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. Length = 164

>gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction only]

 Score = 47.1 bits (112), Expect = 7e-07
 Identities = 36/165 (21%), Positives = 70/165 (42%), Gaps = 20/165 (12%)

Query: 10  KLLLIGDSGVGKSCLL------------LRFADDSYLESYISTIGVDFKIRTVEQDGKTI 57
           K+++IG  G GK+  +               +  S      +T+ +DF   ++E D  T 
Sbjct: 12  KIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFG--SIELDEDT- 68

Query: 58  KLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKL 117
            + ++ T GQERF+ +     RGA G IV+ D +   +F+  +  + +    +   +  +
Sbjct: 69  GVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITFHAEE--IIDFLT-SRNPIPVV 125

Query: 118 LVGNKCDLTANKVVSYETAKAFADEI-GIPFMETSAKSATNVEQA 161
           +  NK DL  + +   +  +A   E+  +P +E  A         
Sbjct: 126 VAINKQDL-FDALPPEKIREALKLELLSVPVIEIDATEGEGARDQ 169

Length = 187

>gnl|CDD|206718 cd04151, Arl1, ADP ribosylation factor 1 (Arf1)

 Score = 46.6 bits (111), Expect = 7e-07
 Identities = 32/94 (34%), Positives = 45/94 (47%), Gaps = 5/94 (5%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           ++L++G  G GK+ +L R      + + I TIG  F + TV    K +K Q+WD  GQ  
Sbjct: 1   RILILGLDGAGKTTILYRLQVGEVV-TTIPTIG--FNVETVTY--KNLKFQVWDLGGQTS 55

Query: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWL 103
            R     YY     II V D TD++     K  L
Sbjct: 56  IRPYWRCYYSNTDAIIYVVDSTDRDRLGISKSEL 89

Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. Length = 158

>gnl|CDD|206691 cd04105, SR_beta, Signal recognition particle receptor, beta subunit (SR-beta), together with SR-alpha, forms the heterodimeric signal recognition particle (SRP)

 Score = 44.6 bits (106), Expect = 6e-06
 Identities = 32/124 (25%), Positives = 50/124 (40%), Gaps = 9/124 (7%)

Query: 12  LLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR 71
           LL+G S  GK+ L  +        +  S         +    GK  KL + D  G E+ R
Sbjct: 4   LLLGPSDSGKTALFTKLTTGKVRSTVTSIEPNVASFYSNSSKGK--KLTLVDVPGHEKLR 61

Query: 72  TITSSYYRGAH-GIIVVYD-VTDQESFNNVKQWLNEIDRYASENVNK----LLVGNKCDL 125
                Y + +   I+ V D  T Q++  +V ++L +I     E +      L+  NK DL
Sbjct: 62  DKLLEYLKASLKAIVFVVDSATFQKNIRDVAEFLYDI-LTDLEKIKNKIPILIACNKQDL 120

Query: 126 TANK 129
              K
Sbjct: 121 FTAK 124

Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this type of cancer. Length = 202

>gnl|CDD|206679 cd01892, Miro2, Mitochondrial Rho family 2 (Miro2), C-terminal

 Score = 44.2 bits (105), Expect = 9e-06
 Identities = 38/150 (25%), Positives = 59/150 (39%), Gaps = 23/150 (15%)

Query: 8   LFKLLLIGDSGVGKSCLLLRFADDSY-LESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG 66
           +F   ++G  G GKS LL  F   S+   +Y  TI   + + TVE  G+  K  I    G
Sbjct: 4   VFLCFVLGAKGSGKSALLQAFLGRSFSQNAYSPTIKPRYAVNTVEVPGQE-KYLILREVG 62

Query: 67  QERFRTITSSYYRGAHGIIV-VYDVTDQESFNNVKQWLNEIDRYASENVNK--------- 116
           ++    + +     A  +   VYD +D  SF+           Y +E   K         
Sbjct: 63  EDEEAILLNDAELAACDVACLVYDSSDPNSFS-----------YCAEVYKKYFMLGEIPC 111

Query: 117 LLVGNKCDLTANKVVSYETAKAFADEIGIP 146
           L V  K DL   +  +      F  ++G+P
Sbjct: 112 LFVAAKADLDEQQQRAEVQPDEFCRKLGLP 141

Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 180

>gnl|CDD|133303 cd04103, Centaurin_gamma, Centaurin gamma (CENTG) GTPase

 Score = 41.7 bits (98), Expect = 5e-05
 Identities = 43/164 (26%), Positives = 76/164 (46%), Gaps = 11/164 (6%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           KL ++G+   GKS L+ R+   SY++   S  G  FK + V  DG++  L I D  G   
Sbjct: 2   KLGIVGNLRSGKSALVHRYLTGSYVQLE-SPEGGRFK-KEVLVDGQSHLLLIRDEGGA-- 57

Query: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRY-ASENVNKLLVGNKCDLTAN 128
                + +      +I V+ + D+ SF  V +  +++  Y     +  +LVG +  ++A+
Sbjct: 58  ---PDAQFAGWVDAVIFVFSLEDEASFQTVYRLYHQLSSYRNISEIPLILVGTQDAISAS 114

Query: 129 --KVVSYETAKAFADEIG-IPFMETSAKSATNVEQAFMAMAASI 169
             +V+    A+    ++    + ET A    NVE+ F   A  I
Sbjct: 115 NPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQEAAQKI 158

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. GGAP has been shown to have high GTPase activity due to a direct intramolecular interaction between the N-terminal GTPase domain and the C-terminal ArfGAP domain. In human tissue, AGAP mRNA was detected in skeletal muscle, kidney, placenta, brain, heart, colon, and lung. Reduced expression levels were also observed in the spleen, liver, and small intestine. Length = 158

>gnl|CDD|206722 cd04157, Arl6, Arf-like 6 (Arl6) GTPase

 Score = 41.3 bits (97), Expect = 7e-05
 Identities = 36/163 (22%), Positives = 68/163 (41%), Gaps = 19/163 (11%)

Query: 11  LLLIGDSGVGKSCLLLRFADDSYLESYIS-TIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           +L++G    GK+ ++ +    +     I  T+G  F + + ++    +    +D +GQ +
Sbjct: 2   ILVLGLDNSGKTTIINQLKPSNAQSQNIVPTVG--FNVESFKKGN--LSFTAFDMSGQGK 57

Query: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNNVK----QWLNEIDRYASENVNKLLVGNKCDL 125
           +R +   YY+   GII V D +D+      K      LN  D      +  L   NK DL
Sbjct: 58  YRGLWEHYYKNIQGIIFVIDSSDRLRMVVAKDELELLLNHPD-IKHRRIPILFYANKMDL 116

Query: 126 ----TANKVVSYETAKAFADEIGIPF--METSAKSATNVEQAF 162
               TA K+      +   D+   P+    +SA +   +++  
Sbjct: 117 PDALTAVKITQLLCLENIKDK---PWHIFASSALTGEGLDEGV 156

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 162

>gnl|CDD|223561 COG0486, ThdF, Predicted GTPase [General function prediction only]

 Score = 39.9 bits (94), Expect = 5e-04
 Identities = 37/171 (21%), Positives = 60/171 (35%), Gaps = 41/171 (23%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYIST---------IGVDFKIRTVEQDGKTIKL 59
            K+++IG   VGKS LL         +  I T         I  D  +         I +
Sbjct: 218 LKVVIIGRPNVGKSSLLNALLGR---DRAIVTDIAGTTRDVIEEDINLN-------GIPV 267

Query: 60  QIWDTAGQ-------ERF---RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRY 109
           ++ DTAG        ER    R   +     A  ++ V D +        K+ L  I+  
Sbjct: 268 RLVDTAGIRETDDVVERIGIERAKKAI--EEADLVLFVLDASQPLD----KEDLALIEL- 320

Query: 110 ASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQ 160
             +    ++V NK DL +   +  E         G   +  SAK+   ++ 
Sbjct: 321 LPKKKPIIVVLNKADLVSKIELESEKLAN-----GDAIISISAKTGEGLDA 366

Length = 454

>gnl|CDD|218203 pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserved region

 Score = 39.1 bits (92), Expect = 6e-04
 Identities = 27/111 (24%), Positives = 44/111 (39%), Gaps = 24/111 (21%)

Query: 10  KLLLIGDSGVGKSCLLLR-FA-----DDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWD 63
           K+LL+G  G GKS +    F+     D   L    +TI V+     V   G  + L +WD
Sbjct: 1   KVLLMGLRGSGKSSMRSIIFSNYSPRDTLRLG---ATIDVE--QSHVRFLGN-LTLNLWD 54

Query: 64  TAGQERFRTITSSY-----YRGAHGIIVVYDVTDQESFNNVKQWLNEIDRY 109
             GQ+ F     +      +     +I V+DV  +E       +  ++   
Sbjct: 55  CPGQDDFMENYLTRQKEHIFSNVGVLIYVFDVESRE-------YEEDLATL 98

GTR1 was first identified in S. cerevisiae as a suppressor of a mutation in RCC1. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1. Included in this family is the human Rag C, a novel protein that has been shown to interact with RagA/B. Length = 230

>gnl|CDD|224083 COG1161, COG1161, Predicted GTPases [General function prediction only]

 Score = 38.1 bits (89), Expect = 0.002
 Identities = 29/105 (27%), Positives = 38/105 (36%), Gaps = 13/105 (12%)

Query: 84  IIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEI 143
           ++ V D  D     N      E++R   E   KLLV NK DL A K V+ +  K F  E 
Sbjct: 38  VVEVVDARDPLGTRNP-----ELERIVKEKP-KLLVLNKADL-APKEVTKKWKKYFKKEE 90

Query: 144 GIPFMETSAKSATNVE----QAFMAMAASIKN--RMASQPASNNA 182
           GI  +  SAKS    +             IK   +          
Sbjct: 91  GIKPIFVSAKSRQGGKKIRKALEKLSEEKIKRLKKKGLLKRKIRV 135

Length = 322

>gnl|CDD|133361 cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (Arl2l1) and Arl13

 Score = 37.4 bits (87), Expect = 0.002
 Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 6/116 (5%)

Query: 11  LLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF 70
           LL +G    GK+ L+         +    T+G  F    +  D    ++ I+D  G   F
Sbjct: 2   LLTVGLDNAGKTTLV-SALQGEIPKKVAPTVG--FTPTKLRLD--KYEVCIFDLGGGANF 56

Query: 71  RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLV-GNKCDL 125
           R I  +YY  AHG++ V D +D +    VK+ L E+ ++   +   +LV  NK D 
Sbjct: 57  RGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDK 112

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. Length = 167

>gnl|CDD|206649 cd01850, CDC_Septin, CDC/Septin GTPase family

 Score = 37.1 bits (87), Expect = 0.003
 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 11/68 (16%)

Query: 9  FKLLLIGDSGVGKSCLL--LRFADDSYLESY------ISTIGVDFKIRTVEQ--DGKTIK 58
          F ++++G+SG+GKS  +  L F    Y   Y        T  V+ KI   E   +G  +K
Sbjct: 5  FNIMVVGESGLGKSTFINTL-FGTKLYPSKYPPAPGEHITKTVEIKISKAELEENGVKLK 63

Query: 59 LQIWDTAG 66
          L + DT G
Sbjct: 64 LTVIDTPG 71

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities. Length = 275

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	203
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	100.0
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	100.0
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	100.0
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	100.0
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	100.0
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	100.0
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	100.0
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	100.0
PLN03110	216	Rab GTPase; Provisional	100.0
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	100.0
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	100.0
KOG0394	210	consensus Ras-related GTPase [General function pre	100.0
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	100.0
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	100.0
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	100.0
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	100.0
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	100.0
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	100.0
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	100.0
PTZ00369	189	Ras-like protein; Provisional	100.0
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	100.0
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	100.0
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	100.0
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	100.0
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	100.0
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	100.0
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	100.0
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	100.0
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	100.0
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	100.0
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	100.0
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	100.0
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	100.0
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	100.0
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	100.0
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	100.0
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	100.0
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	100.0
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	100.0
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	100.0
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	100.0
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	100.0
PLN03108	210	Rab family protein; Provisional	100.0
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	100.0
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	100.0
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	100.0
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	100.0
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	100.0
PLN03118	211	Rab family protein; Provisional	100.0
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	100.0
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	100.0
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	100.0
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	100.0
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	100.0
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	100.0
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	100.0
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	100.0
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	100.0
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	100.0
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	100.0
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	100.0
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	100.0
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	100.0
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	100.0
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	100.0
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	100.0
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	100.0
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	100.0
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	100.0
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	100.0
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	100.0
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	100.0
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	100.0
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	100.0
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	100.0
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	100.0
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	100.0
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	100.0
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	100.0
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	100.0
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	100.0
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	100.0
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.98
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.98
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.98
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.98
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.98
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.98
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.98
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.97
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.97
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.97
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.97
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	99.97
PLN00223	181	ADP-ribosylation factor; Provisional	99.97
KOG0395	196	consensus Ras-related GTPase [General function pre	99.97
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.97
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.97
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.97
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.97
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.97
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.97
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.97
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.97
PTZ00133	182	ADP-ribosylation factor; Provisional	99.97
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.97
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.96
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.96
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.96
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.96
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.96
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	99.96
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	99.96
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.96
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.96
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.96
PTZ00099	176	rab6; Provisional	99.95
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.95
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.95
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.95
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.95
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.95
KOG4252	246	consensus GTP-binding protein [Signal transduction	99.95
PRK12299	335	obgE GTPase CgtA; Reviewed	99.95
PLN00023	334	GTP-binding protein; Provisional	99.95
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.94
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.94
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.94
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.94
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.94
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.94
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.94
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	99.93
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.93
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.93
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.92
COG1100	219	GTPase SAR1 and related small G proteins [General	99.92
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.92
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.92
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.92
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.92
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	99.92
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.92
PRK04213	201	GTP-binding protein; Provisional	99.91
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	99.91
PRK12296	500	obgE GTPase CgtA; Reviewed	99.91
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.91
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.91
PRK03003	472	GTP-binding protein Der; Reviewed	99.91
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.91
PRK12297	424	obgE GTPase CgtA; Reviewed	99.91
PRK03003	472	GTP-binding protein Der; Reviewed	99.91
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.9
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.9
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.9
PRK15494	339	era GTPase Era; Provisional	99.9
cd00881	189	GTP_translation_factor GTP translation factor fami	99.9
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.9
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.89
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.89
KOG3883	198	consensus Ras family small GTPase [Signal transduc	99.89
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.89
PRK11058	426	GTPase HflX; Provisional	99.89
KOG1673	205	consensus Ras GTPases [General function prediction	99.89
PRK12298	390	obgE GTPase CgtA; Reviewed	99.89
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.89
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.89
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.89
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.88
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.88
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.87
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.87
KOG4423	229	consensus GTP-binding protein-like, RAS superfamil	99.87
PRK00093	435	GTP-binding protein Der; Reviewed	99.87
PRK00089	292	era GTPase Era; Reviewed	99.87
COG1160	444	Predicted GTPases [General function prediction onl	99.87
PRK05306	787	infB translation initiation factor IF-2; Validated	99.87
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.87
CHL00189	742	infB translation initiation factor 2; Provisional	99.87
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.87
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.87
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.87
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.87
PRK00093	435	GTP-binding protein Der; Reviewed	99.87
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	99.86
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.86
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.86
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.86
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	99.86
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.85
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	99.85
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.85
COG1159	298	Era GTPase [General function prediction only]	99.85
PRK05433	600	GTP-binding protein LepA; Provisional	99.84
COG1160	444	Predicted GTPases [General function prediction onl	99.84
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.84
COG2229	187	Predicted GTPase [General function prediction only	99.84
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.83
COG0486	454	ThdF Predicted GTPase [General function prediction	99.83
KOG0096	216	consensus GTPase Ran/TC4/GSP1 (nuclear protein tra	99.82
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.82
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.81
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.81
PRK12317	425	elongation factor 1-alpha; Reviewed	99.81
PRK04004	586	translation initiation factor IF-2; Validated	99.8
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.8
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.8
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.8
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	99.8
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.8
PRK10218	607	GTP-binding protein; Provisional	99.8
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.8
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.8
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.79
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.79
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	99.79
COG1084	346	Predicted GTPase [General function prediction only	99.78
COG0218	200	Predicted GTPase [General function prediction only	99.78
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.77
COG0536	369	Obg Predicted GTPase [General function prediction	99.77
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.76
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.76
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.75
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.75
PRK12736	394	elongation factor Tu; Reviewed	99.75
COG2262	411	HflX GTPases [General function prediction only]	99.75
KOG0077	193	consensus Vesicle coat complex COPII, GTPase subun	99.75
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.75
PRK12735	396	elongation factor Tu; Reviewed	99.74
COG1163	365	DRG Predicted GTPase [General function prediction	99.74
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.73
CHL00071	409	tufA elongation factor Tu	99.73
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.73
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.72
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.72
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.72
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.71
PRK00049	396	elongation factor Tu; Reviewed	99.7
COG3596	296	Predicted GTPase [General function prediction only	99.7
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.7
PLN03126	478	Elongation factor Tu; Provisional	99.69
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.69
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.69
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.69
PLN03127	447	Elongation factor Tu; Provisional	99.69
PLN00043	447	elongation factor 1-alpha; Provisional	99.68
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.68
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.68
PTZ00141	446	elongation factor 1- alpha; Provisional	99.68
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.66
PRK13351	687	elongation factor G; Reviewed	99.66
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.66
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.65
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.65
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.64
PRK12739	691	elongation factor G; Reviewed	99.63
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.63
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.63
KOG1145	683	consensus Mitochondrial translation initiation fac	99.63
KOG0090	238	consensus Signal recognition particle receptor, be	99.62
KOG0462	650	consensus Elongation factor-type GTP-binding prote	99.61
PRK09602	396	translation-associated GTPase; Reviewed	99.6
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.59
PRK09866	741	hypothetical protein; Provisional	99.59
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	99.58
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	99.56
PRK12740	668	elongation factor G; Reviewed	99.54
PRK00007	693	elongation factor G; Reviewed	99.54
PTZ00258	390	GTP-binding protein; Provisional	99.52
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.52
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.51
PRK14845	1049	translation initiation factor IF-2; Provisional	99.51
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	99.51
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.49
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	99.49
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	99.48
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.48
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	99.47
TIGR00101	199	ureG urease accessory protein UreG. This model rep	99.47
PRK13768	253	GTPase; Provisional	99.46
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	99.45
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.43
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	99.43
PRK09601	364	GTP-binding protein YchF; Reviewed	99.42
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.42
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.41
KOG3905	473	consensus Dynein light intermediate chain [Cell mo	99.4
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	99.4
PRK07560	731	elongation factor EF-2; Reviewed	99.39
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	99.39
PTZ00416	836	elongation factor 2; Provisional	99.39
PLN00116	843	translation elongation factor EF-2 subunit; Provis	99.39
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	99.39
PRK09435	332	membrane ATPase/protein kinase; Provisional	99.38
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	99.38
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	99.38
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	99.36
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	99.33
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	99.33
KOG0461	522	consensus Selenocysteine-specific elongation facto	99.33
KOG0082	354	consensus G-protein alpha subunit (small G protein	99.32
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	99.32
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	99.3
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	99.3
KOG3886	295	consensus GTP-binding protein [Signal transduction	99.3
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	99.28
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	99.27
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	99.27
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	99.25
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	99.22
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	99.2
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	99.19
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	99.19
KOG0410	410	consensus Predicted GTP binding protein [General f	99.16
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	99.16
COG3276	447	SelB Selenocysteine-specific translation elongatio	99.16
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	99.15
COG0012	372	Predicted GTPase, probable translation factor [Tra	99.14
KOG1954	532	consensus Endocytosis/signaling protein EHD1 [Sign	99.12
COG5019	373	CDC3 Septin family protein [Cell division and chro	99.12
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	99.09
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	99.09
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	99.09
KOG0468	971	consensus U5 snRNP-specific protein [Translation,	99.08
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	99.06
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	99.03
COG0050	394	TufB GTPases - translation elongation factors [Tra	99.02
PRK12289	352	GTPase RsgA; Reviewed	98.95
KOG0448	749	consensus Mitofusin 1 GTPase, involved in mitochon	98.94
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	98.93
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.92
KOG3887	347	consensus Predicted small GTPase involved in nucle	98.91
PRK00098	298	GTPase RsgA; Reviewed	98.89
PRK12288	347	GTPase RsgA; Reviewed	98.87
KOG2486	320	consensus Predicted GTPase [General function predi	98.87
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.84
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.83
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.83
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.82
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.81
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	98.81
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.78
KOG1487	358	consensus GTP-binding protein DRG1 (ODN superfamil	98.78
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	98.78
KOG1491	391	consensus Predicted GTP-binding protein (ODN super	98.74
KOG0085	359	consensus G protein subunit Galphaq/Galphay, small	98.72
COG5258	527	GTPBP1 GTPase [General function prediction only]	98.72
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.7
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	98.66
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.65
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.65
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.65
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.64
KOG0464	753	consensus Elongation factor G [Translation, riboso	98.63
PF09547	492	Spore_IV_A: Stage IV sporulation protein A (spore_	98.63
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.63
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	98.62
KOG1143	591	consensus Predicted translation elongation factor	98.61
COG1161	322	Predicted GTPases [General function prediction onl	98.6
PRK10416	318	signal recognition particle-docking protein FtsY;	98.57
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.56
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	98.54
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	98.54
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.53
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	98.53
PRK12288	347	GTPase RsgA; Reviewed	98.51
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.5
TIGR00064	272	ftsY signal recognition particle-docking protein F	98.49
KOG0460	449	consensus Mitochondrial translation elongation fac	98.47
KOG0465	721	consensus Mitochondrial elongation factor [Transla	98.46
cd03112	158	CobW_like The function of this protein family is u	98.46
COG1162	301	Predicted GTPases [General function prediction onl	98.44
PRK13796	365	GTPase YqeH; Provisional	98.43
KOG0467	887	consensus Translation elongation factor 2/ribosome	98.42
KOG4273	418	consensus Uncharacterized conserved protein [Funct	98.41
PRK14974	336	cell division protein FtsY; Provisional	98.41
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.4
PRK01889	356	GTPase RsgA; Reviewed	98.38
PRK12289	352	GTPase RsgA; Reviewed	98.36
KOG0447	980	consensus Dynamin-like GTP binding protein [Genera	98.36
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	98.33
KOG0466	466	consensus Translation initiation factor 2, gamma s	98.3
PRK13796	365	GTPase YqeH; Provisional	98.27
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.27
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	98.27
KOG3859	406	consensus Septins (P-loop GTPases) [Cell cycle con	98.25
PRK13695	174	putative NTPase; Provisional	98.23
KOG0459	501	consensus Polypeptide release factor 3 [Translatio	98.2
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	98.15
PRK11537	318	putative GTP-binding protein YjiA; Provisional	98.15
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	98.14
COG1162	301	Predicted GTPases [General function prediction onl	98.13
PRK00098	298	GTPase RsgA; Reviewed	98.13
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	98.13
COG3523	1188	IcmF Type VI protein secretion system component Va	98.13
COG0523	323	Putative GTPases (G3E family) [General function pr	98.13
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.12
cd03115	173	SRP The signal recognition particle (SRP) mediates	98.1
KOG0463	641	consensus GTP-binding protein GP-1 [General functi	98.09
PF02492	178	cobW: CobW/HypB/UreG, nucleotide-binding domain; I	98.06
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	98.01
cd03114	148	ArgK-like The function of this protein family is u	98.0
KOG1534	273	consensus Putative transcription factor FET5 [Tran	97.92
PF11111	176	CENP-M: Centromere protein M (CENP-M); InterPro: I	97.89
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	97.88
KOG2484	435	consensus GTPase [General function prediction only	97.88
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	97.88
PRK00771	437	signal recognition particle protein Srp54; Provisi	97.83
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	97.83
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	97.83
KOG0099	379	consensus G protein subunit Galphas, small G prote	97.82
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	97.78
PRK10867	433	signal recognition particle protein; Provisional	97.73
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	97.72
TIGR00959	428	ffh signal recognition particle protein. This mode	97.72
KOG2485	335	consensus Conserved ATP/GTP binding protein [Gener	97.71
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	97.68
cd03111	106	CpaE_like This protein family consists of proteins	97.68
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	97.67
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	97.66
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	97.66
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.64
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	97.63
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	97.6
TIGR02475	341	CobW cobalamin biosynthesis protein CobW. A broade	97.59
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	97.59
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.58
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	97.57
PRK08118	167	topology modulation protein; Reviewed	97.56
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	97.54
PRK07261	171	topology modulation protein; Provisional	97.53
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	97.51
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	97.49
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	97.49
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.47
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	97.46
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	97.45
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	97.4
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	97.37
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.37
KOG2423	572	consensus Nucleolar GTPase [General function predi	97.36
PRK14737	186	gmk guanylate kinase; Provisional	97.34
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	97.34
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	97.33
cd02036	179	MinD Bacterial cell division requires the formatio	97.32
KOG1533	290	consensus Predicted GTPase [General function predi	97.29
PF00005	137	ABC_tran: ABC transporter This structure is on hol	97.29
cd03110	179	Fer4_NifH_child This protein family's function is	97.27
PRK06217	183	hypothetical protein; Validated	97.25
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	97.25
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	97.23
PRK03839	180	putative kinase; Provisional	97.23
KOG0469	842	consensus Elongation factor 2 [Translation, riboso	97.23
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	97.22
PF00004	132	AAA: ATPase family associated with various cellula	97.2
PF02367	123	UPF0079: Uncharacterised P-loop hydrolase UPF0079;	97.2
PRK14738	206	gmk guanylate kinase; Provisional	97.2
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	97.19
smart00382	148	AAA ATPases associated with a variety of cellular	97.19
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	97.18
PRK10646	153	ADP-binding protein; Provisional	97.17
PRK14530	215	adenylate kinase; Provisional	97.16
COG1161	322	Predicted GTPases [General function prediction onl	97.14
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	97.13
PRK04195	482	replication factor C large subunit; Provisional	97.12
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	97.12
COG0802	149	Predicted ATPase or kinase [General function predi	97.11
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	97.11
PRK01889	356	GTPase RsgA; Reviewed	97.11
PRK14531	183	adenylate kinase; Provisional	97.1
KOG3347	176	consensus Predicted nucleotide kinase/nuclear prot	97.1
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	97.09
PRK14532	188	adenylate kinase; Provisional	97.09
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	97.08
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	97.08
KOG0446	657	consensus Vacuolar sorting protein VPS1, dynamin,	97.07
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	97.07
PRK13949	169	shikimate kinase; Provisional	97.06
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	97.06
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	97.05
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	97.05
PRK00625	173	shikimate kinase; Provisional	97.05
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	97.05
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	97.04
TIGR00235	207	udk uridine kinase. Model contains a number of lon	97.03
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	97.03
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	97.02
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	97.02
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	97.01
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	97.0
KOG3929	363	consensus Uncharacterized conserved protein [Funct	96.99
PRK02496	184	adk adenylate kinase; Provisional	96.98
KOG0780	483	consensus Signal recognition particle, subunit Srp	96.97
KOG1970	634	consensus Checkpoint RAD17-RFC complex, RAD17/RAD2	96.97
PTZ00088	229	adenylate kinase 1; Provisional	96.96
COG0552	340	FtsY Signal recognition particle GTPase [Intracell	96.95
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	96.94
PRK08233	182	hypothetical protein; Provisional	96.94

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.2e-44  Score=248.40  Aligned_cols=202  Identities=72%  Similarity=1.164  Sum_probs=184.4

Q ss_pred             CCCCCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccC
Q 028792            1 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRG   80 (203)
Q Consensus         1 ~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~   80 (203)
                      |+...+|.|||+++|..|+|||.|+.++..+.+...+.+|++.++..+.+.++++.++++||||+|+++++.....++++
T Consensus         2 ~~~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~   81 (205)
T KOG0084|consen    2 MNPEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRG   81 (205)
T ss_pred             CCcccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccC
Confidence            46678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCC-EEEEecCCCCCHH
Q 028792           81 AHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIP-FMETSAKSATNVE  159 (203)
Q Consensus        81 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~  159 (203)
                      ++++|+|||+++.+||..+..|+.++.++...+.|.++|+||+|+.+.+.++.++++.|+..++++ ++++||+++.+++
T Consensus        82 ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe  161 (205)
T KOG0084|consen   82 AHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVE  161 (205)
T ss_pred             CCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHH
Confidence            999999999999999999999999999999988999999999999999999999999999999998 9999999999999


Q ss_pred             HHHHHHHHHHHHHhccCCCCCCCCCCccccCCCCCCC-CCCCCC
Q 028792          160 QAFMAMAASIKNRMASQPASNNARPPTVQIRGQPVNQ-KSGCCS  202 (203)
Q Consensus       160 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  202 (203)
                      ++|..|...+.++.......+.......+..++|.++ .++||+
T Consensus       162 ~~F~~la~~lk~~~~~~~~~~~~~~~~~ql~~~p~~~~~~~~C~  205 (205)
T KOG0084|consen  162 DAFLTLAKELKQRKGLHVKWSTASLESVQLKGTPVKKSNGGCCE  205 (205)
T ss_pred             HHHHHHHHHHHHhcccCCCCCcCCCCceeeCCCCcccccCCCCC
Confidence            9999999999988887776654444444444455544 455775

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.3e-41  Score=231.74  Aligned_cols=197  Identities=45%  Similarity=0.747  Sum_probs=174.3

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      .+.+||+++|..++|||||+.++..+.+.+...+|++..+....+..++..++|.||||+|+++|.++...++++++++|
T Consensus         3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi   82 (200)
T KOG0092|consen    3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI   82 (200)
T ss_pred             cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence            46799999999999999999999999999998999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHH
Q 028792           86 VVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAM  165 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  165 (203)
                      +|||+++.+||..++.|+..+.....++.-+.+++||+|+.+.+.+..+++..++...+..++++||++|.|++++|..|
T Consensus        83 vvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~I  162 (200)
T KOG0092|consen   83 VVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAI  162 (200)
T ss_pred             EEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHH
Confidence            99999999999999999999998888778888899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhccCCCCCCCCCCccc-cCCCCCCCCCCCCC
Q 028792          166 AASIKNRMASQPASNNARPPTVQ-IRGQPVNQKSGCCS  202 (203)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  202 (203)
                      .+.+.....+......+++...- ...++....++|||
T Consensus       163 a~~lp~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~C~  200 (200)
T KOG0092|consen  163 AEKLPCSDPQERQGLPNRRQGVDLNSNQEPARPSGCCA  200 (200)
T ss_pred             HHhccCccccccccccccccceecccCCCCcCcCCcCC
Confidence            99998766655543222111111 11125667889997

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.8e-39  Score=226.77  Aligned_cols=174  Identities=62%  Similarity=1.067  Sum_probs=167.8

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcE
Q 028792            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG   83 (203)
Q Consensus         4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   83 (203)
                      +.++.++|+++|.++||||+++.++..+.+...+..|++.++....+..++..+.+++|||.|++++......+++.+++
T Consensus         8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g   87 (207)
T KOG0078|consen    8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG   87 (207)
T ss_pred             CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence            78899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHH
Q 028792           84 IIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFM  163 (203)
Q Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  163 (203)
                      +++|||+++..+|+.+..|+..+..+...+.|.++|+||+|+...+.++.+..+.++..+++.++++||++|.||+++|.
T Consensus        88 i~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~  167 (207)
T KOG0078|consen   88 ILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAFL  167 (207)
T ss_pred             eEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHHHH
Confidence            99999999999999999999999999998999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhccCC
Q 028792          164 AMAASIKNRMASQP  177 (203)
Q Consensus       164 ~l~~~~~~~~~~~~  177 (203)
                      .|.+.++++.....
T Consensus       168 ~La~~i~~k~~~~~  181 (207)
T KOG0078|consen  168 SLARDILQKLEDAE  181 (207)
T ss_pred             HHHHHHHhhcchhh
Confidence            99999997655543

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.8e-39  Score=224.68  Aligned_cols=169  Identities=41%  Similarity=0.704  Sum_probs=159.5

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      -+.+|++++|..++||||||.++..+.+...|.+|++.++....+.+.+.++++++|||.|+++++.+...+++++.++|
T Consensus        20 ~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vav   99 (221)
T KOG0094|consen   20 LKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   99 (221)
T ss_pred             ceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEE
Confidence            45699999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcCC-CCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHH
Q 028792           86 VVYDVTDQESFNNVKQWLNEIDRYASE-NVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMA  164 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~l~~~~~~-~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  164 (203)
                      +|||+++..+|+....|++.++..... +.-+++|+||.||.+.+++..++....++++++.|+++||+.|+||..+|..
T Consensus       100 iVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFrr  179 (221)
T KOG0094|consen  100 IVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFRR  179 (221)
T ss_pred             EEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHHH
Confidence            999999999999999999999888775 4778889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhc
Q 028792          165 MAASIKNRMA  174 (203)
Q Consensus       165 l~~~~~~~~~  174 (203)
                      +...+.+...
T Consensus       180 Iaa~l~~~~~  189 (221)
T KOG0094|consen  180 IAAALPGMEV  189 (221)
T ss_pred             HHHhccCccc
Confidence            8877766544

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=1.4e-38  Score=213.54  Aligned_cols=199  Identities=45%  Similarity=0.761  Sum_probs=174.4

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcE
Q 028792            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG   83 (203)
Q Consensus         4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   83 (203)
                      ..++.+||+++|..|+|||||+.++..+.+.+....|++.++....+.+++..+++.||||+|+++++.+...+++.+.+
T Consensus         7 ~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqG   86 (209)
T KOG0080|consen    7 GYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQG   86 (209)
T ss_pred             CcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCce
Confidence            35778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHH
Q 028792           84 IIVVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAF  162 (203)
Q Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~  162 (203)
                      +|+|||++.+++|..+..|+.++..+.. ++.-.++|+||+|....+.++.++...|++++++.++++||++.+|+...|
T Consensus        87 iIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~F  166 (209)
T KOG0080|consen   87 IILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQCCF  166 (209)
T ss_pred             eEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHHH
Confidence            9999999999999999999999988865 456668899999998889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhccCCCCCCCCCCccccCCCCC--CCCCCCCC
Q 028792          163 MAMAASIKNRMASQPASNNARPPTVQIRGQPV--NQKSGCCS  202 (203)
Q Consensus       163 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  202 (203)
                      +.|+..+.+-..--...+......+..++..+  -.+++||.
T Consensus       167 eelveKIi~tp~l~~~~n~~~~~~i~~~p~~~~~~~~g~~Cs  208 (209)
T KOG0080|consen  167 EELVEKIIETPSLWEEGNSSAGLDIASDPDGEASAHQGGCCS  208 (209)
T ss_pred             HHHHHHHhcCcchhhccCCccccccccCCCcccccccCCccC
Confidence            99999998755544444444444444444433  33466774

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=100.00  E-value=1.9e-37  Score=226.67  Aligned_cols=171  Identities=39%  Similarity=0.689  Sum_probs=151.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEEC-CeEEEEEEEeCCChhhhchhhhccccCCcEEEEE
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQD-GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVV   87 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (203)
                      +||+++|++|||||||+++|.++.+...+.+|.+.++....+..+ +..+.+.+||+||++++..++..++.++|++|+|
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv   80 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV   80 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence            589999999999999999999999888888888888877777777 7789999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhc----CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC-CCEEEEecCCCCCHHHHH
Q 028792           88 YDVTDQESFNNVKQWLNEIDRYA----SENVNKLLVGNKCDLTANKVVSYETAKAFADEIG-IPFMETSAKSATNVEQAF  162 (203)
Q Consensus        88 ~d~~~~~s~~~~~~~~~~l~~~~----~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~~~  162 (203)
                      ||++++++|+.+..|+..+....    ..+.|+++|+||.|+.+......+++.+++...+ ..++++||++|.|++++|
T Consensus        81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f  160 (201)
T cd04107          81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAM  160 (201)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHH
Confidence            99999999999999998876532    2468999999999997666778888999999998 689999999999999999


Q ss_pred             HHHHHHHHHHhccCCCC
Q 028792          163 MAMAASIKNRMASQPAS  179 (203)
Q Consensus       163 ~~l~~~~~~~~~~~~~~  179 (203)
                      .+|.+.+.+.....+.+
T Consensus       161 ~~l~~~l~~~~~~~~~~  177 (201)
T cd04107         161 RFLVKNILANDKNLQQA  177 (201)
T ss_pred             HHHHHHHHHhchhhHhh
Confidence            99999998776554433

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04121 Rab40 Rab40 subfamily

Probab=100.00  E-value=4.7e-37  Score=221.58  Aligned_cols=171  Identities=43%  Similarity=0.740  Sum_probs=156.0

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcE
Q 028792            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG   83 (203)
Q Consensus         4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   83 (203)
                      ..++.+||+++|..|+|||||+++|..+.+...+.++.+.++....+..++..+.+.+||++|++++..++..++.++|+
T Consensus         2 ~~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~   81 (189)
T cd04121           2 AYDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQG   81 (189)
T ss_pred             CCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCE
Confidence            35688999999999999999999999988887777888888877888888888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHH
Q 028792           84 IIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFM  163 (203)
Q Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  163 (203)
                      +++|||++++++|+.+..|++.+.... .+.|++||+||.|+...+.+..+++..+++.+++++++|||++|.|++++|+
T Consensus        82 illVfD~t~~~Sf~~~~~w~~~i~~~~-~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~  160 (189)
T cd04121          82 IILVYDITNRWSFDGIDRWIKEIDEHA-PGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFT  160 (189)
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHH
Confidence            999999999999999999999997665 4799999999999987778888999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcc
Q 028792          164 AMAASIKNRMAS  175 (203)
Q Consensus       164 ~l~~~~~~~~~~  175 (203)
                      +|.+.+..+..+
T Consensus       161 ~l~~~i~~~~~~  172 (189)
T cd04121         161 ELARIVLMRHGR  172 (189)
T ss_pred             HHHHHHHHhcCC
Confidence            999988765553

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>cd04120 Rab12 Rab12 subfamily

Probab=100.00  E-value=6.2e-37  Score=222.92  Aligned_cols=164  Identities=49%  Similarity=0.894  Sum_probs=151.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEE
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVY   88 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (203)
                      ++|+++|..|||||||++++..+.+...+.+|.+.++....+.+++..+.+.+||++|++++..++..+++++|++|+||
T Consensus         1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf   80 (202)
T cd04120           1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY   80 (202)
T ss_pred             CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence            47999999999999999999999998888889888888888889998899999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHc-CCCEEEEecCCCCCHHHHHHHHHH
Q 028792           89 DVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEI-GIPFMETSAKSATNVEQAFMAMAA  167 (203)
Q Consensus        89 d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~~~~~l~~  167 (203)
                      |++++++|+.+..|+..+......+.|+++|+||+|+...+.+..++..++++.+ ++.+++|||++|.|++++|.+|.+
T Consensus        81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~  160 (202)
T cd04120          81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD  160 (202)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHH
Confidence            9999999999999999887766567999999999999877888888888888875 789999999999999999999999


Q ss_pred             HHHHH
Q 028792          168 SIKNR  172 (203)
Q Consensus       168 ~~~~~  172 (203)
                      .+.+.
T Consensus       161 ~~~~~  165 (202)
T cd04120         161 DILKK  165 (202)
T ss_pred             HHHHh
Confidence            88765

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>PLN03110 Rab GTPase; Provisional

Probab=100.00  E-value=9.5e-37  Score=224.97  Aligned_cols=172  Identities=51%  Similarity=0.849  Sum_probs=156.3

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcE
Q 028792            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG   83 (203)
Q Consensus         4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   83 (203)
                      +.++.+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|+.++..++..++..+++
T Consensus         8 ~~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~   87 (216)
T PLN03110          8 EYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVG   87 (216)
T ss_pred             ccCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCE
Confidence            45688999999999999999999999998887788888888888888888888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHH
Q 028792           84 IIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFM  163 (203)
Q Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  163 (203)
                      +++|||++++++++.+..|+..+......+.|+++|+||.|+...+.+..++...++...+++++++||++|.|++++|+
T Consensus        88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~  167 (216)
T PLN03110         88 ALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQ  167 (216)
T ss_pred             EEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            99999999999999999999998877666799999999999987777788888888888899999999999999999999


Q ss_pred             HHHHHHHHHhcc
Q 028792          164 AMAASIKNRMAS  175 (203)
Q Consensus       164 ~l~~~~~~~~~~  175 (203)
                      +|.+.+.+....
T Consensus       168 ~l~~~i~~~~~~  179 (216)
T PLN03110        168 TILLEIYHIISK  179 (216)
T ss_pred             HHHHHHHHHhhc
Confidence            999988775443

>cd04110 Rab35 Rab35 subfamily

Probab=100.00  E-value=1.1e-36  Score=222.22  Aligned_cols=196  Identities=56%  Similarity=0.887  Sum_probs=165.0

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEE
Q 028792            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI   84 (203)
Q Consensus         5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (203)
                      .++.++|+++|++|+|||||+++|.+..+...+.+|.+.++....+..++..+.+.+||+||++.+..++..++.++|++
T Consensus         3 ~~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~i   82 (199)
T cd04110           3 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGV   82 (199)
T ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEE
Confidence            35689999999999999999999999988888888888788777888888888999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHH
Q 028792           85 IVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMA  164 (203)
Q Consensus        85 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  164 (203)
                      ++|||+++++++..+..|+..+..... ..|+++|+||+|+.+...+..++...++...+++++++||++|.|++++|.+
T Consensus        83 ilv~D~~~~~s~~~~~~~~~~i~~~~~-~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~  161 (199)
T cd04110          83 IVVYDVTNGESFVNVKRWLQEIEQNCD-DVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNC  161 (199)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHH
Confidence            999999999999999999998876554 6899999999999876677778888888888999999999999999999999


Q ss_pred             HHHHHHHHhccCCCCCCCCCCccccCC-CCCCCCCCCC
Q 028792          165 MAASIKNRMASQPASNNARPPTVQIRG-QPVNQKSGCC  201 (203)
Q Consensus       165 l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  201 (203)
                      |...+.......-.............. +..++++.||
T Consensus       162 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (199)
T cd04110         162 ITELVLRAKKDNLAKQQQQQQNDVVKLPKNSKRKKRCC  199 (199)
T ss_pred             HHHHHHHhhhccCcccccCCccccCccchhccccccCC
Confidence            999998765555443333333333333 3336677777

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd04126 Rab20 Rab20 subfamily

Probab=100.00  E-value=4.3e-37  Score=226.12  Aligned_cols=187  Identities=34%  Similarity=0.547  Sum_probs=155.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEE
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVY   88 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (203)
                      +||+++|.+|+|||||+++|..+.+.. +.++.+..+.....    ..+.+.+||++|++.+..++..++..+|++|+||
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~   75 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY   75 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence            589999999999999999999988864 45666655443332    3478999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC-------------------CcccCHHHHHHHHHHcC-----
Q 028792           89 DVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTA-------------------NKVVSYETAKAFADEIG-----  144 (203)
Q Consensus        89 d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~-------------------~~~~~~~~~~~~~~~~~-----  144 (203)
                      |++++++|..+..|+..+......+.|+++|+||+|+.+                   .+.+..+++..+++..+     
T Consensus        76 Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~  155 (220)
T cd04126          76 DVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKML  155 (220)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccc
Confidence            999999999999988777665555789999999999975                   46778889999998876     


Q ss_pred             ---------CCEEEEecCCCCCHHHHHHHHHHHHHHHhccCCCCCCCCCCccccCCCCCCCCCCCC
Q 028792          145 ---------IPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPVNQKSGCC  201 (203)
Q Consensus       145 ---------~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (203)
                               ++|++|||++|.||+++|..+.+.+.....++... .++..-....+.|+++|++||
T Consensus       156 ~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  220 (220)
T cd04126         156 DEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQRAE-ANRTQGTVNLPNPKRSKSKCC  220 (220)
T ss_pred             cccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhhhh-hhhhhccccCCCcccCCCCCC
Confidence                     68999999999999999999999988766665543 233345556777899999999

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=100.00  E-value=2.5e-37  Score=212.04  Aligned_cols=175  Identities=39%  Similarity=0.705  Sum_probs=160.7

Q ss_pred             CCC-CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhcccc
Q 028792            1 MNN-EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYR   79 (203)
Q Consensus         1 ~~~-~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~   79 (203)
                      |.. .....+||+++|.+|+|||||++++.+.++...+..|++.++..+.+.+++..+.++||||+|++++.++...|++
T Consensus         1 M~~~~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYR   80 (210)
T KOG0394|consen    1 MSSLRKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYR   80 (210)
T ss_pred             CCCcCcccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceec
Confidence            455 4467799999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC----CCCcEEEEEeCCCCCCC--cccCHHHHHHHHHHcC-CCEEEEec
Q 028792           80 GAHGIIVVYDVTDQESFNNVKQWLNEIDRYAS----ENVNKLLVGNKCDLTAN--KVVSYETAKAFADEIG-IPFMETSA  152 (203)
Q Consensus        80 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~----~~~p~iiv~nK~D~~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa  152 (203)
                      ++|.+++|||++++.+|+.+..|..++.....    ..-|+||++||+|+...  +.++...+++|+...+ ++||++||
T Consensus        81 gaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSA  160 (210)
T KOG0394|consen   81 GADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSA  160 (210)
T ss_pred             CCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecc
Confidence            99999999999999999999999999876654    45799999999998763  7889999999999886 89999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHhcc
Q 028792          153 KSATNVEQAFMAMAASIKNRMAS  175 (203)
Q Consensus       153 ~~~~gi~~~~~~l~~~~~~~~~~  175 (203)
                      +++.++.++|..+.+.+++....
T Consensus       161 K~~~NV~~AFe~ia~~aL~~E~~  183 (210)
T KOG0394|consen  161 KEATNVDEAFEEIARRALANEDR  183 (210)
T ss_pred             cccccHHHHHHHHHHHHHhccch
Confidence            99999999999999998876654

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.8e-37  Score=210.28  Aligned_cols=171  Identities=55%  Similarity=0.902  Sum_probs=163.4

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEE
Q 028792            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI   84 (203)
Q Consensus         5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (203)
                      +.+.+|++++|+.|+|||+|+.++....+.+.+..|++.++....+.++++.+++++||+.|++.+.+....+++.+.++
T Consensus         3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Ga   82 (216)
T KOG0098|consen    3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGA   82 (216)
T ss_pred             ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcce
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHH
Q 028792           85 IVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMA  164 (203)
Q Consensus        85 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  164 (203)
                      ++|||++.+++|..+..|+..++....++..+++++||+|+...+.++.++.++|+++++..++++||++++|++|+|..
T Consensus        83 lLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~n  162 (216)
T KOG0098|consen   83 LLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFIN  162 (216)
T ss_pred             EEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHHH
Confidence            99999999999999999999999998788999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcc
Q 028792          165 MAASIKNRMAS  175 (203)
Q Consensus       165 l~~~~~~~~~~  175 (203)
                      ....+......
T Consensus       163 ta~~Iy~~~q~  173 (216)
T KOG0098|consen  163 TAKEIYRKIQD  173 (216)
T ss_pred             HHHHHHHHHHh
Confidence            98888875444

>cd04112 Rab26 Rab26 subfamily

Probab=100.00  E-value=3.2e-36  Score=218.51  Aligned_cols=190  Identities=48%  Similarity=0.898  Sum_probs=160.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCC-CCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEE
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDSYLE-SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVV   87 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (203)
                      +||+++|++|||||||+++|..+.+.. .+.++.+.++....+.+++..+.+.+||+||+.++...+..++..+|++|+|
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   80 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL   80 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence            589999999999999999999888754 5667777677766777888889999999999999988888999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHH
Q 028792           88 YDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAA  167 (203)
Q Consensus        88 ~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  167 (203)
                      +|++++++++.+..|+..+......+.|+++++||.|+...+.+..++...++..++++++++||++|+|++++|.+|.+
T Consensus        81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~  160 (191)
T cd04112          81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAK  160 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            99999999999999999988776667899999999999766667778888888888999999999999999999999999


Q ss_pred             HHHHHhccCCCCCCCCCCccccCCCCCCCCCCCC
Q 028792          168 SIKNRMASQPASNNARPPTVQIRGQPVNQKSGCC  201 (203)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (203)
                      .+.+.....+...+ ..  ...-.+..+++++||
T Consensus       161 ~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~  191 (191)
T cd04112         161 ELKHRKYEQPDEGK-FK--ISDYVTKQKKISRCC  191 (191)
T ss_pred             HHHHhccccCCCCc-EE--eccccCcccccCCCC
Confidence            99877655443322 12  333334556778887

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.4e-36  Score=211.78  Aligned_cols=175  Identities=53%  Similarity=0.843  Sum_probs=167.6

Q ss_pred             CCCCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCC
Q 028792            2 NNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGA   81 (203)
Q Consensus         2 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~   81 (203)
                      +++.+|.|||+++|++++|||-|+.++..+++.....+|++.++....+.++++.++.+||||.|+++|+.....+++.+
T Consensus         8 ~~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgA   87 (222)
T KOG0087|consen    8 SEEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGA   87 (222)
T ss_pred             ccccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhccc
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHH
Q 028792           82 HGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQA  161 (203)
Q Consensus        82 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~  161 (203)
                      .++++|||++...+|+.+..|+.+++.+...++++++|+||+||..-+.+..++...++++.+..++++||.++.+++++
T Consensus        88 vGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~a  167 (222)
T KOG0087|consen   88 VGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEKA  167 (222)
T ss_pred             ceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHHHH
Confidence            99999999999999999999999999999989999999999999998899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhccC
Q 028792          162 FMAMAASIKNRMASQ  176 (203)
Q Consensus       162 ~~~l~~~~~~~~~~~  176 (203)
                      |..++..+.+..++.
T Consensus       168 F~~~l~~I~~~vs~k  182 (222)
T KOG0087|consen  168 FERVLTEIYKIVSKK  182 (222)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999888765554

>cd04144 Ras2 Ras2 subfamily

Probab=100.00  E-value=3.4e-36  Score=218.17  Aligned_cols=185  Identities=32%  Similarity=0.580  Sum_probs=153.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEEe
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYD   89 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   89 (203)
                      +|+++|.+|+|||||+++|..+.+...+.++.+..+ ...+..++..+.+.+||+||++++..++..++..+|++++|||
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   79 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS   79 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence            589999999999999999998888777777776444 3445677878889999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhcC---CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHH
Q 028792           90 VTDQESFNNVKQWLNEIDRYAS---ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMA  166 (203)
Q Consensus        90 ~~~~~s~~~~~~~~~~l~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  166 (203)
                      ++++++++.+..|+..+.....   .+.|+++|+||+|+.....+..++...++..++++++++||++|.|++++|.++.
T Consensus        80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~  159 (190)
T cd04144          80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLV  159 (190)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence            9999999999999988866542   4689999999999977677777778888888899999999999999999999999


Q ss_pred             HHHHHHhccCCCCCCCCCCccccCCCCCCCCCCCCC
Q 028792          167 ASIKNRMASQPASNNARPPTVQIRGQPVNQKSGCCS  202 (203)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (203)
                      +.+.+++....      ++ ....+.+++++.+|||
T Consensus       160 ~~l~~~~~~~~------~~-~~~~~~~~~~~~~~~~  188 (190)
T cd04144         160 RALRQQRQGGQ------GP-KGGPTKKKEKKKRKCV  188 (190)
T ss_pred             HHHHHhhcccC------CC-cCCCCCcccccccCce
Confidence            98876655432      22 3334455556666766

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=3.8e-37  Score=203.92  Aligned_cols=171  Identities=63%  Similarity=0.980  Sum_probs=162.9

Q ss_pred             CCCCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCC
Q 028792            2 NNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGA   81 (203)
Q Consensus         2 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~   81 (203)
                      --+.+..++.+|+|++|+|||+|+.++..+.+..+|..|++.++..+++.++|..+++.|||+.|+++++.+...+++..
T Consensus         2 ar~~dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgt   81 (198)
T KOG0079|consen    2 ARDYDHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGT   81 (198)
T ss_pred             cccHHHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCC
Confidence            34567789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHH
Q 028792           82 HGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQA  161 (203)
Q Consensus        82 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~  161 (203)
                      +++|+|||+++.+||.+...|++.+....+ ..|-++|+||.|.++.+.+..+++..|+...++.+|++||+++++++.+
T Consensus        82 hgv~vVYDVTn~ESF~Nv~rWLeei~~ncd-sv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~m  160 (198)
T KOG0079|consen   82 HGVIVVYDVTNGESFNNVKRWLEEIRNNCD-SVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAM  160 (198)
T ss_pred             ceEEEEEECcchhhhHhHHHHHHHHHhcCc-cccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHH
Confidence            999999999999999999999999988877 5888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHh
Q 028792          162 FMAMAASIKNRM  173 (203)
Q Consensus       162 ~~~l~~~~~~~~  173 (203)
                      |.-|.+++++..
T Consensus       161 F~cit~qvl~~k  172 (198)
T KOG0079|consen  161 FHCITKQVLQAK  172 (198)
T ss_pred             HHHHHHHHHHHH
Confidence            999999998876

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.2e-36  Score=202.76  Aligned_cols=179  Identities=49%  Similarity=0.832  Sum_probs=170.0

Q ss_pred             CCCCCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccC
Q 028792            1 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRG   80 (203)
Q Consensus         1 ~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~   80 (203)
                      |++.+++.+|++++|+.|+|||.|+++++...+......|++.++....+.+.++.++++|||+.|++++++..+.+++.
T Consensus         2 msEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRG   81 (214)
T KOG0086|consen    2 MSETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRG   81 (214)
T ss_pred             cchhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhcc
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHH
Q 028792           81 AHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQ  160 (203)
Q Consensus        81 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  160 (203)
                      +.+.++|||++++++|..+..|+..++....+++-+++++||.|+.+.+++...++.+|++...+.+.++||++|++++|
T Consensus        82 AAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEE  161 (214)
T KOG0086|consen   82 AAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEE  161 (214)
T ss_pred             ccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHH
Confidence            99999999999999999999999999999988888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhccCCCC
Q 028792          161 AFMAMAASIKNRMASQPAS  179 (203)
Q Consensus       161 ~~~~l~~~~~~~~~~~~~~  179 (203)
                      .|-.....++.+.+..+..
T Consensus       162 aFl~c~~tIl~kIE~GElD  180 (214)
T KOG0086|consen  162 AFLKCARTILNKIESGELD  180 (214)
T ss_pred             HHHHHHHHHHHHHhhcCCC
Confidence            9999999998877665543

>cd04111 Rab39 Rab39 subfamily

Probab=100.00  E-value=1.7e-35  Score=217.53  Aligned_cols=171  Identities=46%  Similarity=0.793  Sum_probs=152.1

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEE-CCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQ-DGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      +.+||+++|++|+|||||+++|.++.+...+.++.+.++....+.. ++..+.+.+||++|++++...+..++.++|+++
T Consensus         1 ~~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (211)
T cd04111           1 YQFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVL   80 (211)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEE
Confidence            4689999999999999999999999888888888888877777766 466789999999999999998999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHH
Q 028792           86 VVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMA  164 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  164 (203)
                      +|||++++++++.+..|+..+..... ...|+++|+||.|+.....+..++..++++.++++++++||++|.|++++|++
T Consensus        81 lv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~  160 (211)
T cd04111          81 LVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFEL  160 (211)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999998876543 45778999999999877778888889999999999999999999999999999


Q ss_pred             HHHHHHHHhccCC
Q 028792          165 MAASIKNRMASQP  177 (203)
Q Consensus       165 l~~~~~~~~~~~~  177 (203)
                      |.+.+.++..+.+
T Consensus       161 l~~~~~~~~~~~~  173 (211)
T cd04111         161 LTQEIYERIKRGE  173 (211)
T ss_pred             HHHHHHHHhhcCC
Confidence            9999988766654

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PTZ00369 Ras-like protein; Provisional

Probab=100.00  E-value=1.3e-35  Score=215.01  Aligned_cols=183  Identities=34%  Similarity=0.625  Sum_probs=154.0

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEE
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV   86 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (203)
                      ..+||+++|.+|+|||||++++..+.+...+.++.+..+ ...+..++..+.+.+||+||++++..++..++..+|++++
T Consensus         4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil   82 (189)
T PTZ00369          4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC   82 (189)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence            469999999999999999999999888777777776554 4566678888899999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHH
Q 028792           87 VYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAM  165 (203)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  165 (203)
                      |||++++++++.+..|+..+..... .+.|+++++||.|+.+...+..++...++..++++++++||++|.|++++|.+|
T Consensus        83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~l  162 (189)
T PTZ00369         83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYEL  162 (189)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHH
Confidence            9999999999999999988866543 478999999999987666677777888888888999999999999999999999


Q ss_pred             HHHHHHHhccCCCCCCCCCCccccCCCCCCCCCCCCC
Q 028792          166 AASIKNRMASQPASNNARPPTVQIRGQPVNQKSGCCS  202 (203)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (203)
                      .+.+.+......            ..+.++++.|.||
T Consensus       163 ~~~l~~~~~~~~------------~~~~~~~~~~~~~  187 (189)
T PTZ00369        163 VREIRKYLKEDM------------PSQKQKKKGGLCL  187 (189)
T ss_pred             HHHHHHHhhccc------------hhhhhhccCCeee
Confidence            998876544332            2234455666676

>cd04122 Rab14 Rab14 subfamily

Probab=100.00  E-value=2.2e-35  Score=209.57  Aligned_cols=164  Identities=50%  Similarity=0.890  Sum_probs=150.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEE
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVV   87 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (203)
                      .+||+++|++|+|||||+++|..+.+...+.++.+.++....+..++..+.+.+||+||+.++...+..++.++|++++|
T Consensus         2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   81 (166)
T cd04122           2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   81 (166)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence            58999999999999999999999998888888888888777788888889999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHH
Q 028792           88 YDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAA  167 (203)
Q Consensus        88 ~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  167 (203)
                      ||++++++++.+..|+..+......+.|+++|+||+|+.....+..+++.++++..+++++++||++|.|++++|.++.+
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~  161 (166)
T cd04122          82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAK  161 (166)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            99999999999999999887776667899999999999887778888899999999999999999999999999999998


Q ss_pred             HHHH
Q 028792          168 SIKN  171 (203)
Q Consensus       168 ~~~~  171 (203)
                      .+.+
T Consensus       162 ~~~~  165 (166)
T cd04122         162 KIYQ  165 (166)
T ss_pred             HHhh
Confidence            7753

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04125 RabA_like RabA-like subfamily

Probab=100.00  E-value=6.3e-35  Score=211.22  Aligned_cols=170  Identities=61%  Similarity=0.953  Sum_probs=153.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEE
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVY   88 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (203)
                      +||+++|++|||||||+++|.++.+...+.++.+.++....+..++..+.+.+||++|...+...+..++.++|++++||
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~   80 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY   80 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence            58999999999999999999999988777888888887778888888899999999999999989999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHHH
Q 028792           89 DVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAAS  168 (203)
Q Consensus        89 d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~  168 (203)
                      |+++++++..+..|+..+........|+++++||.|+.+...+..++...++...+++++++||++|.|++++|.+|.+.
T Consensus        81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~  160 (188)
T cd04125          81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKL  160 (188)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999999999999887766668999999999998777777888888888889999999999999999999999999


Q ss_pred             HHHHhccCCC
Q 028792          169 IKNRMASQPA  178 (203)
Q Consensus       169 ~~~~~~~~~~  178 (203)
                      +..+....+.
T Consensus       161 ~~~~~~~~~~  170 (188)
T cd04125         161 IIKRLEEQEL  170 (188)
T ss_pred             HHHHhhcCcC
Confidence            9876655443

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=100.00  E-value=5.5e-35  Score=207.71  Aligned_cols=166  Identities=67%  Similarity=1.128  Sum_probs=151.3

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      ++.+||+++|++|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..++.++|+++
T Consensus         1 ~~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i   80 (167)
T cd01867           1 DYLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGII   80 (167)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEE
Confidence            46799999999999999999999999998888888888887778888888899999999999999888889999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHH
Q 028792           86 VVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAM  165 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  165 (203)
                      +|||+++++++..+..|+..+......+.|+++++||+|+.+......++...++..++.+++++||++|.|++++|.++
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i  160 (167)
T cd01867          81 LVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTL  160 (167)
T ss_pred             EEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999999887665678999999999998766677788888999889999999999999999999999


Q ss_pred             HHHHHH
Q 028792          166 AASIKN  171 (203)
Q Consensus       166 ~~~~~~  171 (203)
                      .+.+..
T Consensus       161 ~~~~~~  166 (167)
T cd01867         161 AKDIKK  166 (167)
T ss_pred             HHHHHh
Confidence            998864

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04109 Rab28 Rab28 subfamily

Probab=100.00  E-value=1.3e-34  Score=213.57  Aligned_cols=164  Identities=35%  Similarity=0.594  Sum_probs=147.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECC-eEEEEEEEeCCChhhhchhhhccccCCcEEEEE
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDG-KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVV   87 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (203)
                      +||+++|++|+|||||+++|.+..+...+.+|.+.++....+.+++ ..+.+.+||++|+..+..++..++.++|++|+|
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV   80 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV   80 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence            5899999999999999999999999888889998888887777754 568999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcC---CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHH
Q 028792           88 YDVTDQESFNNVKQWLNEIDRYAS---ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMA  164 (203)
Q Consensus        88 ~d~~~~~s~~~~~~~~~~l~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  164 (203)
                      ||++++++|+.+..|+..+.....   .+.|+++|+||.|+.+.+.+..++..++++.++++++++||++|+|++++|++
T Consensus        81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~  160 (215)
T cd04109          81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQ  160 (215)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence            999999999999999999877643   34689999999999877778888889999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 028792          165 MAASIKNR  172 (203)
Q Consensus       165 l~~~~~~~  172 (203)
                      |.+.+...
T Consensus       161 l~~~l~~~  168 (215)
T cd04109         161 LAAELLGV  168 (215)
T ss_pred             HHHHHHhc
Confidence            99988764

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04118 Rab24 Rab24 subfamily

Probab=100.00  E-value=3.1e-34  Score=208.42  Aligned_cols=188  Identities=33%  Similarity=0.620  Sum_probs=152.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCC-CCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEE
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDSYLE-SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVV   87 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (203)
                      +||+|+|++|+|||||+++|.++.+.. .+.++.+..+....+..++..+.+.+||++|..++...+..++..+|++++|
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv   80 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC   80 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence            589999999999999999999988864 5667777777777888888889999999999999988888899999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC----cccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHH
Q 028792           88 YDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN----KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFM  163 (203)
Q Consensus        88 ~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  163 (203)
                      ||++++.+++.+..|+..+.... .+.|+++|+||+|+.+.    ..+..+++.+++...+++++++||++|+|++++|+
T Consensus        81 ~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  159 (193)
T cd04118          81 YDLTDSSSFERAKFWVKELQNLE-EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQ  159 (193)
T ss_pred             EECCCHHHHHHHHHHHHHHHhcC-CCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence            99999999999999998887653 36899999999998643    34455677888888889999999999999999999


Q ss_pred             HHHHHHHHHhccCCCCCCCCCCccccCCCCCCCCCCCC
Q 028792          164 AMAASIKNRMASQPASNNARPPTVQIRGQPVNQKSGCC  201 (203)
Q Consensus       164 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (203)
                      +|.+.+.+......... +...   ...++.+..++||
T Consensus       160 ~i~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~  193 (193)
T cd04118         160 KVAEDFVSRANNQMNTE-KGVD---LGQKKNSYFYSCC  193 (193)
T ss_pred             HHHHHHHHhcccccCCC-Cccc---cCCcCCCCCCCCC
Confidence            99999876554332222 1111   2223335777787

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.6e-35  Score=195.01  Aligned_cols=173  Identities=51%  Similarity=0.962  Sum_probs=164.8

Q ss_pred             CCCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCc
Q 028792            3 NEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAH   82 (203)
Q Consensus         3 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d   82 (203)
                      ...++.+|++++|...+|||||+.++..+.+.+.+.+|.+.++..+++-...+.+++++|||.|+++|+.+...++++++
T Consensus        16 qnFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgam   95 (193)
T KOG0093|consen   16 QNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAM   95 (193)
T ss_pred             ccccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccc
Confidence            36788899999999999999999999999999999999999999998888888899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHH
Q 028792           83 GIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAF  162 (203)
Q Consensus        83 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~  162 (203)
                      ++|+|||+++.++|..++.|.-.+..+...+.|+|+++||+|+.+++.++.+....++..+|..+|++||+.+.++..+|
T Consensus        96 gfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~F  175 (193)
T KOG0093|consen   96 GFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVKQVF  175 (193)
T ss_pred             eEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHHHHH
Confidence            99999999999999999999999999988999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcc
Q 028792          163 MAMAASIKNRMAS  175 (203)
Q Consensus       163 ~~l~~~~~~~~~~  175 (203)
                      +.+...+-+.++.
T Consensus       176 e~lv~~Ic~kmse  188 (193)
T KOG0093|consen  176 ERLVDIICDKMSE  188 (193)
T ss_pred             HHHHHHHHHHhhh
Confidence            9999988776654

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=100.00  E-value=1.7e-34  Score=206.04  Aligned_cols=165  Identities=32%  Similarity=0.552  Sum_probs=146.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEE
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVV   87 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (203)
                      .++|+++|.+|+|||||++++..+.++..+.++.+..+ ...+..++..+.+.+||+||+.++..++..++..+|++|+|
T Consensus         2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv   80 (172)
T cd04141           2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC   80 (172)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence            48999999999999999999999998887777776444 34566788889999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHH
Q 028792           88 YDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMA  166 (203)
Q Consensus        88 ~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  166 (203)
                      ||++++++|..+..|+..+..... .+.|+++|+||+|+.+.+.++.++...+++..++++++|||++|.|++++|.+|.
T Consensus        81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~  160 (172)
T cd04141          81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLV  160 (172)
T ss_pred             EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHH
Confidence            999999999999998887766533 5799999999999987777888889999999999999999999999999999999


Q ss_pred             HHHHHHh
Q 028792          167 ASIKNRM  173 (203)
Q Consensus       167 ~~~~~~~  173 (203)
                      ..+.+..
T Consensus       161 ~~~~~~~  167 (172)
T cd04141         161 REIRRKE  167 (172)
T ss_pred             HHHHHhc
Confidence            9887643

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=100.00  E-value=2.1e-34  Score=204.53  Aligned_cols=164  Identities=88%  Similarity=1.329  Sum_probs=149.3

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEE
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV   86 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (203)
                      +.+||+++|++|+|||||+++|.++.+...+.++.+.++....+..++..+.+.+||+||++++...+..+++.+|++++
T Consensus         1 ~~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~   80 (166)
T cd01869           1 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII   80 (166)
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEE
Confidence            35899999999999999999999998888878888878877888888888899999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHH
Q 028792           87 VYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMA  166 (203)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  166 (203)
                      |||+++++++..+..|+..+......+.|+++++||.|+.....+..++...+++..+++++++||++|+|++++|.+|.
T Consensus        81 v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~  160 (166)
T cd01869          81 VYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMA  160 (166)
T ss_pred             EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHH
Confidence            99999999999999999998777655789999999999987777788888999999999999999999999999999999


Q ss_pred             HHHH
Q 028792          167 ASIK  170 (203)
Q Consensus       167 ~~~~  170 (203)
                      +.+.
T Consensus       161 ~~~~  164 (166)
T cd01869         161 REIK  164 (166)
T ss_pred             HHHH
Confidence            8775

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04117 Rab15 Rab15 subfamily

Probab=100.00  E-value=1.6e-34  Score=204.22  Aligned_cols=160  Identities=49%  Similarity=0.920  Sum_probs=147.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEE
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVY   88 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (203)
                      ++|+++|++|+|||||++++..+.+.+.+.++.+.++....+..++..+.+.+||++|+.++...+..++.++|++++||
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY   80 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence            58999999999999999999999998888888888887788888888899999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHHH
Q 028792           89 DVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAAS  168 (203)
Q Consensus        89 d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~  168 (203)
                      |++++++|+.+..|+..+......+.|+++|+||.|+...+.+..++...+++.++++++++||++|.|++++|.+|.+.
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~  160 (161)
T cd04117          81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL  160 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence            99999999999999998877665579999999999998777788888999999899999999999999999999999864

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=100.00  E-value=1.4e-34  Score=207.74  Aligned_cols=164  Identities=30%  Similarity=0.597  Sum_probs=146.0

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEE
Q 028792            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI   84 (203)
Q Consensus         5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (203)
                      ....+||+++|++|+|||||++++..+.+...+.||.+..+. ..+..++..+.+.+||++|++++..++..++.++|++
T Consensus         2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~-~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~   80 (182)
T cd04172           2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV   80 (182)
T ss_pred             CcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeE-EEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEE
Confidence            346789999999999999999999999998888888875553 5677888899999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCC------------CcccCHHHHHHHHHHcCC-CEEEE
Q 028792           85 IVVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTA------------NKVVSYETAKAFADEIGI-PFMET  150 (203)
Q Consensus        85 i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~iiv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~  150 (203)
                      ++|||++++++|+.+ ..|+..+....+ +.|+++|+||.|+.+            .+.+..+++.++++.+++ +|++|
T Consensus        81 ilvyDit~~~Sf~~~~~~w~~~i~~~~~-~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~  159 (182)
T cd04172          81 LICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC  159 (182)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEEC
Confidence            999999999999997 789999877654 689999999999864            245888999999999996 89999


Q ss_pred             ecCCCCC-HHHHHHHHHHHHH
Q 028792          151 SAKSATN-VEQAFMAMAASIK  170 (203)
Q Consensus       151 Sa~~~~g-i~~~~~~l~~~~~  170 (203)
                      ||++|+| ++++|..+++.+.
T Consensus       160 SAk~~~n~v~~~F~~~~~~~~  180 (182)
T cd04172         160 SALQSENSVRDIFHVATLACV  180 (182)
T ss_pred             CcCCCCCCHHHHHHHHHHHHh
Confidence            9999998 9999999998654

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd04127 Rab27A Rab27a subfamily

Probab=100.00  E-value=2.9e-34  Score=206.36  Aligned_cols=167  Identities=45%  Similarity=0.836  Sum_probs=148.9

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEEC----------CeEEEEEEEeCCChhhhchhhh
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQD----------GKTIKLQIWDTAGQERFRTITS   75 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~i~D~~g~~~~~~~~~   75 (203)
                      ++.+||+++|++|+|||||+++|..+.+...+.++.+.++....+.+.          +..+.+.+||+||++++...+.
T Consensus         2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~   81 (180)
T cd04127           2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTT   81 (180)
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHH
Confidence            577999999999999999999999999988888888877776666554          4568899999999999999999


Q ss_pred             ccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCC
Q 028792           76 SYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKS  154 (203)
Q Consensus        76 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  154 (203)
                      .++.++|++++|||+++++++..+..|+..+..... .+.|+++|+||+|+.+.+.+..++..++++..+++++++||++
T Consensus        82 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~  161 (180)
T cd04127          82 AFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAAT  161 (180)
T ss_pred             HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCC
Confidence            999999999999999999999999999998876543 4689999999999987777888889999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHH
Q 028792          155 ATNVEQAFMAMAASIKNR  172 (203)
Q Consensus       155 ~~gi~~~~~~l~~~~~~~  172 (203)
                      |.|++++|.+|.+.+.++
T Consensus       162 ~~~v~~l~~~l~~~~~~~  179 (180)
T cd04127         162 GTNVEKAVERLLDLVMKR  179 (180)
T ss_pred             CCCHHHHHHHHHHHHHhh
Confidence            999999999999887653

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=1.6e-35  Score=198.38  Aligned_cols=170  Identities=36%  Similarity=0.704  Sum_probs=159.7

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEE
Q 028792            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI   84 (203)
Q Consensus         5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (203)
                      ..+.|||+++|..=+|||||+-++..++|.....+|....+..+.+.+.+....++||||.|+++|..+-..+++.++++
T Consensus        10 ~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGa   89 (218)
T KOG0088|consen   10 KSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGA   89 (218)
T ss_pred             CceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCce
Confidence            45789999999999999999999999999888888887788888888888889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHH
Q 028792           85 IVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMA  164 (203)
Q Consensus        85 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  164 (203)
                      ++|||++|+++|..+..|..+++......+-++||+||+|+.+.+.+..+++.+++...++.|+++||+++.||.++|..
T Consensus        90 lLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe~  169 (218)
T KOG0088|consen   90 LLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGISELFES  169 (218)
T ss_pred             EEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccCHHHHHHH
Confidence            99999999999999999999999998878899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhc
Q 028792          165 MAASIKNRMA  174 (203)
Q Consensus       165 l~~~~~~~~~  174 (203)
                      |.....+..+
T Consensus       170 Lt~~MiE~~s  179 (218)
T KOG0088|consen  170 LTAKMIEHSS  179 (218)
T ss_pred             HHHHHHHHhh
Confidence            9998887653

>cd01865 Rab3 Rab3 subfamily

Probab=100.00  E-value=4e-34  Score=202.89  Aligned_cols=162  Identities=52%  Similarity=0.941  Sum_probs=146.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEE
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVY   88 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (203)
                      +||+++|++|+|||||+++|.++.+...+.++.+.++....+..++..+.+.+||+||++++...+..++..+|++++||
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~   81 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY   81 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence            79999999999999999999999988888888877777777777777899999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHHH
Q 028792           89 DVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAAS  168 (203)
Q Consensus        89 d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~  168 (203)
                      |++++++++.+..|+..+........|+++++||+|+.+.+....++..+++..++++++++||++|.|++++|++|...
T Consensus        82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~  161 (165)
T cd01865          82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDI  161 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            99999999999999999877665678999999999998777777788888888889999999999999999999999887


Q ss_pred             HH
Q 028792          169 IK  170 (203)
Q Consensus       169 ~~  170 (203)
                      +.
T Consensus       162 ~~  163 (165)
T cd01865         162 IC  163 (165)
T ss_pred             HH
Confidence            64

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=100.00  E-value=5.6e-34  Score=210.74  Aligned_cols=169  Identities=27%  Similarity=0.546  Sum_probs=148.9

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcE
Q 028792            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG   83 (203)
Q Consensus         4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   83 (203)
                      +....+||+++|++|||||||+++|..+.+...+.+|++..+. ..+..++..+.+.+|||+|++++..+...++.++|+
T Consensus         9 ~~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~   87 (232)
T cd04174           9 PLVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA   87 (232)
T ss_pred             CceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcE
Confidence            4456799999999999999999999999999888888876654 457788889999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCC------------CcccCHHHHHHHHHHcCC-CEEE
Q 028792           84 IIVVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTA------------NKVVSYETAKAFADEIGI-PFME  149 (203)
Q Consensus        84 ~i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~iiv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~  149 (203)
                      +|+|||++++++|..+ ..|+..+..... +.|+++|+||+|+.+            .+.+..+++.++++.+++ .|++
T Consensus        88 vIlVyDit~~~Sf~~~~~~w~~~i~~~~~-~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~E  166 (232)
T cd04174          88 VLLCFDISRPETVDSALKKWKAEIMDYCP-STRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLE  166 (232)
T ss_pred             EEEEEECCChHHHHHHHHHHHHHHHHhCC-CCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEE
Confidence            9999999999999984 789999877654 689999999999864            256788899999999998 6999


Q ss_pred             EecCCCC-CHHHHHHHHHHHHHHHhc
Q 028792          150 TSAKSAT-NVEQAFMAMAASIKNRMA  174 (203)
Q Consensus       150 ~Sa~~~~-gi~~~~~~l~~~~~~~~~  174 (203)
                      |||++|+ |++++|..+...+.++..
T Consensus       167 tSAktg~~~V~e~F~~~~~~~~~~~~  192 (232)
T cd04174         167 CSAFTSEKSIHSIFRSASLLCLNKLS  192 (232)
T ss_pred             ccCCcCCcCHHHHHHHHHHHHHHhcc
Confidence            9999998 899999999998876533

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04133 Rop_like Rop subfamily

Probab=100.00  E-value=2.6e-34  Score=205.14  Aligned_cols=160  Identities=34%  Similarity=0.661  Sum_probs=143.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEE
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVY   88 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (203)
                      +||+++|.+|+|||||+.++..+.+...+.+|.+..+ ...+..++..+++.+||++|++++..++..++.++|++|+||
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy   80 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   80 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence            7999999999999999999999999888888887655 445667888899999999999999999999999999999999


Q ss_pred             eCCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCCc----------ccCHHHHHHHHHHcCC-CEEEEecCCCC
Q 028792           89 DVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTANK----------VVSYETAKAFADEIGI-PFMETSAKSAT  156 (203)
Q Consensus        89 d~~~~~s~~~~-~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~  156 (203)
                      |++++++|+.+ ..|+..+..... +.|+++|+||+|+.+.+          .+..++..++++..++ .+++|||++|.
T Consensus        81 d~~~~~Sf~~~~~~w~~~i~~~~~-~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~  159 (176)
T cd04133          81 SLISRASYENVLKKWVPELRHYAP-NVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ  159 (176)
T ss_pred             EcCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence            99999999998 689998876654 69999999999996542          4778889999999998 59999999999


Q ss_pred             CHHHHHHHHHHHHH
Q 028792          157 NVEQAFMAMAASIK  170 (203)
Q Consensus       157 gi~~~~~~l~~~~~  170 (203)
                      |++++|..+.+.+.
T Consensus       160 nV~~~F~~~~~~~~  173 (176)
T cd04133         160 NVKAVFDAAIKVVL  173 (176)
T ss_pred             CHHHHHHHHHHHHh
Confidence            99999999998763

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd01875 RhoG RhoG subfamily

Probab=100.00  E-value=6.1e-34  Score=206.40  Aligned_cols=163  Identities=29%  Similarity=0.583  Sum_probs=141.6

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEE
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV   86 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (203)
                      ..+||+++|..|+|||||++++..+.+...+.+|.+..+. ..+.+++..+.+.+||++|++++..++..++.++|++|+
T Consensus         2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~il   80 (191)
T cd01875           2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYS-AQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFII   80 (191)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeE-EEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEE
Confidence            3589999999999999999999999998888888875543 445678888999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCc------------ccCHHHHHHHHHHcC-CCEEEEec
Q 028792           87 VYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTANK------------VVSYETAKAFADEIG-IPFMETSA  152 (203)
Q Consensus        87 v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~~~------------~~~~~~~~~~~~~~~-~~~~~~Sa  152 (203)
                      |||++++++|+.+. .|+..+.... .+.|+++|+||.|+.+..            .+..++..+++..++ ++++++||
T Consensus        81 vydit~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA  159 (191)
T cd01875          81 CFSIASPSSYENVRHKWHPEVCHHC-PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSA  159 (191)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCC
Confidence            99999999999997 5887776554 369999999999996542            356678888999888 58999999


Q ss_pred             CCCCCHHHHHHHHHHHHHH
Q 028792          153 KSATNVEQAFMAMAASIKN  171 (203)
Q Consensus       153 ~~~~gi~~~~~~l~~~~~~  171 (203)
                      ++|+|++++|.+|.+.+..
T Consensus       160 k~g~~v~e~f~~l~~~~~~  178 (191)
T cd01875         160 LNQDGVKEVFAEAVRAVLN  178 (191)
T ss_pred             CCCCCHHHHHHHHHHHHhc
Confidence            9999999999999988753

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd01868 Rab11_like Rab11-like

Probab=100.00  E-value=6.5e-34  Score=201.75  Aligned_cols=164  Identities=55%  Similarity=0.895  Sum_probs=149.3

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      ++.++|+++|++|||||||+++|.++.+...+.++.+.++....+..++..+.+.+||+||+.++...+..++..+++++
T Consensus         1 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i   80 (165)
T cd01868           1 DYLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGAL   80 (165)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEE
Confidence            36789999999999999999999999888888888888888888888888889999999999999998999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHH
Q 028792           86 VVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAM  165 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  165 (203)
                      +|+|+++++++..+..|+..+......+.|+++|+||.|+...+....++...++...+++++++||++|.|++++|++|
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  160 (165)
T cd01868          81 LVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQL  160 (165)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence            99999999999999999999887766678999999999998777777888888888888999999999999999999999


Q ss_pred             HHHH
Q 028792          166 AASI  169 (203)
Q Consensus       166 ~~~~  169 (203)
                      .+.+
T Consensus       161 ~~~i  164 (165)
T cd01868         161 LTEI  164 (165)
T ss_pred             HHHh
Confidence            8764

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=1e-34  Score=195.44  Aligned_cols=201  Identities=41%  Similarity=0.671  Sum_probs=174.3

Q ss_pred             CCCCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEE-CCeEEEEEEEeCCChhhhchhhhccccC
Q 028792            2 NNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQ-DGKTIKLQIWDTAGQERFRTITSSYYRG   80 (203)
Q Consensus         2 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~   80 (203)
                      +.-..|.++++++|++-+|||+|++.+..++++.-..||++.++....+.. +|..+++++|||.|++++++....++++
T Consensus         2 epif~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrn   81 (213)
T KOG0091|consen    2 EPIFHYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRN   81 (213)
T ss_pred             CcceEEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhc
Confidence            345678999999999999999999999999999999999999999887764 5777999999999999999999999999


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCH
Q 028792           81 AHGIIVVYDVTDQESFNNVKQWLNEIDRYAS--ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNV  158 (203)
Q Consensus        81 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  158 (203)
                      +-++++|||++++++|+.+..|+.+......  ...-+.+|++|.|+...++++.++++.+++.++..++++||++|.|+
T Consensus        82 svgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NV  161 (213)
T KOG0091|consen   82 SVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNV  161 (213)
T ss_pred             ccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcH
Confidence            9999999999999999999999998765544  34446788999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhccCCCCC--------CCCCCccccCCCCCCCCCCCCC
Q 028792          159 EQAFMAMAASIKNRMASQPASN--------NARPPTVQIRGQPVNQKSGCCS  202 (203)
Q Consensus       159 ~~~~~~l~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~  202 (203)
                      ++.|..|.+.+.....+..-..        .-++.....++.-++....|||
T Consensus       162 eEAF~mlaqeIf~~i~qGeik~edgw~gvKSsrpn~i~~s~~~~~P~k~c~C  213 (213)
T KOG0091|consen  162 EEAFDMLAQEIFQAIQQGEIKLEDGWGGVKSSRPNQIPRSPSRKQPSKPCQC  213 (213)
T ss_pred             HHHHHHHHHHHHHHHhcCceeeeeccccccccCCCcCCCcccccCCCCCCCC
Confidence            9999999999988776632211        2455555566666667778888

>cd01866 Rab2 Rab2 subfamily

Probab=100.00  E-value=8.1e-34  Score=201.91  Aligned_cols=166  Identities=55%  Similarity=0.940  Sum_probs=151.0

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      ++.+||+++|.+|+|||||+++|.+..+...+.++.+.++....+..++....+.+||+||++++......++..+|+++
T Consensus         2 ~~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il   81 (168)
T cd01866           2 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL   81 (168)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence            57799999999999999999999999888887788888888888888888889999999999999888889999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHH
Q 028792           86 VVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAM  165 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  165 (203)
                      +|+|+++++++..+..|+..+......+.|+++|+||.|+.+...+..++...++...++.++++||+++.|++++|.++
T Consensus        82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~  161 (168)
T cd01866          82 LVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINT  161 (168)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999999877665679999999999998767778888888998889999999999999999999999


Q ss_pred             HHHHHH
Q 028792          166 AASIKN  171 (203)
Q Consensus       166 ~~~~~~  171 (203)
                      .+.+.+
T Consensus       162 ~~~~~~  167 (168)
T cd01866         162 AKEIYE  167 (168)
T ss_pred             HHHHHh
Confidence            988754

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.2e-34  Score=192.57  Aligned_cols=174  Identities=48%  Similarity=0.858  Sum_probs=162.9

Q ss_pred             CCCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCc
Q 028792            3 NEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAH   82 (203)
Q Consensus         3 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d   82 (203)
                      +++.+.+||+++|..|+|||.|++++..+-+++....|++.++..+++.+++..++++|||+.|++++++....+++.++
T Consensus         2 edykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsah   81 (213)
T KOG0095|consen    2 EDYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAH   81 (213)
T ss_pred             cccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcc
Confidence            36778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHH
Q 028792           83 GIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAF  162 (203)
Q Consensus        83 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~  162 (203)
                      ++|+|||++...+|+-+.+|+.++..+.....--|+|+||.|+.+.++++.+-.++|.+.....++++||++.++++.+|
T Consensus        82 alilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf  161 (213)
T KOG0095|consen   82 ALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLF  161 (213)
T ss_pred             eEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHH
Confidence            99999999999999999999999999988777789999999999988999999999999988999999999999999999


Q ss_pred             HHHHHHHHHHhccC
Q 028792          163 MAMAASIKNRMASQ  176 (203)
Q Consensus       163 ~~l~~~~~~~~~~~  176 (203)
                      ..+...+.......
T Consensus       162 ~~~a~rli~~ar~~  175 (213)
T KOG0095|consen  162 LDLACRLISEARQN  175 (213)
T ss_pred             HHHHHHHHHHHHhc
Confidence            99987776554443

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=100.00  E-value=6.9e-34  Score=201.86  Aligned_cols=162  Identities=31%  Similarity=0.706  Sum_probs=147.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEE
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVY   88 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (203)
                      +||+++|++|+|||||+++|.++.+...+.++.+.++....+..++..+.+++||+||++.+...+..++..+|++|+|+
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY   80 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence            58999999999999999999999998888899888888888888888899999999999999989999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcC-----CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHH
Q 028792           89 DVTDQESFNNVKQWLNEIDRYAS-----ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFM  163 (203)
Q Consensus        89 d~~~~~s~~~~~~~~~~l~~~~~-----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  163 (203)
                      |+++++++..+..|+..+.....     .+.|+++|+||+|+.+......++...++...+++++++||++|.|++++|+
T Consensus        81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  160 (168)
T cd04119          81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQ  160 (168)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence            99999999999999999877643     4689999999999976666778888888888889999999999999999999


Q ss_pred             HHHHHHH
Q 028792          164 AMAASIK  170 (203)
Q Consensus       164 ~l~~~~~  170 (203)
                      +|.+.+.
T Consensus       161 ~l~~~l~  167 (168)
T cd04119         161 TLFSSIV  167 (168)
T ss_pred             HHHHHHh
Confidence            9998775

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd04132 Rho4_like Rho4-like subfamily

Probab=100.00  E-value=1e-33  Score=204.66  Aligned_cols=166  Identities=30%  Similarity=0.602  Sum_probs=141.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEEC-CeEEEEEEEeCCChhhhchhhhccccCCcEEEEE
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQD-GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVV   87 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (203)
                      +||+++|++|+|||||+++|.++.+...+.++....+... +... +..+.+.+||+||++++...+..++..+|++++|
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~-i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   79 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTN-IQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC   79 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEE-EEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence            5899999999999999999999998888777776665443 4443 6778999999999999998888899999999999


Q ss_pred             EeCCChhhHHHHHH-HHHHHHhhcCCCCcEEEEEeCCCCCCCc----ccCHHHHHHHHHHcCC-CEEEEecCCCCCHHHH
Q 028792           88 YDVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDLTANK----VVSYETAKAFADEIGI-PFMETSAKSATNVEQA  161 (203)
Q Consensus        88 ~d~~~~~s~~~~~~-~~~~l~~~~~~~~p~iiv~nK~D~~~~~----~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~  161 (203)
                      ||++++++|+.+.. |+..+.... .+.|+++|+||.|+....    .+..++..+++..+++ +++++||++|.|++++
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~  158 (187)
T cd04132          80 YAVDNPTSLDNVEDKWFPEVNHFC-PGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEV  158 (187)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHH
Confidence            99999999999864 877776543 368999999999986532    4567788889999988 8999999999999999


Q ss_pred             HHHHHHHHHHHhccC
Q 028792          162 FMAMAASIKNRMASQ  176 (203)
Q Consensus       162 ~~~l~~~~~~~~~~~  176 (203)
                      |.++.+.+.......
T Consensus       159 f~~l~~~~~~~~~~~  173 (187)
T cd04132         159 FDTAIEEALKKEGKA  173 (187)
T ss_pred             HHHHHHHHHhhhhhh
Confidence            999999998766544

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>PLN03108 Rab family protein; Provisional

Probab=100.00  E-value=4e-33  Score=204.88  Aligned_cols=169  Identities=53%  Similarity=0.898  Sum_probs=152.7

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      ++.+||+|+|++|+|||||+++|....+...+.++.+.++....+.+++..+.+.+||++|+..+..++..++..+|+++
T Consensus         4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~v   83 (210)
T PLN03108          4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (210)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence            46799999999999999999999998888877888888887788888888889999999999999888889999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHH
Q 028792           86 VVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAM  165 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  165 (203)
                      +|||+++++++..+..|+..+........|+++++||.|+.....+..++..++++.++++++++||+++.|++++|.++
T Consensus        84 lv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~l  163 (210)
T PLN03108         84 LVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKT  163 (210)
T ss_pred             EEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999888776655679999999999998777788888999999999999999999999999999999


Q ss_pred             HHHHHHHhc
Q 028792          166 AASIKNRMA  174 (203)
Q Consensus       166 ~~~~~~~~~  174 (203)
                      .+.+.+...
T Consensus       164 ~~~~~~~~~  172 (210)
T PLN03108        164 AAKIYKKIQ  172 (210)
T ss_pred             HHHHHHHhh
Confidence            998876543

>cd04131 Rnd Rnd subfamily

Probab=100.00  E-value=8.6e-34  Score=203.19  Aligned_cols=161  Identities=31%  Similarity=0.598  Sum_probs=142.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEE
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVV   87 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (203)
                      .+||+++|++|+|||||++++..+.++..+.+|.+..+. ..+.+++..+.+.+||++|++++..+...++.++|++|+|
T Consensus         1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv   79 (178)
T cd04131           1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYT-ASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC   79 (178)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEE-EEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence            379999999999999999999999998888888865553 5677888889999999999999999999999999999999


Q ss_pred             EeCCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCC------------CcccCHHHHHHHHHHcCC-CEEEEecC
Q 028792           88 YDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTA------------NKVVSYETAKAFADEIGI-PFMETSAK  153 (203)
Q Consensus        88 ~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~iiv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~  153 (203)
                      ||++++++|+.+ ..|+..+....+ +.|+++|+||.|+.+            ...+..+++.++++.+++ ++++|||+
T Consensus        80 fdit~~~Sf~~~~~~w~~~i~~~~~-~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~  158 (178)
T cd04131          80 FDISRPETLDSVLKKWRGEIQEFCP-NTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAF  158 (178)
T ss_pred             EECCChhhHHHHHHHHHHHHHHHCC-CCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccC
Confidence            999999999996 789998877654 689999999999864            235788899999999997 79999999


Q ss_pred             CCCC-HHHHHHHHHHHHH
Q 028792          154 SATN-VEQAFMAMAASIK  170 (203)
Q Consensus       154 ~~~g-i~~~~~~l~~~~~  170 (203)
                      +|++ ++++|..+++..+
T Consensus       159 ~~~~~v~~~F~~~~~~~~  176 (178)
T cd04131         159 TSEKSVRDIFHVATMACL  176 (178)
T ss_pred             cCCcCHHHHHHHHHHHHh
Confidence            9995 9999999998654

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01864 Rab19 Rab19 subfamily

Probab=100.00  E-value=1.5e-33  Score=200.00  Aligned_cols=163  Identities=53%  Similarity=0.945  Sum_probs=146.6

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      ++.+||+++|++|+|||||+++|..+.+...+.++.+.++....+..++..+.+.+||+||+.++...+..++..+|+++
T Consensus         1 ~~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~l   80 (165)
T cd01864           1 DFLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAI   80 (165)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEE
Confidence            36799999999999999999999998888887788877777788888888889999999999999988999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-CEEEEecCCCCCHHHHHHH
Q 028792           86 VVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGI-PFMETSAKSATNVEQAFMA  164 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~~~~  164 (203)
                      +|||+++++++..+..|+..+......+.|+++|+||+|+...+....++..++++..+. .++++||++|.|++++|.+
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~  160 (165)
T cd01864          81 IAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLL  160 (165)
T ss_pred             EEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHH
Confidence            999999999999999999998776556799999999999987777777888888888875 6899999999999999999


Q ss_pred             HHHH
Q 028792          165 MAAS  168 (203)
Q Consensus       165 l~~~  168 (203)
                      |.+.
T Consensus       161 l~~~  164 (165)
T cd01864         161 MATE  164 (165)
T ss_pred             HHHh
Confidence            9864

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04128 Spg1 Spg1p

Probab=100.00  E-value=1.3e-33  Score=203.00  Aligned_cols=164  Identities=27%  Similarity=0.552  Sum_probs=143.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEE
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVY   88 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (203)
                      +||+++|..|+|||||+++|..+.+...+.+|.+.++....+..++..+.+.+||++|++++..++..++.++|++++||
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~   80 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF   80 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence            58999999999999999999999998888899988887788888888899999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC-----cccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHH
Q 028792           89 DVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN-----KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFM  163 (203)
Q Consensus        89 d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~-----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  163 (203)
                      |+++++++..+..|+..+........| ++|+||+|+...     .....++..++++..+++++++||++|.|++++|.
T Consensus        81 D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~  159 (182)
T cd04128          81 DLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFK  159 (182)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            999999999999999988776554566 678999998521     11224566778888899999999999999999999


Q ss_pred             HHHHHHHHHh
Q 028792          164 AMAASIKNRM  173 (203)
Q Consensus       164 ~l~~~~~~~~  173 (203)
                      ++.+.+.+..
T Consensus       160 ~l~~~l~~~~  169 (182)
T cd04128         160 IVLAKAFDLP  169 (182)
T ss_pred             HHHHHHHhcC
Confidence            9999887533

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=100.00  E-value=8.9e-34  Score=200.41  Aligned_cols=161  Identities=46%  Similarity=0.863  Sum_probs=152.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEEe
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYD   89 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   89 (203)
                      ||+++|++++|||||+++|.++.++..+.++.+.+.....+..++..+.+.+||++|++++......++.++|++|+|||
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd   80 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD   80 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            79999999999999999999999999999998888999999999999999999999999999888999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHHHH
Q 028792           90 VTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI  169 (203)
Q Consensus        90 ~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~  169 (203)
                      +++++++..+..|+..+........|+++++||.|+.+.+.++.+++.+++..++++++++||+++.|+.++|..+++.+
T Consensus        81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i  160 (162)
T PF00071_consen   81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKI  160 (162)
T ss_dssp             TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            99999999999999999988876799999999999988788999999999999999999999999999999999999987


Q ss_pred             H
Q 028792          170 K  170 (203)
Q Consensus       170 ~  170 (203)
                      .
T Consensus       161 ~  161 (162)
T PF00071_consen  161 L  161 (162)
T ss_dssp             H
T ss_pred             h
Confidence            5

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=100.00  E-value=2.3e-33  Score=206.49  Aligned_cols=165  Identities=27%  Similarity=0.557  Sum_probs=142.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEE
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVY   88 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (203)
                      +||+|+|.+|+|||||+++|..+.++..+.||....+. ..+.+++..+.+.+||++|++.|..++..++.++|++++||
T Consensus         2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf   80 (222)
T cd04173           2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF   80 (222)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence            79999999999999999999999999888898876554 56778888999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHcCC-CEEEEecCC
Q 028792           89 DVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTAN------------KVVSYETAKAFADEIGI-PFMETSAKS  154 (203)
Q Consensus        89 d~~~~~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~  154 (203)
                      |++++++|+.+. .|...+.... .+.|++||+||+|+...            ..+..++...+++..++ +|++|||++
T Consensus        81 dis~~~Sf~~i~~~w~~~~~~~~-~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~  159 (222)
T cd04173          81 DISRPETLDSVLKKWQGETQEFC-PNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRS  159 (222)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCc
Confidence            999999999985 4766665443 47999999999998642            13667889999999995 899999999


Q ss_pred             CCC-HHHHHHHHHHHHHHHhcc
Q 028792          155 ATN-VEQAFMAMAASIKNRMAS  175 (203)
Q Consensus       155 ~~g-i~~~~~~l~~~~~~~~~~  175 (203)
                      +++ ++++|..+......+...
T Consensus       160 ~~~~V~~~F~~~~~~~~~~~~~  181 (222)
T cd04173         160 SERSVRDVFHVATVASLGRGHR  181 (222)
T ss_pred             CCcCHHHHHHHHHHHHHhccCC
Confidence            985 999999999987765443

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>PLN03118 Rab family protein; Provisional

Probab=100.00  E-value=4.8e-33  Score=204.78  Aligned_cols=172  Identities=52%  Similarity=0.811  Sum_probs=146.8

Q ss_pred             CCCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCc
Q 028792            3 NEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAH   82 (203)
Q Consensus         3 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d   82 (203)
                      .+....+||+|+|.+|+|||||+++|.+..+. .+.++.+.++....+..++..+.+.+||+||++++..++..++..+|
T Consensus         9 ~~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d   87 (211)
T PLN03118          9 SGYDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQ   87 (211)
T ss_pred             cccCcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCC
Confidence            45567899999999999999999999987764 45677777777777778888889999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHH-HHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHH
Q 028792           83 GIIVVYDVTDQESFNNVKQ-WLNEIDRYAS-ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQ  160 (203)
Q Consensus        83 ~~i~v~d~~~~~s~~~~~~-~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  160 (203)
                      ++++|||++++++|..+.. |...+..... .+.|+++|+||+|+........++...++..++++++++||+++.|+++
T Consensus        88 ~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~  167 (211)
T PLN03118         88 GIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQ  167 (211)
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence            9999999999999999876 5555544332 4679999999999987667777888888888899999999999999999


Q ss_pred             HHHHHHHHHHHHhcc
Q 028792          161 AFMAMAASIKNRMAS  175 (203)
Q Consensus       161 ~~~~l~~~~~~~~~~  175 (203)
                      +|.+|.+.+.+....
T Consensus       168 l~~~l~~~~~~~~~~  182 (211)
T PLN03118        168 CFEELALKIMEVPSL  182 (211)
T ss_pred             HHHHHHHHHHhhhhh
Confidence            999999998875543

>cd04136 Rap_like Rap-like subfamily

Probab=100.00  E-value=2.2e-33  Score=198.47  Aligned_cols=160  Identities=41%  Similarity=0.697  Sum_probs=140.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEE
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVY   88 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (203)
                      +||+++|++|||||||++++..+.+...+.++.+ +.....+..++..+.+.+||+||++++..++..++..+|++++||
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY   80 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence            7999999999999999999999888777777765 344566777888889999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHH
Q 028792           89 DVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAA  167 (203)
Q Consensus        89 d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  167 (203)
                      |++++++++.+..|+..+..... .+.|+++++||+|+.+.+.+..++...+++.++++++++||++|.|++++|.+|.+
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  160 (163)
T cd04136          81 SITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLVR  160 (163)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Confidence            99999999999999988876543 47899999999999776667777777888888899999999999999999999987


Q ss_pred             HH
Q 028792          168 SI  169 (203)
Q Consensus       168 ~~  169 (203)
                      .+
T Consensus       161 ~~  162 (163)
T cd04136         161 QI  162 (163)
T ss_pred             hc
Confidence            54

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04113 Rab4 Rab4 subfamily

Probab=100.00  E-value=3.6e-33  Score=197.15  Aligned_cols=160  Identities=50%  Similarity=0.864  Sum_probs=146.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEE
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVY   88 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (203)
                      +||+++|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||+..+...+..++..+|++++|+
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence            58999999999999999999999988887788887888888888888899999999999999988999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHHH
Q 028792           89 DVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAAS  168 (203)
Q Consensus        89 d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~  168 (203)
                      |+++++++..+..|+..+......+.|+++++||.|+.+...+..+++..++...++.++++||+++.|++++|.++.+.
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~  160 (161)
T cd04113          81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS  160 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence            99999999999999998877666689999999999998777788888999999999999999999999999999999875

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>smart00175 RAB Rab subfamily of small GTPases

Probab=100.00  E-value=6.3e-33  Score=196.28  Aligned_cols=163  Identities=63%  Similarity=1.004  Sum_probs=148.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEE
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVY   88 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (203)
                      +||+++|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||+..+...+..++..+|++++||
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence            58999999999999999999998888887888888888888888888889999999999999989999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHHH
Q 028792           89 DVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAAS  168 (203)
Q Consensus        89 d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~  168 (203)
                      |++++.+++.+..|+..+......+.|+++++||+|+........+.+.+++...+++++++|+++|.|++++|++|.+.
T Consensus        81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~  160 (164)
T smart00175       81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELARE  160 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999999999999877765689999999999987766777788888888889999999999999999999999998


Q ss_pred             HHH
Q 028792          169 IKN  171 (203)
Q Consensus       169 ~~~  171 (203)
                      +.+
T Consensus       161 ~~~  163 (164)
T smart00175      161 ILK  163 (164)
T ss_pred             Hhh
Confidence            754

Rab GTPases are implicated in vesicle trafficking.

>cd04175 Rap1 Rap1 subgroup

Probab=100.00  E-value=3.5e-33  Score=197.82  Aligned_cols=162  Identities=38%  Similarity=0.669  Sum_probs=141.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEE
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVV   87 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (203)
                      ++||+++|.+|+|||||++++..+.+...+.++.+..+ ...+..++..+.+.+||+||++++..++..++..+|++++|
T Consensus         1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv   79 (164)
T cd04175           1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLV   79 (164)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEE
Confidence            37999999999999999999998887777777776444 35667788888999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHH
Q 028792           88 YDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMA  166 (203)
Q Consensus        88 ~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  166 (203)
                      ||++++.+++.+..|+..+.... ..+.|+++++||+|+.....+..++..++++..+++++++||++|.|++++|.+|.
T Consensus        80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~  159 (164)
T cd04175          80 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLV  159 (164)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHH
Confidence            99999999999999988886653 35799999999999987767777777888888889999999999999999999998


Q ss_pred             HHHH
Q 028792          167 ASIK  170 (203)
Q Consensus       167 ~~~~  170 (203)
                      +.+.
T Consensus       160 ~~l~  163 (164)
T cd04175         160 RQIN  163 (164)
T ss_pred             HHhh
Confidence            7653

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=100.00  E-value=6e-33  Score=205.01  Aligned_cols=166  Identities=31%  Similarity=0.540  Sum_probs=146.1

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      ...+||+++|.+|||||||++++..+.+...+.++.+.++....+..++..+.+.+||++|++++..++..++..+|++|
T Consensus        11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   90 (219)
T PLN03071         11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (219)
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence            67899999999999999999999999988888899988888777777777899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHH
Q 028792           86 VVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAM  165 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  165 (203)
                      +|||+++++++..+..|+..+.... .+.|+++|+||+|+... ....+++ .++...+++++++||++|.|++++|.||
T Consensus        91 lvfD~~~~~s~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~~-~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~l  167 (219)
T PLN03071         91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (219)
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEEchhhhhc-cCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHHHH
Confidence            9999999999999999999987665 36999999999998542 3344444 6777788999999999999999999999


Q ss_pred             HHHHHHHhc
Q 028792          166 AASIKNRMA  174 (203)
Q Consensus       166 ~~~~~~~~~  174 (203)
                      .+.+.+...
T Consensus       168 ~~~~~~~~~  176 (219)
T PLN03071        168 ARKLAGDPN  176 (219)
T ss_pred             HHHHHcCcc
Confidence            998875543

>cd01874 Cdc42 Cdc42 subfamily

Probab=100.00  E-value=4.7e-33  Score=199.06  Aligned_cols=160  Identities=29%  Similarity=0.535  Sum_probs=138.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEE
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVV   87 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (203)
                      .+||+++|.+|+|||||+++|..+.+...+.||.+..+. ..+..++..+.+.+||++|++++...+..++.++|++|+|
T Consensus         1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv   79 (175)
T cd01874           1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC   79 (175)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEE
Confidence            379999999999999999999999998888888875554 3456788889999999999999999898899999999999


Q ss_pred             EeCCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHcC-CCEEEEecC
Q 028792           88 YDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTAN------------KVVSYETAKAFADEIG-IPFMETSAK  153 (203)
Q Consensus        88 ~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~  153 (203)
                      ||++++++|+.+. .|+..+.... .+.|+++|+||+|+.+.            +.+..+++.++++..+ +.++++||+
T Consensus        80 ~d~~~~~s~~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~  158 (175)
T cd01874          80 FSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSAL  158 (175)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCC
Confidence            9999999999997 4888876654 36899999999998653            3556777888888887 689999999


Q ss_pred             CCCCHHHHHHHHHHHH
Q 028792          154 SATNVEQAFMAMAASI  169 (203)
Q Consensus       154 ~~~gi~~~~~~l~~~~  169 (203)
                      +|.|++++|+.++...
T Consensus       159 tg~~v~~~f~~~~~~~  174 (175)
T cd01874         159 TQKGLKNVFDEAILAA  174 (175)
T ss_pred             CCCCHHHHHHHHHHHh
Confidence            9999999999998753

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04106 Rab23_lke Rab23-like subfamily

Probab=100.00  E-value=7.9e-33  Score=195.51  Aligned_cols=159  Identities=36%  Similarity=0.676  Sum_probs=142.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEEC--CeEEEEEEEeCCChhhhchhhhccccCCcEEEE
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQD--GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV   86 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (203)
                      +||+++|.+|+|||||+++|..+.+...+.++.+.++....+...  +..+.+++||+||++++...+..+++++|++++
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~   80 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence            589999999999999999999988888888888877776666666  677899999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHH
Q 028792           87 VYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMA  166 (203)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  166 (203)
                      |||+++++++..+..|+..+..... +.|+++|+||.|+.....+..++...++...+++++++||++|.|++++|++|.
T Consensus        81 v~d~~~~~s~~~l~~~~~~~~~~~~-~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  159 (162)
T cd04106          81 VFSTTDRESFEAIESWKEKVEAECG-DIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLA  159 (162)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            9999999999999999988865543 689999999999987777788888899999999999999999999999999987


Q ss_pred             HH
Q 028792          167 AS  168 (203)
Q Consensus       167 ~~  168 (203)
                      ..
T Consensus       160 ~~  161 (162)
T cd04106         160 EK  161 (162)
T ss_pred             Hh
Confidence            53

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=100.00  E-value=1.5e-32  Score=195.69  Aligned_cols=162  Identities=41%  Similarity=0.684  Sum_probs=142.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEEe
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYD   89 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   89 (203)
                      ||+++|.+|||||||+++|..+.+...+.++.+.++....+..++..+.+++||+||++++..++..++..+|++++|||
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   81 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD   81 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence            79999999999999999999999998888999888887888888888999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCcc--cCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHH
Q 028792           90 VTDQESFNNVKQWLNEIDRY-ASENVNKLLVGNKCDLTANKV--VSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMA  166 (203)
Q Consensus        90 ~~~~~s~~~~~~~~~~l~~~-~~~~~p~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  166 (203)
                      +++++++..+..|+..+... .....|+++|+||.|+.+...  ...++...++..++.+++++||++|.|++++|..|.
T Consensus        82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~  161 (170)
T cd04108          82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVA  161 (170)
T ss_pred             CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            99999999999999987554 334578999999999865433  345566778888889999999999999999999999


Q ss_pred             HHHHH
Q 028792          167 ASIKN  171 (203)
Q Consensus       167 ~~~~~  171 (203)
                      +.+.+
T Consensus       162 ~~~~~  166 (170)
T cd04108         162 ALTFE  166 (170)
T ss_pred             HHHHH
Confidence            88754

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=1.3e-32  Score=195.33  Aligned_cols=160  Identities=32%  Similarity=0.629  Sum_probs=140.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEE
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVY   88 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (203)
                      +||+++|++|||||||+++++.+.+...+.++.+.++....+..++..+.+.+||++|++.+...+..++..+|++|+||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF   80 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence            58999999999999999999988887778888887777777777888899999999999998888888999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHHH
Q 028792           89 DVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAAS  168 (203)
Q Consensus        89 d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~  168 (203)
                      |+++++++..+..|+..+..... +.|+++|+||+|+... ... ....++.+..+++++++||++|+|++++|++|.+.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~nK~Dl~~~-~~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~  157 (166)
T cd00877          81 DVTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGNKVDIKDR-KVK-AKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARK  157 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhcccc-cCC-HHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHH
Confidence            99999999999999999987765 7999999999998733 333 33456677777899999999999999999999988


Q ss_pred             HHH
Q 028792          169 IKN  171 (203)
Q Consensus       169 ~~~  171 (203)
                      +.+
T Consensus       158 ~~~  160 (166)
T cd00877         158 LLG  160 (166)
T ss_pred             HHh
Confidence            864

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04134 Rho3 Rho3 subfamily

Probab=100.00  E-value=2.1e-32  Score=198.15  Aligned_cols=160  Identities=34%  Similarity=0.567  Sum_probs=136.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEE
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVY   88 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (203)
                      .||+++|++|+|||||+++|..+.+...+.++....+. ..+..++..+.+.+||++|++++..++..++..+|++|+||
T Consensus         1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~   79 (189)
T cd04134           1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF   79 (189)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence            37999999999999999999999988887787765543 44556777889999999999999888888999999999999


Q ss_pred             eCCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCc------------ccCHHHHHHHHHHcC-CCEEEEecCC
Q 028792           89 DVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTANK------------VVSYETAKAFADEIG-IPFMETSAKS  154 (203)
Q Consensus        89 d~~~~~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~~~------------~~~~~~~~~~~~~~~-~~~~~~Sa~~  154 (203)
                      |++++++|..+. .|+..+.... .+.|+++|+||+|+....            .+..++..+++...+ ++++++||++
T Consensus        80 dv~~~~sf~~~~~~~~~~i~~~~-~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~  158 (189)
T cd04134          80 SVDSPDSLENVESKWLGEIREHC-PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKL  158 (189)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCc
Confidence            999999999886 5888887654 368999999999987543            245566777777777 7899999999


Q ss_pred             CCCHHHHHHHHHHHHH
Q 028792          155 ATNVEQAFMAMAASIK  170 (203)
Q Consensus       155 ~~gi~~~~~~l~~~~~  170 (203)
                      |.|++++|.+|.+.+.
T Consensus       159 ~~~v~e~f~~l~~~~~  174 (189)
T cd04134         159 NRGVNEAFTEAARVAL  174 (189)
T ss_pred             CCCHHHHHHHHHHHHh
Confidence            9999999999999886

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=100.00  E-value=1.4e-32  Score=194.65  Aligned_cols=161  Identities=40%  Similarity=0.715  Sum_probs=140.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEE
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVY   88 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (203)
                      +||+|+|++|||||||+++|.+..+...+.++.+. .....+..++..+.+.+||+||++++...+..++..+|++++||
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIED-SYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhh-hEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence            58999999999999999999998887777666653 33456667777889999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHH
Q 028792           89 DVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAA  167 (203)
Q Consensus        89 d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  167 (203)
                      |++++++++.+..|+..+..... .+.|+++++||+|+........++...+++..+++++++||++|.|++++|++|.+
T Consensus        80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~  159 (164)
T smart00173       80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVR  159 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHH
Confidence            99999999999999888765533 46899999999999876667777888888888999999999999999999999998


Q ss_pred             HHH
Q 028792          168 SIK  170 (203)
Q Consensus       168 ~~~  170 (203)
                      .+.
T Consensus       160 ~~~  162 (164)
T smart00173      160 EIR  162 (164)
T ss_pred             HHh
Confidence            765

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04116 Rab9 Rab9 subfamily

Probab=100.00  E-value=2.4e-32  Score=194.61  Aligned_cols=162  Identities=43%  Similarity=0.742  Sum_probs=143.7

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      +..++|+++|++|+|||||+++|..+.+.+.+.++.+.++....+..++..+.+.+||+||++++..++..+++.+|+++
T Consensus         3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i   82 (170)
T cd04116           3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL   82 (170)
T ss_pred             ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence            56799999999999999999999999988877788887777778888888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcC----CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC-CCEEEEecCCCCCHHH
Q 028792           86 VVYDVTDQESFNNVKQWLNEIDRYAS----ENVNKLLVGNKCDLTANKVVSYETAKAFADEIG-IPFMETSAKSATNVEQ  160 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~l~~~~~----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~  160 (203)
                      +|||+++++++..+..|+..+.....    .+.|+++++||.|+. ......+++.+++..++ .+++++||++|.|+.+
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~  161 (170)
T cd04116          83 LTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP-ERQVSTEEAQAWCRENGDYPYFETSAKDATNVAA  161 (170)
T ss_pred             EEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc-ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHHH
Confidence            99999999999999999988765432    468999999999986 45567788889988888 4899999999999999


Q ss_pred             HHHHHHHH
Q 028792          161 AFMAMAAS  168 (203)
Q Consensus       161 ~~~~l~~~  168 (203)
                      +|.++++.
T Consensus       162 ~~~~~~~~  169 (170)
T cd04116         162 AFEEAVRR  169 (170)
T ss_pred             HHHHHHhh
Confidence            99999864

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd01861 Rab6 Rab6 subfamily

Probab=100.00  E-value=1.9e-32  Score=193.37  Aligned_cols=160  Identities=41%  Similarity=0.733  Sum_probs=145.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEE
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVY   88 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (203)
                      +||+++|++|||||||+++|.+..+...+.++.+.++....+..++..+.+++||+||+..+...+..++..+|++++|+
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~   80 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence            48999999999999999999999988888888888888888888888889999999999999998999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHHH
Q 028792           89 DVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAAS  168 (203)
Q Consensus        89 d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~  168 (203)
                      |+++++++..+..|+..+......+.|+++++||+|+.+......++...+++..+++++++||+++.|++++|.+|.+.
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~  160 (161)
T cd01861          81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA  160 (161)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence            99999999999999998876655569999999999997666777788888888888999999999999999999999874

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=100.00  E-value=2.9e-32  Score=194.29  Aligned_cols=163  Identities=47%  Similarity=0.850  Sum_probs=145.8

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhc-hhhhccccCCcEEE
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR-TITSSYYRGAHGII   85 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-~~~~~~~~~~d~~i   85 (203)
                      +.++|+++|++|+|||||++++..+.++..+.++.+.++....+..++..+.+.+||++|++++. ..+..++.++|+++
T Consensus         1 r~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i   80 (170)
T cd04115           1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVV   80 (170)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEE
Confidence            36899999999999999999999988888888888878888888888888999999999998876 46788899999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCC---CCCHHHH
Q 028792           86 VVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKS---ATNVEQA  161 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~gi~~~  161 (203)
                      +|||++++.++..+..|+..+..... .+.|+++|+||+|+.....+..+...+++...+++++++||++   +.+++++
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~  160 (170)
T cd04115          81 FVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAI  160 (170)
T ss_pred             EEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHH
Confidence            99999999999999999988876543 5799999999999987777888888889998889999999999   9999999


Q ss_pred             HHHHHHHH
Q 028792          162 FMAMAASI  169 (203)
Q Consensus       162 ~~~l~~~~  169 (203)
                      |.+|.+.+
T Consensus       161 f~~l~~~~  168 (170)
T cd04115         161 FMTLAHKL  168 (170)
T ss_pred             HHHHHHHh
Confidence            99998765

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04176 Rap2 Rap2 subgroup

Probab=100.00  E-value=1.7e-32  Score=194.15  Aligned_cols=161  Identities=39%  Similarity=0.664  Sum_probs=140.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEE
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVV   87 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (203)
                      .++|+++|.+|+|||||++++..+.+.+.+.++.. +.....+..++..+.+.+||+||.+++..++..++.++|++++|
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   79 (163)
T cd04176           1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVV   79 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence            37999999999999999999999988887777664 45556777788888899999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHH
Q 028792           88 YDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMA  166 (203)
Q Consensus        88 ~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  166 (203)
                      ||+++++++.++..|+..+..... .+.|+++++||+|+.....+..++...++...+++++++||++|.|++++|.++.
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  159 (163)
T cd04176          80 YSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIV  159 (163)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence            999999999999999888876543 5799999999999876666666677788877888999999999999999999998


Q ss_pred             HHH
Q 028792          167 ASI  169 (203)
Q Consensus       167 ~~~  169 (203)
                      +.+
T Consensus       160 ~~l  162 (163)
T cd04176         160 RQM  162 (163)
T ss_pred             Hhc
Confidence            754

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd04124 RabL2 RabL2 subfamily

Probab=100.00  E-value=2.9e-32  Score=192.59  Aligned_cols=161  Identities=36%  Similarity=0.594  Sum_probs=139.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEE
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVY   88 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (203)
                      +||+++|.+|+|||||+++|..+.+.+.+.++...+.....+..++..+.+.+||++|++++...+..++.++|++++|+
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence            58999999999999999999999888877777766666667777888899999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHHH
Q 028792           89 DVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAAS  168 (203)
Q Consensus        89 d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~  168 (203)
                      |++++.++..+..|+..+..... +.|+++++||+|+...   ..++...++...+++++++||++|.|++++|+.+.+.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~-~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~  156 (161)
T cd04124          81 DVTRKITYKNLSKWYEELREYRP-EIPCIVVANKIDLDPS---VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKL  156 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEECccCchh---HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999999999998876543 6899999999998432   1234556677778999999999999999999999998


Q ss_pred             HHHHh
Q 028792          169 IKNRM  173 (203)
Q Consensus       169 ~~~~~  173 (203)
                      +.+++
T Consensus       157 ~~~~~  161 (161)
T cd04124         157 AVSYK  161 (161)
T ss_pred             HHhcC
Confidence            87653

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd01860 Rab5_related Rab5-related subfamily

Probab=100.00  E-value=4.6e-32  Score=191.79  Aligned_cols=162  Identities=51%  Similarity=0.826  Sum_probs=146.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEE
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVV   87 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (203)
                      .+||+++|++|+|||||+++|.++.+...+.++.+..+....+.+++..+.+.+||+||+.++...+..++.++|++++|
T Consensus         1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   80 (163)
T cd01860           1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence            47999999999999999999999998877778887777778888888889999999999999988888899999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHH
Q 028792           88 YDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAA  167 (203)
Q Consensus        88 ~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  167 (203)
                      +|+++++++..+..|+..+........|+++++||+|+........++...+....+++++++||++|.|++++|++|.+
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  160 (163)
T cd01860          81 YDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAK  160 (163)
T ss_pred             EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            99999999999999999887776567899999999998866667778888888888999999999999999999999988


Q ss_pred             HH
Q 028792          168 SI  169 (203)
Q Consensus       168 ~~  169 (203)
                      .+
T Consensus       161 ~l  162 (163)
T cd01860         161 KL  162 (163)
T ss_pred             Hh
Confidence            75

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd04140 ARHI_like ARHI subfamily

Probab=100.00  E-value=2.9e-32  Score=193.35  Aligned_cols=159  Identities=35%  Similarity=0.542  Sum_probs=137.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEE
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVY   88 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (203)
                      +||+++|.+|+|||||++++.++.+...+.++.+..+ ...+..++..+.+.+||+||++++..++..++..+|++++||
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   80 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence            7999999999999999999999988777777765444 344556677789999999999999888888899999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcC---CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHH
Q 028792           89 DVTDQESFNNVKQWLNEIDRYAS---ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAM  165 (203)
Q Consensus        89 d~~~~~s~~~~~~~~~~l~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  165 (203)
                      |+++++++..+..|+..+.....   .+.|+++|+||+|+...+.+..++...++...++.++++||++|+|++++|++|
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l  160 (165)
T cd04140          81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQEL  160 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Confidence            99999999999999887765432   468999999999997766677777788888888999999999999999999999


Q ss_pred             HHH
Q 028792          166 AAS  168 (203)
Q Consensus       166 ~~~  168 (203)
                      .+.
T Consensus       161 ~~~  163 (165)
T cd04140         161 LNL  163 (165)
T ss_pred             Hhc
Confidence            753

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd01871 Rac1_like Rac1-like subfamily

Probab=100.00  E-value=4.4e-32  Score=193.88  Aligned_cols=158  Identities=30%  Similarity=0.587  Sum_probs=136.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEE
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVY   88 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (203)
                      +||+++|.+|||||||+.++..+.+...+.++... .....+..++..+.+.+||++|++.+...+..++.++|++|+||
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF   80 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCccee-eeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence            79999999999999999999999988888888753 33445667888899999999999999999999999999999999


Q ss_pred             eCCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHcC-CCEEEEecCC
Q 028792           89 DVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTAN------------KVVSYETAKAFADEIG-IPFMETSAKS  154 (203)
Q Consensus        89 d~~~~~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~  154 (203)
                      |++++++|..+. .|+..+.... .+.|+++|+||.|+.+.            ..+..++..+++..++ +++++|||++
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  159 (174)
T cd01871          81 SLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT  159 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccc
Confidence            999999999986 5888776554 47999999999998643            2467788889999888 4999999999


Q ss_pred             CCCHHHHHHHHHHH
Q 028792          155 ATNVEQAFMAMAAS  168 (203)
Q Consensus       155 ~~gi~~~~~~l~~~  168 (203)
                      |+|++++|+.+.+.
T Consensus       160 ~~~i~~~f~~l~~~  173 (174)
T cd01871         160 QKGLKTVFDEAIRA  173 (174)
T ss_pred             cCCHHHHHHHHHHh
Confidence            99999999999763

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=100.00  E-value=6.5e-32  Score=190.57  Aligned_cols=160  Identities=36%  Similarity=0.683  Sum_probs=137.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEE
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVV   87 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (203)
                      .+||+++|++|+|||||+++|.++.+...+.++.+..+ ...+..++..+.+.+||++|++++..++..++..+|++++|
T Consensus         1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v   79 (162)
T cd04138           1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   79 (162)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEE
Confidence            37999999999999999999999888777777765443 45556777778899999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHH
Q 028792           88 YDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMA  166 (203)
Q Consensus        88 ~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  166 (203)
                      ||++++.++..+..|+..+..... .+.|+++|+||+|+.+ ......+..+++...+++++++||++|.|++++|++|.
T Consensus        80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  158 (162)
T cd04138          80 FAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLV  158 (162)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHH
Confidence            999999999999988888876543 4789999999999865 34556777788888889999999999999999999998


Q ss_pred             HHH
Q 028792          167 ASI  169 (203)
Q Consensus       167 ~~~  169 (203)
                      +.+
T Consensus       159 ~~~  161 (162)
T cd04138         159 REI  161 (162)
T ss_pred             HHh
Confidence            754

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd04142 RRP22 RRP22 subfamily

Probab=100.00  E-value=6.5e-32  Score=196.46  Aligned_cols=167  Identities=23%  Similarity=0.341  Sum_probs=138.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhc--------hhhhccccC
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR--------TITSSYYRG   80 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--------~~~~~~~~~   80 (203)
                      +||+|+|.+|||||||+++|.++.++..+.|+.+.++....+..++..+.+++||+||...+.        ......+..
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~   80 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN   80 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence            589999999999999999999999888888887766666667788888999999999965331        112345789


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHhhc---CCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-HcCCCEEEEecCCCC
Q 028792           81 AHGIIVVYDVTDQESFNNVKQWLNEIDRYA---SENVNKLLVGNKCDLTANKVVSYETAKAFAD-EIGIPFMETSAKSAT  156 (203)
Q Consensus        81 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~  156 (203)
                      +|++|+|||++++++++.+..|+..+....   ..+.|+++|+||+|+...+....++..+++. .++++++++||++|.
T Consensus        81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~  160 (198)
T cd04142          81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNW  160 (198)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCC
Confidence            999999999999999999999998887654   3579999999999997766666666767654 567999999999999


Q ss_pred             CHHHHHHHHHHHHHHHhcc
Q 028792          157 NVEQAFMAMAASIKNRMAS  175 (203)
Q Consensus       157 gi~~~~~~l~~~~~~~~~~  175 (203)
                      |++++|..+.+.+..+...
T Consensus       161 ~v~~lf~~i~~~~~~~~~~  179 (198)
T cd04142         161 HILLLFKELLISATTRGRS  179 (198)
T ss_pred             CHHHHHHHHHHHhhccCCC
Confidence            9999999999888755443

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=100.00  E-value=9.4e-32  Score=190.32  Aligned_cols=161  Identities=37%  Similarity=0.636  Sum_probs=139.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEE
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVV   87 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (203)
                      .+||+++|++|+|||||++++++..+...+.++....+ ......++..+.+.+||+||+.++..++..++..+|++++|
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   80 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV   80 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence            48999999999999999999998887766666665333 44556778788999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHH
Q 028792           88 YDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMA  166 (203)
Q Consensus        88 ~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  166 (203)
                      ||++++.++..+..|+..+.... ..+.|+++++||+|+........++..++++..+++++++||++|.|++++|++|.
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  160 (164)
T cd04145          81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLV  160 (164)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHH
Confidence            99999999999999998886653 34789999999999987666777778888888889999999999999999999998


Q ss_pred             HHH
Q 028792          167 ASI  169 (203)
Q Consensus       167 ~~~  169 (203)
                      +.+
T Consensus       161 ~~~  163 (164)
T cd04145         161 RVI  163 (164)
T ss_pred             Hhh
Confidence            764

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd04123 Rab21 Rab21 subfamily

Probab=100.00  E-value=1.7e-31  Score=188.50  Aligned_cols=161  Identities=42%  Similarity=0.765  Sum_probs=143.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEE
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVY   88 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (203)
                      +||+++|++|+|||||+++|.+..+.+.+.++....+....+...+..+.+++||+||+..+...+..++..+|++++|+
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence            58999999999999999999998887766667666666677777777789999999999999888888999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHHH
Q 028792           89 DVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAAS  168 (203)
Q Consensus        89 d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~  168 (203)
                      |+++++++..+..|+..+......+.|+++++||+|+.....+..++..+++...+.+++++|+++++|++++|++|.+.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~  160 (162)
T cd04123          81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKR  160 (162)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999999999998887766678999999999998766677788888888889999999999999999999999876


Q ss_pred             H
Q 028792          169 I  169 (203)
Q Consensus       169 ~  169 (203)
                      +
T Consensus       161 ~  161 (162)
T cd04123         161 M  161 (162)
T ss_pred             h
Confidence            5

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd01862 Rab7 Rab7 subfamily

Probab=100.00  E-value=3.8e-31  Score=188.63  Aligned_cols=165  Identities=43%  Similarity=0.737  Sum_probs=144.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEE
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVY   88 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (203)
                      +||+++|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||+..+...+..+++++|++|+||
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   80 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence            58999999999999999999999888777778777777777888888899999999999999889999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcC----CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC-CCEEEEecCCCCCHHHHHH
Q 028792           89 DVTDQESFNNVKQWLNEIDRYAS----ENVNKLLVGNKCDLTANKVVSYETAKAFADEIG-IPFMETSAKSATNVEQAFM  163 (203)
Q Consensus        89 d~~~~~s~~~~~~~~~~l~~~~~----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~~~~  163 (203)
                      |+++++++..+..|...+.....    .+.|+++|+||+|+........++...+.+..+ .+++++|+++|.|++++|+
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  160 (172)
T cd01862          81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFE  160 (172)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHH
Confidence            99999999888888877644432    368999999999998656667778888888887 7999999999999999999


Q ss_pred             HHHHHHHHHh
Q 028792          164 AMAASIKNRM  173 (203)
Q Consensus       164 ~l~~~~~~~~  173 (203)
                      ++.+.+.+..
T Consensus       161 ~i~~~~~~~~  170 (172)
T cd01862         161 TIARKALEQE  170 (172)
T ss_pred             HHHHHHHhcc
Confidence            9999887653

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=100.00  E-value=2.4e-31  Score=188.32  Aligned_cols=160  Identities=33%  Similarity=0.612  Sum_probs=138.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC--CCCCCCccccceeeEEEEEEEC-CeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADD--SYLESYISTIGVDFKIRTVEQD-GKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      +||+++|++|||||||+++|..+  .++..+.++.+.++....+..+ +..+.+.+||+||...+..++..++.++|+++
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence            58999999999999999999864  6777777888777766666554 56789999999999998888899999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHH
Q 028792           86 VVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAM  165 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  165 (203)
                      +|+|+++++++..+..|+..+.... .+.|+++|+||.|+.+...+.......+....+++++++||++|.|++++|.+|
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  159 (164)
T cd04101          81 LVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESL  159 (164)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHH
Confidence            9999999999999999998887664 468999999999997766667666677777788899999999999999999999


Q ss_pred             HHHH
Q 028792          166 AASI  169 (203)
Q Consensus       166 ~~~~  169 (203)
                      .+.+
T Consensus       160 ~~~~  163 (164)
T cd04101         160 ARAF  163 (164)
T ss_pred             HHHh
Confidence            8865

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=3e-31  Score=192.79  Aligned_cols=156  Identities=29%  Similarity=0.586  Sum_probs=138.8

Q ss_pred             EcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCCh
Q 028792           14 IGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQ   93 (203)
Q Consensus        14 ~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~   93 (203)
                      +|.+|||||||+++++.+.+...+.+|++.++....+..++..+.+.+||++|++++..++..++..+|++|+|||++++
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~   80 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR   80 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence            69999999999999999888888888988888888888888889999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 028792           94 ESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR  172 (203)
Q Consensus        94 ~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~  172 (203)
                      .++..+..|+..+..... +.|+++|+||+|+.. +.+..+. ..++...++.+++|||++|.|+.++|.+|.+.+.+.
T Consensus        81 ~S~~~i~~w~~~i~~~~~-~~piilvgNK~Dl~~-~~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~  156 (200)
T smart00176       81 VTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDVKD-RKVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD  156 (200)
T ss_pred             HHHHHHHHHHHHHHHhCC-CCCEEEEEECccccc-ccCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence            999999999999987653 799999999999854 3344443 467778889999999999999999999999988764

Ran is involved in the active transport of proteins through nuclear pores.

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.9e-33  Score=188.58  Aligned_cols=175  Identities=43%  Similarity=0.806  Sum_probs=159.3

Q ss_pred             CCCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEEC---------CeEEEEEEEeCCChhhhchh
Q 028792            3 NEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQD---------GKTIKLQIWDTAGQERFRTI   73 (203)
Q Consensus         3 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~i~D~~g~~~~~~~   73 (203)
                      ++++|.++.+.+|++|+||||++.++..+++.+...+|++.++..+.+.++         +..+.+++|||.|+++++++
T Consensus         4 GdydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSL   83 (219)
T KOG0081|consen    4 GDYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSL   83 (219)
T ss_pred             ccHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHH
Confidence            478899999999999999999999999999999999999999988877653         23578999999999999999


Q ss_pred             hhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEec
Q 028792           74 TSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSA  152 (203)
Q Consensus        74 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  152 (203)
                      ...|++++=+++++||+++.++|.+++.|+..+....- ++.-+++++||+|+.+.+.++.+.+.+++.++++|||++||
T Consensus        84 TTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA  163 (219)
T KOG0081|consen   84 TTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSA  163 (219)
T ss_pred             HHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeecc
Confidence            99999999999999999999999999999999866544 35668889999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHhccCC
Q 028792          153 KSATNVEQAFMAMAASIKNRMASQP  177 (203)
Q Consensus       153 ~~~~gi~~~~~~l~~~~~~~~~~~~  177 (203)
                      -+|.++++..+.|...++++.++-.
T Consensus       164 ~tg~Nv~kave~LldlvM~Rie~~v  188 (219)
T KOG0081|consen  164 CTGTNVEKAVELLLDLVMKRIEQCV  188 (219)
T ss_pred             ccCcCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999998876643

>cd04143 Rhes_like Rhes_like subfamily

Probab=100.00  E-value=3.1e-31  Score=198.55  Aligned_cols=162  Identities=25%  Similarity=0.423  Sum_probs=139.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEE
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVY   88 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (203)
                      ++|+++|.+|+|||||+++|+.+.+...+.+|++ ++....+.+++..+.+.|||++|+..+..++..++..+|++|+||
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf   79 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF   79 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence            5899999999999999999999888877777775 555667778888899999999999988888888889999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhh---------cCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH-cCCCEEEEecCCCCCH
Q 028792           89 DVTDQESFNNVKQWLNEIDRY---------ASENVNKLLVGNKCDLTANKVVSYETAKAFADE-IGIPFMETSAKSATNV  158 (203)
Q Consensus        89 d~~~~~s~~~~~~~~~~l~~~---------~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gi  158 (203)
                      |++++++|+.+..|+..+...         ...+.|+++++||+|+.....+..+++.+++.. .++.++++||++|.|+
T Consensus        80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI  159 (247)
T cd04143          80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNL  159 (247)
T ss_pred             eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCH
Confidence            999999999999998888654         124689999999999976666777888777664 3578999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 028792          159 EQAFMAMAASIKN  171 (203)
Q Consensus       159 ~~~~~~l~~~~~~  171 (203)
                      +++|.+|.....-
T Consensus       160 ~elf~~L~~~~~~  172 (247)
T cd04143         160 DEMFRALFSLAKL  172 (247)
T ss_pred             HHHHHHHHHHhcc
Confidence            9999999986543

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd04114 Rab30 Rab30 subfamily

Probab=100.00  E-value=9.7e-31  Score=186.09  Aligned_cols=165  Identities=52%  Similarity=0.894  Sum_probs=145.1

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEE
Q 028792            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI   84 (203)
Q Consensus         5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (203)
                      ..+.++|+++|++|+|||||+++|..+.+.+.+.++.+.++....+.+++..+.+.+||+||+..+...+..++..+|++
T Consensus         4 ~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~   83 (169)
T cd04114           4 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANAL   83 (169)
T ss_pred             CCceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence            35679999999999999999999998887777777777777777888888888999999999998888888899999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHH
Q 028792           85 IVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMA  164 (203)
Q Consensus        85 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  164 (203)
                      ++|+|+++++++..+..|+..+......+.|+++++||.|+.+...+..+....+......+++++||++|.|++++|++
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~  163 (169)
T cd04114          84 ILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLD  163 (169)
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHH
Confidence            99999999999999999998887776667999999999999776666666667777777789999999999999999999


Q ss_pred             HHHHH
Q 028792          165 MAASI  169 (203)
Q Consensus       165 l~~~~  169 (203)
                      |.+.+
T Consensus       164 i~~~~  168 (169)
T cd04114         164 LACRL  168 (169)
T ss_pred             HHHHh
Confidence            98764

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4e-31  Score=174.37  Aligned_cols=174  Identities=47%  Similarity=0.869  Sum_probs=163.7

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcE
Q 028792            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG   83 (203)
Q Consensus         4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   83 (203)
                      +..+.++-+++|+-|+|||.|+..+...++...-..+++.++....+.+.+..++++|||+.|+++++...+.+++.+.+
T Consensus         7 nysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaag   86 (215)
T KOG0097|consen    7 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG   86 (215)
T ss_pred             chhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccc
Confidence            56788999999999999999999999999988888999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHH
Q 028792           84 IIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFM  163 (203)
Q Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  163 (203)
                      .+.|||++.+.++..+..|+...+....++..+++++||.|+...+.+..++..+|++..+..++++||++|+++++.|-
T Consensus        87 almvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nvedafl  166 (215)
T KOG0097|consen   87 ALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFL  166 (215)
T ss_pred             eeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHH
Confidence            99999999999999999999999888888888899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhccCC
Q 028792          164 AMAASIKNRMASQP  177 (203)
Q Consensus       164 ~l~~~~~~~~~~~~  177 (203)
                      ...+.+.+.....+
T Consensus       167 e~akkiyqniqdgs  180 (215)
T KOG0097|consen  167 ETAKKIYQNIQDGS  180 (215)
T ss_pred             HHHHHHHHhhhcCc
Confidence            99998887665544

>cd01863 Rab18 Rab18 subfamily

Probab=100.00  E-value=7.5e-31  Score=185.24  Aligned_cols=159  Identities=55%  Similarity=0.930  Sum_probs=140.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEE
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVY   88 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (203)
                      +||+++|++|+|||||+++|.+..+.....++.+.++....+..++..+.+.+||+||+..+...+..+++.+|++++|+
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence            58999999999999999999998887777788877777777777887889999999999998888889999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHH
Q 028792           89 DVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAA  167 (203)
Q Consensus        89 d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  167 (203)
                      |+++++++..+..|+..+..... .+.|+++++||+|+.. .....++..+++...+++++++||++|.|++++++++.+
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~  159 (161)
T cd01863          81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKEN-REVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVE  159 (161)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccc-cccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHH
Confidence            99999999999999988876643 5789999999999863 345567788888888999999999999999999999987


Q ss_pred             H
Q 028792          168 S  168 (203)
Q Consensus       168 ~  168 (203)
                      .
T Consensus       160 ~  160 (161)
T cd01863         160 K  160 (161)
T ss_pred             h
Confidence            5

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd04148 RGK RGK subfamily

Probab=100.00  E-value=6.7e-31  Score=194.34  Aligned_cols=167  Identities=31%  Similarity=0.430  Sum_probs=140.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCC-CCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhcccc-CCcEEEE
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDSYL-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYR-GAHGIIV   86 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~-~~d~~i~   86 (203)
                      +||+++|++|+|||||+++|..+.+. ..+.++.+.++....+.+++....+.+||+||++.  .....++. .+|++++
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil   78 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV   78 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence            58999999999999999999987776 55666665567777788888889999999999872  22344556 8999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHH
Q 028792           87 VYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAM  165 (203)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  165 (203)
                      |||++++.+|..+..|+..+..... .+.|+++|+||+|+.+.+.+..++..+++...+++++++||++|.|++++|++|
T Consensus        79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l  158 (221)
T cd04148          79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGI  158 (221)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence            9999999999999999988876543 479999999999998777777787888888889999999999999999999999


Q ss_pred             HHHHHHHhccCC
Q 028792          166 AASIKNRMASQP  177 (203)
Q Consensus       166 ~~~~~~~~~~~~  177 (203)
                      .+.+.......+
T Consensus       159 ~~~~~~~~~~~~  170 (221)
T cd04148         159 VRQIRLRRDSKE  170 (221)
T ss_pred             HHHHHhhhcccc
Confidence            998876554433

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=100.00  E-value=3.5e-31  Score=189.30  Aligned_cols=159  Identities=35%  Similarity=0.678  Sum_probs=136.5

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEEeC
Q 028792           11 LLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDV   90 (203)
Q Consensus        11 i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~   90 (203)
                      |+|+|++|+|||||+++|..+.+...+.++....+ ...+..++..+.+.+||+||++.+..++..++..+|++++|||+
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~   79 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY-SADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV   79 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee-eEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence            58999999999999999999998877777765443 34566788888999999999999998899999999999999999


Q ss_pred             CChhhHHHHHH-HHHHHHhhcCCCCcEEEEEeCCCCCCCc------------ccCHHHHHHHHHHcCC-CEEEEecCCCC
Q 028792           91 TDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDLTANK------------VVSYETAKAFADEIGI-PFMETSAKSAT  156 (203)
Q Consensus        91 ~~~~s~~~~~~-~~~~l~~~~~~~~p~iiv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~  156 (203)
                      +++++|+.+.. |+..+..... +.|+++|+||+|+....            .+..++..++++..+. .++++||++|.
T Consensus        80 ~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~  158 (174)
T smart00174       80 DSPASFENVKEKWYPEVKHFCP-NTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE  158 (174)
T ss_pred             CCHHHHHHHHHHHHHHHHhhCC-CCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence            99999999864 8888876543 79999999999986532            2667778889999886 89999999999


Q ss_pred             CHHHHHHHHHHHHHH
Q 028792          157 NVEQAFMAMAASIKN  171 (203)
Q Consensus       157 gi~~~~~~l~~~~~~  171 (203)
                      |++++|..|.+.+.+
T Consensus       159 ~v~~lf~~l~~~~~~  173 (174)
T smart00174      159 GVREVFEEAIRAALN  173 (174)
T ss_pred             CHHHHHHHHHHHhcC
Confidence            999999999987753

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd00154 Rab Rab family

Probab=100.00  E-value=6.3e-31  Score=184.53  Aligned_cols=158  Identities=63%  Similarity=1.021  Sum_probs=144.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEE
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVY   88 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (203)
                      +||+++|++++|||||+++|.+..+...+.++.+.++....+..++....+.+||+||+..+...+..++.++|++++|+
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~   80 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY   80 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence            58999999999999999999999988887888888888888888888899999999999999889999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHH
Q 028792           89 DVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMA  166 (203)
Q Consensus        89 d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  166 (203)
                      |+++++++..+..|+..+........|+++++||+|+........++...++...+.+++++|++++.|++++|.+|.
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~  158 (159)
T cd00154          81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA  158 (159)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence            999999999999999988887656799999999999975566778888889988899999999999999999999986

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04177 RSR1 RSR1 subgroup

Probab=100.00  E-value=8e-31  Score=186.47  Aligned_cols=161  Identities=37%  Similarity=0.656  Sum_probs=140.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEE
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVY   88 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (203)
                      ++|+++|.+|+|||||+++|.++.+...+.++.+.. ....+..++..+.+.+||+||+.++..++..++..++++++||
T Consensus         2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~   80 (168)
T cd04177           2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDS-YRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY   80 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchhe-EEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence            789999999999999999999888877777776543 3466667788889999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC-CCEEEEecCCCCCHHHHHHHHH
Q 028792           89 DVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSYETAKAFADEIG-IPFMETSAKSATNVEQAFMAMA  166 (203)
Q Consensus        89 d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~~~~~l~  166 (203)
                      |++++++++.+..|...+.... ..+.|+++++||.|+...+....++...+++.++ ++++++||++|.|++++|.++.
T Consensus        81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i~  160 (168)
T cd04177          81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLV  160 (168)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHHH
Confidence            9999999999999988886543 3479999999999997777777777788888887 8999999999999999999998


Q ss_pred             HHHH
Q 028792          167 ASIK  170 (203)
Q Consensus       167 ~~~~  170 (203)
                      ..+.
T Consensus       161 ~~~~  164 (168)
T cd04177         161 RQII  164 (168)
T ss_pred             HHHh
Confidence            7654

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.98  E-value=8.4e-31  Score=190.03  Aligned_cols=158  Identities=29%  Similarity=0.490  Sum_probs=128.0

Q ss_pred             eeEEEEEcCCCCcHHHHHH-HHhcCC-----CCCCCccccce-eeEEEE--------EEECCeEEEEEEEeCCChhhhch
Q 028792            8 LFKLLLIGDSGVGKSCLLL-RFADDS-----YLESYISTIGV-DFKIRT--------VEQDGKTIKLQIWDTAGQERFRT   72 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~-~l~~~~-----~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~i~D~~g~~~~~~   72 (203)
                      .+||+++|.+|+|||||+. ++.++.     +...+.||++. +.+...        ...++..+.+.+|||+|+++  .
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~   79 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K   79 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence            4799999999999999996 555433     34556677642 222211        24678889999999999875  2


Q ss_pred             hhhccccCCcEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCC-------------------CcccC
Q 028792           73 ITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTA-------------------NKVVS  132 (203)
Q Consensus        73 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~-------------------~~~~~  132 (203)
                      ....++.++|++|+|||++++++|+.+. .|+..+..... +.|+++|+||+|+..                   .+.+.
T Consensus        80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~-~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~  158 (195)
T cd01873          80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCP-RVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILP  158 (195)
T ss_pred             hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCC-CCCEEEEEEchhccccccchhhhcccccccccccCCccC
Confidence            4556789999999999999999999997 58888876553 689999999999864                   35778


Q ss_pred             HHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHHH
Q 028792          133 YETAKAFADEIGIPFMETSAKSATNVEQAFMAMAAS  168 (203)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~  168 (203)
                      .+++.++++.++++|++|||++|.|++++|..+++.
T Consensus       159 ~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         159 PETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             HHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence            899999999999999999999999999999999864

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.98  E-value=4.7e-31  Score=187.08  Aligned_cols=160  Identities=33%  Similarity=0.549  Sum_probs=134.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhh-chhhhccccCCcEEEEEE
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF-RTITSSYYRGAHGIIVVY   88 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-~~~~~~~~~~~d~~i~v~   88 (203)
                      +|+++|++|+|||||+++++.+.+...+.++....+ ...+..++..+.+.+||+||+..+ ......++..+|++++|+
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~   79 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY   79 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence            589999999999999999998887766666654333 455667888889999999998752 345667889999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhc--CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCC-CCHHHHHHHH
Q 028792           89 DVTDQESFNNVKQWLNEIDRYA--SENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSA-TNVEQAFMAM  165 (203)
Q Consensus        89 d~~~~~s~~~~~~~~~~l~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~-~gi~~~~~~l  165 (203)
                      |++++++++.+..|+..+....  ..+.|+++|+||+|+...+.+..++...++...+++++++||++| .|++++|.+|
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l  159 (165)
T cd04146          80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHEL  159 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHH
Confidence            9999999999999988887654  346999999999998776677788888899888999999999999 4999999999


Q ss_pred             HHHHH
Q 028792          166 AASIK  170 (203)
Q Consensus       166 ~~~~~  170 (203)
                      .+.+.
T Consensus       160 ~~~~~  164 (165)
T cd04146         160 CREVR  164 (165)
T ss_pred             HHHHh
Confidence            98664

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.98  E-value=9.2e-31  Score=184.16  Aligned_cols=153  Identities=25%  Similarity=0.435  Sum_probs=128.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEE
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVY   88 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (203)
                      +||+++|++|+|||||++++..+.+.+.+.++ ...+ ...+.+++..+.+.+||++|++.     ..++.++|++++||
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~   73 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF   73 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence            58999999999999999999988877665444 2233 46677888888999999999864     24567899999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCC--CCcccCHHHHHHHHHHc-CCCEEEEecCCCCCHHHHHHH
Q 028792           89 DVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLT--ANKVVSYETAKAFADEI-GIPFMETSAKSATNVEQAFMA  164 (203)
Q Consensus        89 d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~--~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~~~~~  164 (203)
                      |++++++|..+..|+..+..... .+.|+++|+||.|+.  ..+.+..++..++++.. ++.+++|||++|.|++++|.+
T Consensus        74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~  153 (158)
T cd04103          74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQE  153 (158)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHH
Confidence            99999999999999999877653 568999999999985  34677778888888776 489999999999999999999


Q ss_pred             HHHH
Q 028792          165 MAAS  168 (203)
Q Consensus       165 l~~~  168 (203)
                      +.+.
T Consensus       154 ~~~~  157 (158)
T cd04103         154 AAQK  157 (158)
T ss_pred             HHhh
Confidence            9754

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd01892 Miro2 Miro2 subfamily

Probab=99.98  E-value=6.4e-31  Score=187.11  Aligned_cols=162  Identities=23%  Similarity=0.343  Sum_probs=138.4

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCC-CCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFADDSYL-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      ..+||+++|.+|+|||||+++|.++.+. ..+.+|.+..+....+..++..+.+.+||++|+..+..++..++.++|+++
T Consensus         3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~l   82 (169)
T cd01892           3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVAC   82 (169)
T ss_pred             eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEEE
Confidence            5799999999999999999999999988 778888887777777778888888999999999988888888899999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-CEEEEecCCCCCHHHHHHH
Q 028792           86 VVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGI-PFMETSAKSATNVEQAFMA  164 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~~~~  164 (203)
                      +|+|++++++++.+..|+..+...  .+.|+++|+||.|+.+.......+..++++.+++ .++++||++|.|++++|..
T Consensus        83 lv~d~~~~~s~~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~  160 (169)
T cd01892          83 LVYDSSDPKSFSYCAEVYKKYFML--GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFTK  160 (169)
T ss_pred             EEEeCCCHHHHHHHHHHHHHhccC--CCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHHH
Confidence            999999999999888888765322  3689999999999865544434455677777776 4799999999999999999


Q ss_pred             HHHHHH
Q 028792          165 MAASIK  170 (203)
Q Consensus       165 l~~~~~  170 (203)
                      |.+.+.
T Consensus       161 l~~~~~  166 (169)
T cd01892         161 LATAAQ  166 (169)
T ss_pred             HHHHhh
Confidence            998765

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.98  E-value=2.2e-30  Score=185.03  Aligned_cols=157  Identities=32%  Similarity=0.580  Sum_probs=134.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEE
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVY   88 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (203)
                      +|++++|++|+|||||++++..+.+...+.++. .+.....+..++..+.+.+||+||+.++...+..++.++|++++||
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~   79 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF   79 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence            689999999999999999999888887777765 3444456777888899999999999999999989999999999999


Q ss_pred             eCCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCC------------CcccCHHHHHHHHHHcCC-CEEEEecCC
Q 028792           89 DVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTA------------NKVVSYETAKAFADEIGI-PFMETSAKS  154 (203)
Q Consensus        89 d~~~~~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~  154 (203)
                      |++++++|+.+. .|+..+.... .+.|+++++||.|+..            .+.+..+++..++...+. .++++||++
T Consensus        80 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~  158 (173)
T cd04130          80 SVVNPSSFQNISEKWIPEIRKHN-PKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT  158 (173)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence            999999999885 5887776543 3689999999999864            245667788899998887 899999999


Q ss_pred             CCCHHHHHHHHHH
Q 028792          155 ATNVEQAFMAMAA  167 (203)
Q Consensus       155 ~~gi~~~~~~l~~  167 (203)
                      |.|++++|+.++-
T Consensus       159 ~~~v~~lf~~~~~  171 (173)
T cd04130         159 QKNLKEVFDTAIL  171 (173)
T ss_pred             CCCHHHHHHHHHh
Confidence            9999999998763

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.98  E-value=4.4e-30  Score=181.65  Aligned_cols=162  Identities=41%  Similarity=0.683  Sum_probs=139.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEE
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVY   88 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (203)
                      +||+++|++|+|||||+++|....+...+.++... ........++..+.+.+||+||+.++...+..++..+|++++|+
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKAD-SYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchh-hEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence            58999999999999999999998887776666543 33455667878899999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHH
Q 028792           89 DVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAA  167 (203)
Q Consensus        89 d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  167 (203)
                      |++++.++..+..|+..+..... .+.|+++|+||+|+........++...+...++++++++||++|.|++++|.+|.+
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  159 (164)
T cd04139          80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVR  159 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHH
Confidence            99999999999999888877643 47999999999999765555667777788888899999999999999999999998


Q ss_pred             HHHH
Q 028792          168 SIKN  171 (203)
Q Consensus       168 ~~~~  171 (203)
                      .+.+
T Consensus       160 ~~~~  163 (164)
T cd04139         160 EIRQ  163 (164)
T ss_pred             HHHh
Confidence            7753

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd04135 Tc10 TC10 subfamily

Probab=99.98  E-value=3.4e-30  Score=184.13  Aligned_cols=159  Identities=34%  Similarity=0.600  Sum_probs=134.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEE
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVY   88 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (203)
                      +||+++|++|+|||||+++|..+.+...+.++... .....+..++..+.+.+||+||++.+...+..++..+|++++|+
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   79 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFD-HYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF   79 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceee-eeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence            58999999999999999999998887776666543 33445667888888999999999999988999999999999999


Q ss_pred             eCCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHcCC-CEEEEecCC
Q 028792           89 DVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTAN------------KVVSYETAKAFADEIGI-PFMETSAKS  154 (203)
Q Consensus        89 d~~~~~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~  154 (203)
                      |++++++|..+. .|+..+... ..+.|+++++||+|+.+.            ..+..+++..+++..+. +++++||++
T Consensus        80 ~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  158 (174)
T cd04135          80 SVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALT  158 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCc
Confidence            999999999986 477777655 457999999999998543            24566778888888885 799999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 028792          155 ATNVEQAFMAMAASI  169 (203)
Q Consensus       155 ~~gi~~~~~~l~~~~  169 (203)
                      |.|++++|+.++..+
T Consensus       159 ~~gi~~~f~~~~~~~  173 (174)
T cd04135         159 QKGLKTVFDEAILAI  173 (174)
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999998865

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd00876 Ras Ras family

Probab=99.97  E-value=7.7e-30  Score=179.61  Aligned_cols=158  Identities=42%  Similarity=0.704  Sum_probs=139.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEEe
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYD   89 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   89 (203)
                      ||+++|++|||||||+++|++..+...+.++.. +.....+..++..+.+.+||+||...+...+..++..+|++++|+|
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   79 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS   79 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence            689999999999999999998877777666665 5555666677777899999999999988888899999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHHH
Q 028792           90 VTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAAS  168 (203)
Q Consensus        90 ~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~  168 (203)
                      +++++++.++..|+..+..... ...|+++++||+|+........+.+.+++..++++++++|++++.|++++|++|.+.
T Consensus        80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~  159 (160)
T cd00876          80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE  159 (160)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence            9999999999999888877655 579999999999998766777888889999888999999999999999999999875

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.97  E-value=1.3e-29  Score=184.80  Aligned_cols=161  Identities=29%  Similarity=0.454  Sum_probs=133.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEEe
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYD   89 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   89 (203)
                      ||+++|.+|+|||||+++|+...+...+.++.. +.....+.+.+..+.+++||+||+..+..++..++..+|++++|||
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d   79 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA   79 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence            689999999999999999999888776666654 3455567777877899999999999988888889999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCC-CcccCHHHHHHHHH-HcCCCEEEEecCCCCCHHHHHHHHH
Q 028792           90 VTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTA-NKVVSYETAKAFAD-EIGIPFMETSAKSATNVEQAFMAMA  166 (203)
Q Consensus        90 ~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~-~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~~~~~l~  166 (203)
                      ++++.+++.+..|+..+..... .+.|+++|+||+|+.. ...+..+...+... ..+++++++||++|.|++++|++|.
T Consensus        80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~  159 (198)
T cd04147          80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELL  159 (198)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHH
Confidence            9999999999999888776644 4799999999999865 34444444444433 4467899999999999999999999


Q ss_pred             HHHHH
Q 028792          167 ASIKN  171 (203)
Q Consensus       167 ~~~~~  171 (203)
                      +.+..
T Consensus       160 ~~~~~  164 (198)
T cd04147         160 RQANL  164 (198)
T ss_pred             HHhhc
Confidence            97763

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.97  E-value=3.3e-29  Score=180.07  Aligned_cols=165  Identities=37%  Similarity=0.585  Sum_probs=140.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEE
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVY   88 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (203)
                      .||+++|.+|+|||||+++|....+...+.++....+ ...+..++..+.+.+||+||+.++...+..++..++++++||
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY   80 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence            5899999999999999999998887766666654433 455566777788999999999999888889999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHH
Q 028792           89 DVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAA  167 (203)
Q Consensus        89 d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  167 (203)
                      |+++..++..+..|+..+.... ..+.|+++++||+|+...+....++...++...+++++++||+++.|+.++|.+|.+
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~  160 (180)
T cd04137          81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIE  160 (180)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            9999999999999887776543 356899999999999766666667777788888899999999999999999999999


Q ss_pred             HHHHHhc
Q 028792          168 SIKNRMA  174 (203)
Q Consensus       168 ~~~~~~~  174 (203)
                      .+.....
T Consensus       161 ~~~~~~~  167 (180)
T cd04137         161 EIEKVEN  167 (180)
T ss_pred             HHHHhcC
Confidence            8875543

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd04129 Rho2 Rho2 subfamily

Probab=99.97  E-value=3.2e-29  Score=181.15  Aligned_cols=162  Identities=35%  Similarity=0.592  Sum_probs=133.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEE
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVY   88 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (203)
                      .||+|+|++|+|||||+++|..+.+.+.+.++....+. ..+..++..+.+.+||++|+..+.......+..+|+++++|
T Consensus         2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~   80 (187)
T cd04129           2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYV-TDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF   80 (187)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEE-EEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence            58999999999999999999987777766666544433 35566777788999999999888777767789999999999


Q ss_pred             eCCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCC----------CcccCHHHHHHHHHHcCC-CEEEEecCCCC
Q 028792           89 DVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTA----------NKVVSYETAKAFADEIGI-PFMETSAKSAT  156 (203)
Q Consensus        89 d~~~~~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~----------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~  156 (203)
                      |+++++++..+. .|+..+..... +.|+++|+||+|+..          ...+..++...+++..+. ++++|||++|.
T Consensus        81 ~i~~~~s~~~~~~~~~~~i~~~~~-~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~  159 (187)
T cd04129          81 AVDTPDSLENVRTKWIEEVRRYCP-NVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGE  159 (187)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCC
Confidence            999999999987 48888876544 599999999999854          234455677888888885 89999999999


Q ss_pred             CHHHHHHHHHHHHHHH
Q 028792          157 NVEQAFMAMAASIKNR  172 (203)
Q Consensus       157 gi~~~~~~l~~~~~~~  172 (203)
                      |++++|+++.+.+...
T Consensus       160 ~v~~~f~~l~~~~~~~  175 (187)
T cd04129         160 GVDDVFEAATRAALLV  175 (187)
T ss_pred             CHHHHHHHHHHHHhcc
Confidence            9999999999877533

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=99.97  E-value=1.8e-31  Score=174.17  Aligned_cols=188  Identities=44%  Similarity=0.848  Sum_probs=162.9

Q ss_pred             EEcCCCCcHHHHHHHHhcCCCC-CCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEEeCC
Q 028792           13 LIGDSGVGKSCLLLRFADDSYL-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVT   91 (203)
Q Consensus        13 i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~   91 (203)
                      ++|.+++|||.|+-++..+.+. .+..+|++.++..+.+..++..+++++||+.|++++++....+++++|+++++||+.
T Consensus         2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydia   81 (192)
T KOG0083|consen    2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIA   81 (192)
T ss_pred             ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecc
Confidence            6899999999999888766554 456789999999999999999999999999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHHHHHH
Q 028792           92 DQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKN  171 (203)
Q Consensus        92 ~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~  171 (203)
                      +..||++.+.|+.++..+..+...+.+++||+|+..++.+..++.+.+++.+++|++++||++|.+++-.|..|.+.+.+
T Consensus        82 nkasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~k  161 (192)
T KOG0083|consen   82 NKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELKK  161 (192)
T ss_pred             cchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHHH
Confidence            99999999999999999988888999999999998888999999999999999999999999999999999999999987


Q ss_pred             HhccCCCCCCCCCCccccCCCCCCCCCCCC
Q 028792          172 RMASQPASNNARPPTVQIRGQPVNQKSGCC  201 (203)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (203)
                      ..-..|+.. +...+..-..+.+..-..||
T Consensus       162 ~~~~~~~~~-~~~~~~~v~~~~k~eia~cc  190 (192)
T KOG0083|consen  162 LKMGAPPEG-EFADHDSVADEGKGEIARCC  190 (192)
T ss_pred             hccCCCCCC-ccccchhHHhcCCCcccccc
Confidence            766655442 33344433334433445566

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.97  E-value=1.9e-29  Score=181.33  Aligned_cols=160  Identities=22%  Similarity=0.372  Sum_probs=123.8

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      ...++|+++|.++||||||+++|..+.+. .+.||.+..+  ..+..++  +.+++||+||++++..++..++.++|++|
T Consensus        15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~--~~~~~~~--~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI   89 (181)
T PLN00223         15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI   89 (181)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeE--EEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence            34689999999999999999999977765 3456666443  3344443  88999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC-----CCEEEEecCCCCCHH
Q 028792           86 VVYDVTDQESFNNVKQWLNEIDRY-ASENVNKLLVGNKCDLTANKVVSYETAKAFADEIG-----IPFMETSAKSATNVE  159 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~  159 (203)
                      ||+|+++++++.++..++..+... ...+.|+++++||.|+...  ...+++.+......     +.++++||++|+|+.
T Consensus        90 ~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~  167 (181)
T PLN00223         90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY  167 (181)
T ss_pred             EEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC--CCHHHHHHHhCccccCCCceEEEeccCCCCCCHH
Confidence            999999999998888776665432 2246899999999998654  33444444332221     246689999999999


Q ss_pred             HHHHHHHHHHHHH
Q 028792          160 QAFMAMAASIKNR  172 (203)
Q Consensus       160 ~~~~~l~~~~~~~  172 (203)
                      ++|+||.+.+.++
T Consensus       168 e~~~~l~~~~~~~  180 (181)
T PLN00223        168 EGLDWLSNNIANK  180 (181)
T ss_pred             HHHHHHHHHHhhc
Confidence            9999999887653

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=99.97  E-value=3e-29  Score=181.08  Aligned_cols=168  Identities=38%  Similarity=0.611  Sum_probs=153.8

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEE
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV   86 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (203)
                      ..++|+++|.+|+|||+|..++....+...+.||++ +.+.+.+.+++..+.+.|+|++|+..+..+...++.++|++++
T Consensus         2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l   80 (196)
T KOG0395|consen    2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL   80 (196)
T ss_pred             CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence            468999999999999999999999999999999998 5666777788999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHH
Q 028792           87 VYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAM  165 (203)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  165 (203)
                      ||+++++.||+.+..+++.+..... ...|+++|+||+|+...+.+..++...++..++++++++||+.+.+++++|..|
T Consensus        81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L  160 (196)
T KOG0395|consen   81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYEL  160 (196)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHH
Confidence            9999999999999999999854433 467999999999999889999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcc
Q 028792          166 AASIKNRMAS  175 (203)
Q Consensus       166 ~~~~~~~~~~  175 (203)
                      .+.+...+..
T Consensus       161 ~r~~~~~~~~  170 (196)
T KOG0395|consen  161 VREIRLPREG  170 (196)
T ss_pred             HHHHHhhhcc
Confidence            9988774544

>cd04149 Arf6 Arf6 subfamily

Probab=99.97  E-value=1.3e-29  Score=180.17  Aligned_cols=154  Identities=23%  Similarity=0.396  Sum_probs=121.6

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEE
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV   86 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (203)
                      ..++|+++|.+|+|||||+++|..+.+.. +.+|.+.++.  .+..  ..+.+.+||+||++++...+..++..+|++||
T Consensus         8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~   82 (168)
T cd04149           8 KEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF   82 (168)
T ss_pred             CccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccceE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence            46899999999999999999998766643 4566654443  3333  34889999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH-----cCCCEEEEecCCCCCHHH
Q 028792           87 VYDVTDQESFNNVKQWLNEIDRY-ASENVNKLLVGNKCDLTANKVVSYETAKAFADE-----IGIPFMETSAKSATNVEQ  160 (203)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~~  160 (203)
                      |||++++.++.++..++..+... ...+.|+++|+||+|+.+.  ...+++.++...     ....++++||++|.|+++
T Consensus        83 v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~  160 (168)
T cd04149          83 VVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDA--MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYE  160 (168)
T ss_pred             EEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccC--CCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHH
Confidence            99999999999888877666443 2246899999999998643  445566555432     224689999999999999


Q ss_pred             HHHHHHH
Q 028792          161 AFMAMAA  167 (203)
Q Consensus       161 ~~~~l~~  167 (203)
                      +|.||.+
T Consensus       161 ~~~~l~~  167 (168)
T cd04149         161 GLTWLSS  167 (168)
T ss_pred             HHHHHhc
Confidence            9999964

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd04158 ARD1 ARD1 subfamily

Probab=99.97  E-value=2.4e-29  Score=179.01  Aligned_cols=155  Identities=21%  Similarity=0.398  Sum_probs=124.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEEe
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYD   89 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   89 (203)
                      ||+++|.++||||||+++|.+..+.. +.+|.+..+.  .+..++  +.+.+||+||+.++...+..++..+|+++||+|
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~--~~~~~~--~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D   75 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE--TVEYKN--LKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD   75 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE--EEEECC--EEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence            68999999999999999999886543 5566654443  334443  789999999999998899999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC------CCEEEEecCCCCCHHHHH
Q 028792           90 VTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSYETAKAFADEIG------IPFMETSAKSATNVEQAF  162 (203)
Q Consensus        90 ~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~------~~~~~~Sa~~~~gi~~~~  162 (203)
                      +++++++.++..|+..+.... ..+.|+++++||+|+.+  ....+++.+++...+      +.++++||++|.|++++|
T Consensus        76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f  153 (169)
T cd04158          76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG--ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGL  153 (169)
T ss_pred             CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc--CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHH
Confidence            999999999988888775432 24589999999999864  355666666554222      368899999999999999


Q ss_pred             HHHHHHHHH
Q 028792          163 MAMAASIKN  171 (203)
Q Consensus       163 ~~l~~~~~~  171 (203)
                      +||.+.+.+
T Consensus       154 ~~l~~~~~~  162 (169)
T cd04158         154 DWLSRQLVA  162 (169)
T ss_pred             HHHHHHHhh
Confidence            999887654

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.97  E-value=3.4e-29  Score=180.40  Aligned_cols=164  Identities=24%  Similarity=0.407  Sum_probs=129.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEE-CCeEEEEEEEeCCChhhhchhhhccccCCcEEEE
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQ-DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV   86 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (203)
                      .++|+++|++|||||||++++..+.+... .++.+.......+.. ++..+.+.+||+||++++..++..++..+|++++
T Consensus         3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~   81 (183)
T cd04152           3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF   81 (183)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence            58999999999999999999998776544 456555554444443 3356889999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH------cCCCEEEEecCCCCCHH
Q 028792           87 VYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSYETAKAFADE------IGIPFMETSAKSATNVE  159 (203)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~~~gi~  159 (203)
                      |+|+++++++..+..|+..+.... ..+.|+++++||+|+...  ...++...+...      .+++++++||++|+|++
T Consensus        82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~  159 (183)
T cd04152          82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNA--LSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQ  159 (183)
T ss_pred             EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCcccc--CCHHHHHHHhCccccCCCCceEEEEeecccCCCHH
Confidence            999999999988888887765543 246899999999998642  334444444321      12468899999999999


Q ss_pred             HHHHHHHHHHHHHhc
Q 028792          160 QAFMAMAASIKNRMA  174 (203)
Q Consensus       160 ~~~~~l~~~~~~~~~  174 (203)
                      ++|.+|.+.+.+.++
T Consensus       160 ~l~~~l~~~l~~~~~  174 (183)
T cd04152         160 EGLEKLYEMILKRRK  174 (183)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999998876554

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.97  E-value=9e-29  Score=176.95  Aligned_cols=159  Identities=33%  Similarity=0.653  Sum_probs=132.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEE
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVY   88 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (203)
                      .||+++|++|||||||+++|..+.+...+.++....+. ..+..++..+.+.+||++|++.+...+...+.++|++++||
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF   80 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceE-EEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence            58999999999999999999999888777777764443 45567788889999999999998888888899999999999


Q ss_pred             eCCChhhHHHHHH-HHHHHHhhcCCCCcEEEEEeCCCCCCCc------------ccCHHHHHHHHHHcCC-CEEEEecCC
Q 028792           89 DVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDLTANK------------VVSYETAKAFADEIGI-PFMETSAKS  154 (203)
Q Consensus        89 d~~~~~s~~~~~~-~~~~l~~~~~~~~p~iiv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~Sa~~  154 (203)
                      |++++++++.+.. |+..+.... .+.|+++++||.|+.+..            .+...+..+++...+. ++++|||++
T Consensus        81 ~~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~  159 (175)
T cd01870          81 SIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKT  159 (175)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEecccc
Confidence            9999999988864 777776543 368999999999986431            2345667777777764 799999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 028792          155 ATNVEQAFMAMAASI  169 (203)
Q Consensus       155 ~~gi~~~~~~l~~~~  169 (203)
                      |.|++++|.+|.+.+
T Consensus       160 ~~~v~~lf~~l~~~~  174 (175)
T cd01870         160 KEGVREVFEMATRAA  174 (175)
T ss_pred             CcCHHHHHHHHHHHh
Confidence            999999999998654

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.97  E-value=2.7e-30  Score=183.00  Aligned_cols=153  Identities=22%  Similarity=0.338  Sum_probs=124.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEEe
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYD   89 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   89 (203)
                      +|+++|++|||||||+++|.+..+...+.+|.+...  ..  ++...+.+.+||+||+.++...+..++.++|++++|||
T Consensus         1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~--~~--i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D   76 (164)
T cd04162           1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS--VA--IPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVD   76 (164)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce--EE--EeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEE
Confidence            489999999999999999998887777777776432  22  33445889999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCH----HHHHHHHHHcCCCEEEEecCC------CCCHH
Q 028792           90 VTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSY----ETAKAFADEIGIPFMETSAKS------ATNVE  159 (203)
Q Consensus        90 ~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~----~~~~~~~~~~~~~~~~~Sa~~------~~gi~  159 (203)
                      ++++.++...+.|+..+.... .+.|+++|+||.|+........    .++..+++..++.++++||++      ++|++
T Consensus        77 ~t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~  155 (164)
T cd04162          77 SADSERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVK  155 (164)
T ss_pred             CCCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHH
Confidence            999999998888887775443 4799999999999876543321    223455566678899999888      99999


Q ss_pred             HHHHHHHH
Q 028792          160 QAFMAMAA  167 (203)
Q Consensus       160 ~~~~~l~~  167 (203)
                      ++|+.++.
T Consensus       156 ~~~~~~~~  163 (164)
T cd04162         156 DLLSQLIN  163 (164)
T ss_pred             HHHHHHhc
Confidence            99999875

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.97  E-value=4.8e-29  Score=178.40  Aligned_cols=157  Identities=21%  Similarity=0.375  Sum_probs=121.8

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      +..++|+++|.+|+|||||+++|..+.+. .+.||.+..+.  .+...  .+.+.+||+||+.++...+..++.++|++|
T Consensus        11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~--~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii   85 (175)
T smart00177       11 NKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE--TVTYK--NISFTVWDVGGQDKIRPLWRHYYTNTQGLI   85 (175)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE--EEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCEEE
Confidence            34699999999999999999999876664 35566664443  33343  378999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH-----cCCCEEEEecCCCCCHH
Q 028792           86 VVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSYETAKAFADE-----IGIPFMETSAKSATNVE  159 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~  159 (203)
                      +|+|+++++++++...++..+.... ..+.|+++|+||.|+.+.  ...+++.+....     ..+.++++||++|+|++
T Consensus        86 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~  163 (175)
T smart00177       86 FVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDA--MKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLY  163 (175)
T ss_pred             EEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccC--CCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHH
Confidence            9999999999999888877764332 246899999999998643  233333332221     12357789999999999


Q ss_pred             HHHHHHHHHH
Q 028792          160 QAFMAMAASI  169 (203)
Q Consensus       160 ~~~~~l~~~~  169 (203)
                      ++|+||.+.+
T Consensus       164 e~~~~l~~~~  173 (175)
T smart00177      164 EGLTWLSNNL  173 (175)
T ss_pred             HHHHHHHHHh
Confidence            9999998765

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.97  E-value=1.4e-29  Score=178.43  Aligned_cols=152  Identities=23%  Similarity=0.401  Sum_probs=117.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEE
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVY   88 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (203)
                      +||+++|.+|||||||+++|..+.+. .+.||.+..+.  .+...  .+.+.+||+||++++...+..++.++|+++||+
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~   75 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence            58999999999999999999877765 35666664432  33333  488999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----HcCCCEEEEecCCCCCHHHHH
Q 028792           89 DVTDQESFNNVKQWLNEIDRY-ASENVNKLLVGNKCDLTANKVVSYETAKAFAD-----EIGIPFMETSAKSATNVEQAF  162 (203)
Q Consensus        89 d~~~~~s~~~~~~~~~~l~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~~~  162 (203)
                      |+++++++..+..++..+... ...+.|+++++||.|+...  ...+++.....     ...+.++++||++|+|++++|
T Consensus        76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~  153 (159)
T cd04150          76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNA--MSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGL  153 (159)
T ss_pred             eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCC--CCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHH
Confidence            999999999988877666432 2246899999999998643  22333322221     123457899999999999999


Q ss_pred             HHHHH
Q 028792          163 MAMAA  167 (203)
Q Consensus       163 ~~l~~  167 (203)
                      +||.+
T Consensus       154 ~~l~~  158 (159)
T cd04150         154 DWLSN  158 (159)
T ss_pred             HHHhc
Confidence            99864

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd04154 Arl2 Arl2 subfamily

Probab=99.97  E-value=9.2e-29  Score=176.68  Aligned_cols=156  Identities=24%  Similarity=0.396  Sum_probs=123.4

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEE
Q 028792            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI   84 (203)
Q Consensus         5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (203)
                      .+..++|+++|++|+|||||+++|.+..+ ..+.++.+  +....+..++  +.+.+||+||+..+...+..++..+|++
T Consensus        11 ~~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g--~~~~~~~~~~--~~l~l~D~~G~~~~~~~~~~~~~~~d~~   85 (173)
T cd04154          11 KEREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLG--FQIKTLEYEG--YKLNIWDVGGQKTLRPYWRNYFESTDAL   85 (173)
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccc--cceEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEE
Confidence            45678999999999999999999998754 34445554  3334455554  7899999999998888888999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH-----cCCCEEEEecCCCCCH
Q 028792           85 IVVYDVTDQESFNNVKQWLNEIDRY-ASENVNKLLVGNKCDLTANKVVSYETAKAFADE-----IGIPFMETSAKSATNV  158 (203)
Q Consensus        85 i~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi  158 (203)
                      ++|+|++++.++.....|+..+... ...+.|+++|+||+|+.+..  ..+++..+.+.     .+++++++||++|.|+
T Consensus        86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi  163 (173)
T cd04154          86 IWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGAL--SEEEIREALELDKISSHHWRIQPCSAVTGEGL  163 (173)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCC--CHHHHHHHhCccccCCCceEEEeccCCCCcCH
Confidence            9999999999999888887776443 22579999999999986532  44555555432     3568999999999999


Q ss_pred             HHHHHHHHH
Q 028792          159 EQAFMAMAA  167 (203)
Q Consensus       159 ~~~~~~l~~  167 (203)
                      +++|++|..
T Consensus       164 ~~l~~~l~~  172 (173)
T cd04154         164 LQGIDWLVD  172 (173)
T ss_pred             HHHHHHHhc
Confidence            999999864

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.97  E-value=1.6e-28  Score=176.69  Aligned_cols=159  Identities=24%  Similarity=0.390  Sum_probs=121.9

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEE
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV   86 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (203)
                      ..+||+++|++|||||||++++..+.+.. +.+|.+..+.  .+..+  .+.+++||+||++++...+..++..+|++|+
T Consensus        16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~   90 (182)
T PTZ00133         16 KEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVEYK--NLKFTMWDVGGQDKLRPLWRHYYQNTNGLIF   90 (182)
T ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence            45899999999999999999998776654 4566654443  33343  3889999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH-----cCCCEEEEecCCCCCHHH
Q 028792           87 VYDVTDQESFNNVKQWLNEIDRY-ASENVNKLLVGNKCDLTANKVVSYETAKAFADE-----IGIPFMETSAKSATNVEQ  160 (203)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~~  160 (203)
                      |+|+++++++.....++..+... ...+.|+++++||.|+.+.  ...+++......     ..+.++++||++|.|+++
T Consensus        91 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e  168 (182)
T PTZ00133         91 VVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNA--MSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYE  168 (182)
T ss_pred             EEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCC--CCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHH
Confidence            99999999999888766665332 2236899999999998642  233333222211     123567999999999999


Q ss_pred             HHHHHHHHHHHH
Q 028792          161 AFMAMAASIKNR  172 (203)
Q Consensus       161 ~~~~l~~~~~~~  172 (203)
                      +|+||.+.+...
T Consensus       169 ~~~~l~~~i~~~  180 (182)
T PTZ00133        169 GLDWLSANIKKS  180 (182)
T ss_pred             HHHHHHHHHHHh
Confidence            999999877654

>cd00157 Rho Rho (Ras homology) family

Probab=99.97  E-value=2.9e-28  Score=173.53  Aligned_cols=157  Identities=35%  Similarity=0.651  Sum_probs=130.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEE
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVY   88 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (203)
                      +||+++|++|+|||||+++|.+..+...+.++.. +.....+..++..+.+.+||+||+..+.......+..+|++++||
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF   79 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence            6899999999999999999999888666666654 333445567788889999999999988877888889999999999


Q ss_pred             eCCChhhHHHHHH-HHHHHHhhcCCCCcEEEEEeCCCCCCCc-----------ccCHHHHHHHHHHcCC-CEEEEecCCC
Q 028792           89 DVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDLTANK-----------VVSYETAKAFADEIGI-PFMETSAKSA  155 (203)
Q Consensus        89 d~~~~~s~~~~~~-~~~~l~~~~~~~~p~iiv~nK~D~~~~~-----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~  155 (203)
                      |+++++++..... |+..+..... +.|+++|+||+|+....           .+..++..++...++. +++++||++|
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~  158 (171)
T cd00157          80 SVDSPSSFENVKTKWIPEIRHYCP-NVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQ  158 (171)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCC
Confidence            9999999887654 6666665543 79999999999987654           2346677788888887 9999999999


Q ss_pred             CCHHHHHHHHHH
Q 028792          156 TNVEQAFMAMAA  167 (203)
Q Consensus       156 ~gi~~~~~~l~~  167 (203)
                      .|++++|++|++
T Consensus       159 ~gi~~l~~~i~~  170 (171)
T cd00157         159 EGVKEVFEEAIR  170 (171)
T ss_pred             CCHHHHHHHHhh
Confidence            999999999875

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.96  E-value=7.7e-28  Score=177.64  Aligned_cols=166  Identities=33%  Similarity=0.579  Sum_probs=143.8

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcE
Q 028792            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG   83 (203)
Q Consensus         4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   83 (203)
                      +....+||+++|++|||||||+++++.+.+...+.++.+.++....+..+++.+.+.+||++|+.++...+..++.++++
T Consensus         5 ~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~   84 (215)
T PTZ00132          5 DEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQC   84 (215)
T ss_pred             cCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCE
Confidence            55677999999999999999999998888888888999888888888788888999999999999988888888999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHH
Q 028792           84 IIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFM  163 (203)
Q Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  163 (203)
                      +++|||+++..++..+..|+..+.... .+.|+++++||.|+.+. .... +...++...++.++++||++|.|++++|.
T Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~i~lv~nK~Dl~~~-~~~~-~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~  161 (215)
T PTZ00132         85 AIIMFDVTSRITYKNVPNWHRDIVRVC-ENIPIVLVGNKVDVKDR-QVKA-RQITFHRKKNLQYYDISAKSNYNFEKPFL  161 (215)
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccCccc-cCCH-HHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            999999999999999999998887664 36899999999998643 2322 33456777788999999999999999999


Q ss_pred             HHHHHHHHH
Q 028792          164 AMAASIKNR  172 (203)
Q Consensus       164 ~l~~~~~~~  172 (203)
                      +|.+.+...
T Consensus       162 ~ia~~l~~~  170 (215)
T PTZ00132        162 WLARRLTND  170 (215)
T ss_pred             HHHHHHhhc
Confidence            999988753

>cd01893 Miro1 Miro1 subfamily

Probab=99.96  E-value=3.9e-28  Score=172.30  Aligned_cols=160  Identities=26%  Similarity=0.408  Sum_probs=123.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEE
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVY   88 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (203)
                      +||+++|.+|+|||||+++|..+.++..+.++.. . ........+..+.+.+||+||...+...+..++..+|++++||
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~   78 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLP-E-ITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY   78 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCccCCCccc-c-eEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence            4899999999999999999999888665433221 2 2233445667789999999999887777777789999999999


Q ss_pred             eCCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCcccC--HHHHHHHHHHcC--CCEEEEecCCCCCHHHHHH
Q 028792           89 DVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTANKVVS--YETAKAFADEIG--IPFMETSAKSATNVEQAFM  163 (203)
Q Consensus        89 d~~~~~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~~~~  163 (203)
                      |++++++++.+. .|+..+..... +.|+++|+||+|+.+.....  .+....+....+  .+++++||++|.|++++|+
T Consensus        79 d~~~~~s~~~~~~~~~~~i~~~~~-~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~  157 (166)
T cd01893          79 SVDRPSTLERIRTKWLPLIRRLGV-KVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFY  157 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHH
Confidence            999999999975 57777766544 78999999999997654321  233333333333  3799999999999999999


Q ss_pred             HHHHHHHH
Q 028792          164 AMAASIKN  171 (203)
Q Consensus       164 ~l~~~~~~  171 (203)
                      .+...+.+
T Consensus       158 ~~~~~~~~  165 (166)
T cd01893         158 YAQKAVLH  165 (166)
T ss_pred             HHHHHhcC
Confidence            99887753

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.96  E-value=5.5e-28  Score=172.75  Aligned_cols=158  Identities=33%  Similarity=0.504  Sum_probs=127.8

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEE
Q 028792            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI   84 (203)
Q Consensus         5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (203)
                      ..+.++|+++|.+|||||||+++|..+.... ..||.+  +....+..++  +.+.+||.+|+..+...|..++..+|++
T Consensus        11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g--~~~~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~i   85 (175)
T PF00025_consen   11 KKKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIG--FNIEEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGI   85 (175)
T ss_dssp             TTSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESS--EEEEEEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEE
T ss_pred             cCcEEEEEEECCCccchHHHHHHhhhccccc-cCcccc--cccceeeeCc--EEEEEEeccccccccccceeecccccee
Confidence            3678999999999999999999999765433 445555  5556666666  7889999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH------cCCCEEEEecCCCCC
Q 028792           85 IVVYDVTDQESFNNVKQWLNEIDRY-ASENVNKLLVGNKCDLTANKVVSYETAKAFADE------IGIPFMETSAKSATN  157 (203)
Q Consensus        85 i~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~~~g  157 (203)
                      |||+|.++++.+.+....+..+... ...+.|++|++||.|+.+.  ...+++......      ..+.++.|||.+|+|
T Consensus        86 IfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~--~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~G  163 (175)
T PF00025_consen   86 IFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDA--MSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEG  163 (175)
T ss_dssp             EEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTS--STHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBT
T ss_pred             EEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCc--chhhHHHhhhhhhhcccCCceEEEeeeccCCcC
Confidence            9999999999998888877766543 2257999999999998653  455555554332      235699999999999


Q ss_pred             HHHHHHHHHHHH
Q 028792          158 VEQAFMAMAASI  169 (203)
Q Consensus       158 i~~~~~~l~~~~  169 (203)
                      +.+.++||.+.+
T Consensus       164 v~e~l~WL~~~~  175 (175)
T PF00025_consen  164 VDEGLEWLIEQI  175 (175)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC
Confidence            999999999864

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>cd04157 Arl6 Arl6 subfamily

Probab=99.96  E-value=6.9e-28  Score=170.16  Aligned_cols=152  Identities=20%  Similarity=0.351  Sum_probs=116.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC-CCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEE
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDSY-LESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVY   88 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (203)
                      +|+++|++|||||||+++|.+... ...+.++.+...  ..+...  .+.+.+||+||+.++...+..++..+|++|+|+
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~--~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   76 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNV--ESFEKG--NLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI   76 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccce--EEEEEC--CEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence            589999999999999999998753 445566665433  223333  478999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhh---cCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----HcCCCEEEEecCCCCCHHH
Q 028792           89 DVTDQESFNNVKQWLNEIDRY---ASENVNKLLVGNKCDLTANKVVSYETAKAFAD-----EIGIPFMETSAKSATNVEQ  160 (203)
Q Consensus        89 d~~~~~s~~~~~~~~~~l~~~---~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~  160 (203)
                      |++++.++.....|+..+...   ...+.|+++|+||+|+.+..  ..++..+...     ....+++++||++|.|+++
T Consensus        77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~--~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~  154 (162)
T cd04157          77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDAL--TAVKITQLLGLENIKDKPWHIFASNALTGEGLDE  154 (162)
T ss_pred             eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCC--CHHHHHHHhCCccccCceEEEEEeeCCCCCchHH
Confidence            999999988888877776543   22479999999999986532  2233222211     1124589999999999999


Q ss_pred             HHHHHHH
Q 028792          161 AFMAMAA  167 (203)
Q Consensus       161 ~~~~l~~  167 (203)
                      +|+||.+
T Consensus       155 ~~~~l~~  161 (162)
T cd04157         155 GVQWLQA  161 (162)
T ss_pred             HHHHHhc
Confidence            9999864

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.96  E-value=3e-28  Score=173.08  Aligned_cols=151  Identities=23%  Similarity=0.336  Sum_probs=119.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEEe
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYD   89 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   89 (203)
                      +|+++|++|||||||+++|.+. +...+.+|.+..  ...+..++  +.+.+||+||+..+..++..++.++|++|+|||
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~--~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D   75 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFT--PTKLRLDK--YEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD   75 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCC-CCccccCcccce--EEEEEECC--EEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence            4899999999999999999976 555666666643  34455544  789999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHH------HHHHHHcC--CCEEEEecCCC-----
Q 028792           90 VTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTANKVVSYETA------KAFADEIG--IPFMETSAKSA-----  155 (203)
Q Consensus        90 ~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~------~~~~~~~~--~~~~~~Sa~~~-----  155 (203)
                      ++++.++.++..|+..+..... .+.|+++|+||.|+.....  ..++      .++++..+  +.+++|||++|     
T Consensus        76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~--~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~  153 (167)
T cd04161          76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALL--GADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKI  153 (167)
T ss_pred             CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCC--HHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcc
Confidence            9999999999998888765432 4789999999999875432  2222      22332222  56888999998     


Q ss_pred             -CCHHHHHHHHHH
Q 028792          156 -TNVEQAFMAMAA  167 (203)
Q Consensus       156 -~gi~~~~~~l~~  167 (203)
                       .|+.+.|+||..
T Consensus       154 ~~g~~~~~~wl~~  166 (167)
T cd04161         154 DPSIVEGLRWLLA  166 (167)
T ss_pred             ccCHHHHHHHHhc
Confidence             899999999964

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.96  E-value=2.6e-27  Score=159.83  Aligned_cols=164  Identities=23%  Similarity=0.395  Sum_probs=132.5

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEE
Q 028792            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI   84 (203)
Q Consensus         5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (203)
                      .+++++|+++|..||||||++++|.+... ....|+.+  +...++..++  +.+++||.+|+..++..|..++..+|++
T Consensus        13 kerE~riLiLGLdNsGKTti~~kl~~~~~-~~i~pt~g--f~Iktl~~~~--~~L~iwDvGGq~~lr~~W~nYfestdgl   87 (185)
T KOG0073|consen   13 KEREVRILILGLDNSGKTTIVKKLLGEDT-DTISPTLG--FQIKTLEYKG--YTLNIWDVGGQKTLRSYWKNYFESTDGL   87 (185)
T ss_pred             hhheeEEEEEecCCCCchhHHHHhcCCCc-cccCCccc--eeeEEEEecc--eEEEEEEcCCcchhHHHHHHhhhccCeE
Confidence            56799999999999999999999998662 22234444  6666776766  8899999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHh-hcCCCCcEEEEEeCCCCCCCcc---cC-HHHHHHHHHHcCCCEEEEecCCCCCHH
Q 028792           85 IVVYDVTDQESFNNVKQWLNEIDR-YASENVNKLLVGNKCDLTANKV---VS-YETAKAFADEIGIPFMETSAKSATNVE  159 (203)
Q Consensus        85 i~v~d~~~~~s~~~~~~~~~~l~~-~~~~~~p~iiv~nK~D~~~~~~---~~-~~~~~~~~~~~~~~~~~~Sa~~~~gi~  159 (203)
                      |||+|.+|+..+++....+..+.. ....+.|+++++||.|+...-.   +. ..++.++++.+.++++.|||.+|+++.
T Consensus        88 IwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~  167 (185)
T KOG0073|consen   88 IWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLL  167 (185)
T ss_pred             EEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccHH
Confidence            999999999999888776665533 2335789999999999874311   11 123445667788999999999999999


Q ss_pred             HHHHHHHHHHHHHh
Q 028792          160 QAFMAMAASIKNRM  173 (203)
Q Consensus       160 ~~~~~l~~~~~~~~  173 (203)
                      +.++||.+.+.++.
T Consensus       168 ~gidWL~~~l~~r~  181 (185)
T KOG0073|consen  168 EGIDWLCDDLMSRL  181 (185)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999998743

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=99.96  E-value=3.8e-28  Score=171.89  Aligned_cols=167  Identities=34%  Similarity=0.604  Sum_probs=147.9

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEE-CCeEEEEEEEeCCChhhhchhhhccccCCcEE
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQ-DGKTIKLQIWDTAGQERFRTITSSYYRGAHGI   84 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (203)
                      .+.+|+++||+.++|||+|+..+..+.++..+.||+. +-+...+.+ ++..+.+.+|||.|++.|+.++..-+.++|++
T Consensus         2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvf   80 (198)
T KOG0393|consen    2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVF   80 (198)
T ss_pred             ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEE
Confidence            3578999999999999999999999999999999997 445555667 59999999999999999999888889999999


Q ss_pred             EEEEeCCChhhHHHHHH-HHHHHHhhcCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHcC-CCEEEE
Q 028792           85 IVVYDVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDLTAN------------KVVSYETAKAFADEIG-IPFMET  150 (203)
Q Consensus        85 i~v~d~~~~~s~~~~~~-~~~~l~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~  150 (203)
                      ++||++.++++|+++.. |+.++.++.+ +.|+|+|++|.|+.+.            ..+..++...++++.+ ..|++|
T Consensus        81 l~cfsv~~p~S~~nv~~kW~pEi~~~cp-~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~Ec  159 (198)
T KOG0393|consen   81 LLCFSVVSPESFENVKSKWIPEIKHHCP-NVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLEC  159 (198)
T ss_pred             EEEEEcCChhhHHHHHhhhhHHHHhhCC-CCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeee
Confidence            99999999999999766 9999988875 7999999999999743            2567788899999999 589999


Q ss_pred             ecCCCCCHHHHHHHHHHHHHHHhc
Q 028792          151 SAKSATNVEQAFMAMAASIKNRMA  174 (203)
Q Consensus       151 Sa~~~~gi~~~~~~l~~~~~~~~~  174 (203)
                      ||+++.|+.++|+..+...+....
T Consensus       160 Sa~tq~~v~~vF~~a~~~~l~~~~  183 (198)
T KOG0393|consen  160 SALTQKGVKEVFDEAIRAALRPPQ  183 (198)
T ss_pred             hhhhhCCcHHHHHHHHHHHhcccc
Confidence            999999999999999998875443

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.96  E-value=2.7e-27  Score=172.00  Aligned_cols=148  Identities=25%  Similarity=0.424  Sum_probs=125.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEEC-----CeEEEEEEEeCCChhhhchhhhccccCCcE
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQD-----GKTIKLQIWDTAGQERFRTITSSYYRGAHG   83 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   83 (203)
                      +||+++|.+++|||||+++|.++.+...+.+|++.++....+.++     +..+.+.+||++|++++..++..++.++|+
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~   80 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG   80 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence            589999999999999999999999988888888877776666653     467899999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhc-------------------CCCCcEEEEEeCCCCCCCcccCHH----HHHHHH
Q 028792           84 IIVVYDVTDQESFNNVKQWLNEIDRYA-------------------SENVNKLLVGNKCDLTANKVVSYE----TAKAFA  140 (203)
Q Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~l~~~~-------------------~~~~p~iiv~nK~D~~~~~~~~~~----~~~~~~  140 (203)
                      +|+|||++++++++.+..|+..+....                   ..+.|+++|+||.|+.+.+....+    ....++
T Consensus        81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia  160 (202)
T cd04102          81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA  160 (202)
T ss_pred             EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence            999999999999999999999986531                   236899999999999766544443    234678


Q ss_pred             HHcCCCEEEEecCCCC
Q 028792          141 DEIGIPFMETSAKSAT  156 (203)
Q Consensus       141 ~~~~~~~~~~Sa~~~~  156 (203)
                      ++.+++.++.++.++.
T Consensus       161 ~~~~~~~i~~~c~~~~  176 (202)
T cd04102         161 EQGNAEEINLNCTNGR  176 (202)
T ss_pred             HhcCCceEEEecCCcc
Confidence            8889999988877544

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>cd00879 Sar1 Sar1 subfamily

Probab=99.96  E-value=1.9e-27  Score=172.29  Aligned_cols=156  Identities=26%  Similarity=0.350  Sum_probs=123.8

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      .+.++|+++|++|||||||+++|.++.+. .+.++.+.  ....+.+++  ..+.+||+||+.++...+..++..+|+++
T Consensus        17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~--~~~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~ii   91 (190)
T cd00879          17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHP--TSEELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIV   91 (190)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCc--ceEEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence            45689999999999999999999987764 34455543  334455555  67899999999988888888999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHH----------------cCCCEE
Q 028792           86 VVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTANKVVSYETAKAFADE----------------IGIPFM  148 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~----------------~~~~~~  148 (203)
                      +|+|+++++++.....++..+..... .+.|+++++||+|+..  .+..+++..+...                ....++
T Consensus        92 lV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (190)
T cd00879          92 FLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG--AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVF  169 (190)
T ss_pred             EEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC--CcCHHHHHHHhCcccccccccccccccCceeEEEE
Confidence            99999999998888887777654332 4689999999999864  3455666665542                124689


Q ss_pred             EEecCCCCCHHHHHHHHHHH
Q 028792          149 ETSAKSATNVEQAFMAMAAS  168 (203)
Q Consensus       149 ~~Sa~~~~gi~~~~~~l~~~  168 (203)
                      +|||++|+|++++|.||.+.
T Consensus       170 ~~Sa~~~~gv~e~~~~l~~~  189 (190)
T cd00879         170 MCSVVKRQGYGEAFRWLSQY  189 (190)
T ss_pred             EeEecCCCChHHHHHHHHhh
Confidence            99999999999999999764

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.96  E-value=2e-27  Score=169.90  Aligned_cols=154  Identities=21%  Similarity=0.337  Sum_probs=119.1

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEE
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV   86 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (203)
                      ..++|+++|++|+|||||+++|..+.+.. +.++.+..+  ..+..++  +.+.+||+||+.++...+..++..+|++++
T Consensus        14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~   88 (174)
T cd04153          14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNV--EEIVYKN--IRFLMWDIGGQESLRSSWNTYYTNTDAVIL   88 (174)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccce--EEEEECC--eEEEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence            35899999999999999999999877654 455555443  3344443  789999999999998889999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCcccCHHHHHHHH-----HHcCCCEEEEecCCCCCHHH
Q 028792           87 VYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSYETAKAFA-----DEIGIPFMETSAKSATNVEQ  160 (203)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~  160 (203)
                      |+|+++++++.....++..+.... ..+.|+++++||+|+...  ...+++.+..     ...+++++++||++|+|+++
T Consensus        89 V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~--~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e  166 (174)
T cd04153          89 VIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGA--MTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPE  166 (174)
T ss_pred             EEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEecccCCCCCHHH
Confidence            999999998888777666654332 246899999999998652  2333332222     22345799999999999999


Q ss_pred             HHHHHHH
Q 028792          161 AFMAMAA  167 (203)
Q Consensus       161 ~~~~l~~  167 (203)
                      +|+||.+
T Consensus       167 ~~~~l~~  173 (174)
T cd04153         167 GLDWIAS  173 (174)
T ss_pred             HHHHHhc
Confidence            9999864

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>PTZ00099 rab6; Provisional

Probab=99.95  E-value=1.4e-26  Score=165.36  Aligned_cols=145  Identities=42%  Similarity=0.654  Sum_probs=128.8

Q ss_pred             CCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhc
Q 028792           31 DSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA  110 (203)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~  110 (203)
                      +.+.+.+.+|++.++....+..++..+.+.|||++|++++..++..++.++|++|+|||++++++|+.+..|+..+....
T Consensus         3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~   82 (176)
T PTZ00099          3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER   82 (176)
T ss_pred             CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence            35667788999988988888889999999999999999999999999999999999999999999999999999887665


Q ss_pred             CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHHHHHHHhcc
Q 028792          111 SENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMAS  175 (203)
Q Consensus       111 ~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~~  175 (203)
                      ....|+++|+||+|+.+.+.+..++...++..+++.++++||++|.|++++|++|.+.+.+..+.
T Consensus        83 ~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~~~  147 (176)
T PTZ00099         83 GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLDNS  147 (176)
T ss_pred             CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhcccc
Confidence            45689999999999976666788888888888889999999999999999999999998765544

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.95  E-value=1.8e-27  Score=167.84  Aligned_cols=152  Identities=26%  Similarity=0.458  Sum_probs=116.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEEe
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYD   89 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   89 (203)
                      +|+++|++|+|||||+++|..+.+... .++.+..+  ..+... ..+.+.+||+||+..+...+..++..+|++++|+|
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-~~t~~~~~--~~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D   76 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVTT-IPTVGFNV--EMLQLE-KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD   76 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCcccc-cCccCcce--EEEEeC-CceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence            589999999999999999998876543 45554333  333332 34789999999999988888889999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCcccCHHHHHHH------HHHcCCCEEEEecCCCCCHHHHH
Q 028792           90 VTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSYETAKAF------ADEIGIPFMETSAKSATNVEQAF  162 (203)
Q Consensus        90 ~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~------~~~~~~~~~~~Sa~~~~gi~~~~  162 (203)
                      ++++.++.....|+..+.... ..+.|+++|+||+|+...  ...+++...      ....+++++++||++|+|++++|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~  154 (160)
T cd04156          77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGA--LTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAF  154 (160)
T ss_pred             CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccC--cCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHH
Confidence            999999888888777765432 247999999999998542  222333222      12234579999999999999999


Q ss_pred             HHHHH
Q 028792          163 MAMAA  167 (203)
Q Consensus       163 ~~l~~  167 (203)
                      ++|.+
T Consensus       155 ~~i~~  159 (160)
T cd04156         155 RKLAS  159 (160)
T ss_pred             HHHhc
Confidence            99864

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.95  E-value=3.9e-27  Score=167.18  Aligned_cols=152  Identities=29%  Similarity=0.432  Sum_probs=116.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC------CCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcE
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDSY------LESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG   83 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   83 (203)
                      +|+++|++|+|||||+++|.....      ...+.++.+..+  ..+..++  ..+.+||+||+..+...+..++..+|+
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~   76 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI--GTIEVGN--ARLKFWDLGGQESLRSLWDKYYAECHA   76 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce--EEEEECC--EEEEEEECCCChhhHHHHHHHhCCCCE
Confidence            589999999999999999986432      223344444333  3444554  789999999999999889999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH-------cCCCEEEEecCCC
Q 028792           84 IIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSYETAKAFADE-------IGIPFMETSAKSA  155 (203)
Q Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~  155 (203)
                      +++|+|+++++++.....++..+.... ..+.|+++++||+|+...  ...++...+...       .+++++++||++|
T Consensus        77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  154 (167)
T cd04160          77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA--LSVEEIKEVFQDKAEEIGRRDCLVLPVSALEG  154 (167)
T ss_pred             EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC--CCHHHHHHHhccccccccCCceEEEEeeCCCC
Confidence            999999999988888888777765432 247899999999998653  333444444332       2457999999999


Q ss_pred             CCHHHHHHHHHH
Q 028792          156 TNVEQAFMAMAA  167 (203)
Q Consensus       156 ~gi~~~~~~l~~  167 (203)
                      +|++++++||.+
T Consensus       155 ~gv~e~~~~l~~  166 (167)
T cd04160         155 TGVREGIEWLVE  166 (167)
T ss_pred             cCHHHHHHHHhc
Confidence            999999999864

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.95  E-value=1.4e-26  Score=166.97  Aligned_cols=156  Identities=21%  Similarity=0.267  Sum_probs=120.9

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      .+.++|+++|.+|+|||||+++|.++.+.. +.++.+.  ....+..++  +.+.+||+||+..+...+..++..+|+++
T Consensus        15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~ad~ii   89 (184)
T smart00178       15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHP--TSEELAIGN--IKFTTFDLGGHQQARRLWKDYFPEVNGIV   89 (184)
T ss_pred             cccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCcccc--ceEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence            456999999999999999999999876543 3344433  233444444  78899999999988889999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH------------cCCCEEEEec
Q 028792           86 VVYDVTDQESFNNVKQWLNEIDRY-ASENVNKLLVGNKCDLTANKVVSYETAKAFADE------------IGIPFMETSA  152 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~Sa  152 (203)
                      +|+|+++++++.....++..+... ...+.|+++++||.|+..  .++.+++.+....            ....+++|||
T Consensus        90 ~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~--~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa  167 (184)
T smart00178       90 YLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY--AASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSV  167 (184)
T ss_pred             EEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC--CCCHHHHHHHcCCCcccccccccCCceeEEEEeec
Confidence            999999999988888777666443 224689999999999853  3455555544321            1235999999


Q ss_pred             CCCCCHHHHHHHHHHH
Q 028792          153 KSATNVEQAFMAMAAS  168 (203)
Q Consensus       153 ~~~~gi~~~~~~l~~~  168 (203)
                      ++|.|++++++||.+.
T Consensus       168 ~~~~g~~~~~~wl~~~  183 (184)
T smart00178      168 VRRMGYGEGFKWLSQY  183 (184)
T ss_pred             ccCCChHHHHHHHHhh
Confidence            9999999999999764

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd04151 Arl1 Arl1 subfamily

Probab=99.95  E-value=2.1e-26  Score=162.13  Aligned_cols=151  Identities=25%  Similarity=0.392  Sum_probs=112.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEEe
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYD   89 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   89 (203)
                      ||+++|++++|||||+++|..+.+.. ..++.+...  ..+...  ...+++||+||+.++...+..++..+|++++|+|
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d   75 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNV--ETVTYK--NLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD   75 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCe--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence            68999999999999999998766543 345544333  233333  3789999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHH-HhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----HcCCCEEEEecCCCCCHHHHHH
Q 028792           90 VTDQESFNNVKQWLNEI-DRYASENVNKLLVGNKCDLTANKVVSYETAKAFAD-----EIGIPFMETSAKSATNVEQAFM  163 (203)
Q Consensus        90 ~~~~~s~~~~~~~~~~l-~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~~~~  163 (203)
                      ++++.++.....++..+ ......+.|+++++||+|+.+..  ...++.+...     ..+.+++++||++|.|++++|+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  153 (158)
T cd04151          76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL--SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMD  153 (158)
T ss_pred             CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC--CHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHH
Confidence            99988877766655443 22222468999999999986432  2233322211     1124699999999999999999


Q ss_pred             HHHH
Q 028792          164 AMAA  167 (203)
Q Consensus       164 ~l~~  167 (203)
                      +|.+
T Consensus       154 ~l~~  157 (158)
T cd04151         154 WLVN  157 (158)
T ss_pred             HHhc
Confidence            9864

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.95  E-value=6.3e-27  Score=164.70  Aligned_cols=151  Identities=25%  Similarity=0.406  Sum_probs=118.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEEe
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYD   89 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   89 (203)
                      ||+++|.+|+|||||++++.+... ....++.+...  ..+.+..  +.+.+||+||+..+...+..++..+|++++|+|
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D   75 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNV--ETVEYKN--VSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD   75 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcce--EEEEECC--EEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence            689999999999999999998873 33444554333  3344444  789999999999998899999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH-----cCCCEEEEecCCCCCHHHHHH
Q 028792           90 VTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSYETAKAFADE-----IGIPFMETSAKSATNVEQAFM  163 (203)
Q Consensus        90 ~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~~~~~  163 (203)
                      +++++++.....++..+.... ..+.|+++++||+|+....  ..++..+....     ..++++++||++|.|++++|.
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~  153 (158)
T cd00878          76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL--SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLD  153 (158)
T ss_pred             CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc--CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHH
Confidence            999999998888777665432 3578999999999987543  23334333322     346799999999999999999


Q ss_pred             HHHH
Q 028792          164 AMAA  167 (203)
Q Consensus       164 ~l~~  167 (203)
                      +|..
T Consensus       154 ~l~~  157 (158)
T cd00878         154 WLLQ  157 (158)
T ss_pred             HHhh
Confidence            9875

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.95  E-value=1.1e-28  Score=168.97  Aligned_cols=172  Identities=30%  Similarity=0.572  Sum_probs=161.2

Q ss_pred             CCCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCc
Q 028792            3 NEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAH   82 (203)
Q Consensus         3 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d   82 (203)
                      .+.++.+|++|+|..++||||+|++++.+-+...+..+++.++....+.+.+..+++.+||++|+++++.....+++.+.
T Consensus        15 ~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaq   94 (246)
T KOG4252|consen   15 TDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQ   94 (246)
T ss_pred             hhhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhcccc
Confidence            36788899999999999999999999999988899999999888888888888899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHH
Q 028792           83 GIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAF  162 (203)
Q Consensus        83 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~  162 (203)
                      +.++||+.+|+.+|+....|++.+..... .+|.++|-||+|+.+...+...+++.+++.++..++.+|++...++..+|
T Consensus        95 a~vLVFSTTDr~SFea~~~w~~kv~~e~~-~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV~~vF  173 (246)
T KOG4252|consen   95 ASVLVFSTTDRYSFEATLEWYNKVQKETE-RIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHVF  173 (246)
T ss_pred             ceEEEEecccHHHHHHHHHHHHHHHHHhc-cCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHHH
Confidence            99999999999999999999999988776 59999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcc
Q 028792          163 MAMAASIKNRMAS  175 (203)
Q Consensus       163 ~~l~~~~~~~~~~  175 (203)
                      ..|.+.+.++..+
T Consensus       174 ~YLaeK~~q~~kq  186 (246)
T KOG4252|consen  174 AYLAEKLTQQKKQ  186 (246)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999988876655

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.95  E-value=7.2e-26  Score=175.84  Aligned_cols=163  Identities=17%  Similarity=0.177  Sum_probs=122.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhh-------hchhhhccccCC
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER-------FRTITSSYYRGA   81 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------~~~~~~~~~~~~   81 (203)
                      ..|+++|.||||||||+++|.+........+.++.......+.+.+ ...+.+||+||...       ....+...+..+
T Consensus       159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~-~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a  237 (335)
T PRK12299        159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDD-YKSFVIADIPGLIEGASEGAGLGHRFLKHIERT  237 (335)
T ss_pred             CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCC-CcEEEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence            5689999999999999999997654333334444455555555522 25689999999642       122233345679


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHH
Q 028792           82 HGIIVVYDVTDQESFNNVKQWLNEIDRYAS--ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVE  159 (203)
Q Consensus        82 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  159 (203)
                      +++++|+|+++.++++.+..|...+..+..  .++|+++|+||+|+.+......+....+....+.+++++||++++|++
T Consensus       238 ~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~  317 (335)
T PRK12299        238 RLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGLD  317 (335)
T ss_pred             CEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCHH
Confidence            999999999988888999999998877643  368999999999987654443344555555667899999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 028792          160 QAFMAMAASIKNR  172 (203)
Q Consensus       160 ~~~~~l~~~~~~~  172 (203)
                      +++++|.+.+.+.
T Consensus       318 eL~~~L~~~l~~~  330 (335)
T PRK12299        318 ELLRALWELLEEA  330 (335)
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999887653

>PLN00023 GTP-binding protein; Provisional

Probab=99.95  E-value=2.4e-25  Score=169.54  Aligned_cols=142  Identities=24%  Similarity=0.495  Sum_probs=121.5

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEEC-------------CeEEEEEEEeCCChhhh
Q 028792            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQD-------------GKTIKLQIWDTAGQERF   70 (203)
Q Consensus         4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~i~D~~g~~~~   70 (203)
                      +....+||+++|..|||||||+++|..+.+...+.+|++.++....+.++             +..+.+.|||++|++++
T Consensus        17 ~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErf   96 (334)
T PLN00023         17 PPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERY   96 (334)
T ss_pred             CCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhh
Confidence            44567999999999999999999999998888888898888776666654             24688999999999999


Q ss_pred             chhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC------------CCCcEEEEEeCCCCCCCc---c---cC
Q 028792           71 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYAS------------ENVNKLLVGNKCDLTANK---V---VS  132 (203)
Q Consensus        71 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~------------~~~p~iiv~nK~D~~~~~---~---~~  132 (203)
                      ..++..++.++|++|+|||++++.+++.+..|+..+.....            .+.|++||+||+|+...+   .   ..
T Consensus        97 rsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~  176 (334)
T PLN00023         97 KDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNL  176 (334)
T ss_pred             hhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccccccccccccc
Confidence            99999999999999999999999999999999999976531            248999999999996542   2   35


Q ss_pred             HHHHHHHHHHcCC
Q 028792          133 YETAKAFADEIGI  145 (203)
Q Consensus       133 ~~~~~~~~~~~~~  145 (203)
                      .++++++++++++
T Consensus       177 ~e~a~~~A~~~g~  189 (334)
T PLN00023        177 VDAARQWVEKQGL  189 (334)
T ss_pred             HHHHHHHHHHcCC
Confidence            7889999999873

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.94  E-value=6.4e-26  Score=161.08  Aligned_cols=155  Identities=15%  Similarity=0.164  Sum_probs=108.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhch---------hhhccccC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT---------ITSSYYRG   80 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---------~~~~~~~~   80 (203)
                      +|+++|.+|+|||||+++|.+..+.....+..+.+.....+..+  .+.+++|||||......         ........
T Consensus         2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~   79 (168)
T cd01897           2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYK--YLRWQVIDTPGLLDRPLEERNTIEMQAITALAHL   79 (168)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccC--ceEEEEEECCCcCCccccCCchHHHHHHHHHHhc
Confidence            79999999999999999999877643322222223333333333  37899999999732110         01111233


Q ss_pred             CcEEEEEEeCCChhh--HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCH
Q 028792           81 AHGIIVVYDVTDQES--FNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNV  158 (203)
Q Consensus        81 ~d~~i~v~d~~~~~s--~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  158 (203)
                      +|++++|+|++++.+  ++....|+..+.... .+.|+++++||+|+.......  +..++....+.+++++||++|.|+
T Consensus        80 ~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~--~~~~~~~~~~~~~~~~Sa~~~~gi  156 (168)
T cd01897          80 RAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-KNKPVIVVLNKIDLLTFEDLS--EIEEEEELEGEEVLKISTLTEEGV  156 (168)
T ss_pred             cCcEEEEEeCCcccccchHHHHHHHHHHHhhc-CcCCeEEEEEccccCchhhHH--HHHHhhhhccCceEEEEecccCCH
Confidence            689999999998765  355566777765443 368999999999987543332  244555555688999999999999


Q ss_pred             HHHHHHHHHHH
Q 028792          159 EQAFMAMAASI  169 (203)
Q Consensus       159 ~~~~~~l~~~~  169 (203)
                      +++|+++.+.+
T Consensus       157 ~~l~~~l~~~~  167 (168)
T cd01897         157 DEVKNKACELL  167 (168)
T ss_pred             HHHHHHHHHHh
Confidence            99999998875

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.94  E-value=1.1e-25  Score=157.90  Aligned_cols=152  Identities=26%  Similarity=0.447  Sum_probs=119.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEEe
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYD   89 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   89 (203)
                      .|+++|++|+|||||+++|.+..+...+.++.+..+.  .+..++  +.+.+||+||+..+...+..++..+|++++|+|
T Consensus         1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d   76 (159)
T cd04159           1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR--KVTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVD   76 (159)
T ss_pred             CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE--EEEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEE
Confidence            3799999999999999999999888877777765543  333444  789999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCcccCHHHHHHHH-----HHcCCCEEEEecCCCCCHHHHHH
Q 028792           90 VTDQESFNNVKQWLNEIDRY-ASENVNKLLVGNKCDLTANKVVSYETAKAFA-----DEIGIPFMETSAKSATNVEQAFM  163 (203)
Q Consensus        90 ~~~~~s~~~~~~~~~~l~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~~~~  163 (203)
                      +++++++.....++..+... ...+.|+++|+||+|+.+...  .+......     ....++++++|+++|.|++++++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  154 (159)
T cd04159          77 AADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALS--VDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLD  154 (159)
T ss_pred             CCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcC--HHHHHHHhCcccccCCceEEEEEEeccCCChHHHHH
Confidence            99998888887776665432 224689999999999865422  22222221     12236789999999999999999


Q ss_pred             HHHH
Q 028792          164 AMAA  167 (203)
Q Consensus       164 ~l~~  167 (203)
                      +|.+
T Consensus       155 ~l~~  158 (159)
T cd04159         155 WLIK  158 (159)
T ss_pred             HHhh
Confidence            9875

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd01898 Obg Obg subfamily

Probab=99.94  E-value=1.1e-25  Score=160.15  Aligned_cols=157  Identities=19%  Similarity=0.247  Sum_probs=111.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhh----hchhhhcc---ccCCc
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER----FRTITSSY---YRGAH   82 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~~---~~~~d   82 (203)
                      +|+++|.+|+|||||+++|.+........+..+.......+..++. ..+.+||+||...    .......+   +..+|
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d   80 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDG-RSFVVADIPGLIEGASEGKGLGHRFLRHIERTR   80 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCC-CeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence            5899999999999999999975542222122222222333334432 4789999999632    11222222   34699


Q ss_pred             EEEEEEeCCCh-hhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCcccCHHHHHHHHHH-cCCCEEEEecCCCCCH
Q 028792           83 GIIVVYDVTDQ-ESFNNVKQWLNEIDRYAS--ENVNKLLVGNKCDLTANKVVSYETAKAFADE-IGIPFMETSAKSATNV  158 (203)
Q Consensus        83 ~~i~v~d~~~~-~s~~~~~~~~~~l~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gi  158 (203)
                      ++++|+|++++ ++++.+..|.+.+.....  .+.|+++|+||+|+.+.... .+....+... .+.+++++||+++.|+
T Consensus        81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gi  159 (170)
T cd01898          81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEEL-FELLKELLKELWGKPVFPISALTGEGL  159 (170)
T ss_pred             EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhh-HHHHHHHHhhCCCCCEEEEecCCCCCH
Confidence            99999999998 788888888888866542  36899999999998664433 3334445555 3688999999999999


Q ss_pred             HHHHHHHHHH
Q 028792          159 EQAFMAMAAS  168 (203)
Q Consensus       159 ~~~~~~l~~~  168 (203)
                      +++|++|.+.
T Consensus       160 ~~l~~~i~~~  169 (170)
T cd01898         160 DELLRKLAEL  169 (170)
T ss_pred             HHHHHHHHhh
Confidence            9999999864

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>cd04155 Arl3 Arl3 subfamily

Probab=99.94  E-value=9.5e-25  Score=155.82  Aligned_cols=157  Identities=24%  Similarity=0.362  Sum_probs=116.2

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcE
Q 028792            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG   83 (203)
Q Consensus         4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   83 (203)
                      +....++|+++|++|+|||||+++|.+..+.. +.++.+  +....+..++  ..+.+||+||...+...+..++..+|+
T Consensus        10 ~~~~~~~v~i~G~~g~GKStLl~~l~~~~~~~-~~~t~g--~~~~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~   84 (173)
T cd04155          10 KSSEEPRILILGLDNAGKTTILKQLASEDISH-ITPTQG--FNIKTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDC   84 (173)
T ss_pred             ccCCccEEEEEccCCCCHHHHHHHHhcCCCcc-cCCCCC--cceEEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCE
Confidence            34557999999999999999999999876532 334444  3333444555  678999999998888888888999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC-----CCEEEEecCCCCC
Q 028792           84 IIVVYDVTDQESFNNVKQWLNEIDRY-ASENVNKLLVGNKCDLTANKVVSYETAKAFADEIG-----IPFMETSAKSATN  157 (203)
Q Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~g  157 (203)
                      +++|+|+++..++.....++..+... ...+.|+++++||+|+.+..  ..+++.+......     .+++++||++|+|
T Consensus        85 ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~g  162 (173)
T cd04155          85 LIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAA--PAEEIAEALNLHDLRDRTWHIQACSAKTGEG  162 (173)
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCC--CHHHHHHHcCCcccCCCeEEEEEeECCCCCC
Confidence            99999999988888777666555332 23468999999999986532  1222222211111     2478999999999


Q ss_pred             HHHHHHHHHH
Q 028792          158 VEQAFMAMAA  167 (203)
Q Consensus       158 i~~~~~~l~~  167 (203)
                      ++++|+||.+
T Consensus       163 i~~~~~~l~~  172 (173)
T cd04155         163 LQEGMNWVCK  172 (173)
T ss_pred             HHHHHHHHhc
Confidence            9999999975

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.94  E-value=9.4e-25  Score=152.86  Aligned_cols=158  Identities=34%  Similarity=0.525  Sum_probs=125.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEE
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVV   87 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (203)
                      .+||+++|.+|+|||||+++|.....+..+.++.+.++....+..++..+.+.+||+||+..+...+..++..++.++++
T Consensus         1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~   80 (161)
T TIGR00231         1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV   80 (161)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence            37999999999999999999998887777777887777777677777668899999999988888888888999999999


Q ss_pred             EeCCCh-hhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHH
Q 028792           88 YDVTDQ-ESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAM  165 (203)
Q Consensus        88 ~d~~~~-~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  165 (203)
                      +|.... .++.... .+...+......+.|+++++||.|+.... ...+....+......+++++||++|.|+.++|++|
T Consensus        81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l  159 (161)
T TIGR00231        81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV  159 (161)
T ss_pred             EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHh
Confidence            998876 5655554 56666655544478999999999986543 23333333444445789999999999999999987


Q ss_pred             H
Q 028792          166 A  166 (203)
Q Consensus       166 ~  166 (203)
                      .
T Consensus       160 ~  160 (161)
T TIGR00231       160 E  160 (161)
T ss_pred             h
Confidence            4

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd01890 LepA LepA subfamily

Probab=99.94  E-value=4.3e-25  Score=158.44  Aligned_cols=154  Identities=24%  Similarity=0.332  Sum_probs=111.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC-------CCCCCccc------cceeeEEEEEE--E---CCeEEEEEEEeCCChhhhc
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDS-------YLESYIST------IGVDFKIRTVE--Q---DGKTIKLQIWDTAGQERFR   71 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~-------~~~~~~~~------~~~~~~~~~~~--~---~~~~~~~~i~D~~g~~~~~   71 (203)
                      +|+++|.+++|||||+++|++..       +...+.++      .+.++....+.  +   ++..+.+++|||||+..+.
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   81 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS   81 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence            68999999999999999998632       11122121      12233322222  2   5667889999999999998


Q ss_pred             hhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC---CEE
Q 028792           72 TITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGI---PFM  148 (203)
Q Consensus        72 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~---~~~  148 (203)
                      ..+..++..+|++|+|+|+++..+......|....    ..+.|+++|+||+|+.+..  ..+...++++.+++   .++
T Consensus        82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~----~~~~~iiiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~  155 (179)
T cd01890          82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL----ENNLEIIPVINKIDLPSAD--PERVKQQIEDVLGLDPSEAI  155 (179)
T ss_pred             HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH----HcCCCEEEEEECCCCCcCC--HHHHHHHHHHHhCCCcccEE
Confidence            88888999999999999999876655555554322    2368999999999986432  12223455555565   489


Q ss_pred             EEecCCCCCHHHHHHHHHHHH
Q 028792          149 ETSAKSATNVEQAFMAMAASI  169 (203)
Q Consensus       149 ~~Sa~~~~gi~~~~~~l~~~~  169 (203)
                      ++||++|+|++++|++|.+.+
T Consensus       156 ~~Sa~~g~gi~~l~~~l~~~~  176 (179)
T cd01890         156 LVSAKTGLGVEDLLEAIVERI  176 (179)
T ss_pred             EeeccCCCCHHHHHHHHHhhC
Confidence            999999999999999998754

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd01878 HflX HflX subfamily

Probab=99.94  E-value=2.8e-25  Score=162.73  Aligned_cols=156  Identities=19%  Similarity=0.184  Sum_probs=113.2

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhh---------hchhhhc
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER---------FRTITSS   76 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~~   76 (203)
                      +..++|+|+|++|||||||+++|.+........+..+.+.....+..++. ..+.+||+||...         +...+ .
T Consensus        39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~  116 (204)
T cd01878          39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL-E  116 (204)
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH-H
Confidence            45689999999999999999999987643322222333333444444442 3688999999632         11111 2


Q ss_pred             cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCC
Q 028792           77 YYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSAT  156 (203)
Q Consensus        77 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  156 (203)
                      .+..+|++++|+|++++.++.....|...+......+.|+++|+||+|+.+.....     .+....+.+++++||+++.
T Consensus       117 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~-----~~~~~~~~~~~~~Sa~~~~  191 (204)
T cd01878         117 EVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE-----ERLEAGRPDAVFISAKTGE  191 (204)
T ss_pred             HHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH-----HHhhcCCCceEEEEcCCCC
Confidence            35689999999999998888777777777766554568999999999986543221     3444556789999999999


Q ss_pred             CHHHHHHHHHHH
Q 028792          157 NVEQAFMAMAAS  168 (203)
Q Consensus       157 gi~~~~~~l~~~  168 (203)
                      |+++++++|.+.
T Consensus       192 gi~~l~~~L~~~  203 (204)
T cd01878         192 GLDELLEAIEEL  203 (204)
T ss_pred             CHHHHHHHHHhh
Confidence            999999999765

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=4.4e-25  Score=152.67  Aligned_cols=159  Identities=25%  Similarity=0.420  Sum_probs=131.2

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      ...++|+++|-.++||||++++|..++.... .||++  +....+.+.+  +.+++||.+|+..++..|..++++.+++|
T Consensus        15 ~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiG--fnVE~v~ykn--~~f~vWDvGGq~k~R~lW~~Y~~~t~~lI   89 (181)
T KOG0070|consen   15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIG--FNVETVEYKN--ISFTVWDVGGQEKLRPLWKHYFQNTQGLI   89 (181)
T ss_pred             cceEEEEEEeccCCCceeeeEeeccCCcccC-CCccc--cceeEEEEcc--eEEEEEecCCCcccccchhhhccCCcEEE
Confidence            4679999999999999999999987776555 56666  6666777765  89999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHc-----CCCEEEEecCCCCCHH
Q 028792           86 VVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTANKVVSYETAKAFADEI-----GIPFMETSAKSATNVE  159 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~gi~  159 (203)
                      ||+|.+|++.+.+.+..+..+....+ ...|+++++||.|+...  ++..++.+.....     ...+..|+|.+|+|+.
T Consensus        90 fVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~a--ls~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~  167 (181)
T KOG0070|consen   90 FVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGA--LSAAEITNKLGLHSLRSRNWHIQSTCAISGEGLY  167 (181)
T ss_pred             EEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhcccc--CCHHHHHhHhhhhccCCCCcEEeeccccccccHH
Confidence            99999999999998886666655544 57999999999998754  4445544443333     3568899999999999


Q ss_pred             HHHHHHHHHHHH
Q 028792          160 QAFMAMAASIKN  171 (203)
Q Consensus       160 ~~~~~l~~~~~~  171 (203)
                      +.++||.+.+..
T Consensus       168 egl~wl~~~~~~  179 (181)
T KOG0070|consen  168 EGLDWLSNNLKK  179 (181)
T ss_pred             HHHHHHHHHHhc
Confidence            999999998764

>cd04171 SelB SelB subfamily

Probab=99.93  E-value=1.4e-24  Score=153.35  Aligned_cols=152  Identities=16%  Similarity=0.186  Sum_probs=105.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCC---CCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDS---YLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      +.|+++|.+|+|||||+++|.+..   +.....++.+.+.....+...+ ...+.+|||||++++.......+..+|+++
T Consensus         1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii   79 (164)
T cd04171           1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVL   79 (164)
T ss_pred             CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEE
Confidence            468999999999999999999642   3333333444444444444441 257899999999888776677788999999


Q ss_pred             EEEeCCC---hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc--cCHHHHHHHHHH---cCCCEEEEecCCCCC
Q 028792           86 VVYDVTD---QESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKV--VSYETAKAFADE---IGIPFMETSAKSATN  157 (203)
Q Consensus        86 ~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~--~~~~~~~~~~~~---~~~~~~~~Sa~~~~g  157 (203)
                      +|+|+++   +++...+    ..+...  ...|+++++||+|+.....  ...++..++.+.   .+.+++++||++++|
T Consensus        80 ~V~d~~~~~~~~~~~~~----~~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  153 (164)
T cd04171          80 LVVAADEGIMPQTREHL----EILELL--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEG  153 (164)
T ss_pred             EEEECCCCccHhHHHHH----HHHHHh--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcC
Confidence            9999987   3332222    222222  1248999999999865421  112334444444   357899999999999


Q ss_pred             HHHHHHHHHH
Q 028792          158 VEQAFMAMAA  167 (203)
Q Consensus       158 i~~~~~~l~~  167 (203)
                      +++++..+.+
T Consensus       154 v~~l~~~l~~  163 (164)
T cd04171         154 IEELKEYLDE  163 (164)
T ss_pred             HHHHHHHHhh
Confidence            9999998754

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.93  E-value=1.2e-24  Score=150.46  Aligned_cols=134  Identities=24%  Similarity=0.297  Sum_probs=98.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChh-----hhchhhhccccCCcEE
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE-----RFRTITSSYYRGAHGI   84 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~-----~~~~~~~~~~~~~d~~   84 (203)
                      ||+++|++|+|||||+++|.+....  +.++.+.+       +..     .+||+||..     .+.... ..++++|++
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~~-------~~~-----~~iDt~G~~~~~~~~~~~~~-~~~~~ad~v   66 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAVE-------YND-----GAIDTPGEYVENRRLYSALI-VTAADADVI   66 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCccc--cccceeEE-------EcC-----eeecCchhhhhhHHHHHHHH-HHhhcCCEE
Confidence            7999999999999999999987642  22332221       211     589999972     233332 347899999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-CEEEEecCCCCCHHHHHH
Q 028792           85 IVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGI-PFMETSAKSATNVEQAFM  163 (203)
Q Consensus        85 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~~~  163 (203)
                      ++|+|++++.++.. ..|...+      ..|+++|+||+|+.+. ....+...++++..+. +++++||++|.|++++|.
T Consensus        67 ilv~d~~~~~s~~~-~~~~~~~------~~p~ilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  138 (142)
T TIGR02528        67 ALVQSATDPESRFP-PGFASIF------VKPVIGLVTKIDLAEA-DVDIERAKELLETAGAEPIFEISSVDEQGLEALVD  138 (142)
T ss_pred             EEEecCCCCCcCCC-hhHHHhc------cCCeEEEEEeeccCCc-ccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHH
Confidence            99999999887644 2333221      2499999999998652 3455667777777775 899999999999999999


Q ss_pred             HHH
Q 028792          164 AMA  166 (203)
Q Consensus       164 ~l~  166 (203)
                      +|.
T Consensus       139 ~l~  141 (142)
T TIGR02528       139 YLN  141 (142)
T ss_pred             HHh
Confidence            874

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.92  E-value=6.8e-24  Score=164.70  Aligned_cols=159  Identities=18%  Similarity=0.204  Sum_probs=115.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhh----chhh---hccccCC
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF----RTIT---SSYYRGA   81 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----~~~~---~~~~~~~   81 (203)
                      ..|+++|.|+||||||+++|..........+.++.......+.+++ ...+.+||+||....    ..+.   ...+..+
T Consensus       158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhiera  236 (329)
T TIGR02729       158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIERT  236 (329)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHhh
Confidence            5789999999999999999997654333223333444444555443 257899999996421    1222   2335679


Q ss_pred             cEEEEEEeCCCh---hhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCC
Q 028792           82 HGIIVVYDVTDQ---ESFNNVKQWLNEIDRYAS--ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSAT  156 (203)
Q Consensus        82 d~~i~v~d~~~~---~s~~~~~~~~~~l~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  156 (203)
                      +++++|+|+++.   ++++.+..|.+++..+..  .+.|+++|+||+|+..... ..+....+.+..+.+++++||++++
T Consensus       237 d~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~vi~iSAktg~  315 (329)
T TIGR02729       237 RVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLKELKKALGKPVFPISALTGE  315 (329)
T ss_pred             CEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCcEEEEEccCCc
Confidence            999999999976   677888888888766543  4689999999999875432 2333445566667899999999999


Q ss_pred             CHHHHHHHHHHHH
Q 028792          157 NVEQAFMAMAASI  169 (203)
Q Consensus       157 gi~~~~~~l~~~~  169 (203)
                      |+++++.+|.+.+
T Consensus       316 GI~eL~~~I~~~l  328 (329)
T TIGR02729       316 GLDELLYALAELL  328 (329)
T ss_pred             CHHHHHHHHHHHh
Confidence            9999999998754

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.92  E-value=2.9e-23  Score=153.61  Aligned_cols=171  Identities=39%  Similarity=0.604  Sum_probs=138.8

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEE
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV   86 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (203)
                      ..++|+++|++|+|||||+++|..+.+...+.++.+..+........+..+.+.+||++|+.++...+..++..++++++
T Consensus         4 ~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~   83 (219)
T COG1100           4 KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILI   83 (219)
T ss_pred             ceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEE
Confidence            34899999999999999999999999999988888877777777766657889999999999999999999999999999


Q ss_pred             EEeCCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc------------ccCHHHHHHHHHHc---CCCEEEE
Q 028792           87 VYDVTDQE-SFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANK------------VVSYETAKAFADEI---GIPFMET  150 (203)
Q Consensus        87 v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~------------~~~~~~~~~~~~~~---~~~~~~~  150 (203)
                      |+|..+.. +.+....|...+........|+++++||+|+....            ....+.........   ...++++
T Consensus        84 ~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (219)
T COG1100          84 VYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLET  163 (219)
T ss_pred             EEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEe
Confidence            99999955 45556668888877765578999999999997653            22222222222222   3348999


Q ss_pred             ecC--CCCCHHHHHHHHHHHHHHHhccCC
Q 028792          151 SAK--SATNVEQAFMAMAASIKNRMASQP  177 (203)
Q Consensus       151 Sa~--~~~gi~~~~~~l~~~~~~~~~~~~  177 (203)
                      |++  .+.++.++|..+...+.+......
T Consensus       164 s~~~~~~~~v~~~~~~~~~~~~~~~~~~~  192 (219)
T COG1100         164 SAKSLTGPNVNELFKELLRKLLEEIEKLV  192 (219)
T ss_pred             ecccCCCcCHHHHHHHHHHHHHHhhhhhh
Confidence            999  999999999999999976554444

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.92  E-value=1.5e-23  Score=145.55  Aligned_cols=153  Identities=56%  Similarity=0.907  Sum_probs=121.0

Q ss_pred             EEcCCCCcHHHHHHHHhcCCC-CCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEEeCC
Q 028792           13 LIGDSGVGKSCLLLRFADDSY-LESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVT   91 (203)
Q Consensus        13 i~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~   91 (203)
                      ++|++|+|||||+++|.+... .....++. .+..............+.+||+||...+...+..++..+|++++|+|++
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~   79 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT   79 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence            589999999999999998776 44444555 6666677776667789999999999888887788899999999999999


Q ss_pred             ChhhHHHHHHHH-HHHHhhcCCCCcEEEEEeCCCCCCCcccCHHH-HHHHHHHcCCCEEEEecCCCCCHHHHHHHHH
Q 028792           92 DQESFNNVKQWL-NEIDRYASENVNKLLVGNKCDLTANKVVSYET-AKAFADEIGIPFMETSAKSATNVEQAFMAMA  166 (203)
Q Consensus        92 ~~~s~~~~~~~~-~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  166 (203)
                      ++.++.....|+ .........+.|+++++||.|+.......... .........++++++|+.++.|+.+++.+|.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  156 (157)
T cd00882          80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA  156 (157)
T ss_pred             CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence            999888888763 22333344579999999999987654433322 3344555568999999999999999999985

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.92  E-value=1e-24  Score=150.85  Aligned_cols=148  Identities=20%  Similarity=0.273  Sum_probs=105.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhc------hhhhcc--ccC
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR------TITSSY--YRG   80 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~--~~~   80 (203)
                      ++|+++|.||+|||||+|+|.+.+......|..+.+.....+...+  ..+.++|+||.-...      .....+  ...
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~   78 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK   78 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence            6899999999999999999999886655567777777777777777  678899999943221      122223  368


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHH
Q 028792           81 AHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQ  160 (203)
Q Consensus        81 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  160 (203)
                      .|++++|+|++..+.-   ..+...+.   ..+.|+++++||+|......+.. ....+.+.++++++++||++++|+++
T Consensus        79 ~D~ii~VvDa~~l~r~---l~l~~ql~---e~g~P~vvvlN~~D~a~~~g~~i-d~~~Ls~~Lg~pvi~~sa~~~~g~~~  151 (156)
T PF02421_consen   79 PDLIIVVVDATNLERN---LYLTLQLL---ELGIPVVVVLNKMDEAERKGIEI-DAEKLSERLGVPVIPVSARTGEGIDE  151 (156)
T ss_dssp             SSEEEEEEEGGGHHHH---HHHHHHHH---HTTSSEEEEEETHHHHHHTTEEE--HHHHHHHHTS-EEEEBTTTTBTHHH
T ss_pred             CCEEEEECCCCCHHHH---HHHHHHHH---HcCCCEEEEEeCHHHHHHcCCEE-CHHHHHHHhCCCEEEEEeCCCcCHHH
Confidence            9999999999875432   22222233   23799999999999865443322 35667778899999999999999999


Q ss_pred             HHHHH
Q 028792          161 AFMAM  165 (203)
Q Consensus       161 ~~~~l  165 (203)
                      +++.+
T Consensus       152 L~~~I  156 (156)
T PF02421_consen  152 LKDAI  156 (156)
T ss_dssp             HHHHH
T ss_pred             HHhhC
Confidence            98865

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.92  E-value=6.1e-24  Score=150.80  Aligned_cols=157  Identities=17%  Similarity=0.137  Sum_probs=109.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEEC-CeEEEEEEEeCCChhhhchhhhccccCCcEEEEEE
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQD-GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVY   88 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (203)
                      .|+++|.+|+|||||+++|....+.....++.+.+.....+..+ +....+.+|||||+..+...+...+..+|++++|+
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~   81 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV   81 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence            58999999999999999999877666544444444443444443 12467899999999888888888889999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccC-HHHHHHHHH------HcCCCEEEEecCCCCCHHHH
Q 028792           89 DVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVS-YETAKAFAD------EIGIPFMETSAKSATNVEQA  161 (203)
Q Consensus        89 d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~-~~~~~~~~~------~~~~~~~~~Sa~~~~gi~~~  161 (203)
                      |+++....... ..+..+..   .+.|+++|+||+|+....... .+....+..      ...++++++|+++|+|+.++
T Consensus        82 d~~~~~~~~~~-~~~~~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  157 (168)
T cd01887          82 AADDGVMPQTI-EAIKLAKA---ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDL  157 (168)
T ss_pred             ECCCCccHHHH-HHHHHHHH---cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHH
Confidence            99875321111 11222222   368999999999986432111 111111111      11368999999999999999


Q ss_pred             HHHHHHHHH
Q 028792          162 FMAMAASIK  170 (203)
Q Consensus       162 ~~~l~~~~~  170 (203)
                      +++|.+...
T Consensus       158 ~~~l~~~~~  166 (168)
T cd01887         158 LEAILLLAE  166 (168)
T ss_pred             HHHHHHhhh
Confidence            999987653

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.92  E-value=7.7e-24  Score=148.77  Aligned_cols=147  Identities=18%  Similarity=0.238  Sum_probs=110.4

Q ss_pred             EEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhch------hhhccc--cCCcEE
Q 028792           13 LIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT------ITSSYY--RGAHGI   84 (203)
Q Consensus        13 i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~--~~~d~~   84 (203)
                      ++|.+|+|||||++++.+........++.+.+.....+.+++  ..+.+|||||...+..      .+..++  ..+|++
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v   78 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI   78 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence            589999999999999998765555555555666666666766  5789999999876543      234455  489999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHH
Q 028792           85 IVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMA  164 (203)
Q Consensus        85 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  164 (203)
                      ++|+|+++++...   .+...+..   .+.|+++++||+|+.+...... ....+....+.+++++||.++.|+++++.+
T Consensus        79 i~v~d~~~~~~~~---~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~  151 (158)
T cd01879          79 VNVVDATNLERNL---YLTLQLLE---LGLPVVVALNMIDEAEKRGIKI-DLDKLSELLGVPVVPTSARKGEGIDELKDA  151 (158)
T ss_pred             EEEeeCCcchhHH---HHHHHHHH---cCCCEEEEEehhhhcccccchh-hHHHHHHhhCCCeEEEEccCCCCHHHHHHH
Confidence            9999998865432   33333332   3689999999999976544433 345677777899999999999999999999


Q ss_pred             HHHH
Q 028792          165 MAAS  168 (203)
Q Consensus       165 l~~~  168 (203)
                      |...
T Consensus       152 l~~~  155 (158)
T cd01879         152 IAEL  155 (158)
T ss_pred             HHHH
Confidence            9875

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=7.6e-24  Score=139.54  Aligned_cols=157  Identities=22%  Similarity=0.424  Sum_probs=127.9

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEE
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV   86 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (203)
                      ++++|+.+|-.++||||++.+|..+... ...||++  +....+.+.+  +.|++||.+|++..+.+|++++....++||
T Consensus        16 KE~~ilmlGLd~aGKTtiLyKLkl~~~~-~~ipTvG--FnvetVtykN--~kfNvwdvGGqd~iRplWrhYy~gtqglIF   90 (180)
T KOG0071|consen   16 KEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVG--FNVETVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGLIF   90 (180)
T ss_pred             ccceEEEEecccCCceehhhHHhcCCCc-ccccccc--eeEEEEEeee--eEEeeeeccCchhhhHHHHhhccCCceEEE
Confidence            4799999999999999999999876532 3345555  6777777766  899999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHc-----CCCEEEEecCCCCCHHH
Q 028792           87 VYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTANKVVSYETAKAFADEI-----GIPFMETSAKSATNVEQ  160 (203)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~gi~~  160 (203)
                      |+|..+.+.+++.++.+..+....+ ...|+++++||.|+...  +..+++..+.+..     +..+.+++|.+|+|+.|
T Consensus        91 V~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A--~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~e  168 (180)
T KOG0071|consen   91 VVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDA--MKPQEIQDKLELERIRDRNWYVQPSCALSGDGLKE  168 (180)
T ss_pred             EEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccc--cCHHHHHHHhccccccCCccEeeccccccchhHHH
Confidence            9999999988888875555433332 57899999999999865  5566666665443     35689999999999999


Q ss_pred             HHHHHHHHHH
Q 028792          161 AFMAMAASIK  170 (203)
Q Consensus       161 ~~~~l~~~~~  170 (203)
                      .|.||.+.+.
T Consensus       169 glswlsnn~~  178 (180)
T KOG0071|consen  169 GLSWLSNNLK  178 (180)
T ss_pred             HHHHHHhhcc
Confidence            9999988653

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.92  E-value=2.1e-23  Score=163.36  Aligned_cols=155  Identities=21%  Similarity=0.213  Sum_probs=112.4

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhh---------hchhhhc
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER---------FRTITSS   76 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~~   76 (203)
                      +..++|+++|.+|+|||||+|+|.+........+..+.++....+...+. ..+.+|||+|..+         +... ..
T Consensus       187 ~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~t-le  264 (351)
T TIGR03156       187 ADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRAT-LE  264 (351)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHHH-HH
Confidence            34589999999999999999999987654333334444555666666432 4789999999722         2221 12


Q ss_pred             cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCC
Q 028792           77 YYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSAT  156 (203)
Q Consensus        77 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  156 (203)
                      .+.++|++++|+|++++.+...+..|...+......+.|+++|+||+|+.+...     ..... ....+++++||++|.
T Consensus       265 ~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~-----v~~~~-~~~~~~i~iSAktg~  338 (351)
T TIGR03156       265 EVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPR-----IERLE-EGYPEAVFVSAKTGE  338 (351)
T ss_pred             HHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHh-----HHHHH-hCCCCEEEEEccCCC
Confidence            478899999999999998877777676666655445689999999999864321     21111 223468999999999


Q ss_pred             CHHHHHHHHHHH
Q 028792          157 NVEQAFMAMAAS  168 (203)
Q Consensus       157 gi~~~~~~l~~~  168 (203)
                      |+++++.+|.+.
T Consensus       339 GI~eL~~~I~~~  350 (351)
T TIGR03156       339 GLDLLLEAIAER  350 (351)
T ss_pred             CHHHHHHHHHhh
Confidence            999999998764

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>PRK04213 GTP-binding protein; Provisional

Probab=99.91  E-value=3.3e-24  Score=156.69  Aligned_cols=155  Identities=18%  Similarity=0.211  Sum_probs=104.5

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCC-----------hhhhch
Q 028792            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG-----------QERFRT   72 (203)
Q Consensus         4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g-----------~~~~~~   72 (203)
                      .....++|+++|.+|+|||||+++|.+..+.....++.+  .....+...    .+.+||+||           .+++..
T Consensus         5 ~~~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t--~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~   78 (201)
T PRK04213          5 RPDRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVT--RKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKD   78 (201)
T ss_pred             cCCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCcee--eCceEEeec----ceEEEeCCccccccccCHHHHHHHHH
Confidence            334678999999999999999999998776554444443  333333333    488999999           445555


Q ss_pred             hhhccc----cCCcEEEEEEeCCChhhH----H------HHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 028792           73 ITSSYY----RGAHGIIVVYDVTDQESF----N------NVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKA  138 (203)
Q Consensus        73 ~~~~~~----~~~d~~i~v~d~~~~~s~----~------~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~  138 (203)
                      .+..++    ..++++++|+|.++...+    .      .-..+...+.   ..+.|+++|+||+|+.+..   .+...+
T Consensus        79 ~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~p~iiv~NK~Dl~~~~---~~~~~~  152 (201)
T PRK04213         79 EIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR---ELGIPPIVAVNKMDKIKNR---DEVLDE  152 (201)
T ss_pred             HHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHH---HcCCCeEEEEECccccCcH---HHHHHH
Confidence            444444    346788999998653221    0      0011122222   2368999999999986543   234455


Q ss_pred             HHHHcCC---------CEEEEecCCCCCHHHHHHHHHHHHHH
Q 028792          139 FADEIGI---------PFMETSAKSATNVEQAFMAMAASIKN  171 (203)
Q Consensus       139 ~~~~~~~---------~~~~~Sa~~~~gi~~~~~~l~~~~~~  171 (203)
                      +...++.         +++++||++| |+++++++|.+.+.+
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~  193 (201)
T PRK04213        153 IAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE  193 (201)
T ss_pred             HHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence            5555554         5899999999 999999999987643

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=99.91  E-value=5.8e-24  Score=141.15  Aligned_cols=160  Identities=26%  Similarity=0.420  Sum_probs=127.2

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEE
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV   86 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (203)
                      ..+.+.++|-.++|||||+|....+.+.....|+.+  +....+.-  +.+.+.+||.||+.+++.+|..+++.+++++|
T Consensus        19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvG--fnmrk~tk--gnvtiklwD~gGq~rfrsmWerycR~v~aivY   94 (186)
T KOG0075|consen   19 EEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVG--FNMRKVTK--GNVTIKLWDLGGQPRFRSMWERYCRGVSAIVY   94 (186)
T ss_pred             heeeEEEEeeccCCcceEEEEEeeccchhhhccccc--ceeEEecc--CceEEEEEecCCCccHHHHHHHHhhcCcEEEE
Confidence            357899999999999999999999888888888887  44444444  44889999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHc-----CCCEEEEecCCCCCHHH
Q 028792           87 VYDVTDQESFNNVKQWLNEIDRY-ASENVNKLLVGNKCDLTANKVVSYETAKAFADEI-----GIPFMETSAKSATNVEQ  160 (203)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~gi~~  160 (203)
                      |+|+.|++.+...+..+..+... ...+.|+++++||.|+...  .....+.+-....     .+-.|.+|+++..+++.
T Consensus        95 ~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~A--L~~~~li~rmgL~sitdREvcC~siScke~~Nid~  172 (186)
T KOG0075|consen   95 VVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGA--LSKIALIERMGLSSITDREVCCFSISCKEKVNIDI  172 (186)
T ss_pred             EeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCccc--ccHHHHHHHhCccccccceEEEEEEEEcCCccHHH
Confidence            99999999888777755555433 3468999999999998754  3333332222222     24588999999999999


Q ss_pred             HHHHHHHHHHHH
Q 028792          161 AFMAMAASIKNR  172 (203)
Q Consensus       161 ~~~~l~~~~~~~  172 (203)
                      +.+||++.....
T Consensus       173 ~~~Wli~hsk~~  184 (186)
T KOG0075|consen  173 TLDWLIEHSKSL  184 (186)
T ss_pred             HHHHHHHHhhhh
Confidence            999999876543

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.91  E-value=4.6e-23  Score=166.03  Aligned_cols=166  Identities=18%  Similarity=0.208  Sum_probs=118.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhh----c---hhhhccccCC
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF----R---TITSSYYRGA   81 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----~---~~~~~~~~~~   81 (203)
                      ..|+|+|.||||||||+++|++.+......+.++.......+...+  ..+.+||+||....    .   ......+..+
T Consensus       160 adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhiera  237 (500)
T PRK12296        160 ADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIERC  237 (500)
T ss_pred             ceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHHhc
Confidence            5799999999999999999997654433334455555556666665  67899999995321    1   1122346789


Q ss_pred             cEEEEEEeCCC----hhhHHHHHHHHHHHHhhc-----------CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCC
Q 028792           82 HGIIVVYDVTD----QESFNNVKQWLNEIDRYA-----------SENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIP  146 (203)
Q Consensus        82 d~~i~v~d~~~----~~s~~~~~~~~~~l~~~~-----------~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~  146 (203)
                      |++++|+|+++    ++.+..+..+...+..+.           ..+.|.++|+||+|+.+.... .+.........+++
T Consensus       238 dvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el-~e~l~~~l~~~g~~  316 (500)
T PRK12296        238 AVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAREL-AEFVRPELEARGWP  316 (500)
T ss_pred             CEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHH-HHHHHHHHHHcCCe
Confidence            99999999985    335555555655554443           136899999999998654332 22233334455789


Q ss_pred             EEEEecCCCCCHHHHHHHHHHHHHHHhccCC
Q 028792          147 FMETSAKSATNVEQAFMAMAASIKNRMASQP  177 (203)
Q Consensus       147 ~~~~Sa~~~~gi~~~~~~l~~~~~~~~~~~~  177 (203)
                      ++++||++++|+++++.+|.+.+.+.+...+
T Consensus       317 Vf~ISA~tgeGLdEL~~~L~ell~~~r~~~~  347 (500)
T PRK12296        317 VFEVSAASREGLRELSFALAELVEEARAAEP  347 (500)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHhhhcccC
Confidence            9999999999999999999999988766543

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.91  E-value=1.3e-23  Score=152.80  Aligned_cols=159  Identities=16%  Similarity=0.197  Sum_probs=108.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc--CCCCCCC------------ccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhh
Q 028792            9 FKLLLIGDSGVGKSCLLLRFAD--DSYLESY------------ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTIT   74 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~   74 (203)
                      -+|+++|.+++|||||+++|+.  +.+...+            ..+.+.+.......+......+.+||+||+.++...+
T Consensus         3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~   82 (194)
T cd01891           3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV   82 (194)
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence            4799999999999999999996  4443322            1223333444444444455889999999999999999


Q ss_pred             hccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc-cCHHHHHHHHH-------HcCCC
Q 028792           75 SSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKV-VSYETAKAFAD-------EIGIP  146 (203)
Q Consensus        75 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~-~~~~~~~~~~~-------~~~~~  146 (203)
                      ..++..+|++++|+|+++.. ......++..+.   ..+.|+++++||+|+..... ...+++.++..       ..+++
T Consensus        83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (194)
T cd01891          83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKAL---ELGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFP  158 (194)
T ss_pred             HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHH---HcCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccC
Confidence            99999999999999998742 222233333332   23689999999999865322 12334444442       23678


Q ss_pred             EEEEecCCCCCHHHH------HHHHHHHHHH
Q 028792          147 FMETSAKSATNVEQA------FMAMAASIKN  171 (203)
Q Consensus       147 ~~~~Sa~~~~gi~~~------~~~l~~~~~~  171 (203)
                      ++++||++|.|+.++      +++|.+.+.+
T Consensus       159 iv~~Sa~~g~~~~~~~~~~~~~~~l~~~~~~  189 (194)
T cd01891         159 VLYASAKNGWASLNLEDPSEDLEPLFDTIIE  189 (194)
T ss_pred             EEEeehhccccccccccchhhHHHHHHHHHh
Confidence            999999999988654      4555555543

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.91  E-value=1.4e-23  Score=150.03  Aligned_cols=154  Identities=23%  Similarity=0.261  Sum_probs=106.7

Q ss_pred             EEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEEC-CeEEEEEEEeCCChhhh----chh---hhccccCCcEE
Q 028792           13 LIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQD-GKTIKLQIWDTAGQERF----RTI---TSSYYRGAHGI   84 (203)
Q Consensus        13 i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~----~~~---~~~~~~~~d~~   84 (203)
                      ++|++|||||||+++|.+........+..+.+.....+..+ +  ..+.+||+||....    ...   ....+..+|++
T Consensus         1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i   78 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDG--ARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAI   78 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCC--CeEEEEeccccchhhhcCCCccHHHHHHHhccCEE
Confidence            58999999999999999876422212222233333344444 4  56899999996321    112   12346789999


Q ss_pred             EEEEeCCCh------hhHHHHHHHHHHHHhhcC-------CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEe
Q 028792           85 IVVYDVTDQ------ESFNNVKQWLNEIDRYAS-------ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETS  151 (203)
Q Consensus        85 i~v~d~~~~------~s~~~~~~~~~~l~~~~~-------~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S  151 (203)
                      ++|+|++++      .++.....|...+.....       .+.|+++|+||+|+..................+.+++++|
T Consensus        79 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S  158 (176)
T cd01881          79 LHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPIS  158 (176)
T ss_pred             EEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEe
Confidence            999999987      467777777776654332       3689999999999976544333222334444567899999


Q ss_pred             cCCCCCHHHHHHHHHHH
Q 028792          152 AKSATNVEQAFMAMAAS  168 (203)
Q Consensus       152 a~~~~gi~~~~~~l~~~  168 (203)
                      |+++.|++++++++...
T Consensus       159 a~~~~gl~~l~~~l~~~  175 (176)
T cd01881         159 AKTEEGLDELIRAIYEL  175 (176)
T ss_pred             hhhhcCHHHHHHHHHhh
Confidence            99999999999998764

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.91  E-value=1.2e-23  Score=171.39  Aligned_cols=168  Identities=21%  Similarity=0.215  Sum_probs=117.9

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCC-CCCccccceeeEEEEEEECCeEEEEEEEeCCChh----------hhchhh
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYL-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE----------RFRTIT   74 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~~~~~~   74 (203)
                      +..++|+++|.+|+|||||+++|++.... ....++++.+.....+..++  ..+.+|||||..          .+....
T Consensus       209 ~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~--~~~~l~DTaG~~~~~~~~~~~e~~~~~~  286 (472)
T PRK03003        209 GGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGG--KTWRFVDTAGLRRRVKQASGHEYYASLR  286 (472)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECC--EEEEEEECCCccccccccchHHHHHHHH
Confidence            35699999999999999999999987643 33345555555556666776  456799999952          222222


Q ss_pred             -hccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc--CHHHHHH-HHHHcCCCEEEE
Q 028792           75 -SSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVV--SYETAKA-FADEIGIPFMET  150 (203)
Q Consensus        75 -~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~--~~~~~~~-~~~~~~~~~~~~  150 (203)
                       ..++..+|++++|+|++++.++.... ++..+.   ..+.|+++|+||+|+.+....  ..+++.. +.....++++++
T Consensus       287 ~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~---~~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~  362 (472)
T PRK03003        287 THAAIEAAEVAVVLIDASEPISEQDQR-VLSMVI---EAGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNI  362 (472)
T ss_pred             HHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHH---HcCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEE
Confidence             23568999999999999887766553 233332   247899999999999653211  1112222 222234789999


Q ss_pred             ecCCCCCHHHHHHHHHHHHHHHhccCCCC
Q 028792          151 SAKSATNVEQAFMAMAASIKNRMASQPAS  179 (203)
Q Consensus       151 Sa~~~~gi~~~~~~l~~~~~~~~~~~~~~  179 (203)
                      ||++|.|++++|..+.+.+.++..+.+.+
T Consensus       363 SAk~g~gv~~lf~~i~~~~~~~~~~i~t~  391 (472)
T PRK03003        363 SAKTGRAVDKLVPALETALESWDTRIPTG  391 (472)
T ss_pred             ECCCCCCHHHHHHHHHHHHHHhcccCCHH
Confidence            99999999999999999887766665543

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.91  E-value=9.9e-23  Score=142.77  Aligned_cols=146  Identities=22%  Similarity=0.258  Sum_probs=106.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCC-CCccccceeeEEEEEEECCeEEEEEEEeCCChhhhch--------hhhcccc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDSYLE-SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT--------ITSSYYR   79 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~   79 (203)
                      ++|+++|++|+|||||++++.+..... ...++.+.++....+..++  ..+++||+||...+..        ....++.
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~   79 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAIE   79 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence            589999999999999999999876421 2233444444445555554  6789999999654422        1234567


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHH
Q 028792           80 GAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVE  159 (203)
Q Consensus        80 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  159 (203)
                      .+|++++|+|++++.+......+..      ..+.|+++++||+|+.+....       .......+++++||+++.|+.
T Consensus        80 ~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~v~  146 (157)
T cd04164          80 EADLVLFVIDASRGLDEEDLEILEL------PADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTGEGLD  146 (157)
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHh------hcCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCCCCHH
Confidence            8999999999998777655444322      336899999999998764433       334446789999999999999


Q ss_pred             HHHHHHHHHH
Q 028792          160 QAFMAMAASI  169 (203)
Q Consensus       160 ~~~~~l~~~~  169 (203)
                      +++.+|.+.+
T Consensus       147 ~l~~~l~~~~  156 (157)
T cd04164         147 ELKEALLELA  156 (157)
T ss_pred             HHHHHHHHhh
Confidence            9999998754

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.91  E-value=1.5e-22  Score=161.02  Aligned_cols=160  Identities=19%  Similarity=0.221  Sum_probs=116.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhh----hchhhhc---cccCC
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER----FRTITSS---YYRGA   81 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~---~~~~~   81 (203)
                      ..|+++|.|+||||||+++|++.+......+.++.......+.++. ...+.+||+||...    ...+...   .+..+
T Consensus       159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhier~  237 (424)
T PRK12297        159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIERT  237 (424)
T ss_pred             CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence            3799999999999999999997664333334444444444444441 25789999999632    1122233   35669


Q ss_pred             cEEEEEEeCCCh---hhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCC
Q 028792           82 HGIIVVYDVTDQ---ESFNNVKQWLNEIDRYAS--ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSAT  156 (203)
Q Consensus        82 d~~i~v~d~~~~---~s~~~~~~~~~~l~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  156 (203)
                      +++++|+|+++.   +.++.+..|.+.+..+..  .++|+++|+||+|+...    .+....+.+..+.+++++||++++
T Consensus       238 ~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~----~e~l~~l~~~l~~~i~~iSA~tge  313 (424)
T PRK12297        238 RVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA----EENLEEFKEKLGPKVFPISALTGQ  313 (424)
T ss_pred             CEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC----HHHHHHHHHHhCCcEEEEeCCCCC
Confidence            999999999865   567777788888876643  36899999999998432    344556666666889999999999


Q ss_pred             CHHHHHHHHHHHHHHHh
Q 028792          157 NVEQAFMAMAASIKNRM  173 (203)
Q Consensus       157 gi~~~~~~l~~~~~~~~  173 (203)
                      |+++++.+|.+.+.+..
T Consensus       314 GI~eL~~~L~~~l~~~~  330 (424)
T PRK12297        314 GLDELLYAVAELLEETP  330 (424)
T ss_pred             CHHHHHHHHHHHHHhCc
Confidence            99999999998887654

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.91  E-value=6.8e-23  Score=166.98  Aligned_cols=179  Identities=22%  Similarity=0.232  Sum_probs=121.8

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCC-CCCccccceeeEEEEEEECCeEEEEEEEeCCChhh--------hchhhhcc
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFADDSYL-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER--------FRTITSSY   77 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~   77 (203)
                      ...+|+|+|.+|||||||+++|++.... ....++++.+.....+.+++  ..+.+|||||...        +......+
T Consensus        37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~  114 (472)
T PRK03003         37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNG--RRFTVVDTGGWEPDAKGLQASVAEQAEVA  114 (472)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECC--cEEEEEeCCCcCCcchhHHHHHHHHHHHH
Confidence            4479999999999999999999987643 23344455555555556666  5688999999652        33345557


Q ss_pred             ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-CEEEEecCCCC
Q 028792           78 YRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGI-PFMETSAKSAT  156 (203)
Q Consensus        78 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~  156 (203)
                      +..+|+++||+|+++..+... ..+...+..   .+.|+++|+||+|+....   .+ ..++. ..+. .++++||++|.
T Consensus       115 ~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~---~~~piilV~NK~Dl~~~~---~~-~~~~~-~~g~~~~~~iSA~~g~  185 (472)
T PRK03003        115 MRTADAVLFVVDATVGATATD-EAVARVLRR---SGKPVILAANKVDDERGE---AD-AAALW-SLGLGEPHPVSALHGR  185 (472)
T ss_pred             HHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCCccc---hh-hHHHH-hcCCCCeEEEEcCCCC
Confidence            889999999999998765432 233333432   368999999999986421   11 12221 2333 46799999999


Q ss_pred             CHHHHHHHHHHHHHHHhccCCCCCCCCCCccccCCCCCCCCC
Q 028792          157 NVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPVNQKS  198 (203)
Q Consensus       157 gi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (203)
                      |++++|++|.+.+.+....  ........+...-+.++.+||
T Consensus       186 gi~eL~~~i~~~l~~~~~~--~~~~~~~~kI~iiG~~nvGKS  225 (472)
T PRK03003        186 GVGDLLDAVLAALPEVPRV--GSASGGPRRVALVGKPNVGKS  225 (472)
T ss_pred             CcHHHHHHHHhhccccccc--ccccccceEEEEECCCCCCHH
Confidence            9999999999887542211  111234566666777766665

>TIGR00436 era GTP-binding protein Era

Probab=99.90  E-value=1.4e-22  Score=154.36  Aligned_cols=153  Identities=16%  Similarity=0.102  Sum_probs=104.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCC-ccccceeeEEEEEEECCeEEEEEEEeCCChhhhc--------hhhhccccC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDSYLESY-ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR--------TITSSYYRG   80 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--------~~~~~~~~~   80 (203)
                      +|+++|.||+|||||+|+|.+....... .+.++..........++  .++.+|||||.....        ......+..
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~--~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~   79 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGA--SQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG   79 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCC--cEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence            5899999999999999999988754322 22222222222222233  568999999964321        112345789


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-CEEEEecCCCCCHH
Q 028792           81 AHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGI-PFMETSAKSATNVE  159 (203)
Q Consensus        81 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~  159 (203)
                      +|++++|+|+++..+..  ..++..+..   .+.|+++|+||+|+...... .+....+....+. +++++||++|.|++
T Consensus        80 aDvvl~VvD~~~~~~~~--~~i~~~l~~---~~~p~ilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~v~~iSA~~g~gi~  153 (270)
T TIGR00436        80 VDLILFVVDSDQWNGDG--EFVLTKLQN---LKRPVVLTRNKLDNKFKDKL-LPLIDKYAILEDFKDIVPISALTGDNTS  153 (270)
T ss_pred             CCEEEEEEECCCCCchH--HHHHHHHHh---cCCCEEEEEECeeCCCHHHH-HHHHHHHHhhcCCCceEEEecCCCCCHH
Confidence            99999999999876653  333333332   36899999999998643221 2233444444443 79999999999999


Q ss_pred             HHHHHHHHHHH
Q 028792          160 QAFMAMAASIK  170 (203)
Q Consensus       160 ~~~~~l~~~~~  170 (203)
                      +++++|.+.+.
T Consensus       154 ~L~~~l~~~l~  164 (270)
T TIGR00436       154 FLAAFIEVHLP  164 (270)
T ss_pred             HHHHHHHHhCC
Confidence            99999988764

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.90  E-value=2.7e-22  Score=161.27  Aligned_cols=154  Identities=23%  Similarity=0.259  Sum_probs=115.8

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCC-CCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchh--------hhcc
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFADDSYL-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI--------TSSY   77 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~   77 (203)
                      ..++|+++|++|+|||||+|+|++.... ....++++.++....+.+++  ..+.+|||||...+...        ...+
T Consensus       202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~~  279 (442)
T TIGR00450       202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFKA  279 (442)
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHHH
Confidence            3489999999999999999999986532 23335555666667777777  56789999997544322        2346


Q ss_pred             ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCC
Q 028792           78 YRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATN  157 (203)
Q Consensus        78 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  157 (203)
                      +..+|++++|+|++++.+++..  |+..+.   ..+.|+++|+||+|+...      +...+.+..+.+++++||++ .|
T Consensus       280 ~~~aD~il~V~D~s~~~s~~~~--~l~~~~---~~~~piIlV~NK~Dl~~~------~~~~~~~~~~~~~~~vSak~-~g  347 (442)
T TIGR00450       280 IKQADLVIYVLDASQPLTKDDF--LIIDLN---KSKKPFILVLNKIDLKIN------SLEFFVSSKVLNSSNLSAKQ-LK  347 (442)
T ss_pred             HhhCCEEEEEEECCCCCChhHH--HHHHHh---hCCCCEEEEEECccCCCc------chhhhhhhcCCceEEEEEec-CC
Confidence            7899999999999988876654  544442   236899999999998643      12344566678899999997 69


Q ss_pred             HHHHHHHHHHHHHHHhc
Q 028792          158 VEQAFMAMAASIKNRMA  174 (203)
Q Consensus       158 i~~~~~~l~~~~~~~~~  174 (203)
                      ++++|+.|.+.+.+...
T Consensus       348 I~~~~~~L~~~i~~~~~  364 (442)
T TIGR00450       348 IKALVDLLTQKINAFYS  364 (442)
T ss_pred             HHHHHHHHHHHHHHHhc
Confidence            99999999998876543

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.90  E-value=9.5e-23  Score=164.95  Aligned_cols=166  Identities=23%  Similarity=0.227  Sum_probs=113.2

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCC-CCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchh-----------
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYL-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI-----------   73 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-----------   73 (203)
                      ...++|+++|.+++|||||+++|++.... ....+.++.+.....+..++  ..+.+|||||..+....           
T Consensus       170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~e~~~~~~  247 (429)
T TIGR03594       170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNG--KKYLLIDTAGIRRKGKVTEGVEKYSVLR  247 (429)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECC--cEEEEEECCCccccccchhhHHHHHHHH
Confidence            45689999999999999999999976532 22233444444445555555  46889999996543221           


Q ss_pred             hhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHH-HHHH----cCCCEE
Q 028792           74 TSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKA-FADE----IGIPFM  148 (203)
Q Consensus        74 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~-~~~~----~~~~~~  148 (203)
                      ....+..+|++++|+|++++.+..... ++..+   ...+.|+++|+||+|+.+.. ...++... +...    ..++++
T Consensus       248 ~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~---~~~~~~iiiv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~vi  322 (429)
T TIGR03594       248 TLKAIERADVVLLVLDATEGITEQDLR-IAGLI---LEAGKALVIVVNKWDLVKDE-KTREEFKKELRRKLPFLDFAPIV  322 (429)
T ss_pred             HHHHHHhCCEEEEEEECCCCccHHHHH-HHHHH---HHcCCcEEEEEECcccCCCH-HHHHHHHHHHHHhcccCCCCceE
Confidence            123578899999999999876654433 22222   22368999999999987221 11222222 2122    247899


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHHHhccCCC
Q 028792          149 ETSAKSATNVEQAFMAMAASIKNRMASQPA  178 (203)
Q Consensus       149 ~~Sa~~~~gi~~~~~~l~~~~~~~~~~~~~  178 (203)
                      ++||++|.|++++|+++.+.+.++..+.+.
T Consensus       323 ~~SA~~g~~v~~l~~~i~~~~~~~~~~i~t  352 (429)
T TIGR03594       323 FISALTGQGVDKLLDAIDEVYENANRRIST  352 (429)
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHHhcCcCCH
Confidence            999999999999999999988766555443

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK15494 era GTPase Era; Provisional

Probab=99.90  E-value=3.1e-22  Score=156.50  Aligned_cols=156  Identities=19%  Similarity=0.245  Sum_probs=107.3

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCC-CccccceeeEEEEEEECCeEEEEEEEeCCChhh-hchh-------hhc
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLES-YISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER-FRTI-------TSS   76 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~-------~~~   76 (203)
                      .+.++|+++|.+|||||||+|+|.+..+... ..+.++.......+..++  .++.+|||||... +..+       ...
T Consensus        50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~~  127 (339)
T PRK15494         50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAWS  127 (339)
T ss_pred             cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHHH
Confidence            4567999999999999999999998876421 112222334444455555  5789999999743 2211       112


Q ss_pred             cccCCcEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC--CCEEEEecC
Q 028792           77 YYRGAHGIIVVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIG--IPFMETSAK  153 (203)
Q Consensus        77 ~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~  153 (203)
                      .+..+|+++||+|..+  ++.... .++..+...   +.|.++|+||+|+...   ...++.+++....  ..++++||+
T Consensus       128 ~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~---~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i~~iSAk  199 (339)
T PRK15494        128 SLHSADLVLLIIDSLK--SFDDITHNILDKLRSL---NIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLLFPISAL  199 (339)
T ss_pred             HhhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc---CCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEEEEEecc
Confidence            3678999999999765  333333 344444322   4677889999998643   2345555555544  579999999


Q ss_pred             CCCCHHHHHHHHHHHHHH
Q 028792          154 SATNVEQAFMAMAASIKN  171 (203)
Q Consensus       154 ~~~gi~~~~~~l~~~~~~  171 (203)
                      +|.|++++|++|.+.+.+
T Consensus       200 tg~gv~eL~~~L~~~l~~  217 (339)
T PRK15494        200 SGKNIDGLLEYITSKAKI  217 (339)
T ss_pred             CccCHHHHHHHHHHhCCC
Confidence            999999999999886654

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.90  E-value=1.8e-22  Score=145.72  Aligned_cols=154  Identities=18%  Similarity=0.185  Sum_probs=109.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCcc----------------ccceeeEEEEEEECCeEEEEEEEeCCChhhhchh
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDSYLESYIS----------------TIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI   73 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~   73 (203)
                      +|+++|.+|+|||||+++|.+.........                ..+.......+...+  ..+.+||+||...+...
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~   78 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPD--RRVNFIDTPGHEDFSSE   78 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCC--EEEEEEeCCCcHHHHHH
Confidence            489999999999999999997765543311                122223333333433  67899999999888888


Q ss_pred             hhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc--CHHHHHHHHHH---------
Q 028792           74 TSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVV--SYETAKAFADE---------  142 (203)
Q Consensus        74 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~--~~~~~~~~~~~---------  142 (203)
                      +...+..+|++++|+|+.++.+... ..++..+..   .+.|+++++||+|+......  ..+.+.+..+.         
T Consensus        79 ~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (189)
T cd00881          79 VIRGLSVSDGAILVVDANEGVQPQT-REHLRIARE---GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEE  154 (189)
T ss_pred             HHHHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH---CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhh
Confidence            8888899999999999987654322 223333322   46899999999998753221  12233333332         


Q ss_pred             -----cCCCEEEEecCCCCCHHHHHHHHHHHH
Q 028792          143 -----IGIPFMETSAKSATNVEQAFMAMAASI  169 (203)
Q Consensus       143 -----~~~~~~~~Sa~~~~gi~~~~~~l~~~~  169 (203)
                           ...+++++||++|.|+++++.+|.+.+
T Consensus       155 ~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l  186 (189)
T cd00881         155 GTRNGLLVPIVPGSALTGIGVEELLEAIVEHL  186 (189)
T ss_pred             hcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence                 346899999999999999999998875

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.90  E-value=2e-22  Score=162.84  Aligned_cols=148  Identities=23%  Similarity=0.269  Sum_probs=111.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCC-CCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchh--------hhccc
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFADDSYL-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI--------TSSYY   78 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~   78 (203)
                      .++|+++|.+|+|||||+|+|.+.... ....+..+.++....+.+++  ..+.+|||||...+...        ....+
T Consensus       215 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~  292 (449)
T PRK05291        215 GLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREAI  292 (449)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence            489999999999999999999987642 23344555566666677776  56899999997654322        22357


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCH
Q 028792           79 RGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNV  158 (203)
Q Consensus        79 ~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  158 (203)
                      ..+|++++|+|++++.++.....|..      ..+.|+++|+||+|+.+.....        ...+.+++++||++|.|+
T Consensus       293 ~~aD~il~VvD~s~~~s~~~~~~l~~------~~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSAktg~GI  358 (449)
T PRK05291        293 EEADLVLLVLDASEPLTEEDDEILEE------LKDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISAKTGEGI  358 (449)
T ss_pred             HhCCEEEEEecCCCCCChhHHHHHHh------cCCCCcEEEEEhhhccccchhh--------hccCCceEEEEeeCCCCH
Confidence            88999999999998877665443332      3368999999999986533221        334578999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 028792          159 EQAFMAMAASIKN  171 (203)
Q Consensus       159 ~~~~~~l~~~~~~  171 (203)
                      ++++++|.+.+..
T Consensus       359 ~~L~~~L~~~l~~  371 (449)
T PRK05291        359 DELREAIKELAFG  371 (449)
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999998764

>cd01889 SelB_euk SelB subfamily

Probab=99.89  E-value=2.1e-22  Score=146.19  Aligned_cols=157  Identities=17%  Similarity=0.153  Sum_probs=101.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC----CCCC---CCccccceeeEEEEEEEC------------CeEEEEEEEeCCChhh
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADD----SYLE---SYISTIGVDFKIRTVEQD------------GKTIKLQIWDTAGQER   69 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~----~~~~---~~~~~~~~~~~~~~~~~~------------~~~~~~~i~D~~g~~~   69 (203)
                      ++|+++|++++|||||+++|...    .+..   ...+..+.+.....+.+.            +....+.+||+||+..
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~   80 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS   80 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence            58999999999999999999862    1111   111222223322222222            2357899999999866


Q ss_pred             hchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc--CHHHHHHHHH------
Q 028792           70 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVV--SYETAKAFAD------  141 (203)
Q Consensus        70 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~--~~~~~~~~~~------  141 (203)
                      +..........+|++++|+|+++.........+.  +...  .+.|+++++||+|+......  ..++..+...      
T Consensus        81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~  156 (192)
T cd01889          81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI--LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKT  156 (192)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH--cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence            5444434456789999999998754333222221  1111  25799999999998643221  1222222211      


Q ss_pred             -HcCCCEEEEecCCCCCHHHHHHHHHHHH
Q 028792          142 -EIGIPFMETSAKSATNVEQAFMAMAASI  169 (203)
Q Consensus       142 -~~~~~~~~~Sa~~~~gi~~~~~~l~~~~  169 (203)
                       ..+++++++||++|+|+++++++|.+.+
T Consensus       157 ~~~~~~vi~iSa~~g~gi~~L~~~l~~~~  185 (192)
T cd01889         157 RFKNSPIIPVSAKPGGGEAELGKDLNNLI  185 (192)
T ss_pred             CcCCCCEEEEeccCCCCHHHHHHHHHhcc
Confidence             1357899999999999999999998876

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.89  E-value=1.6e-22  Score=135.64  Aligned_cols=114  Identities=34%  Similarity=0.611  Sum_probs=87.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCC--CCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEE
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDSYL--ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVV   87 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (203)
                      ||+|+|++|||||||+++|.+....  ....+..+.++.............+.+||++|.+.+...+..++..+|++++|
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv   80 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV   80 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence            7999999999999999999988776  12223344445555566666666799999999988888777789999999999


Q ss_pred             EeCCChhhHHHHHHH---HHHHHhhcCCCCcEEEEEeCCC
Q 028792           88 YDVTDQESFNNVKQW---LNEIDRYASENVNKLLVGNKCD  124 (203)
Q Consensus        88 ~d~~~~~s~~~~~~~---~~~l~~~~~~~~p~iiv~nK~D  124 (203)
                      ||+++++++..+..+   +..+.... .+.|+++|+||.|
T Consensus        81 ~D~s~~~s~~~~~~~~~~l~~~~~~~-~~~piilv~nK~D  119 (119)
T PF08477_consen   81 YDLSDPESLEYLSQLLKWLKNIRKRD-KNIPIILVGNKSD  119 (119)
T ss_dssp             EECCGHHHHHHHHHHHHHHHHHHHHS-SCSEEEEEEE-TC
T ss_pred             EcCCChHHHHHHHHHHHHHHHHHccC-CCCCEEEEEeccC
Confidence            999999999988665   44444433 3599999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=99.89  E-value=1.4e-21  Score=130.71  Aligned_cols=167  Identities=23%  Similarity=0.368  Sum_probs=136.8

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhcCCCC--CCCccccceeeEEEEEE-ECCeEEEEEEEeCCChhhh-chhhhcccc
Q 028792            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYL--ESYISTIGVDFKIRTVE-QDGKTIKLQIWDTAGQERF-RTITSSYYR   79 (203)
Q Consensus         4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~i~D~~g~~~~-~~~~~~~~~   79 (203)
                      .-.+..+|+++|..++|||++++.|+.+...  ..+.+|++.. +...+. ..+-.-.++++||.|...+ ..+.+++++
T Consensus         5 kmGk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDi-Y~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q   83 (198)
T KOG3883|consen    5 KMGKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDI-YVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQ   83 (198)
T ss_pred             hhCcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhh-eeEeeecCCChhheEEEeecccccCchhhhhHhHhc
Confidence            3456789999999999999999999854432  3445666533 333333 3444456899999997766 667788999


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCH
Q 028792           80 GAHGIIVVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNV  158 (203)
Q Consensus        80 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  158 (203)
                      -+|++++||+..|++||..+..+...|.+... ...|+++++||.|..++..+..+-+..|++...+..+++++.+...+
T Consensus        84 ~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL  163 (198)
T KOG3883|consen   84 FADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSL  163 (198)
T ss_pred             cCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhh
Confidence            99999999999999999988887777776655 46999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 028792          159 EQAFMAMAASIKN  171 (203)
Q Consensus       159 ~~~~~~l~~~~~~  171 (203)
                      -+-|..|...+.+
T Consensus       164 ~epf~~l~~rl~~  176 (198)
T KOG3883|consen  164 YEPFTYLASRLHQ  176 (198)
T ss_pred             hhHHHHHHHhccC
Confidence            9999999887754

>cd01894 EngA1 EngA1 subfamily

Probab=99.89  E-value=2.7e-22  Score=140.65  Aligned_cols=146  Identities=19%  Similarity=0.145  Sum_probs=100.7

Q ss_pred             EEEcCCCCcHHHHHHHHhcCCCC-CCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhch--------hhhccccCCc
Q 028792           12 LLIGDSGVGKSCLLLRFADDSYL-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT--------ITSSYYRGAH   82 (203)
Q Consensus        12 ~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~~~d   82 (203)
                      +++|.+|+|||||+++|.+.... ....+..+.+........++  ..+.+||+||...+..        .....+..+|
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d   78 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD   78 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence            47999999999999999976422 11223333334444555555  6789999999776433        3345678899


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-CEEEEecCCCCCHHHH
Q 028792           83 GIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGI-PFMETSAKSATNVEQA  161 (203)
Q Consensus        83 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~  161 (203)
                      ++++|+|+.+..+.... .+...+..   .+.|+++|+||+|+.+....     .......+. +++++|++++.|++++
T Consensus        79 ~ii~v~d~~~~~~~~~~-~~~~~~~~---~~~piiiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gv~~l  149 (157)
T cd01894          79 VILFVVDGREGLTPADE-EIAKYLRK---SKKPVILVVNKVDNIKEEDE-----AAEFYSLGFGEPIPISAEHGRGIGDL  149 (157)
T ss_pred             EEEEEEeccccCCccHH-HHHHHHHh---cCCCEEEEEECcccCChHHH-----HHHHHhcCCCCeEEEecccCCCHHHH
Confidence            99999999875443322 22222322   25899999999998754322     222334555 7899999999999999


Q ss_pred             HHHHHHH
Q 028792          162 FMAMAAS  168 (203)
Q Consensus       162 ~~~l~~~  168 (203)
                      |++|.+.
T Consensus       150 ~~~l~~~  156 (157)
T cd01894         150 LDAILEL  156 (157)
T ss_pred             HHHHHhh
Confidence            9999875

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK11058 GTPase HflX; Provisional

Probab=99.89  E-value=5.7e-22  Score=158.61  Aligned_cols=158  Identities=20%  Similarity=0.232  Sum_probs=111.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhh--chhhh------cccc
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF--RTITS------SYYR   79 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~--~~~~~------~~~~   79 (203)
                      ..+|+++|.+|+|||||+|+|.+........+..+.+.....+.+.+. ..+.+|||+|..+.  ...+.      ..+.
T Consensus       197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~  275 (426)
T PRK11058        197 VPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETR  275 (426)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhh
Confidence            368999999999999999999987654333334444555555555442 25789999997331  22222      2358


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCC-EEEEecCCCCCH
Q 028792           80 GAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIP-FMETSAKSATNV  158 (203)
Q Consensus        80 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi  158 (203)
                      .+|++++|+|++++.++..+..|...+......+.|+++|+||+|+.....   ....  ....+.+ ++.+||++|.|+
T Consensus       276 ~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~---~~~~--~~~~~~~~~v~ISAktG~GI  350 (426)
T PRK11058        276 QATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE---PRID--RDEENKPIRVWLSAQTGAGI  350 (426)
T ss_pred             cCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchh---HHHH--HHhcCCCceEEEeCCCCCCH
Confidence            899999999999988877776665555555445789999999999864311   1111  1123445 589999999999


Q ss_pred             HHHHHHHHHHHHH
Q 028792          159 EQAFMAMAASIKN  171 (203)
Q Consensus       159 ~~~~~~l~~~~~~  171 (203)
                      ++++++|.+.+..
T Consensus       351 deL~e~I~~~l~~  363 (426)
T PRK11058        351 PLLFQALTERLSG  363 (426)
T ss_pred             HHHHHHHHHHhhh
Confidence            9999999998854

>KOG1673 consensus Ras GTPases [General function prediction only]

Probab=99.89  E-value=4.8e-22  Score=133.28  Aligned_cols=173  Identities=26%  Similarity=0.480  Sum_probs=149.2

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      .-.+||.++|++..|||||+-++.++.+...+..+.+..+..+.+.+.+-.+.+.|||.+|++++..+......++-+++
T Consensus        18 ~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIl   97 (205)
T KOG1673|consen   18 LVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAIL   97 (205)
T ss_pred             ceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEE
Confidence            34689999999999999999999999998888888999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccC-----HHHHHHHHHHcCCCEEEEecCCCCCHHH
Q 028792           86 VVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVS-----YETAKAFADEIGIPFMETSAKSATNVEQ  160 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~-----~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  160 (203)
                      |+||++.+.++..+..|+++.+.......| |+|++|.|..-.-...     ....+.+++-.+++.+.||+..+.++..
T Consensus        98 FmFDLt~r~TLnSi~~WY~QAr~~NktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~K  176 (205)
T KOG1673|consen   98 FMFDLTRRSTLNSIKEWYRQARGLNKTAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQK  176 (205)
T ss_pred             EEEecCchHHHHHHHHHHHHHhccCCccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHHH
Confidence            999999999999999999999888776666 5689999964321111     1235667888899999999999999999


Q ss_pred             HHHHHHHHHHHHhccCCCC
Q 028792          161 AFMAMAASIKNRMASQPAS  179 (203)
Q Consensus       161 ~~~~l~~~~~~~~~~~~~~  179 (203)
                      +|.-+...+.+..-..|..
T Consensus       177 IFK~vlAklFnL~~ti~~~  195 (205)
T KOG1673|consen  177 IFKIVLAKLFNLPWTIPEI  195 (205)
T ss_pred             HHHHHHHHHhCCceecccc
Confidence            9999998888765555543

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.89  E-value=1.5e-21  Score=154.57  Aligned_cols=162  Identities=19%  Similarity=0.206  Sum_probs=116.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhc-------hhhhccccCC
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR-------TITSSYYRGA   81 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~~~~~~~~~   81 (203)
                      ..|+|+|.||||||||+|+|++.+......+.++.......+...+ ...+.++|+||...-.       ......+..+
T Consensus       160 adValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~ra  238 (390)
T PRK12298        160 ADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFLKHLERC  238 (390)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCC-CcEEEEEeCCCccccccchhhHHHHHHHHHHhC
Confidence            3799999999999999999997665433344444445555555442 1358899999964311       1122347889


Q ss_pred             cEEEEEEeCC---ChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC--CCEEEEecCC
Q 028792           82 HGIIVVYDVT---DQESFNNVKQWLNEIDRYAS--ENVNKLLVGNKCDLTANKVVSYETAKAFADEIG--IPFMETSAKS  154 (203)
Q Consensus        82 d~~i~v~d~~---~~~s~~~~~~~~~~l~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~  154 (203)
                      |++++|+|++   +.+.+..+..|++.+..+..  .+.|+++|+||+|+.....+ .+.+.++.+..+  .+++++||++
T Consensus       239 dvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el-~~~l~~l~~~~~~~~~Vi~ISA~t  317 (390)
T PRK12298        239 RVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEA-EERAKAIVEALGWEGPVYLISAAS  317 (390)
T ss_pred             CEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHH-HHHHHHHHHHhCCCCCEEEEECCC
Confidence            9999999998   45567777778777766532  35899999999998654332 233444555444  4799999999


Q ss_pred             CCCHHHHHHHHHHHHHHH
Q 028792          155 ATNVEQAFMAMAASIKNR  172 (203)
Q Consensus       155 ~~gi~~~~~~l~~~~~~~  172 (203)
                      +.|+++++++|.+.+.+.
T Consensus       318 g~GIdeLl~~I~~~L~~~  335 (390)
T PRK12298        318 GLGVKELCWDLMTFIEEN  335 (390)
T ss_pred             CcCHHHHHHHHHHHhhhC
Confidence            999999999999988654

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.89  E-value=6.2e-22  Score=139.19  Aligned_cols=142  Identities=23%  Similarity=0.266  Sum_probs=99.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChh----hhchhhhccccCCcEEE
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE----RFRTITSSYYRGAHGII   85 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----~~~~~~~~~~~~~d~~i   85 (203)
                      +|+++|.+|+|||||+++|.+....  ...+.       .+.+...    .+||+||..    ++.......+..+|+++
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~~~~~--~~~~~-------~v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il   69 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQGNYTL--ARKTQ-------AVEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLI   69 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCcc--Cccce-------EEEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEE
Confidence            7999999999999999998864311  11111       1222221    269999962    22222223468999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC--CEEEEecCCCCCHHHHHH
Q 028792           86 VVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGI--PFMETSAKSATNVEQAFM  163 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~--~~~~~Sa~~~~gi~~~~~  163 (203)
                      +|+|+++.+++.  ..|+..+    ..+.|+++++||+|+..   ...+...+++...+.  +++++||++|+|++++|+
T Consensus        70 ~v~d~~~~~s~~--~~~~~~~----~~~~~ii~v~nK~Dl~~---~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~  140 (158)
T PRK15467         70 YVHGANDPESRL--PAGLLDI----GVSKRQIAVISKTDMPD---ADVAATRKLLLETGFEEPIFELNSHDPQSVQQLVD  140 (158)
T ss_pred             EEEeCCCccccc--CHHHHhc----cCCCCeEEEEEccccCc---ccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHH
Confidence            999999877642  2232222    12578999999999854   234566677777774  899999999999999999


Q ss_pred             HHHHHHHHHh
Q 028792          164 AMAASIKNRM  173 (203)
Q Consensus       164 ~l~~~~~~~~  173 (203)
                      +|.+.+.+..
T Consensus       141 ~l~~~~~~~~  150 (158)
T PRK15467        141 YLASLTKQEE  150 (158)
T ss_pred             HHHHhchhhh
Confidence            9988775443

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.89  E-value=1.3e-21  Score=161.88  Aligned_cols=154  Identities=18%  Similarity=0.203  Sum_probs=113.0

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      .+..+|+++|++++|||||+++|.+..+.....++++.+.....+.+++. ..+.+|||||+..|..++...+..+|++|
T Consensus        85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaI  163 (587)
T TIGR00487        85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVV  163 (587)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEE
Confidence            46689999999999999999999988776655555555555555655442 26899999999999988888899999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHc-------C--CCEEEEecCCCC
Q 028792           86 VVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEI-------G--IPFMETSAKSAT  156 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~-------~--~~~~~~Sa~~~~  156 (203)
                      +|+|+++.......    ..+......+.|+++++||+|+...   ..+.+.+.....       +  .+++++||++|+
T Consensus       164 LVVda~dgv~~qT~----e~i~~~~~~~vPiIVviNKiDl~~~---~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGe  236 (587)
T TIGR00487       164 LVVAADDGVMPQTI----EAISHAKAANVPIIVAINKIDKPEA---NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGD  236 (587)
T ss_pred             EEEECCCCCCHhHH----HHHHHHHHcCCCEEEEEECcccccC---CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCC
Confidence            99999864221111    1122222346899999999998642   223333333222       2  479999999999


Q ss_pred             CHHHHHHHHHH
Q 028792          157 NVEQAFMAMAA  167 (203)
Q Consensus       157 gi~~~~~~l~~  167 (203)
                      |+++++++|..
T Consensus       237 GI~eLl~~I~~  247 (587)
T TIGR00487       237 GIDELLDMILL  247 (587)
T ss_pred             ChHHHHHhhhh
Confidence            99999999874

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>cd01895 EngA2 EngA2 subfamily

Probab=99.89  E-value=1.8e-21  Score=138.42  Aligned_cols=155  Identities=25%  Similarity=0.250  Sum_probs=103.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCC-CCccccceeeEEEEEEECCeEEEEEEEeCCChhhhch-----------hhh
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFADDSYLE-SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT-----------ITS   75 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-----------~~~   75 (203)
                      .++|+++|.+|+|||||+++|++..... ...+..+.......+..++  ..+.+||+||..+...           ...
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~   79 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDG--KKYTLIDTAGIRRKGKVEEGIEKYSVLRTL   79 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECC--eeEEEEECCCCccccchhccHHHHHHHHHH
Confidence            5799999999999999999999865322 2223333333334445555  4578999999643211           112


Q ss_pred             ccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHH-HHHHc----CCCEEEE
Q 028792           76 SYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKA-FADEI----GIPFMET  150 (203)
Q Consensus        76 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~-~~~~~----~~~~~~~  150 (203)
                      ..+..+|++++|+|++++.+..... +...+.   ..+.|+++++||+|+........+...+ +.+..    ..+++++
T Consensus        80 ~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~---~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (174)
T cd01895          80 KAIERADVVLLVIDATEGITEQDLR-IAGLIL---EEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFI  155 (174)
T ss_pred             HHHhhcCeEEEEEeCCCCcchhHHH-HHHHHH---hcCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEE
Confidence            3457899999999999876644332 222222   2368999999999987653222222222 22222    3689999


Q ss_pred             ecCCCCCHHHHHHHHHHH
Q 028792          151 SAKSATNVEQAFMAMAAS  168 (203)
Q Consensus       151 Sa~~~~gi~~~~~~l~~~  168 (203)
                      ||++++|++++++++.+.
T Consensus       156 Sa~~~~~i~~~~~~l~~~  173 (174)
T cd01895         156 SALTGQGVDKLFDAIDEV  173 (174)
T ss_pred             eccCCCCHHHHHHHHHHh
Confidence            999999999999998764

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.88  E-value=2.1e-21  Score=141.20  Aligned_cols=159  Identities=19%  Similarity=0.186  Sum_probs=105.0

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCh----------hhhchhh
Q 028792            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ----------ERFRTIT   74 (203)
Q Consensus         5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~----------~~~~~~~   74 (203)
                      .+..++|+++|.+|+|||||+++|.+..+.....++.+.+........   ...+.+||+||.          ..+....
T Consensus        21 ~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~~   97 (196)
T PRK00454         21 PDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKLI   97 (196)
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHHH
Confidence            456789999999999999999999987644443344433333332222   257899999994          2333333


Q ss_pred             hccccC---CcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccC--HHHHHHHHHHcCCCEEE
Q 028792           75 SSYYRG---AHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVS--YETAKAFADEIGIPFME  149 (203)
Q Consensus        75 ~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~  149 (203)
                      ..++..   .+++++++|.+++.+.... .+...+.   ..+.|+++++||+|+.+.....  .+.+.+.......++++
T Consensus        98 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~---~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~  173 (196)
T PRK00454         98 EEYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLK---EYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVIL  173 (196)
T ss_pred             HHHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHH---HcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEE
Confidence            444443   4688889998765443221 1112222   2368999999999986543221  22344444444689999


Q ss_pred             EecCCCCCHHHHHHHHHHHHH
Q 028792          150 TSAKSATNVEQAFMAMAASIK  170 (203)
Q Consensus       150 ~Sa~~~~gi~~~~~~l~~~~~  170 (203)
                      +||++++|++++++.|.+.+.
T Consensus       174 ~Sa~~~~gi~~l~~~i~~~~~  194 (196)
T PRK00454        174 FSSLKKQGIDELRAAIAKWLA  194 (196)
T ss_pred             EEcCCCCCHHHHHHHHHHHhc
Confidence            999999999999999987764

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.88  E-value=3.1e-21  Score=160.22  Aligned_cols=157  Identities=21%  Similarity=0.309  Sum_probs=113.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCC-------CCCCCcc------ccceeeEEEE--EEE---CCeEEEEEEEeCCChhh
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFADDS-------YLESYIS------TIGVDFKIRT--VEQ---DGKTIKLQIWDTAGQER   69 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~~~-------~~~~~~~------~~~~~~~~~~--~~~---~~~~~~~~i~D~~g~~~   69 (203)
                      .-+|+++|+.++|||||+++|+...       +...+..      ..+.++....  +.+   ++..+.+++|||||+..
T Consensus         3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d   82 (595)
T TIGR01393         3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD   82 (595)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence            4589999999999999999998642       1111111      1133333322  323   45668999999999999


Q ss_pred             hchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC---C
Q 028792           70 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGI---P  146 (203)
Q Consensus        70 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~---~  146 (203)
                      +...+...+..+|++|+|+|+++..+......|...+.    .+.|+++|+||+|+....  ..+...++...++.   .
T Consensus        83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~ipiIiViNKiDl~~~~--~~~~~~el~~~lg~~~~~  156 (595)
T TIGR01393        83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE----NDLEIIPVINKIDLPSAD--PERVKKEIEEVIGLDASE  156 (595)
T ss_pred             HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cCCCEEEEEECcCCCccC--HHHHHHHHHHHhCCCcce
Confidence            98888899999999999999998766555555544332    367999999999986432  12223445555555   4


Q ss_pred             EEEEecCCCCCHHHHHHHHHHHHH
Q 028792          147 FMETSAKSATNVEQAFMAMAASIK  170 (203)
Q Consensus       147 ~~~~Sa~~~~gi~~~~~~l~~~~~  170 (203)
                      ++++||++|.|++++|++|.+.+.
T Consensus       157 vi~vSAktG~GI~~Lle~I~~~lp  180 (595)
T TIGR01393       157 AILASAKTGIGIEEILEAIVKRVP  180 (595)
T ss_pred             EEEeeccCCCCHHHHHHHHHHhCC
Confidence            899999999999999999988663

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.87  E-value=2.7e-21  Score=156.51  Aligned_cols=176  Identities=21%  Similarity=0.237  Sum_probs=117.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCC-CCccccceeeEEEEEEECCeEEEEEEEeCCCh--------hhhchhhhccccC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDSYLE-SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ--------ERFRTITSSYYRG   80 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~--------~~~~~~~~~~~~~   80 (203)
                      +|+++|.+|||||||+|+|.+..... ...+..+.+.....+.+++  ..+.+|||||.        ..+.......+..
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~   78 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG--REFILIDTGGIEEDDDGLDKQIREQAEIAIEE   78 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC--eEEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence            58999999999999999999876422 2234444455555666666  56899999995        3344455667899


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-CEEEEecCCCCCHH
Q 028792           81 AHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGI-PFMETSAKSATNVE  159 (203)
Q Consensus        81 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~  159 (203)
                      +|++++|+|+.+..+... ..+...+..   .+.|+++|+||+|+......    ..+ +..++. +++++||.+|.|++
T Consensus        79 ad~vl~vvD~~~~~~~~d-~~i~~~l~~---~~~piilVvNK~D~~~~~~~----~~~-~~~lg~~~~~~vSa~~g~gv~  149 (429)
T TIGR03594        79 ADVILFVVDGREGLTPED-EEIAKWLRK---SGKPVILVANKIDGKKEDAV----AAE-FYSLGFGEPIPISAEHGRGIG  149 (429)
T ss_pred             CCEEEEEEeCCCCCCHHH-HHHHHHHHH---hCCCEEEEEECccCCccccc----HHH-HHhcCCCCeEEEeCCcCCChH
Confidence            999999999987543222 122222332   26899999999998654321    122 335565 79999999999999


Q ss_pred             HHHHHHHHHHHHHhccCCCCCCCCCCccccCCCCCCCCC
Q 028792          160 QAFMAMAASIKNRMASQPASNNARPPTVQIRGQPVNQKS  198 (203)
Q Consensus       160 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (203)
                      ++++++.+.+......  ........+...-+.++.+||
T Consensus       150 ~ll~~i~~~l~~~~~~--~~~~~~~~~v~ivG~~~~GKS  186 (429)
T TIGR03594       150 DLLDAILELLPEEEEE--EEEEDGPIKIAIIGRPNVGKS  186 (429)
T ss_pred             HHHHHHHHhcCccccc--ccccCCceEEEEECCCCCCHH
Confidence            9999998876432211  111233345555566655554

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.87  E-value=3.8e-21  Score=138.06  Aligned_cols=148  Identities=18%  Similarity=0.209  Sum_probs=96.7

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChh----------hhchhh
Q 028792            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE----------RFRTIT   74 (203)
Q Consensus         5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~~~~~~   74 (203)
                      ....++|+++|.+|+|||||+++|.+..+.....++.+.+.....+..++   .+.+||+||..          .+....
T Consensus        15 ~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~   91 (179)
T TIGR03598        15 PDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKLI   91 (179)
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHHH
Confidence            46778999999999999999999998764333333333333333333333   58899999942          233333


Q ss_pred             hcccc---CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc--cCHHHHHHHHHHcC--CCE
Q 028792           75 SSYYR---GAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKV--VSYETAKAFADEIG--IPF  147 (203)
Q Consensus        75 ~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~--~~~  147 (203)
                      ..++.   .+|++++|+|++++.+.... .++..+.   ..+.|+++++||+|+.....  ...+++++.....+  .++
T Consensus        92 ~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~---~~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v  167 (179)
T TIGR03598        92 EEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLR---ERGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSV  167 (179)
T ss_pred             HHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHH---HcCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCce
Confidence            33443   46899999999875543333 2223332   23689999999999865322  22344455555543  489


Q ss_pred             EEEecCCCCCHH
Q 028792          148 METSAKSATNVE  159 (203)
Q Consensus       148 ~~~Sa~~~~gi~  159 (203)
                      +++||++|+|++
T Consensus       168 ~~~Sa~~g~gi~  179 (179)
T TIGR03598       168 QLFSSLKKTGID  179 (179)
T ss_pred             EEEECCCCCCCC
Confidence            999999999973

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]

Probab=99.87  E-value=8.2e-24  Score=145.84  Aligned_cols=192  Identities=34%  Similarity=0.569  Sum_probs=159.9

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeE-EEEEEEeCCChhhhchhhhccccCCc
Q 028792            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKT-IKLQIWDTAGQERFRTITSSYYRGAH   82 (203)
Q Consensus         4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~D~~g~~~~~~~~~~~~~~~d   82 (203)
                      ..+..++++|+|.-|+|||+++++++...++..|..+++.++......++..+ +++.+||+.|++++..+..-+++.+.
T Consensus        21 kr~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~  100 (229)
T KOG4423|consen   21 KREHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAH  100 (229)
T ss_pred             hhhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCc
Confidence            34678999999999999999999999999999999999998888888776654 67899999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhhcC----CCCcEEEEEeCCCCCCCcccC-HHHHHHHHHHcCC-CEEEEecCCCC
Q 028792           83 GIIVVYDVTDQESFNNVKQWLNEIDRYAS----ENVNKLLVGNKCDLTANKVVS-YETAKAFADEIGI-PFMETSAKSAT  156 (203)
Q Consensus        83 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~----~~~p~iiv~nK~D~~~~~~~~-~~~~~~~~~~~~~-~~~~~Sa~~~~  156 (203)
                      +.++|||++..-+|+....|.+.+.....    ...|+++..||+|+....... .....++.+.++. .++++|++.+.
T Consensus       101 ~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenk  180 (229)
T KOG4423|consen  101 GAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENK  180 (229)
T ss_pred             ceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeecccccc
Confidence            99999999999999999999999855422    246779999999986543333 4567788888884 79999999999


Q ss_pred             CHHHHHHHHHHHHHHHhccCCCCCCCCCCccccCCCCCC
Q 028792          157 NVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPVN  195 (203)
Q Consensus       157 gi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (203)
                      +++|+-..|++.+...-.+.+.+...+...+..+-.+..
T Consensus       181 ni~Ea~r~lVe~~lvnd~q~~~s~~~~~~~~~l~~~~~s  219 (229)
T KOG4423|consen  181 NIPEAQRELVEKILVNDEQPIKSSAVDGDKINLRLMQPS  219 (229)
T ss_pred             ChhHHHHHHHHHHHhhccCCcccccccccccCccccCcc
Confidence            999999999999998887766666555555544444433

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.87  E-value=3.7e-21  Score=155.93  Aligned_cols=174  Identities=22%  Similarity=0.231  Sum_probs=116.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCC-CCCccccceeeEEEEEEECCeEEEEEEEeCCChhh--------hchhhhcccc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDSYL-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER--------FRTITSSYYR   79 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~~   79 (203)
                      ++|+++|.+|||||||+++|.+.... ....+..+.+.....+.+++  ..+.+|||||...        +.......+.
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~   79 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE   79 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence            58999999999999999999987642 22234444555556666766  7789999999765        2233455678


Q ss_pred             CCcEEEEEEeCCChhhHH--HHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-CEEEEecCCCC
Q 028792           80 GAHGIIVVYDVTDQESFN--NVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGI-PFMETSAKSAT  156 (203)
Q Consensus        80 ~~d~~i~v~d~~~~~s~~--~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~  156 (203)
                      .+|++++|+|+.++.+..  .+..|+   ..   .+.|+++|+||+|+.+.    .+...++ ...+. .++++||++|.
T Consensus        80 ~ad~il~vvd~~~~~~~~~~~~~~~l---~~---~~~piilv~NK~D~~~~----~~~~~~~-~~lg~~~~~~iSa~~g~  148 (435)
T PRK00093         80 EADVILFVVDGRAGLTPADEEIAKIL---RK---SNKPVILVVNKVDGPDE----EADAYEF-YSLGLGEPYPISAEHGR  148 (435)
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHHH---HH---cCCcEEEEEECccCccc----hhhHHHH-HhcCCCCCEEEEeeCCC
Confidence            999999999998754432  222332   22   26899999999996531    1223333 34455 48999999999


Q ss_pred             CHHHHHHHHHHHHHHHhccCCCCCCCCCCccccCCCCCCCCC
Q 028792          157 NVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPVNQKS  198 (203)
Q Consensus       157 gi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (203)
                      |++++++++.......   ...............+.++.+||
T Consensus       149 gv~~l~~~I~~~~~~~---~~~~~~~~~~~v~ivG~~n~GKS  187 (435)
T PRK00093        149 GIGDLLDAILEELPEE---EEEDEEDEPIKIAIIGRPNVGKS  187 (435)
T ss_pred             CHHHHHHHHHhhCCcc---ccccccccceEEEEECCCCCCHH
Confidence            9999999998732211   11111233455556666665554

>PRK00089 era GTPase Era; Reviewed

Probab=99.87  E-value=6.2e-21  Score=147.01  Aligned_cols=158  Identities=18%  Similarity=0.149  Sum_probs=104.5

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCc-cccceeeEEEEEEECCeEEEEEEEeCCChhhh--------chhhhcc
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYI-STIGVDFKIRTVEQDGKTIKLQIWDTAGQERF--------RTITSSY   77 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~--------~~~~~~~   77 (203)
                      +.-.|+++|.||||||||+|+|++........ +.++..........+  ..++.++||||....        .......
T Consensus         4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~--~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~   81 (292)
T PRK00089          4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTED--DAQIIFVDTPGIHKPKRALNRAMNKAAWSS   81 (292)
T ss_pred             eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcC--CceEEEEECCCCCCchhHHHHHHHHHHHHH
Confidence            44579999999999999999999877643322 222211111122222  268999999996432        1223345


Q ss_pred             ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC-CCEEEEecCCCC
Q 028792           78 YRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIG-IPFMETSAKSAT  156 (203)
Q Consensus        78 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~  156 (203)
                      +..+|++++|+|+++..+- .....+..+.   ..+.|+++|+||+|+.............+....+ .+++++||+++.
T Consensus        82 ~~~~D~il~vvd~~~~~~~-~~~~i~~~l~---~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~  157 (292)
T PRK00089         82 LKDVDLVLFVVDADEKIGP-GDEFILEKLK---KVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGD  157 (292)
T ss_pred             HhcCCEEEEEEeCCCCCCh-hHHHHHHHHh---hcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCC
Confidence            6889999999999873221 1122222222   2358999999999997432222334445554444 679999999999


Q ss_pred             CHHHHHHHHHHHHH
Q 028792          157 NVEQAFMAMAASIK  170 (203)
Q Consensus       157 gi~~~~~~l~~~~~  170 (203)
                      |+++++++|.+.+.
T Consensus       158 gv~~L~~~L~~~l~  171 (292)
T PRK00089        158 NVDELLDVIAKYLP  171 (292)
T ss_pred             CHHHHHHHHHHhCC
Confidence            99999999988764

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.87  E-value=2.8e-21  Score=151.25  Aligned_cols=179  Identities=21%  Similarity=0.175  Sum_probs=126.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCC-CCccccceeeEEEEEEECCeEEEEEEEeCCChhhh---------chhhhccc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDSYLE-SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF---------RTITSSYY   78 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~~~~   78 (203)
                      ..|+++|.||+|||||+|+|.+.+..- +..|.++.+.......+.+  ..|.++||+|.+..         .......+
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~--~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai   81 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLG--REFILIDTGGLDDGDEDELQELIREQALIAI   81 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcC--ceEEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence            579999999999999999999887654 3346677777777777777  56899999995532         23345567


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC-CCEEEEecCCCCC
Q 028792           79 RGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIG-IPFMETSAKSATN  157 (203)
Q Consensus        79 ~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~g  157 (203)
                      ..||+++||+|....-+-.+ ....+.++   ..++|+++|+||+|-...    .+...+| -.++ ..++++||..|.|
T Consensus        82 ~eADvilfvVD~~~Git~~D-~~ia~~Lr---~~~kpviLvvNK~D~~~~----e~~~~ef-yslG~g~~~~ISA~Hg~G  152 (444)
T COG1160          82 EEADVILFVVDGREGITPAD-EEIAKILR---RSKKPVILVVNKIDNLKA----EELAYEF-YSLGFGEPVPISAEHGRG  152 (444)
T ss_pred             HhCCEEEEEEeCCCCCCHHH-HHHHHHHH---hcCCCEEEEEEcccCchh----hhhHHHH-HhcCCCCceEeehhhccC
Confidence            89999999999976332111 11222233   235899999999996421    2223333 3445 5899999999999


Q ss_pred             HHHHHHHHHHHHHHHhccCCCCCCCCCCccccCCCCCCCCCC
Q 028792          158 VEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPVNQKSG  199 (203)
Q Consensus       158 i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (203)
                      +.+++++++..+. .....+......+.+...-+.|..+||+
T Consensus       153 i~dLld~v~~~l~-~~e~~~~~~~~~~ikiaiiGrPNvGKSs  193 (444)
T COG1160         153 IGDLLDAVLELLP-PDEEEEEEEETDPIKIAIIGRPNVGKSS  193 (444)
T ss_pred             HHHHHHHHHhhcC-CcccccccccCCceEEEEEeCCCCCchH
Confidence            9999999999875 2222222222467888888888888774

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.87  E-value=6.9e-21  Score=161.08  Aligned_cols=155  Identities=20%  Similarity=0.238  Sum_probs=113.9

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEE
Q 028792            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI   84 (203)
Q Consensus         5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (203)
                      ..+...|+|+|..++|||||+++|....+.....+.++.+.....+.+++  ..+++|||||+..|..++...+..+|++
T Consensus       287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDia  364 (787)
T PRK05306        287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIV  364 (787)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEE
Confidence            35778999999999999999999988776655444455555555566665  6789999999999999888889999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHH-------HHHHcC--CCEEEEecCCC
Q 028792           85 IVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKA-------FADEIG--IPFMETSAKSA  155 (203)
Q Consensus        85 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~-------~~~~~~--~~~~~~Sa~~~  155 (203)
                      |||+|+++...    .++...+......+.|+++++||+|+....   .+.+..       +...++  ++++++||++|
T Consensus       365 ILVVdAddGv~----~qT~e~i~~a~~~~vPiIVviNKiDl~~a~---~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG  437 (787)
T PRK05306        365 VLVVAADDGVM----PQTIEAINHAKAAGVPIIVAINKIDKPGAN---PDRVKQELSEYGLVPEEWGGDTIFVPVSAKTG  437 (787)
T ss_pred             EEEEECCCCCC----HhHHHHHHHHHhcCCcEEEEEECccccccC---HHHHHHHHHHhcccHHHhCCCceEEEEeCCCC
Confidence            99999987422    111122222223468999999999986432   122211       122333  68999999999


Q ss_pred             CCHHHHHHHHHHH
Q 028792          156 TNVEQAFMAMAAS  168 (203)
Q Consensus       156 ~gi~~~~~~l~~~  168 (203)
                      .|++++|++|...
T Consensus       438 ~GI~eLle~I~~~  450 (787)
T PRK05306        438 EGIDELLEAILLQ  450 (787)
T ss_pred             CCchHHHHhhhhh
Confidence            9999999999764

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.87  E-value=6.4e-21  Score=158.23  Aligned_cols=154  Identities=16%  Similarity=0.203  Sum_probs=115.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC---CCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADD---SYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      +.|+++|.+++|||||+++|.+.   .++.+..++++.+.....+..++  ..+.+||+||++.|.......+.++|+++
T Consensus         1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI   78 (581)
T TIGR00475         1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL   78 (581)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence            46899999999999999999963   34444455666666666666666  78899999999998888888889999999


Q ss_pred             EEEeCCC---hhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCccc--CHHHHHHHHHHc----CCCEEEEecCCC
Q 028792           86 VVYDVTD---QESFNNVKQWLNEIDRYASENVN-KLLVGNKCDLTANKVV--SYETAKAFADEI----GIPFMETSAKSA  155 (203)
Q Consensus        86 ~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p-~iiv~nK~D~~~~~~~--~~~~~~~~~~~~----~~~~~~~Sa~~~  155 (203)
                      +|+|+++   +++.+.+    ..+..   .+.| +++++||+|+.+....  ..+++.++....    +++++++||++|
T Consensus        79 LVVDa~~G~~~qT~ehl----~il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG  151 (581)
T TIGR00475        79 LVVDADEGVMTQTGEHL----AVLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTG  151 (581)
T ss_pred             EEEECCCCCcHHHHHHH----HHHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCC
Confidence            9999987   3443322    22222   2567 9999999999764322  123455555544    478999999999


Q ss_pred             CCHHHHHHHHHHHHHH
Q 028792          156 TNVEQAFMAMAASIKN  171 (203)
Q Consensus       156 ~gi~~~~~~l~~~~~~  171 (203)
                      +|+++++.+|...+..
T Consensus       152 ~GI~eL~~~L~~l~~~  167 (581)
T TIGR00475       152 QGIGELKKELKNLLES  167 (581)
T ss_pred             CCchhHHHHHHHHHHh
Confidence            9999999998876654

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.87  E-value=5.7e-21  Score=160.34  Aligned_cols=157  Identities=19%  Similarity=0.220  Sum_probs=111.7

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceee--EEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcE
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDF--KIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG   83 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   83 (203)
                      .+...|+|+|..++|||||+++|....+.....++.+.+.  +...+..++....+.+|||||+..|..++...+..+|+
T Consensus       242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi  321 (742)
T CHL00189        242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI  321 (742)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence            4668999999999999999999998766554433333332  22333333445789999999999999999889999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH-------HHHcC--CCEEEEecCC
Q 028792           84 IIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAF-------ADEIG--IPFMETSAKS  154 (203)
Q Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~-------~~~~~--~~~~~~Sa~~  154 (203)
                      +|+|+|+++.........    +......+.|+++++||+|+....   .+.+.+.       ...++  ++++++||++
T Consensus       322 aILVVDA~dGv~~QT~E~----I~~~k~~~iPiIVViNKiDl~~~~---~e~v~~eL~~~~ll~e~~g~~vpvv~VSAkt  394 (742)
T CHL00189        322 AILIIAADDGVKPQTIEA----INYIQAANVPIIVAINKIDKANAN---TERIKQQLAKYNLIPEKWGGDTPMIPISASQ  394 (742)
T ss_pred             EEEEEECcCCCChhhHHH----HHHHHhcCceEEEEEECCCccccC---HHHHHHHHHHhccchHhhCCCceEEEEECCC
Confidence            999999987432111111    222223468999999999986532   2222221       22233  6899999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 028792          155 ATNVEQAFMAMAASI  169 (203)
Q Consensus       155 ~~gi~~~~~~l~~~~  169 (203)
                      |.|+++++++|....
T Consensus       395 G~GIdeLle~I~~l~  409 (742)
T CHL00189        395 GTNIDKLLETILLLA  409 (742)
T ss_pred             CCCHHHHHHhhhhhh
Confidence            999999999998753

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.87  E-value=1.1e-20  Score=138.08  Aligned_cols=118  Identities=23%  Similarity=0.387  Sum_probs=87.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCC-cEEEEEE
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGA-HGIIVVY   88 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~-d~~i~v~   88 (203)
                      +|+++|++|||||||+++|..+.+...+.++ ............+....+.+||+||+.++...+..++..+ +++|||+
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv   80 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV   80 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence            6899999999999999999988776654433 2222222222223346799999999999988888888888 9999999


Q ss_pred             eCCCh-hhHHHHHHHHHHHHhh---cCCCCcEEEEEeCCCCCCC
Q 028792           89 DVTDQ-ESFNNVKQWLNEIDRY---ASENVNKLLVGNKCDLTAN  128 (203)
Q Consensus        89 d~~~~-~s~~~~~~~~~~l~~~---~~~~~p~iiv~nK~D~~~~  128 (203)
                      |+.+. .++..+..++..+...   ...+.|+++++||+|+...
T Consensus        81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a  124 (203)
T cd04105          81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA  124 (203)
T ss_pred             ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence            99987 6777766655544322   2247999999999998653

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.87  E-value=5.4e-21  Score=139.80  Aligned_cols=159  Identities=18%  Similarity=0.214  Sum_probs=101.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCC---CCCCccccceeeEEEEEEEC---------------------------C----
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDSY---LESYISTIGVDFKIRTVEQD---------------------------G----   54 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~~---~~~~~~~~~~~~~~~~~~~~---------------------------~----   54 (203)
                      ++|+++|+.|+|||||+..|.....   +.......+.........+.                           +    
T Consensus         1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T cd01888           1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK   80 (203)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence            4799999999999999999975421   11111111111111111110                           0    


Q ss_pred             eEEEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc--C
Q 028792           55 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVV--S  132 (203)
Q Consensus        55 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~--~  132 (203)
                      ....+.+||+||+..+...+...+..+|++++|+|++++.........+..+...  ...|+++++||+|+......  .
T Consensus        81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~--~~~~iiivvNK~Dl~~~~~~~~~  158 (203)
T cd01888          81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM--GLKHIIIVQNKIDLVKEEQALEN  158 (203)
T ss_pred             cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc--CCCcEEEEEEchhccCHHHHHHH
Confidence            1267899999999988887777888999999999998732111111222222222  12478999999998653221  1


Q ss_pred             HHHHHHHHHHc---CCCEEEEecCCCCCHHHHHHHHHHHH
Q 028792          133 YETAKAFADEI---GIPFMETSAKSATNVEQAFMAMAASI  169 (203)
Q Consensus       133 ~~~~~~~~~~~---~~~~~~~Sa~~~~gi~~~~~~l~~~~  169 (203)
                      .+.+.++....   +++++++||++|+|++++|++|.+.+
T Consensus       159 ~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l  198 (203)
T cd01888         159 YEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKI  198 (203)
T ss_pred             HHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence            23334444332   57899999999999999999998654

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.87  E-value=2.1e-21  Score=140.41  Aligned_cols=159  Identities=21%  Similarity=0.262  Sum_probs=106.3

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCC------------------CCccccceeeEEEEEEECCeEEEEEEEeCCChh
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFADDSYLE------------------SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE   68 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~   68 (203)
                      ...+|+++|+.++|||||+.+|+......                  +.....+.......+........++++|+||+.
T Consensus         2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~   81 (188)
T PF00009_consen    2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE   81 (188)
T ss_dssp             TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred             CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence            46899999999999999999998433211                  111222333334444411333789999999999


Q ss_pred             hhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc-CHHHHH-HHHHHc---
Q 028792           69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVV-SYETAK-AFADEI---  143 (203)
Q Consensus        69 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~-~~~~~~-~~~~~~---  143 (203)
                      .+.......+..+|++|+|+|+.+.-.. .....+..+..   .+.|+++++||+|+...+.. ..++.. .+.+..   
T Consensus        82 ~f~~~~~~~~~~~D~ailvVda~~g~~~-~~~~~l~~~~~---~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~  157 (188)
T PF00009_consen   82 DFIKEMIRGLRQADIAILVVDANDGIQP-QTEEHLKILRE---LGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGEN  157 (188)
T ss_dssp             HHHHHHHHHHTTSSEEEEEEETTTBSTH-HHHHHHHHHHH---TT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTST
T ss_pred             ceeecccceecccccceeeeeccccccc-ccccccccccc---cccceEEeeeeccchhhhHHHHHHHHHHHhccccccC
Confidence            8888888889999999999999865332 12333333333   36889999999998721110 011122 233333   


Q ss_pred             ---CCCEEEEecCCCCCHHHHHHHHHHHH
Q 028792          144 ---GIPFMETSAKSATNVEQAFMAMAASI  169 (203)
Q Consensus       144 ---~~~~~~~Sa~~~~gi~~~~~~l~~~~  169 (203)
                         .++++++||.+|.|++++++.|.+.+
T Consensus       158 ~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~  186 (188)
T PF00009_consen  158 GEEIVPVIPISALTGDGIDELLEALVELL  186 (188)
T ss_dssp             TTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred             ccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence               25799999999999999999998765

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>cd04163 Era Era subfamily

Probab=99.87  E-value=1.1e-20  Score=133.43  Aligned_cols=156  Identities=17%  Similarity=0.125  Sum_probs=101.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhch--------hhhcccc
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT--------ITSSYYR   79 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~   79 (203)
                      ..+|+++|++|+|||||+++|.+.................. .........+.+||+||......        .....+.
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   81 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIR-GIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK   81 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEE-EEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence            57899999999999999999998765432221111111111 11222336788999999643221        2334578


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC-CCEEEEecCCCCCH
Q 028792           80 GAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIG-IPFMETSAKSATNV  158 (203)
Q Consensus        80 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi  158 (203)
                      .+|++++|+|++++.+. ....+...+...   +.|+++++||+|+........+....+....+ .+++++|++++.|+
T Consensus        82 ~~d~i~~v~d~~~~~~~-~~~~~~~~~~~~---~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~  157 (168)
T cd04163          82 DVDLVLFVVDASEPIGE-GDEFILELLKKS---KTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENV  157 (168)
T ss_pred             hCCEEEEEEECCCccCc-hHHHHHHHHHHh---CCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCCh
Confidence            89999999999986221 112222223222   57999999999987433222333444444443 68999999999999


Q ss_pred             HHHHHHHHHH
Q 028792          159 EQAFMAMAAS  168 (203)
Q Consensus       159 ~~~~~~l~~~  168 (203)
                      ++++.+|.+.
T Consensus       158 ~~l~~~l~~~  167 (168)
T cd04163         158 DELLEEIVKY  167 (168)
T ss_pred             HHHHHHHHhh
Confidence            9999999764

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.87  E-value=4.3e-21  Score=155.55  Aligned_cols=164  Identities=25%  Similarity=0.248  Sum_probs=110.7

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCC-CCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhch----------h-
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSY-LESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT----------I-   73 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----------~-   73 (203)
                      ...++|+++|.+|+|||||+++|++... .....+.++.+.....+..++  ..+.+|||||......          . 
T Consensus       171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~  248 (435)
T PRK00093        171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIR  248 (435)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHH
Confidence            3569999999999999999999997653 223334444444444444555  5678999999532211          1 


Q ss_pred             hhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHH-HHHHH----cCCCEE
Q 028792           74 TSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAK-AFADE----IGIPFM  148 (203)
Q Consensus        74 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~-~~~~~----~~~~~~  148 (203)
                      ....+..+|++++|+|++++.+..... +...+.   ..+.|+++++||+|+.+...  .++.. .+...    ..++++
T Consensus       249 ~~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~---~~~~~~ivv~NK~Dl~~~~~--~~~~~~~~~~~l~~~~~~~i~  322 (435)
T PRK00093        249 TLKAIERADVVLLVIDATEGITEQDLR-IAGLAL---EAGRALVIVVNKWDLVDEKT--MEEFKKELRRRLPFLDYAPIV  322 (435)
T ss_pred             HHHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHH---HcCCcEEEEEECccCCCHHH--HHHHHHHHHHhcccccCCCEE
Confidence            123578899999999999876644432 222222   23689999999999874322  11121 12111    247999


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHHHhccCC
Q 028792          149 ETSAKSATNVEQAFMAMAASIKNRMASQP  177 (203)
Q Consensus       149 ~~Sa~~~~gi~~~~~~l~~~~~~~~~~~~  177 (203)
                      ++||++|.|++++++.+.+...++..+.+
T Consensus       323 ~~SA~~~~gv~~l~~~i~~~~~~~~~~i~  351 (435)
T PRK00093        323 FISALTGQGVDKLLEAIDEAYENANRRIS  351 (435)
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHHHcCcCC
Confidence            99999999999999999887776655443

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.86  E-value=1.2e-21  Score=133.76  Aligned_cols=160  Identities=28%  Similarity=0.434  Sum_probs=122.4

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCC---CC----CCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhcccc
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFADDS---YL----ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYR   79 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~   79 (203)
                      ..+.|+|+|..++|||||+.++-...   +.    ....+|.+  .....+..++  ..+.+||.+|++..+++|..++.
T Consensus        16 e~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvg--Lnig~i~v~~--~~l~fwdlgGQe~lrSlw~~yY~   91 (197)
T KOG0076|consen   16 EDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVG--LNIGTIEVCN--APLSFWDLGGQESLRSLWKKYYW   91 (197)
T ss_pred             hhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccc--eeecceeecc--ceeEEEEcCChHHHHHHHHHHHH
Confidence            34789999999999999999886322   11    12234444  3333444444  67899999999999999999999


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHH-HhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH---Hc---CCCEEEEec
Q 028792           80 GAHGIIVVYDVTDQESFNNVKQWLNEI-DRYASENVNKLLVGNKCDLTANKVVSYETAKAFAD---EI---GIPFMETSA  152 (203)
Q Consensus        80 ~~d~~i~v~d~~~~~s~~~~~~~~~~l-~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~---~~---~~~~~~~Sa  152 (203)
                      .++++|+++|+++++.|.+....++.+ ......+.|+++.+||.|+.+.  +...++.....   ..   ..++.++||
T Consensus        92 ~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~--~~~~El~~~~~~~e~~~~rd~~~~pvSa  169 (197)
T KOG0076|consen   92 LAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNA--MEAAELDGVFGLAELIPRRDNPFQPVSA  169 (197)
T ss_pred             HhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhh--hhHHHHHHHhhhhhhcCCccCccccchh
Confidence            999999999999999999877755544 4445578999999999998654  33344443333   22   368999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHH
Q 028792          153 KSATNVEQAFMAMAASIKNR  172 (203)
Q Consensus       153 ~~~~gi~~~~~~l~~~~~~~  172 (203)
                      .+|+|+++...|+...+..+
T Consensus       170 l~gegv~egi~w~v~~~~kn  189 (197)
T KOG0076|consen  170 LTGEGVKEGIEWLVKKLEKN  189 (197)
T ss_pred             hhcccHHHHHHHHHHHHhhc
Confidence            99999999999999988766

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.86  E-value=1.2e-20  Score=160.36  Aligned_cols=165  Identities=22%  Similarity=0.230  Sum_probs=114.3

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCC-CCCccccceeeEEEEEEECCeEEEEEEEeCCChhh----------hchh-h
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFADDSYL-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER----------FRTI-T   74 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~-~   74 (203)
                      ..++|+++|.+|+|||||+++|++.... ....++++.+.....+.+++.  .+.+|||||..+          +..+ .
T Consensus       449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~--~~~liDTaG~~~~~~~~~~~e~~~~~r~  526 (712)
T PRK09518        449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGE--DWLFIDTAGIKRRQHKLTGAEYYSSLRT  526 (712)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCC--EEEEEECCCcccCcccchhHHHHHHHHH
Confidence            4589999999999999999999987642 223344445555555666764  467999999532          2111 1


Q ss_pred             hccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHH-HHHH----cCCCEEE
Q 028792           75 SSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKA-FADE----IGIPFME  149 (203)
Q Consensus        75 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~-~~~~----~~~~~~~  149 (203)
                      ...+..+|++++|+|+++..+...... +..+.   ..+.|+++|+||+|+.+...  .+.... +...    ..+++++
T Consensus       527 ~~~i~~advvilViDat~~~s~~~~~i-~~~~~---~~~~piIiV~NK~DL~~~~~--~~~~~~~~~~~l~~~~~~~ii~  600 (712)
T PRK09518        527 QAAIERSELALFLFDASQPISEQDLKV-MSMAV---DAGRALVLVFNKWDLMDEFR--RQRLERLWKTEFDRVTWARRVN  600 (712)
T ss_pred             HHHhhcCCEEEEEEECCCCCCHHHHHH-HHHHH---HcCCCEEEEEEchhcCChhH--HHHHHHHHHHhccCCCCCCEEE
Confidence            234688999999999998877665543 22232   23689999999999865322  122222 1111    1357899


Q ss_pred             EecCCCCCHHHHHHHHHHHHHHHhccCCCC
Q 028792          150 TSAKSATNVEQAFMAMAASIKNRMASQPAS  179 (203)
Q Consensus       150 ~Sa~~~~gi~~~~~~l~~~~~~~~~~~~~~  179 (203)
                      +||++|.|++++++.+.+.+.++..+.+..
T Consensus       601 iSAktg~gv~~L~~~i~~~~~~~~~~i~T~  630 (712)
T PRK09518        601 LSAKTGWHTNRLAPAMQEALESWDQRIPTG  630 (712)
T ss_pred             EECCCCCCHHHHHHHHHHHHHHhcccCChH
Confidence            999999999999999999888766655553

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.86  E-value=1.7e-20  Score=159.48  Aligned_cols=181  Identities=20%  Similarity=0.159  Sum_probs=116.9

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCC-CCccccceeeEEEEEEECCeEEEEEEEeCCChhh--------hchhhhcc
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFADDSYLE-SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER--------FRTITSSY   77 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~   77 (203)
                      ...+|+++|.+|+|||||+|+|++..... ...++.+.+.......+++  ..+.+|||||...        +.......
T Consensus       274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~  351 (712)
T PRK09518        274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQAQIA  351 (712)
T ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHHHHH
Confidence            34789999999999999999999865422 2234444444444445555  5788999999652        23334456


Q ss_pred             ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-CEEEEecCCCC
Q 028792           78 YRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGI-PFMETSAKSAT  156 (203)
Q Consensus        78 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~  156 (203)
                      +..+|+++||+|+++.-...+ ..+...+..   .+.|+++|+||+|+....    ....++. ..+. ..+++||++|.
T Consensus       352 ~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~---~~~pvIlV~NK~D~~~~~----~~~~~~~-~lg~~~~~~iSA~~g~  422 (712)
T PRK09518        352 VSLADAVVFVVDGQVGLTSTD-ERIVRMLRR---AGKPVVLAVNKIDDQASE----YDAAEFW-KLGLGEPYPISAMHGR  422 (712)
T ss_pred             HHhCCEEEEEEECCCCCCHHH-HHHHHHHHh---cCCCEEEEEECcccccch----hhHHHHH-HcCCCCeEEEECCCCC
Confidence            789999999999976322111 134444432   478999999999985421    1222222 2232 46899999999


Q ss_pred             CHHHHHHHHHHHHHHHhccCCCCCCCCCCccccCCCCCCCCC
Q 028792          157 NVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPVNQKS  198 (203)
Q Consensus       157 gi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (203)
                      |+++++++|.+.+...............++....+.++.+||
T Consensus       423 GI~eLl~~i~~~l~~~~~~~~a~~~~~~~kI~ivG~~nvGKS  464 (712)
T PRK09518        423 GVGDLLDEALDSLKVAEKTSGFLTPSGLRRVALVGRPNVGKS  464 (712)
T ss_pred             CchHHHHHHHHhcccccccccccCCCCCcEEEEECCCCCCHH
Confidence            999999999998754221110001223456666677666665

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.86  E-value=9.9e-21  Score=157.25  Aligned_cols=146  Identities=20%  Similarity=0.247  Sum_probs=108.9

Q ss_pred             cCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchh------hhccc--cCCcEEEE
Q 028792           15 GDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI------TSSYY--RGAHGIIV   86 (203)
Q Consensus        15 G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~------~~~~~--~~~d~~i~   86 (203)
                      |.+|+|||||+|+|.+........++.+.+.....+..++  ..+++||+||..++...      ...++  ..+|++++
T Consensus         1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~   78 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN   78 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence            8999999999999998776555556666666666666666  46789999998766443      22232  47899999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHH
Q 028792           87 VYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMA  166 (203)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  166 (203)
                      |+|+++.+..   ..+...+.   ..+.|+++++||+|+.+..... .+...+.+..+++++++||++|+|++++++++.
T Consensus        79 VvDat~ler~---l~l~~ql~---~~~~PiIIVlNK~Dl~~~~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~  151 (591)
T TIGR00437        79 VVDASNLERN---LYLTLQLL---ELGIPMILALNLVDEAEKKGIR-IDEEKLEERLGVPVVPTSATEGRGIERLKDAIR  151 (591)
T ss_pred             EecCCcchhh---HHHHHHHH---hcCCCEEEEEehhHHHHhCCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHH
Confidence            9999875432   12222222   2368999999999986544443 346778888899999999999999999999998


Q ss_pred             HHH
Q 028792          167 ASI  169 (203)
Q Consensus       167 ~~~  169 (203)
                      +..
T Consensus       152 ~~~  154 (591)
T TIGR00437       152 KAI  154 (591)
T ss_pred             HHh
Confidence            753

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.86  E-value=6.6e-22  Score=130.96  Aligned_cols=161  Identities=22%  Similarity=0.356  Sum_probs=119.5

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      ++.++|+++|-.|+|||++..++..++.... .|+++  +....+.+.+  +++.+||.+|+...+..|+.++.+.|++|
T Consensus        16 e~e~rililgldGaGkttIlyrlqvgevvtt-kPtig--fnve~v~yKN--Lk~~vwdLggqtSirPyWRcYy~dt~avI   90 (182)
T KOG0072|consen   16 EREMRILILGLDGAGKTTILYRLQVGEVVTT-KPTIG--FNVETVPYKN--LKFQVWDLGGQTSIRPYWRCYYADTDAVI   90 (182)
T ss_pred             ccceEEEEeeccCCCeeEEEEEcccCccccc-CCCCC--cCcccccccc--ccceeeEccCcccccHHHHHHhcccceEE
Confidence            4889999999999999999988876554333 24444  5555555544  88999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHH-HHHHHHhhcCCCCcEEEEEeCCCCCCCcccCH---HHHHHHHHHcCCCEEEEecCCCCCHHHH
Q 028792           86 VVYDVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDLTANKVVSY---ETAKAFADEIGIPFMETSAKSATNVEQA  161 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~-~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~---~~~~~~~~~~~~~~~~~Sa~~~~gi~~~  161 (203)
                      +|+|.+|.+.+.-... ++..+......+..+++++||.|.......++   ....+-.+..-+.++++||.+|+|+++.
T Consensus        91 yVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~  170 (182)
T KOG0072|consen   91 YVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPA  170 (182)
T ss_pred             EEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccCCcHH
Confidence            9999999987766555 44444333334578889999999864321111   1111112222368999999999999999


Q ss_pred             HHHHHHHHHH
Q 028792          162 FMAMAASIKN  171 (203)
Q Consensus       162 ~~~l~~~~~~  171 (203)
                      ++||.+.+.+
T Consensus       171 ~DWL~~~l~~  180 (182)
T KOG0072|consen  171 MDWLQRPLKS  180 (182)
T ss_pred             HHHHHHHHhc
Confidence            9999998764

>cd00880 Era_like Era (E

Probab=99.85  E-value=2.1e-20  Score=130.81  Aligned_cols=151  Identities=21%  Similarity=0.166  Sum_probs=102.0

Q ss_pred             EEcCCCCcHHHHHHHHhcCCCC-CCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhch-------hhhccccCCcEE
Q 028792           13 LIGDSGVGKSCLLLRFADDSYL-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT-------ITSSYYRGAHGI   84 (203)
Q Consensus        13 i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-------~~~~~~~~~d~~   84 (203)
                      ++|++|+|||||+++|.+.... .......+............ ...+.+||+||......       ....++..+|++
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i   79 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI   79 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence            5899999999999999976544 22223333333333333321 35789999999655432       334577899999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHH---HHHHHHHHcCCCEEEEecCCCCCHHHH
Q 028792           85 IVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYE---TAKAFADEIGIPFMETSAKSATNVEQA  161 (203)
Q Consensus        85 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~---~~~~~~~~~~~~~~~~Sa~~~~gi~~~  161 (203)
                      ++|+|+++........ +....   ...+.|+++++||.|+.........   .........+++++++|++++.|+.++
T Consensus        80 l~v~~~~~~~~~~~~~-~~~~~---~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l  155 (163)
T cd00880          80 LFVVDADLRADEEEEK-LLELL---RERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL  155 (163)
T ss_pred             EEEEeCCCCCCHHHHH-HHHHH---HhcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence            9999999877655443 22222   2246899999999998754322211   112223334578999999999999999


Q ss_pred             HHHHHHH
Q 028792          162 FMAMAAS  168 (203)
Q Consensus       162 ~~~l~~~  168 (203)
                      +.+|.+.
T Consensus       156 ~~~l~~~  162 (163)
T cd00880         156 REALIEA  162 (163)
T ss_pred             HHHHHhh
Confidence            9999874

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=99.85  E-value=7.3e-21  Score=125.71  Aligned_cols=159  Identities=27%  Similarity=0.392  Sum_probs=122.0

Q ss_pred             CCCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCc
Q 028792            3 NEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAH   82 (203)
Q Consensus         3 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d   82 (203)
                      ++..++++|+++|-.++|||||++.|.+... ....||.+  +..+.+..++ ++++++||.+|+...+..|..++.+.|
T Consensus        12 s~t~rEirilllGldnAGKTT~LKqL~sED~-~hltpT~G--Fn~k~v~~~g-~f~LnvwDiGGqr~IRpyWsNYyenvd   87 (185)
T KOG0074|consen   12 SRTRREIRILLLGLDNAGKTTFLKQLKSEDP-RHLTPTNG--FNTKKVEYDG-TFHLNVWDIGGQRGIRPYWSNYYENVD   87 (185)
T ss_pred             CCCcceEEEEEEecCCCcchhHHHHHccCCh-hhccccCC--cceEEEeecC-cEEEEEEecCCccccchhhhhhhhccc
Confidence            4567899999999999999999999987553 33345554  6667776654 488999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHH-HhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHH-----HHcCCCEEEEecCCCC
Q 028792           83 GIIVVYDVTDQESFNNVKQWLNEI-DRYASENVNKLLVGNKCDLTANKVVSYETAKAFA-----DEIGIPFMETSAKSAT  156 (203)
Q Consensus        83 ~~i~v~d~~~~~s~~~~~~~~~~l-~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~  156 (203)
                      ++|||+|.+|+-.|+++.+.+.++ ........|+.|+.||.|+...-  ..+++..-+     ....+.+.+|||..++
T Consensus        88 ~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa--~~eeia~klnl~~lrdRswhIq~csals~e  165 (185)
T KOG0074|consen   88 GLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAA--KVEEIALKLNLAGLRDRSWHIQECSALSLE  165 (185)
T ss_pred             eEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhc--chHHHHHhcchhhhhhceEEeeeCcccccc
Confidence            999999999988888887755554 33344579999999999986432  222221111     1112568899999999


Q ss_pred             CHHHHHHHHHH
Q 028792          157 NVEQAFMAMAA  167 (203)
Q Consensus       157 gi~~~~~~l~~  167 (203)
                      |+.+-.+|+..
T Consensus       166 g~~dg~~wv~s  176 (185)
T KOG0074|consen  166 GSTDGSDWVQS  176 (185)
T ss_pred             CccCcchhhhc
Confidence            99999888764

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.85  E-value=1.1e-19  Score=154.47  Aligned_cols=153  Identities=16%  Similarity=0.196  Sum_probs=110.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchh----------hhcc
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI----------TSSY   77 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~----------~~~~   77 (203)
                      .++|+++|.||+|||||+|+|.+........+..+.+.....+..  ....++++|+||...+...          ...+
T Consensus         3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~--~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~   80 (772)
T PRK09554          3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFST--TDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY   80 (772)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEc--CceEEEEEECCCccccccccccccHHHHHHHHH
Confidence            578999999999999999999976554333344444333334443  3477899999997655321          1122


Q ss_pred             --ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCC
Q 028792           78 --YRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSA  155 (203)
Q Consensus        78 --~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  155 (203)
                        ...+|++++|+|+++.+...   .+...+..   .+.|+++++||+|+.+.+.. .....++.+.++++++++||++|
T Consensus        81 l~~~~aD~vI~VvDat~ler~l---~l~~ql~e---~giPvIvVlNK~Dl~~~~~i-~id~~~L~~~LG~pVvpiSA~~g  153 (772)
T PRK09554         81 ILSGDADLLINVVDASNLERNL---YLTLQLLE---LGIPCIVALNMLDIAEKQNI-RIDIDALSARLGCPVIPLVSTRG  153 (772)
T ss_pred             HhccCCCEEEEEecCCcchhhH---HHHHHHHH---cCCCEEEEEEchhhhhccCc-HHHHHHHHHHhCCCEEEEEeecC
Confidence              35799999999998865422   23333332   36899999999998754444 34567778889999999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 028792          156 TNVEQAFMAMAASI  169 (203)
Q Consensus       156 ~gi~~~~~~l~~~~  169 (203)
                      +|++++++.+.+..
T Consensus       154 ~GIdeL~~~I~~~~  167 (772)
T PRK09554        154 RGIEALKLAIDRHQ  167 (772)
T ss_pred             CCHHHHHHHHHHhh
Confidence            99999999887754

>COG1159 Era GTPase [General function prediction only]

Probab=99.85  E-value=5.1e-20  Score=137.09  Aligned_cols=160  Identities=18%  Similarity=0.132  Sum_probs=108.8

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCc-cccceeeEEEEEEECCeEEEEEEEeCCChhhh--------chhhhcc
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYI-STIGVDFKIRTVEQDGKTIKLQIWDTAGQERF--------RTITSSY   77 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~--------~~~~~~~   77 (203)
                      +.--|+++|.||+|||||+|+|++.+.+-.+. +.++.......+..+  +.++.++||||...-        .......
T Consensus         5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~--~~QiIfvDTPGih~pk~~l~~~m~~~a~~s   82 (298)
T COG1159           5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTD--NAQIIFVDTPGIHKPKHALGELMNKAARSA   82 (298)
T ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcC--CceEEEEeCCCCCCcchHHHHHHHHHHHHH
Confidence            45678999999999999999999988764433 333333333333333  478999999995432        2233445


Q ss_pred             ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC-CCEEEEecCCCC
Q 028792           78 YRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIG-IPFMETSAKSAT  156 (203)
Q Consensus        78 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~  156 (203)
                      +..+|+++||+|+.+...- .-...++.+..   .+.|+++++||+|..............+..... ..++++||+.|.
T Consensus        83 l~dvDlilfvvd~~~~~~~-~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~  158 (298)
T COG1159          83 LKDVDLILFVVDADEGWGP-GDEFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGD  158 (298)
T ss_pred             hccCcEEEEEEeccccCCc-cHHHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccC
Confidence            7899999999999874331 11223333333   357999999999987654422233333333333 579999999999


Q ss_pred             CHHHHHHHHHHHHHHH
Q 028792          157 NVEQAFMAMAASIKNR  172 (203)
Q Consensus       157 gi~~~~~~l~~~~~~~  172 (203)
                      |++.+.+.+...+.+.
T Consensus       159 n~~~L~~~i~~~Lpeg  174 (298)
T COG1159         159 NVDTLLEIIKEYLPEG  174 (298)
T ss_pred             CHHHHHHHHHHhCCCC
Confidence            9999999988877653

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.84  E-value=1.1e-19  Score=151.06  Aligned_cols=159  Identities=23%  Similarity=0.268  Sum_probs=111.4

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCC--CCC-------------CCccccceeeEEEEEEE---CCeEEEEEEEeCCCh
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDS--YLE-------------SYISTIGVDFKIRTVEQ---DGKTIKLQIWDTAGQ   67 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~--~~~-------------~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~g~   67 (203)
                      ++.-+|+++|+.++|||||+.+|+...  ...             +.....+.......+.+   ++..+.+++|||||+
T Consensus         5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh   84 (600)
T PRK05433          5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH   84 (600)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence            355689999999999999999998521  110             01111222222222222   455688999999999


Q ss_pred             hhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCC-
Q 028792           68 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIP-  146 (203)
Q Consensus        68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~-  146 (203)
                      ..+...+...+..+|++++|+|+++.........|....    ..+.|+++|+||+|+.....  .....++....++. 
T Consensus        85 ~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~----~~~lpiIvViNKiDl~~a~~--~~v~~ei~~~lg~~~  158 (600)
T PRK05433         85 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL----ENDLEIIPVLNKIDLPAADP--ERVKQEIEDVIGIDA  158 (600)
T ss_pred             HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH----HCCCCEEEEEECCCCCcccH--HHHHHHHHHHhCCCc
Confidence            999888888999999999999999865544444443322    23689999999999864321  22233444445543 


Q ss_pred             --EEEEecCCCCCHHHHHHHHHHHHH
Q 028792          147 --FMETSAKSATNVEQAFMAMAASIK  170 (203)
Q Consensus       147 --~~~~Sa~~~~gi~~~~~~l~~~~~  170 (203)
                        ++++||++|.|+++++++|.+.+.
T Consensus       159 ~~vi~iSAktG~GI~~Ll~~I~~~lp  184 (600)
T PRK05433        159 SDAVLVSAKTGIGIEEVLEAIVERIP  184 (600)
T ss_pred             ceEEEEecCCCCCHHHHHHHHHHhCc
Confidence              899999999999999999988764

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.84  E-value=5.8e-20  Score=143.87  Aligned_cols=169  Identities=25%  Similarity=0.176  Sum_probs=121.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCC-CCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchh-----------h
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFADDSYL-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI-----------T   74 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-----------~   74 (203)
                      ..++|+|+|.|++|||||+|+|++.+.. ....+.++.+.....+.+++  -++.++||.|..+-...           .
T Consensus       177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~--~~~~liDTAGiRrk~ki~e~~E~~Sv~rt  254 (444)
T COG1160         177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDG--RKYVLIDTAGIRRKGKITESVEKYSVART  254 (444)
T ss_pred             CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECC--eEEEEEECCCCCcccccccceEEEeehhh
Confidence            4699999999999999999999987654 33345666666667777777  56779999995442221           1


Q ss_pred             hccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH----H-cCCCEEE
Q 028792           75 SSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFAD----E-IGIPFME  149 (203)
Q Consensus        75 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~----~-~~~~~~~  149 (203)
                      ...+..+|.+++|+|++.+-+-    +...........+.+++|++||+|+.+......+.......    . ..++++.
T Consensus       255 ~~aI~~a~vvllviDa~~~~~~----qD~~ia~~i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~  330 (444)
T COG1160         255 LKAIERADVVLLVIDATEGISE----QDLRIAGLIEEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVF  330 (444)
T ss_pred             HhHHhhcCEEEEEEECCCCchH----HHHHHHHHHHHcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEE
Confidence            2346789999999999987652    22222333344578999999999988764444443332222    1 2378999


Q ss_pred             EecCCCCCHHHHHHHHHHHHHHHhccCCCCCC
Q 028792          150 TSAKSATNVEQAFMAMAASIKNRMASQPASNN  181 (203)
Q Consensus       150 ~Sa~~~~gi~~~~~~l~~~~~~~~~~~~~~~~  181 (203)
                      +||++|.|+.++|+.+......+..+.+.+..
T Consensus       331 iSA~~~~~i~~l~~~i~~~~~~~~~ri~Ts~L  362 (444)
T COG1160         331 ISALTGQGLDKLFEAIKEIYECATRRISTSLL  362 (444)
T ss_pred             EEecCCCChHHHHHHHHHHHHHhccccCHHHH
Confidence            99999999999999999988887766665543

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.84  E-value=4.8e-19  Score=131.86  Aligned_cols=151  Identities=23%  Similarity=0.213  Sum_probs=102.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhc-------hhhhccccCCc
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR-------TITSSYYRGAH   82 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~~~~~~~~~d   82 (203)
                      +|+++|++|+|||||+++|.+........+..+.+.....+.+++  ..+++||+||.....       ......++++|
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad   79 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD   79 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence            689999999999999999998664333233333444455555666  678999999964322       12345678999


Q ss_pred             EEEEEEeCCChh-hHHHHHHHHHH-----------------------------------------HHhh-----------
Q 028792           83 GIIVVYDVTDQE-SFNNVKQWLNE-----------------------------------------IDRY-----------  109 (203)
Q Consensus        83 ~~i~v~d~~~~~-s~~~~~~~~~~-----------------------------------------l~~~-----------  109 (203)
                      ++++|+|+++++ ....+...+..                                         +..+           
T Consensus        80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~  159 (233)
T cd01896          80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE  159 (233)
T ss_pred             EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence            999999998765 22222222210                                         0000           


Q ss_pred             -----------c--CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHHHH
Q 028792          110 -----------A--SENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI  169 (203)
Q Consensus       110 -----------~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~  169 (203)
                                 .  ....|+++|+||+|+..     .++...++.  ...++++||++|.|++++|+.|.+.+
T Consensus       160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~-----~~~~~~~~~--~~~~~~~SA~~g~gi~~l~~~i~~~L  225 (233)
T cd01896         160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLIS-----IEELDLLAR--QPNSVVISAEKGLNLDELKERIWDKL  225 (233)
T ss_pred             CCCHHHHHHHHhCCceEeeEEEEEECccCCC-----HHHHHHHhc--CCCEEEEcCCCCCCHHHHHHHHHHHh
Confidence                       0  12368999999999853     334444443  34699999999999999999998755

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.84  E-value=4.2e-19  Score=122.95  Aligned_cols=156  Identities=22%  Similarity=0.316  Sum_probs=118.0

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhcCCCCC--------CC----ccccceeeEEEEEEECCeEEEEEEEeCCChhhhch
Q 028792            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLE--------SY----ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT   72 (203)
Q Consensus         5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~--------~~----~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~   72 (203)
                      ..+..+|+|.|+.++||||++++++......        ..    ..|+..++....  ..+ ...++++++||+.++.-
T Consensus         7 k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~--~~~-~~~v~LfgtPGq~RF~f   83 (187)
T COG2229           7 KMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIE--LDE-DTGVHLFGTPGQERFKF   83 (187)
T ss_pred             cccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceE--EcC-cceEEEecCCCcHHHHH
Confidence            4567899999999999999999998765311        11    122232333222  222 25689999999999999


Q ss_pred             hhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHc--CCCEEEE
Q 028792           73 ITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEI--GIPFMET  150 (203)
Q Consensus        73 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~  150 (203)
                      +|..+++.++++|+++|.+.+..+ .....++.+.....  .|++|.+||.|+.+.  .+.+.+.++....  .+++++.
T Consensus        84 m~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~~--ip~vVa~NK~DL~~a--~ppe~i~e~l~~~~~~~~vi~~  158 (187)
T COG2229          84 MWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRNP--IPVVVAINKQDLFDA--LPPEKIREALKLELLSVPVIEI  158 (187)
T ss_pred             HHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhccC--CCEEEEeeccccCCC--CCHHHHHHHHHhccCCCceeee
Confidence            999999999999999999998887 44444444433321  899999999999865  5567777766665  7899999


Q ss_pred             ecCCCCCHHHHHHHHHHH
Q 028792          151 SAKSATNVEQAFMAMAAS  168 (203)
Q Consensus       151 Sa~~~~gi~~~~~~l~~~  168 (203)
                      +|.++++..+.+..+...
T Consensus       159 ~a~e~~~~~~~L~~ll~~  176 (187)
T COG2229         159 DATEGEGARDQLDVLLLK  176 (187)
T ss_pred             ecccchhHHHHHHHHHhh
Confidence            999999999999888765

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.83  E-value=2.1e-19  Score=148.51  Aligned_cols=158  Identities=15%  Similarity=0.139  Sum_probs=103.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcc----ccceeeEEEEEEE------------CCeEEEEEEEeCCChhhh
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYIS----TIGVDFKIRTVEQ------------DGKTIKLQIWDTAGQERF   70 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~----~~~~~~~~~~~~~------------~~~~~~~~i~D~~g~~~~   70 (203)
                      +..-|+++|.+++|||||+++|.+..+......    +.+..+.......            ......+.+|||||++.+
T Consensus         3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f   82 (590)
T TIGR00491         3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF   82 (590)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence            445799999999999999999998766433222    1221111111100            000123889999999999


Q ss_pred             chhhhccccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc------------CHHH
Q 028792           71 RTITSSYYRGAHGIIVVYDVTD---QESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVV------------SYET  135 (203)
Q Consensus        71 ~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~------------~~~~  135 (203)
                      ..++...+..+|++++|+|+++   +++++.+..    +.   ..+.|+++++||+|+.+....            ..+.
T Consensus        83 ~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~----l~---~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~  155 (590)
T TIGR00491        83 TNLRKRGGALADLAILIVDINEGFKPQTQEALNI----LR---MYKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQ  155 (590)
T ss_pred             HHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHH----HH---HcCCCEEEEEECCCccchhhhccCchHHHHHHhhhHH
Confidence            9988888999999999999987   444433322    22   236899999999998642100            0000


Q ss_pred             H------------HHHHH------------Hc--CCCEEEEecCCCCCHHHHHHHHHHHHHH
Q 028792          136 A------------KAFAD------------EI--GIPFMETSAKSATNVEQAFMAMAASIKN  171 (203)
Q Consensus       136 ~------------~~~~~------------~~--~~~~~~~Sa~~~~gi~~~~~~l~~~~~~  171 (203)
                      +            .++.+            .+  .++++++||++|+|+++++.+|......
T Consensus       156 v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~~  217 (590)
T TIGR00491       156 VQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQQ  217 (590)
T ss_pred             HHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHHH
Confidence            0            01111            11  2689999999999999999998765443

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.83  E-value=2.2e-19  Score=140.98  Aligned_cols=152  Identities=21%  Similarity=0.253  Sum_probs=114.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCC-CCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhh--------hcccc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDSYLE-SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTIT--------SSYYR   79 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~--------~~~~~   79 (203)
                      ++++++|.||+|||||+|.|++....- ...+.++.++-...+.++|  +.++++||.|..+.....        ...+.
T Consensus       218 ~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~  295 (454)
T COG0486         218 LKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAKKAIE  295 (454)
T ss_pred             ceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHHHHHH
Confidence            899999999999999999999877653 3457778888888888999  778899999976544332        33478


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHH
Q 028792           80 GAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVE  159 (203)
Q Consensus        80 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  159 (203)
                      ++|.++||+|++.+.+-.+.. .   +. ....++|+++|.||.|+.........     ....+.+++.+|+++|+|++
T Consensus       296 ~ADlvL~v~D~~~~~~~~d~~-~---~~-~~~~~~~~i~v~NK~DL~~~~~~~~~-----~~~~~~~~i~iSa~t~~Gl~  365 (454)
T COG0486         296 EADLVLFVLDASQPLDKEDLA-L---IE-LLPKKKPIIVVLNKADLVSKIELESE-----KLANGDAIISISAKTGEGLD  365 (454)
T ss_pred             hCCEEEEEEeCCCCCchhhHH-H---HH-hcccCCCEEEEEechhcccccccchh-----hccCCCceEEEEecCccCHH
Confidence            999999999999863211111 1   11 33457899999999999765432111     11223479999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 028792          160 QAFMAMAASIKNR  172 (203)
Q Consensus       160 ~~~~~l~~~~~~~  172 (203)
                      .+.+.|.+.+...
T Consensus       366 ~L~~~i~~~~~~~  378 (454)
T COG0486         366 ALREAIKQLFGKG  378 (454)
T ss_pred             HHHHHHHHHHhhc
Confidence            9999999887765

>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.82  E-value=6.9e-20  Score=126.94  Aligned_cols=162  Identities=31%  Similarity=0.579  Sum_probs=141.9

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEE
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV   86 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (203)
                      -.++++++|..|.||||++++++.+++...+.+|++.+.....+.-+.+.+++..||+.|++.+..+...++-++.+.|+
T Consensus         9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAii   88 (216)
T KOG0096|consen    9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAII   88 (216)
T ss_pred             ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEE
Confidence            37999999999999999999999999999999999988888877766667999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHH
Q 028792           87 VYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMA  166 (203)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  166 (203)
                      +||+...-++.++..|...+.+... ++|+++.+||.|.....  .......+....++.+++.||+.+.+...-|-||.
T Consensus        89 mFdVtsr~t~~n~~rwhrd~~rv~~-NiPiv~cGNKvDi~~r~--~k~k~v~~~rkknl~y~~iSaksn~NfekPFl~La  165 (216)
T KOG0096|consen   89 MFDVTSRFTYKNVPRWHRDLVRVRE-NIPIVLCGNKVDIKARK--VKAKPVSFHRKKNLQYYEISAKSNYNFERPFLWLA  165 (216)
T ss_pred             EeeeeehhhhhcchHHHHHHHHHhc-CCCeeeeccceeccccc--cccccceeeecccceeEEeecccccccccchHHHh
Confidence            9999999999999999999887776 59999999999975432  12334455566788999999999999999999999


Q ss_pred             HHHHH
Q 028792          167 ASIKN  171 (203)
Q Consensus       167 ~~~~~  171 (203)
                      +.+..
T Consensus       166 rKl~G  170 (216)
T KOG0096|consen  166 RKLTG  170 (216)
T ss_pred             hhhcC
Confidence            88764

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.82  E-value=3.2e-19  Score=143.95  Aligned_cols=154  Identities=19%  Similarity=0.159  Sum_probs=103.3

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcC--CCC-----------------------------CCCccccceeeEEEEEEECC
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADD--SYL-----------------------------ESYISTIGVDFKIRTVEQDG   54 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~--~~~-----------------------------~~~~~~~~~~~~~~~~~~~~   54 (203)
                      ...++|+++|+.++|||||+.+|+..  ...                             .+.....+.+.....+..++
T Consensus         5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~   84 (426)
T TIGR00483         5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDK   84 (426)
T ss_pred             CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCC
Confidence            45689999999999999999999842  111                             11122344444444444444


Q ss_pred             eEEEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHH--HHhhcCCCCcEEEEEeCCCCCCCccc-
Q 028792           55 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNE--IDRYASENVNKLLVGNKCDLTANKVV-  131 (203)
Q Consensus        55 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~--l~~~~~~~~p~iiv~nK~D~~~~~~~-  131 (203)
                        ..+.+||+||+..|.......+..+|++++|+|+++.++.. ..++...  +..... ..|+++++||+|+.+.... 
T Consensus        85 --~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~-~~~t~~~~~~~~~~~-~~~iIVviNK~Dl~~~~~~~  160 (426)
T TIGR00483        85 --YEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEV-QPQTREHAFLARTLG-INQLIVAINKMDSVNYDEEE  160 (426)
T ss_pred             --eEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCccc-CCchHHHHHHHHHcC-CCeEEEEEEChhccCccHHH
Confidence              78999999999887766666678999999999999874321 1111111  111111 3578999999999642211 


Q ss_pred             ---CHHHHHHHHHHcC-----CCEEEEecCCCCCHHHHHH
Q 028792          132 ---SYETAKAFADEIG-----IPFMETSAKSATNVEQAFM  163 (203)
Q Consensus       132 ---~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~~~~  163 (203)
                         ..+++.++++..+     ++++++||++|+|+.+.+.
T Consensus       161 ~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~  200 (426)
T TIGR00483       161 FEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSE  200 (426)
T ss_pred             HHHHHHHHHHHHHHcCCCcccceEEEeecccccccccccc
Confidence               1234556666654     5799999999999987553

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.81  E-value=9.5e-19  Score=123.77  Aligned_cols=150  Identities=19%  Similarity=0.274  Sum_probs=97.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhh----------hchhhhccc-
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER----------FRTITSSYY-   78 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~~~~~~-   78 (203)
                      .|+++|.+|+|||||++.|.+........++.+.+.....+..++   .+.+||+||...          +......++ 
T Consensus         1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~   77 (170)
T cd01876           1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE   77 (170)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence            489999999999999999996555444444444444444444443   788999999432          233333333 


Q ss_pred             --cCCcEEEEEEeCCChhhH--HHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccC--HHHHHHHHH--HcCCCEEEE
Q 028792           79 --RGAHGIIVVYDVTDQESF--NNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVS--YETAKAFAD--EIGIPFMET  150 (203)
Q Consensus        79 --~~~d~~i~v~d~~~~~s~--~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~--~~~~~~~~~  150 (203)
                        ...+++++++|..+..+.  ..+..|+   ...   +.|+++++||+|+.......  ........+  ....+++++
T Consensus        78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l---~~~---~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  151 (170)
T cd01876          78 NRENLKGVVLLIDSRHGPTEIDLEMLDWL---EEL---GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILF  151 (170)
T ss_pred             hChhhhEEEEEEEcCcCCCHhHHHHHHHH---HHc---CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEE
Confidence              346789999998765321  1222232   222   47999999999985432211  112222222  234689999


Q ss_pred             ecCCCCCHHHHHHHHHHH
Q 028792          151 SAKSATNVEQAFMAMAAS  168 (203)
Q Consensus       151 Sa~~~~gi~~~~~~l~~~  168 (203)
                      |++++.|+.+++++|.+.
T Consensus       152 Sa~~~~~~~~l~~~l~~~  169 (170)
T cd01876         152 SSLKGQGIDELRALIEKW  169 (170)
T ss_pred             ecCCCCCHHHHHHHHHHh
Confidence            999999999999999865

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.81  E-value=3.7e-19  Score=130.59  Aligned_cols=147  Identities=24%  Similarity=0.195  Sum_probs=94.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCC-------------------------------CccccceeeEEEEEEECCeEEE
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDSYLES-------------------------------YISTIGVDFKIRTVEQDGKTIK   58 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~   58 (203)
                      +|+++|.+++|||||+++|+...-...                               ..+..+.+.....+..++  ..
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~--~~   78 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPK--RK   78 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCC--ce
Confidence            589999999999999999974321100                               112233333334444444  57


Q ss_pred             EEEEeCCChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc----CHH
Q 028792           59 LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVV----SYE  134 (203)
Q Consensus        59 ~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~----~~~  134 (203)
                      +.+|||||+..+.......+..+|++++|+|++++..-. .......+... . ..++++|+||+|+......    ...
T Consensus        79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~-~~~~~~~~~~~-~-~~~iIvviNK~D~~~~~~~~~~~i~~  155 (208)
T cd04166          79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQ-TRRHSYILSLL-G-IRHVVVAVNKMDLVDYSEEVFEEIVA  155 (208)
T ss_pred             EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHh-HHHHHHHHHHc-C-CCcEEEEEEchhcccCCHHHHHHHHH
Confidence            889999999887666666788999999999998753211 11122222222 1 2457778999998643221    122


Q ss_pred             HHHHHHHHcC---CCEEEEecCCCCCHHHH
Q 028792          135 TAKAFADEIG---IPFMETSAKSATNVEQA  161 (203)
Q Consensus       135 ~~~~~~~~~~---~~~~~~Sa~~~~gi~~~  161 (203)
                      ++.++....+   .+++++||++|.|+.+.
T Consensus       156 ~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~  185 (208)
T cd04166         156 DYLAFAAKLGIEDITFIPISALDGDNVVSR  185 (208)
T ss_pred             HHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence            3445555555   45999999999999854

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.81  E-value=5.3e-19  Score=142.74  Aligned_cols=153  Identities=20%  Similarity=0.202  Sum_probs=100.1

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCC-------------------------------CCCccccceeeEEEEEEECCe
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFADDSYL-------------------------------ESYISTIGVDFKIRTVEQDGK   55 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~   55 (203)
                      ..++|+++|++++|||||+++|+.....                               .+..+.++.+.....+..++ 
T Consensus         5 ~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~-   83 (425)
T PRK12317          5 PHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK-   83 (425)
T ss_pred             CEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC-
Confidence            5699999999999999999999832211                               11123344444444444444 


Q ss_pred             EEEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChhhHH-HHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc----
Q 028792           56 TIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFN-NVKQWLNEIDRYASENVNKLLVGNKCDLTANKV----  130 (203)
Q Consensus        56 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~-~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~----  130 (203)
                       ..+.+||+||+..+.......+..+|++++|+|++++..+. ....++..+... . ..|+++++||+|+.+...    
T Consensus        84 -~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~-~-~~~iivviNK~Dl~~~~~~~~~  160 (425)
T PRK12317         84 -YYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL-G-INQLIVAINKMDAVNYDEKRYE  160 (425)
T ss_pred             -eEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc-C-CCeEEEEEEccccccccHHHHH
Confidence             78999999998877665555578899999999998731211 112222222222 1 246899999999875221    


Q ss_pred             cCHHHHHHHHHHcC-----CCEEEEecCCCCCHHHHHH
Q 028792          131 VSYETAKAFADEIG-----IPFMETSAKSATNVEQAFM  163 (203)
Q Consensus       131 ~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~~~~  163 (203)
                      ...+++.++....+     ++++++||++|+|+++...
T Consensus       161 ~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~  198 (425)
T PRK12317        161 EVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSE  198 (425)
T ss_pred             HHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccccc
Confidence            11234555555554     5799999999999998553

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.80  E-value=3.5e-18  Score=141.80  Aligned_cols=159  Identities=18%  Similarity=0.207  Sum_probs=103.1

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcc----ccceeeEEEEEE--ECCeE-----E-----EEEEEeCCChh
Q 028792            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYIS----TIGVDFKIRTVE--QDGKT-----I-----KLQIWDTAGQE   68 (203)
Q Consensus         5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~----~~~~~~~~~~~~--~~~~~-----~-----~~~i~D~~g~~   68 (203)
                      ..|...|+++|.+++|||||+++|.+.........    +.+..+......  ..+..     .     .+++|||||++
T Consensus         3 ~~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e   82 (586)
T PRK04004          3 KLRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHE   82 (586)
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChH
Confidence            35667899999999999999999986654322221    222111111110  00111     1     26899999999


Q ss_pred             hhchhhhccccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc----CH--------
Q 028792           69 RFRTITSSYYRGAHGIIVVYDVTD---QESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVV----SY--------  133 (203)
Q Consensus        69 ~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~----~~--------  133 (203)
                      .|..++...+..+|++++|+|+++   ++++..+..    +.   ..+.|+++++||+|+......    ..        
T Consensus        83 ~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~----~~---~~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~  155 (586)
T PRK04004         83 AFTNLRKRGGALADIAILVVDINEGFQPQTIEAINI----LK---RRKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQS  155 (586)
T ss_pred             HHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHH----HH---HcCCCEEEEEECcCCchhhhhhcCchHHHHHhhhh
Confidence            999888888899999999999987   555443332    22   236899999999998532110    00        


Q ss_pred             H-----------HHHHHHHHc---------------CCCEEEEecCCCCCHHHHHHHHHHHHH
Q 028792          134 E-----------TAKAFADEI---------------GIPFMETSAKSATNVEQAFMAMAASIK  170 (203)
Q Consensus       134 ~-----------~~~~~~~~~---------------~~~~~~~Sa~~~~gi~~~~~~l~~~~~  170 (203)
                      .           ++..+....               .++++++||++|+|+++++..+...+.
T Consensus       156 ~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~~  218 (586)
T PRK04004        156 QRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLAQ  218 (586)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHHH
Confidence            0           011111111               267999999999999999998875443

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.80  E-value=1.2e-18  Score=139.53  Aligned_cols=166  Identities=20%  Similarity=0.211  Sum_probs=104.7

Q ss_pred             CCCCceeeEEEEEcCCCCcHHHHHHHHhcCCCC---CCCccccceeeEEE--E------------EE----EC------C
Q 028792            2 NNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYL---ESYISTIGVDFKIR--T------------VE----QD------G   54 (203)
Q Consensus         2 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~---~~~~~~~~~~~~~~--~------------~~----~~------~   54 (203)
                      -++....++|+++|+.++|||||+.+|.+...+   .+.....+......  .            +.    .+      +
T Consensus         3 ~~~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (411)
T PRK04000          3 WEKVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETE   82 (411)
T ss_pred             cccCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccc
Confidence            345667799999999999999999999653211   11111222111110  0            00    00      0


Q ss_pred             eEEEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc--C
Q 028792           55 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVV--S  132 (203)
Q Consensus        55 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~--~  132 (203)
                      ....+++||+||+..+..........+|++++|+|++++.........+..+....  ..|+++++||+|+.+....  .
T Consensus        83 ~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~--i~~iiVVlNK~Dl~~~~~~~~~  160 (411)
T PRK04000         83 LLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIG--IKNIVIVQNKIDLVSKERALEN  160 (411)
T ss_pred             cccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcC--CCcEEEEEEeeccccchhHHHH
Confidence            12578999999998887666666677899999999986431111111222222221  2468999999998754322  1


Q ss_pred             HHHHHHHHHHc---CCCEEEEecCCCCCHHHHHHHHHHHH
Q 028792          133 YETAKAFADEI---GIPFMETSAKSATNVEQAFMAMAASI  169 (203)
Q Consensus       133 ~~~~~~~~~~~---~~~~~~~Sa~~~~gi~~~~~~l~~~~  169 (203)
                      .+++..+....   +.+++++||++|+|+++++++|...+
T Consensus       161 ~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l  200 (411)
T PRK04000        161 YEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEI  200 (411)
T ss_pred             HHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhC
Confidence            23344444332   47899999999999999999988765

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.80  E-value=1.4e-18  Score=117.68  Aligned_cols=135  Identities=24%  Similarity=0.301  Sum_probs=95.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCh----hhhchhhhccccCCcEEE
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ----ERFRTITSSYYRGAHGII   85 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~----~~~~~~~~~~~~~~d~~i   85 (203)
                      ||+++|+.|+|||||+++|.+....  +..|....       +.+     .++||||.    ..+.........++|.++
T Consensus         3 rimliG~~g~GKTTL~q~L~~~~~~--~~KTq~i~-------~~~-----~~IDTPGEyiE~~~~y~aLi~ta~dad~V~   68 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNGEEIR--YKKTQAIE-------YYD-----NTIDTPGEYIENPRFYHALIVTAQDADVVL   68 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCCCC--cCccceeE-------ecc-----cEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence            7999999999999999999986652  22333222       111     35899993    233333444557899999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-CEEEEecCCCCCHHHHHHH
Q 028792           86 VVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGI-PFMETSAKSATNVEQAFMA  164 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~~~~  164 (203)
                      ++.|++++.+.-  ..   .+...  ...|+|-|+||+|+... ..+.+.+.++.+..|+ .+|++|+.+|+|++++.++
T Consensus        69 ll~dat~~~~~~--pP---~fa~~--f~~pvIGVITK~Dl~~~-~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~  140 (143)
T PF10662_consen   69 LLQDATEPRSVF--PP---GFASM--FNKPVIGVITKIDLPSD-DANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDY  140 (143)
T ss_pred             EEecCCCCCccC--Cc---hhhcc--cCCCEEEEEECccCccc-hhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHH
Confidence            999999875411  01   11111  25799999999998732 3355667778888886 5899999999999999998


Q ss_pred             HH
Q 028792          165 MA  166 (203)
Q Consensus       165 l~  166 (203)
                      |.
T Consensus       141 L~  142 (143)
T PF10662_consen  141 LE  142 (143)
T ss_pred             Hh
Confidence            74

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.80  E-value=1e-18  Score=139.99  Aligned_cols=161  Identities=18%  Similarity=0.191  Sum_probs=104.1

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCC---CCccccceeeEEE------------------EEEECC------eEEEE
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFADDSYLE---SYISTIGVDFKIR------------------TVEQDG------KTIKL   59 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~---~~~~~~~~~~~~~------------------~~~~~~------~~~~~   59 (203)
                      ..++|+++|..++|||||+++|.+.....   +.....+......                  ....++      ....+
T Consensus         3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   82 (406)
T TIGR03680         3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV   82 (406)
T ss_pred             ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence            46899999999999999999997532211   1111111111100                  000011      13678


Q ss_pred             EEEeCCChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc--CHHHHH
Q 028792           60 QIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVV--SYETAK  137 (203)
Q Consensus        60 ~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~--~~~~~~  137 (203)
                      ++||+||++.|...+......+|++++|+|+++..........+..+....  ..|+++++||+|+.+....  ..+++.
T Consensus        83 ~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~g--i~~iIVvvNK~Dl~~~~~~~~~~~~i~  160 (406)
T TIGR03680        83 SFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIG--IKNIVIVQNKIDLVSKEKALENYEEIK  160 (406)
T ss_pred             EEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcC--CCeEEEEEEccccCCHHHHHHHHHHHH
Confidence            999999999988877777888999999999986431112222222232221  2578999999998753221  123344


Q ss_pred             HHHHHc---CCCEEEEecCCCCCHHHHHHHHHHHH
Q 028792          138 AFADEI---GIPFMETSAKSATNVEQAFMAMAASI  169 (203)
Q Consensus       138 ~~~~~~---~~~~~~~Sa~~~~gi~~~~~~l~~~~  169 (203)
                      ++....   +++++++||++|+|+++++++|...+
T Consensus       161 ~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l  195 (406)
T TIGR03680       161 EFVKGTVAENAPIIPVSALHNANIDALLEAIEKFI  195 (406)
T ss_pred             hhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence            444433   57899999999999999999998755

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.80  E-value=1.7e-18  Score=129.40  Aligned_cols=155  Identities=19%  Similarity=0.249  Sum_probs=113.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchh-------hhccccCCc
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI-------TSSYYRGAH   82 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-------~~~~~~~~d   82 (203)
                      .|.+||.|++|||||+++|...+......+.++.......+.+++- ..+.+-|+||..+-.++       ....++.++
T Consensus       198 dvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf-~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~  276 (366)
T KOG1489|consen  198 DVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDF-SQITVADIPGIIEGAHMNKGLGYKFLRHIERCK  276 (366)
T ss_pred             ccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeecccc-ceeEeccCccccccccccCcccHHHHHHHHhhc
Confidence            4678999999999999999976655444444444444445555543 23889999995433222       233467899


Q ss_pred             EEEEEEeCCCh---hhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-CEEEEecCCCC
Q 028792           83 GIIVVYDVTDQ---ESFNNVKQWLNEIDRYAS--ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGI-PFMETSAKSAT  156 (203)
Q Consensus        83 ~~i~v~d~~~~---~s~~~~~~~~~~l~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~  156 (203)
                      .++||+|++..   ..+..++.+..++..+..  ...|.++|+||+|+.+.+   ...+.+++..+.- .++++||+.++
T Consensus       277 ~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae---~~~l~~L~~~lq~~~V~pvsA~~~e  353 (366)
T KOG1489|consen  277 GLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAE---KNLLSSLAKRLQNPHVVPVSAKSGE  353 (366)
T ss_pred             eEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHH---HHHHHHHHHHcCCCcEEEeeecccc
Confidence            99999999988   788888888877766644  578999999999985321   1224666666664 49999999999


Q ss_pred             CHHHHHHHHHHH
Q 028792          157 NVEQAFMAMAAS  168 (203)
Q Consensus       157 gi~~~~~~l~~~  168 (203)
                      |+.+++..|.+.
T Consensus       354 gl~~ll~~lr~~  365 (366)
T KOG1489|consen  354 GLEELLNGLREL  365 (366)
T ss_pred             chHHHHHHHhhc
Confidence            999999887653

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.80  E-value=3e-18  Score=142.90  Aligned_cols=155  Identities=16%  Similarity=0.130  Sum_probs=104.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC---CCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEE
Q 028792           10 KLLLIGDSGVGKSCLLLRFADD---SYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV   86 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (203)
                      -|.++|..++|||||+++|.+.   ..+.+....++.+.....+...+. ..+.+||+||++.|.......+..+|++++
T Consensus         2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g-~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL   80 (614)
T PRK10512          2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDG-RVLGFIDVPGHEKFLSNMLAGVGGIDHALL   80 (614)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCC-cEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence            4789999999999999999863   333343344444443333333222 458899999999887777777889999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCccc--CHHHHHHHHHHcC---CCEEEEecCCCCCHHH
Q 028792           87 VYDVTDQESFNNVKQWLNEIDRYASENVN-KLLVGNKCDLTANKVV--SYETAKAFADEIG---IPFMETSAKSATNVEQ  160 (203)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~iiv~nK~D~~~~~~~--~~~~~~~~~~~~~---~~~~~~Sa~~~~gi~~  160 (203)
                      |+|+++... ....+.+..+...   +.| +++|+||+|+.+....  ..+++.++....+   ++++++||++|+|+++
T Consensus        81 VVda~eg~~-~qT~ehl~il~~l---gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~  156 (614)
T PRK10512         81 VVACDDGVM-AQTREHLAILQLT---GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDA  156 (614)
T ss_pred             EEECCCCCc-HHHHHHHHHHHHc---CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHH
Confidence            999986321 1112222222222   345 5789999998753222  1234445544443   6899999999999999


Q ss_pred             HHHHHHHHH
Q 028792          161 AFMAMAASI  169 (203)
Q Consensus       161 ~~~~l~~~~  169 (203)
                      +++.|....
T Consensus       157 L~~~L~~~~  165 (614)
T PRK10512        157 LREHLLQLP  165 (614)
T ss_pred             HHHHHHHhh
Confidence            999997654

>PRK10218 GTP-binding protein; Provisional

Probab=99.80  E-value=3.2e-18  Score=141.99  Aligned_cols=159  Identities=14%  Similarity=0.178  Sum_probs=109.6

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhc--CCCCCCC------------ccccceeeEEEEEEECCeEEEEEEEeCCChhhhch
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFAD--DSYLESY------------ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT   72 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~   72 (203)
                      ..-+|+++|+.++|||||+++|+.  +.+....            ..+.+.++......+....+.+++||+||+..+..
T Consensus         4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~   83 (607)
T PRK10218          4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG   83 (607)
T ss_pred             CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence            456899999999999999999986  3332211            12334444444444444558999999999999999


Q ss_pred             hhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc-CHHHHHHHHH-------HcC
Q 028792           73 ITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVV-SYETAKAFAD-------EIG  144 (203)
Q Consensus        73 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~-~~~~~~~~~~-------~~~  144 (203)
                      .+..++..+|++++|+|+.+.... ....++..+..   .+.|.++++||+|....+.. ..+++..+..       ...
T Consensus        84 ~v~~~l~~aDg~ILVVDa~~G~~~-qt~~~l~~a~~---~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~  159 (607)
T PRK10218         84 EVERVMSMVDSVLLVVDAFDGPMP-QTRFVTKKAFA---YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLD  159 (607)
T ss_pred             HHHHHHHhCCEEEEEEecccCccH-HHHHHHHHHHH---cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccC
Confidence            999999999999999999874322 22233332222   36899999999998643221 1233333332       234


Q ss_pred             CCEEEEecCCCC----------CHHHHHHHHHHHH
Q 028792          145 IPFMETSAKSAT----------NVEQAFMAMAASI  169 (203)
Q Consensus       145 ~~~~~~Sa~~~~----------gi~~~~~~l~~~~  169 (203)
                      ++++.+||++|.          |+..+++.+++.+
T Consensus       160 ~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~i  194 (607)
T PRK10218        160 FPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHV  194 (607)
T ss_pred             CCEEEeEhhcCcccCCccccccchHHHHHHHHHhC
Confidence            789999999998          5777877777665

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.80  E-value=3e-18  Score=127.78  Aligned_cols=112  Identities=15%  Similarity=0.172  Sum_probs=79.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCC--------C----------CCccccceeeEEEEEEECCeEEEEEEEeCCChhhhc
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDSYL--------E----------SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR   71 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~~~--------~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~   71 (203)
                      +|+++|.+|+|||||+++|+.....        .          ......+.......+.+++  .++++||+||+..+.
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~--~~i~liDTPG~~~f~   78 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWED--TKVNLIDTPGHMDFI   78 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECC--EEEEEEeCCCccchH
Confidence            5899999999999999999853211        0          0011112222333344444  789999999999888


Q ss_pred             hhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028792           72 TITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTA  127 (203)
Q Consensus        72 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~  127 (203)
                      ..+...+..+|++++|+|+++.... ....++..+..   .+.|+++++||+|+..
T Consensus        79 ~~~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~---~~~P~iivvNK~D~~~  130 (237)
T cd04168          79 AEVERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK---LNIPTIIFVNKIDRAG  130 (237)
T ss_pred             HHHHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH---cCCCEEEEEECccccC
Confidence            8888899999999999999875432 23444444433   3689999999999864

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.80  E-value=4.9e-18  Score=123.04  Aligned_cols=146  Identities=17%  Similarity=0.149  Sum_probs=95.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCC----------------CCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhc
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFADDSY----------------LESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR   71 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~   71 (203)
                      .++|+++|..++|||||+++|+....                ..+..+..+...  ....+......+.++||||+..+.
T Consensus         2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~--~~~~~~~~~~~i~~iDtPG~~~~~   79 (195)
T cd01884           2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINT--AHVEYETANRHYAHVDCPGHADYI   79 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEe--eeeEecCCCeEEEEEECcCHHHHH
Confidence            47899999999999999999985310                001122233333  233333344678999999998887


Q ss_pred             hhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCccc---CHHHHHHHHHHc----
Q 028792           72 TITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVN-KLLVGNKCDLTANKVV---SYETAKAFADEI----  143 (203)
Q Consensus        72 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~iiv~nK~D~~~~~~~---~~~~~~~~~~~~----  143 (203)
                      ......+..+|++++|+|+...-. ......+..+..   .+.| +++++||+|+......   ..+++..+....    
T Consensus        80 ~~~~~~~~~~D~~ilVvda~~g~~-~~~~~~~~~~~~---~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~  155 (195)
T cd01884          80 KNMITGAAQMDGAILVVSATDGPM-PQTREHLLLARQ---VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDG  155 (195)
T ss_pred             HHHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHH---cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccc
Confidence            777777889999999999976422 112223333332   2466 7789999998643221   122344554443    


Q ss_pred             -CCCEEEEecCCCCCHH
Q 028792          144 -GIPFMETSAKSATNVE  159 (203)
Q Consensus       144 -~~~~~~~Sa~~~~gi~  159 (203)
                       +++++++||++|.++.
T Consensus       156 ~~v~iipiSa~~g~n~~  172 (195)
T cd01884         156 DNTPIVRGSALKALEGD  172 (195)
T ss_pred             cCCeEEEeeCccccCCC
Confidence             3789999999999864

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.79  E-value=2.8e-18  Score=142.43  Aligned_cols=155  Identities=16%  Similarity=0.245  Sum_probs=108.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC--CCCCC--------------CccccceeeEEEEEEECCeEEEEEEEeCCChhhhchh
Q 028792           10 KLLLIGDSGVGKSCLLLRFADD--SYLES--------------YISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI   73 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~--~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~   73 (203)
                      +|+|+|+.++|||||+++|+..  .+...              ....++.......+.+++  +++++|||||+..|...
T Consensus         3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~--~kinlIDTPGh~DF~~e   80 (594)
T TIGR01394         3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNG--TKINIVDTPGHADFGGE   80 (594)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECC--EEEEEEECCCHHHHHHH
Confidence            7999999999999999999852  22111              111223223333444544  88999999999999888


Q ss_pred             hhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc-CHHHHHHHHH-------HcCC
Q 028792           74 TSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVV-SYETAKAFAD-------EIGI  145 (203)
Q Consensus        74 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~-~~~~~~~~~~-------~~~~  145 (203)
                      +...+..+|++++|+|+.+.. ......++..+..   .+.|+++++||+|+...+.. -.+++..++.       ...+
T Consensus        81 v~~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~---~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~  156 (594)
T TIGR01394        81 VERVLGMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDF  156 (594)
T ss_pred             HHHHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHH---CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccC
Confidence            899999999999999998632 2333445544443   36899999999998653211 1233333332       2346


Q ss_pred             CEEEEecCCCC----------CHHHHHHHHHHHHH
Q 028792          146 PFMETSAKSAT----------NVEQAFMAMAASIK  170 (203)
Q Consensus       146 ~~~~~Sa~~~~----------gi~~~~~~l~~~~~  170 (203)
                      +++++||++|.          |+..+|+.+.+.+.
T Consensus       157 pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP  191 (594)
T TIGR01394       157 PIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVP  191 (594)
T ss_pred             cEEechhhcCcccccCcccccCHHHHHHHHHHhCC
Confidence            89999999996          79999988887663

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.79  E-value=1.4e-18  Score=128.55  Aligned_cols=146  Identities=19%  Similarity=0.226  Sum_probs=92.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC--C-----------------------------CCCccccceeeEEEEEEECCeEEE
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDSY--L-----------------------------ESYISTIGVDFKIRTVEQDGKTIK   58 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~   58 (203)
                      +|+++|+.++|||||+.+|+...-  .                             .+....++.+.....+...+  ..
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~--~~   78 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEK--YR   78 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCC--eE
Confidence            589999999999999999963210  0                             01112233344444455554  78


Q ss_pred             EEEEeCCChhhhchhhhccccCCcEEEEEEeCCChhh---HH---HHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC--cc
Q 028792           59 LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQES---FN---NVKQWLNEIDRYASENVNKLLVGNKCDLTAN--KV  130 (203)
Q Consensus        59 ~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~--~~  130 (203)
                      +.+||+||+..+...+...+..+|++++|+|+++...   +.   .....+......  ...|+++++||+|+...  ..
T Consensus        79 i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiivvNK~Dl~~~~~~~  156 (219)
T cd01883          79 FTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTL--GVKQLIVAVNKMDDVTVNWSE  156 (219)
T ss_pred             EEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHc--CCCeEEEEEEccccccccccH
Confidence            9999999988777666667788999999999987421   11   112222222211  13688999999998732  11


Q ss_pred             cCH----HHHHHHHHHcC-----CCEEEEecCCCCCHH
Q 028792          131 VSY----ETAKAFADEIG-----IPFMETSAKSATNVE  159 (203)
Q Consensus       131 ~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~gi~  159 (203)
                      ...    +++..+....+     ++++++||++|+|++
T Consensus       157 ~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         157 ERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             HHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence            111    22223344433     679999999999987

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.79  E-value=4.5e-18  Score=126.55  Aligned_cols=163  Identities=17%  Similarity=0.159  Sum_probs=106.5

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhh------------c
Q 028792            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF------------R   71 (203)
Q Consensus         4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~------------~   71 (203)
                      +..+.++|+++|.||+|||||.|.+++.+..+......++.....- .+..+..++.++||||.-.-            .
T Consensus        68 e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilg-i~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~l  146 (379)
T KOG1423|consen   68 EAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILG-IITSGETQLVFYDTPGLVSKKMHRRHHLMMSVL  146 (379)
T ss_pred             hcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeE-EEecCceEEEEecCCcccccchhhhHHHHHHhh
Confidence            4567899999999999999999999999887765444332222222 23334478999999993211            1


Q ss_pred             hhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHH------------HHHH
Q 028792           72 TITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYET------------AKAF  139 (203)
Q Consensus        72 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~------------~~~~  139 (203)
                      +.....+..+|.+++|+|+++.-... -...+..+..+.  ..|-++|+||.|...........            ..++
T Consensus       147 q~~~~a~q~AD~vvVv~Das~tr~~l-~p~vl~~l~~ys--~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v  223 (379)
T KOG1423|consen  147 QNPRDAAQNADCVVVVVDASATRTPL-HPRVLHMLEEYS--KIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEV  223 (379)
T ss_pred             hCHHHHHhhCCEEEEEEeccCCcCcc-ChHHHHHHHHHh--cCCceeeccchhcchhhhHHhhhHHhccccccchhhhhH
Confidence            12334568899999999999633211 122444455554  47889999999976442110000            1111


Q ss_pred             HHHc-------------CC----CEEEEecCCCCCHHHHHHHHHHHHH
Q 028792          140 ADEI-------------GI----PFMETSAKSATNVEQAFMAMAASIK  170 (203)
Q Consensus       140 ~~~~-------------~~----~~~~~Sa~~~~gi~~~~~~l~~~~~  170 (203)
                      .++.             ++    .+|.+||+.|+|++++.++|...+.
T Consensus       224 ~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~  271 (379)
T KOG1423|consen  224 QEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAP  271 (379)
T ss_pred             HHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCC
Confidence            1111             12    3899999999999999999887553

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.78  E-value=1.6e-17  Score=125.08  Aligned_cols=163  Identities=19%  Similarity=0.182  Sum_probs=119.3

Q ss_pred             CCCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCh-----hhhchh----
Q 028792            3 NEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ-----ERFRTI----   73 (203)
Q Consensus         3 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~-----~~~~~~----   73 (203)
                      .-++....|+|.|.||||||||++.+...+......|.++.......+..+.  .+++++||||.     ++.+..    
T Consensus       163 ~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~--~R~QvIDTPGlLDRPl~ErN~IE~qA  240 (346)
T COG1084         163 AIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGY--LRIQVIDTPGLLDRPLEERNEIERQA  240 (346)
T ss_pred             CCCCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCC--ceEEEecCCcccCCChHHhcHHHHHH
Confidence            3455678999999999999999999998887777777777777777777766  78899999992     111111    


Q ss_pred             hhccccCCcEEEEEEeCCChh--hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-CEEEE
Q 028792           74 TSSYYRGAHGIIVVYDVTDQE--SFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGI-PFMET  150 (203)
Q Consensus        74 ~~~~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~  150 (203)
                      ...+-.-.++++|+||.+...  +.+.-..++..+.....  .|+++|+||+|..+.+.+  +++.......+. ....+
T Consensus       241 i~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~--~p~v~V~nK~D~~~~e~~--~~~~~~~~~~~~~~~~~~  316 (346)
T COG1084         241 ILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK--APIVVVINKIDIADEEKL--EEIEASVLEEGGEEPLKI  316 (346)
T ss_pred             HHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC--CCeEEEEecccccchhHH--HHHHHHHHhhccccccce
Confidence            122224478999999998654  56666667777876654  799999999998754333  334444444444 47888


Q ss_pred             ecCCCCCHHHHHHHHHHHHHH
Q 028792          151 SAKSATNVEQAFMAMAASIKN  171 (203)
Q Consensus       151 Sa~~~~gi~~~~~~l~~~~~~  171 (203)
                      ++..+.+++.+-..+.....+
T Consensus       317 ~~~~~~~~d~~~~~v~~~a~~  337 (346)
T COG1084         317 SATKGCGLDKLREEVRKTALE  337 (346)
T ss_pred             eeeehhhHHHHHHHHHHHhhc
Confidence            999999999888888776544

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.78  E-value=1.9e-17  Score=117.18  Aligned_cols=161  Identities=17%  Similarity=0.212  Sum_probs=106.4

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCC----------hhhhchh
Q 028792            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG----------QERFRTI   73 (203)
Q Consensus         4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~~   73 (203)
                      +.+...-|+++|.+|||||||||+|+++....-...|++.+.....+.+++.   +.+.|.||          .+.+..+
T Consensus        20 P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~   96 (200)
T COG0218          20 PEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKL   96 (200)
T ss_pred             CCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHH
Confidence            3456688999999999999999999997743333345555566666666663   78999999          2334444


Q ss_pred             hhcccc---CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCH--HHHHH-HHHHcCCC-
Q 028792           74 TSSYYR---GAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSY--ETAKA-FADEIGIP-  146 (203)
Q Consensus        74 ~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~--~~~~~-~~~~~~~~-  146 (203)
                      ...+++   +-.++++++|+..+-.-.+.    +++......+.|+++++||+|.....+...  ..+.+ +....... 
T Consensus        97 i~~YL~~R~~L~~vvlliD~r~~~~~~D~----em~~~l~~~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~~  172 (200)
T COG0218          97 IEEYLEKRANLKGVVLLIDARHPPKDLDR----EMIEFLLELGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDDQ  172 (200)
T ss_pred             HHHHHhhchhheEEEEEEECCCCCcHHHH----HHHHHHHHcCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCccc
Confidence            444443   35688999998764432211    222222334799999999999876544321  22221 11111222 


Q ss_pred             -EEEEecCCCCCHHHHHHHHHHHHHH
Q 028792          147 -FMETSAKSATNVEQAFMAMAASIKN  171 (203)
Q Consensus       147 -~~~~Sa~~~~gi~~~~~~l~~~~~~  171 (203)
                       ++.+|+..+.|++++...|.+.+..
T Consensus       173 ~~~~~ss~~k~Gi~~l~~~i~~~~~~  198 (200)
T COG0218         173 WVVLFSSLKKKGIDELKAKILEWLKE  198 (200)
T ss_pred             eEEEEecccccCHHHHHHHHHHHhhc
Confidence             8889999999999999999887653

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.77  E-value=9.2e-18  Score=137.19  Aligned_cols=155  Identities=17%  Similarity=0.237  Sum_probs=115.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhch------hhhcc-c-c
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT------ITSSY-Y-R   79 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~-~-~   79 (203)
                      ..+|+++|.||+|||||+|+|.+.+..-...|.++.+.....+...+  .++++.|+||.-....      ..+.+ + .
T Consensus         3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~--~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~   80 (653)
T COG0370           3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKG--HEIEIVDLPGTYSLTAYSEDEKVARDFLLEG   80 (653)
T ss_pred             cceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecC--ceEEEEeCCCcCCCCCCCchHHHHHHHHhcC
Confidence            46799999999999999999998777666667788777777777777  4588999999432211      12223 3 4


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHH
Q 028792           80 GAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVE  159 (203)
Q Consensus        80 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  159 (203)
                      ..|++|-|+|+++-+.-..+.-   ++.   +-+.|++++.|++|..+.+.+. -+..++.+.+++|+++++|++|+|++
T Consensus        81 ~~D~ivnVvDAtnLeRnLyltl---QLl---E~g~p~ilaLNm~D~A~~~Gi~-ID~~~L~~~LGvPVv~tvA~~g~G~~  153 (653)
T COG0370          81 KPDLIVNVVDATNLERNLYLTL---QLL---ELGIPMILALNMIDEAKKRGIR-IDIEKLSKLLGVPVVPTVAKRGEGLE  153 (653)
T ss_pred             CCCEEEEEcccchHHHHHHHHH---HHH---HcCCCeEEEeccHhhHHhcCCc-ccHHHHHHHhCCCEEEEEeecCCCHH
Confidence            5799999999998764222111   122   2378999999999987654443 34667788899999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 028792          160 QAFMAMAASIKN  171 (203)
Q Consensus       160 ~~~~~l~~~~~~  171 (203)
                      ++...+.+....
T Consensus       154 ~l~~~i~~~~~~  165 (653)
T COG0370         154 ELKRAIIELAES  165 (653)
T ss_pred             HHHHHHHHhccc
Confidence            999998875543

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.77  E-value=1.2e-17  Score=126.27  Aligned_cols=163  Identities=18%  Similarity=0.198  Sum_probs=117.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhc----hh---hhccccCCc
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR----TI---TSSYYRGAH   82 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~----~~---~~~~~~~~d   82 (203)
                      -|.++|.|++|||||+++++.-+......+.++.......+... ..-.|.+-|+||..+-.    .+   ....+..+.
T Consensus       161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~-~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~  239 (369)
T COG0536         161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVD-GGESFVVADIPGLIEGASEGVGLGLRFLRHIERTR  239 (369)
T ss_pred             ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEec-CCCcEEEecCcccccccccCCCccHHHHHHHHhhh
Confidence            46789999999999999999776655555665555666666552 23468899999954321    12   233457789


Q ss_pred             EEEEEEeCCChh---hHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEE-EecCCCC
Q 028792           83 GIIVVYDVTDQE---SFNNVKQWLNEIDRYAS--ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFME-TSAKSAT  156 (203)
Q Consensus        83 ~~i~v~d~~~~~---s~~~~~~~~~~l~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-~Sa~~~~  156 (203)
                      ++++|+|++..+   ..++......++..+..  .++|.+||+||+|+....+...+....+.+..+...+. +||.+++
T Consensus       240 vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~~  319 (369)
T COG0536         240 VLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALTRE  319 (369)
T ss_pred             eeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhccc
Confidence            999999998544   46667777777777644  57899999999997655444344444455555544322 9999999


Q ss_pred             CHHHHHHHHHHHHHHHh
Q 028792          157 NVEQAFMAMAASIKNRM  173 (203)
Q Consensus       157 gi~~~~~~l~~~~~~~~  173 (203)
                      |++++...+.+.+.+..
T Consensus       320 g~~~L~~~~~~~l~~~~  336 (369)
T COG0536         320 GLDELLRALAELLEETK  336 (369)
T ss_pred             CHHHHHHHHHHHHHHhh
Confidence            99999999999888775

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.76  E-value=2.4e-18  Score=137.48  Aligned_cols=168  Identities=24%  Similarity=0.330  Sum_probs=127.5

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEE
Q 028792            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI   84 (203)
Q Consensus         5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (203)
                      ....++|+++|..|+||||||..|+..++++...+-...-.....+..+.  +...|.|++....-.......++.+|++
T Consensus         6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe~--vpt~ivD~ss~~~~~~~l~~EirkA~vi   83 (625)
T KOG1707|consen    6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPEN--VPTSIVDTSSDSDDRLCLRKEIRKADVI   83 (625)
T ss_pred             CccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcCc--CceEEEecccccchhHHHHHHHhhcCEE
Confidence            34569999999999999999999999998876554332222222222333  4478999987665555567788999999


Q ss_pred             EEEEeCCChhhHHHHHH-HHHHHHhhcC--CCCcEEEEEeCCCCCCCcccCHHH-HHHHHHHcC-C-CEEEEecCCCCCH
Q 028792           85 IVVYDVTDQESFNNVKQ-WLNEIDRYAS--ENVNKLLVGNKCDLTANKVVSYET-AKAFADEIG-I-PFMETSAKSATNV  158 (203)
Q Consensus        85 i~v~d~~~~~s~~~~~~-~~~~l~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~-~~~~~~~~~-~-~~~~~Sa~~~~gi  158 (203)
                      +++|+++++++++.+.. |+..++....  .+.|+|+|+||.|.......+.+. ...+...+. + ..++|||++..++
T Consensus        84 ~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~n~  163 (625)
T KOG1707|consen   84 CLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLANV  163 (625)
T ss_pred             EEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhhhh
Confidence            99999999999999876 8888877653  479999999999998766654443 445555544 3 4899999999999


Q ss_pred             HHHHHHHHHHHHHHhc
Q 028792          159 EQAFMAMAASIKNRMA  174 (203)
Q Consensus       159 ~~~~~~l~~~~~~~~~  174 (203)
                      .++|....+.+.....
T Consensus       164 ~e~fYyaqKaVihPt~  179 (625)
T KOG1707|consen  164 SELFYYAQKAVIHPTS  179 (625)
T ss_pred             HhhhhhhhheeeccCc
Confidence            9999998887765443

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.76  E-value=5.6e-17  Score=119.94  Aligned_cols=152  Identities=19%  Similarity=0.215  Sum_probs=94.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCc----------------ccc-------ceeeE---------------EEEEE
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDSYLESYI----------------STI-------GVDFK---------------IRTVE   51 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~----------------~~~-------~~~~~---------------~~~~~   51 (203)
                      +|+++|+.++|||||+.+|..+.+.....                .+.       +.+..               ...+.
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE   80 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence            58999999999999999998655432111                000       00000               01111


Q ss_pred             ECCeEEEEEEEeCCChhhhchhhhcccc--CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc
Q 028792           52 QDGKTIKLQIWDTAGQERFRTITSSYYR--GAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANK  129 (203)
Q Consensus        52 ~~~~~~~~~i~D~~g~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~  129 (203)
                      ..  ...+.++|+||+..+.......+.  .+|++++|+|+..... .....++..+.   ..+.|+++++||+|+.+..
T Consensus        81 ~~--~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~---~~~ip~ivvvNK~D~~~~~  154 (224)
T cd04165          81 KS--SKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLAL---ALNIPVFVVVTKIDLAPAN  154 (224)
T ss_pred             eC--CcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHH---HcCCCEEEEEECccccCHH
Confidence            22  256889999999887655444443  6899999999876433 11222333232   2368999999999986532


Q ss_pred             ccC--HHHHHHHHH--------------------------HcCCCEEEEecCCCCCHHHHHHHHHH
Q 028792          130 VVS--YETAKAFAD--------------------------EIGIPFMETSAKSATNVEQAFMAMAA  167 (203)
Q Consensus       130 ~~~--~~~~~~~~~--------------------------~~~~~~~~~Sa~~~~gi~~~~~~l~~  167 (203)
                      ...  .+++.++..                          ...+++|.+|+.+|+|++++...|..
T Consensus       155 ~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~  220 (224)
T cd04165         155 ILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL  220 (224)
T ss_pred             HHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence            221  122222222                          11248999999999999999887753

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.75  E-value=1.9e-17  Score=122.04  Aligned_cols=158  Identities=19%  Similarity=0.311  Sum_probs=99.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCC---ccccceeeEEEEEEECCeEEEEEEEeCCChhhhch-----hhhccccCC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDSYLESY---ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT-----ITSSYYRGA   81 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-----~~~~~~~~~   81 (203)
                      ||+++|+.+|||||+.+.++.+..+...   .+|..  .....+.. ...+.+.+||+||+..+..     .....+.++
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~--ve~~~v~~-~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v   77 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTID--VEKSHVRF-LSFLPLNIWDCPGQDDFMENYFNSQREEIFSNV   77 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS---GGGGGG-----S--EEEEEEEC-TTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTE
T ss_pred             CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCC--ceEEEEec-CCCcEEEEEEcCCccccccccccccHHHHHhcc
Confidence            7999999999999999999986544332   23332  22233321 2337899999999875433     346678999


Q ss_pred             cEEEEEEeCCChhh---HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc------CHHHHHHHHHHcC---CCEEE
Q 028792           82 HGIIVVYDVTDQES---FNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVV------SYETAKAFADEIG---IPFME  149 (203)
Q Consensus        82 d~~i~v~d~~~~~s---~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~------~~~~~~~~~~~~~---~~~~~  149 (203)
                      +++|||+|+.+.+-   +..+...+..+....+ +..+.++++|+|+..+...      ..+.+.+.....+   +.++.
T Consensus        78 ~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp-~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~  156 (232)
T PF04670_consen   78 GVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSP-NIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFL  156 (232)
T ss_dssp             SEEEEEEETT-STCHHHHHHHHHHHHHHHHHST-T-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEE
T ss_pred             CEEEEEEEcccccHHHHHHHHHHHHHHHHHhCC-CCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEe
Confidence            99999999985443   3333444444445444 7889999999998653211      1122333444445   77999


Q ss_pred             EecCCCCCHHHHHHHHHHHHHHH
Q 028792          150 TSAKSATNVEQAFMAMAASIKNR  172 (203)
Q Consensus       150 ~Sa~~~~gi~~~~~~l~~~~~~~  172 (203)
                      ||..+ +.+-++|..+++.+.-+
T Consensus       157 TSI~D-~Sly~A~S~Ivq~LiP~  178 (232)
T PF04670_consen  157 TSIWD-ESLYEAWSKIVQKLIPN  178 (232)
T ss_dssp             E-TTS-THHHHHHHHHHHTTSTT
T ss_pred             ccCcC-cHHHHHHHHHHHHHccc
Confidence            99998 69999999998877643

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>cd04167 Snu114p Snu114p subfamily

Probab=99.75  E-value=2e-17  Score=121.94  Aligned_cols=113  Identities=22%  Similarity=0.252  Sum_probs=77.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCC-------------------CccccceeeEEEEEEE---CCeEEEEEEEeCCCh
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDSYLES-------------------YISTIGVDFKIRTVEQ---DGKTIKLQIWDTAGQ   67 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~~~~~-------------------~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~g~   67 (203)
                      +|+++|+.++|||||+++|+.......                   .....+.......+.+   ++..+.+++||+||+
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~   81 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH   81 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence            589999999999999999986432211                   0011111111122222   345688999999999


Q ss_pred             hhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 028792           68 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLT  126 (203)
Q Consensus        68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~  126 (203)
                      ..+.......+..+|++++|+|+.+..+... ..++..+.   ..+.|+++++||+|+.
T Consensus        82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~---~~~~p~iiviNK~D~~  136 (213)
T cd04167          82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAI---LEGLPIVLVINKIDRL  136 (213)
T ss_pred             cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHH---HcCCCEEEEEECcccC
Confidence            9888878888899999999999987665432 23333332   2358999999999975

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>PRK12736 elongation factor Tu; Reviewed

Probab=99.75  E-value=4.4e-17  Score=130.17  Aligned_cols=145  Identities=19%  Similarity=0.150  Sum_probs=93.9

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCC----------------CCCCccccceeeEEEEEEECCeEEEEEEEeCCChhh
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSY----------------LESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER   69 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~   69 (203)
                      ...++|+++|..++|||||+++|++...                ..+..+..+.+.  ....+......+.++|+||+..
T Consensus        10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~--~~~~~~~~~~~i~~iDtPGh~~   87 (394)
T PRK12736         10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINT--AHVEYETEKRHYAHVDCPGHAD   87 (394)
T ss_pred             CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEE--EeeEecCCCcEEEEEECCCHHH
Confidence            3568999999999999999999985211                011122233333  3333433446788999999988


Q ss_pred             hchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCcccC---HHHHHHHHHHcC-
Q 028792           70 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVN-KLLVGNKCDLTANKVVS---YETAKAFADEIG-  144 (203)
Q Consensus        70 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~iiv~nK~D~~~~~~~~---~~~~~~~~~~~~-  144 (203)
                      |.......+..+|++++|+|+.+...-. ....+..+...   +.| +++++||+|+.+.....   .+++..+....+ 
T Consensus        88 f~~~~~~~~~~~d~~llVvd~~~g~~~~-t~~~~~~~~~~---g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~  163 (394)
T PRK12736         88 YVKNMITGAAQMDGAILVVAATDGPMPQ-TREHILLARQV---GVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDF  163 (394)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCCchh-HHHHHHHHHHc---CCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCC
Confidence            8776666678899999999998632211 12233333322   567 67889999986433221   224445544443 


Q ss_pred             ----CCEEEEecCCCC
Q 028792          145 ----IPFMETSAKSAT  156 (203)
Q Consensus       145 ----~~~~~~Sa~~~~  156 (203)
                          ++++++||++|.
T Consensus       164 ~~~~~~ii~vSa~~g~  179 (394)
T PRK12736        164 PGDDIPVIRGSALKAL  179 (394)
T ss_pred             CcCCccEEEeeccccc
Confidence                589999999983

>COG2262 HflX GTPases [General function prediction only]

Probab=99.75  E-value=8.9e-17  Score=124.45  Aligned_cols=162  Identities=18%  Similarity=0.145  Sum_probs=116.8

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhc--hh------hhcc
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR--TI------TSSY   77 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--~~------~~~~   77 (203)
                      .....|.++|..|+|||||+|+|.+........-..+.+.....+.+.+ ...+.+-||-|.-+.-  .+      ....
T Consensus       190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTLEE  268 (411)
T COG2262         190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTLEE  268 (411)
T ss_pred             cCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHHHH
Confidence            4568999999999999999999997665444334445556666666654 2457788999943321  11      1223


Q ss_pred             ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCC
Q 028792           78 YRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATN  157 (203)
Q Consensus        78 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  157 (203)
                      ...+|++++|+|+++|.....+......+....-.+.|+|+|.||+|+.....    .......... ..+.+||++|+|
T Consensus       269 ~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~----~~~~~~~~~~-~~v~iSA~~~~g  343 (411)
T COG2262         269 VKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE----ILAELERGSP-NPVFISAKTGEG  343 (411)
T ss_pred             hhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh----hhhhhhhcCC-CeEEEEeccCcC
Confidence            57899999999999998777777777777776556799999999999765433    1111111112 699999999999


Q ss_pred             HHHHHHHHHHHHHHHh
Q 028792          158 VEQAFMAMAASIKNRM  173 (203)
Q Consensus       158 i~~~~~~l~~~~~~~~  173 (203)
                      ++.++..|...+....
T Consensus       344 l~~L~~~i~~~l~~~~  359 (411)
T COG2262         344 LDLLRERIIELLSGLR  359 (411)
T ss_pred             HHHHHHHHHHHhhhcc
Confidence            9999999999887543

>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.75  E-value=8.3e-18  Score=114.24  Aligned_cols=155  Identities=22%  Similarity=0.299  Sum_probs=120.3

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEE
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV   86 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (203)
                      +.-|++++|-.|+|||||++.|..++..... ||..  ..+..+.+.+  .+++.+|.+|+..-+..|..++..+|++++
T Consensus        19 K~gKllFlGLDNAGKTTLLHMLKdDrl~qhv-PTlH--PTSE~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv~   93 (193)
T KOG0077|consen   19 KFGKLLFLGLDNAGKTTLLHMLKDDRLGQHV-PTLH--PTSEELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIVY   93 (193)
T ss_pred             cCceEEEEeecCCchhhHHHHHccccccccC-CCcC--CChHHheecC--ceEEEEccccHHHHHHHHHHHHhhhceeEe
Confidence            4468999999999999999999988765543 4443  4455666777  889999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCcccCHHHHHH------HHHHc--------C---CCEE
Q 028792           87 VYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSYETAKA------FADEI--------G---IPFM  148 (203)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~------~~~~~--------~---~~~~  148 (203)
                      .+|+-|.+.+.+.+..++.+.... ....|+++.+||+|.....  +.++...      +....        +   +.++
T Consensus        94 lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~--se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evf  171 (193)
T KOG0077|consen   94 LVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA--SEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVF  171 (193)
T ss_pred             eeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc--cHHHHHHHHHHHHHhcccccccccCCCCCeEEEE
Confidence            999999999998888776654443 2579999999999987543  3333322      11111        1   3478


Q ss_pred             EEecCCCCCHHHHHHHHHHH
Q 028792          149 ETSAKSATNVEQAFMAMAAS  168 (203)
Q Consensus       149 ~~Sa~~~~gi~~~~~~l~~~  168 (203)
                      .||...+.|..+.|.|+...
T Consensus       172 mcsi~~~~gy~e~fkwl~qy  191 (193)
T KOG0077|consen  172 MCSIVRKMGYGEGFKWLSQY  191 (193)
T ss_pred             EEEEEccCccceeeeehhhh
Confidence            89999999999999988654

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.75  E-value=6.9e-17  Score=129.15  Aligned_cols=153  Identities=17%  Similarity=0.148  Sum_probs=98.1

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhcC------C----------CCCCCccccceeeEEEEEEECCeEEEEEEEeCCChh
Q 028792            5 YDYLFKLLLIGDSGVGKSCLLLRFADD------S----------YLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE   68 (203)
Q Consensus         5 ~~~~~~i~i~G~~~~GKSsli~~l~~~------~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~   68 (203)
                      ....++|+++|..++|||||+++|++.      .          ...+..+..+.+.  ..+.++.....+.+||+||+.
T Consensus         9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~--~~~~~~~~~~~~~liDtpGh~   86 (394)
T TIGR00485         9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINT--AHVEYETENRHYAHVDCPGHA   86 (394)
T ss_pred             CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceee--EEEEEcCCCEEEEEEECCchH
Confidence            345799999999999999999999732      0          0111123333333  333344444678999999998


Q ss_pred             hhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEE-EEEeCCCCCCCcccC---HHHHHHHHHHcC
Q 028792           69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKL-LVGNKCDLTANKVVS---YETAKAFADEIG  144 (203)
Q Consensus        69 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~i-iv~nK~D~~~~~~~~---~~~~~~~~~~~~  144 (203)
                      .|..........+|++++|+|+.+..... ....+..+...   +.|.+ +++||+|+.+.....   .+++..+....+
T Consensus        87 ~f~~~~~~~~~~~D~~ilVvda~~g~~~q-t~e~l~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~  162 (394)
T TIGR00485        87 DYVKNMITGAAQMDGAILVVSATDGPMPQ-TREHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYD  162 (394)
T ss_pred             HHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc---CCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcC
Confidence            88766666667899999999998632211 12222223222   56655 689999987543221   234556666554


Q ss_pred             -----CCEEEEecCCCC-CHHHHHH
Q 028792          145 -----IPFMETSAKSAT-NVEQAFM  163 (203)
Q Consensus       145 -----~~~~~~Sa~~~~-gi~~~~~  163 (203)
                           ++++++||.+|. |..++..
T Consensus       163 ~~~~~~~ii~vSa~~g~~g~~~~~~  187 (394)
T TIGR00485       163 FPGDDTPIIRGSALKALEGDAEWEA  187 (394)
T ss_pred             CCccCccEEECccccccccCCchhH
Confidence                 789999999875 4444443

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PRK12735 elongation factor Tu; Reviewed

Probab=99.74  E-value=6.6e-17  Score=129.22  Aligned_cols=148  Identities=16%  Similarity=0.159  Sum_probs=94.9

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhcC-------CC---------CCCCccccceeeEEEEEEECCeEEEEEEEeCCCh
Q 028792            4 EYDYLFKLLLIGDSGVGKSCLLLRFADD-------SY---------LESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ   67 (203)
Q Consensus         4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~-------~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~   67 (203)
                      +....++|+++|.+++|||||+++|++.       .+         ..+.....+.+..  ...+......+.++|+||+
T Consensus         8 ~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~--~~~~~~~~~~i~~iDtPGh   85 (396)
T PRK12735          8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTS--HVEYETANRHYAHVDCPGH   85 (396)
T ss_pred             CCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEe--eeEEcCCCcEEEEEECCCH
Confidence            4456799999999999999999999852       10         0111222333332  2333333467899999999


Q ss_pred             hhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEE-EEEeCCCCCCCccc---CHHHHHHHHHHc
Q 028792           68 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKL-LVGNKCDLTANKVV---SYETAKAFADEI  143 (203)
Q Consensus        68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~i-iv~nK~D~~~~~~~---~~~~~~~~~~~~  143 (203)
                      ..|.......+..+|++++|+|+.+.... .....+..+.   ..+.|.+ +++||+|+.+....   ..+++..+....
T Consensus        86 ~~f~~~~~~~~~~aD~~llVvda~~g~~~-qt~e~l~~~~---~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~  161 (396)
T PRK12735         86 ADYVKNMITGAAQMDGAILVVSAADGPMP-QTREHILLAR---QVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKY  161 (396)
T ss_pred             HHHHHHHHhhhccCCEEEEEEECCCCCch-hHHHHHHHHH---HcCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHc
Confidence            88776666777899999999999864321 1223333232   2357765 57999998643221   112445555554


Q ss_pred             C-----CCEEEEecCCCCC
Q 028792          144 G-----IPFMETSAKSATN  157 (203)
Q Consensus       144 ~-----~~~~~~Sa~~~~g  157 (203)
                      +     ++++++||.+|.+
T Consensus       162 ~~~~~~~~ii~~Sa~~g~n  180 (396)
T PRK12735        162 DFPGDDTPIIRGSALKALE  180 (396)
T ss_pred             CCCcCceeEEecchhcccc
Confidence            3     6799999999853

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.74  E-value=2.8e-16  Score=118.09  Aligned_cols=156  Identities=22%  Similarity=0.166  Sum_probs=114.4

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhh-------chhhhcccc
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF-------RTITSSYYR   79 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~~~~~~   79 (203)
                      -..+++++|+|++|||||+++|.+........+.++.+..+..+.+++  .++++.|+||.-.-       ........+
T Consensus        62 Gda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vlsv~R  139 (365)
T COG1163          62 GDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLSVAR  139 (365)
T ss_pred             CCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCcceeeeeec
Confidence            347899999999999999999998877666667777788888898988  88999999984321       223455679


Q ss_pred             CCcEEEEEEeCCChhh-HHHHHHHHH------------------------------------------------------
Q 028792           80 GAHGIIVVYDVTDQES-FNNVKQWLN------------------------------------------------------  104 (203)
Q Consensus        80 ~~d~~i~v~d~~~~~s-~~~~~~~~~------------------------------------------------------  104 (203)
                      +||++++|+|+....+ .+-+...+.                                                      
T Consensus       140 ~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~  219 (365)
T COG1163         140 NADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVL  219 (365)
T ss_pred             cCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEE
Confidence            9999999999985443 433333222                                                      


Q ss_pred             --------HHHh-h--cCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHHHHHH
Q 028792          105 --------EIDR-Y--ASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKN  171 (203)
Q Consensus       105 --------~l~~-~--~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~  171 (203)
                              .+.. .  .-..+|.+.|+||.|+..     .++...+.+..  .++.+||..+.|++++.+.|.+.+.-
T Consensus       220 Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~-----~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L~l  290 (365)
T COG1163         220 IREDVTLDDLIDALEGNRVYKPALYVVNKIDLPG-----LEELERLARKP--NSVPISAKKGINLDELKERIWDVLGL  290 (365)
T ss_pred             EecCCcHHHHHHHHhhcceeeeeEEEEecccccC-----HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhhCe
Confidence                    0000 0  112467899999999864     34444444443  89999999999999999999887653

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.73  E-value=1.2e-16  Score=121.28  Aligned_cols=112  Identities=20%  Similarity=0.172  Sum_probs=78.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC------------------CCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhc
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDSY------------------LESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR   71 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~   71 (203)
                      +|+++|.+++|||||+++|+...-                  +.+.....+.+.....+.+++  .+++++||||+..+.
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG~~df~   78 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKD--HRINIIDTPGHVDFT   78 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECC--EEEEEEECCCcHHHH
Confidence            589999999999999999973111                  111223334444445555655  788999999998888


Q ss_pred             hhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028792           72 TITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTA  127 (203)
Q Consensus        72 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~  127 (203)
                      ..+...+..+|++++|+|+.+...-. ....+..+.   ..+.|+++++||+|+.+
T Consensus        79 ~~~~~~l~~aD~ailVVDa~~g~~~~-t~~~~~~~~---~~~~p~ivviNK~D~~~  130 (270)
T cd01886          79 IEVERSLRVLDGAVAVFDAVAGVEPQ-TETVWRQAD---RYNVPRIAFVNKMDRTG  130 (270)
T ss_pred             HHHHHHHHHcCEEEEEEECCCCCCHH-HHHHHHHHH---HcCCCEEEEEECCCCCC
Confidence            88888999999999999998643211 122222232   23689999999999864

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>CHL00071 tufA elongation factor Tu

Probab=99.73  E-value=1.1e-16  Score=128.45  Aligned_cols=148  Identities=16%  Similarity=0.098  Sum_probs=96.1

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhcCCC----------------CCCCccccceeeEEEEEEECCeEEEEEEEeCCChh
Q 028792            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSY----------------LESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE   68 (203)
Q Consensus         5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~   68 (203)
                      ....++|+++|.+++|||||+++|++...                ..+..+..+.+.....  +.....++.++|+||+.
T Consensus         9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~--~~~~~~~~~~iDtPGh~   86 (409)
T CHL00071          9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVE--YETENRHYAHVDCPGHA   86 (409)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEE--EccCCeEEEEEECCChH
Confidence            34569999999999999999999986311                1111223333332223  33334678899999988


Q ss_pred             hhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCcccC---HHHHHHHHHHcC
Q 028792           69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVN-KLLVGNKCDLTANKVVS---YETAKAFADEIG  144 (203)
Q Consensus        69 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~iiv~nK~D~~~~~~~~---~~~~~~~~~~~~  144 (203)
                      .+.......+..+|++++|+|+..... ......+..+..   .+.| +|+++||+|+.+.....   .+++..+....+
T Consensus        87 ~~~~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~~~---~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~  162 (409)
T CHL00071         87 DYVKNMITGAAQMDGAILVVSAADGPM-PQTKEHILLAKQ---VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYD  162 (409)
T ss_pred             HHHHHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHHHHH---cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhC
Confidence            876666677789999999999986432 112223322322   2577 67889999987533221   124445554443


Q ss_pred             -----CCEEEEecCCCCCH
Q 028792          145 -----IPFMETSAKSATNV  158 (203)
Q Consensus       145 -----~~~~~~Sa~~~~gi  158 (203)
                           ++++++||.+|+++
T Consensus       163 ~~~~~~~ii~~Sa~~g~n~  181 (409)
T CHL00071        163 FPGDDIPIVSGSALLALEA  181 (409)
T ss_pred             CCCCcceEEEcchhhcccc
Confidence                 68999999998754

>cd01850 CDC_Septin CDC/Septin

Probab=99.73  E-value=2.3e-16  Score=120.11  Aligned_cols=145  Identities=18%  Similarity=0.253  Sum_probs=95.0

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCC----------CccccceeeEEEEEEECCeEEEEEEEeCCChhhhc-----
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFADDSYLES----------YISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR-----   71 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-----   71 (203)
                      ..++|+++|.+|+|||||+|+|++..+...          ..++.........+..++..+++.+|||||.....     
T Consensus         3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~   82 (276)
T cd01850           3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC   82 (276)
T ss_pred             cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence            568999999999999999999998776543          23344445555566667777899999999932210     


Q ss_pred             ---------------------hhhhccc--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 028792           72 ---------------------TITSSYY--RGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN  128 (203)
Q Consensus        72 ---------------------~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~  128 (203)
                                           ..+...+  ..+|+++|+++.+... +...  .++.+..... ..|+++|+||+|+...
T Consensus        83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~-l~~~--D~~~lk~l~~-~v~vi~VinK~D~l~~  158 (276)
T cd01850          83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHG-LKPL--DIEFMKRLSK-RVNIIPVIAKADTLTP  158 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCC-CCHH--HHHHHHHHhc-cCCEEEEEECCCcCCH
Confidence                                 0011222  2578888888876421 1111  0222333332 5899999999998653


Q ss_pred             cc--cCHHHHHHHHHHcCCCEEEEecCCC
Q 028792          129 KV--VSYETAKAFADEIGIPFMETSAKSA  155 (203)
Q Consensus       129 ~~--~~~~~~~~~~~~~~~~~~~~Sa~~~  155 (203)
                      .+  .....+.+.+..++++++.......
T Consensus       159 ~e~~~~k~~i~~~l~~~~i~~~~~~~~~~  187 (276)
T cd01850         159 EELKEFKQRIMEDIEEHNIKIYKFPEDEE  187 (276)
T ss_pred             HHHHHHHHHHHHHHHHcCCceECCCCCcc
Confidence            32  2345567778888999998776443

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.72  E-value=3.7e-16  Score=113.78  Aligned_cols=158  Identities=15%  Similarity=0.177  Sum_probs=95.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccc---eeeEEEEEEECCeEEEEEEEeCCChhhhch-----hhhccccC
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIG---VDFKIRTVEQDGKTIKLQIWDTAGQERFRT-----ITSSYYRG   80 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-----~~~~~~~~   80 (203)
                      ++|+++|.+|+|||||+|+|.+.........+.+   .+.....+.... ...+.+||+||......     +....+..
T Consensus         2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~   80 (197)
T cd04104           2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPK-FPNVTLWDLPGIGSTAFPPDDYLEEMKFSE   80 (197)
T ss_pred             eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCC-CCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence            7899999999999999999998654332211111   011111111111 23688999999643211     11223677


Q ss_pred             CcEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc-----------cCHHHHHH----HHHHcC
Q 028792           81 AHGIIVVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTANKV-----------VSYETAKA----FADEIG  144 (203)
Q Consensus        81 ~d~~i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~-----------~~~~~~~~----~~~~~~  144 (203)
                      +|+++++.+.    ++... ..++..+...   +.|+++|+||+|+.....           ...+++.+    .....+
T Consensus        81 ~d~~l~v~~~----~~~~~d~~~~~~l~~~---~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~  153 (197)
T cd04104          81 YDFFIIISST----RFSSNDVKLAKAIQCM---GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAG  153 (197)
T ss_pred             cCEEEEEeCC----CCCHHHHHHHHHHHHh---CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcC
Confidence            8998888542    22222 2344445443   579999999999853211           11111222    222222


Q ss_pred             ---CCEEEEecC--CCCCHHHHHHHHHHHHHHHhc
Q 028792          145 ---IPFMETSAK--SATNVEQAFMAMAASIKNRMA  174 (203)
Q Consensus       145 ---~~~~~~Sa~--~~~gi~~~~~~l~~~~~~~~~  174 (203)
                         -++|.+|+.  .+.++..+.+.|+..+.+.+.
T Consensus       154 ~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~  188 (197)
T cd04104         154 VSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKR  188 (197)
T ss_pred             CCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHH
Confidence               369999999  579999999999998886543

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.72  E-value=7.9e-17  Score=118.70  Aligned_cols=113  Identities=19%  Similarity=0.227  Sum_probs=77.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC--CC--------------CCccccceeeEEEEEEEC--------CeEEEEEEEeCC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDSY--LE--------------SYISTIGVDFKIRTVEQD--------GKTIKLQIWDTA   65 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~~--~~--------------~~~~~~~~~~~~~~~~~~--------~~~~~~~i~D~~   65 (203)
                      +|+++|..++|||||+.+|+...-  ..              +.....+.......+.+.        +..+.+++||||
T Consensus         2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP   81 (222)
T cd01885           2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP   81 (222)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence            689999999999999999974321  10              011112222222222232        346889999999


Q ss_pred             ChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 028792           66 GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLT  126 (203)
Q Consensus        66 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~  126 (203)
                      |+..|.......+..+|++++|+|+.+...... ...   +......+.|+++++||+|+.
T Consensus        82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t-~~~---l~~~~~~~~p~ilviNKiD~~  138 (222)
T cd01885          82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQT-ETV---LRQALKERVKPVLVINKIDRL  138 (222)
T ss_pred             CccccHHHHHHHHHhcCeeEEEEECCCCCCHHH-HHH---HHHHHHcCCCEEEEEECCCcc
Confidence            999999888899999999999999987654332 222   222222367999999999975

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>cd04169 RF3 RF3 subfamily

Probab=99.72  E-value=4.1e-16  Score=118.20  Aligned_cols=114  Identities=16%  Similarity=0.134  Sum_probs=76.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCC----------------------CccccceeeEEEEEEECCeEEEEEEEeCCC
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDSYLES----------------------YISTIGVDFKIRTVEQDGKTIKLQIWDTAG   66 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g   66 (203)
                      -+|+++|++|+|||||+++|+...-...                      .....+.......+.+.  ..++++|||||
T Consensus         3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~--~~~i~liDTPG   80 (267)
T cd04169           3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYR--DCVINLLDTPG   80 (267)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeC--CEEEEEEECCC
Confidence            3699999999999999999974211000                      00111222223344444  48899999999


Q ss_pred             hhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 028792           67 QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN  128 (203)
Q Consensus        67 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~  128 (203)
                      +.++.......+..+|++++|+|+++.... ....++....   ..+.|+++++||+|+...
T Consensus        81 ~~df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~~---~~~~P~iivvNK~D~~~a  138 (267)
T cd04169          81 HEDFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVCR---LRGIPIITFINKLDREGR  138 (267)
T ss_pred             chHHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHHHHH---hcCCCEEEEEECCccCCC
Confidence            988877677778999999999999875321 1223333222   236899999999997654

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.71  E-value=2.2e-16  Score=126.59  Aligned_cols=148  Identities=23%  Similarity=0.262  Sum_probs=94.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCC--CC-------------------------------CCccccceeeEEEEEEECCe
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDSY--LE-------------------------------SYISTIGVDFKIRTVEQDGK   55 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~~--~~-------------------------------~~~~~~~~~~~~~~~~~~~~   55 (203)
                      ++|+++|+.++|||||+.+|+...-  ..                               +.....+.+.....+..++ 
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~-   79 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDK-   79 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCC-
Confidence            5899999999999999999973221  10                               0111223333333444444 


Q ss_pred             EEEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCH--
Q 028792           56 TIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSY--  133 (203)
Q Consensus        56 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~--  133 (203)
                       .++.++|+||+..|.......+..+|++++|+|+.....-. ....+..+....  ..++++++||+|+.+......  
T Consensus        80 -~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~q-t~~~~~~~~~~~--~~~iivviNK~D~~~~~~~~~~~  155 (406)
T TIGR02034        80 -RKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQ-TRRHSYIASLLG--IRHVVLAVNKMDLVDYDEEVFEN  155 (406)
T ss_pred             -eEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccc-cHHHHHHHHHcC--CCcEEEEEEecccccchHHHHHH
Confidence             67899999999888766666788999999999997543211 111122222221  246888999999865322111  


Q ss_pred             --HHHHHHHHHcC---CCEEEEecCCCCCHHHH
Q 028792          134 --ETAKAFADEIG---IPFMETSAKSATNVEQA  161 (203)
Q Consensus       134 --~~~~~~~~~~~---~~~~~~Sa~~~~gi~~~  161 (203)
                        ++...+....+   ++++++||++|+|+++.
T Consensus       156 i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~~  188 (406)
T TIGR02034       156 IKKDYLAFAEQLGFRDVTFIPLSALKGDNVVSR  188 (406)
T ss_pred             HHHHHHHHHHHcCCCCccEEEeecccCCCCccc
Confidence              22233334433   57999999999999863

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>PRK00049 elongation factor Tu; Reviewed

Probab=99.70  E-value=9.2e-16  Score=122.60  Aligned_cols=147  Identities=16%  Similarity=0.163  Sum_probs=94.6

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhcCCC----------------CCCCccccceeeEEEEEEECCeEEEEEEEeCCChh
Q 028792            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSY----------------LESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE   68 (203)
Q Consensus         5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~   68 (203)
                      ....++|+++|..++|||||+++|++...                ..+..+..+.+..  ...+......+.++|+||+.
T Consensus         9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~--~~~~~~~~~~i~~iDtPG~~   86 (396)
T PRK00049          9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTA--HVEYETEKRHYAHVDCPGHA   86 (396)
T ss_pred             CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeee--EEEEcCCCeEEEEEECCCHH
Confidence            34679999999999999999999986211                0111223333333  33333334678899999998


Q ss_pred             hhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEE-EEEeCCCCCCCcccC---HHHHHHHHHHc-
Q 028792           69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKL-LVGNKCDLTANKVVS---YETAKAFADEI-  143 (203)
Q Consensus        69 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~i-iv~nK~D~~~~~~~~---~~~~~~~~~~~-  143 (203)
                      .|.......+..+|++++|+|+.+... ......+..+..   .+.|.+ +++||+|+.+.....   ..++..+.... 
T Consensus        87 ~f~~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~~~---~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~  162 (396)
T PRK00049         87 DYVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYD  162 (396)
T ss_pred             HHHHHHHhhhccCCEEEEEEECCCCCc-hHHHHHHHHHHH---cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcC
Confidence            877666677889999999999986432 112233333332   257876 579999986432211   12344444433 


Q ss_pred             ----CCCEEEEecCCCCC
Q 028792          144 ----GIPFMETSAKSATN  157 (203)
Q Consensus       144 ----~~~~~~~Sa~~~~g  157 (203)
                          +++++++||+++.+
T Consensus       163 ~~~~~~~iv~iSa~~g~~  180 (396)
T PRK00049        163 FPGDDTPIIRGSALKALE  180 (396)
T ss_pred             CCccCCcEEEeecccccC
Confidence                36899999998753

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.70  E-value=1.3e-16  Score=117.57  Aligned_cols=162  Identities=19%  Similarity=0.233  Sum_probs=109.3

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEE-EEECCeEEEEEEEeCCChhh-------hchhhhccc
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRT-VEQDGKTIKLQIWDTAGQER-------FRTITSSYY   78 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~D~~g~~~-------~~~~~~~~~   78 (203)
                      ..++|+++|.+|+|||||||+|+.+...+...-..+.+..... ..+++  -.+++||+||-..       +.......+
T Consensus        38 ~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~d~l  115 (296)
T COG3596          38 EPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYRDYL  115 (296)
T ss_pred             CceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHHHHHh
Confidence            5689999999999999999999976655443222222222222 22333  4589999999443       677788889


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc-------ccCHHHHH-----------HHH
Q 028792           79 RGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANK-------VVSYETAK-----------AFA  140 (203)
Q Consensus        79 ~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~-------~~~~~~~~-----------~~~  140 (203)
                      ...|++++++++.|++--.+...+.+.+....  +.++++++|.+|...+-       ......++           +++
T Consensus       116 ~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~--~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~  193 (296)
T COG3596         116 PKLDLVLWLIKADDRALGTDEDFLRDVIILGL--DKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRLF  193 (296)
T ss_pred             hhccEEEEeccCCCccccCCHHHHHHHHHhcc--CceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999874333344444443322  37999999999986541       11111122           122


Q ss_pred             HHcCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 028792          141 DEIGIPFMETSAKSATNVEQAFMAMAASIKNRM  173 (203)
Q Consensus       141 ~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~  173 (203)
                      +. --|++..+...++|++++...++..+....
T Consensus       194 q~-V~pV~~~~~r~~wgl~~l~~ali~~lp~e~  225 (296)
T COG3596         194 QE-VKPVVAVSGRLPWGLKELVRALITALPVEA  225 (296)
T ss_pred             hh-cCCeEEeccccCccHHHHHHHHHHhCcccc
Confidence            22 247888889999999999999999876433

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.70  E-value=6.6e-16  Score=103.03  Aligned_cols=106  Identities=25%  Similarity=0.223  Sum_probs=70.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCC-CCCccccceeeEEEEEEECCeEEEEEEEeCCChhhh---------chhhhcccc
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDSYL-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF---------RTITSSYYR   79 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~~~~~   79 (203)
                      +|+|+|.+|+|||||+|+|++.... ....+..+.......+..++  ..+.++|+||....         .......+.
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~   78 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNN--KKFILVDTPGINDGESQDNDGKEIRKFLEQIS   78 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETT--EEEEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred             CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeece--eeEEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence            6899999999999999999985432 22223333344445556677  45579999995321         111223348


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeC
Q 028792           80 GAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNK  122 (203)
Q Consensus        80 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK  122 (203)
                      .+|++++|+|++++.. +.....++.+   . .+.|+++|+||
T Consensus        79 ~~d~ii~vv~~~~~~~-~~~~~~~~~l---~-~~~~~i~v~NK  116 (116)
T PF01926_consen   79 KSDLIIYVVDASNPIT-EDDKNILREL---K-NKKPIILVLNK  116 (116)
T ss_dssp             TESEEEEEEETTSHSH-HHHHHHHHHH---H-TTSEEEEEEES
T ss_pred             HCCEEEEEEECCCCCC-HHHHHHHHHH---h-cCCCEEEEEcC
Confidence            8999999999877422 2233343444   2 46899999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>PLN03126 Elongation factor Tu; Provisional

Probab=99.69  E-value=1e-15  Score=124.30  Aligned_cols=147  Identities=16%  Similarity=0.103  Sum_probs=96.3

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhcCC------C----------CCCCccccceeeEEEEEEECCeEEEEEEEeCCChh
Q 028792            5 YDYLFKLLLIGDSGVGKSCLLLRFADDS------Y----------LESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE   68 (203)
Q Consensus         5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~------~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~   68 (203)
                      ....++|+++|.+++|||||+++|+...      .          ..+.....+.+.....+..++  ..+.++|+||+.
T Consensus        78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~--~~i~liDtPGh~  155 (478)
T PLN03126         78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETEN--RHYAHVDCPGHA  155 (478)
T ss_pred             cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCC--cEEEEEECCCHH
Confidence            3456899999999999999999998521      1          112222233333333333333  678999999999


Q ss_pred             hhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCcccC---HHHHHHHHHHc-
Q 028792           69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVN-KLLVGNKCDLTANKVVS---YETAKAFADEI-  143 (203)
Q Consensus        69 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~iiv~nK~D~~~~~~~~---~~~~~~~~~~~-  143 (203)
                      .|.......+..+|++++|+|+.+.... ...+++..+...   ++| +++++||+|+.+.....   .+++..+.... 
T Consensus       156 ~f~~~~~~g~~~aD~ailVVda~~G~~~-qt~e~~~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g  231 (478)
T PLN03126        156 DYVKNMITGAAQMDGAILVVSGADGPMP-QTKEHILLAKQV---GVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYE  231 (478)
T ss_pred             HHHHHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcC
Confidence            8877777777899999999999864321 223333333322   567 67889999987532221   12344554443 


Q ss_pred             ----CCCEEEEecCCCCC
Q 028792          144 ----GIPFMETSAKSATN  157 (203)
Q Consensus       144 ----~~~~~~~Sa~~~~g  157 (203)
                          +++++++|+.+|.+
T Consensus       232 ~~~~~~~~vp~Sa~~g~n  249 (478)
T PLN03126        232 FPGDDIPIISGSALLALE  249 (478)
T ss_pred             CCcCcceEEEEEcccccc
Confidence                46899999998854

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.69  E-value=3.3e-15  Score=119.27  Aligned_cols=160  Identities=19%  Similarity=0.162  Sum_probs=119.7

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECC-eEEEEEEEeCCChhhhchhhhccccCCcEE
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDG-KTIKLQIWDTAGQERFRTITSSYYRGAHGI   84 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (203)
                      .+..=|++||.-.-|||||+..+-.........-.++.+.....+..+. ..-.+.++||||++.|..++..-..-+|++
T Consensus         3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIa   82 (509)
T COG0532           3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIA   82 (509)
T ss_pred             CCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEE
Confidence            3556799999999999999999988777666556666677777776642 124688999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-------HcC--CCEEEEecCCC
Q 028792           85 IVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFAD-------EIG--IPFMETSAKSA  155 (203)
Q Consensus        85 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-------~~~--~~~~~~Sa~~~  155 (203)
                      |+|+|++|.--    .+..+.+......+.|+++.+||+|..+.+   .+....-..       .++  ..++++||++|
T Consensus        83 ILVVa~dDGv~----pQTiEAI~hak~a~vP~iVAiNKiDk~~~n---p~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg  155 (509)
T COG0532          83 ILVVAADDGVM----PQTIEAINHAKAAGVPIVVAINKIDKPEAN---PDKVKQELQEYGLVPEEWGGDVIFVPVSAKTG  155 (509)
T ss_pred             EEEEEccCCcc----hhHHHHHHHHHHCCCCEEEEEecccCCCCC---HHHHHHHHHHcCCCHhhcCCceEEEEeeccCC
Confidence            99999997322    233333444455589999999999987432   222222222       222  56999999999


Q ss_pred             CCHHHHHHHHHHHHHHH
Q 028792          156 TNVEQAFMAMAASIKNR  172 (203)
Q Consensus       156 ~gi~~~~~~l~~~~~~~  172 (203)
                      +|+++++..+.-....+
T Consensus       156 ~Gi~eLL~~ill~aev~  172 (509)
T COG0532         156 EGIDELLELILLLAEVL  172 (509)
T ss_pred             CCHHHHHHHHHHHHHHH
Confidence            99999999987755544

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.69  E-value=1.8e-15  Score=124.33  Aligned_cols=117  Identities=15%  Similarity=0.139  Sum_probs=79.3

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhc--CCCCC--------------------CCccccceeeEEEEEEECCeEEEEEEE
Q 028792            5 YDYLFKLLLIGDSGVGKSCLLLRFAD--DSYLE--------------------SYISTIGVDFKIRTVEQDGKTIKLQIW   62 (203)
Q Consensus         5 ~~~~~~i~i~G~~~~GKSsli~~l~~--~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~   62 (203)
                      .++.-+|+|+|++++|||||+++|+.  +....                    ......+.......+.+++  +.+++|
T Consensus         7 ~~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~--~~inli   84 (526)
T PRK00741          7 VAKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRD--CLINLL   84 (526)
T ss_pred             hhcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECC--EEEEEE
Confidence            34567999999999999999999973  11100                    0001112222223344444  789999


Q ss_pred             eCCChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028792           63 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTA  127 (203)
Q Consensus        63 D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~  127 (203)
                      ||||+..+.......+..+|++|+|+|+++.... ....++....   ..+.|+++++||+|+..
T Consensus        85 DTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~---~~~iPiiv~iNK~D~~~  145 (526)
T PRK00741         85 DTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCR---LRDTPIFTFINKLDRDG  145 (526)
T ss_pred             ECCCchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHH---hcCCCEEEEEECCcccc
Confidence            9999988887777788999999999999874321 2233333322   24789999999999754

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.69  E-value=1.6e-15  Score=115.45  Aligned_cols=148  Identities=20%  Similarity=0.274  Sum_probs=92.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCC------------------ccccceeeEEEEEEECCeEEEEEEEeCCChhhhc
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDSYLESY------------------ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR   71 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~   71 (203)
                      +|+++|.+|+|||||+++|+........                  ....+.......+.+++  ..+++||+||...+.
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~--~~i~liDtPG~~~f~   78 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKG--HKINLIDTPGYADFV   78 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECC--EEEEEEECcCHHHHH
Confidence            5899999999999999999743211000                  01112222333444554  678999999998887


Q ss_pred             hhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEE-
Q 028792           72 TITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMET-  150 (203)
Q Consensus        72 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~-  150 (203)
                      ..+...+..+|++++|+|+++.........| ..+.   ..+.|.++++||+|.....  ..+...++....+.+++++ 
T Consensus        79 ~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~-~~~~---~~~~p~iivvNK~D~~~~~--~~~~~~~l~~~~~~~~~~~~  152 (268)
T cd04170          79 GETRAALRAADAALVVVSAQSGVEVGTEKLW-EFAD---EAGIPRIIFINKMDRERAD--FDKTLAALQEAFGRPVVPLQ  152 (268)
T ss_pred             HHHHHHHHHCCEEEEEEeCCCCCCHHHHHHH-HHHH---HcCCCEEEEEECCccCCCC--HHHHHHHHHHHhCCCeEEEE
Confidence            7788889999999999999876543322222 2222   2368999999999987542  1233344444455554443 


Q ss_pred             -ecCCCCCHHHHHHHH
Q 028792          151 -SAKSATNVEQAFMAM  165 (203)
Q Consensus       151 -Sa~~~~gi~~~~~~l  165 (203)
                       +..++.++..+.+.+
T Consensus       153 ip~~~~~~~~~~vd~~  168 (268)
T cd04170         153 LPIGEGDDFKGVVDLL  168 (268)
T ss_pred             ecccCCCceeEEEEcc
Confidence             455555554444333

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>PLN03127 Elongation factor Tu; Provisional

Probab=99.69  E-value=1.4e-15  Score=122.77  Aligned_cols=157  Identities=16%  Similarity=0.099  Sum_probs=95.3

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcC------C----------CCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhh
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADD------S----------YLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER   69 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~------~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~   69 (203)
                      ...++|+++|..++|||||+++|.+.      .          .+.+..+..+.+.....  +.....++.++|+||+..
T Consensus        59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~--~~~~~~~i~~iDtPGh~~  136 (447)
T PLN03127         59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVE--YETAKRHYAHVDCPGHAD  136 (447)
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEE--EcCCCeEEEEEECCCccc
Confidence            35689999999999999999999621      1          01122233344433333  333446789999999987


Q ss_pred             hchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCcccCH---HHHHHHHHHc--
Q 028792           70 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVN-KLLVGNKCDLTANKVVSY---ETAKAFADEI--  143 (203)
Q Consensus        70 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~iiv~nK~D~~~~~~~~~---~~~~~~~~~~--  143 (203)
                      |.......+..+|++++|+|+.+... ....+.+..+.   ..+.| +++++||+|+.+......   +++.++....  
T Consensus       137 f~~~~~~g~~~aD~allVVda~~g~~-~qt~e~l~~~~---~~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~  212 (447)
T PLN03127        137 YVKNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLAR---QVGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKF  212 (447)
T ss_pred             hHHHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHHH---HcCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCC
Confidence            76655556677999999999976432 11222222232   23578 467899999875322111   1233333322  


Q ss_pred             ---CCCEEEEecC---CCCC-------HHHHHHHHHHH
Q 028792          144 ---GIPFMETSAK---SATN-------VEQAFMAMAAS  168 (203)
Q Consensus       144 ---~~~~~~~Sa~---~~~g-------i~~~~~~l~~~  168 (203)
                         .++++++|+.   +|.|       +.++++.|.+.
T Consensus       213 ~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~  250 (447)
T PLN03127        213 PGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEY  250 (447)
T ss_pred             CCCcceEEEeccceeecCCCcccccchHHHHHHHHHHh
Confidence               3678888876   4544       44555555443

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.68  E-value=9.5e-16  Score=123.87  Aligned_cols=148  Identities=18%  Similarity=0.199  Sum_probs=98.8

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCC-------------------------------CCCCccccceeeEEEEEEECCe
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFADDSY-------------------------------LESYISTIGVDFKIRTVEQDGK   55 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~   55 (203)
                      ..++|+++|+.++|||||+.+|+...-                               ..+.....+.+.....+..  .
T Consensus         6 ~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~--~   83 (447)
T PLN00043          6 VHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFET--T   83 (447)
T ss_pred             ceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecC--C
Confidence            458999999999999999999873110                               0111222333333333333  4


Q ss_pred             EEEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChhhHH-------HHHHHHHHHHhhcCCCC-cEEEEEeCCCCCC
Q 028792           56 TIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFN-------NVKQWLNEIDRYASENV-NKLLVGNKCDLTA  127 (203)
Q Consensus        56 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~-------~~~~~~~~l~~~~~~~~-p~iiv~nK~D~~~  127 (203)
                      ...++++|+||+..|.......+..+|++|+|+|+.+. .|+       ..+..+..+..   .+. ++++++||+|+.+
T Consensus        84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~---~gi~~iIV~vNKmD~~~  159 (447)
T PLN00043         84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFT---LGVKQMICCCNKMDATT  159 (447)
T ss_pred             CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHH---cCCCcEEEEEEcccCCc
Confidence            47889999999999988888889999999999999863 121       22232222222   245 4688899999752


Q ss_pred             Cc--c----cCHHHHHHHHHHcC-----CCEEEEecCCCCCHHH
Q 028792          128 NK--V----VSYETAKAFADEIG-----IPFMETSAKSATNVEQ  160 (203)
Q Consensus       128 ~~--~----~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~  160 (203)
                      ..  .    ...+++..+++..+     ++++++||++|+|+.+
T Consensus       160 ~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~  203 (447)
T PLN00043        160 PKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE  203 (447)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence            11  1    11345666666655     6799999999999864

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.68  E-value=6e-16  Score=125.96  Aligned_cols=153  Identities=22%  Similarity=0.218  Sum_probs=96.0

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhcCCC--CC-------------------------------CCccccceeeEEEEEE
Q 028792            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSY--LE-------------------------------SYISTIGVDFKIRTVE   51 (203)
Q Consensus         5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~--~~-------------------------------~~~~~~~~~~~~~~~~   51 (203)
                      ....++|+++|..++|||||+.+|+...-  ..                               +....++.+.....+.
T Consensus        24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~  103 (474)
T PRK05124         24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS  103 (474)
T ss_pred             ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence            35669999999999999999999974321  10                               0011122333333333


Q ss_pred             ECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc
Q 028792           52 QDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVV  131 (203)
Q Consensus        52 ~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~  131 (203)
                      .++  ..+.++|+||+..|.......+..+|++++|+|+.+.-.-. .......+....  ..|+++++||+|+.+....
T Consensus       104 ~~~--~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~q-t~~~~~l~~~lg--~~~iIvvvNKiD~~~~~~~  178 (474)
T PRK05124        104 TEK--RKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQ-TRRHSFIATLLG--IKHLVVAVNKMDLVDYSEE  178 (474)
T ss_pred             cCC--cEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCcccc-chHHHHHHHHhC--CCceEEEEEeeccccchhH
Confidence            333  67899999998887665555579999999999997542110 111111122221  2478899999998743221


Q ss_pred             CHHH----HHHHHHHc----CCCEEEEecCCCCCHHHHH
Q 028792          132 SYET----AKAFADEI----GIPFMETSAKSATNVEQAF  162 (203)
Q Consensus       132 ~~~~----~~~~~~~~----~~~~~~~Sa~~~~gi~~~~  162 (203)
                      ..++    +..+....    .++++++||++|+|+++.-
T Consensus       179 ~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~  217 (474)
T PRK05124        179 VFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQS  217 (474)
T ss_pred             HHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCccccc
Confidence            1222    22333333    3789999999999998753

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.68  E-value=1.2e-15  Score=117.85  Aligned_cols=81  Identities=20%  Similarity=0.239  Sum_probs=54.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEE---------------------ECC-eEEEEEEEeCCCh-
Q 028792           11 LLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVE---------------------QDG-KTIKLQIWDTAGQ-   67 (203)
Q Consensus        11 i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~-~~~~~~i~D~~g~-   67 (203)
                      |+++|.|++|||||+++|.+........|..+.+.......                     .++ ..+.+++||+||. 
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv   80 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV   80 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence            57999999999999999998765432223322222221111                     122 3367999999996 


Q ss_pred             ---hhhchhhhc---cccCCcEEEEEEeCC
Q 028792           68 ---ERFRTITSS---YYRGAHGIIVVYDVT   91 (203)
Q Consensus        68 ---~~~~~~~~~---~~~~~d~~i~v~d~~   91 (203)
                         .+..++...   .++++|++++|+|++
T Consensus        81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~  110 (318)
T cd01899          81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS  110 (318)
T ss_pred             CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence               334444334   489999999999997

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.68  E-value=6.8e-16  Score=124.76  Aligned_cols=150  Identities=18%  Similarity=0.165  Sum_probs=96.7

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcC--CCC-----------------------------CCCccccceeeEEEEEEECC
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADD--SYL-----------------------------ESYISTIGVDFKIRTVEQDG   54 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~--~~~-----------------------------~~~~~~~~~~~~~~~~~~~~   54 (203)
                      ...++|+++|+.++|||||+.+|+..  ...                             .+.....+.+.....+..+ 
T Consensus         5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~-   83 (446)
T PTZ00141          5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP-   83 (446)
T ss_pred             CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC-
Confidence            35689999999999999999999741  110                             1112223333333334444 


Q ss_pred             eEEEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChh---hH---HHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCC
Q 028792           55 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQE---SF---NNVKQWLNEIDRYASENVN-KLLVGNKCDLTA  127 (203)
Q Consensus        55 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~l~~~~~~~~p-~iiv~nK~D~~~  127 (203)
                       ...++++|+||+.+|.......+..+|++++|+|+.+..   .+   ......+..+..   .+.| +|+++||+|...
T Consensus        84 -~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~---~gi~~iiv~vNKmD~~~  159 (446)
T PTZ00141         84 -KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT---LGVKQMIVCINKMDDKT  159 (446)
T ss_pred             -CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH---cCCCeEEEEEEcccccc
Confidence             478899999999998887878889999999999998642   01   122222222322   2555 678999999532


Q ss_pred             --CcccC----HHHHHHHHHHc-----CCCEEEEecCCCCCHHH
Q 028792          128 --NKVVS----YETAKAFADEI-----GIPFMETSAKSATNVEQ  160 (203)
Q Consensus       128 --~~~~~----~~~~~~~~~~~-----~~~~~~~Sa~~~~gi~~  160 (203)
                        ..+..    .+++.++....     +++++++|+.+|+|+.+
T Consensus       160 ~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        160 VNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             chhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence              11111    22334444433     36799999999999864

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.66  E-value=2.1e-14  Score=104.51  Aligned_cols=159  Identities=17%  Similarity=0.218  Sum_probs=98.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCC--ccccceeeEEEEEEECCeEEEEEEEeCCChhhhch-----------hhh
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDSYLESY--ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT-----------ITS   75 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-----------~~~   75 (203)
                      ++|+++|.+|+|||||+|+|++.......  .+..+..........++  ..+.++||||......           ...
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~   78 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLS   78 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence            47999999999999999999987654322  12233333344444555  5789999999543211           112


Q ss_pred             ccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCccc------CHHHHHHHHHHcCCCE
Q 028792           76 SYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYAS--ENVNKLLVGNKCDLTANKVV------SYETAKAFADEIGIPF  147 (203)
Q Consensus        76 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~p~iiv~nK~D~~~~~~~------~~~~~~~~~~~~~~~~  147 (203)
                      ......|+++||+++.+ .+-. -...++.+.....  .-.++++++|+.|......+      ....+..+.+..+..+
T Consensus        79 ~~~~g~~~illVi~~~~-~t~~-d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~  156 (196)
T cd01852          79 LSAPGPHAFLLVVPLGR-FTEE-EEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRY  156 (196)
T ss_pred             hcCCCCEEEEEEEECCC-cCHH-HHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeE
Confidence            23467899999999876 2211 1222333333211  12578899999997654311      1134455556656666


Q ss_pred             EEEec-----CCCCCHHHHHHHHHHHHHH
Q 028792          148 METSA-----KSATNVEQAFMAMAASIKN  171 (203)
Q Consensus       148 ~~~Sa-----~~~~gi~~~~~~l~~~~~~  171 (203)
                      +..+.     ..+.++.++++.+-+.+.+
T Consensus       157 ~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~  185 (196)
T cd01852         157 VAFNNKAKGEEQEQQVKELLAKVESMVKE  185 (196)
T ss_pred             EEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence            65553     4577888888888887765

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>PRK13351 elongation factor G; Reviewed

Probab=99.66  E-value=2.3e-15  Score=128.25  Aligned_cols=117  Identities=18%  Similarity=0.232  Sum_probs=83.0

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhcCCCC--------CC----------CccccceeeEEEEEEECCeEEEEEEEeCCC
Q 028792            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYL--------ES----------YISTIGVDFKIRTVEQDGKTIKLQIWDTAG   66 (203)
Q Consensus         5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~--------~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g   66 (203)
                      .+...+|+|+|..++|||||+++|+...-.        ..          .....+.......+.+++  ..+++|||||
T Consensus         5 ~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~--~~i~liDtPG   82 (687)
T PRK13351          5 LMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDN--HRINLIDTPG   82 (687)
T ss_pred             cccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECC--EEEEEEECCC
Confidence            345689999999999999999999842110        00          011122223333444554  7899999999


Q ss_pred             hhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028792           67 QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTA  127 (203)
Q Consensus        67 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~  127 (203)
                      +..+...+...+..+|++++|+|+++.........| ..+.   ..+.|+++++||+|+..
T Consensus        83 ~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~---~~~~p~iiviNK~D~~~  139 (687)
T PRK13351         83 HIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQAD---RYGIPRLIFINKMDRVG  139 (687)
T ss_pred             cHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHH---hcCCCEEEEEECCCCCC
Confidence            998888888899999999999999886654433333 2222   23689999999999864

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.66  E-value=1e-15  Score=120.66  Aligned_cols=164  Identities=22%  Similarity=0.252  Sum_probs=109.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCC-CCccccceeeEEEEEEECCeEEEEEEEeCCChhh-hchh--------hhcc
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFADDSYLE-SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER-FRTI--------TSSY   77 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~--------~~~~   77 (203)
                      -++|+|+|+||+|||||+|.|.+....- ...+.++.+.....+.++|  +.+.+.||.|..+ -...        ...-
T Consensus       268 gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G--~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~  345 (531)
T KOG1191|consen  268 GLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNG--VPVRLSDTAGIREESNDGIEALGIERARKR  345 (531)
T ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCC--eEEEEEeccccccccCChhHHHhHHHHHHH
Confidence            4899999999999999999999877653 3446666666667777888  7788999999654 1111        1234


Q ss_pred             ccCCcEEEEEEeCC--ChhhHHHHHHHHHHHHhh------cCCCCcEEEEEeCCCCCCC-cccCHHHHHHHHHHcC---C
Q 028792           78 YRGAHGIIVVYDVT--DQESFNNVKQWLNEIDRY------ASENVNKLLVGNKCDLTAN-KVVSYETAKAFADEIG---I  145 (203)
Q Consensus        78 ~~~~d~~i~v~d~~--~~~s~~~~~~~~~~l~~~------~~~~~p~iiv~nK~D~~~~-~~~~~~~~~~~~~~~~---~  145 (203)
                      +..+|++++|+|+.  +-++-..+...++.....      .....|++++.||.|+... .++...- ..+....+   .
T Consensus       346 ~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~-~~~~~~~~~~~~  424 (531)
T KOG1191|consen  346 IERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIP-VVYPSAEGRSVF  424 (531)
T ss_pred             HhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCc-eeccccccCccc
Confidence            68899999999994  333333333333332111      1134789999999999765 2222211 11111111   2


Q ss_pred             C-EEEEecCCCCCHHHHHHHHHHHHHHHhc
Q 028792          146 P-FMETSAKSATNVEQAFMAMAASIKNRMA  174 (203)
Q Consensus       146 ~-~~~~Sa~~~~gi~~~~~~l~~~~~~~~~  174 (203)
                      + +.++|+++++|++.+.+.|.+.+....-
T Consensus       425 ~i~~~vs~~tkeg~~~L~~all~~~~~~~~  454 (531)
T KOG1191|consen  425 PIVVEVSCTTKEGCERLSTALLNIVERLVV  454 (531)
T ss_pred             ceEEEeeechhhhHHHHHHHHHHHHHHhhc
Confidence            3 5569999999999999999988775443

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.65  E-value=5.4e-16  Score=109.71  Aligned_cols=117  Identities=26%  Similarity=0.380  Sum_probs=71.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEE-CCeEEEEEEEeCCChhhhchhhhc---cccCCcE
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQ-DGKTIKLQIWDTAGQERFRTITSS---YYRGAHG   83 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~---~~~~~d~   83 (203)
                      .-.|+++|+.|+|||+|+..|..+...+...+. ....   .+.. ......+.++|+||+.+.+.....   ....+.+
T Consensus         3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~---~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~   78 (181)
T PF09439_consen    3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNI---AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKG   78 (181)
T ss_dssp             --EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEE---ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEE
T ss_pred             CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCc---eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCE
Confidence            357999999999999999999988654443322 2111   1111 222346789999999988764443   3788999


Q ss_pred             EEEEEeCCC-hhhHHHHHH-HHHHHHhh--cCCCCcEEEEEeCCCCCCC
Q 028792           84 IIVVYDVTD-QESFNNVKQ-WLNEIDRY--ASENVNKLLVGNKCDLTAN  128 (203)
Q Consensus        84 ~i~v~d~~~-~~s~~~~~~-~~~~l~~~--~~~~~p~iiv~nK~D~~~~  128 (203)
                      +|||+|.+. +..+.++.+ ++..+...  .....|++|+.||.|+...
T Consensus        79 IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A  127 (181)
T PF09439_consen   79 IIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA  127 (181)
T ss_dssp             EEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred             EEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence            999999974 444555555 44444322  2357899999999998753

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.65  E-value=3.4e-15  Score=125.94  Aligned_cols=151  Identities=23%  Similarity=0.229  Sum_probs=94.5

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhcCCCCCC-------------C--------------------ccccceeeEEEEEE
Q 028792            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLES-------------Y--------------------ISTIGVDFKIRTVE   51 (203)
Q Consensus         5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~-------------~--------------------~~~~~~~~~~~~~~   51 (203)
                      ....++|+++|.+++|||||+++|+.....-.             .                    ....+.+.....+.
T Consensus        21 ~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~  100 (632)
T PRK05506         21 RKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFA  100 (632)
T ss_pred             CCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEc
Confidence            34568999999999999999999985321110             0                    01112222223333


Q ss_pred             ECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc
Q 028792           52 QDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVV  131 (203)
Q Consensus        52 ~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~  131 (203)
                      .++  .++.++|+||+..+.......+..+|++++|+|+.+...- ........+....  ..++++++||+|+.+....
T Consensus       101 ~~~--~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~-~t~e~~~~~~~~~--~~~iivvvNK~D~~~~~~~  175 (632)
T PRK05506        101 TPK--RKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLT-QTRRHSFIASLLG--IRHVVLAVNKMDLVDYDQE  175 (632)
T ss_pred             cCC--ceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccc-cCHHHHHHHHHhC--CCeEEEEEEecccccchhH
Confidence            333  5788999999988766555567899999999999754321 1112222222221  2578889999998642211


Q ss_pred             CH----HHHHHHHHHcC---CCEEEEecCCCCCHHH
Q 028792          132 SY----ETAKAFADEIG---IPFMETSAKSATNVEQ  160 (203)
Q Consensus       132 ~~----~~~~~~~~~~~---~~~~~~Sa~~~~gi~~  160 (203)
                      ..    .++.++....+   ++++++||++|+|+++
T Consensus       176 ~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        176 VFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             HHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence            11    22333334444   4699999999999985

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.64  E-value=4.1e-15  Score=115.28  Aligned_cols=154  Identities=22%  Similarity=0.241  Sum_probs=102.3

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCC-------------------------------CCCCCccccceeeEEEEEEECC
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDS-------------------------------YLESYISTIGVDFKIRTVEQDG   54 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~   54 (203)
                      ...++++++|+..+|||||+-+|+.+.                               ...+.....+.+.....+..+.
T Consensus         5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k   84 (428)
T COG5256           5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK   84 (428)
T ss_pred             CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCC
Confidence            356899999999999999999987421                               1122233334444444444444


Q ss_pred             eEEEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChh---hHHHHHHHHHH-HHhhcCCCCcEEEEEeCCCCCCCcc
Q 028792           55 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQE---SFNNVKQWLNE-IDRYASENVNKLLVGNKCDLTANKV  130 (203)
Q Consensus        55 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~-l~~~~~~~~p~iiv~nK~D~~~~~~  130 (203)
                        +.++|+|+||+..|-.....-..++|+.|||+|+.+.+   .|...-+.++- +.....--..+|+++||+|..+..+
T Consensus        85 --~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wde  162 (428)
T COG5256          85 --YNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSWDE  162 (428)
T ss_pred             --ceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccccccCH
Confidence              67999999998888777777889999999999998763   22111121111 2222222356788899999988655


Q ss_pred             cCHHHHHH----HHHHcC-----CCEEEEecCCCCCHHHH
Q 028792          131 VSYETAKA----FADEIG-----IPFMETSAKSATNVEQA  161 (203)
Q Consensus       131 ~~~~~~~~----~~~~~~-----~~~~~~Sa~~~~gi~~~  161 (203)
                      ..++++..    +.+..+     ++++++|+..|.|+.+-
T Consensus       163 ~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~  202 (428)
T COG5256         163 ERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK  202 (428)
T ss_pred             HHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence            55554432    333333     67999999999998753

>PRK12739 elongation factor G; Reviewed

Probab=99.63  E-value=1.5e-14  Score=123.07  Aligned_cols=117  Identities=16%  Similarity=0.156  Sum_probs=83.0

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhcCC--C------C----------CCCccccceeeEEEEEEECCeEEEEEEEeCCC
Q 028792            5 YDYLFKLLLIGDSGVGKSCLLLRFADDS--Y------L----------ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG   66 (203)
Q Consensus         5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~--~------~----------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g   66 (203)
                      .++..+|+|+|.+++|||||+++|+...  .      .          .+..+.++.+.....+.+++  ..++++||||
T Consensus         5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG   82 (691)
T PRK12739          5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKG--HRINIIDTPG   82 (691)
T ss_pred             ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECC--EEEEEEcCCC
Confidence            4567899999999999999999997421  0      0          01123344445555566665  7889999999


Q ss_pred             hhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028792           67 QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTA  127 (203)
Q Consensus        67 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~  127 (203)
                      +..+...+...+..+|++++|+|+.+...... ...+..+   ...+.|.++++||+|+..
T Consensus        83 ~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt-~~i~~~~---~~~~~p~iv~iNK~D~~~  139 (691)
T PRK12739         83 HVDFTIEVERSLRVLDGAVAVFDAVSGVEPQS-ETVWRQA---DKYGVPRIVFVNKMDRIG  139 (691)
T ss_pred             HHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHH-HHHHHHH---HHcCCCEEEEEECCCCCC
Confidence            98877778888899999999999986533211 2222222   234689999999999864

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.63  E-value=6e-15  Score=119.10  Aligned_cols=161  Identities=13%  Similarity=0.172  Sum_probs=101.2

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCC---CCCCccccc--eeeEEEE------------E-EECC--------------
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFADDSY---LESYISTIG--VDFKIRT------------V-EQDG--------------   54 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~~~~---~~~~~~~~~--~~~~~~~------------~-~~~~--------------   54 (203)
                      -.++|.++|.-..|||||+.+|.+...   +.+.....+  ..+....            + ....              
T Consensus        33 ~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (460)
T PTZ00327         33 ATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGHK  112 (460)
T ss_pred             CcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccccc
Confidence            458899999999999999999986332   222211111  1111110            0 0000              


Q ss_pred             --eEEEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc-
Q 028792           55 --KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVV-  131 (203)
Q Consensus        55 --~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~-  131 (203)
                        ....+.++|+||+..|.......+..+|++++|+|+.+........+.+..+....  -.++++++||+|+.+.... 
T Consensus       113 ~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lg--i~~iIVvlNKiDlv~~~~~~  190 (460)
T PTZ00327        113 MTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMK--LKHIIILQNKIDLVKEAQAQ  190 (460)
T ss_pred             ccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcC--CCcEEEEEecccccCHHHHH
Confidence              01368899999999887777777789999999999986311111222222222221  2468899999998753221 


Q ss_pred             -CHHHHHHHHHH---cCCCEEEEecCCCCCHHHHHHHHHHHH
Q 028792          132 -SYETAKAFADE---IGIPFMETSAKSATNVEQAFMAMAASI  169 (203)
Q Consensus       132 -~~~~~~~~~~~---~~~~~~~~Sa~~~~gi~~~~~~l~~~~  169 (203)
                       ..+++.++...   ...+++++||++|+|++.+++.|.+.+
T Consensus       191 ~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~l  232 (460)
T PTZ00327        191 DQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQI  232 (460)
T ss_pred             HHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhC
Confidence             12233333332   357899999999999999998887644

>TIGR00503 prfC peptide chain release factor 3

Probab=99.63  E-value=1.3e-14  Score=119.24  Aligned_cols=118  Identities=14%  Similarity=0.160  Sum_probs=78.6

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhc--CCCCC--C----------------CccccceeeEEEEEEECCeEEEEEEEeC
Q 028792            5 YDYLFKLLLIGDSGVGKSCLLLRFAD--DSYLE--S----------------YISTIGVDFKIRTVEQDGKTIKLQIWDT   64 (203)
Q Consensus         5 ~~~~~~i~i~G~~~~GKSsli~~l~~--~~~~~--~----------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~   64 (203)
                      ..+..+|+|+|.+++|||||+++|+.  +....  .                .....+.++......++.....+++|||
T Consensus         8 ~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDT   87 (527)
T TIGR00503         8 VDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDT   87 (527)
T ss_pred             hccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEEC
Confidence            35667999999999999999999863  11100  0                0001122233333333334488999999


Q ss_pred             CChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 028792           65 AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLT  126 (203)
Q Consensus        65 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~  126 (203)
                      ||+..+.......+..+|++|+|+|+++.-. .....++.....   .+.|+++++||+|+.
T Consensus        88 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~---~~~PiivviNKiD~~  145 (527)
T TIGR00503        88 PGHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVTRL---RDTPIFTFMNKLDRD  145 (527)
T ss_pred             CChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHHh---cCCCEEEEEECcccc
Confidence            9998887766777899999999999986421 122333333322   368999999999985

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.63  E-value=3.2e-14  Score=113.52  Aligned_cols=156  Identities=20%  Similarity=0.167  Sum_probs=118.7

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEE
Q 028792            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI   84 (203)
Q Consensus         5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (203)
                      .++..-|.|||.-.-|||||+..|-.........-.++..+....+..+.+ -.+++.||||+..|..++..-..-.|++
T Consensus       150 ~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G-~~iTFLDTPGHaAF~aMRaRGA~vtDIv  228 (683)
T KOG1145|consen  150 EPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSG-KSITFLDTPGHAAFSAMRARGANVTDIV  228 (683)
T ss_pred             CCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCC-CEEEEecCCcHHHHHHHHhccCccccEE
Confidence            346778999999999999999999877766554455555555555555533 6799999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHH-------HHcC--CCEEEEecCCC
Q 028792           85 IVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFA-------DEIG--IPFMETSAKSA  155 (203)
Q Consensus        85 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~-------~~~~--~~~~~~Sa~~~  155 (203)
                      ++|+.+.|.-.    .+..+.|.+....+.|+++.+||+|.++..   .+.+.+..       +.+|  ++++++||++|
T Consensus       229 VLVVAadDGVm----pQT~EaIkhAk~A~VpiVvAinKiDkp~a~---pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g  301 (683)
T KOG1145|consen  229 VLVVAADDGVM----PQTLEAIKHAKSANVPIVVAINKIDKPGAN---PEKVKRELLSQGIVVEDLGGDVQVIPISALTG  301 (683)
T ss_pred             EEEEEccCCcc----HhHHHHHHHHHhcCCCEEEEEeccCCCCCC---HHHHHHHHHHcCccHHHcCCceeEEEeecccC
Confidence            99999988432    344555666666789999999999987542   23332222       2333  57999999999


Q ss_pred             CCHHHHHHHHHHH
Q 028792          156 TNVEQAFMAMAAS  168 (203)
Q Consensus       156 ~gi~~~~~~l~~~  168 (203)
                      +|++.+-+.+.-.
T Consensus       302 ~nl~~L~eaill~  314 (683)
T KOG1145|consen  302 ENLDLLEEAILLL  314 (683)
T ss_pred             CChHHHHHHHHHH
Confidence            9999998887653

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.62  E-value=1.5e-14  Score=102.60  Aligned_cols=154  Identities=20%  Similarity=0.233  Sum_probs=101.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhcccc---CCcEEE
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYR---GAHGII   85 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~---~~d~~i   85 (203)
                      -.|+++|+.+||||+|+.+|..+.....+   +..+.....+..+.  -.++++|.||+.+.+.....++.   .+-++|
T Consensus        39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~Tv---tSiepn~a~~r~gs--~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiV  113 (238)
T KOG0090|consen   39 NAVLLVGLSDSGKTSLFTQLITGSHRGTV---TSIEPNEATYRLGS--ENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIV  113 (238)
T ss_pred             CcEEEEecCCCCceeeeeehhcCCccCee---eeeccceeeEeecC--cceEEEeCCCcHHHHHHHHHHccccccceeEE
Confidence            46999999999999999999987543332   22233334444444  33789999999998877666665   789999


Q ss_pred             EEEeCCC--hhhHHHHHHHHHHHHhh--cCCCCcEEEEEeCCCCCCCccc------CHHHH-------------------
Q 028792           86 VVYDVTD--QESFNNVKQWLNEIDRY--ASENVNKLLVGNKCDLTANKVV------SYETA-------------------  136 (203)
Q Consensus        86 ~v~d~~~--~~s~~~~~~~~~~l~~~--~~~~~p~iiv~nK~D~~~~~~~------~~~~~-------------------  136 (203)
                      ||+|..-  ++--+-...++..+...  .....|++|..||.|+......      .+.++                   
T Consensus       114 FVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~  193 (238)
T KOG0090|consen  114 FVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIA  193 (238)
T ss_pred             EEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhcccccccc
Confidence            9999762  32222233455555444  3457889999999998644210      00000                   


Q ss_pred             ---------H--HHHHH--cCCCEEEEecCCCCCHHHHHHHHHHH
Q 028792          137 ---------K--AFADE--IGIPFMETSAKSATNVEQAFMAMAAS  168 (203)
Q Consensus       137 ---------~--~~~~~--~~~~~~~~Sa~~~~gi~~~~~~l~~~  168 (203)
                               .  +|.+.  ..+.+.++|++++ +++++-+||.+.
T Consensus       194 ~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~  237 (238)
T KOG0090|consen  194 KDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA  237 (238)
T ss_pred             ccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence                     0  11111  2356888999988 899999998764

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=99.61  E-value=1.3e-14  Score=115.61  Aligned_cols=161  Identities=20%  Similarity=0.207  Sum_probs=113.6

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhcCCC--CC-------------CCccccceeeEEEEE-EECCeEEEEEEEeCCChh
Q 028792            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSY--LE-------------SYISTIGVDFKIRTV-EQDGKTIKLQIWDTAGQE   68 (203)
Q Consensus         5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~--~~-------------~~~~~~~~~~~~~~~-~~~~~~~~~~i~D~~g~~   68 (203)
                      .++.-++.|+..-.-|||||..+|+...-  +.             +....++.......+ ..++..+.++++||||+.
T Consensus        57 ~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHv  136 (650)
T KOG0462|consen   57 VENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHV  136 (650)
T ss_pred             hhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcc
Confidence            35667899999999999999999973211  11             122233322222222 223666889999999999


Q ss_pred             hhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc-CHHHHHHHHHHcCCCE
Q 028792           69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVV-SYETAKAFADEIGIPF  147 (203)
Q Consensus        69 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~  147 (203)
                      .|......-+..+|++++|+|++..---.....++..+    +.+..+|.|+||+|+...+.- -..++.+.+.....++
T Consensus       137 DFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAf----e~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~~  212 (650)
T KOG0462|consen  137 DFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAF----EAGLAIIPVLNKIDLPSADPERVENQLFELFDIPPAEV  212 (650)
T ss_pred             cccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHH----HcCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccce
Confidence            99999999999999999999998644322233333222    336788999999999765432 1233444555556789


Q ss_pred             EEEecCCCCCHHHHHHHHHHHH
Q 028792          148 METSAKSATNVEQAFMAMAASI  169 (203)
Q Consensus       148 ~~~Sa~~~~gi~~~~~~l~~~~  169 (203)
                      +.+||++|.|++++++.+++.+
T Consensus       213 i~vSAK~G~~v~~lL~AII~rV  234 (650)
T KOG0462|consen  213 IYVSAKTGLNVEELLEAIIRRV  234 (650)
T ss_pred             EEEEeccCccHHHHHHHHHhhC
Confidence            9999999999999999999876

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.60  E-value=5.4e-14  Score=111.88  Aligned_cols=83  Identities=22%  Similarity=0.262  Sum_probs=55.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEE---------------------EC-CeEEEEEEEeCCC
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVE---------------------QD-GKTIKLQIWDTAG   66 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~---------------------~~-~~~~~~~i~D~~g   66 (203)
                      ++|+++|.|++|||||+++|.+........+..+.+.....+.                     .+ .....+.+||+||
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG   81 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG   81 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence            6899999999999999999998766443233333223322211                     11 1236789999999


Q ss_pred             hh----hhchhhhcc---ccCCcEEEEEEeCC
Q 028792           67 QE----RFRTITSSY---YRGAHGIIVVYDVT   91 (203)
Q Consensus        67 ~~----~~~~~~~~~---~~~~d~~i~v~d~~   91 (203)
                      ..    ....+...+   ++++|++++|+|+.
T Consensus        82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~  113 (396)
T PRK09602         82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS  113 (396)
T ss_pred             cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence            42    223333344   78999999999997

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.59  E-value=3.9e-14  Score=120.62  Aligned_cols=118  Identities=18%  Similarity=0.121  Sum_probs=83.2

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhcCCCCC------------------CCccccceeeEEEEEEECCeEEEEEEEeCCC
Q 028792            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLE------------------SYISTIGVDFKIRTVEQDGKTIKLQIWDTAG   66 (203)
Q Consensus         5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g   66 (203)
                      .+..-+|+|+|.+++|||||+++|+...-..                  +....++.......+.+++  ..+++|||||
T Consensus         7 ~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~--~~i~liDTPG   84 (689)
T TIGR00484         7 LNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKG--HRINIIDTPG   84 (689)
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECC--eEEEEEECCC
Confidence            3456799999999999999999997321110                  0112334444455566665  7899999999


Q ss_pred             hhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 028792           67 QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN  128 (203)
Q Consensus        67 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~  128 (203)
                      +..+.......+..+|++++|+|+.+....... .++..+.   ..+.|+++++||+|+...
T Consensus        85 ~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~---~~~~p~ivviNK~D~~~~  142 (689)
T TIGR00484        85 HVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSE-TVWRQAN---RYEVPRIAFVNKMDKTGA  142 (689)
T ss_pred             CcchhHHHHHHHHHhCEEEEEEeCCCCCChhHH-HHHHHHH---HcCCCEEEEEECCCCCCC
Confidence            988777788889999999999999875443322 2222222   236899999999998753

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>PRK09866 hypothetical protein; Provisional

Probab=99.59  E-value=1.3e-13  Score=113.00  Aligned_cols=108  Identities=17%  Similarity=0.186  Sum_probs=72.0

Q ss_pred             EEEEEeCCChhh-----hchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccC
Q 028792           58 KLQIWDTAGQER-----FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVS  132 (203)
Q Consensus        58 ~~~i~D~~g~~~-----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~  132 (203)
                      .+.++||||...     ........+..+|+++||+|+....+..+ ....+.+.... ...|+++|+||+|+.+.....
T Consensus       231 QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~~-K~~PVILVVNKIDl~dreedd  308 (741)
T PRK09866        231 QLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAVG-QSVPLYVLVNKFDQQDRNSDD  308 (741)
T ss_pred             CEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhcC-CCCCEEEEEEcccCCCcccch
Confidence            468999999643     12233446899999999999986433222 22333343321 125999999999986433333


Q ss_pred             HHHHHHHHH----HcC---CCEEEEecCCCCCHHHHHHHHHH
Q 028792          133 YETAKAFAD----EIG---IPFMETSAKSATNVEQAFMAMAA  167 (203)
Q Consensus       133 ~~~~~~~~~----~~~---~~~~~~Sa~~~~gi~~~~~~l~~  167 (203)
                      .+.+..+..    ...   ..++++||+.|.|++++++.|..
T Consensus       309 kE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~  350 (741)
T PRK09866        309 ADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN  350 (741)
T ss_pred             HHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence            445555432    222   36999999999999999999876

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=99.58  E-value=1.6e-14  Score=114.19  Aligned_cols=171  Identities=15%  Similarity=0.112  Sum_probs=119.8

Q ss_pred             CCCCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhh-----ch----
Q 028792            2 NNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF-----RT----   72 (203)
Q Consensus         2 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-----~~----   72 (203)
                      +.-++..-.++++|.|++|||||++.+........+.++++.......+.+  ...+++++||||.-..     ..    
T Consensus       162 PsIDp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dy--kYlrwQViDTPGILD~plEdrN~IEmq  239 (620)
T KOG1490|consen  162 PAIDPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDY--KYLRWQVIDTPGILDRPEEDRNIIEMQ  239 (620)
T ss_pred             CCCCCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhh--heeeeeecCCccccCcchhhhhHHHHH
Confidence            344666778999999999999999999876665555555554444444433  3377889999994321     00    


Q ss_pred             hhhccccCCcEEEEEEeCCChh--hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHH--H-HHHHHHcCCCE
Q 028792           73 ITSSYYRGAHGIIVVYDVTDQE--SFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYET--A-KAFADEIGIPF  147 (203)
Q Consensus        73 ~~~~~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~--~-~~~~~~~~~~~  147 (203)
                      ....+..--.+|+|+.|++...  |+.+-..++..|..... ++|+|+|+||+|......++.+.  + ..+...-++++
T Consensus       240 sITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFa-NK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v  318 (620)
T KOG1490|consen  240 IITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFA-NKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKV  318 (620)
T ss_pred             HHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhc-CCceEEEeecccccCccccCHHHHHHHHHHHhccCceE
Confidence            0122223356899999999755  55555557777765544 68999999999998776665443  2 33333445899


Q ss_pred             EEEecCCCCCHHHHHHHHHHHHHHHhcc
Q 028792          148 METSAKSATNVEQAFMAMAASIKNRMAS  175 (203)
Q Consensus       148 ~~~Sa~~~~gi~~~~~~l~~~~~~~~~~  175 (203)
                      +.+|..+.+|+.++....++.++.++-.
T Consensus       319 ~~tS~~~eegVm~Vrt~ACe~LLa~RVE  346 (620)
T KOG1490|consen  319 VQTSCVQEEGVMDVRTTACEALLAARVE  346 (620)
T ss_pred             EEecccchhceeeHHHHHHHHHHHHHHH
Confidence            9999999999999999988888765544

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=99.56  E-value=3.1e-14  Score=92.60  Aligned_cols=136  Identities=26%  Similarity=0.282  Sum_probs=95.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCh----hhhchhhhccccCCcEEE
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ----ERFRTITSSYYRGAHGII   85 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~----~~~~~~~~~~~~~~d~~i   85 (203)
                      |++++|..|+|||||.+.|.+.....  ..|...+       ++..    -.+|+||.    .++.+.......++|+++
T Consensus         3 ri~~vG~~gcGKTtL~q~L~G~~~ly--kKTQAve-------~~d~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~   69 (148)
T COG4917           3 RIAFVGQVGCGKTTLFQSLYGNDTLY--KKTQAVE-------FNDK----GDIDTPGEYFEHPRWYHALITTLQDADVII   69 (148)
T ss_pred             eeEEecccccCchhHHHHhhcchhhh--cccceee-------ccCc----cccCCchhhhhhhHHHHHHHHHhhccceee
Confidence            78999999999999999999865322  2232222       2111    15799993    233333444568899999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-CEEEEecCCCCCHHHHHHH
Q 028792           86 VVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGI-PFMETSAKSATNVEQAFMA  164 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~~~~  164 (203)
                      +|-+++++++--     -..+....  ..|+|-|++|.|+.+.  .+.+..++|...-|. ++|++|+.++.|++++++.
T Consensus        70 ~v~~and~~s~f-----~p~f~~~~--~k~vIgvVTK~DLaed--~dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~  140 (148)
T COG4917          70 YVHAANDPESRF-----PPGFLDIG--VKKVIGVVTKADLAED--ADISLVKRWLREAGAEPIFETSAVDNQGVEELVDY  140 (148)
T ss_pred             eeecccCccccC-----Cccccccc--ccceEEEEecccccch--HhHHHHHHHHHHcCCcceEEEeccCcccHHHHHHH
Confidence            999999987511     11111211  4679999999999863  334566777777786 7999999999999999998


Q ss_pred             HHH
Q 028792          165 MAA  167 (203)
Q Consensus       165 l~~  167 (203)
                      |..
T Consensus       141 L~~  143 (148)
T COG4917         141 LAS  143 (148)
T ss_pred             HHh
Confidence            864

>PRK12740 elongation factor G; Reviewed

Probab=99.54  E-value=1.8e-13  Score=116.56  Aligned_cols=108  Identities=22%  Similarity=0.264  Sum_probs=75.5

Q ss_pred             EcCCCCcHHHHHHHHhcCCCC--------C----------CCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhh
Q 028792           14 IGDSGVGKSCLLLRFADDSYL--------E----------SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITS   75 (203)
Q Consensus        14 ~G~~~~GKSsli~~l~~~~~~--------~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~   75 (203)
                      +|++++|||||+++|+...-.        .          ...+..+.......+.+++  +.+++||+||+..+...+.
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~   78 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKG--HKINLIDTPGHVDFTGEVE   78 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECC--EEEEEEECCCcHHHHHHHH
Confidence            699999999999999632111        0          0112333344445555655  7899999999988777778


Q ss_pred             ccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028792           76 SYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTA  127 (203)
Q Consensus        76 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~  127 (203)
                      ..+..+|++++|+|+++.........| ..+.   ..+.|+++++||+|...
T Consensus        79 ~~l~~aD~vllvvd~~~~~~~~~~~~~-~~~~---~~~~p~iiv~NK~D~~~  126 (668)
T PRK12740         79 RALRVLDGAVVVVCAVGGVEPQTETVW-RQAE---KYGVPRIIFVNKMDRAG  126 (668)
T ss_pred             HHHHHhCeEEEEEeCCCCcCHHHHHHH-HHHH---HcCCCEEEEEECCCCCC
Confidence            888999999999999876554333222 2222   23689999999999864

>PRK00007 elongation factor G; Reviewed

Probab=99.54  E-value=1.9e-13  Score=116.40  Aligned_cols=143  Identities=17%  Similarity=0.176  Sum_probs=91.9

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhc--CCCCC----------------CCccccceeeEEEEEEECCeEEEEEEEeCCC
Q 028792            5 YDYLFKLLLIGDSGVGKSCLLLRFAD--DSYLE----------------SYISTIGVDFKIRTVEQDGKTIKLQIWDTAG   66 (203)
Q Consensus         5 ~~~~~~i~i~G~~~~GKSsli~~l~~--~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g   66 (203)
                      .++..+|+|+|.+++|||||+++|+.  +....                +..+..+.+.....+.+.+  ..++++||||
T Consensus         7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~--~~~~liDTPG   84 (693)
T PRK00007          7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKD--HRINIIDTPG   84 (693)
T ss_pred             ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECC--eEEEEEeCCC
Confidence            45678999999999999999999973  11100                0123344444445555655  6889999999


Q ss_pred             hhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-
Q 028792           67 QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGI-  145 (203)
Q Consensus        67 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-  145 (203)
                      +..+.......+..+|++++|+|+...-.... ...+..+.   ..+.|.++++||+|+....  ......++....+. 
T Consensus        85 ~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt-~~~~~~~~---~~~~p~iv~vNK~D~~~~~--~~~~~~~i~~~l~~~  158 (693)
T PRK00007         85 HVDFTIEVERSLRVLDGAVAVFDAVGGVEPQS-ETVWRQAD---KYKVPRIAFVNKMDRTGAD--FYRVVEQIKDRLGAN  158 (693)
T ss_pred             cHHHHHHHHHHHHHcCEEEEEEECCCCcchhh-HHHHHHHH---HcCCCEEEEEECCCCCCCC--HHHHHHHHHHHhCCC
Confidence            88776667777889999999999876433222 22222232   2368999999999987543  12223333333332 


Q ss_pred             ---CEEEEecCCC
Q 028792          146 ---PFMETSAKSA  155 (203)
Q Consensus       146 ---~~~~~Sa~~~  155 (203)
                         ..+++|+..+
T Consensus       159 ~~~~~ipisa~~~  171 (693)
T PRK00007        159 PVPIQLPIGAEDD  171 (693)
T ss_pred             eeeEEecCccCCc
Confidence               3456666554

>PTZ00258 GTP-binding protein; Provisional

Probab=99.52  E-value=4.2e-13  Score=105.89  Aligned_cols=86  Identities=21%  Similarity=0.202  Sum_probs=60.4

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCe---------------EEEEEEEeCCChhh-
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGK---------------TIKLQIWDTAGQER-   69 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~-   69 (203)
                      ...++|.++|.||+|||||+|+|.+........|.++.+.....+.+.+.               ..++.++|+||... 
T Consensus        19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g   98 (390)
T PTZ00258         19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG   98 (390)
T ss_pred             CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence            45689999999999999999999877655444455555555555554432               23589999999432 


Q ss_pred             ------hchhhhccccCCcEEEEEEeCC
Q 028792           70 ------FRTITSSYYRGAHGIIVVYDVT   91 (203)
Q Consensus        70 ------~~~~~~~~~~~~d~~i~v~d~~   91 (203)
                            ........++.+|++++|+|+.
T Consensus        99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f  126 (390)
T PTZ00258         99 ASEGEGLGNAFLSHIRAVDGIYHVVRAF  126 (390)
T ss_pred             CcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence                  1112233467899999999974

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.52  E-value=8.4e-13  Score=100.63  Aligned_cols=129  Identities=17%  Similarity=0.212  Sum_probs=74.7

Q ss_pred             CCCCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-ccccceeeEEEEEEECCeEEEEEEEeCCChhhhchh-------
Q 028792            2 NNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESY-ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI-------   73 (203)
Q Consensus         2 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-------   73 (203)
                      ++.+...++|+++|.+|+||||++|+|++....... ..+.+..........++  ..+.++||||.......       
T Consensus        32 ~~~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G--~~l~VIDTPGL~d~~~~~e~~~~~  109 (313)
T TIGR00991        32 KEEDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAG--FTLNIIDTPGLIEGGYINDQAVNI  109 (313)
T ss_pred             ccccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEECCCCCchHHHHHHHHHH
Confidence            445667899999999999999999999987653221 11122222222233444  68899999995532111       


Q ss_pred             hhccc--cCCcEEEEEEeCCChhhHHHH-HHHHHHHHhhcC--CCCcEEEEEeCCCCCCCcccCH
Q 028792           74 TSSYY--RGAHGIIVVYDVTDQESFNNV-KQWLNEIDRYAS--ENVNKLLVGNKCDLTANKVVSY  133 (203)
Q Consensus        74 ~~~~~--~~~d~~i~v~d~~~~~s~~~~-~~~~~~l~~~~~--~~~p~iiv~nK~D~~~~~~~~~  133 (203)
                      ...++  ...|+++||..++.. .+... ...+..+.....  --.++++++|+.|.......+.
T Consensus       110 ik~~l~~~g~DvVLyV~rLD~~-R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd~~~~  173 (313)
T TIGR00991       110 IKRFLLGKTIDVLLYVDRLDAY-RVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPDGLEY  173 (313)
T ss_pred             HHHHhhcCCCCEEEEEeccCcc-cCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCCCCCH
Confidence            11111  268999999665421 11111 222333322211  1257899999999765443443

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.51  E-value=2.6e-13  Score=106.90  Aligned_cols=159  Identities=23%  Similarity=0.256  Sum_probs=113.1

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCC---------------CCCCCccccceeeEEEEEEE---CCeEEEEEEEeCCCh
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDS---------------YLESYISTIGVDFKIRTVEQ---DGKTIKLQIWDTAGQ   67 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~---------------~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~g~   67 (203)
                      ...-+..|+..-.-|||||..+|+...               ..-+....++.......+.+   +|..+.++++||||+
T Consensus         7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGH   86 (603)
T COG0481           7 KNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH   86 (603)
T ss_pred             hhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCc
Confidence            345567888999999999999997421               12233344444444444333   457799999999999


Q ss_pred             hhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC--
Q 028792           68 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGI--  145 (203)
Q Consensus        68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~--  145 (203)
                      -.|.-...+-+..+.+.++|+|++..-.-..+.+.+..+.    .+.-++-|+||+|++..+.  ..-..+...-.++  
T Consensus        87 VDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle----~~LeIiPViNKIDLP~Adp--ervk~eIe~~iGid~  160 (603)
T COG0481          87 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NNLEIIPVLNKIDLPAADP--ERVKQEIEDIIGIDA  160 (603)
T ss_pred             cceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH----cCcEEEEeeecccCCCCCH--HHHHHHHHHHhCCCc
Confidence            9888777788899999999999987544444455444443    3567788999999986532  1222333444454  


Q ss_pred             -CEEEEecCCCCCHHHHHHHHHHHHH
Q 028792          146 -PFMETSAKSATNVEQAFMAMAASIK  170 (203)
Q Consensus       146 -~~~~~Sa~~~~gi~~~~~~l~~~~~  170 (203)
                       ..+.+||++|.|++++++.+++.+-
T Consensus       161 ~dav~~SAKtG~gI~~iLe~Iv~~iP  186 (603)
T COG0481         161 SDAVLVSAKTGIGIEDVLEAIVEKIP  186 (603)
T ss_pred             chheeEecccCCCHHHHHHHHHhhCC
Confidence             5899999999999999999998773

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.51  E-value=7.2e-13  Score=115.33  Aligned_cols=144  Identities=17%  Similarity=0.196  Sum_probs=96.7

Q ss_pred             cHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeE-----------E-----EEEEEeCCChhhhchhhhccccCCcE
Q 028792           20 GKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKT-----------I-----KLQIWDTAGQERFRTITSSYYRGAHG   83 (203)
Q Consensus        20 GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~-----~~~i~D~~g~~~~~~~~~~~~~~~d~   83 (203)
                      +||||+.+|-+......-...++.+.....+..+...           .     .+.+|||||++.+..+....+..+|+
T Consensus       473 ~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDi  552 (1049)
T PRK14845        473 HNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADL  552 (1049)
T ss_pred             ccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCE
Confidence            4999999999877765554555555555554443210           1     27899999999988877777888999


Q ss_pred             EEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccC------------HHH-HHHH--------
Q 028792           84 IIVVYDVTD---QESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVS------------YET-AKAF--------  139 (203)
Q Consensus        84 ~i~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~------------~~~-~~~~--------  139 (203)
                      +++|+|+++   ++++..+.    .+..   .+.|+++++||+|+.......            .+. ..++        
T Consensus       553 vlLVVDa~~Gi~~qT~e~I~----~lk~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~  625 (1049)
T PRK14845        553 AVLVVDINEGFKPQTIEAIN----ILRQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYELI  625 (1049)
T ss_pred             EEEEEECcccCCHhHHHHHH----HHHH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHHh
Confidence            999999986   44443332    2222   258999999999986432110            010 0011        


Q ss_pred             --HHH-------------c--CCCEEEEecCCCCCHHHHHHHHHHHHH
Q 028792          140 --ADE-------------I--GIPFMETSAKSATNVEQAFMAMAASIK  170 (203)
Q Consensus       140 --~~~-------------~--~~~~~~~Sa~~~~gi~~~~~~l~~~~~  170 (203)
                        ...             +  .++++++||++|+|+++++.+|.....
T Consensus       626 ~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~  673 (1049)
T PRK14845        626 GKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQ  673 (1049)
T ss_pred             hHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhH
Confidence              011             1  368999999999999999988875443

>cd00066 G-alpha G protein alpha subunit

Probab=99.51  E-value=8.8e-13  Score=102.53  Aligned_cols=118  Identities=23%  Similarity=0.247  Sum_probs=86.6

Q ss_pred             EEEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCCh----------hhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCC
Q 028792           56 TIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQ----------ESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCD  124 (203)
Q Consensus        56 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D  124 (203)
                      .+.+.+||++|+...+..|..++.++++++||+|+++.          ..+.+....+..+..... .+.|+++++||.|
T Consensus       160 ~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D  239 (317)
T cd00066         160 NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKD  239 (317)
T ss_pred             ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChH
Confidence            37789999999999999999999999999999999874          345555555555443322 5789999999999


Q ss_pred             CCCCc----------------ccCHHHHHHHHHH----------cCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 028792          125 LTANK----------------VVSYETAKAFADE----------IGIPFMETSAKSATNVEQAFMAMAASIKNRM  173 (203)
Q Consensus       125 ~~~~~----------------~~~~~~~~~~~~~----------~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~  173 (203)
                      +....                ..+.+.+..+...          ..+.+..++|.+..++..+|..+.+.+....
T Consensus       240 ~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~~  314 (317)
T cd00066         240 LFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQNN  314 (317)
T ss_pred             HHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHHH
Confidence            64321                2234444444322          1245677899999999999999999887654

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.49  E-value=1.1e-12  Score=98.42  Aligned_cols=123  Identities=19%  Similarity=0.255  Sum_probs=73.5

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-ccccceeeEEEEEEECCeEEEEEEEeCCChhhhc--h-h------
Q 028792            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESY-ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR--T-I------   73 (203)
Q Consensus         4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--~-~------   73 (203)
                      ..+..++|+++|.+|+|||||+|+|++....... ....+..........++  ..+.++||||.....  . .      
T Consensus        27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~~  104 (249)
T cd01853          27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKILS  104 (249)
T ss_pred             hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHHH
Confidence            4567799999999999999999999987653322 11222233333334455  678999999955331  1 0      


Q ss_pred             -hhccc--cCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhcCC--CCcEEEEEeCCCCCCCc
Q 028792           74 -TSSYY--RGAHGIIVVYDVTDQE-SFNNVKQWLNEIDRYASE--NVNKLLVGNKCDLTANK  129 (203)
Q Consensus        74 -~~~~~--~~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~--~~p~iiv~nK~D~~~~~  129 (203)
                       ...++  ...|+++||..++... ...+ ...++.+......  -.++++|.||+|...+.
T Consensus       105 ~I~~~l~~~~idvIL~V~rlD~~r~~~~d-~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~  165 (249)
T cd01853         105 SIKRYLKKKTPDVVLYVDRLDMYRRDYLD-LPLLRAITDSFGPSIWRNAIVVLTHAASSPPD  165 (249)
T ss_pred             HHHHHHhccCCCEEEEEEcCCCCCCCHHH-HHHHHHHHHHhChhhHhCEEEEEeCCccCCCC
Confidence             11223  2578888887665321 2221 2233333322211  25789999999986543

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=99.49  E-value=7.4e-13  Score=100.82  Aligned_cols=150  Identities=23%  Similarity=0.253  Sum_probs=104.2

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCC---------------------------------CCCccccceeeEEEEEEE
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYL---------------------------------ESYISTIGVDFKIRTVEQ   52 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~   52 (203)
                      ...++++-+|+-.-||||||-+|+.+...                                 .+....++.++....+.-
T Consensus         4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT   83 (431)
T COG2895           4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST   83 (431)
T ss_pred             ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence            35799999999999999999999864321                                 112223455555555554


Q ss_pred             CCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccC
Q 028792           53 DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVS  132 (203)
Q Consensus        53 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~  132 (203)
                      +.  .+|.+.||||+++|....-.-...+|+.|+++|+..  .+.+-..-...+..... -..+++.+||+|+.+..+..
T Consensus        84 ~K--RkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~--Gvl~QTrRHs~I~sLLG-IrhvvvAVNKmDLvdy~e~~  158 (431)
T COG2895          84 EK--RKFIIADTPGHEQYTRNMATGASTADLAILLVDARK--GVLEQTRRHSFIASLLG-IRHVVVAVNKMDLVDYSEEV  158 (431)
T ss_pred             cc--ceEEEecCCcHHHHhhhhhcccccccEEEEEEecch--hhHHHhHHHHHHHHHhC-CcEEEEEEeeecccccCHHH
Confidence            44  678999999999999888888889999999999943  21111111112222222 25677888999999876555


Q ss_pred             HHHH----HHHHHHcCC---CEEEEecCCCCCHHH
Q 028792          133 YETA----KAFADEIGI---PFMETSAKSATNVEQ  160 (203)
Q Consensus       133 ~~~~----~~~~~~~~~---~~~~~Sa~~~~gi~~  160 (203)
                      ++.+    ..|+.++++   .++++||..|+|+..
T Consensus       159 F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~  193 (431)
T COG2895         159 FEAIVADYLAFAAQLGLKDVRFIPISALLGDNVVS  193 (431)
T ss_pred             HHHHHHHHHHHHHHcCCCcceEEechhccCCcccc
Confidence            5443    456777774   699999999999864

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=99.48  E-value=2.6e-12  Score=94.54  Aligned_cols=161  Identities=18%  Similarity=0.209  Sum_probs=93.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCc--cccceeeEEEEEEECCeEEEEEEEeCCChhhh-------chhh----h
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDSYLESYI--STIGVDFKIRTVEQDGKTIKLQIWDTAGQERF-------RTIT----S   75 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~----~   75 (203)
                      ++|+++|.+|+||||++|.+++........  ...+..........++  ..+.++||||....       ....    .
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~   78 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS   78 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence            589999999999999999999877654432  2333444455556777  67889999993221       1111    1


Q ss_pred             ccccCCcEEEEEEeCCChhhHHH--HHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccC-------HHHHHHHHHHcCCC
Q 028792           76 SYYRGAHGIIVVYDVTDQESFNN--VKQWLNEIDRYASENVNKLLVGNKCDLTANKVVS-------YETAKAFADEIGIP  146 (203)
Q Consensus        76 ~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~-------~~~~~~~~~~~~~~  146 (203)
                      ......++++||+.+.. -+-.+  +..++..+.... --..++||++..|......+.       ...+.++.+..+-.
T Consensus        79 ~~~~g~ha~llVi~~~r-~t~~~~~~l~~l~~~FG~~-~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R  156 (212)
T PF04548_consen   79 LCSPGPHAFLLVIPLGR-FTEEDREVLELLQEIFGEE-IWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGR  156 (212)
T ss_dssp             HTTT-ESEEEEEEETTB--SHHHHHHHHHHHHHHCGG-GGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             hccCCCeEEEEEEecCc-chHHHHHHHHHHHHHccHH-HHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCE
Confidence            22467899999999873 22111  122222222111 124578888888765543311       12345566667778


Q ss_pred             EEEEecC------CCCCHHHHHHHHHHHHHHHh
Q 028792          147 FMETSAK------SATNVEQAFMAMAASIKNRM  173 (203)
Q Consensus       147 ~~~~Sa~------~~~gi~~~~~~l~~~~~~~~  173 (203)
                      |...+.+      ....+.+++..+-+.+.+..
T Consensus       157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~  189 (212)
T PF04548_consen  157 YHVFNNKTKDKEKDESQVSELLEKIEEMVQENG  189 (212)
T ss_dssp             EEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             EEEEeccccchhhhHHHHHHHHHHHHHHHHHcC
Confidence            8887776      34567777777777666544

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.48  E-value=1.7e-13  Score=117.13  Aligned_cols=119  Identities=20%  Similarity=0.182  Sum_probs=80.3

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhcC---------------CCCCC---CccccceeeEEEEEEECCeEEEEEEEeCCC
Q 028792            5 YDYLFKLLLIGDSGVGKSCLLLRFADD---------------SYLES---YISTIGVDFKIRTVEQDGKTIKLQIWDTAG   66 (203)
Q Consensus         5 ~~~~~~i~i~G~~~~GKSsli~~l~~~---------------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g   66 (203)
                      .+...+|+++|+.++|||||+++|+..               .+.+.   +..|+...........++..+.+++|||||
T Consensus        16 ~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG   95 (720)
T TIGR00490        16 PKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPG   95 (720)
T ss_pred             cccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCC
Confidence            456789999999999999999999742               11110   112222222223333455668999999999


Q ss_pred             hhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028792           67 QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTA  127 (203)
Q Consensus        67 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~  127 (203)
                      +..+.......+..+|++++|+|+.+.-.......| ..+   ...+.|.++++||+|...
T Consensus        96 ~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~-~~~---~~~~~p~ivviNKiD~~~  152 (720)
T TIGR00490        96 HVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVL-RQA---LKENVKPVLFINKVDRLI  152 (720)
T ss_pred             ccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHH-HHH---HHcCCCEEEEEEChhccc
Confidence            988877778889999999999999764322111112 112   223578899999999864

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>smart00275 G_alpha G protein alpha subunit

Probab=99.47  E-value=2.1e-12  Score=101.27  Aligned_cols=123  Identities=21%  Similarity=0.231  Sum_probs=87.7

Q ss_pred             EEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCCh----------hhHHHHHHHHHHHHhhc-CCCCcEE
Q 028792           49 TVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQ----------ESFNNVKQWLNEIDRYA-SENVNKL  117 (203)
Q Consensus        49 ~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~l~~~~-~~~~p~i  117 (203)
                      .+.+++  +.+.+||.+|+...+..|..++.+++++|||+|+++-          ..+.+....+..+.... -.+.|++
T Consensus       178 ~f~~~~--~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~pii  255 (342)
T smart00275      178 AFIVKK--LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSII  255 (342)
T ss_pred             EEEECC--eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEE
Confidence            344444  6689999999999999999999999999999999963          34555555555554432 2578999


Q ss_pred             EEEeCCCCCCCc---------------ccCHHHHHHHHHH-----c------CCCEEEEecCCCCCHHHHHHHHHHHHHH
Q 028792          118 LVGNKCDLTANK---------------VVSYETAKAFADE-----I------GIPFMETSAKSATNVEQAFMAMAASIKN  171 (203)
Q Consensus       118 iv~nK~D~~~~~---------------~~~~~~~~~~~~~-----~------~~~~~~~Sa~~~~gi~~~~~~l~~~~~~  171 (203)
                      +++||.|+....               ..+.+.+..|...     .      .+.+..++|.+-.++..+|..+.+.+.+
T Consensus       256 l~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~  335 (342)
T smart00275      256 LFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQ  335 (342)
T ss_pred             EEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHH
Confidence            999999975321               1233344333222     1      1445778899999999999999888876


Q ss_pred             Hh
Q 028792          172 RM  173 (203)
Q Consensus       172 ~~  173 (203)
                      ..
T Consensus       336 ~~  337 (342)
T smart00275      336 RN  337 (342)
T ss_pred             HH
Confidence            54

Subunit of G proteins that contains the guanine nucleotide binding site

>TIGR00101 ureG urease accessory protein UreG

Probab=99.47  E-value=4e-13  Score=97.69  Aligned_cols=101  Identities=20%  Similarity=0.154  Sum_probs=62.9

Q ss_pred             EEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHH
Q 028792           58 KLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAK  137 (203)
Q Consensus        58 ~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~  137 (203)
                      ...++++.|..-......   .-+|.+|.|+|+.+.++...  .....+      ...-++++||+|+.+......+...
T Consensus        93 D~iiIEt~G~~l~~~~~~---~l~~~~i~vvD~~~~~~~~~--~~~~qi------~~ad~~~~~k~d~~~~~~~~~~~~~  161 (199)
T TIGR00101        93 EMVFIESGGDNLSATFSP---ELADLTIFVIDVAAGDKIPR--KGGPGI------TRSDLLVINKIDLAPMVGADLGVME  161 (199)
T ss_pred             CEEEEECCCCCcccccch---hhhCcEEEEEEcchhhhhhh--hhHhHh------hhccEEEEEhhhccccccccHHHHH
Confidence            455677777321111111   12678999999987555221  111112      1122889999999753233344444


Q ss_pred             HHHHH--cCCCEEEEecCCCCCHHHHHHHHHHHH
Q 028792          138 AFADE--IGIPFMETSAKSATNVEQAFMAMAASI  169 (203)
Q Consensus       138 ~~~~~--~~~~~~~~Sa~~~~gi~~~~~~l~~~~  169 (203)
                      +..+.  .+++++++||++|+|++++|++|.+.+
T Consensus       162 ~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~  195 (199)
T TIGR00101       162 RDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYA  195 (199)
T ss_pred             HHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            44444  347999999999999999999998754

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>PRK13768 GTPase; Provisional

Probab=99.46  E-value=1.1e-12  Score=98.91  Aligned_cols=112  Identities=17%  Similarity=0.216  Sum_probs=69.2

Q ss_pred             EEEEEeCCChhhh---chhhhccc---cC--CcEEEEEEeCCChhhHHHHHH-HHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 028792           58 KLQIWDTAGQERF---RTITSSYY---RG--AHGIIVVYDVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDLTAN  128 (203)
Q Consensus        58 ~~~i~D~~g~~~~---~~~~~~~~---~~--~d~~i~v~d~~~~~s~~~~~~-~~~~l~~~~~~~~p~iiv~nK~D~~~~  128 (203)
                      .+.+||+||..+.   ...+..++   ..  .+++++++|+........... ++..+......+.|+++|+||+|+...
T Consensus        98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~  177 (253)
T PRK13768         98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSE  177 (253)
T ss_pred             CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCc
Confidence            5789999997653   23332222   22  899999999975443322222 211111111236899999999998765


Q ss_pred             cccCH--HHH------------------------HHHHHHcC--CCEEEEecCCCCCHHHHHHHHHHHH
Q 028792          129 KVVSY--ETA------------------------KAFADEIG--IPFMETSAKSATNVEQAFMAMAASI  169 (203)
Q Consensus       129 ~~~~~--~~~------------------------~~~~~~~~--~~~~~~Sa~~~~gi~~~~~~l~~~~  169 (203)
                      .+...  ...                        .+..+..+  .+++++|+++++|+++++++|.+.+
T Consensus       178 ~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l  246 (253)
T PRK13768        178 EELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVF  246 (253)
T ss_pred             hhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHc
Confidence            32210  000                        01122333  5789999999999999999998765

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=99.45  E-value=1.7e-12  Score=95.19  Aligned_cols=152  Identities=19%  Similarity=0.238  Sum_probs=84.4

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCC------------CCCccccceeeEEEEEEEC-C------------------
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYL------------ESYISTIGVDFKIRTVEQD-G------------------   54 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~------------~~~~~~~~~~~~~~~~~~~-~------------------   54 (203)
                      .....|.|+|++|+|||||+++++.....            .......-.......+... +                  
T Consensus        20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~   99 (207)
T TIGR00073        20 HGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLP   99 (207)
T ss_pred             cCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhc
Confidence            34688999999999999999999743110            0000000000000011111 0                  


Q ss_pred             -eEEEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCH
Q 028792           55 -KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSY  133 (203)
Q Consensus        55 -~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~  133 (203)
                       ....+.++++.|.-. ..  ..+....+..+.|+|+.+.+...  .... ..     ...|.++++||+|+.+......
T Consensus       100 ~~~~d~IiIEt~G~l~-~~--~~~~~~~~~~i~Vvd~~~~d~~~--~~~~-~~-----~~~a~iiv~NK~Dl~~~~~~~~  168 (207)
T TIGR00073       100 LDDIDLLFIENVGNLV-CP--ADFDLGEHMRVVLLSVTEGDDKP--LKYP-GM-----FKEADLIVINKADLAEAVGFDV  168 (207)
T ss_pred             cCCCCEEEEecCCCcC-CC--cccccccCeEEEEEecCcccchh--hhhH-hH-----HhhCCEEEEEHHHccccchhhH
Confidence             023456777777210 00  11112345556677776544211  1111 11     1357799999999975332223


Q ss_pred             HHHHHHHHHcC--CCEEEEecCCCCCHHHHHHHHHHH
Q 028792          134 ETAKAFADEIG--IPFMETSAKSATNVEQAFMAMAAS  168 (203)
Q Consensus       134 ~~~~~~~~~~~--~~~~~~Sa~~~~gi~~~~~~l~~~  168 (203)
                      +...+..+..+  ++++++||++|.|++++++++.+.
T Consensus       169 ~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~  205 (207)
T TIGR00073       169 EKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ  205 (207)
T ss_pred             HHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            34444444433  889999999999999999999874

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.43  E-value=6.1e-12  Score=101.36  Aligned_cols=165  Identities=21%  Similarity=0.303  Sum_probs=122.5

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcE
Q 028792            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG   83 (203)
Q Consensus         4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   83 (203)
                      ....++++.++|+.++|||.|++.++++.+......+....+....+...+....+.+.|.+-. ...-+...- ..+|+
T Consensus       421 ~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv  498 (625)
T KOG1707|consen  421 TDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDV  498 (625)
T ss_pred             ccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeee
Confidence            3456799999999999999999999999888877677766777777776677777888888754 222222122 77999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-CEEEEecCCCCCHHHHH
Q 028792           84 IIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGI-PFMETSAKSATNVEQAF  162 (203)
Q Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~~  162 (203)
                      ++++||.+++.+|..+...++.-...  ...|+++|+.|+|+.+..+...-.-.+++.++++ +.+..|.+.... .++|
T Consensus       499 ~~~~YDsS~p~sf~~~a~v~~~~~~~--~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~s-~~lf  575 (625)
T KOG1707|consen  499 ACLVYDSSNPRSFEYLAEVYNKYFDL--YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLSS-NELF  575 (625)
T ss_pred             EEEecccCCchHHHHHHHHHHHhhhc--cCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCCC-chHH
Confidence            99999999999998877765543333  4789999999999987543332223788999997 466777775333 8999


Q ss_pred             HHHHHHHHHHh
Q 028792          163 MAMAASIKNRM  173 (203)
Q Consensus       163 ~~l~~~~~~~~  173 (203)
                      ..|........
T Consensus       576 ~kL~~~A~~Ph  586 (625)
T KOG1707|consen  576 IKLATMAQYPH  586 (625)
T ss_pred             HHHHHhhhCCC
Confidence            99988776544

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=99.43  E-value=3.4e-12  Score=85.73  Aligned_cols=114  Identities=30%  Similarity=0.342  Sum_probs=79.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCc-cccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEE
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDSYLESYI-STIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVV   87 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (203)
                      +||+++|..|+|||+|+.++....+...+. ++.+                           +........+.++.+++|
T Consensus         1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v   53 (124)
T smart00010        1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC   53 (124)
T ss_pred             CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence            589999999999999999997766654433 3322                           112233456778999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHH
Q 028792           88 YDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVE  159 (203)
Q Consensus        88 ~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  159 (203)
                      ++..+.++++.+  |...+......+.|.++++||.|+.+...+..+...        .++++|++++.|+.
T Consensus        54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~~~~~--------~~~~~s~~~~~~~~  115 (124)
T smart00010       54 WRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEERQVATEEGL--------EFAETSAKTPEEGE  115 (124)
T ss_pred             EEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhCcCCHHHHH--------HHHHHhCCCcchhh
Confidence            999999988655  766665554556888999999998543333333333        34556888888874

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=99.42  E-value=1.3e-11  Score=96.48  Aligned_cols=83  Identities=17%  Similarity=0.145  Sum_probs=57.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCe---------------EEEEEEEeCCChhhh---
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGK---------------TIKLQIWDTAGQERF---   70 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~---   70 (203)
                      ++|.++|.|++|||||+|+|.+........|.++.+.....+.+.+.               ...+.++|+||...-   
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~   82 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK   82 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence            78999999999999999999987744433455554455444444332               135899999994321   


Q ss_pred             -ch---hhhccccCCcEEEEEEeCC
Q 028792           71 -RT---ITSSYYRGAHGIIVVYDVT   91 (203)
Q Consensus        71 -~~---~~~~~~~~~d~~i~v~d~~   91 (203)
                       ..   .....++.+|++++|+|+.
T Consensus        83 g~glg~~fL~~i~~aD~li~VVd~f  107 (364)
T PRK09601         83 GEGLGNQFLANIREVDAIVHVVRCF  107 (364)
T ss_pred             HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence             11   2223467899999999984

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.42  E-value=1.5e-12  Score=97.64  Aligned_cols=95  Identities=23%  Similarity=0.349  Sum_probs=76.5

Q ss_pred             hhhchhhhccccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCC
Q 028792           68 ERFRTITSSYYRGAHGIIVVYDVTDQE-SFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIP  146 (203)
Q Consensus        68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~  146 (203)
                      +++..+.+.++.++|++++|+|+.++. ++..+..|+..+..   .+.|+++|+||+|+.+......+....+ ...+.+
T Consensus        24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~i~~vIV~NK~DL~~~~~~~~~~~~~~-~~~g~~   99 (245)
T TIGR00157        24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QNIEPIIVLNKIDLLDDEDMEKEQLDIY-RNIGYQ   99 (245)
T ss_pred             cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECcccCCCHHHHHHHHHHH-HHCCCe
Confidence            466777788999999999999999887 88888888876543   4689999999999976544433344444 457889


Q ss_pred             EEEEecCCCCCHHHHHHHHH
Q 028792          147 FMETSAKSATNVEQAFMAMA  166 (203)
Q Consensus       147 ~~~~Sa~~~~gi~~~~~~l~  166 (203)
                      ++++||++|+|++++|..+.
T Consensus       100 v~~~SAktg~gi~eLf~~l~  119 (245)
T TIGR00157       100 VLMTSSKNQDGLKELIEALQ  119 (245)
T ss_pred             EEEEecCCchhHHHHHhhhc
Confidence            99999999999999999875

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.41  E-value=4.8e-12  Score=99.60  Aligned_cols=159  Identities=14%  Similarity=0.240  Sum_probs=105.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCC--CCC------------CCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchh
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFADDS--YLE------------SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI   73 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~~~--~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~   73 (203)
                      .-+|+|+..-.-|||||+..|+.+.  +..            ......+.++-.+...+.-..++++|+||||+..|.+.
T Consensus         5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGE   84 (603)
T COG1217           5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGE   84 (603)
T ss_pred             cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccch
Confidence            3579999999999999999998532  211            11112233344443333333388999999999999999


Q ss_pred             hhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc-CHHHHHHHHH-------HcCC
Q 028792           74 TSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVV-SYETAKAFAD-------EIGI  145 (203)
Q Consensus        74 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~-~~~~~~~~~~-------~~~~  145 (203)
                      ....+..+|++++++|+.+..- -..+..   +.+....+.+.|+|+||+|.+..+.. -.+++..++-       ++..
T Consensus        85 VERvl~MVDgvlLlVDA~EGpM-PQTrFV---lkKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdF  160 (603)
T COG1217          85 VERVLSMVDGVLLLVDASEGPM-PQTRFV---LKKALALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDF  160 (603)
T ss_pred             hhhhhhhcceEEEEEEcccCCC-Cchhhh---HHHHHHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCC
Confidence            9999999999999999986321 111222   23333346677889999998765421 1223333333       3457


Q ss_pred             CEEEEecCCCC----------CHHHHHHHHHHHHH
Q 028792          146 PFMETSAKSAT----------NVEQAFMAMAASIK  170 (203)
Q Consensus       146 ~~~~~Sa~~~~----------gi~~~~~~l~~~~~  170 (203)
                      |++..|++.|.          ++..+|+.|++.+.
T Consensus       161 PivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp  195 (603)
T COG1217         161 PIVYASARNGTASLDPEDEADDMAPLFETILDHVP  195 (603)
T ss_pred             cEEEeeccCceeccCccccccchhHHHHHHHHhCC
Confidence            89999988764          56677777776653

>KOG3905 consensus Dynein light intermediate chain [Cell motility]

Probab=99.40  E-value=2e-11  Score=92.24  Aligned_cols=166  Identities=15%  Similarity=0.303  Sum_probs=118.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEEC--CeEEEEEEEeCCChhhhchhhhccccCC----c
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQD--GKTIKLQIWDTAGQERFRTITSSYYRGA----H   82 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~----d   82 (203)
                      -+|+++|..++||||||.+|.+.+   .+.+..+.+|....+..+  +.-.++.+|-+-|+-.+..+....+...    .
T Consensus        53 k~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aet  129 (473)
T KOG3905|consen   53 KNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAET  129 (473)
T ss_pred             CeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccce
Confidence            579999999999999999998765   334455556666555432  2236788999999877777766665443    4


Q ss_pred             EEEEEEeCCChhh-HHHHHHHHHHHHhh----------------------------------------------------
Q 028792           83 GIIVVYDVTDQES-FNNVKQWLNEIDRY----------------------------------------------------  109 (203)
Q Consensus        83 ~~i~v~d~~~~~s-~~~~~~~~~~l~~~----------------------------------------------------  109 (203)
                      ++|++.|.++|.. ++.+..|...+...                                                    
T Consensus       130 lviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~l  209 (473)
T KOG3905|consen  130 LVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVL  209 (473)
T ss_pred             EEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCccccccc
Confidence            8899999999954 55566676643210                                                    


Q ss_pred             ---------cCCCCcEEEEEeCCCCCC----CcccCH-------HHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHHHH
Q 028792          110 ---------ASENVNKLLVGNKCDLTA----NKVVSY-------ETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI  169 (203)
Q Consensus       110 ---------~~~~~p~iiv~nK~D~~~----~~~~~~-------~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~  169 (203)
                               .+.++|+++|++|+|...    ..+...       ..++.||..+++.++.+|+++..|++-++..|.+.+
T Consensus       210 lPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr~  289 (473)
T KOG3905|consen  210 LPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHRS  289 (473)
T ss_pred             cccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHHh
Confidence                     112466899999999742    111111       235678888999999999999999999999999988


Q ss_pred             HHHhccCC
Q 028792          170 KNRMASQP  177 (203)
Q Consensus       170 ~~~~~~~~  177 (203)
                      ....-..+
T Consensus       290 yG~~fttp  297 (473)
T KOG3905|consen  290 YGFPFTTP  297 (473)
T ss_pred             cCcccCCc
Confidence            76544444

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=99.40  E-value=2.1e-11  Score=98.64  Aligned_cols=166  Identities=16%  Similarity=0.296  Sum_probs=117.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECC--eEEEEEEEeCCChhhhchhhhccccC----
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDG--KTIKLQIWDTAGQERFRTITSSYYRG----   80 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~----   80 (203)
                      ..-.|+|+|..++||||||.+|.+.+   .+.++.+.+|....+.-++  ...++++|.+.|...+..+....+..    
T Consensus        24 ~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~  100 (472)
T PF05783_consen   24 SEKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLP  100 (472)
T ss_pred             CCceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCccccc
Confidence            34689999999999999999987644   3445667777776665432  23578999999877777777666654    


Q ss_pred             CcEEEEEEeCCChhhHH-HHHHHHHHHHh-------------------------h------c------------------
Q 028792           81 AHGIIVVYDVTDQESFN-NVKQWLNEIDR-------------------------Y------A------------------  110 (203)
Q Consensus        81 ~d~~i~v~d~~~~~s~~-~~~~~~~~l~~-------------------------~------~------------------  110 (203)
                      --++|+|+|.+.|..+- .+..|+..++.                         +      .                  
T Consensus       101 ~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~  180 (472)
T PF05783_consen  101 NTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDE  180 (472)
T ss_pred             ceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccccccc
Confidence            24899999999987643 45555542211                         0      0                  


Q ss_pred             -------------CCCCcEEEEEeCCCCCCC----ccc-------CHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHH
Q 028792          111 -------------SENVNKLLVGNKCDLTAN----KVV-------SYETAKAFADEIGIPFMETSAKSATNVEQAFMAMA  166 (203)
Q Consensus       111 -------------~~~~p~iiv~nK~D~~~~----~~~-------~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  166 (203)
                                   +.++|++||++|+|....    ...       -.+.++.++-.+|+.++.||++...+++-++..|.
T Consensus       181 ~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~  260 (472)
T PF05783_consen  181 SVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYIL  260 (472)
T ss_pred             cccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHH
Confidence                         013689999999996431    111       11235677888999999999999999999999998


Q ss_pred             HHHHHHhcc
Q 028792          167 ASIKNRMAS  175 (203)
Q Consensus       167 ~~~~~~~~~  175 (203)
                      +.+....-.
T Consensus       261 h~l~~~~f~  269 (472)
T PF05783_consen  261 HRLYGFPFK  269 (472)
T ss_pred             HHhccCCCC
Confidence            888764433

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>PRK07560 elongation factor EF-2; Reviewed

Probab=99.39  E-value=4e-12  Score=108.97  Aligned_cols=118  Identities=23%  Similarity=0.227  Sum_probs=77.4

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhcCCC--CC--------------CCccccceeeEEEEE--EECCeEEEEEEEeCCC
Q 028792            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSY--LE--------------SYISTIGVDFKIRTV--EQDGKTIKLQIWDTAG   66 (203)
Q Consensus         5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~--~~--------------~~~~~~~~~~~~~~~--~~~~~~~~~~i~D~~g   66 (203)
                      .++.-+|+++|+.++|||||+.+|+...-  ..              +....++.......+  ..++....++++||||
T Consensus        17 ~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG   96 (731)
T PRK07560         17 PEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPG   96 (731)
T ss_pred             hhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCC
Confidence            35667899999999999999999974221  10              000111222222222  2344457899999999


Q ss_pred             hhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 028792           67 QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLT  126 (203)
Q Consensus        67 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~  126 (203)
                      +..+.......+..+|++++|+|+...-.... ...+.....   .+.|.++++||+|..
T Consensus        97 ~~df~~~~~~~l~~~D~avlVvda~~g~~~~t-~~~~~~~~~---~~~~~iv~iNK~D~~  152 (731)
T PRK07560         97 HVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQT-ETVLRQALR---ERVKPVLFINKVDRL  152 (731)
T ss_pred             ccChHHHHHHHHHhcCEEEEEEECCCCCCccH-HHHHHHHHH---cCCCeEEEEECchhh
Confidence            98888778888899999999999876432211 222222222   246789999999975

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=99.39  E-value=6.2e-13  Score=99.09  Aligned_cols=112  Identities=19%  Similarity=0.205  Sum_probs=58.0

Q ss_pred             EEEEEeCCChhhhchhhhccc--------cCCcEEEEEEeCCChhhH-HHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 028792           58 KLQIWDTAGQERFRTITSSYY--------RGAHGIIVVYDVTDQESF-NNVKQWLNEIDRYASENVNKLLVGNKCDLTAN  128 (203)
Q Consensus        58 ~~~i~D~~g~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s~-~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~  128 (203)
                      .+.++|||||.++...+....        ...-++++++|..-..+. ..+..++..+......+.|.+.|+||+|+.+.
T Consensus        92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~  171 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK  171 (238)
T ss_dssp             SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred             cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence            578999999987655443332        345688999998633221 12222233322222236899999999999762


Q ss_pred             cc-------cC------------HHHHHHHHHHc---C-C-CEEEEecCCCCCHHHHHHHHHHHH
Q 028792          129 KV-------VS------------YETAKAFADEI---G-I-PFMETSAKSATNVEQAFMAMAASI  169 (203)
Q Consensus       129 ~~-------~~------------~~~~~~~~~~~---~-~-~~~~~Sa~~~~gi~~~~~~l~~~~  169 (203)
                      ..       ..            .....+++...   + . .++++|+.+++|+.+++..+-+.+
T Consensus       172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~  236 (238)
T PF03029_consen  172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN  236 (238)
T ss_dssp             HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred             hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence            20       00            00111122221   2 3 799999999999999999887654

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>PTZ00416 elongation factor 2; Provisional

Probab=99.39  E-value=2.1e-12  Score=111.84  Aligned_cols=118  Identities=18%  Similarity=0.201  Sum_probs=78.8

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhcCCC--C--------------CCCccccceeeEEEEEEEC--------CeEEEEE
Q 028792            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSY--L--------------ESYISTIGVDFKIRTVEQD--------GKTIKLQ   60 (203)
Q Consensus         5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~--~--------------~~~~~~~~~~~~~~~~~~~--------~~~~~~~   60 (203)
                      .+..-+|+|+|+.++|||||+++|+...-  .              .+....++.......+.++        +....++
T Consensus        16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~   95 (836)
T PTZ00416         16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN   95 (836)
T ss_pred             ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence            35567999999999999999999985221  0              0011112222222223332        2246799


Q ss_pred             EEeCCChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 028792           61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLT  126 (203)
Q Consensus        61 i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~  126 (203)
                      ++||||+..+.......+..+|++|+|+|+.+.-.... ...+..+   ...+.|+++++||+|+.
T Consensus        96 liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t-~~~~~~~---~~~~~p~iv~iNK~D~~  157 (836)
T PTZ00416         96 LIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQT-ETVLRQA---LQERIRPVLFINKVDRA  157 (836)
T ss_pred             EEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccH-HHHHHHH---HHcCCCEEEEEEChhhh
Confidence            99999999888878888899999999999987433221 2222222   22368999999999986

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=99.39  E-value=2.4e-12  Score=111.70  Aligned_cols=119  Identities=18%  Similarity=0.201  Sum_probs=80.3

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhcCCCC----------------CCCccccceeeEEEEEEE--------------C
Q 028792            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYL----------------ESYISTIGVDFKIRTVEQ--------------D   53 (203)
Q Consensus         4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~--------------~   53 (203)
                      +.+..-+|+|+|+.++|||||+.+|+...-.                .+.....+.......+.+              +
T Consensus        15 ~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~   94 (843)
T PLN00116         15 KKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERD   94 (843)
T ss_pred             CccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccC
Confidence            3456789999999999999999999843210                011111222222222222              1


Q ss_pred             CeEEEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 028792           54 GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLT  126 (203)
Q Consensus        54 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~  126 (203)
                      +..+.++++||||+..|.......+..+|++|+|+|+.+.-.......|    ......+.|+++++||+|..
T Consensus        95 ~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~----~~~~~~~~p~i~~iNK~D~~  163 (843)
T PLN00116         95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL----RQALGERIRPVLTVNKMDRC  163 (843)
T ss_pred             CCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHH----HHHHHCCCCEEEEEECCccc
Confidence            2357889999999999988888888999999999999865332222222    22223468999999999986

>cd01882 BMS1 Bms1

Probab=99.39  E-value=1e-11  Score=92.11  Aligned_cols=140  Identities=17%  Similarity=0.185  Sum_probs=81.0

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEE
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV   86 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (203)
                      ....|+++|.+|+|||||++.|.............+ .+   .+ ......++.++|+||.-  .. .......+|++++
T Consensus        38 ~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g-~i---~i-~~~~~~~i~~vDtPg~~--~~-~l~~ak~aDvVll  109 (225)
T cd01882          38 PPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKG-PI---TV-VTGKKRRLTFIECPNDI--NA-MIDIAKVADLVLL  109 (225)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhcccCccccccc-cE---EE-EecCCceEEEEeCCchH--HH-HHHHHHhcCEEEE
Confidence            346789999999999999999986422111111111 01   11 11234678899999853  22 2234578999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcCCCCcE-EEEEeCCCCCCCcccC---HHHHHH-HHHH--cCCCEEEEecCCCCCH
Q 028792           87 VYDVTDQESFNNVKQWLNEIDRYASENVNK-LLVGNKCDLTANKVVS---YETAKA-FADE--IGIPFMETSAKSATNV  158 (203)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~-iiv~nK~D~~~~~~~~---~~~~~~-~~~~--~~~~~~~~Sa~~~~gi  158 (203)
                      |+|++....... ...+..+..   .+.|. ++|+||+|+.+.....   .+++.. +...  .+.+++.+||+++-.+
T Consensus       110 viDa~~~~~~~~-~~i~~~l~~---~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~~~  184 (225)
T cd01882         110 LIDASFGFEMET-FEFLNILQV---HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHGRY  184 (225)
T ss_pred             EEecCcCCCHHH-HHHHHHHHH---cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCCCC
Confidence            999975433211 222222322   24674 4599999986432211   122222 2221  2468999999987433

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=99.38  E-value=1.1e-11  Score=96.28  Aligned_cols=103  Identities=14%  Similarity=0.131  Sum_probs=66.1

Q ss_pred             EEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc--CHH
Q 028792           57 IKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVV--SYE  134 (203)
Q Consensus        57 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~--~~~  134 (203)
                      +.+.++||+|......   .....+|.++++.+....+.+..+.   ..+..     ..-++|+||+|+......  ...
T Consensus       149 ~d~viieT~Gv~qs~~---~i~~~aD~vlvv~~p~~gd~iq~~k---~gi~E-----~aDIiVVNKaDl~~~~~a~~~~~  217 (332)
T PRK09435        149 YDVILVETVGVGQSET---AVAGMVDFFLLLQLPGAGDELQGIK---KGIME-----LADLIVINKADGDNKTAARRAAA  217 (332)
T ss_pred             CCEEEEECCCCccchh---HHHHhCCEEEEEecCCchHHHHHHH---hhhhh-----hhheEEeehhcccchhHHHHHHH
Confidence            5788999999653222   2467799999998744444332222   11211     223899999998754321  112


Q ss_pred             HHHHHHHH-------cCCCEEEEecCCCCCHHHHHHHHHHHHH
Q 028792          135 TAKAFADE-------IGIPFMETSAKSATNVEQAFMAMAASIK  170 (203)
Q Consensus       135 ~~~~~~~~-------~~~~~~~~Sa~~~~gi~~~~~~l~~~~~  170 (203)
                      ++......       +..+++.+||.++.|++++++.|.+.+.
T Consensus       218 el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~  260 (332)
T PRK09435        218 EYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA  260 (332)
T ss_pred             HHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            22222222       2358999999999999999999998765

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=99.38  E-value=4.5e-12  Score=89.44  Aligned_cols=78  Identities=24%  Similarity=0.218  Sum_probs=57.4

Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC--CCEEEEecCCCCCHH
Q 028792           83 GIIVVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTANKVVSYETAKAFADEIG--IPFMETSAKSATNVE  159 (203)
Q Consensus        83 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~  159 (203)
                      .-|+|+|++..+..         .++..+ -...-++|+||.|+.+....+.+...+-+++.+  .+++++|+++|+|++
T Consensus       120 ~~v~VidvteGe~~---------P~K~gP~i~~aDllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~  190 (202)
T COG0378         120 LRVVVIDVTEGEDI---------PRKGGPGIFKADLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLD  190 (202)
T ss_pred             eEEEEEECCCCCCC---------cccCCCceeEeeEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHH
Confidence            78888888765421         111000 011338899999999887787788887777765  799999999999999


Q ss_pred             HHHHHHHHHH
Q 028792          160 QAFMAMAASI  169 (203)
Q Consensus       160 ~~~~~l~~~~  169 (203)
                      +++.|+....
T Consensus       191 ~~~~~i~~~~  200 (202)
T COG0378         191 EWLRFIEPQA  200 (202)
T ss_pred             HHHHHHHhhc
Confidence            9999987654

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=99.38  E-value=8.9e-12  Score=100.42  Aligned_cols=150  Identities=21%  Similarity=0.238  Sum_probs=100.3

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCC-------------------------------CCCCCccccceeeEEEEEEECCe
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFADDS-------------------------------YLESYISTIGVDFKIRTVEQDGK   55 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~   55 (203)
                      -.+.++++|.-.+|||||+-+|+..-                               -..+....++.+.....  ++-.
T Consensus       176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~--fes~  253 (603)
T KOG0458|consen  176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTW--FESK  253 (603)
T ss_pred             cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEE--EecC
Confidence            45889999999999999999986411                               01122233333333333  3444


Q ss_pred             EEEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChh---hHHH---HHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc
Q 028792           56 TIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQE---SFNN---VKQWLNEIDRYASENVNKLLVGNKCDLTANK  129 (203)
Q Consensus        56 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~---~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~  129 (203)
                      ...++|+|+||+..|-.....-..++|+.++|+|++-.+   .|+.   .++....++.+.  -..++|++||+|+.+..
T Consensus       254 ~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg--i~qlivaiNKmD~V~Ws  331 (603)
T KOG0458|consen  254 SKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG--ISQLIVAINKMDLVSWS  331 (603)
T ss_pred             ceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC--cceEEEEeecccccCcc
Confidence            577899999998888777777788999999999997421   2221   233333333332  34678889999998876


Q ss_pred             ccCHHHHHH----HH-HHc-----CCCEEEEecCCCCCHHH
Q 028792          130 VVSYETAKA----FA-DEI-----GIPFMETSAKSATNVEQ  160 (203)
Q Consensus       130 ~~~~~~~~~----~~-~~~-----~~~~~~~Sa~~~~gi~~  160 (203)
                      +-.++++..    |. +..     .+.++++|+..|+|+-.
T Consensus       332 q~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k  372 (603)
T KOG0458|consen  332 QDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIK  372 (603)
T ss_pred             HHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccc
Confidence            665665542    33 232     35799999999998753

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=99.36  E-value=9.8e-13  Score=97.08  Aligned_cols=117  Identities=15%  Similarity=0.162  Sum_probs=69.5

Q ss_pred             EEEEEEeCCChhhhch------hh-hcc-ccCCcEEEEEEeCCC---hhhHHH-HHHHHHHHHhhcCCCCcEEEEEeCCC
Q 028792           57 IKLQIWDTAGQERFRT------IT-SSY-YRGAHGIIVVYDVTD---QESFNN-VKQWLNEIDRYASENVNKLLVGNKCD  124 (203)
Q Consensus        57 ~~~~i~D~~g~~~~~~------~~-~~~-~~~~d~~i~v~d~~~---~~s~~~-~~~~~~~l~~~~~~~~p~iiv~nK~D  124 (203)
                      +...++||||+.+...      .. ..+ .....++++++|...   +.+|-. +..--..+.   ....|+|+++||.|
T Consensus       116 ~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSily---ktklp~ivvfNK~D  192 (366)
T KOG1532|consen  116 FDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILY---KTKLPFIVVFNKTD  192 (366)
T ss_pred             cCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHH---hccCCeEEEEeccc
Confidence            4578999999754221      11 111 233568888888753   333321 111111122   23689999999999


Q ss_pred             CCCCcc----c-CHHHHHHHHH---------------------HcCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 028792          125 LTANKV----V-SYETAKAFAD---------------------EIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQ  176 (203)
Q Consensus       125 ~~~~~~----~-~~~~~~~~~~---------------------~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~~~  176 (203)
                      +.+..-    + +++..++-.+                     -.++..+-+|+.+|.|++++|..+-..+.++....
T Consensus       193 v~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy~~~y  270 (366)
T KOG1532|consen  193 VSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEYEEEY  270 (366)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHHHHHh
Confidence            876421    0 1111111001                     01478999999999999999999999888765543

>cd01900 YchF YchF subfamily

Probab=99.33  E-value=3.5e-11  Score=91.17  Aligned_cols=81  Identities=17%  Similarity=0.154  Sum_probs=55.8

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCe---------------EEEEEEEeCCChhhh----c
Q 028792           11 LLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGK---------------TIKLQIWDTAGQERF----R   71 (203)
Q Consensus        11 i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~----~   71 (203)
                      |+++|.|+||||||+|+|.+........+.++.+.....+.+.+.               ...+.++|+||...-    .
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~   80 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE   80 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence            579999999999999999987765444455555555555554442               235899999994321    1


Q ss_pred             hh---hhccccCCcEEEEEEeCC
Q 028792           72 TI---TSSYYRGAHGIIVVYDVT   91 (203)
Q Consensus        72 ~~---~~~~~~~~d~~i~v~d~~   91 (203)
                      ++   ....++++|++++|+|+.
T Consensus        81 glg~~fL~~i~~~D~li~VV~~f  103 (274)
T cd01900          81 GLGNKFLSHIREVDAIAHVVRCF  103 (274)
T ss_pred             HHHHHHHHHHHhCCEEEEEEeCc
Confidence            12   223357899999999874

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=99.33  E-value=4.5e-11  Score=84.71  Aligned_cols=62  Identities=24%  Similarity=0.298  Sum_probs=42.6

Q ss_pred             EEEEeCCChhh----hchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCC
Q 028792           59 LQIWDTAGQER----FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKC  123 (203)
Q Consensus        59 ~~i~D~~g~~~----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~  123 (203)
                      +.++|+||...    ....+..++..+|++++|.+++...+-.+...+.+.....   ...+++|.||+
T Consensus       103 ~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~---~~~~i~V~nk~  168 (168)
T PF00350_consen  103 LTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD---KSRTIFVLNKA  168 (168)
T ss_dssp             EEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT---CSSEEEEEE-G
T ss_pred             eEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC---CCeEEEEEcCC
Confidence            78999999542    3355677789999999999999865544444444444332   34588889984

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.33  E-value=5.5e-11  Score=90.62  Aligned_cols=160  Identities=19%  Similarity=0.202  Sum_probs=91.6

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhc-------CCCCCCCccccceeeEEEEEE-------ECCeEEEEEEEeCCChhhhch
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFAD-------DSYLESYISTIGVDFKIRTVE-------QDGKTIKLQIWDTAGQERFRT   72 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~-------~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~i~D~~g~~~~~~   72 (203)
                      -.+++.++|.-.||||||.++|..       +.-+.+.....+.+.....+.       ..+..+++.++|+||+...-+
T Consensus         6 ~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLIR   85 (522)
T KOG0461|consen    6 SNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLIR   85 (522)
T ss_pred             ceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHHH
Confidence            459999999999999999999973       122222222233222222222       245567899999999865433


Q ss_pred             hhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccC---HHHHHHHHHHc------
Q 028792           73 ITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVS---YETAKAFADEI------  143 (203)
Q Consensus        73 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~---~~~~~~~~~~~------  143 (203)
                      ....-.+-.|..++|+|+...-.-...+-+   +.... .-...++|+||.|...+....   .+......+.+      
T Consensus        86 tiiggaqiiDlm~lviDv~kG~QtQtAEcL---iig~~-~c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~f~  161 (522)
T KOG0461|consen   86 TIIGGAQIIDLMILVIDVQKGKQTQTAECL---IIGEL-LCKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTGFD  161 (522)
T ss_pred             HHHhhhheeeeeeEEEehhcccccccchhh---hhhhh-hccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcCcC
Confidence            333334457899999998742110111111   11111 124568889999976543221   11112222211      


Q ss_pred             -CCCEEEEecCCC----CCHHHHHHHHHHHHH
Q 028792          144 -GIPFMETSAKSA----TNVEQAFMAMAASIK  170 (203)
Q Consensus       144 -~~~~~~~Sa~~~----~gi~~~~~~l~~~~~  170 (203)
                       +.|++++||+.|    +++.++.+.|...+.
T Consensus       162 g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if  193 (522)
T KOG0461|consen  162 GNSPIVEVSAADGYFKEEMIQELKEALESRIF  193 (522)
T ss_pred             CCCceeEEecCCCccchhHHHHHHHHHHHhhc
Confidence             379999999999    555555555555444

>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.32  E-value=1e-10  Score=90.46  Aligned_cols=131  Identities=21%  Similarity=0.246  Sum_probs=91.5

Q ss_pred             ceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChh----------hHHHHHHHHHHHHhhcC
Q 028792           42 GVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQE----------SFNNVKQWLNEIDRYAS  111 (203)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~l~~~~~  111 (203)
                      +..+....+.+.+  ..+.++|.+|+..-+..|.+++.+++++|||+++++-+          .+.+...+++.+.....
T Consensus       182 T~GI~e~~F~~k~--~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~  259 (354)
T KOG0082|consen  182 TTGIVEVEFTIKG--LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKW  259 (354)
T ss_pred             cCCeeEEEEEeCC--CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcc
Confidence            3345555566666  77899999999988999999999999999999998532          23333445444433322


Q ss_pred             -CCCcEEEEEeCCCCCCCc---------------ccCHHHHHHHHHH-----c-----CCCEEEEecCCCCCHHHHHHHH
Q 028792          112 -ENVNKLLVGNKCDLTANK---------------VVSYETAKAFADE-----I-----GIPFMETSAKSATNVEQAFMAM  165 (203)
Q Consensus       112 -~~~p~iiv~nK~D~~~~~---------------~~~~~~~~~~~~~-----~-----~~~~~~~Sa~~~~gi~~~~~~l  165 (203)
                       .+.++|++.||.|+.+..               ....+++..+...     +     .+-+..+.|.+-.+|+.+|..+
T Consensus       260 F~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av  339 (354)
T KOG0082|consen  260 FANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAV  339 (354)
T ss_pred             cccCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHH
Confidence             468999999999986431               1233344333221     1     2446678999999999999999


Q ss_pred             HHHHHHHhc
Q 028792          166 AASIKNRMA  174 (203)
Q Consensus       166 ~~~~~~~~~  174 (203)
                      .+.+.....
T Consensus       340 ~d~Ii~~nl  348 (354)
T KOG0082|consen  340 TDTIIQNNL  348 (354)
T ss_pred             HHHHHHHHH
Confidence            998886543

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=99.32  E-value=1.1e-10  Score=91.79  Aligned_cols=143  Identities=15%  Similarity=0.201  Sum_probs=88.0

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcC----CCC-------------CC-Cc---cccceee---EEEEEE-ECCeEEEEE
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADD----SYL-------------ES-YI---STIGVDF---KIRTVE-QDGKTIKLQ   60 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~----~~~-------------~~-~~---~~~~~~~---~~~~~~-~~~~~~~~~   60 (203)
                      .-.+.|.|+|+-++|||||||+|.+.    ...             .+ ..   .|+.+.+   ....+. .++....+.
T Consensus        15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr   94 (492)
T TIGR02836        15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR   94 (492)
T ss_pred             CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence            44588999999999999999999876    222             11 11   1222222   222232 345557889


Q ss_pred             EEeCCChhhh--------ch------h---------------hhcccc-CCcEEEEEE-eCC----ChhhHHHHH-HHHH
Q 028792           61 IWDTAGQERF--------RT------I---------------TSSYYR-GAHGIIVVY-DVT----DQESFNNVK-QWLN  104 (203)
Q Consensus        61 i~D~~g~~~~--------~~------~---------------~~~~~~-~~d~~i~v~-d~~----~~~s~~~~~-~~~~  104 (203)
                      ++||+|-..-        ..      -               .+..+. ++|+.++|. |.+    .++.+.+.. .++.
T Consensus        95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~  174 (492)
T TIGR02836        95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIE  174 (492)
T ss_pred             EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence            9999983210        00      0               222345 899999998 775    123333333 3555


Q ss_pred             HHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecC
Q 028792          105 EIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAK  153 (203)
Q Consensus       105 ~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  153 (203)
                      .+...   ++|+++++|+.|-....  ..+...++..+++++++.+|+.
T Consensus       175 eLk~~---~kPfiivlN~~dp~~~e--t~~l~~~l~eky~vpvl~v~c~  218 (492)
T TIGR02836       175 ELKEL---NKPFIILLNSTHPYHPE--TEALRQELEEKYDVPVLAMDVE  218 (492)
T ss_pred             HHHhc---CCCEEEEEECcCCCCch--hHHHHHHHHHHhCCceEEEEHH
Confidence            55443   79999999999943221  3344556677888888887765

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=99.30  E-value=4.8e-11  Score=91.05  Aligned_cols=143  Identities=17%  Similarity=0.279  Sum_probs=77.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC----------ccccceeeEEEEEEECCeEEEEEEEeCCChhh-------
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESY----------ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER-------   69 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------   69 (203)
                      ..|+|+|+|.+|+|||||||.|++.......          ..+.........+.-++..+.+.++||||...       
T Consensus         3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~   82 (281)
T PF00735_consen    3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC   82 (281)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence            4689999999999999999999975443221          12233334444555677889999999999211       


Q ss_pred             -----------hchh---------hhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc
Q 028792           70 -----------FRTI---------TSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANK  129 (203)
Q Consensus        70 -----------~~~~---------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~  129 (203)
                                 +...         ....-..+|+++|+++++...- .  ...+..+..... ..++|-|+.|+|.....
T Consensus        83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L-~--~~Di~~mk~Ls~-~vNvIPvIaKaD~lt~~  158 (281)
T PF00735_consen   83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGL-K--PLDIEFMKRLSK-RVNVIPVIAKADTLTPE  158 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS----HHHHHHHHHHTT-TSEEEEEESTGGGS-HH
T ss_pred             hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccc-h--HHHHHHHHHhcc-cccEEeEEecccccCHH
Confidence                       1000         0111255899999999875321 1  112223444433 58899999999986543


Q ss_pred             ccC--HHHHHHHHHHcCCCEEEEecC
Q 028792          130 VVS--YETAKAFADEIGIPFMETSAK  153 (203)
Q Consensus       130 ~~~--~~~~~~~~~~~~~~~~~~Sa~  153 (203)
                      ++.  .+.+.+....+++.++.....
T Consensus       159 el~~~k~~i~~~l~~~~I~~f~f~~~  184 (281)
T PF00735_consen  159 ELQAFKQRIREDLEENNIKIFDFPED  184 (281)
T ss_dssp             HHHHHHHHHHHHHHHTT--S------
T ss_pred             HHHHHHHHHHHHHHHcCceeeccccc
Confidence            322  223445556677877765443

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>TIGR00750 lao LAO/AO transport system ATPase

Probab=99.30  E-value=2e-11  Score=94.33  Aligned_cols=103  Identities=16%  Similarity=0.143  Sum_probs=64.8

Q ss_pred             EEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHH--
Q 028792           57 IKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYE--  134 (203)
Q Consensus        57 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~--  134 (203)
                      +.+.++||+|....   ....+..+|.++++.+..   +.+++......+     .+.|.++++||+|+.........  
T Consensus       127 ~D~viidT~G~~~~---e~~i~~~aD~i~vv~~~~---~~~el~~~~~~l-----~~~~~ivv~NK~Dl~~~~~~~~~~~  195 (300)
T TIGR00750       127 YDVIIVETVGVGQS---EVDIANMADTFVVVTIPG---TGDDLQGIKAGL-----MEIADIYVVNKADGEGATNVTIARL  195 (300)
T ss_pred             CCEEEEeCCCCchh---hhHHHHhhceEEEEecCC---ccHHHHHHHHHH-----hhhccEEEEEcccccchhHHHHHHH
Confidence            56889999985421   223567788888886543   333333433323     14677999999998754321110  


Q ss_pred             ----HHHHHHH---HcCCCEEEEecCCCCCHHHHHHHHHHHHH
Q 028792          135 ----TAKAFAD---EIGIPFMETSAKSATNVEQAFMAMAASIK  170 (203)
Q Consensus       135 ----~~~~~~~---~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~  170 (203)
                          ....+..   .+..+++++||++++|+++++++|.+.+.
T Consensus       196 ~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~  238 (300)
T TIGR00750       196 MLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT  238 (300)
T ss_pred             HHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence                0011111   12346999999999999999999988754

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.30  E-value=5.4e-12  Score=90.92  Aligned_cols=145  Identities=21%  Similarity=0.292  Sum_probs=90.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCC-CCccccceeeEEEEEEECCeEEEEEEEeCCChhhh-----chhhhccccCC
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFADDSYLE-SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF-----RTITSSYYRGA   81 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-----~~~~~~~~~~~   81 (203)
                      .-||+++|.+|+||||+--.++.+.... ...++.+.++.-..+.+- ++..+++||++|++.+     .......+.++
T Consensus         4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~Rfl-Gnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV   82 (295)
T KOG3886|consen    4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFL-GNLVLNLWDCGGQEEFMENYLSSQEDNIFRNV   82 (295)
T ss_pred             cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhh-hhheeehhccCCcHHHHHHHHhhcchhhheeh
Confidence            3589999999999999877666443221 112233333333333222 2367899999998843     22456678999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHH---HHHhhcCCCCcEEEEEeCCCCCCCcc--cC----HHHHHHHHHHcCCCEEEEec
Q 028792           82 HGIIVVYDVTDQESFNNVKQWLN---EIDRYASENVNKLLVGNKCDLTANKV--VS----YETAKAFADEIGIPFMETSA  152 (203)
Q Consensus        82 d~~i~v~d~~~~~s~~~~~~~~~---~l~~~~~~~~p~iiv~nK~D~~~~~~--~~----~~~~~~~~~~~~~~~~~~Sa  152 (203)
                      +++++|||++..+--.++..+-.   .+....+ ...+.++.+|+|+.....  ..    .+....+....++.++++|.
T Consensus        83 ~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP-~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsi  161 (295)
T KOG3886|consen   83 QVLIYVFDVESREMEKDFHYYQKCLEALLQNSP-EAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSI  161 (295)
T ss_pred             eeeeeeeeccchhhhhhHHHHHHHHHHHHhcCC-cceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccch
Confidence            99999999998764444444333   3444443 567788899999975422  11    12233333344567888887


Q ss_pred             CC
Q 028792          153 KS  154 (203)
Q Consensus       153 ~~  154 (203)
                      .+
T Consensus       162 wD  163 (295)
T KOG3886|consen  162 WD  163 (295)
T ss_pred             hh
Confidence            64

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=99.28  E-value=4.9e-11  Score=93.39  Aligned_cols=159  Identities=13%  Similarity=0.138  Sum_probs=77.6

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhc--CCCCCCCccc--cceeeEEEEEEECCeEEEEEEEeCCChhhhchhh-----hc
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFAD--DSYLESYIST--IGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTIT-----SS   76 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~-----~~   76 (203)
                      ...++|+|+|.+|+|||||||+|-+  ..-.. ..++  ++++.....+..... -.+.+||+||.....-..     ..
T Consensus        33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~-aA~tGv~etT~~~~~Y~~p~~-pnv~lWDlPG~gt~~f~~~~Yl~~~  110 (376)
T PF05049_consen   33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEG-AAPTGVVETTMEPTPYPHPKF-PNVTLWDLPGIGTPNFPPEEYLKEV  110 (376)
T ss_dssp             H--EEEEEEESTTSSHHHHHHHHTT--TTSTT-S--SSSHSCCTS-EEEE-SS--TTEEEEEE--GGGSS--HHHHHHHT
T ss_pred             cCceEEEEECCCCCCHHHHHHHHhCCCCCCcC-cCCCCCCcCCCCCeeCCCCCC-CCCeEEeCCCCCCCCCCHHHHHHHc
Confidence            3568999999999999999999964  22211 1221  111112222222211 137899999954322111     12


Q ss_pred             cccCCcEEEEEEeCCChhhHHHHHH-HHHHHHhhcCCCCcEEEEEeCCCCC-------CCcccCH----HHHHHHHHH--
Q 028792           77 YYRGAHGIIVVYDVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDLT-------ANKVVSY----ETAKAFADE--  142 (203)
Q Consensus        77 ~~~~~d~~i~v~d~~~~~s~~~~~~-~~~~l~~~~~~~~p~iiv~nK~D~~-------~~~~~~~----~~~~~~~~~--  142 (203)
                      -+..-|.+|++.+-.    |....- +...+..   .++|+++|-+|.|..       .+...+.    +++++.+..  
T Consensus       111 ~~~~yD~fiii~s~r----f~~ndv~La~~i~~---~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L  183 (376)
T PF05049_consen  111 KFYRYDFFIIISSER----FTENDVQLAKEIQR---MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENL  183 (376)
T ss_dssp             TGGG-SEEEEEESSS------HHHHHHHHHHHH---TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHH
T ss_pred             cccccCEEEEEeCCC----CchhhHHHHHHHHH---cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHH
Confidence            356788888877632    222222 2233333   378999999999951       1222222    233333322  


Q ss_pred             --cC---CCEEEEecCCC--CCHHHHHHHHHHHHHHHh
Q 028792          143 --IG---IPFMETSAKSA--TNVEQAFMAMAASIKNRM  173 (203)
Q Consensus       143 --~~---~~~~~~Sa~~~--~gi~~~~~~l~~~~~~~~  173 (203)
                        .+   -++|-+|..+-  .+...+.+.|.+.+...+
T Consensus       184 ~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~K  221 (376)
T PF05049_consen  184 QKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHK  221 (376)
T ss_dssp             HCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGG
T ss_pred             HHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHH
Confidence              23   36899998874  457777777776665543

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=99.27  E-value=4.8e-11  Score=98.61  Aligned_cols=164  Identities=17%  Similarity=0.178  Sum_probs=106.7

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEEC------------Ce----EEEEEEEeCCChh
Q 028792            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQD------------GK----TIKLQIWDTAGQE   68 (203)
Q Consensus         5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~------------~~----~~~~~i~D~~g~~   68 (203)
                      +-+..=++|+|.-.+|||-|+..+-+...-.....+++..+....+...            +.    .=-+.++||||++
T Consensus       472 ~lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghE  551 (1064)
T KOG1144|consen  472 NLRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHE  551 (1064)
T ss_pred             hcCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCch
Confidence            3455678999999999999999997654433322222222222221111            00    0126799999999


Q ss_pred             hhchhhhccccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc-------------cC
Q 028792           69 RFRTITSSYYRGAHGIIVVYDVTD---QESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKV-------------VS  132 (203)
Q Consensus        69 ~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~-------------~~  132 (203)
                      .|..+.......||.+|+|+|+..   +++++.+.       .+...+.|+||.+||+|-.-.+.             ..
T Consensus       552 sFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~-------lLR~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~  624 (1064)
T KOG1144|consen  552 SFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESIN-------LLRMRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQK  624 (1064)
T ss_pred             hhhhhhhccccccceEEEEeehhccCCcchhHHHH-------HHHhcCCCeEEeehhhhhhcccccCCCchHHHHHHHhh
Confidence            999999999999999999999974   45543332       22334689999999999542210             00


Q ss_pred             HHH-----------HHHHHHH-cC-------------CCEEEEecCCCCCHHHHHHHHHHHHHHHhcc
Q 028792          133 YET-----------AKAFADE-IG-------------IPFMETSAKSATNVEQAFMAMAASIKNRMAS  175 (203)
Q Consensus       133 ~~~-----------~~~~~~~-~~-------------~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~~  175 (203)
                      ..-           +.+|+.+ ++             +.++++||..|+||.+++.+|+++....+..
T Consensus       625 k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~  692 (1064)
T KOG1144|consen  625 KDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVE  692 (1064)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHHH
Confidence            000           1122211 01             3478999999999999999999987665543

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=99.27  E-value=4.7e-10  Score=82.15  Aligned_cols=85  Identities=24%  Similarity=0.241  Sum_probs=64.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhc-------hhhhccccCC
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR-------TITSSYYRGA   81 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~~~~~~~~~   81 (203)
                      -+|+++|.|.+|||||+..+............++.+..+..+.+++  ..+++.|.||..+-.       ...-...+.+
T Consensus        63 aRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~g--a~IQllDLPGIieGAsqgkGRGRQviavArta  140 (364)
T KOG1486|consen   63 ARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNG--ANIQLLDLPGIIEGASQGKGRGRQVIAVARTA  140 (364)
T ss_pred             eEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecC--ceEEEecCcccccccccCCCCCceEEEEeecc
Confidence            6899999999999999999986554444444556677788888888  678899999954322       2233456789


Q ss_pred             cEEEEEEeCCChhh
Q 028792           82 HGIIVVYDVTDQES   95 (203)
Q Consensus        82 d~~i~v~d~~~~~s   95 (203)
                      |+++.|.|++..+.
T Consensus       141 DlilMvLDatk~e~  154 (364)
T KOG1486|consen  141 DLILMVLDATKSED  154 (364)
T ss_pred             cEEEEEecCCcchh
Confidence            99999999986543

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=99.25  E-value=3.5e-11  Score=91.21  Aligned_cols=55  Identities=25%  Similarity=0.237  Sum_probs=41.0

Q ss_pred             CcEEEEEeCCCCCCCcccCHHHHHHHHHHc--CCCEEEEecCCCCCHHHHHHHHHHH
Q 028792          114 VNKLLVGNKCDLTANKVVSYETAKAFADEI--GIPFMETSAKSATNVEQAFMAMAAS  168 (203)
Q Consensus       114 ~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~~~~~l~~~  168 (203)
                      .+-++|+||+|+.+......+...+..+..  .++++++||++|+|++++.+||...
T Consensus       231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~  287 (290)
T PRK10463        231 AASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ  287 (290)
T ss_pred             cCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            455999999999754333344444444443  4789999999999999999999774

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=99.22  E-value=4.9e-10  Score=92.73  Aligned_cols=121  Identities=17%  Similarity=0.211  Sum_probs=71.6

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCc-cccceeeEEEEEEECCeEEEEEEEeCCChhhhc-------hh---
Q 028792            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYI-STIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR-------TI---   73 (203)
Q Consensus         5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~---   73 (203)
                      -++.++|+++|.+|+||||++|+|++........ ...+..........++  ..+.++||||.....       ..   
T Consensus       115 LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk~  192 (763)
T TIGR00993       115 LDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILSS  192 (763)
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHHHH
Confidence            3567899999999999999999999876433221 1122222222233444  678999999955321       11   


Q ss_pred             hhcccc--CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCC--CCcEEEEEeCCCCCC
Q 028792           74 TSSYYR--GAHGIIVVYDVTDQESFNNVKQWLNEIDRYASE--NVNKLLVGNKCDLTA  127 (203)
Q Consensus        74 ~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~--~~p~iiv~nK~D~~~  127 (203)
                      ...++.  ..|+++||..+.......+-..++..+......  -..+|||+|..|..+
T Consensus       193 Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp  250 (763)
T TIGR00993       193 VKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP  250 (763)
T ss_pred             HHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence            111333  479999998875322211112333334332221  246788999999875

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>smart00053 DYNc Dynamin, GTPase

Probab=99.20  E-value=3.5e-10  Score=84.12  Aligned_cols=69  Identities=13%  Similarity=0.169  Sum_probs=42.7

Q ss_pred             EEEEEEeCCChhh-------------hchhhhcccc-CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeC
Q 028792           57 IKLQIWDTAGQER-------------FRTITSSYYR-GAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNK  122 (203)
Q Consensus        57 ~~~~i~D~~g~~~-------------~~~~~~~~~~-~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK  122 (203)
                      ..+.++|+||...             ...+...++. ..+++++|+|+...-+-......   .......+.++++|+||
T Consensus       125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~i---a~~ld~~~~rti~ViTK  201 (240)
T smart00053      125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKL---AKEVDPQGERTIGVITK  201 (240)
T ss_pred             CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHH---HHHHHHcCCcEEEEEEC
Confidence            3578999999642             1223445566 45689999988643221122222   22233346899999999


Q ss_pred             CCCCCC
Q 028792          123 CDLTAN  128 (203)
Q Consensus       123 ~D~~~~  128 (203)
                      .|..+.
T Consensus       202 ~D~~~~  207 (240)
T smart00053      202 LDLMDE  207 (240)
T ss_pred             CCCCCc
Confidence            998753

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.19  E-value=1.4e-10  Score=87.66  Aligned_cols=163  Identities=18%  Similarity=0.201  Sum_probs=104.4

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCC---CCCCCcccccee------------------eEEEEEEEC------CeEEE
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDS---YLESYISTIGVD------------------FKIRTVEQD------GKTIK   58 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~---~~~~~~~~~~~~------------------~~~~~~~~~------~~~~~   58 (203)
                      .-.++|.++|.-.-|||||.++|.+--   .+.+....++..                  .+...-.+.      .-..+
T Consensus         8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~   87 (415)
T COG5257           8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR   87 (415)
T ss_pred             CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence            357999999999999999999998521   111111110000                  000000011      11246


Q ss_pred             EEEEeCCChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc--cCHHHH
Q 028792           59 LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKV--VSYETA  136 (203)
Q Consensus        59 ~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~--~~~~~~  136 (203)
                      +.+.|.||++-.-....+-..-.|+.++|++++.+..--..++.+-.+.-..  -+.++++=||.|+...+.  .+.+++
T Consensus        88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIig--ik~iiIvQNKIDlV~~E~AlE~y~qI  165 (415)
T COG5257          88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIG--IKNIIIVQNKIDLVSRERALENYEQI  165 (415)
T ss_pred             EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhc--cceEEEEecccceecHHHHHHHHHHH
Confidence            7899999998655544445566899999999996543222334333333222  256788899999976432  345566


Q ss_pred             HHHHHHc---CCCEEEEecCCCCCHHHHHHHHHHHHH
Q 028792          137 KAFADEI---GIPFMETSAKSATNVEQAFMAMAASIK  170 (203)
Q Consensus       137 ~~~~~~~---~~~~~~~Sa~~~~gi~~~~~~l~~~~~  170 (203)
                      .+|.+-.   +++++++||..+.|++-+++.|.+.+.
T Consensus       166 k~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ip  202 (415)
T COG5257         166 KEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIP  202 (415)
T ss_pred             HHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCC
Confidence            6665543   579999999999999999999888774

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=99.19  E-value=8.4e-11  Score=94.28  Aligned_cols=162  Identities=24%  Similarity=0.395  Sum_probs=123.8

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEE
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV   86 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (203)
                      .++|+.|+|..++|||+|+.+++.+.+.+...+..  ..+.+++..++...-+.+.|.+|..     ...|..++|++||
T Consensus        29 pelk~givg~~~sgktalvhr~ltgty~~~e~~e~--~~~kkE~vv~gqs~lLlirdeg~~~-----~aQft~wvdavIf  101 (749)
T KOG0705|consen   29 PELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEG--GRFKKEVVVDGQSHLLLIRDEGGHP-----DAQFCQWVDAVVF  101 (749)
T ss_pred             chhheeeeecccCCceeeeeeeccceeccccCCcC--ccceeeEEeeccceEeeeecccCCc-----hhhhhhhccceEE
Confidence            35899999999999999999999888766644333  3556777778888888899998832     3457788999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCC--CcccCHHHHHHHHHHc-CCCEEEEecCCCCCHHHHH
Q 028792           87 VYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTA--NKVVSYETAKAFADEI-GIPFMETSAKSATNVEQAF  162 (203)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~--~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~~~  162 (203)
                      ||.+.|.++|..+..+...+..+.. ...|+++++++.-...  .+.+......++...+ .+.+|++++..|.++..+|
T Consensus       102 vf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rvf  181 (749)
T KOG0705|consen  102 VFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVERVF  181 (749)
T ss_pred             EEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHHHH
Confidence            9999999999988887777755444 4678888887654432  2344455555555444 5899999999999999999


Q ss_pred             HHHHHHHHHHhcc
Q 028792          163 MAMAASIKNRMAS  175 (203)
Q Consensus       163 ~~l~~~~~~~~~~  175 (203)
                      ..+...+...++.
T Consensus       182 ~~~~~k~i~~~~~  194 (749)
T KOG0705|consen  182 QEVAQKIVQLRKY  194 (749)
T ss_pred             HHHHHHHHHHHhh
Confidence            9998887765443

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=99.16  E-value=6.4e-11  Score=89.52  Aligned_cols=156  Identities=15%  Similarity=0.130  Sum_probs=97.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhh--chh------hhcccc
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF--RTI------TSSYYR   79 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~--~~~------~~~~~~   79 (203)
                      ..-|.++|..|+||||||++|..-..-+...-..+.+..........+. .+.+.||-|.-.-  .++      ....+.
T Consensus       178 ~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~-~vlltDTvGFisdLP~~LvaAF~ATLeeVa  256 (410)
T KOG0410|consen  178 SPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGN-FVLLTDTVGFISDLPIQLVAAFQATLEEVA  256 (410)
T ss_pred             CceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCc-EEEEeechhhhhhCcHHHHHHHHHHHHHHh
Confidence            3578999999999999999999544433332233333333333333332 3567899883221  111      222357


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCc----EEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCC
Q 028792           80 GAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVN----KLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSA  155 (203)
Q Consensus        80 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p----~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  155 (203)
                      .+|+++.|.|++.|+.-......+..+....-...|    ++=|-||.|..+.....        +.+  ..+.+|+++|
T Consensus       257 eadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~--------E~n--~~v~isaltg  326 (410)
T KOG0410|consen  257 EADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEE--------EKN--LDVGISALTG  326 (410)
T ss_pred             hcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCcc--------ccC--CccccccccC
Confidence            899999999999987644444455545444222222    45567888865432211        122  2788999999


Q ss_pred             CCHHHHHHHHHHHHHHHhc
Q 028792          156 TNVEQAFMAMAASIKNRMA  174 (203)
Q Consensus       156 ~gi~~~~~~l~~~~~~~~~  174 (203)
                      +|++++...+-..+.....
T Consensus       327 dgl~el~~a~~~kv~~~t~  345 (410)
T KOG0410|consen  327 DGLEELLKAEETKVASETT  345 (410)
T ss_pred             ccHHHHHHHHHHHhhhhhe
Confidence            9999999998887765443

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=99.16  E-value=4.6e-10  Score=94.69  Aligned_cols=119  Identities=18%  Similarity=0.204  Sum_probs=84.0

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhcC--CCC----------------CCCccccceeeEEEEEEECCeEEEEEEEeCCC
Q 028792            5 YDYLFKLLLIGDSGVGKSCLLLRFADD--SYL----------------ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG   66 (203)
Q Consensus         5 ~~~~~~i~i~G~~~~GKSsli~~l~~~--~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g   66 (203)
                      .++.-+|.|+|+-.+|||||..+|+..  ...                .+....++.......+.+.+ .+.++++||||
T Consensus         7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~-~~~iNlIDTPG   85 (697)
T COG0480           7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKG-DYRINLIDTPG   85 (697)
T ss_pred             cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcC-ceEEEEeCCCC
Confidence            456789999999999999999999731  111                11122334444444455553 48899999999


Q ss_pred             hhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 028792           67 QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN  128 (203)
Q Consensus        67 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~  128 (203)
                      +-.|.......++-+|++++|+|+.+.-....-.-|++ .   ...+.|.++++||+|....
T Consensus        86 HVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rq-a---~~~~vp~i~fiNKmDR~~a  143 (697)
T COG0480          86 HVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQ-A---DKYGVPRILFVNKMDRLGA  143 (697)
T ss_pred             ccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHH-H---hhcCCCeEEEEECcccccc
Confidence            99999999999999999999999986433222222333 2   2336899999999997643

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.16  E-value=5.8e-10  Score=87.65  Aligned_cols=155  Identities=16%  Similarity=0.125  Sum_probs=103.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCC---CCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEE
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDSYL---ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV   86 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (203)
                      -|...|.-.-|||||++.+.+..-+   ......++.+........++  ..+.++|.||+.++-.....-+...|..++
T Consensus         2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d--~~~~fIDvpgh~~~i~~miag~~~~d~alL   79 (447)
T COG3276           2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLED--GVMGFIDVPGHPDFISNLLAGLGGIDYALL   79 (447)
T ss_pred             eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCC--CceEEeeCCCcHHHHHHHHhhhcCCceEEE
Confidence            4667888889999999999865432   33334445444444444444  478899999998877766677788999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH---HcCCCEEEEecCCCCCHHHHHH
Q 028792           87 VYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFAD---EIGIPFMETSAKSATNVEQAFM  163 (203)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~~gi~~~~~  163 (203)
                      |+++++.-.... .+.+..+....  ....++|++|+|..+.... .+...+...   ..+++++.+|+++|+|++++..
T Consensus        80 vV~~deGl~~qt-gEhL~iLdllg--i~~giivltk~D~~d~~r~-e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~  155 (447)
T COG3276          80 VVAADEGLMAQT-GEHLLILDLLG--IKNGIIVLTKADRVDEARI-EQKIKQILADLSLANAKIFKTSAKTGRGIEELKN  155 (447)
T ss_pred             EEeCccCcchhh-HHHHHHHHhcC--CCceEEEEeccccccHHHH-HHHHHHHHhhcccccccccccccccCCCHHHHHH
Confidence            999964322211 22222233222  2344899999998764311 122222222   3347899999999999999999


Q ss_pred             HHHHHHH
Q 028792          164 AMAASIK  170 (203)
Q Consensus       164 ~l~~~~~  170 (203)
                      .|.+...
T Consensus       156 ~l~~L~~  162 (447)
T COG3276         156 ELIDLLE  162 (447)
T ss_pred             HHHHhhh
Confidence            9999874

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=99.15  E-value=5.7e-10  Score=87.53  Aligned_cols=136  Identities=15%  Similarity=0.169  Sum_probs=91.9

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHh--cCCC----------CC----------CCccccceeeEEEEEEECCeEEEEEEEeC
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFA--DDSY----------LE----------SYISTIGVDFKIRTVEQDGKTIKLQIWDT   64 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~--~~~~----------~~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~   64 (203)
                      +.-..+|+-.|.+|||||-.+|+  ++.+          ..          +....++.+.+...+.+.+  ..+++.||
T Consensus        11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~--~~iNLLDT   88 (528)
T COG4108          11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYAD--CLVNLLDT   88 (528)
T ss_pred             hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCC--eEEeccCC
Confidence            33467899999999999999986  2111          00          1122344445555556665  78899999


Q ss_pred             CChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC
Q 028792           65 AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIG  144 (203)
Q Consensus        65 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~  144 (203)
                      ||++.+.......+..+|..+.|+|+...-. .....+++..   ...+.|++-++||.|-...  -..+.+.+..+.++
T Consensus        89 PGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE-~qT~KLfeVc---rlR~iPI~TFiNKlDR~~r--dP~ELLdEiE~~L~  162 (528)
T COG4108          89 PGHEDFSEDTYRTLTAVDSAVMVIDAAKGIE-PQTLKLFEVC---RLRDIPIFTFINKLDREGR--DPLELLDEIEEELG  162 (528)
T ss_pred             CCccccchhHHHHHHhhheeeEEEecccCcc-HHHHHHHHHH---hhcCCceEEEeeccccccC--ChHHHHHHHHHHhC
Confidence            9999999989899999999999999874221 0113333333   3347999999999996433  23456666666666


Q ss_pred             CCEEEE
Q 028792          145 IPFMET  150 (203)
Q Consensus       145 ~~~~~~  150 (203)
                      +...++
T Consensus       163 i~~~Pi  168 (528)
T COG4108         163 IQCAPI  168 (528)
T ss_pred             cceecc
Confidence            554443

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=99.14  E-value=2.5e-09  Score=82.86  Aligned_cols=84  Identities=18%  Similarity=0.158  Sum_probs=58.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECC----------------eEEEEEEEeCCChh---
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDG----------------KTIKLQIWDTAGQE---   68 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~i~D~~g~~---   68 (203)
                      -+++.|+|.||+|||||+|++..........|..+.+.....+.+..                ....+.++|.+|.-   
T Consensus         2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA   81 (372)
T COG0012           2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA   81 (372)
T ss_pred             CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence            47899999999999999999997665444456655555554433211                13468899998832   


Q ss_pred             -hhchh---hhccccCCcEEEEEEeCC
Q 028792           69 -RFRTI---TSSYYRGAHGIIVVYDVT   91 (203)
Q Consensus        69 -~~~~~---~~~~~~~~d~~i~v~d~~   91 (203)
                       .-.++   ...-++++|+++.|+|+.
T Consensus        82 s~GeGLGNkFL~~IRevdaI~hVVr~f  108 (372)
T COG0012          82 SKGEGLGNKFLDNIREVDAIIHVVRCF  108 (372)
T ss_pred             ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence             22222   333468899999999975

>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.12  E-value=3.7e-10  Score=86.89  Aligned_cols=124  Identities=19%  Similarity=0.278  Sum_probs=83.3

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCc-cccceeeEEEEEEECCe------E--------------------
Q 028792            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYI-STIGVDFKIRTVEQDGK------T--------------------   56 (203)
Q Consensus         4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~------~--------------------   56 (203)
                      +.+-...|+++|.-..||||+|+.|+.+.++.... +..++++....+.-+..      .                    
T Consensus        54 dfd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~afl  133 (532)
T KOG1954|consen   54 DFDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFL  133 (532)
T ss_pred             ccccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHH
Confidence            56667889999999999999999999988876543 33333344433322111      0                    


Q ss_pred             -------------EEEEEEeCCChhh-----------hchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCC
Q 028792           57 -------------IKLQIWDTAGQER-----------FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASE  112 (203)
Q Consensus        57 -------------~~~~i~D~~g~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~  112 (203)
                                   -.++++|+||.-.           +......|...+|.++++||+-.-+--++....+..+   ..+
T Consensus       134 nRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aL---kG~  210 (532)
T KOG1954|consen  134 NRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDAL---KGH  210 (532)
T ss_pred             HHHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHh---hCC
Confidence                         0478999999321           3344566788999999999986544444444444444   344


Q ss_pred             CCcEEEEEeCCCCCCCcc
Q 028792          113 NVNKLLVGNKCDLTANKV  130 (203)
Q Consensus       113 ~~p~iiv~nK~D~~~~~~  130 (203)
                      .-.+-||.||+|+.+..+
T Consensus       211 EdkiRVVLNKADqVdtqq  228 (532)
T KOG1954|consen  211 EDKIRVVLNKADQVDTQQ  228 (532)
T ss_pred             cceeEEEeccccccCHHH
Confidence            557788999999876543

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=99.12  E-value=3.4e-09  Score=81.70  Aligned_cols=147  Identities=18%  Similarity=0.308  Sum_probs=93.2

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCC----------CccccceeeEEEEEEECCeEEEEEEEeCCChhh------
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLES----------YISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER------   69 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~------   69 (203)
                      ...++|.++|+.|+|||||+|.|++......          ..+++....+...+.-++-.+.++++||||...      
T Consensus        21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~  100 (373)
T COG5019          21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK  100 (373)
T ss_pred             CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence            5679999999999999999999997633222          234455566666666777788999999999221      


Q ss_pred             ------------hchh--------h--hccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028792           70 ------------FRTI--------T--SSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTA  127 (203)
Q Consensus        70 ------------~~~~--------~--~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~  127 (203)
                                  ++..        +  ...-..+++++|.+..+... +..+  .+..+..... .+.+|=|+.|+|...
T Consensus       101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~-l~~~--DIe~Mk~ls~-~vNlIPVI~KaD~lT  176 (373)
T COG5019         101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHG-LKPL--DIEAMKRLSK-RVNLIPVIAKADTLT  176 (373)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCC-CCHH--HHHHHHHHhc-ccCeeeeeeccccCC
Confidence                        1110        1  11224588999999876432 1111  1122333332 477788899999865


Q ss_pred             CcccC--HHHHHHHHHHcCCCEEEEecCCCCCH
Q 028792          128 NKVVS--YETAKAFADEIGIPFMETSAKSATNV  158 (203)
Q Consensus       128 ~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi  158 (203)
                      ..+..  .+.+.+....+++++|.  ..+.+.-
T Consensus       177 ~~El~~~K~~I~~~i~~~nI~vf~--pyd~e~~  207 (373)
T COG5019         177 DDELAEFKERIREDLEQYNIPVFD--PYDPEDD  207 (373)
T ss_pred             HHHHHHHHHHHHHHHHHhCCceeC--CCCcccc
Confidence            44332  34456677788999885  3555443

>cd01855 YqeH YqeH

Probab=99.09  E-value=9.3e-10  Score=79.66  Aligned_cols=94  Identities=23%  Similarity=0.263  Sum_probs=65.1

Q ss_pred             hchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHH-----HHcC
Q 028792           70 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFA-----DEIG  144 (203)
Q Consensus        70 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~-----~~~~  144 (203)
                      +...+..++..+|++++|+|++++..     .|...+... ..+.|+++|+||+|+..... ..+....+.     ...+
T Consensus        24 ~~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~~-~~~~~~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~   96 (190)
T cd01855          24 ILNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRLF-GGNNPVILVGNKIDLLPKDK-NLVRIKNWLRAKAAAGLG   96 (190)
T ss_pred             HHHHHHhcccCCcEEEEEEECccCCC-----ccchhHHHh-cCCCcEEEEEEchhcCCCCC-CHHHHHHHHHHHHHhhcC
Confidence            46677788999999999999987642     122222212 23589999999999865322 233333333     2233


Q ss_pred             C---CEEEEecCCCCCHHHHHHHHHHHHH
Q 028792          145 I---PFMETSAKSATNVEQAFMAMAASIK  170 (203)
Q Consensus       145 ~---~~~~~Sa~~~~gi~~~~~~l~~~~~  170 (203)
                      .   .++++||++++|+++++.+|.+.+.
T Consensus        97 ~~~~~i~~vSA~~~~gi~eL~~~l~~~l~  125 (190)
T cd01855          97 LKPKDVILISAKKGWGVEELINAIKKLAK  125 (190)
T ss_pred             CCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence            3   6899999999999999999988763

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=99.09  E-value=1.6e-10  Score=85.53  Aligned_cols=152  Identities=17%  Similarity=0.173  Sum_probs=81.8

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcC------CC-----CCCCcc---------------ccceeeEEEEEEECC------
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFADD------SY-----LESYIS---------------TIGVDFKIRTVEQDG------   54 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~~------~~-----~~~~~~---------------~~~~~~~~~~~~~~~------   54 (203)
                      ..+.|.|.|+||+|||||+..|...      +.     +|....               ......+...+.-.+      
T Consensus        28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls  107 (266)
T PF03308_consen   28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS  107 (266)
T ss_dssp             -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred             CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence            5678999999999999999998631      10     111000               111223333322211      


Q ss_pred             ------------eEEEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeC
Q 028792           55 ------------KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNK  122 (203)
Q Consensus        55 ------------~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK  122 (203)
                                  ..+.+.|++|.|-.+.   -.....-+|.+++|.-..-.+.+..++.-   +...     .-++|+||
T Consensus       108 ~~t~~~v~ll~aaG~D~IiiETVGvGQs---E~~I~~~aD~~v~v~~Pg~GD~iQ~~KaG---imEi-----aDi~vVNK  176 (266)
T PF03308_consen  108 RATRDAVRLLDAAGFDVIIIETVGVGQS---EVDIADMADTVVLVLVPGLGDEIQAIKAG---IMEI-----ADIFVVNK  176 (266)
T ss_dssp             HHHHHHHHHHHHTT-SEEEEEEESSSTH---HHHHHTTSSEEEEEEESSTCCCCCTB-TT---HHHH------SEEEEE-
T ss_pred             HhHHHHHHHHHHcCCCEEEEeCCCCCcc---HHHHHHhcCeEEEEecCCCccHHHHHhhh---hhhh-----ccEEEEeC
Confidence                        1245677787763221   12245679999999997655543222222   2222     22899999


Q ss_pred             CCCCCCcccCHHHHHHHHHH-------cCCCEEEEecCCCCCHHHHHHHHHHHHH
Q 028792          123 CDLTANKVVSYETAKAFADE-------IGIPFMETSAKSATNVEQAFMAMAASIK  170 (203)
Q Consensus       123 ~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~~gi~~~~~~l~~~~~  170 (203)
                      .|...... ...++......       +..+++.+||.++.|++++++.|.+...
T Consensus       177 aD~~gA~~-~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~  230 (266)
T PF03308_consen  177 ADRPGADR-TVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRD  230 (266)
T ss_dssp             -SHHHHHH-HHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             CChHHHHH-HHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            99533211 11222222221       2358999999999999999999877544

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.09  E-value=4.8e-09  Score=81.38  Aligned_cols=146  Identities=18%  Similarity=0.288  Sum_probs=91.8

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCC---------CccccceeeEEEEEEECCeEEEEEEEeCCChhh-------
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLES---------YISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER-------   69 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------   69 (203)
                      ...|.+.++|+.|.|||||||.|+...+...         ...+.........+.-+|-.++++++||||...       
T Consensus        19 G~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~   98 (366)
T KOG2655|consen   19 GFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNC   98 (366)
T ss_pred             CCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCccccccccc
Confidence            4569999999999999999999987644322         122444445555555677788999999999221       


Q ss_pred             -----------hc-------hhhhccc--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc
Q 028792           70 -----------FR-------TITSSYY--RGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANK  129 (203)
Q Consensus        70 -----------~~-------~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~  129 (203)
                                 +.       ...+.-+  ..+++++|.+..+..- +..+  .+..+.... ....+|-|+-|+|.....
T Consensus        99 w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghg-L~p~--Di~~Mk~l~-~~vNiIPVI~KaD~lT~~  174 (366)
T KOG2655|consen   99 WRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHG-LKPL--DIEFMKKLS-KKVNLIPVIAKADTLTKD  174 (366)
T ss_pred             chhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCC-CcHh--hHHHHHHHh-ccccccceeeccccCCHH
Confidence                       10       1111222  3688999999876431 1111  111122222 357778888999986654


Q ss_pred             ccC--HHHHHHHHHHcCCCEEEEecCCC
Q 028792          130 VVS--YETAKAFADEIGIPFMETSAKSA  155 (203)
Q Consensus       130 ~~~--~~~~~~~~~~~~~~~~~~Sa~~~  155 (203)
                      +..  ...+.+....++++++.......
T Consensus       175 El~~~K~~I~~~i~~~nI~vf~fp~~~~  202 (366)
T KOG2655|consen  175 ELNQFKKRIRQDIEEHNIKVFDFPTDES  202 (366)
T ss_pred             HHHHHHHHHHHHHHHcCcceecCCCCcc
Confidence            332  23456667778888887766654

>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]

Probab=99.08  E-value=8.7e-10  Score=90.42  Aligned_cols=118  Identities=21%  Similarity=0.260  Sum_probs=85.7

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-----------------ccccceeeEEEEEE---ECCeEEEEEEEe
Q 028792            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESY-----------------ISTIGVDFKIRTVE---QDGKTIKLQIWD   63 (203)
Q Consensus         4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~-----------------~~~~~~~~~~~~~~---~~~~~~~~~i~D   63 (203)
                      ..++..+|.++|+-+.|||+|+..|..+..+...                 ....+......++.   ..++.+-++++|
T Consensus       124 ~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilD  203 (971)
T KOG0468|consen  124 NPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILD  203 (971)
T ss_pred             CcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeec
Confidence            4567899999999999999999999865443221                 11112222222222   356677899999


Q ss_pred             CCChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 028792           64 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL  125 (203)
Q Consensus        64 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~  125 (203)
                      |||+-.+.......+..+|++++|+|+.+.-.+..-    ..+++......|+++|+||+|.
T Consensus       204 TPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntE----r~ikhaiq~~~~i~vviNKiDR  261 (971)
T KOG0468|consen  204 TPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTE----RIIKHAIQNRLPIVVVINKVDR  261 (971)
T ss_pred             CCCcccchHHHHHHhhhcceEEEEEEcccCceeeHH----HHHHHHHhccCcEEEEEehhHH
Confidence            999999988888999999999999999876554322    2244455557999999999995

>cd01859 MJ1464 MJ1464

Probab=99.06  E-value=6.4e-10  Score=77.94  Aligned_cols=94  Identities=21%  Similarity=0.251  Sum_probs=64.2

Q ss_pred             chhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEE
Q 028792           71 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMET  150 (203)
Q Consensus        71 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (203)
                      +.+.++.+.++|++++|+|++++..... ..+...+   ...+.|+++|+||+|+.+....  .....+....+.+++.+
T Consensus         3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~---~~~~~p~iiv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~i   76 (156)
T cd01859           3 KRLVRRIIKESDVVLEVLDARDPELTRS-RKLERYV---LELGKKLLIVLNKADLVPKEVL--EKWKSIKESEGIPVVYV   76 (156)
T ss_pred             HHHHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHHH---HhCCCcEEEEEEhHHhCCHHHH--HHHHHHHHhCCCcEEEE
Confidence            4566777888999999999987643221 1121112   1236899999999998543221  11223334456789999


Q ss_pred             ecCCCCCHHHHHHHHHHHHH
Q 028792          151 SAKSATNVEQAFMAMAASIK  170 (203)
Q Consensus       151 Sa~~~~gi~~~~~~l~~~~~  170 (203)
                      ||+++.|+++++..+.+.+.
T Consensus        77 Sa~~~~gi~~L~~~l~~~~~   96 (156)
T cd01859          77 SAKERLGTKILRRTIKELAK   96 (156)
T ss_pred             EccccccHHHHHHHHHHHHh
Confidence            99999999999999987664

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=99.03  E-value=4.3e-09  Score=79.17  Aligned_cols=106  Identities=18%  Similarity=0.136  Sum_probs=62.5

Q ss_pred             EEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHH
Q 028792           57 IKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETA  136 (203)
Q Consensus        57 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~  136 (203)
                      +.+.|++|.|-.+..   -.....+|.+++|.=.--.+.+   +-....+..+.     -++|+||.|....+.--.+..
T Consensus       144 ~DvIIVETVGvGQse---v~I~~~aDt~~~v~~pg~GD~~---Q~iK~GimEia-----Di~vINKaD~~~A~~a~r~l~  212 (323)
T COG1703         144 YDVIIVETVGVGQSE---VDIANMADTFLVVMIPGAGDDL---QGIKAGIMEIA-----DIIVINKADRKGAEKAARELR  212 (323)
T ss_pred             CCEEEEEecCCCcch---hHHhhhcceEEEEecCCCCcHH---HHHHhhhhhhh-----heeeEeccChhhHHHHHHHHH
Confidence            456788887743222   2345668988888765444433   33222233332     389999999543321111111


Q ss_pred             H--HHH----H--HcCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 028792          137 K--AFA----D--EIGIPFMETSAKSATNVEQAFMAMAASIKNRM  173 (203)
Q Consensus       137 ~--~~~----~--~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~  173 (203)
                      .  .+.    .  -+.-+++.+||.+|+|++++++.+.+...-..
T Consensus       213 ~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~~  257 (323)
T COG1703         213 SALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFLT  257 (323)
T ss_pred             HHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHHH
Confidence            1  111    1  12357999999999999999999988665443

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=99.02  E-value=7e-09  Score=77.72  Aligned_cols=142  Identities=20%  Similarity=0.161  Sum_probs=92.5

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhc----------------CCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhh
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFAD----------------DSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF   70 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~   70 (203)
                      ...+|..+|.-.-|||||..++..                +..+.+....++  +....+.++-.+..+.-.|+||+..|
T Consensus        11 phVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGIT--Intahveyet~~rhyahVDcPGHaDY   88 (394)
T COG0050          11 PHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGIT--INTAHVEYETANRHYAHVDCPGHADY   88 (394)
T ss_pred             CeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCce--eccceeEEecCCceEEeccCCChHHH
Confidence            458999999999999999998752                111222223333  44444444444456778899999988


Q ss_pred             chhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCccc---CHHHHHHHHHHcC--
Q 028792           71 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVN-KLLVGNKCDLTANKVV---SYETAKAFADEIG--  144 (203)
Q Consensus        71 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~iiv~nK~D~~~~~~~---~~~~~~~~~~~~~--  144 (203)
                      -.....-..+.|+.|+|+++.|..-    .+.++-+.-...-+.| +++++||+|+.++.++   -..+++++...++  
T Consensus        89 vKNMItgAaqmDgAILVVsA~dGpm----PqTrEHiLlarqvGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f~  164 (394)
T COG0050          89 VKNMITGAAQMDGAILVVAATDGPM----PQTREHILLARQVGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGFP  164 (394)
T ss_pred             HHHHhhhHHhcCccEEEEEcCCCCC----CcchhhhhhhhhcCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCCC
Confidence            7777667788999999999987432    1111112112222565 4566799999875433   2346777777775  


Q ss_pred             ---CCEEEEecCC
Q 028792          145 ---IPFMETSAKS  154 (203)
Q Consensus       145 ---~~~~~~Sa~~  154 (203)
                         .|++.-||..
T Consensus       165 gd~~Pii~gSal~  177 (394)
T COG0050         165 GDDTPIIRGSALK  177 (394)
T ss_pred             CCCcceeechhhh
Confidence               5688878764

>PRK12289 GTPase RsgA; Reviewed

Probab=98.95  E-value=6.1e-09  Score=81.87  Aligned_cols=91  Identities=14%  Similarity=0.191  Sum_probs=65.5

Q ss_pred             hhhhccccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEE
Q 028792           72 TITSSYYRGAHGIIVVYDVTDQE-SFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMET  150 (203)
Q Consensus        72 ~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (203)
                      .+.+..+.++|.+++|+|+.++. ....+..|+..+.   ..+.|+++|+||+|+......  +........++.+++.+
T Consensus        81 ~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~---~~~ip~ILVlNK~DLv~~~~~--~~~~~~~~~~g~~v~~i  155 (352)
T PRK12289         81 ELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAE---STGLEIVLCLNKADLVSPTEQ--QQWQDRLQQWGYQPLFI  155 (352)
T ss_pred             ceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHH---HCCCCEEEEEEchhcCChHHH--HHHHHHHHhcCCeEEEE
Confidence            34455689999999999998765 3334455554442   236899999999999643221  22233345678899999


Q ss_pred             ecCCCCCHHHHHHHHHH
Q 028792          151 SAKSATNVEQAFMAMAA  167 (203)
Q Consensus       151 Sa~~~~gi~~~~~~l~~  167 (203)
                      ||+++.|+++++..|..
T Consensus       156 SA~tg~GI~eL~~~L~~  172 (352)
T PRK12289        156 SVETGIGLEALLEQLRN  172 (352)
T ss_pred             EcCCCCCHHHHhhhhcc
Confidence            99999999999998764

>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]

Probab=98.94  E-value=2.1e-08  Score=82.72  Aligned_cols=145  Identities=17%  Similarity=0.181  Sum_probs=87.5

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-cccccee----------------------------------------
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESY-ISTIGVD----------------------------------------   44 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~----------------------------------------   44 (203)
                      +...||+|.|..++||||++|+++..+.-+.. .+++.+-                                        
T Consensus       107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~  186 (749)
T KOG0448|consen  107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL  186 (749)
T ss_pred             hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence            45689999999999999999999876543321 1211100                                        


Q ss_pred             --eEEEEEEECCe-----EEEEEEEeCCChh---hhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCC
Q 028792           45 --FKIRTVEQDGK-----TIKLQIWDTAGQE---RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENV  114 (203)
Q Consensus        45 --~~~~~~~~~~~-----~~~~~i~D~~g~~---~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~  114 (203)
                        .....+-++..     .-.+.++|.||.+   ........+...+|++|||.++.+.-+..+-..    +......+.
T Consensus       187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek~F----f~~vs~~Kp  262 (749)
T KOG0448|consen  187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEKQF----FHKVSEEKP  262 (749)
T ss_pred             CcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHHHH----HHHhhccCC
Confidence              00001111111     0146789999943   455566778899999999999877655333222    233333334


Q ss_pred             cEEEEEeCCCCCCCcccCHHHHHHHHHHcC--------CCEEEEecCC
Q 028792          115 NKLLVGNKCDLTANKVVSYETAKAFADEIG--------IPFMETSAKS  154 (203)
Q Consensus       115 p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~~  154 (203)
                      .+.|+.||+|....+....+++......+.        =.++.+||+.
T Consensus       263 niFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~e  310 (749)
T KOG0448|consen  263 NIFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAKE  310 (749)
T ss_pred             cEEEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEeccc
Confidence            456667899987665555555555433332        2488888663

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=98.93  E-value=1.4e-08  Score=74.10  Aligned_cols=145  Identities=19%  Similarity=0.272  Sum_probs=85.0

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCC-----C----CccccceeeEEEEEEECCeEEEEEEEeCCChhh-------
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLE-----S----YISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER-------   69 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-----~----~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------   69 (203)
                      ...|+|.|+|.+|.|||||+|+|+......     .    ...|+........+.-++...+++++||||...       
T Consensus        44 GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~nc  123 (336)
T KOG1547|consen   44 GFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNC  123 (336)
T ss_pred             cCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccch
Confidence            456999999999999999999997433221     1    122344455555666677778999999999221       


Q ss_pred             -----------hch--------hhhccc--cCCcEEEEEEeCCChhhHHHHHHH-HHHHHhhcCCCCcEEEEEeCCCCCC
Q 028792           70 -----------FRT--------ITSSYY--RGAHGIIVVYDVTDQESFNNVKQW-LNEIDRYASENVNKLLVGNKCDLTA  127 (203)
Q Consensus        70 -----------~~~--------~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~-~~~l~~~~~~~~p~iiv~nK~D~~~  127 (203)
                                 |..        .....+  ..+++++|.+..+...    ++.+ ++.+.+.. .-..++-|+-|+|...
T Consensus       124 WePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhs----LrplDieflkrLt-~vvNvvPVIakaDtlT  198 (336)
T KOG1547|consen  124 WEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHS----LRPLDIEFLKRLT-EVVNVVPVIAKADTLT  198 (336)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCc----cCcccHHHHHHHh-hhheeeeeEeeccccc
Confidence                       111        112223  3467888888776432    1111 11122222 2356677788999643


Q ss_pred             C--cccCHHHHHHHHHHcCCCEEEEecCCC
Q 028792          128 N--KVVSYETAKAFADEIGIPFMETSAKSA  155 (203)
Q Consensus       128 ~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~  155 (203)
                      -  +..-.+.+.+-...+++.+++--..+-
T Consensus       199 leEr~~FkqrI~~el~~~~i~vYPq~~fde  228 (336)
T KOG1547|consen  199 LEERSAFKQRIRKELEKHGIDVYPQDSFDE  228 (336)
T ss_pred             HHHHHHHHHHHHHHHHhcCccccccccccc
Confidence            1  111223344555667888887665543

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.92  E-value=7.8e-09  Score=79.50  Aligned_cols=89  Identities=15%  Similarity=0.210  Sum_probs=67.1

Q ss_pred             hhccccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEec
Q 028792           74 TSSYYRGAHGIIVVYDVTDQE-SFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSA  152 (203)
Q Consensus        74 ~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  152 (203)
                      ...++.++|.+++|+|+.++. ++..+..|+..+..   .+.|+++|+||+|+.+...  ......+....+.+++.+||
T Consensus        72 ~~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~---~~ip~iIVlNK~DL~~~~~--~~~~~~~~~~~g~~v~~vSA  146 (287)
T cd01854          72 EQVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA---AGIEPVIVLTKADLLDDEE--EELELVEALALGYPVLAVSA  146 (287)
T ss_pred             ceeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH---cCCCEEEEEEHHHCCChHH--HHHHHHHHHhCCCeEEEEEC
Confidence            344588999999999999887 77777777765543   3689999999999865421  12223334456789999999


Q ss_pred             CCCCCHHHHHHHHHH
Q 028792          153 KSATNVEQAFMAMAA  167 (203)
Q Consensus       153 ~~~~gi~~~~~~l~~  167 (203)
                      +++.|+++++..|..
T Consensus       147 ~~g~gi~~L~~~L~~  161 (287)
T cd01854         147 KTGEGLDELREYLKG  161 (287)
T ss_pred             CCCccHHHHHhhhcc
Confidence            999999999988753

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.91  E-value=9e-09  Score=75.11  Aligned_cols=161  Identities=20%  Similarity=0.260  Sum_probs=92.4

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhch---hhhccccCCcE
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT---ITSSYYRGAHG   83 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---~~~~~~~~~d~   83 (203)
                      ...+|+++|...+||||+-+..++.-.+.. .-..+.+.....-.+.+.-+.+.+||.||+-.+-.   .....++.+.+
T Consensus        26 ~kp~ilLMG~rRsGKsSI~KVVFhkMsPne-TlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gA  104 (347)
T KOG3887|consen   26 MKPRILLMGLRRSGKSSIQKVVFHKMSPNE-TLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGA  104 (347)
T ss_pred             CCceEEEEeecccCcchhhheeeeccCCCc-eeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCe
Confidence            346799999999999998777665433221 11111000000011222346799999999765432   23556899999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhh--cCCCCcEEEEEeCCCCCCCc-ccCHH-HH-----HHHH----HHcCCCEEEE
Q 028792           84 IIVVYDVTDQESFNNVKQWLNEIDRY--ASENVNKLLVGNKCDLTANK-VVSYE-TA-----KAFA----DEIGIPFMET  150 (203)
Q Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~l~~~--~~~~~p~iiv~nK~D~~~~~-~~~~~-~~-----~~~~----~~~~~~~~~~  150 (203)
                      +|||+|+.+.- ++.+..+...+.+.  .+.+..+-++++|.|..... .+..+ .+     .+++    ....+.++-+
T Consensus       105 LifvIDaQddy-~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LT  183 (347)
T KOG3887|consen  105 LIFVIDAQDDY-MEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLT  183 (347)
T ss_pred             EEEEEechHHH-HHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEe
Confidence            99999987532 12222222222221  22467888999999976432 11111 01     1111    1122456777


Q ss_pred             ecCCCCCHHHHHHHHHHHHH
Q 028792          151 SAKSATNVEQAFMAMAASIK  170 (203)
Q Consensus       151 Sa~~~~gi~~~~~~l~~~~~  170 (203)
                      |..+ ..+-|+|..+++.+.
T Consensus       184 SIyD-HSIfEAFSkvVQkLi  202 (347)
T KOG3887|consen  184 SIYD-HSIFEAFSKVVQKLI  202 (347)
T ss_pred             eecc-hHHHHHHHHHHHHHh
Confidence            7774 588899988887665

>PRK00098 GTPase RsgA; Reviewed

Probab=98.89  E-value=8.9e-09  Score=79.58  Aligned_cols=86  Identities=17%  Similarity=0.245  Sum_probs=63.2

Q ss_pred             cccCCcEEEEEEeCCChhhHHH-HHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCC
Q 028792           77 YYRGAHGIIVVYDVTDQESFNN-VKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSA  155 (203)
Q Consensus        77 ~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  155 (203)
                      +..++|++++|+|+.+++.... +..|+..+..   .+.|+++|+||+|+.+... ..+...+..+..+.+++++||+++
T Consensus        77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~~-~~~~~~~~~~~~g~~v~~vSA~~g  152 (298)
T PRK00098         77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDLE-EARELLALYRAIGYDVLELSAKEG  152 (298)
T ss_pred             eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCHH-HHHHHHHHHHHCCCeEEEEeCCCC
Confidence            4589999999999988765444 3455554432   3689999999999863322 122344455667889999999999


Q ss_pred             CCHHHHHHHHH
Q 028792          156 TNVEQAFMAMA  166 (203)
Q Consensus       156 ~gi~~~~~~l~  166 (203)
                      +|+++++..+.
T Consensus       153 ~gi~~L~~~l~  163 (298)
T PRK00098        153 EGLDELKPLLA  163 (298)
T ss_pred             ccHHHHHhhcc
Confidence            99999998863

>PRK12288 GTPase RsgA; Reviewed

Probab=98.87  E-value=2.3e-08  Score=78.62  Aligned_cols=88  Identities=19%  Similarity=0.236  Sum_probs=66.4

Q ss_pred             cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc-CHHHHHHHHHHcCCCEEEEecCCC
Q 028792           77 YYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVV-SYETAKAFADEIGIPFMETSAKSA  155 (203)
Q Consensus        77 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~  155 (203)
                      +..++|.+++|+++....++..+..|+..+.   ..+.|.++|+||+|+.+.... ..+.........+.+++++||+++
T Consensus       117 iaANvD~vlIV~s~~p~~s~~~Ldr~L~~a~---~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg  193 (347)
T PRK12288        117 IAANIDQIVIVSAVLPELSLNIIDRYLVACE---TLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTG  193 (347)
T ss_pred             EEEEccEEEEEEeCCCCCCHHHHHHHHHHHH---hcCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence            3567999999999987778888888876443   236899999999999754321 122233344566789999999999


Q ss_pred             CCHHHHHHHHHH
Q 028792          156 TNVEQAFMAMAA  167 (203)
Q Consensus       156 ~gi~~~~~~l~~  167 (203)
                      +|+++++.+|..
T Consensus       194 ~GideL~~~L~~  205 (347)
T PRK12288        194 EGLEELEAALTG  205 (347)
T ss_pred             cCHHHHHHHHhh
Confidence            999999999865

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=98.87  E-value=5.8e-09  Score=77.53  Aligned_cols=155  Identities=19%  Similarity=0.169  Sum_probs=90.5

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcc-ccceeeEEEEEEECCeEEEEEEEeCCCh----------hhhch
Q 028792            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYIS-TIGVDFKIRTVEQDGKTIKLQIWDTAGQ----------ERFRT   72 (203)
Q Consensus         4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~D~~g~----------~~~~~   72 (203)
                      +.+....+++.|..++|||||++-++.......... ..+.+.....+..+   ..+.+.|.||-          ..+..
T Consensus       132 Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~---~~~~~vDlPG~~~a~y~~~~~~d~~~  208 (320)
T KOG2486|consen  132 PKDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVG---KSWYEVDLPGYGRAGYGFELPADWDK  208 (320)
T ss_pred             CCCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeecc---ceEEEEecCCcccccCCccCcchHhH
Confidence            356779999999999999999999986544322222 33333333344443   35778999991          12222


Q ss_pred             hhhccccC---CcEEEEEEeCCChh-hHH-HHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc----cCHHHHHH-----
Q 028792           73 ITSSYYRG---AHGIIVVYDVTDQE-SFN-NVKQWLNEIDRYASENVNKLLVGNKCDLTANKV----VSYETAKA-----  138 (203)
Q Consensus        73 ~~~~~~~~---~d~~i~v~d~~~~~-s~~-~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~----~~~~~~~~-----  138 (203)
                      +...++.+   ---+++.+|++-+- -.+ ...+|      ....+.|+.+|+||+|......    .....+..     
T Consensus       209 ~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~------~ge~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l  282 (320)
T KOG2486|consen  209 FTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAW------LGENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGL  282 (320)
T ss_pred             hHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHH------HhhcCCCeEEeeehhhhhhhccccccCccccceeehhhc
Confidence            33333322   22455666766321 111 11223      2334899999999999754321    11111111     


Q ss_pred             --HHHHcCCCEEEEecCCCCCHHHHHHHHHH
Q 028792          139 --FADEIGIPFMETSAKSATNVEQAFMAMAA  167 (203)
Q Consensus       139 --~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  167 (203)
                        -......+++.+|+.++.|+++++-.|.+
T Consensus       283 ~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q  313 (320)
T KOG2486|consen  283 IRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQ  313 (320)
T ss_pred             cccceeccCCceeeecccccCceeeeeehhh
Confidence              11122357888999999999998876654

>cd01856 YlqF YlqF

Probab=98.84  E-value=1.6e-08  Score=71.95  Aligned_cols=91  Identities=21%  Similarity=0.138  Sum_probs=60.7

Q ss_pred             hhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEe
Q 028792           72 TITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETS  151 (203)
Q Consensus        72 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S  151 (203)
                      ......+.++|++++|+|++++..... ..+..    .. .+.|+++|+||+|+.+....  ....++.+.....++.+|
T Consensus        11 ~~~~~~i~~aD~il~v~D~~~~~~~~~-~~i~~----~~-~~k~~ilVlNK~Dl~~~~~~--~~~~~~~~~~~~~vi~iS   82 (171)
T cd01856          11 RQIKEKLKLVDLVIEVRDARIPLSSRN-PLLEK----IL-GNKPRIIVLNKADLADPKKT--KKWLKYFESKGEKVLFVN   82 (171)
T ss_pred             HHHHHHHhhCCEEEEEeeccCccCcCC-hhhHh----Hh-cCCCEEEEEehhhcCChHHH--HHHHHHHHhcCCeEEEEE
Confidence            344567789999999999987643211 11111    11 24789999999998543211  112233333345789999


Q ss_pred             cCCCCCHHHHHHHHHHHHH
Q 028792          152 AKSATNVEQAFMAMAASIK  170 (203)
Q Consensus       152 a~~~~gi~~~~~~l~~~~~  170 (203)
                      |+++.|++++...+...+.
T Consensus        83 a~~~~gi~~L~~~l~~~l~  101 (171)
T cd01856          83 AKSGKGVKKLLKAAKKLLK  101 (171)
T ss_pred             CCCcccHHHHHHHHHHHHH
Confidence            9999999999999988764

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.83  E-value=1e-08  Score=70.67  Aligned_cols=54  Identities=22%  Similarity=0.292  Sum_probs=38.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCh
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ   67 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~   67 (203)
                      +++++|.+|+|||||+|+|.+....... ...+.+.....+..++   .+.+|||||.
T Consensus        85 ~~~~~G~~~vGKstlin~l~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~i~DtpG~  138 (141)
T cd01857          85 TIGLVGYPNVGKSSLINALVGKKKVSVS-ATPGKTKHFQTIFLTP---TITLCDCPGL  138 (141)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeC-CCCCcccceEEEEeCC---CEEEEECCCc
Confidence            7999999999999999999987654322 1222333344454544   4689999995

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.83  E-value=1.4e-08  Score=71.02  Aligned_cols=85  Identities=18%  Similarity=0.130  Sum_probs=55.4

Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHH
Q 028792           82 HGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQA  161 (203)
Q Consensus        82 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~  161 (203)
                      |++++|+|+.++.+...  .++.. ......++|+++|+||+|+.+.... .+....+.......++.+||+++.|++++
T Consensus         1 Dvvl~VvD~~~p~~~~~--~~i~~-~~~~~~~~p~IiVlNK~Dl~~~~~~-~~~~~~~~~~~~~~ii~vSa~~~~gi~~L   76 (155)
T cd01849           1 DVILEVLDARDPLGTRS--PDIER-VLIKEKGKKLILVLNKADLVPKEVL-RKWLAYLRHSYPTIPFKISATNGQGIEKK   76 (155)
T ss_pred             CEEEEEEeccCCccccC--HHHHH-HHHhcCCCCEEEEEechhcCCHHHH-HHHHHHHHhhCCceEEEEeccCCcChhhH
Confidence            78999999988764321  12221 1222346899999999998543211 11112233333567899999999999999


Q ss_pred             HHHHHHHHH
Q 028792          162 FMAMAASIK  170 (203)
Q Consensus       162 ~~~l~~~~~  170 (203)
                      ++.+.+...
T Consensus        77 ~~~i~~~~~   85 (155)
T cd01849          77 ESAFTKQTN   85 (155)
T ss_pred             HHHHHHHhH
Confidence            999877643

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>cd01858 NGP_1 NGP-1

Probab=98.82  E-value=1.8e-08  Score=70.62  Aligned_cols=91  Identities=18%  Similarity=0.142  Sum_probs=57.8

Q ss_pred             cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCC
Q 028792           77 YYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSAT  156 (203)
Q Consensus        77 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  156 (203)
                      .+..+|++++|+|+.++..- ....+...+... ..+.|+++|+||+|+.+.... ......+.+.+...++.+||+.+.
T Consensus         5 ~l~~aD~il~VvD~~~p~~~-~~~~i~~~l~~~-~~~~p~ilVlNKiDl~~~~~~-~~~~~~~~~~~~~~~~~iSa~~~~   81 (157)
T cd01858           5 VIDSSDVVIQVLDARDPMGT-RCKHVEEYLKKE-KPHKHLIFVLNKCDLVPTWVT-ARWVKILSKEYPTIAFHASINNPF   81 (157)
T ss_pred             hhhhCCEEEEEEECCCCccc-cCHHHHHHHHhc-cCCCCEEEEEEchhcCCHHHH-HHHHHHHhcCCcEEEEEeeccccc
Confidence            45789999999999886421 112222223322 335899999999998643221 112222222222335789999999


Q ss_pred             CHHHHHHHHHHHHH
Q 028792          157 NVEQAFMAMAASIK  170 (203)
Q Consensus       157 gi~~~~~~l~~~~~  170 (203)
                      |++++++.+.+.+.
T Consensus        82 ~~~~L~~~l~~~~~   95 (157)
T cd01858          82 GKGSLIQLLRQFSK   95 (157)
T ss_pred             cHHHHHHHHHHHHh
Confidence            99999999977543

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.81  E-value=3.9e-08  Score=78.00  Aligned_cols=95  Identities=26%  Similarity=0.386  Sum_probs=68.6

Q ss_pred             hhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHH----HHHHH
Q 028792           67 QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAK----AFADE  142 (203)
Q Consensus        67 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~----~~~~~  142 (203)
                      .+.+..+...+...++++++|+|+.+...     .|...+..... +.|+++|+||+|+.... ...+.+.    ++++.
T Consensus        50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~-----s~~~~l~~~~~-~~piilV~NK~DLl~k~-~~~~~~~~~l~~~~k~  122 (360)
T TIGR03597        50 DDDFLNLLNSLGDSNALIVYVVDIFDFEG-----SLIPELKRFVG-GNPVLLVGNKIDLLPKS-VNLSKIKEWMKKRAKE  122 (360)
T ss_pred             HHHHHHHHhhcccCCcEEEEEEECcCCCC-----CccHHHHHHhC-CCCEEEEEEchhhCCCC-CCHHHHHHHHHHHHHH
Confidence            45677777788889999999999987542     23344443332 57999999999986532 2333333    34556


Q ss_pred             cCC---CEEEEecCCCCCHHHHHHHHHHH
Q 028792          143 IGI---PFMETSAKSATNVEQAFMAMAAS  168 (203)
Q Consensus       143 ~~~---~~~~~Sa~~~~gi~~~~~~l~~~  168 (203)
                      .++   .++.+||++|.|+++++..|.+.
T Consensus       123 ~g~~~~~i~~vSAk~g~gv~eL~~~l~~~  151 (360)
T TIGR03597       123 LGLKPVDIILVSAKKGNGIDELLDKIKKA  151 (360)
T ss_pred             cCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence            666   48999999999999999998654

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=98.81  E-value=1.7e-08  Score=71.73  Aligned_cols=56  Identities=25%  Similarity=0.325  Sum_probs=38.8

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCC
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG   66 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g   66 (203)
                      ..++++++|.||+|||||+|+|.+....... +..+.+.....+..+.   .+.++|+||
T Consensus       116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~-~~pg~T~~~~~~~~~~---~~~l~DtPG  171 (172)
T cd04178         116 TSITVGVVGFPNVGKSSLINSLKRSRACNVG-ATPGVTKSMQEVHLDK---KVKLLDSPG  171 (172)
T ss_pred             cCcEEEEEcCCCCCHHHHHHHHhCcccceec-CCCCeEcceEEEEeCC---CEEEEECcC
Confidence            4589999999999999999999986653221 2223333344444433   478999998

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>cd01858 NGP_1 NGP-1

Probab=98.78  E-value=2.4e-08  Score=70.08  Aligned_cols=56  Identities=16%  Similarity=0.175  Sum_probs=37.1

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCC
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG   66 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g   66 (203)
                      ..++|+++|.||+|||||+|+|.+....... +..+.+.....+..+.   .+.++||||
T Consensus       101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~-~~~g~T~~~~~~~~~~---~~~liDtPG  156 (157)
T cd01858         101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVA-PIPGETKVWQYITLMK---RIYLIDCPG  156 (157)
T ss_pred             cceEEEEEeCCCCChHHHHHHHhcCCceeeC-CCCCeeEeEEEEEcCC---CEEEEECcC
Confidence            4578999999999999999999976543321 2222223333333332   267999998

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]

Probab=98.78  E-value=9.5e-08  Score=70.56  Aligned_cols=89  Identities=20%  Similarity=0.181  Sum_probs=59.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhh-------chhhhccccCC
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF-------RTITSSYYRGA   81 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~~~~~~~~   81 (203)
                      -++.++|.|.+||||++..|.+...+......++.........+.+  .++++.|.||..+-       ........+.+
T Consensus        60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~g--aKiqlldlpgiiegakdgkgrg~qviavartc  137 (358)
T KOG1487|consen   60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKG--AKIQLLDLPGIIEGAKDGKGRGKQVIAVARTC  137 (358)
T ss_pred             eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccc--cceeeecCcchhcccccCCCCccEEEEEeecc
Confidence            4789999999999999999987554333222333333334444555  67889999995432       12233455779


Q ss_pred             cEEEEEEeCCChhhHHHH
Q 028792           82 HGIIVVYDVTDQESFNNV   99 (203)
Q Consensus        82 d~~i~v~d~~~~~s~~~~   99 (203)
                      +++++|.|+..|-+...+
T Consensus       138 nli~~vld~~kp~~hk~~  155 (358)
T KOG1487|consen  138 NLIFIVLDVLKPLSHKKI  155 (358)
T ss_pred             cEEEEEeeccCcccHHHH
Confidence            999999998776655443

>TIGR00092 GTP-binding protein YchF

Probab=98.78  E-value=2.4e-08  Score=78.37  Aligned_cols=83  Identities=16%  Similarity=0.011  Sum_probs=59.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCC-CCCCccccceeeEEEEEEECCe---------------EEEEEEEeCCChhhh--
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDSY-LESYISTIGVDFKIRTVEQDGK---------------TIKLQIWDTAGQERF--   70 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~--   70 (203)
                      +++.|+|.|++|||||++.|.+... .....|..+.+.....+.+.+.               ...+.+.|+||...-  
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs   82 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS   82 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence            7899999999999999999998776 4444455544555555554442               246789999995331  


Q ss_pred             -----chhhhccccCCcEEEEEEeCC
Q 028792           71 -----RTITSSYYRGAHGIIVVYDVT   91 (203)
Q Consensus        71 -----~~~~~~~~~~~d~~i~v~d~~   91 (203)
                           .......++.+|++++|+++.
T Consensus        83 ~g~Glgn~fL~~ir~~d~l~hVvr~f  108 (368)
T TIGR00092        83 KGEGLGNQFLANIREVDIIQHVVRCF  108 (368)
T ss_pred             cccCcchHHHHHHHhCCEEEEEEeCC
Confidence                 223344578899999999985

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=98.74  E-value=4.4e-08  Score=74.84  Aligned_cols=88  Identities=19%  Similarity=0.147  Sum_probs=64.2

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECC---------------eEEEEEEEeCCChh
Q 028792            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDG---------------KTIKLQIWDTAGQE   68 (203)
Q Consensus         4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~i~D~~g~~   68 (203)
                      +....+++.|||.|++|||||+|.|......+...|..+.+.....+.+..               ....++++|+.|..
T Consensus        16 R~~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLv   95 (391)
T KOG1491|consen   16 RDGNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLV   95 (391)
T ss_pred             CCCCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccc
Confidence            455678999999999999999999998877776667776666655554432               24568999999843


Q ss_pred             h----hchh---hhccccCCcEEEEEEeCC
Q 028792           69 R----FRTI---TSSYYRGAHGIIVVYDVT   91 (203)
Q Consensus        69 ~----~~~~---~~~~~~~~d~~i~v~d~~   91 (203)
                      .    -.++   ....++.+|+++.|+++.
T Consensus        96 kGAs~G~GLGN~FLs~iR~vDaifhVVr~f  125 (391)
T KOG1491|consen   96 KGASAGEGLGNKFLSHIRHVDAIFHVVRAF  125 (391)
T ss_pred             cCcccCcCchHHHHHhhhhccceeEEEEec
Confidence            2    1222   333468899999999874

>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]

Probab=98.72  E-value=2.1e-08  Score=72.87  Aligned_cols=120  Identities=22%  Similarity=0.245  Sum_probs=86.3

Q ss_pred             CeEEEEEEEeCCChhhhchhhhccccCCcEEEEEEeCC----------ChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeC
Q 028792           54 GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVT----------DQESFNNVKQWLNEIDRYAS-ENVNKLLVGNK  122 (203)
Q Consensus        54 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK  122 (203)
                      -..+.+.+.|.+|+..-+..|.+++.++..++|++.++          +...+++...++..+..+.. .+.++|++.||
T Consensus       196 l~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNK  275 (359)
T KOG0085|consen  196 LQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNK  275 (359)
T ss_pred             hhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEech
Confidence            33466889999999988899999999999888887765          23345555666666665544 46789999999


Q ss_pred             CCCCCCc----------------ccCHHHHHHHHHHc----C------CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 028792          123 CDLTANK----------------VVSYETAKAFADEI----G------IPFMETSAKSATNVEQAFMAMAASIKNRM  173 (203)
Q Consensus       123 ~D~~~~~----------------~~~~~~~~~~~~~~----~------~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~  173 (203)
                      .|+.+..                ..+.+.+++|..+.    +      +.-..+.|.+.+++.-+|..+.+.+++..
T Consensus       276 kDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~~  352 (359)
T KOG0085|consen  276 KDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN  352 (359)
T ss_pred             hhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHhh
Confidence            9987542                23334445554332    1      12346789999999999999999888653

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=98.72  E-value=3.7e-07  Score=71.03  Aligned_cols=157  Identities=17%  Similarity=0.126  Sum_probs=96.4

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC--------------ccccceeeEEEEEEECCe-E-------------
Q 028792            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESY--------------ISTIGVDFKIRTVEQDGK-T-------------   56 (203)
Q Consensus         5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~-~-------------   56 (203)
                      .+..+.+.+.|.-+.|||||+-.|..+..+...              .+..+.+.+...+-+++. .             
T Consensus       114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~  193 (527)
T COG5258         114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA  193 (527)
T ss_pred             CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence            456788999999999999999988755443221              112222233333322221 1             


Q ss_pred             -------EEEEEEeCCChhhhchh--hhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028792           57 -------IKLQIWDTAGQERFRTI--TSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTA  127 (203)
Q Consensus        57 -------~~~~i~D~~g~~~~~~~--~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~  127 (203)
                             --+.+.|+.|++.|...  ...+-+..|..++++.++|.-+.- .++.+-.+..   .+.|++++++|+|+.+
T Consensus       194 ~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~-tkEHLgi~~a---~~lPviVvvTK~D~~~  269 (527)
T COG5258         194 AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKM-TKEHLGIALA---MELPVIVVVTKIDMVP  269 (527)
T ss_pred             HhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchh-hhHhhhhhhh---hcCCEEEEEEecccCc
Confidence                   23678999999988553  344557799999999998865421 2222222222   2689999999999976


Q ss_pred             CcccC--HHHHHHH----------------------HHHcC---CCEEEEecCCCCCHHHHHHHH
Q 028792          128 NKVVS--YETAKAF----------------------ADEIG---IPFMETSAKSATNVEQAFMAM  165 (203)
Q Consensus       128 ~~~~~--~~~~~~~----------------------~~~~~---~~~~~~Sa~~~~gi~~~~~~l  165 (203)
                      ...+.  .+++.+.                      +-+.+   +|+|.+|+.+|+|++-+.+.+
T Consensus       270 ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f  334 (527)
T COG5258         270 DDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFF  334 (527)
T ss_pred             HHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHH
Confidence            53111  1111111                      11112   589999999999987554443

>cd01856 YlqF YlqF

Probab=98.70  E-value=6.1e-08  Score=68.96  Aligned_cols=58  Identities=22%  Similarity=0.268  Sum_probs=40.0

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCh
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ   67 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~   67 (203)
                      ++.++++++|.+|+|||||+++|.+..+... ....+.+.....+..+   ..+.++||||.
T Consensus       113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~-~~~~~~T~~~~~~~~~---~~~~~iDtpG~  170 (171)
T cd01856         113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKV-GNKPGVTKGIQWIKIS---PGIYLLDTPGI  170 (171)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence            4557999999999999999999998765322 2222333444444443   24789999994

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=98.66  E-value=4e-08  Score=68.48  Aligned_cols=58  Identities=26%  Similarity=0.232  Sum_probs=33.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC------CCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhh
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDSY------LESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF   70 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~   70 (203)
                      .++++|++|||||||+|.|.....      .........++.....+..++.   ..++||||...+
T Consensus        37 ~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g---~~iIDTPGf~~~  100 (161)
T PF03193_consen   37 TSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDG---GYIIDTPGFRSF  100 (161)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTS---EEEECSHHHHT-
T ss_pred             EEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCC---cEEEECCCCCcc
Confidence            588999999999999999997532      1121222233334445555433   358999996543

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.65  E-value=9.6e-08  Score=73.16  Aligned_cols=58  Identities=24%  Similarity=0.331  Sum_probs=39.9

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCh
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ   67 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~   67 (203)
                      ...++++++|.||+|||||+|+|.+....... ...+.+.....+..+.   .+.++||||.
T Consensus       116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~-~~~g~T~~~~~~~~~~---~~~l~DtPG~  173 (276)
T TIGR03596       116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVG-NRPGVTKGQQWIKLSD---GLELLDTPGI  173 (276)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCccccC-CCCCeecceEEEEeCC---CEEEEECCCc
Confidence            35689999999999999999999976543221 1222233344444433   4689999996

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.65  E-value=1.1e-07  Score=73.12  Aligned_cols=58  Identities=26%  Similarity=0.337  Sum_probs=40.3

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCh
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ   67 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~   67 (203)
                      ...++++++|.||+|||||+|+|.+....... +..+.+.....+..+.   .+.++||||.
T Consensus       119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~-~~~g~T~~~~~~~~~~---~~~l~DtPGi  176 (287)
T PRK09563        119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTG-NRPGVTKAQQWIKLGK---GLELLDTPGI  176 (287)
T ss_pred             cCceEEEEECCCCCCHHHHHHHHhcCCccccC-CCCCeEEEEEEEEeCC---cEEEEECCCc
Confidence            35689999999999999999999986643221 2223333344444443   4779999995

>cd01855 YqeH YqeH

Probab=98.65  E-value=5.8e-08  Score=70.27  Aligned_cols=56  Identities=18%  Similarity=0.281  Sum_probs=37.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCC-------CCccccceeeEEEEEEECCeEEEEEEEeCCC
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFADDSYLE-------SYISTIGVDFKIRTVEQDGKTIKLQIWDTAG   66 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g   66 (203)
                      ..+++++|.+|+|||||+|+|.+.....       ......+++.....+..+.   .+.++||||
T Consensus       127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG  189 (190)
T cd01855         127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPG  189 (190)
T ss_pred             CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcC
Confidence            3579999999999999999999754311       1112223344445554543   468999999

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.64  E-value=1.9e-07  Score=71.46  Aligned_cols=92  Identities=23%  Similarity=0.173  Sum_probs=62.1

Q ss_pred             hhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEec
Q 028792           73 ITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSA  152 (203)
Q Consensus        73 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  152 (203)
                      .....+..+|++++|+|+.++.+... ..+...+     .+.|+++|+||+|+.+...  .+...++.+..+.+++.+||
T Consensus        14 ~~~~~l~~aDvVl~V~Dar~p~~~~~-~~i~~~l-----~~kp~IiVlNK~DL~~~~~--~~~~~~~~~~~~~~vi~iSa   85 (276)
T TIGR03596        14 EIKEKLKLVDVVIEVLDARIPLSSRN-PMIDEIR-----GNKPRLIVLNKADLADPAV--TKQWLKYFEEKGIKALAINA   85 (276)
T ss_pred             HHHHHHhhCCEEEEEEeCCCCCCCCC-hhHHHHH-----CCCCEEEEEEccccCCHHH--HHHHHHHHHHcCCeEEEEEC
Confidence            34566789999999999987644221 1111111     2579999999999864321  11222223334568899999


Q ss_pred             CCCCCHHHHHHHHHHHHHHH
Q 028792          153 KSATNVEQAFMAMAASIKNR  172 (203)
Q Consensus       153 ~~~~gi~~~~~~l~~~~~~~  172 (203)
                      +++.|++++...+.+.+.+.
T Consensus        86 ~~~~gi~~L~~~i~~~~~~~  105 (276)
T TIGR03596        86 KKGKGVKKIIKAAKKLLKEK  105 (276)
T ss_pred             CCcccHHHHHHHHHHHHHHh
Confidence            99999999999998877654

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]

Probab=98.63  E-value=1.8e-08  Score=79.02  Aligned_cols=152  Identities=16%  Similarity=0.193  Sum_probs=96.6

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhcC--------CCC----------CCCccccceeeEEEEEEECCeEEEEEEEeCC
Q 028792            4 EYDYLFKLLLIGDSGVGKSCLLLRFADD--------SYL----------ESYISTIGVDFKIRTVEQDGKTIKLQIWDTA   65 (203)
Q Consensus         4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~--------~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~   65 (203)
                      ...+.-+|.++..-.+||||.-.+++.-        ..+          ......++  +.+.-+.++.+.++++++|||
T Consensus        33 ~~akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergit--iqsaav~fdwkg~rinlidtp  110 (753)
T KOG0464|consen   33 AIAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGIT--IQSAAVNFDWKGHRINLIDTP  110 (753)
T ss_pred             chhhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCce--eeeeeeecccccceEeeecCC
Confidence            3345568899999999999999998631        111          11222333  334344444444899999999


Q ss_pred             ChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC
Q 028792           66 GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGI  145 (203)
Q Consensus        66 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~  145 (203)
                      |+-.|.-....+++-.|+++.|||++..-.-..+..|++    ....+.|-+.++||+|.....-.  -.+....+++++
T Consensus       111 ghvdf~leverclrvldgavav~dasagve~qtltvwrq----adk~~ip~~~finkmdk~~anfe--~avdsi~ekl~a  184 (753)
T KOG0464|consen  111 GHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQ----ADKFKIPAHCFINKMDKLAANFE--NAVDSIEEKLGA  184 (753)
T ss_pred             CcceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehh----ccccCCchhhhhhhhhhhhhhhh--hHHHHHHHHhCC
Confidence            999998888999999999999999985433223334433    33457899999999997643221  223444556665


Q ss_pred             CEE--EEecCCCCCHHHHHH
Q 028792          146 PFM--ETSAKSATNVEQAFM  163 (203)
Q Consensus       146 ~~~--~~Sa~~~~gi~~~~~  163 (203)
                      ..+  .+..-...|....|-
T Consensus       185 k~l~l~lpi~eak~fnkg~l  204 (753)
T KOG0464|consen  185 KALKLQLPIGEAKGFNKGFL  204 (753)
T ss_pred             ceEEEEecccccccccchHH
Confidence            433  333334445543333

>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A

Probab=98.63  E-value=2.1e-06  Score=67.96  Aligned_cols=158  Identities=18%  Similarity=0.244  Sum_probs=92.1

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhc-----------------CCCCCCC----ccccceeeEE---EEEEE-CCeEEEEEE
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFAD-----------------DSYLESY----ISTIGVDFKI---RTVEQ-DGKTIKLQI   61 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~-----------------~~~~~~~----~~~~~~~~~~---~~~~~-~~~~~~~~i   61 (203)
                      -.+=|.||||-.+||||||++|..                 ++.|++.    .-|+.+.+.+   ..+.. ++..+++++
T Consensus        16 GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRL   95 (492)
T PF09547_consen   16 GDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRL   95 (492)
T ss_pred             CceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEE
Confidence            346789999999999999999853                 1222221    1122222222   12333 566789999


Q ss_pred             EeCCCh-----hhh---------chhh---------------hcccc--CCcEEEEEEeCC----ChhhHHHHHH-HHHH
Q 028792           62 WDTAGQ-----ERF---------RTIT---------------SSYYR--GAHGIIVVYDVT----DQESFNNVKQ-WLNE  105 (203)
Q Consensus        62 ~D~~g~-----~~~---------~~~~---------------~~~~~--~~d~~i~v~d~~----~~~s~~~~~~-~~~~  105 (203)
                      +|+-|-     ..|         ..-|               +..+.  ..-++++.-|.+    .++.+.++.+ ..+.
T Consensus        96 iDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~E  175 (492)
T PF09547_consen   96 IDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEE  175 (492)
T ss_pred             EeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHH
Confidence            999871     011         0001               11111  123677777766    3455555544 4444


Q ss_pred             HHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHHHHH
Q 028792          106 IDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIK  170 (203)
Q Consensus       106 l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~  170 (203)
                      |...   ++|+++++|-.+-.  .....+...++..+++++++++++.. -.-+++..-|.+.+.
T Consensus       176 Lk~i---gKPFvillNs~~P~--s~et~~L~~eL~ekY~vpVlpvnc~~-l~~~DI~~Il~~vLy  234 (492)
T PF09547_consen  176 LKEI---GKPFVILLNSTKPY--SEETQELAEELEEKYDVPVLPVNCEQ-LREEDITRILEEVLY  234 (492)
T ss_pred             HHHh---CCCEEEEEeCCCCC--CHHHHHHHHHHHHHhCCcEEEeehHH-cCHHHHHHHHHHHHh
Confidence            5444   78999999988643  33445667788889999999887663 233444444444333

It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.

>cd01859 MJ1464 MJ1464

Probab=98.63  E-value=1.4e-07  Score=65.99  Aligned_cols=56  Identities=21%  Similarity=0.202  Sum_probs=38.4

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCC
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG   66 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g   66 (203)
                      ...+++++|.+++|||||+++|.+..... ..++.+.+.....+..++   .+.+|||||
T Consensus       100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~-~~~~~~~t~~~~~~~~~~---~~~~~DtpG  155 (156)
T cd01859         100 KEGKVGVVGYPNVGKSSIINALKGRHSAS-TSPSPGYTKGEQLVKITS---KIYLLDTPG  155 (156)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCccc-cCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence            45789999999999999999999755322 223444333333333332   578999998

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.62  E-value=5.4e-07  Score=73.42  Aligned_cols=140  Identities=16%  Similarity=0.158  Sum_probs=81.8

Q ss_pred             CCCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCc
Q 028792            3 NEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAH   82 (203)
Q Consensus         3 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d   82 (203)
                      ++.+..+=++|+||||+||||||+.|...-....... +   ....+ ...++..+++++++|.+  ... ......-+|
T Consensus        64 ~d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~-i---~GPiT-vvsgK~RRiTflEcp~D--l~~-miDvaKIaD  135 (1077)
T COG5192          64 KDLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDE-I---RGPIT-VVSGKTRRITFLECPSD--LHQ-MIDVAKIAD  135 (1077)
T ss_pred             ccCCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhc-c---CCceE-EeecceeEEEEEeChHH--HHH-HHhHHHhhh
Confidence            3556668889999999999999999985332111110 0   11111 23466688999999943  222 223445699


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCcccCHHHH-----HHHHHHc-CCCEEEEecCC
Q 028792           83 GIIVVYDVTDQESFNNVKQWLNEIDRYASENVN-KLLVGNKCDLTANKVVSYETA-----KAFADEI-GIPFMETSAKS  154 (203)
Q Consensus        83 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~iiv~nK~D~~~~~~~~~~~~-----~~~~~~~-~~~~~~~Sa~~  154 (203)
                      ++++++|.+-.-.++.+. +++.+..   ++.| ++-|++..|+.....-....-     +.|..-+ ++.+|.+|...
T Consensus       136 LVlLlIdgnfGfEMETmE-FLnil~~---HGmPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV~  210 (1077)
T COG5192         136 LVLLLIDGNFGFEMETME-FLNILIS---HGMPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGVE  210 (1077)
T ss_pred             eeEEEeccccCceehHHH-HHHHHhh---cCCCceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEecccc
Confidence            999999997433332222 3333333   3445 566789999875432212211     2222222 57888888654

>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.61  E-value=6.9e-07  Score=69.37  Aligned_cols=156  Identities=19%  Similarity=0.219  Sum_probs=92.7

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCc----------------ccc-------ceeeEEEEEEE----------
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYI----------------STI-------GVDFKIRTVEQ----------   52 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~----------------~~~-------~~~~~~~~~~~----------   52 (203)
                      -..++++++|.-.+|||||+-.|..+..+....                .|.       +.+..-..+.+          
T Consensus       165 fievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~  244 (591)
T KOG1143|consen  165 FIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIV  244 (591)
T ss_pred             ceEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHH
Confidence            456899999999999999998887655432111                011       10000011111          


Q ss_pred             CCeEEEEEEEeCCChhhhchhhhcccc--CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc
Q 028792           53 DGKTIKLQIWDTAGQERFRTITSSYYR--GAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKV  130 (203)
Q Consensus        53 ~~~~~~~~i~D~~g~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~  130 (203)
                      +...--++++|..|+..|......-+.  ..|..++|+++...-.+.. ++.+..+...   +.|+.++++|+|+.+...
T Consensus       245 e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT-rEHLgl~~AL---~iPfFvlvtK~Dl~~~~~  320 (591)
T KOG1143|consen  245 EKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT-REHLGLIAAL---NIPFFVLVTKMDLVDRQG  320 (591)
T ss_pred             hhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc-HHHHHHHHHh---CCCeEEEEEeeccccchh
Confidence            111224789999999888665443332  3678899999876544322 2333323332   689999999999976521


Q ss_pred             ------------------------cCHHHHHHHHHHc---C-CCEEEEecCCCCCHHHHHHHH
Q 028792          131 ------------------------VSYETAKAFADEI---G-IPFMETSAKSATNVEQAFMAM  165 (203)
Q Consensus       131 ------------------------~~~~~~~~~~~~~---~-~~~~~~Sa~~~~gi~~~~~~l  165 (203)
                                              -+.+++..-++..   + .|+|.+|+..|+|++-+...|
T Consensus       321 ~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~fL  383 (591)
T KOG1143|consen  321 LKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTFL  383 (591)
T ss_pred             HHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHHH
Confidence                                    1112222112211   2 589999999999987655444

>COG1161 Predicted GTPases [General function prediction only]

Probab=98.60  E-value=1.2e-07  Score=74.07  Aligned_cols=57  Identities=23%  Similarity=0.319  Sum_probs=42.6

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCh
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ   67 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~   67 (203)
                      +.++++|+|.|++|||||||+|.+...... .+..+.+.....+..+..   +.++||||.
T Consensus       131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~-s~~PG~Tk~~q~i~~~~~---i~LlDtPGi  187 (322)
T COG1161         131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKT-SNRPGTTKGIQWIKLDDG---IYLLDTPGI  187 (322)
T ss_pred             cceEEEEEcCCCCcHHHHHHHHhcccceee-CCCCceecceEEEEcCCC---eEEecCCCc
Confidence            457899999999999999999998776322 233355556666666653   789999995

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.57  E-value=8.4e-08  Score=74.60  Aligned_cols=94  Identities=24%  Similarity=0.238  Sum_probs=56.2

Q ss_pred             EEEEEEeCCChhhhchh----hhc--------cccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeCC
Q 028792           57 IKLQIWDTAGQERFRTI----TSS--------YYRGAHGIIVVYDVTDQE-SFNNVKQWLNEIDRYASENVNKLLVGNKC  123 (203)
Q Consensus        57 ~~~~i~D~~g~~~~~~~----~~~--------~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~iiv~nK~  123 (203)
                      +.+.++||||.......    ...        .-...+..++|+|++... .+..+..    +...   -.+.-+|+||.
T Consensus       197 ~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~----f~~~---~~~~giIlTKl  269 (318)
T PRK10416        197 IDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKA----FHEA---VGLTGIILTKL  269 (318)
T ss_pred             CCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHH----HHhh---CCCCEEEEECC
Confidence            57899999995432211    111        113467889999998533 3322222    2111   12447889999


Q ss_pred             CCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHH
Q 028792          124 DLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFM  163 (203)
Q Consensus       124 D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  163 (203)
                      |....    .=.+.......++|+..++  +|++++++-.
T Consensus       270 D~t~~----~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl~~  303 (318)
T PRK10416        270 DGTAK----GGVVFAIADELGIPIKFIG--VGEGIDDLQP  303 (318)
T ss_pred             CCCCC----ccHHHHHHHHHCCCEEEEe--CCCChhhCcc
Confidence            95432    2234455566799998888  7888877643

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.56  E-value=2.6e-07  Score=71.15  Aligned_cols=127  Identities=24%  Similarity=0.232  Sum_probs=75.8

Q ss_pred             CCChhh-hchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH
Q 028792           64 TAGQER-FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADE  142 (203)
Q Consensus        64 ~~g~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~  142 (203)
                      .||+.. -.......+..+|++++|+|+.++.+...  .++....   . +.|+++|+||+|+.+...  .+...++...
T Consensus         7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~---~-~kp~iiVlNK~DL~~~~~--~~~~~~~~~~   78 (287)
T PRK09563          7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKII---G-NKPRLLILNKSDLADPEV--TKKWIEYFEE   78 (287)
T ss_pred             cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh---C-CCCEEEEEEchhcCCHHH--HHHHHHHHHH
Confidence            456432 22234556789999999999987644211  1111111   1 579999999999854311  1222233334


Q ss_pred             cCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccCC-CCCCCCCCccccCCCCCCCCC
Q 028792          143 IGIPFMETSAKSATNVEQAFMAMAASIKNRMASQP-ASNNARPPTVQIRGQPVNQKS  198 (203)
Q Consensus       143 ~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  198 (203)
                      .+.+++.+|++++.|++++...+...+.+...... ........+....+.++.+||
T Consensus        79 ~~~~vi~vSa~~~~gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~G~pnvGKS  135 (287)
T PRK09563         79 QGIKALAINAKKGQGVKKILKAAKKLLKEKNERRKAKGMRPRAIRAMIIGIPNVGKS  135 (287)
T ss_pred             cCCeEEEEECCCcccHHHHHHHHHHHHHHHHhhhhhcccCcCceEEEEECCCCCCHH
Confidence            46778999999999999999998887765432111 111223344555555555544

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=98.54  E-value=1.2e-06  Score=79.21  Aligned_cols=113  Identities=22%  Similarity=0.250  Sum_probs=67.4

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCCCCCCC------ccccceeeEEEEEEECCeEEEEEEEeCCChh--------hhchhhhc
Q 028792           11 LLLIGDSGVGKSCLLLRFADDSYLESY------ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE--------RFRTITSS   76 (203)
Q Consensus        11 i~i~G~~~~GKSsli~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~   76 (203)
                      .+|+|++|+||||+++.- +-.++-..      ....+.+.. ....+.+   +-.++|++|.-        .....|..
T Consensus       114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~-c~wwf~~---~avliDtaG~y~~~~~~~~~~~~~W~~  188 (1169)
T TIGR03348       114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRN-CDWWFTD---EAVLIDTAGRYTTQDSDPEEDAAAWLG  188 (1169)
T ss_pred             EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcc-cceEecC---CEEEEcCCCccccCCCcccccHHHHHH
Confidence            479999999999999976 32332110      111111111 1111222   24599999921        12233544


Q ss_pred             cc---------cCCcEEEEEEeCCCh-----hh----HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 028792           77 YY---------RGAHGIIVVYDVTDQ-----ES----FNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN  128 (203)
Q Consensus        77 ~~---------~~~d~~i~v~d~~~~-----~s----~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~  128 (203)
                      ++         +..|++|+++|+.+-     +.    ...++..++++........|++++++|+|+...
T Consensus       189 fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~G  258 (1169)
T TIGR03348       189 FLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLAG  258 (1169)
T ss_pred             HHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhcC
Confidence            43         458999999998642     21    123445555666555668999999999998754

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=98.54  E-value=2.2e-06  Score=63.60  Aligned_cols=88  Identities=16%  Similarity=0.035  Sum_probs=53.7

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcC--CCCCCCc-cccceeeEEEEEEEC-CeEEEEEEEeCCChhhhch------hhh
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADD--SYLESYI-STIGVDFKIRTVEQD-GKTIKLQIWDTAGQERFRT------ITS   75 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~--~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~------~~~   75 (203)
                      ....-|.|+|++++|||+|+|.|++.  .+..... ...+........... +....+.++||+|......      ...
T Consensus         5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~   84 (224)
T cd01851           5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARL   84 (224)
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHH
Confidence            45677999999999999999999987  5543322 111112222222221 2346799999999543221      122


Q ss_pred             ccccC--CcEEEEEEeCCCh
Q 028792           76 SYYRG--AHGIIVVYDVTDQ   93 (203)
Q Consensus        76 ~~~~~--~d~~i~v~d~~~~   93 (203)
                      ..+..  ++++|+..+....
T Consensus        85 ~~l~~llss~~i~n~~~~~~  104 (224)
T cd01851          85 FALATLLSSVLIYNSWETIL  104 (224)
T ss_pred             HHHHHHHhCEEEEeccCccc
Confidence            22333  8889988887643

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.53  E-value=3e-07  Score=64.30  Aligned_cols=56  Identities=21%  Similarity=0.267  Sum_probs=37.7

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCC-CCCCccccceeeEEEEEEECCeEEEEEEEeCCC
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSY-LESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG   66 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g   66 (203)
                      ....+++++|.||+|||||+|.|.+... .....+..+...  ..+..+   ..+.++||||
T Consensus        98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~--~~~~~~---~~~~liDtPG  154 (155)
T cd01849          98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQ--QEVKLD---NKIKLLDTPG  154 (155)
T ss_pred             ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccce--EEEEec---CCEEEEECCC
Confidence            3568899999999999999999997653 222223333222  233333   2478999998

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.53  E-value=6.8e-06  Score=56.71  Aligned_cols=147  Identities=19%  Similarity=0.262  Sum_probs=80.8

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCC-Chhh--------------h-
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTA-GQER--------------F-   70 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~-g~~~--------------~-   70 (203)
                      ..++|.|.|+||+||||++.++...-....+   .-..+...++.-++..+-|.+.|+. |...              | 
T Consensus         4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~---kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~   80 (179)
T COG1618           4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGY---KVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYG   80 (179)
T ss_pred             cceEEEEeCCCCccHHHHHHHHHHHHHhcCc---eeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEE
Confidence            5689999999999999999998742211111   1123445556666766777788876 3111              0 


Q ss_pred             ----------chhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHH
Q 028792           71 ----------RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFA  140 (203)
Q Consensus        71 ----------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~  140 (203)
                                .......+..+|++|  +|--.+-.+ ....+...+......+.|++.++++.+-.    .   .+.++.
T Consensus        81 V~v~~le~i~~~al~rA~~~aDvII--IDEIGpMEl-ks~~f~~~ve~vl~~~kpliatlHrrsr~----P---~v~~ik  150 (179)
T COG1618          81 VNVEGLEEIAIPALRRALEEADVII--IDEIGPMEL-KSKKFREAVEEVLKSGKPLIATLHRRSRH----P---LVQRIK  150 (179)
T ss_pred             eeHHHHHHHhHHHHHHHhhcCCEEE--Eecccchhh-ccHHHHHHHHHHhcCCCcEEEEEecccCC----h---HHHHhh
Confidence                      011222345566654  454333211 11334445555556678999888877531    1   122222


Q ss_pred             HHcCCCEEEEecCCCCCHHHHHHHHHHHHH
Q 028792          141 DEIGIPFMETSAKSATNVEQAFMAMAASIK  170 (203)
Q Consensus       141 ~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~  170 (203)
                      ...++.++    .+.+|-+.++..+.+.+.
T Consensus       151 ~~~~v~v~----lt~~NR~~i~~~Il~~L~  176 (179)
T COG1618         151 KLGGVYVF----LTPENRNRILNEILSVLK  176 (179)
T ss_pred             hcCCEEEE----EccchhhHHHHHHHHHhc
Confidence            22223333    445555677777776653

>PRK12288 GTPase RsgA; Reviewed

Probab=98.51  E-value=2.9e-07  Score=72.44  Aligned_cols=57  Identities=21%  Similarity=0.238  Sum_probs=36.1

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCCCCC------CCccccceeeEEEEEEECCeEEEEEEEeCCChhhh
Q 028792           11 LLLIGDSGVGKSCLLLRFADDSYLE------SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF   70 (203)
Q Consensus        11 i~i~G~~~~GKSsli~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~   70 (203)
                      ++|+|.+|||||||||+|++.....      .......++.....+..++.   ..++||||...+
T Consensus       208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~  270 (347)
T PRK12288        208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVREF  270 (347)
T ss_pred             EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC---CEEEECCCCCcc
Confidence            7899999999999999999654321      11112223334444444432   248999997653

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.50  E-value=5.3e-07  Score=62.06  Aligned_cols=77  Identities=14%  Similarity=0.191  Sum_probs=52.0

Q ss_pred             hccccCCcEEEEEEeCCChhhHH--HHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEec
Q 028792           75 SSYYRGAHGIIVVYDVTDQESFN--NVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSA  152 (203)
Q Consensus        75 ~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  152 (203)
                      ...+..+|++++|+|+.++.+..  .+..++.   ... .++|+++++||+|+.+...  .....++.+..+..++++||
T Consensus         6 ~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~---~~~-~~k~~iivlNK~DL~~~~~--~~~~~~~~~~~~~~ii~iSa   79 (141)
T cd01857           6 WRVVERSDIVVQIVDARNPLLFRPPDLERYVK---EVD-PRKKNILLLNKADLLTEEQ--RKAWAEYFKKEGIVVVFFSA   79 (141)
T ss_pred             HHHHhhCCEEEEEEEccCCcccCCHHHHHHHH---hcc-CCCcEEEEEechhcCCHHH--HHHHHHHHHhcCCeEEEEEe
Confidence            34568899999999998876432  2333322   221 3689999999999864322  22344555566788999999


Q ss_pred             CCCCC
Q 028792          153 KSATN  157 (203)
Q Consensus       153 ~~~~g  157 (203)
                      .++.+
T Consensus        80 ~~~~~   84 (141)
T cd01857          80 LKENA   84 (141)
T ss_pred             cCCCc
Confidence            98764

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=98.49  E-value=2.2e-06  Score=65.42  Aligned_cols=95  Identities=17%  Similarity=0.148  Sum_probs=56.7

Q ss_pred             EEEEEEeCCChhhhchhhh-------cc-----ccCCcEEEEEEeCCCh-hhHHHHHHHHHHHHhhcCCCCcEEEEEeCC
Q 028792           57 IKLQIWDTAGQERFRTITS-------SY-----YRGAHGIIVVYDVTDQ-ESFNNVKQWLNEIDRYASENVNKLLVGNKC  123 (203)
Q Consensus        57 ~~~~i~D~~g~~~~~~~~~-------~~-----~~~~d~~i~v~d~~~~-~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~  123 (203)
                      +.+.++||||.........       ..     -...|.+++|+|++.. +.+..+..    +....   .+.-+|+||.
T Consensus       155 ~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~----f~~~~---~~~g~IlTKl  227 (272)
T TIGR00064       155 IDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKV----FNEAV---GLTGIILTKL  227 (272)
T ss_pred             CCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHH----HHhhC---CCCEEEEEcc
Confidence            5788999999654322211       11     1248999999999743 23322222    22211   2457789999


Q ss_pred             CCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHH
Q 028792          124 DLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMA  164 (203)
Q Consensus       124 D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  164 (203)
                      |....    .=.+.......+.|+..++  +|++++++-..
T Consensus       228 De~~~----~G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~~~  262 (272)
T TIGR00064       228 DGTAK----GGIILSIAYELKLPIKFIG--VGEKIDDLAPF  262 (272)
T ss_pred             CCCCC----ccHHHHHHHHHCcCEEEEe--CCCChHhCccC
Confidence            96432    2234445556688988887  78888766433

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]

Probab=98.47  E-value=1.3e-06  Score=66.99  Aligned_cols=142  Identities=19%  Similarity=0.177  Sum_probs=90.9

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhc----------------CCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhh
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFAD----------------DSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF   70 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~   70 (203)
                      ...+|.-+|.-.-|||||-.++..                ++-+++...  +.++....+.+.-....+.=.|+||+..|
T Consensus        53 PHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaR--GITIn~aHveYeTa~RhYaH~DCPGHADY  130 (449)
T KOG0460|consen   53 PHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKAR--GITINAAHVEYETAKRHYAHTDCPGHADY  130 (449)
T ss_pred             CcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhc--cceEeeeeeeeeccccccccCCCCchHHH
Confidence            347888899999999999888742                111222222  33444545555444455567799999988


Q ss_pred             chhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc---cCHHHHHHHHHHcC---
Q 028792           71 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKV---VSYETAKAFADEIG---  144 (203)
Q Consensus        71 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~---~~~~~~~~~~~~~~---  144 (203)
                      -.....-..+.|+.|+|+.++|..-- ..++.+-..+...  -..+++++||.|+.++.+   +-+.+++++...++   
T Consensus       131 IKNMItGaaqMDGaILVVaatDG~MP-QTrEHlLLArQVG--V~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~G  207 (449)
T KOG0460|consen  131 IKNMITGAAQMDGAILVVAATDGPMP-QTREHLLLARQVG--VKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDG  207 (449)
T ss_pred             HHHhhcCccccCceEEEEEcCCCCCc-chHHHHHHHHHcC--CceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCC
Confidence            77777777889999999999985431 1122221122221  245677789999985433   22345677777764   


Q ss_pred             --CCEEEEecC
Q 028792          145 --IPFMETSAK  153 (203)
Q Consensus       145 --~~~~~~Sa~  153 (203)
                        +|++.-||.
T Consensus       208 d~~PvI~GSAL  218 (449)
T KOG0460|consen  208 DNTPVIRGSAL  218 (449)
T ss_pred             CCCCeeecchh
Confidence              689887755

>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.46  E-value=7e-07  Score=73.13  Aligned_cols=115  Identities=19%  Similarity=0.200  Sum_probs=75.5

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCC-----CC-------------CCCccccceeeEEEEEEECCeEEEEEEEeCCChh
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFADDS-----YL-------------ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE   68 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~~~-----~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~   68 (203)
                      +.-+|.++-.-.+||||+-++.+.-.     +.             ......++.......+.+.  +++++++||||+-
T Consensus        38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~--~~~iNiIDTPGHv  115 (721)
T KOG0465|consen   38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWR--DYRINIIDTPGHV  115 (721)
T ss_pred             hhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeec--cceeEEecCCCce
Confidence            44578888888999999999876311     00             0111122222222233343  5889999999998


Q ss_pred             hhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028792           69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTA  127 (203)
Q Consensus        69 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~  127 (203)
                      .|.-.....+.-.|+.|+++|+...-.-.....|++ +.++   +.|.+.++||+|-..
T Consensus       116 DFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ-~~ry---~vP~i~FiNKmDRmG  170 (721)
T KOG0465|consen  116 DFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQ-MKRY---NVPRICFINKMDRMG  170 (721)
T ss_pred             eEEEEehhhhhhccCeEEEEEcccceehhhHHHHHH-HHhc---CCCeEEEEehhhhcC
Confidence            888778888899999999999875432122233433 3333   689999999999653

>cd03112 CobW_like The function of this protein family is unkown

Probab=98.46  E-value=1.5e-06  Score=60.98  Aligned_cols=21  Identities=33%  Similarity=0.469  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 028792           11 LLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        11 i~i~G~~~~GKSsli~~l~~~   31 (203)
                      ++++|+.|+|||||+++++..
T Consensus         3 ~~l~G~~GsGKTtl~~~l~~~   23 (158)
T cd03112           3 TVLTGFLGAGKTTLLNHILTE   23 (158)
T ss_pred             EEEEECCCCCHHHHHHHHHhc
Confidence            679999999999999999854

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.44  E-value=3.9e-07  Score=69.29  Aligned_cols=57  Identities=26%  Similarity=0.284  Sum_probs=39.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC------CCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhh
Q 028792           10 KLLLIGDSGVGKSCLLLRFADD------SYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER   69 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~   69 (203)
                      -.+++|++|+|||||+|+|...      ..+........++.....+..+++..   ++||||...
T Consensus       166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG~---iiDTPGf~~  228 (301)
T COG1162         166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGGW---IIDTPGFRS  228 (301)
T ss_pred             eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCCE---EEeCCCCCc
Confidence            4689999999999999999852      23333334445556666666643323   889999755

>PRK13796 GTPase YqeH; Provisional

Probab=98.43  E-value=2.6e-06  Score=67.76  Aligned_cols=92  Identities=25%  Similarity=0.410  Sum_probs=60.6

Q ss_pred             hhchhhhccccCCc-EEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHH----HHHHHc
Q 028792           69 RFRTITSSYYRGAH-GIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAK----AFADEI  143 (203)
Q Consensus        69 ~~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~----~~~~~~  143 (203)
                      .+....... ...+ .+++|+|+.|...     .|...+..... +.|+++|+||+|+... ....+.+.    .+++..
T Consensus        58 ~~~~~l~~i-~~~~~lIv~VVD~~D~~~-----s~~~~L~~~~~-~kpviLViNK~DLl~~-~~~~~~i~~~l~~~~k~~  129 (365)
T PRK13796         58 DFLKLLNGI-GDSDALVVNVVDIFDFNG-----SWIPGLHRFVG-NNPVLLVGNKADLLPK-SVKKNKVKNWLRQEAKEL  129 (365)
T ss_pred             HHHHHHHhh-cccCcEEEEEEECccCCC-----chhHHHHHHhC-CCCEEEEEEchhhCCC-ccCHHHHHHHHHHHHHhc
Confidence            344433333 4444 9999999987442     23444444333 5799999999999653 22233333    335555


Q ss_pred             CC---CEEEEecCCCCCHHHHHHHHHHH
Q 028792          144 GI---PFMETSAKSATNVEQAFMAMAAS  168 (203)
Q Consensus       144 ~~---~~~~~Sa~~~~gi~~~~~~l~~~  168 (203)
                      ++   .++.+||+++.|++++++.|.+.
T Consensus       130 g~~~~~v~~vSAk~g~gI~eL~~~I~~~  157 (365)
T PRK13796        130 GLRPVDVVLISAQKGHGIDELLEAIEKY  157 (365)
T ss_pred             CCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence            65   68999999999999999998654

>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]

Probab=98.42  E-value=8.5e-07  Score=74.25  Aligned_cols=115  Identities=22%  Similarity=0.292  Sum_probs=78.6

Q ss_pred             CCCceeeEEEEEcCCCCcHHHHHHHHhcCC--CC----------CCC--ccccceeeEEEEEEECCeEEEEEEEeCCChh
Q 028792            3 NEYDYLFKLLLIGDSGVGKSCLLLRFADDS--YL----------ESY--ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE   68 (203)
Q Consensus         3 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~--~~----------~~~--~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~   68 (203)
                      ++.+..-+|+++..-.-|||||+..|+...  .+          ...  ..+.+.+.....+..-.+++.++++|+||+-
T Consensus         4 ~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghv   83 (887)
T KOG0467|consen    4 KGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHV   83 (887)
T ss_pred             CCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCcc
Confidence            455667789999999999999999997322  11          111  1122222222233343455889999999999


Q ss_pred             hhchhhhccccCCcEEEEEEeCCCh---hhHHHHHHHHHHHHhhcCCCCcEEEEEeCCC
Q 028792           69 RFRTITSSYYRGAHGIIVVYDVTDQ---ESFNNVKQWLNEIDRYASENVNKLLVGNKCD  124 (203)
Q Consensus        69 ~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D  124 (203)
                      .|.+.......-+|++++++|+...   +++.-+++   .+.    .+...++|+||+|
T Consensus        84 df~sevssas~l~d~alvlvdvvegv~~qt~~vlrq---~~~----~~~~~~lvinkid  135 (887)
T KOG0467|consen   84 DFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQ---AWI----EGLKPILVINKID  135 (887)
T ss_pred             chhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHH---HHH----ccCceEEEEehhh
Confidence            9999998888999999999999754   34333333   221    2456688999999

>KOG4273 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.41  E-value=6.6e-06  Score=60.76  Aligned_cols=160  Identities=21%  Similarity=0.289  Sum_probs=99.7

Q ss_pred             eEEEEEcCCCC--cHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEE
Q 028792            9 FKLLLIGDSGV--GKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV   86 (203)
Q Consensus         9 ~~i~i~G~~~~--GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (203)
                      .-++|+|..|+  ||.+|+.+|....+.....+...+++..+++...-....+.+.-.+--+++.-..........++++
T Consensus         5 p~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishicde~~lpn~~~a~pl~a~vm   84 (418)
T KOG4273|consen    5 PCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHICDEKFLPNAEIAEPLQAFVM   84 (418)
T ss_pred             ceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeecccchhccCCcccccceeeEEE
Confidence            45789999999  9999999999888776666665556665555332222233333222212221112223345678999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc-------------------------------------
Q 028792           87 VYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANK-------------------------------------  129 (203)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~-------------------------------------  129 (203)
                      |||.+....+..++.|+.--.-..  ---++.++||.|-....                                     
T Consensus        85 vfdlse~s~l~alqdwl~htdins--fdillcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgisetegssl  162 (418)
T KOG4273|consen   85 VFDLSEKSGLDALQDWLPHTDINS--FDILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISETEGSSL  162 (418)
T ss_pred             EEeccchhhhHHHHhhcccccccc--chhheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhccccccccccc
Confidence            999999989988998875321111  12235568898864320                                     


Q ss_pred             -------ccCHHHHHHHHHHcCCCEEEEecCC------------CCCHHHHHHHHHHHHH
Q 028792          130 -------VVSYETAKAFADEIGIPFMETSAKS------------ATNVEQAFMAMAASIK  170 (203)
Q Consensus       130 -------~~~~~~~~~~~~~~~~~~~~~Sa~~------------~~gi~~~~~~l~~~~~  170 (203)
                             ........+|+..+++.+++.++.+            ..|+..+|..|...++
T Consensus       163 lgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~ahmw  222 (418)
T KOG4273|consen  163 LGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNAHMW  222 (418)
T ss_pred             cccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhhccC
Confidence                   0111234578888899999988742            3478888887766544

>PRK14974 cell division protein FtsY; Provisional

Probab=98.41  E-value=6.5e-07  Score=70.03  Aligned_cols=95  Identities=17%  Similarity=0.143  Sum_probs=55.9

Q ss_pred             EEEEEEeCCChhhhchh----hhcc--ccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc
Q 028792           57 IKLQIWDTAGQERFRTI----TSSY--YRGAHGIIVVYDVTDQE-SFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANK  129 (203)
Q Consensus        57 ~~~~i~D~~g~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~  129 (203)
                      ..+.++||+|.......    ...+  ....|.+++|+|+...+ ....+..    +....   ..--+++||.|....-
T Consensus       223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~----f~~~~---~~~giIlTKlD~~~~~  295 (336)
T PRK14974        223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQARE----FNEAV---GIDGVILTKVDADAKG  295 (336)
T ss_pred             CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHH----HHhcC---CCCEEEEeeecCCCCc
Confidence            45889999996432111    1111  23578899999987543 2222222    21111   2346789999975321


Q ss_pred             ccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHH
Q 028792          130 VVSYETAKAFADEIGIPFMETSAKSATNVEQAFMA  164 (203)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  164 (203)
                          =.+...+...+.|+..++  +|++++++..+
T Consensus       296 ----G~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~~~  324 (336)
T PRK14974        296 ----GAALSIAYVIGKPILFLG--VGQGYDDLIPF  324 (336)
T ss_pred             ----cHHHHHHHHHCcCEEEEe--CCCChhhcccC
Confidence                223444556688988887  78999876543

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.40  E-value=6.8e-07  Score=67.24  Aligned_cols=56  Identities=23%  Similarity=0.214  Sum_probs=35.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCC------CCCccccceeeEEEEEEECCeEEEEEEEeCCChhh
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDSYL------ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER   69 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~   69 (203)
                      .++++|++|+|||||+|+|.+....      ........++.....+...+.    .++||||...
T Consensus       122 ~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~~----~liDtPG~~~  183 (245)
T TIGR00157       122 ISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHGG----LIADTPGFNE  183 (245)
T ss_pred             EEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCCc----EEEeCCCccc
Confidence            6789999999999999999965322      111111222333333444332    5999999643

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>PRK01889 GTPase RsgA; Reviewed

Probab=98.38  E-value=2.7e-06  Score=67.45  Aligned_cols=84  Identities=13%  Similarity=0.220  Sum_probs=56.3

Q ss_pred             cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-HcCCCEEEEecCCC
Q 028792           77 YYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFAD-EIGIPFMETSAKSA  155 (203)
Q Consensus        77 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~  155 (203)
                      +..++|.+++|+++..+-....+..++..+..   .+.+.+||+||+|+.+...   +....+.. ..+.+++.+|++++
T Consensus       109 iaANvD~vliV~s~~p~~~~~~ldr~L~~a~~---~~i~piIVLNK~DL~~~~~---~~~~~~~~~~~g~~Vi~vSa~~g  182 (356)
T PRK01889        109 IAANVDTVFIVCSLNHDFNLRRIERYLALAWE---SGAEPVIVLTKADLCEDAE---EKIAEVEALAPGVPVLAVSALDG  182 (356)
T ss_pred             EEEeCCEEEEEEecCCCCChhHHHHHHHHHHH---cCCCEEEEEEChhcCCCHH---HHHHHHHHhCCCCcEEEEECCCC
Confidence            46889999999999643333333344333333   3577789999999975411   11222222 34678999999999


Q ss_pred             CCHHHHHHHHH
Q 028792          156 TNVEQAFMAMA  166 (203)
Q Consensus       156 ~gi~~~~~~l~  166 (203)
                      .|++++..+|.
T Consensus       183 ~gl~~L~~~L~  193 (356)
T PRK01889        183 EGLDVLAAWLS  193 (356)
T ss_pred             ccHHHHHHHhh
Confidence            99999988873

>PRK12289 GTPase RsgA; Reviewed

Probab=98.36  E-value=9.1e-07  Score=69.73  Aligned_cols=56  Identities=27%  Similarity=0.283  Sum_probs=35.3

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCCCCC------CCccccceeeEEEEEEECCeEEEEEEEeCCChhh
Q 028792           11 LLLIGDSGVGKSCLLLRFADDSYLE------SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER   69 (203)
Q Consensus        11 i~i~G~~~~GKSsli~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~   69 (203)
                      ++|+|++|+|||||||+|+......      .......++.....+...++.   .++||||...
T Consensus       175 ~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~~~  236 (352)
T PRK12289        175 TVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNGG---LLADTPGFNQ  236 (352)
T ss_pred             EEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCCc---EEEeCCCccc
Confidence            7999999999999999999654321      111111233334444443322   5899999643

>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]

Probab=98.36  E-value=3.5e-05  Score=62.95  Aligned_cols=106  Identities=13%  Similarity=0.221  Sum_probs=64.3

Q ss_pred             EEEEEeCCChhh-------------hchhhhccccCCcEEEEEEeCCChhh-HHHHHHHHHHHHhhcCCCCcEEEEEeCC
Q 028792           58 KLQIWDTAGQER-------------FRTITSSYYRGAHGIIVVYDVTDQES-FNNVKQWLNEIDRYASENVNKLLVGNKC  123 (203)
Q Consensus        58 ~~~i~D~~g~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~l~~~~~~~~p~iiv~nK~  123 (203)
                      +..+.|.||...             ...+...+..+.+++|+|+---+-+. -..+..+   +...-+.+...|+|.+|.
T Consensus       413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAERSnVTDL---Vsq~DP~GrRTIfVLTKV  489 (980)
T KOG0447|consen  413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAERSIVTDL---VSQMDPHGRRTIFVLTKV  489 (980)
T ss_pred             eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchhhhhHHHH---HHhcCCCCCeeEEEEeec
Confidence            578999999321             23345677899999999985322211 1112222   334445688899999999


Q ss_pred             CCCCCcccCHHHHHHHHHHcC-----CCEEEEecCCCCCHHHHHHHHHH
Q 028792          124 DLTANKVVSYETAKAFADEIG-----IPFMETSAKSATNVEQAFMAMAA  167 (203)
Q Consensus       124 D~~~~~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~~~~~l~~  167 (203)
                      |+.+.+..+...+..+..-.-     ..||.+-.-.|. -++..+.|.+
T Consensus       490 DlAEknlA~PdRI~kIleGKLFPMKALGYfaVVTGrGn-ssdSIdaIR~  537 (980)
T KOG0447|consen  490 DLAEKNVASPSRIQQIIEGKLFPMKALGYFAVVTGKGN-SSESIEAIRE  537 (980)
T ss_pred             chhhhccCCHHHHHHHHhcCccchhhcceeEEEecCCC-cchhHHHHHH
Confidence            999887777787777654321     235555443332 2344444443

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=98.33  E-value=4.7e-06  Score=67.01  Aligned_cols=123  Identities=19%  Similarity=0.192  Sum_probs=83.4

Q ss_pred             eEEEEEEE-CCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCCh----------hhHHHHHHHHHHHHhhcC-C
Q 028792           45 FKIRTVEQ-DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQ----------ESFNNVKQWLNEIDRYAS-E  112 (203)
Q Consensus        45 ~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~l~~~~~-~  112 (203)
                      +....+.+ .+  ..+.++|++|+...+..|..++.+++++|||+++++-          ..+.+...++..+..... .
T Consensus       225 i~e~~f~~~~~--~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~  302 (389)
T PF00503_consen  225 ITEIDFNFSGS--RKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFK  302 (389)
T ss_dssp             EEEEEEEE-TT--EEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGT
T ss_pred             eeEEEEEeecc--cccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccc
Confidence            44444555 44  7789999999998899999999999999999998632          234454555555543322 4


Q ss_pred             CCcEEEEEeCCCCCCC----------------cc--cCHHHHHHHHHHc------------CCCEEEEecCCCCCHHHHH
Q 028792          113 NVNKLLVGNKCDLTAN----------------KV--VSYETAKAFADEI------------GIPFMETSAKSATNVEQAF  162 (203)
Q Consensus       113 ~~p~iiv~nK~D~~~~----------------~~--~~~~~~~~~~~~~------------~~~~~~~Sa~~~~gi~~~~  162 (203)
                      +.|++|++||.|+...                ..  -..+.+..|....            .+.+..++|.+.+.+..+|
T Consensus       303 ~~~iil~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~  382 (389)
T PF00503_consen  303 NTPIILFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVF  382 (389)
T ss_dssp             TSEEEEEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHH
T ss_pred             cCceEEeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHH
Confidence            7899999999996321                01  2345555444322            1245678888888999998


Q ss_pred             HHHHHHH
Q 028792          163 MAMAASI  169 (203)
Q Consensus       163 ~~l~~~~  169 (203)
                      ..+.+.+
T Consensus       383 ~~v~~~i  389 (389)
T PF00503_consen  383 NAVKDII  389 (389)
T ss_dssp             HHHHHHH
T ss_pred             HHhcCcC
Confidence            8887653

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.30  E-value=1.1e-06  Score=66.61  Aligned_cols=111  Identities=14%  Similarity=0.173  Sum_probs=71.1

Q ss_pred             EEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc--CHHH
Q 028792           58 KLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVV--SYET  135 (203)
Q Consensus        58 ~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~--~~~~  135 (203)
                      .+.+.|+||++-.......-..-.|++++++..+....-....+.+..+.-+.  -+.++++-||.|+....+.  ..+.
T Consensus       126 HVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~--LkhiiilQNKiDli~e~~A~eq~e~  203 (466)
T KOG0466|consen  126 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMK--LKHIIILQNKIDLIKESQALEQHEQ  203 (466)
T ss_pred             EEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhh--hceEEEEechhhhhhHHHHHHHHHH
Confidence            46788999987654433333344688888888774321111122222222221  2467888999999765332  2344


Q ss_pred             HHHHHHHc---CCCEEEEecCCCCCHHHHHHHHHHHHH
Q 028792          136 AKAFADEI---GIPFMETSAKSATNVEQAFMAMAASIK  170 (203)
Q Consensus       136 ~~~~~~~~---~~~~~~~Sa~~~~gi~~~~~~l~~~~~  170 (203)
                      +..|....   ++|++++||.-+.+++-+.+.+.+.+-
T Consensus       204 I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIP  241 (466)
T KOG0466|consen  204 IQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIP  241 (466)
T ss_pred             HHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCC
Confidence            55555543   579999999999999999999988764

>PRK13796 GTPase YqeH; Provisional

Probab=98.27  E-value=1.6e-06  Score=69.03  Aligned_cols=57  Identities=23%  Similarity=0.268  Sum_probs=36.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCC----CCccccceeeEEEEEEECCeEEEEEEEeCCChh
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDSYLE----SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE   68 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~   68 (203)
                      -+++++|.+|||||||||+|+......    ...+..+++.....+..++.   ..++||||..
T Consensus       161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi~  221 (365)
T PRK13796        161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGII  221 (365)
T ss_pred             CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCcc
Confidence            378999999999999999998543111    01112233334444444432   3699999964

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.27  E-value=2e-06  Score=68.34  Aligned_cols=58  Identities=19%  Similarity=0.312  Sum_probs=36.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCC----CCccccceeeEEEEEEECCeEEEEEEEeCCChhh
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDSYLE----SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER   69 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~   69 (203)
                      .+++++|.+|+|||||+|+|+......    ...+..+++.....+..++   .+.++||||...
T Consensus       155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~---~~~l~DtPG~~~  216 (360)
T TIGR03597       155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDD---GHSLYDTPGIIN  216 (360)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCC---CCEEEECCCCCC
Confidence            479999999999999999999743210    1111223333344444432   246999999643

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=98.27  E-value=1.1e-06  Score=70.79  Aligned_cols=56  Identities=20%  Similarity=0.229  Sum_probs=40.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCh
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ   67 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~   67 (203)
                      .+.|.+||.|||||||+||+|.+.+.-.. ..|.+-+....++.+..   .+.++|+||.
T Consensus       314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsV-S~TPGkTKHFQTi~ls~---~v~LCDCPGL  369 (562)
T KOG1424|consen  314 VVTVGFVGYPNVGKSSTINALVGRKKVSV-SSTPGKTKHFQTIFLSP---SVCLCDCPGL  369 (562)
T ss_pred             eeEEEeecCCCCchhHHHHHHhcCceeee-ecCCCCcceeEEEEcCC---CceecCCCCc
Confidence            69999999999999999999998764332 23333334444554443   3679999993

>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.25  E-value=5.8e-06  Score=61.91  Aligned_cols=119  Identities=19%  Similarity=0.302  Sum_probs=71.9

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC----ccccceeeEEEEEEECCeEEEEEEEeCCChh-------hhchh-
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESY----ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE-------RFRTI-   73 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~-------~~~~~-   73 (203)
                      ...|+|+.+|..|.|||||+..|++..+....    .+.+........+.-.+..+++++.||.|..       .|... 
T Consensus        40 GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iV  119 (406)
T KOG3859|consen   40 GFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIV  119 (406)
T ss_pred             CceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHH
Confidence            46799999999999999999999987765433    3344444444444445666889999999821       11111 


Q ss_pred             ---------------------hhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 028792           74 ---------------------TSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN  128 (203)
Q Consensus        74 ---------------------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~  128 (203)
                                           ....-...+++++.+..+.. ++..+..   ...+.......+|-++-|.|....
T Consensus       120 dyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH-~LKslDL---vtmk~LdskVNIIPvIAKaDtisK  191 (406)
T KOG3859|consen  120 DYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGH-SLKSLDL---VTMKKLDSKVNIIPVIAKADTISK  191 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCc-chhHHHH---HHHHHHhhhhhhHHHHHHhhhhhH
Confidence                                 11112446788888887653 3222222   111122234556667778886544

>PRK13695 putative NTPase; Provisional

Probab=98.23  E-value=4.3e-05  Score=54.48  Aligned_cols=80  Identities=6%  Similarity=0.099  Sum_probs=43.9

Q ss_pred             cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCC
Q 028792           77 YYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSAT  156 (203)
Q Consensus        77 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  156 (203)
                      .+..+++  +++|--.+..... ..+.+.+......+.|++++.||...       .....++....+..++.+   +.+
T Consensus        93 ~l~~~~~--lllDE~~~~e~~~-~~~~~~l~~~~~~~~~~i~v~h~~~~-------~~~~~~i~~~~~~~i~~~---~~~  159 (174)
T PRK13695         93 ALEEADV--IIIDEIGKMELKS-PKFVKAVEEVLDSEKPVIATLHRRSV-------HPFVQEIKSRPGGRVYEL---TPE  159 (174)
T ss_pred             ccCCCCE--EEEECCCcchhhh-HHHHHHHHHHHhCCCeEEEEECchhh-------HHHHHHHhccCCcEEEEE---cch
Confidence            3455666  6777321111111 22344444444457899999998532       122344445555667766   456


Q ss_pred             CHHHHHHHHHHHH
Q 028792          157 NVEQAFMAMAASI  169 (203)
Q Consensus       157 gi~~~~~~l~~~~  169 (203)
                      +-+++...+.+.+
T Consensus       160 ~r~~~~~~~~~~~  172 (174)
T PRK13695        160 NRDSLPFEILNRL  172 (174)
T ss_pred             hhhhHHHHHHHHH
Confidence            6678877777755

>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]

Probab=98.20  E-value=3.6e-06  Score=66.02  Aligned_cols=156  Identities=18%  Similarity=0.138  Sum_probs=96.2

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCC-------------------------------CCCCCccccceeeEEEEEEECC
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDS-------------------------------YLESYISTIGVDFKIRTVEQDG   54 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~   54 (203)
                      -..++++|+|.-.+||||+-..++...                               -........+.+.....+....
T Consensus        77 k~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte~  156 (501)
T KOG0459|consen   77 KEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETEN  156 (501)
T ss_pred             CCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEecc
Confidence            456899999999999999876654210                               0111111223333333444433


Q ss_pred             eEEEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChh---hHHHHHHHHHH-HHhhcCCCCcEEEEEeCCCCCCCc-
Q 028792           55 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQE---SFNNVKQWLNE-IDRYASENVNKLLVGNKCDLTANK-  129 (203)
Q Consensus        55 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~-l~~~~~~~~p~iiv~nK~D~~~~~-  129 (203)
                        .++++.|+||+..|-...-.-..++|+.++|+++...+   .|+..-+.+.. +......-..+|+++||+|-...+ 
T Consensus       157 --~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnW  234 (501)
T KOG0459|consen  157 --KRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNW  234 (501)
T ss_pred             --eeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCc
Confidence              57899999999888777767778899999999985321   23333222222 222222346778999999965321 


Q ss_pred             -ccCH----HHHHHHHHHcC------CCEEEEecCCCCCHHHHHH
Q 028792          130 -VVSY----ETAKAFADEIG------IPFMETSAKSATNVEQAFM  163 (203)
Q Consensus       130 -~~~~----~~~~~~~~~~~------~~~~~~Sa~~~~gi~~~~~  163 (203)
                       ....    +.+..|....+      ..++++|..+|.++.+...
T Consensus       235 s~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~  279 (501)
T KOG0459|consen  235 SNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD  279 (501)
T ss_pred             chhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence             1112    22334444332      5699999999999988765

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=98.15  E-value=2.7e-05  Score=62.80  Aligned_cols=84  Identities=15%  Similarity=0.048  Sum_probs=44.5

Q ss_pred             EEEEEEeCCChhhhchhh----hcc--ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc
Q 028792           57 IKLQIWDTAGQERFRTIT----SSY--YRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKV  130 (203)
Q Consensus        57 ~~~~i~D~~g~~~~~~~~----~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~  130 (203)
                      +.+.|+||+|........    ..+  ....|.++||+|++-.+.-..   ....+...   -.+.-+|+||.|-...- 
T Consensus       183 ~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~---~a~~F~~~---~~~~g~IlTKlD~~arg-  255 (429)
T TIGR01425       183 FDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEA---QAKAFKDS---VDVGSVIITKLDGHAKG-  255 (429)
T ss_pred             CCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHH---HHHHHHhc---cCCcEEEEECccCCCCc-
Confidence            678999999954332211    111  235688999999875432211   11222211   23557889999964321 


Q ss_pred             cCHHHHHHHHHHcCCCEEEE
Q 028792          131 VSYETAKAFADEIGIPFMET  150 (203)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~  150 (203)
                         =.+.......+.|+..+
T Consensus       256 ---G~aLs~~~~t~~PI~fi  272 (429)
T TIGR01425       256 ---GGALSAVAATKSPIIFI  272 (429)
T ss_pred             ---cHHhhhHHHHCCCeEEE
Confidence               11233344455555444

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>PRK11537 putative GTP-binding protein YjiA; Provisional

Probab=98.15  E-value=3e-05  Score=60.56  Aligned_cols=85  Identities=12%  Similarity=0.191  Sum_probs=45.7

Q ss_pred             EEEEEEeCCChhhhchhhhcccc--------CCcEEEEEEeCCChhhHH-HHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028792           57 IKLQIWDTAGQERFRTITSSYYR--------GAHGIIVVYDVTDQESFN-NVKQWLNEIDRYASENVNKLLVGNKCDLTA  127 (203)
Q Consensus        57 ~~~~i~D~~g~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~s~~-~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~  127 (203)
                      ....++++.|..........++.        ..+.+|.|+|+.+-.... .......++..      .-+|++||.|+..
T Consensus        91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~------AD~IvlnK~Dl~~  164 (318)
T PRK11537         91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGY------ADRILLTKTDVAG  164 (318)
T ss_pred             CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHh------CCEEEEeccccCC
Confidence            34567788886544443333321        257899999986432211 11111222221      1288999999876


Q ss_pred             CcccCHHHHHHHHHHcC--CCEEEEe
Q 028792          128 NKVVSYETAKAFADEIG--IPFMETS  151 (203)
Q Consensus       128 ~~~~~~~~~~~~~~~~~--~~~~~~S  151 (203)
                      ..    +.+.+..+..+  ++++.++
T Consensus       165 ~~----~~~~~~l~~lnp~a~i~~~~  186 (318)
T PRK11537        165 EA----EKLRERLARINARAPVYTVV  186 (318)
T ss_pred             HH----HHHHHHHHHhCCCCEEEEec
Confidence            32    44555555544  5666554

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.14  E-value=4.7e-05  Score=60.41  Aligned_cols=139  Identities=15%  Similarity=0.129  Sum_probs=70.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCC---CCCCccccceee------------------EEEEEEE---------CCeEEE
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDSY---LESYISTIGVDF------------------KIRTVEQ---------DGKTIK   58 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~~---~~~~~~~~~~~~------------------~~~~~~~---------~~~~~~   58 (203)
                      -.++++|++|+||||++.+|.....   .....-.++.+.                  ....+..         .-....
T Consensus       138 ~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~D  217 (374)
T PRK14722        138 GVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNKH  217 (374)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCCC
Confidence            4688999999999999999974311   000000000000                  0011100         011246


Q ss_pred             EEEEeCCChhhhchh----hhcc--ccCCcEEEEEEeCCC-hhhHHHHHHHHHHHHhhcCC--CCcEEEEEeCCCCCCCc
Q 028792           59 LQIWDTAGQERFRTI----TSSY--YRGAHGIIVVYDVTD-QESFNNVKQWLNEIDRYASE--NVNKLLVGNKCDLTANK  129 (203)
Q Consensus        59 ~~i~D~~g~~~~~~~----~~~~--~~~~d~~i~v~d~~~-~~s~~~~~~~~~~l~~~~~~--~~p~iiv~nK~D~~~~~  129 (203)
                      +.++||+|.......    ...+  .....-.++|++++. .+.+.++...+.........  ...--+|++|.|-..  
T Consensus       218 lVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~--  295 (374)
T PRK14722        218 MVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEAS--  295 (374)
T ss_pred             EEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCC--
Confidence            889999996533222    1111  123445688999875 34444433322222111000  012356789999542  


Q ss_pred             ccCHHHHHHHHHHcCCCEEEEe
Q 028792          130 VVSYETAKAFADEIGIPFMETS  151 (203)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~S  151 (203)
                        ..=.+..+....+.|+..++
T Consensus       296 --~~G~~l~~~~~~~lPi~yvt  315 (374)
T PRK14722        296 --NLGGVLDTVIRYKLPVHYVS  315 (374)
T ss_pred             --CccHHHHHHHHHCcCeEEEe
Confidence              23345566666677765554

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.13  E-value=3.3e-05  Score=59.00  Aligned_cols=94  Identities=19%  Similarity=0.254  Sum_probs=66.2

Q ss_pred             chhhhccccCCcEEEEEEeCCChhh-HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEE
Q 028792           71 RTITSSYYRGAHGIIVVYDVTDQES-FNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFME  149 (203)
Q Consensus        71 ~~~~~~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  149 (203)
                      ..+.+.-..+.|-+++|+.+.+|+- ..-+..++-...   ..+...+|++||+|+.+......++........+.+++.
T Consensus        70 n~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae---~~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~  146 (301)
T COG1162          70 NVLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAE---AGGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLF  146 (301)
T ss_pred             CceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHH---HcCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEE
Confidence            3445555677888899999888763 322333332222   235666788999999876554434566677788999999


Q ss_pred             EecCCCCCHHHHHHHHHH
Q 028792          150 TSAKSATNVEQAFMAMAA  167 (203)
Q Consensus       150 ~Sa~~~~gi~~~~~~l~~  167 (203)
                      +|+++++|++++...+..
T Consensus       147 ~s~~~~~~~~~l~~~l~~  164 (301)
T COG1162         147 VSAKNGDGLEELAELLAG  164 (301)
T ss_pred             ecCcCcccHHHHHHHhcC
Confidence            999999999999988754

>PRK00098 GTPase RsgA; Reviewed

Probab=98.13  E-value=6.7e-06  Score=63.71  Aligned_cols=57  Identities=33%  Similarity=0.345  Sum_probs=35.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCC-Ccc-----ccceeeEEEEEEECCeEEEEEEEeCCChhh
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDSYLES-YIS-----TIGVDFKIRTVEQDGKTIKLQIWDTAGQER   69 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~   69 (203)
                      .++++|++|+|||||+|.|.+...... ..+     ...++.....+..++.   ..++|+||...
T Consensus       166 ~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~---~~~~DtpG~~~  228 (298)
T PRK00098        166 VTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGG---GLLIDTPGFSS  228 (298)
T ss_pred             eEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCC---cEEEECCCcCc
Confidence            588999999999999999987543221 111     1112233344444432   35899999643

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=98.13  E-value=3.2e-05  Score=56.16  Aligned_cols=84  Identities=19%  Similarity=0.185  Sum_probs=46.7

Q ss_pred             EEEEEEeCCChhhhch----hhhccc--cCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc
Q 028792           57 IKLQIWDTAGQERFRT----ITSSYY--RGAHGIIVVYDVTDQE-SFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANK  129 (203)
Q Consensus        57 ~~~~i~D~~g~~~~~~----~~~~~~--~~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~  129 (203)
                      ..+.++||+|......    ....++  ...+-+++|++++... .+..+..++.   ..    .+--++++|.|-..  
T Consensus        84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~---~~----~~~~lIlTKlDet~--  154 (196)
T PF00448_consen   84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYE---AF----GIDGLILTKLDETA--  154 (196)
T ss_dssp             SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHH---HS----STCEEEEESTTSSS--
T ss_pred             CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhh---cc----cCceEEEEeecCCC--
Confidence            4588999999543221    111111  2577899999998644 3332222221   11    12256799999532  


Q ss_pred             ccCHHHHHHHHHHcCCCEEEEe
Q 028792          130 VVSYETAKAFADEIGIPFMETS  151 (203)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~S  151 (203)
                        ..-.+..+....+.|+-.++
T Consensus       155 --~~G~~l~~~~~~~~Pi~~it  174 (196)
T PF00448_consen  155 --RLGALLSLAYESGLPISYIT  174 (196)
T ss_dssp             --TTHHHHHHHHHHTSEEEEEE
T ss_pred             --CcccceeHHHHhCCCeEEEE
Confidence              23445666677787766655

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.13  E-value=1.5e-05  Score=71.11  Aligned_cols=115  Identities=23%  Similarity=0.228  Sum_probs=64.6

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCCCCCC-Cc--cccceeeEEEEEEECCeEEEEEEEeCCChh--------hhchhhhcc--
Q 028792           11 LLLIGDSGVGKSCLLLRFADDSYLES-YI--STIGVDFKIRTVEQDGKTIKLQIWDTAGQE--------RFRTITSSY--   77 (203)
Q Consensus        11 i~i~G~~~~GKSsli~~l~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~~--   77 (203)
                      -+|||+||+||||++..--.+..... ..  ...........-...+   .-.++||.|.-        .-...|..+  
T Consensus       128 y~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~~gT~~cdwwf~d---eaVlIDtaGry~~q~s~~~~~~~~W~~fL~  204 (1188)
T COG3523         128 YMVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGPGTRNCDWWFTD---EAVLIDTAGRYITQDSADEVDRAEWLGFLG  204 (1188)
T ss_pred             eEEecCCCCCcchHHhcccccCcchhhhccccccCCCCcccCccccc---ceEEEcCCcceecccCcchhhHHHHHHHHH
Confidence            47899999999999875432211111 00  0000000001111122   34588988821        223344444  


Q ss_pred             -------ccCCcEEEEEEeCCC-----hhh----HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 028792           78 -------YRGAHGIIVVYDVTD-----QES----FNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN  128 (203)
Q Consensus        78 -------~~~~d~~i~v~d~~~-----~~s----~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~  128 (203)
                             .+..|++|+.+|+.+     +..    ...++.-++++.....-..|+++++||.|+...
T Consensus       205 lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~G  271 (1188)
T COG3523         205 LLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLPG  271 (1188)
T ss_pred             HHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEeccccccc
Confidence                   366899999999863     211    122344455565555567999999999998764

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=98.13  E-value=0.00014  Score=56.77  Aligned_cols=95  Identities=17%  Similarity=0.234  Sum_probs=54.1

Q ss_pred             EEEEEeCCChhhhchhhhccc--------cCCcEEEEEEeCCChhhHHH-HHH-HHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028792           58 KLQIWDTAGQERFRTITSSYY--------RGAHGIIVVYDVTDQESFNN-VKQ-WLNEIDRYASENVNKLLVGNKCDLTA  127 (203)
Q Consensus        58 ~~~i~D~~g~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s~~~-~~~-~~~~l~~~~~~~~p~iiv~nK~D~~~  127 (203)
                      ...++++.|...-......+.        -..|+++-|+|+..-..... ... ...++ .+.     =+|++||.|+.+
T Consensus        86 D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qi-a~A-----D~ivlNK~Dlv~  159 (323)
T COG0523          86 DRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQL-AFA-----DVIVLNKTDLVD  159 (323)
T ss_pred             CEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHH-HhC-----cEEEEecccCCC
Confidence            456778877554433333332        23578999999875333221 222 22223 222     288999999987


Q ss_pred             CcccCHHHHHHHHHHcC--CCEEEEecCCCCCHHHH
Q 028792          128 NKVVSYETAKAFADEIG--IPFMETSAKSATNVEQA  161 (203)
Q Consensus       128 ~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~~  161 (203)
                      ...  .+.........+  ++++.++.. +.+..++
T Consensus       160 ~~~--l~~l~~~l~~lnp~A~i~~~~~~-~~~~~~l  192 (323)
T COG0523         160 AEE--LEALEARLRKLNPRARIIETSYG-DVDLAEL  192 (323)
T ss_pred             HHH--HHHHHHHHHHhCCCCeEEEcccc-CCCHHHh
Confidence            653  455555556655  678888773 3444433

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.12  E-value=6.2e-06  Score=63.53  Aligned_cols=59  Identities=29%  Similarity=0.287  Sum_probs=36.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCC-c-----cccceeeEEEEEEECCeEEEEEEEeCCChhhh
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDSYLESY-I-----STIGVDFKIRTVEQDGKTIKLQIWDTAGQERF   70 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~   70 (203)
                      -.++++|++|+|||||+|.|.+....... .     ....++.....+...+.   ..++|+||...+
T Consensus       162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~  226 (287)
T cd01854         162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREF  226 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCcc
Confidence            46899999999999999999975433211 1     11122333344444422   258999997543

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=98.10  E-value=4.7e-05  Score=54.16  Aligned_cols=83  Identities=16%  Similarity=0.097  Sum_probs=45.3

Q ss_pred             EEEEEEeCCChhhhc----hhhhccc--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc
Q 028792           57 IKLQIWDTAGQERFR----TITSSYY--RGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKV  130 (203)
Q Consensus        57 ~~~~i~D~~g~~~~~----~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~  130 (203)
                      ..+.++|++|.....    .....+.  ...+.+++|+|+.....   .......+....  + ..-++.||.|....  
T Consensus        83 ~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~~--~-~~~viltk~D~~~~--  154 (173)
T cd03115          83 FDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEAL--G-ITGVILTKLDGDAR--  154 (173)
T ss_pred             CCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhhC--C-CCEEEEECCcCCCC--
Confidence            457889999964221    1111111  34899999999865432   122222232222  2 34677899996532  


Q ss_pred             cCHHHHHHHHHHcCCCEEE
Q 028792          131 VSYETAKAFADEIGIPFME  149 (203)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~  149 (203)
                        .-.+.+.+...++|+..
T Consensus       155 --~g~~~~~~~~~~~p~~~  171 (173)
T cd03115         155 --GGAALSIRAVTGKPIKF  171 (173)
T ss_pred             --cchhhhhHHHHCcCeEe
Confidence              22233356666766644

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]

Probab=98.09  E-value=8e-05  Score=58.31  Aligned_cols=153  Identities=16%  Similarity=0.126  Sum_probs=85.9

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhcCCCCC------------------CCccccceeeEE-------------------
Q 028792            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLE------------------SYISTIGVDFKI-------------------   47 (203)
Q Consensus         5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~------------------~~~~~~~~~~~~-------------------   47 (203)
                      +=.+.+|+++|.-.+|||||+-.|.+.+.+.                  ...++++.++--                   
T Consensus       130 DF~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~Ld  209 (641)
T KOG0463|consen  130 DFIEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLD  209 (641)
T ss_pred             cceeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCccc
Confidence            3456899999999999999997776543321                  111111111110                   


Q ss_pred             EEEEECCeEEEEEEEeCCChhhhchhhhcc--ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 028792           48 RTVEQDGKTIKLQIWDTAGQERFRTITSSY--YRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL  125 (203)
Q Consensus        48 ~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~  125 (203)
                      +.-.+.+..--++++|+.|++.|....-.-  -...|..++++-++-.- +....+.+.....   ...|+++|++|+|+
T Consensus       210 WvkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGI-iGmTKEHLgLALa---L~VPVfvVVTKIDM  285 (641)
T KOG0463|consen  210 WVKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGI-IGMTKEHLGLALA---LHVPVFVVVTKIDM  285 (641)
T ss_pred             ceeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccc-eeccHHhhhhhhh---hcCcEEEEEEeecc
Confidence            011122223357899999999886533222  23467788888765321 1111222221111   26899999999998


Q ss_pred             CCCcccCH--HHHHHH--------------------------HHHcCCCEEEEecCCCCCHHHH
Q 028792          126 TANKVVSY--ETAKAF--------------------------ADEIGIPFMETSAKSATNVEQA  161 (203)
Q Consensus       126 ~~~~~~~~--~~~~~~--------------------------~~~~~~~~~~~Sa~~~~gi~~~  161 (203)
                      -..+.+.+  ..+..+                          ..+.-+++|.+|-.+|.++.-+
T Consensus       286 CPANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LL  349 (641)
T KOG0463|consen  286 CPANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLL  349 (641)
T ss_pred             CcHHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHH
Confidence            65433211  111111                          1222368999999999998643

>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=98.06  E-value=1e-05  Score=57.96  Aligned_cols=82  Identities=23%  Similarity=0.287  Sum_probs=40.2

Q ss_pred             EEEEEEeCCChhhhchh--hhc---cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc
Q 028792           57 IKLQIWDTAGQERFRTI--TSS---YYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVV  131 (203)
Q Consensus        57 ~~~~i~D~~g~~~~~~~--~~~---~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~  131 (203)
                      ....++++.|......+  ...   ..-..+.+|.|+|+..-.....+...+..-.....     ++++||.|+.+.. .
T Consensus        85 ~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~AD-----vIvlnK~D~~~~~-~  158 (178)
T PF02492_consen   85 PDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFAD-----VIVLNKIDLVSDE-Q  158 (178)
T ss_dssp             -SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-S-----EEEEE-GGGHHHH--
T ss_pred             cCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchhcC-----EEEEeccccCChh-h
Confidence            34567777775443333  000   12346889999999654322233332222222222     8899999986543 2


Q ss_pred             CHHHHHHHHHHcC
Q 028792          132 SYETAKAFADEIG  144 (203)
Q Consensus       132 ~~~~~~~~~~~~~  144 (203)
                      ..+...+..+..+
T Consensus       159 ~i~~~~~~ir~ln  171 (178)
T PF02492_consen  159 KIERVREMIRELN  171 (178)
T ss_dssp             -HHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHC
Confidence            2244445544443

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=98.01  E-value=2.7e-05  Score=55.14  Aligned_cols=135  Identities=18%  Similarity=0.291  Sum_probs=66.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeC-CChh--------------------
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDT-AGQE--------------------   68 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~-~g~~--------------------   68 (203)
                      +|++.|+||+|||||+++++..-....   .....+....+..++...-+.+.|. .|..                    
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~l~~~~---~~v~Gf~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~   77 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEELKKKG---LPVGGFYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVD   77 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHHHHHTC---GGEEEEEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-
T ss_pred             CEEEECcCCCCHHHHHHHHHHHhhccC---CccceEEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEc
Confidence            689999999999999999874321100   0112234444444454555566666 2211                    


Q ss_pred             --hhchhhhccc----cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCC-CCCCCcccCHHHHHHHHH
Q 028792           69 --RFRTITSSYY----RGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKC-DLTANKVVSYETAKAFAD  141 (203)
Q Consensus        69 --~~~~~~~~~~----~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~-D~~~~~~~~~~~~~~~~~  141 (203)
                        .+.......+    ..+|  ++++|=-.+-.+ ....|.+.+......+.|++.++.+. +.        ..+.++..
T Consensus        78 ~e~fe~~~~~~L~~~~~~~~--liviDEIG~mEl-~~~~F~~~v~~~l~s~~~vi~vv~~~~~~--------~~l~~i~~  146 (168)
T PF03266_consen   78 LESFEEIGLPALRNALSSSD--LIVIDEIGKMEL-KSPGFREAVEKLLDSNKPVIGVVHKRSDN--------PFLEEIKR  146 (168)
T ss_dssp             HHHHHCCCCCCCHHHHHCCH--EEEE---STTCC-C-CHHHHHHHHHHCTTSEEEEE--SS--S--------CCHHHHHT
T ss_pred             HHHHHHHHHHHHHhhcCCCC--EEEEeccchhhh-cCHHHHHHHHHHHcCCCcEEEEEecCCCc--------HHHHHHHh
Confidence              0111111111    3445  777774322110 01234555555555678888888777 32        12445555


Q ss_pred             HcCCCEEEEecCCCCCH
Q 028792          142 EIGIPFMETSAKSATNV  158 (203)
Q Consensus       142 ~~~~~~~~~Sa~~~~gi  158 (203)
                      ..++.++.++..+.+-+
T Consensus       147 ~~~~~i~~vt~~NRd~l  163 (168)
T PF03266_consen  147 RPDVKIFEVTEENRDAL  163 (168)
T ss_dssp             TTTSEEEE--TTTCCCH
T ss_pred             CCCcEEEEeChhHHhhH
Confidence            66788888877665444

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>cd03114 ArgK-like The function of this protein family is unkown

Probab=98.00  E-value=2.9e-05  Score=53.82  Aligned_cols=58  Identities=21%  Similarity=0.241  Sum_probs=35.8

Q ss_pred             EEEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCC
Q 028792           56 TIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCD  124 (203)
Q Consensus        56 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D  124 (203)
                      .+.+.++|++|...   ....++..+|.++++....-.+.+.-++.   .+..     ..-++++||+|
T Consensus        91 ~~D~iiIDtaG~~~---~~~~~~~~Ad~~ivv~tpe~~D~y~~~k~---~~~~-----~~~~~~~~k~~  148 (148)
T cd03114          91 GFDVIIVETVGVGQ---SEVDIASMADTTVVVMAPGAGDDIQAIKA---GIME-----IADIVVVNKAD  148 (148)
T ss_pred             CCCEEEEECCccCh---hhhhHHHhCCEEEEEECCCchhHHHHhhh---hHhh-----hcCEEEEeCCC
Confidence            35788999988542   23358889999999998763332211111   1111     23388999997

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>KOG1534 consensus Putative transcription factor FET5 [Transcription]

Probab=97.92  E-value=2.1e-05  Score=56.66  Aligned_cols=110  Identities=16%  Similarity=0.236  Sum_probs=58.8

Q ss_pred             EEEEEeCCChhhhch---hhhccc---cC---CcEEEEEEeCCC-hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028792           58 KLQIWDTAGQERFRT---ITSSYY---RG---AHGIIVVYDVTD-QESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTA  127 (203)
Q Consensus        58 ~~~i~D~~g~~~~~~---~~~~~~---~~---~d~~i~v~d~~~-~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~  127 (203)
                      .+.++|+||+.+...   ....++   ++   --++++++|..= -++..-+.--+..+.....-..|.|=|++|+|+..
T Consensus        99 dylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~lE~P~INvlsKMDLlk  178 (273)
T KOG1534|consen   99 DYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISLEVPHINVLSKMDLLK  178 (273)
T ss_pred             CEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHhcCcchhhhhHHHHhh
Confidence            467999999765321   111111   11   225666666431 12222222333333444444689999999999875


Q ss_pred             CcccCHHHH-------------------------------HHHHHHcC-CCEEEEecCCCCCHHHHHHHHHHHH
Q 028792          128 NKVVSYETA-------------------------------KAFADEIG-IPFMETSAKSATNVEQAFMAMAASI  169 (203)
Q Consensus       128 ~~~~~~~~~-------------------------------~~~~~~~~-~~~~~~Sa~~~~gi~~~~~~l~~~~  169 (203)
                      ..  +.+++                               .++...++ +.+++....+-+.++.++..+-..+
T Consensus       179 ~~--~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~ID~ai  250 (273)
T KOG1534|consen  179 DK--NKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSYIDDAI  250 (273)
T ss_pred             hh--hHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHHHHHHHHH
Confidence            41  11111                               11122223 4677888888888888887765544

>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []

Probab=97.89  E-value=0.0015  Score=45.92  Aligned_cols=144  Identities=10%  Similarity=0.097  Sum_probs=101.8

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEE
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV   86 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (203)
                      ....|+++|..+.++..|..++......          +.........  +     =.|.  +    ....=...|.++|
T Consensus        14 n~atiLLVg~e~~~~~~LA~a~l~~~~~----------~~l~Vh~a~s--L-----PLp~--e----~~~lRprIDlIVF   70 (176)
T PF11111_consen   14 NTATILLVGTEEALLQQLAEAMLEEDKE----------FKLKVHLAKS--L-----PLPS--E----NNNLRPRIDLIVF   70 (176)
T ss_pred             ceeEEEEecccHHHHHHHHHHHHhhccc----------eeEEEEEecc--C-----CCcc--c----ccCCCceeEEEEE
Confidence            4678999999999999999999863211          1111111111  0     0111  1    1112356899999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHH
Q 028792           87 VYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMA  166 (203)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  166 (203)
                      ++|.....++..++.-+..+....-. ..+.++++-....+...+...++.+++..++++++.+.....++...+-..|.
T Consensus        71 vinl~sk~SL~~ve~SL~~vd~~ffl-GKVCfl~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~~lAqRLL  149 (176)
T PF11111_consen   71 VINLHSKYSLQSVEASLSHVDPSFFL-GKVCFLATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGRTSLAQRLL  149 (176)
T ss_pred             EEecCCcccHHHHHHHHhhCChhhhc-cceEEEEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccchHHHHHHHHHH
Confidence            99999999988888766655332222 45677888887777778889999999999999999999999989888888888


Q ss_pred             HHHHHHhc
Q 028792          167 ASIKNRMA  174 (203)
Q Consensus       167 ~~~~~~~~  174 (203)
                      +.+..-..
T Consensus       150 ~~lqi~aG  157 (176)
T PF11111_consen  150 RMLQICAG  157 (176)
T ss_pred             HHHHHHcC
Confidence            87665433

CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.88  E-value=0.00036  Score=57.68  Aligned_cols=90  Identities=17%  Similarity=0.170  Sum_probs=48.0

Q ss_pred             EEEEEEeCCChhhhchhh----hccc-cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc
Q 028792           57 IKLQIWDTAGQERFRTIT----SSYY-RGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVV  131 (203)
Q Consensus        57 ~~~~i~D~~g~~~~~~~~----~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~  131 (203)
                      ..+.|+|++|........    ..+. ......++|++.+.  +...+...+..+..    ..+.-+|+||.|...    
T Consensus       429 ~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAts--s~~Dl~eii~~f~~----~~~~gvILTKlDEt~----  498 (559)
T PRK12727        429 YKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANA--HFSDLDEVVRRFAH----AKPQGVVLTKLDETG----  498 (559)
T ss_pred             CCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCC--ChhHHHHHHHHHHh----hCCeEEEEecCcCcc----
Confidence            578899999954322111    0010 11234567777663  22233333322222    246678999999632    


Q ss_pred             CHHHHHHHHHHcCCCEEEEecCCCCCH
Q 028792          132 SYETAKAFADEIGIPFMETSAKSATNV  158 (203)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~Sa~~~~gi  158 (203)
                      ..-.+.......+.++..++.  |..+
T Consensus       499 ~lG~aLsv~~~~~LPI~yvt~--GQ~V  523 (559)
T PRK12727        499 RFGSALSVVVDHQMPITWVTD--GQRV  523 (559)
T ss_pred             chhHHHHHHHHhCCCEEEEeC--CCCc
Confidence            234556666677777666643  4444

>KOG2484 consensus GTPase [General function prediction only]

Probab=97.88  E-value=1.4e-05  Score=62.70  Aligned_cols=58  Identities=22%  Similarity=0.319  Sum_probs=43.0

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCh
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ   67 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~   67 (203)
                      ...+++.|+|.|++||||+||+|.....-.. ..+.+.+...+.+..+.   .+.++|.||.
T Consensus       250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~v-g~~pGvT~smqeV~Ldk---~i~llDsPgi  307 (435)
T KOG2484|consen  250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNV-GNVPGVTRSMQEVKLDK---KIRLLDSPGI  307 (435)
T ss_pred             CcceEeeeecCCCCChhHHHHHHHHhccccC-CCCccchhhhhheeccC---CceeccCCce
Confidence            4669999999999999999999997654221 23444445566666654   5789999994

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.88  E-value=6.5e-05  Score=60.55  Aligned_cols=89  Identities=13%  Similarity=0.082  Sum_probs=49.0

Q ss_pred             EEEEEEeCCChhhhc----hhhhccc--cCCcEEEEEEeCCC-hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc
Q 028792           57 IKLQIWDTAGQERFR----TITSSYY--RGAHGIIVVYDVTD-QESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANK  129 (203)
Q Consensus        57 ~~~~i~D~~g~~~~~----~~~~~~~--~~~d~~i~v~d~~~-~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~  129 (203)
                      ..+.++||+|.....    .....+.  ....-.++|+|++. .+.+.++..      .+... ..--++++|.|-..  
T Consensus       270 ~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~------~f~~~-~~~~~I~TKlDEt~--  340 (420)
T PRK14721        270 KHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVIS------AYQGH-GIHGCIITKVDEAA--  340 (420)
T ss_pred             CCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHH------HhcCC-CCCEEEEEeeeCCC--
Confidence            357899999954321    1122221  23456789999874 333332222      22221 23366799999543  


Q ss_pred             ccCHHHHHHHHHHcCCCEEEEecCCCCCH
Q 028792          130 VVSYETAKAFADEIGIPFMETSAKSATNV  158 (203)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  158 (203)
                        ..=.+..+....+.++..++.  |.++
T Consensus       341 --~~G~~l~~~~~~~lPi~yvt~--Gq~V  365 (420)
T PRK14721        341 --SLGIALDAVIRRKLVLHYVTN--GQKV  365 (420)
T ss_pred             --CccHHHHHHHHhCCCEEEEEC--CCCc
Confidence              233455666777877766653  4555

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=97.83  E-value=4.4e-05  Score=61.94  Aligned_cols=85  Identities=20%  Similarity=0.110  Sum_probs=46.1

Q ss_pred             EEEEEeCCChhhhchhh----hc--cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc
Q 028792           58 KLQIWDTAGQERFRTIT----SS--YYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVV  131 (203)
Q Consensus        58 ~~~i~D~~g~~~~~~~~----~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~  131 (203)
                      .+.|+||+|........    ..  -...+|.+++|+|++....   .......+....   ...-+|+||.|....   
T Consensus       177 DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~---av~~a~~F~~~l---~i~gvIlTKlD~~a~---  247 (437)
T PRK00771        177 DVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQ---AKNQAKAFHEAV---GIGGIIITKLDGTAK---  247 (437)
T ss_pred             CEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHH---HHHHHHHHHhcC---CCCEEEEecccCCCc---
Confidence            68899999965432211    11  1346789999999876421   112222222111   133667899996432   


Q ss_pred             CHHHHHHHHHHcCCCEEEEec
Q 028792          132 SYETAKAFADEIGIPFMETSA  152 (203)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~Sa  152 (203)
                       .=.+.......+.|+..++.
T Consensus       248 -~G~~ls~~~~~~~Pi~fig~  267 (437)
T PRK00771        248 -GGGALSAVAETGAPIKFIGT  267 (437)
T ss_pred             -ccHHHHHHHHHCcCEEEEec
Confidence             12244455566777665543

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.83  E-value=0.00041  Score=55.34  Aligned_cols=85  Identities=13%  Similarity=0.074  Sum_probs=46.2

Q ss_pred             EEEEEEeCCChhhhchh----hhccc--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc
Q 028792           57 IKLQIWDTAGQERFRTI----TSSYY--RGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKV  130 (203)
Q Consensus        57 ~~~~i~D~~g~~~~~~~----~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~  130 (203)
                      +.+.++||+|.......    ...++  ...+.++||+|++-..  ..+......+...    ..--++++|.|-...  
T Consensus       321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~--~d~~~i~~~F~~~----~idglI~TKLDET~k--  392 (436)
T PRK11889        321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKDI----HIDGIVFTKFDETAS--  392 (436)
T ss_pred             CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh--HHHHHHHHHhcCC----CCCEEEEEcccCCCC--
Confidence            56889999995432111    12222  2356788999875322  1222332223221    233678999996432  


Q ss_pred             cCHHHHHHHHHHcCCCEEEEe
Q 028792          131 VSYETAKAFADEIGIPFMETS  151 (203)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~S  151 (203)
                        .=.+..++...++|+..++
T Consensus       393 --~G~iLni~~~~~lPIsyit  411 (436)
T PRK11889        393 --SGELLKIPAVSSAPIVLMT  411 (436)
T ss_pred             --ccHHHHHHHHHCcCEEEEe
Confidence              2235556666777765554

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=97.83  E-value=0.00011  Score=41.66  Aligned_cols=45  Identities=27%  Similarity=0.285  Sum_probs=29.6

Q ss_pred             cCCcEEEEEEeCCChh--hHHHHHHHHHHHHhhcCCCCcEEEEEeCCC
Q 028792           79 RGAHGIIVVYDVTDQE--SFNNVKQWLNEIDRYASENVNKLLVGNKCD  124 (203)
Q Consensus        79 ~~~d~~i~v~d~~~~~--s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D  124 (203)
                      .-.++++|++|++...  ++++-..++..++.... +.|+++|+||+|
T Consensus        12 hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~-~~P~i~V~nK~D   58 (58)
T PF06858_consen   12 HLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFP-NKPVIVVLNKID   58 (58)
T ss_dssp             GT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTT-TS-EEEEE--TT
T ss_pred             hhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcC-CCCEEEEEeccC
Confidence            4478999999999654  55565667777877654 689999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]

Probab=97.82  E-value=0.00012  Score=54.64  Aligned_cols=126  Identities=19%  Similarity=0.168  Sum_probs=80.0

Q ss_pred             eEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChh----------hHHHHHHHHHHHHhhcC-CC
Q 028792           45 FKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQE----------SFNNVKQWLNEIDRYAS-EN  113 (203)
Q Consensus        45 ~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~l~~~~~-~~  113 (203)
                      +....+.++.  ++|+++|.+|+..-+..|...++++.++|||+..++-+          .+.+...++..+....- ..
T Consensus       192 Ifet~FqVdk--v~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~t  269 (379)
T KOG0099|consen  192 IFETKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRT  269 (379)
T ss_pred             eeeEEEeccc--cceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhh
Confidence            3333444444  77999999999988999999999999999999987421          23333333333322211 34


Q ss_pred             CcEEEEEeCCCCCCCcc----------------------------cCHH--HHHHHH----HH---------cCCCEEEE
Q 028792          114 VNKLLVGNKCDLTANKV----------------------------VSYE--TAKAFA----DE---------IGIPFMET  150 (203)
Q Consensus       114 ~p~iiv~nK~D~~~~~~----------------------------~~~~--~~~~~~----~~---------~~~~~~~~  150 (203)
                      ..+|++.||.|+.....                            .+..  .+.-+.    ..         +-+.+..+
T Consensus       270 isvIlFLNKqDllaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHFT  349 (379)
T KOG0099|consen  270 ISVILFLNKQDLLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFT  349 (379)
T ss_pred             hheeEEecHHHHHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceeccccee
Confidence            77899999999853210                            0000  001011    11         11445678


Q ss_pred             ecCCCCCHHHHHHHHHHHHHHH
Q 028792          151 SAKSATNVEQAFMAMAASIKNR  172 (203)
Q Consensus       151 Sa~~~~gi~~~~~~l~~~~~~~  172 (203)
                      .|.+-++|..+|....+.+...
T Consensus       350 cAvDTenIrrVFnDcrdiIqr~  371 (379)
T KOG0099|consen  350 CAVDTENIRRVFNDCRDIIQRM  371 (379)
T ss_pred             EeechHHHHHHHHHHHHHHHHH
Confidence            8999999999999888776643

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.78  E-value=7.5e-05  Score=60.60  Aligned_cols=90  Identities=18%  Similarity=0.174  Sum_probs=49.8

Q ss_pred             EEEEEEeCCChhhhc----hhhhcccc---CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc
Q 028792           57 IKLQIWDTAGQERFR----TITSSYYR---GAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANK  129 (203)
Q Consensus        57 ~~~~i~D~~g~~~~~----~~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~  129 (203)
                      ..+.++|++|.....    .....++.   ...-+.+|++++-..  ..+.+....+.   ..+ +--+++||.|-..  
T Consensus       300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~--~~l~~~~~~f~---~~~-~~~vI~TKlDet~--  371 (424)
T PRK05703        300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY--EDLKDIYKHFS---RLP-LDGLIFTKLDETS--  371 (424)
T ss_pred             CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH--HHHHHHHHHhC---CCC-CCEEEEecccccc--
Confidence            568899999964332    11222333   234677888886422  22233222222   111 2357899999532  


Q ss_pred             ccCHHHHHHHHHHcCCCEEEEecCCCCCH
Q 028792          130 VVSYETAKAFADEIGIPFMETSAKSATNV  158 (203)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  158 (203)
                        ..-.+..+....++++..++.  |.++
T Consensus       372 --~~G~i~~~~~~~~lPv~yit~--Gq~V  396 (424)
T PRK05703        372 --SLGSILSLLIESGLPISYLTN--GQRV  396 (424)
T ss_pred             --cccHHHHHHHHHCCCEEEEeC--CCCC
Confidence              233566777788888776653  4444

>PRK10867 signal recognition particle protein; Provisional

Probab=97.73  E-value=0.00024  Score=57.61  Aligned_cols=86  Identities=16%  Similarity=0.091  Sum_probs=46.3

Q ss_pred             EEEEEEeCCChhhhchh----hhcc--ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc
Q 028792           57 IKLQIWDTAGQERFRTI----TSSY--YRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKV  130 (203)
Q Consensus        57 ~~~~i~D~~g~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~  130 (203)
                      +.+.|+||+|.......    ...+  .-..+.+++|+|+...+.   .......+....   ...-+|+||.|-.... 
T Consensus       184 ~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq~---av~~a~~F~~~~---~i~giIlTKlD~~~rg-  256 (433)
T PRK10867        184 YDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQD---AVNTAKAFNEAL---GLTGVILTKLDGDARG-  256 (433)
T ss_pred             CCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHHH---HHHHHHHHHhhC---CCCEEEEeCccCcccc-
Confidence            56889999995332111    1111  125677899999865332   222222232211   1235678999953221 


Q ss_pred             cCHHHHHHHHHHcCCCEEEEec
Q 028792          131 VSYETAKAFADEIGIPFMETSA  152 (203)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~Sa  152 (203)
                         =.+.......++|+..++.
T Consensus       257 ---G~alsi~~~~~~PI~fig~  275 (433)
T PRK10867        257 ---GAALSIRAVTGKPIKFIGT  275 (433)
T ss_pred             ---cHHHHHHHHHCcCEEEEeC
Confidence               1255556677777766554

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=97.72  E-value=0.00051  Score=54.61  Aligned_cols=155  Identities=18%  Similarity=0.221  Sum_probs=76.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC--CCCC-ccccceeeEEE-----------------EEEE----------CCeEEEE
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDSY--LESY-ISTIGVDFKIR-----------------TVEQ----------DGKTIKL   59 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~~--~~~~-~~~~~~~~~~~-----------------~~~~----------~~~~~~~   59 (203)
                      -|++|||.||||||.+-+|.....  .... ..-++++.+-.                 .+..          .-....+
T Consensus       205 vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~d~  284 (407)
T COG1419         205 VIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDCDV  284 (407)
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcCCE
Confidence            578999999999999998865332  1110 00011111000                 0000          1112468


Q ss_pred             EEEeCCChhhhchhh----hcccc--CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCH
Q 028792           60 QIWDTAGQERFRTIT----SSYYR--GAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSY  133 (203)
Q Consensus        60 ~i~D~~g~~~~~~~~----~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~  133 (203)
                      .++||.|...++...    ..++.  ...-+.+|++++...  ..+...+..+...   +.. -++++|.|-.    -..
T Consensus       285 ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~--~dlkei~~~f~~~---~i~-~~I~TKlDET----~s~  354 (407)
T COG1419         285 ILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKY--EDLKEIIKQFSLF---PID-GLIFTKLDET----TSL  354 (407)
T ss_pred             EEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcch--HHHHHHHHHhccC---Ccc-eeEEEccccc----Cch
Confidence            899999966554432    22322  234566778876532  2333333333222   222 4568999943    223


Q ss_pred             HHHHHHHHHcCCCEEEEe--cCCCCCHHHH-HHHHHHHHHHHhc
Q 028792          134 ETAKAFADEIGIPFMETS--AKSATNVEQA-FMAMAASIKNRMA  174 (203)
Q Consensus       134 ~~~~~~~~~~~~~~~~~S--a~~~~gi~~~-~~~l~~~~~~~~~  174 (203)
                      =.+.......+.|+-.++  ..-.+++..+ -.||++.+.....
T Consensus       355 G~~~s~~~e~~~PV~YvT~GQ~VPeDI~va~~~~Lv~~~~g~~~  398 (407)
T COG1419         355 GNLFSLMYETRLPVSYVTNGQRVPEDIVVANPDYLVRRILGTFA  398 (407)
T ss_pred             hHHHHHHHHhCCCeEEEeCCCCCCchhhhcChHHHHHHHhcccc
Confidence            334455555566654443  2223333322 2455555554433

>TIGR00959 ffh signal recognition particle protein

Probab=97.72  E-value=0.00025  Score=57.50  Aligned_cols=86  Identities=17%  Similarity=0.117  Sum_probs=47.8

Q ss_pred             EEEEEEeCCChhhhchh----hhcc--ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc
Q 028792           57 IKLQIWDTAGQERFRTI----TSSY--YRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKV  130 (203)
Q Consensus        57 ~~~~i~D~~g~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~  130 (203)
                      +.+.++||+|.......    ...+  .-..|.+++|+|+...+   +.......+....   ...-+|.||.|-.... 
T Consensus       183 ~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq---~~~~~a~~f~~~v---~i~giIlTKlD~~~~~-  255 (428)
T TIGR00959       183 FDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ---DAVNTAKTFNERL---GLTGVVLTKLDGDARG-  255 (428)
T ss_pred             CCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH---HHHHHHHHHHhhC---CCCEEEEeCccCcccc-
Confidence            46889999994332111    1111  23478889999987543   2223323332221   1336679999953221 


Q ss_pred             cCHHHHHHHHHHcCCCEEEEec
Q 028792          131 VSYETAKAFADEIGIPFMETSA  152 (203)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~Sa  152 (203)
                         =.+.......++|+..+..
T Consensus       256 ---G~~lsi~~~~~~PI~fi~~  274 (428)
T TIGR00959       256 ---GAALSVRSVTGKPIKFIGV  274 (428)
T ss_pred             ---cHHHHHHHHHCcCEEEEeC
Confidence               1255666677888766554

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]

Probab=97.71  E-value=7e-05  Score=57.09  Aligned_cols=60  Identities=17%  Similarity=0.254  Sum_probs=36.8

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCC------CCCCccccceeeEEEEEEECCeEEEEEEEeCCCh
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSY------LESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ   67 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~   67 (203)
                      +..+++.|+|-||+|||||||++.....      .....+.++..+... +.+.+.. .+.++||||.
T Consensus       141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~-iri~~rp-~vy~iDTPGi  206 (335)
T KOG2485|consen  141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSER-IRISHRP-PVYLIDTPGI  206 (335)
T ss_pred             CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhh-eEeccCC-ceEEecCCCc
Confidence            4568999999999999999999863211      112223333222221 3333322 2678999994

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=97.68  E-value=0.00019  Score=49.26  Aligned_cols=106  Identities=17%  Similarity=0.172  Sum_probs=60.0

Q ss_pred             EEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEEeCC
Q 028792           12 LLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVT   91 (203)
Q Consensus        12 ~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~   91 (203)
                      +.-|.+|+|||++--.+...-.... .+..-.+...   ......+.+.++|+|+..  .......+..+|.++++.+.+
T Consensus         4 ~~~~kgg~gkt~~~~~~a~~~~~~~-~~~~~vd~D~---~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~   77 (139)
T cd02038           4 VTSGKGGVGKTNISANLALALAKLG-KRVLLLDADL---GLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE   77 (139)
T ss_pred             EEcCCCCCcHHHHHHHHHHHHHHCC-CcEEEEECCC---CCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC
Confidence            3457789999998776642110000 0011000000   000111568899999743  333456789999999999876


Q ss_pred             ChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 028792           92 DQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL  125 (203)
Q Consensus        92 ~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~  125 (203)
                       ..++..+...++.+.... ...++.+|+|+.+.
T Consensus        78 -~~s~~~~~~~l~~l~~~~-~~~~~~lVvN~~~~  109 (139)
T cd02038          78 -PTSITDAYALIKKLAKQL-RVLNFRVVVNRAES  109 (139)
T ss_pred             -hhHHHHHHHHHHHHHHhc-CCCCEEEEEeCCCC
Confidence             334444444444444332 24577899999974

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=97.68  E-value=0.00028  Score=45.99  Aligned_cols=102  Identities=19%  Similarity=0.130  Sum_probs=57.5

Q ss_pred             EEE-cCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEEeC
Q 028792           12 LLI-GDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDV   90 (203)
Q Consensus        12 ~i~-G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~   90 (203)
                      +++ +..|+||||+...|...-.......+.-.+..     .... ..+.++|+|+...  ......+..+|.++++.+.
T Consensus         3 ~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d-----~~~~-~D~IIiDtpp~~~--~~~~~~l~~aD~vlvvv~~   74 (106)
T cd03111           3 AFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLD-----LQFG-DDYVVVDLGRSLD--EVSLAALDQADRVFLVTQQ   74 (106)
T ss_pred             EEECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECC-----CCCC-CCEEEEeCCCCcC--HHHHHHHHHcCeEEEEecC
Confidence            443 45789999988777532111100011111111     1111 1578999998543  2334567889999999976


Q ss_pred             CChhhHHHHHHHHHHHHhhcCC-CCcEEEEEeC
Q 028792           91 TDQESFNNVKQWLNEIDRYASE-NVNKLLVGNK  122 (203)
Q Consensus        91 ~~~~s~~~~~~~~~~l~~~~~~-~~p~iiv~nK  122 (203)
                      + ..++..+..+++.+...... ...+.+|+|+
T Consensus        75 ~-~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr  106 (106)
T cd03111          75 D-LPSIRNAKRLLELLRVLDYSLPAKIELVLNR  106 (106)
T ss_pred             C-hHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence            5 44556666666666554433 3566777775

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=97.67  E-value=0.00036  Score=44.10  Aligned_cols=69  Identities=20%  Similarity=0.195  Sum_probs=44.3

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchh-hhccccCCcEEEEEEe
Q 028792           11 LLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI-TSSYYRGAHGIIVVYD   89 (203)
Q Consensus        11 i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-~~~~~~~~d~~i~v~d   89 (203)
                      +++.|.+|+||||+...+...-....+          .....+    .+.++|+++....... .......+|.++++++
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~----------~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~   67 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALAKRGK----------RVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT   67 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCC----------eEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence            678899999999999988743211110          111122    5779999985432221 1456678999999998


Q ss_pred             CCCh
Q 028792           90 VTDQ   93 (203)
Q Consensus        90 ~~~~   93 (203)
                      ....
T Consensus        68 ~~~~   71 (99)
T cd01983          68 PEAL   71 (99)
T ss_pred             Cchh
Confidence            7643

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.66  E-value=0.00034  Score=60.22  Aligned_cols=92  Identities=15%  Similarity=0.083  Sum_probs=49.5

Q ss_pred             EEEEEEeCCChhhhc----hhhhcc--ccCCcEEEEEEeCCC-hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc
Q 028792           57 IKLQIWDTAGQERFR----TITSSY--YRGAHGIIVVYDVTD-QESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANK  129 (203)
Q Consensus        57 ~~~~i~D~~g~~~~~----~~~~~~--~~~~d~~i~v~d~~~-~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~  129 (203)
                      ..+.|+||+|.....    .....+  ....+-.++|+|++. .+.+.++...   +...... .+--+|++|.|-... 
T Consensus       264 ~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~---f~~~~~~-~i~glIlTKLDEt~~-  338 (767)
T PRK14723        264 KHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHA---YRHGAGE-DVDGCIITKLDEATH-  338 (767)
T ss_pred             CCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHH---HhhcccC-CCCEEEEeccCCCCC-
Confidence            468899999943221    111111  234567889999874 3333333332   2221110 133577999995432 


Q ss_pred             ccCHHHHHHHHHHcCCCEEEEecCCCCCH
Q 028792          130 VVSYETAKAFADEIGIPFMETSAKSATNV  158 (203)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  158 (203)
                         .=.+..+....++|+..++.  |++|
T Consensus       339 ---~G~iL~i~~~~~lPI~yit~--GQ~V  362 (767)
T PRK14723        339 ---LGPALDTVIRHRLPVHYVST--GQKV  362 (767)
T ss_pred             ---ccHHHHHHHHHCCCeEEEec--CCCC
Confidence               23355566677777766643  5555

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.66  E-value=0.00021  Score=57.41  Aligned_cols=132  Identities=20%  Similarity=0.204  Sum_probs=67.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCC-CCC---------CC------------ccccceeeEEEE-E-----EECCeEEEEE
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDS-YLE---------SY------------ISTIGVDFKIRT-V-----EQDGKTIKLQ   60 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~-~~~---------~~------------~~~~~~~~~~~~-~-----~~~~~~~~~~   60 (203)
                      .-++++|++||||||++.+|.... ...         ..            ....+....... .     ........+.
T Consensus       224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~V  303 (432)
T PRK12724        224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSELI  303 (432)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCEE
Confidence            458899999999999999986321 000         00            000011111000 0     0011235678


Q ss_pred             EEeCCChhhhch----hhhcccc-----CCcEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc
Q 028792           61 IWDTAGQERFRT----ITSSYYR-----GAHGIIVVYDVTDQE-SFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKV  130 (203)
Q Consensus        61 i~D~~g~~~~~~----~~~~~~~-----~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~  130 (203)
                      ++||+|......    .+..++.     ...-.++|+|++... ....+..      .+..- .+--+|++|.|-...  
T Consensus       304 LIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~------~f~~~-~~~glIlTKLDEt~~--  374 (432)
T PRK12724        304 LIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLK------AYESL-NYRRILLTKLDEADF--  374 (432)
T ss_pred             EEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHH------HhcCC-CCCEEEEEcccCCCC--
Confidence            999999542111    1222221     234678999987543 3222222      22111 233678999995422  


Q ss_pred             cCHHHHHHHHHHcCCCEEEEe
Q 028792          131 VSYETAKAFADEIGIPFMETS  151 (203)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~S  151 (203)
                        .=.+.......+.|+..++
T Consensus       375 --~G~il~i~~~~~lPI~ylt  393 (432)
T PRK12724        375 --LGSFLELADTYSKSFTYLS  393 (432)
T ss_pred             --ccHHHHHHHHHCCCEEEEe
Confidence              2235555666777765554

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.64  E-value=0.00041  Score=47.19  Aligned_cols=24  Identities=38%  Similarity=0.538  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCC
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~   32 (203)
                      -.+++.|++|+|||+|++.+...-
T Consensus        20 ~~v~i~G~~G~GKT~l~~~i~~~~   43 (151)
T cd00009          20 KNLLLYGPPGTGKTTLARAIANEL   43 (151)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHh
Confidence            468999999999999999998654

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=97.63  E-value=0.00033  Score=45.35  Aligned_cols=82  Identities=15%  Similarity=0.210  Sum_probs=48.9

Q ss_pred             EEEEc-CCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEEe
Q 028792           11 LLLIG-DSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYD   89 (203)
Q Consensus        11 i~i~G-~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   89 (203)
                      |.|.| ..|+||||+...|...-.... .+..       .+..+.. +.+.++|+|+...  ......+..+|.++++++
T Consensus         2 i~~~~~kgG~Gkst~~~~la~~~~~~~-~~vl-------~~d~d~~-~d~viiD~p~~~~--~~~~~~l~~ad~viv~~~   70 (104)
T cd02042           2 IAVANQKGGVGKTTTAVNLAAALARRG-KRVL-------LIDLDPQ-YDYIIIDTPPSLG--LLTRNALAAADLVLIPVQ   70 (104)
T ss_pred             EEEEeCCCCcCHHHHHHHHHHHHHhCC-CcEE-------EEeCCCC-CCEEEEeCcCCCC--HHHHHHHHHCCEEEEecc
Confidence            56667 568999999888763221111 1111       1111111 5688999998543  223367788999999998


Q ss_pred             CCChhhHHHHHHHHH
Q 028792           90 VTDQESFNNVKQWLN  104 (203)
Q Consensus        90 ~~~~~s~~~~~~~~~  104 (203)
                      .+ ..++..+..+++
T Consensus        71 ~~-~~s~~~~~~~~~   84 (104)
T cd02042          71 PS-PLDLDGLEKLLE   84 (104)
T ss_pred             CC-HHHHHHHHHHHH
Confidence            75 445555555544

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.60  E-value=0.00045  Score=54.84  Aligned_cols=86  Identities=15%  Similarity=0.117  Sum_probs=46.1

Q ss_pred             EEEEEEeCCChhhhchh----hhccc--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc
Q 028792           57 IKLQIWDTAGQERFRTI----TSSYY--RGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKV  130 (203)
Q Consensus        57 ~~~~i~D~~g~~~~~~~----~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~  130 (203)
                      +.+.++||+|.......    ...+.  ...+.+++|.++..  ...++...+.   .+.. -.+--+++||.|-..   
T Consensus       286 ~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~--~~~d~~~i~~---~f~~-l~i~glI~TKLDET~---  356 (407)
T PRK12726        286 VDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGM--KSADVMTILP---KLAE-IPIDGFIITKMDETT---  356 (407)
T ss_pred             CCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcc--cHHHHHHHHH---hcCc-CCCCEEEEEcccCCC---
Confidence            57889999996433221    11222  23466677777632  2222233222   2222 123467799999542   


Q ss_pred             cCHHHHHHHHHHcCCCEEEEec
Q 028792          131 VSYETAKAFADEIGIPFMETSA  152 (203)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~Sa  152 (203)
                       ..=.+.......+.|+..++.
T Consensus       357 -~~G~~Lsv~~~tglPIsylt~  377 (407)
T PRK12726        357 -RIGDLYTVMQETNLPVLYMTD  377 (407)
T ss_pred             -CccHHHHHHHHHCCCEEEEec
Confidence             223355666677877766653

>TIGR02475 CobW cobalamin biosynthesis protein CobW

Probab=97.59  E-value=0.0018  Score=51.16  Aligned_cols=22  Identities=23%  Similarity=0.419  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~   31 (203)
                      -.+|.|.-|||||||+++++..
T Consensus         6 v~iltGFLGaGKTTll~~ll~~   27 (341)
T TIGR02475         6 VTIVTGFLGAGKTTLIRHLLQN   27 (341)
T ss_pred             EEEEEECCCCCHHHHHHHHHhc
Confidence            4678999999999999999853

A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=97.59  E-value=5.6e-05  Score=54.03  Aligned_cols=23  Identities=35%  Similarity=0.725  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~   31 (203)
                      ++|+|+|+|||||||+.+.|...
T Consensus         1 ~riiilG~pGaGK~T~A~~La~~   23 (178)
T COG0563           1 MRILILGPPGAGKSTLAKKLAKK   23 (178)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999999875

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.58  E-value=6.4e-05  Score=50.05  Aligned_cols=22  Identities=32%  Similarity=0.549  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~   31 (203)
                      .|+|.|++||||||+.+.|...
T Consensus         1 vI~I~G~~gsGKST~a~~La~~   22 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAER   22 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999999763

...

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.57  E-value=0.00068  Score=55.69  Aligned_cols=89  Identities=18%  Similarity=0.204  Sum_probs=47.2

Q ss_pred             EEEEEEeCCChhhhchh---hhccccC---CcEEEEEEeCCC-hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc
Q 028792           57 IKLQIWDTAGQERFRTI---TSSYYRG---AHGIIVVYDVTD-QESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANK  129 (203)
Q Consensus        57 ~~~~i~D~~g~~~~~~~---~~~~~~~---~d~~i~v~d~~~-~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~  129 (203)
                      ..+.++|++|.......   ....+..   ..-.++|+|++. ...+.++      +..+... ...-+|+||.|-..  
T Consensus       335 ~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l~~i------~~~f~~~-~~~g~IlTKlDet~--  405 (484)
T PRK06995        335 KHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDTLNEV------VQAYRGP-GLAGCILTKLDEAA--  405 (484)
T ss_pred             CCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHHHHHH------HHHhccC-CCCEEEEeCCCCcc--
Confidence            35789999994332211   1111111   233778889874 3222222      2222222 23456789999542  


Q ss_pred             ccCHHHHHHHHHHcCCCEEEEecCCCCCH
Q 028792          130 VVSYETAKAFADEIGIPFMETSAKSATNV  158 (203)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  158 (203)
                        ..=.+..+....++++..++  +|++|
T Consensus       406 --~~G~~l~i~~~~~lPI~yvt--~GQ~V  430 (484)
T PRK06995        406 --SLGGALDVVIRYKLPLHYVS--NGQRV  430 (484)
T ss_pred             --cchHHHHHHHHHCCCeEEEe--cCCCC
Confidence              23445666677788776664  35666

>PRK08118 topology modulation protein; Reviewed

Probab=97.56  E-value=6.9e-05  Score=53.06  Aligned_cols=23  Identities=39%  Similarity=0.666  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~   31 (203)
                      .+|+|+|++|||||||.+.|...
T Consensus         2 ~rI~I~G~~GsGKSTlak~L~~~   24 (167)
T PRK08118          2 KKIILIGSGGSGKSTLARQLGEK   24 (167)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            37999999999999999999853

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.54  E-value=0.0014  Score=52.55  Aligned_cols=90  Identities=14%  Similarity=0.110  Sum_probs=49.3

Q ss_pred             EEEEEEeCCChhhhch----hhhccccC---CcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc
Q 028792           57 IKLQIWDTAGQERFRT----ITSSYYRG---AHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANK  129 (203)
Q Consensus        57 ~~~~i~D~~g~~~~~~----~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~  129 (203)
                      ..+.++|++|......    ....++..   ..-.++|+|++...  ..+...   +..+... .+--++++|.|-..  
T Consensus       255 ~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~--~~~~~~---~~~~~~~-~~~~~I~TKlDet~--  326 (388)
T PRK12723        255 FDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKT--SDVKEI---FHQFSPF-SYKTVIFTKLDETT--  326 (388)
T ss_pred             CCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCH--HHHHHH---HHHhcCC-CCCEEEEEeccCCC--
Confidence            5688999999543221    11222222   23588999998643  222332   2333221 23467899999543  


Q ss_pred             ccCHHHHHHHHHHcCCCEEEEecCCCCCH
Q 028792          130 VVSYETAKAFADEIGIPFMETSAKSATNV  158 (203)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  158 (203)
                        ..=.+..+....+.|+..++  +|+++
T Consensus       327 --~~G~~l~~~~~~~~Pi~yit--~Gq~v  351 (388)
T PRK12723        327 --CVGNLISLIYEMRKEVSYVT--DGQIV  351 (388)
T ss_pred             --cchHHHHHHHHHCCCEEEEe--CCCCC
Confidence              22335556666777765554  35555

>PRK07261 topology modulation protein; Provisional

Probab=97.53  E-value=7.3e-05  Score=53.17  Aligned_cols=23  Identities=39%  Similarity=0.638  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~   31 (203)
                      .+|+|+|++|+|||||.+.|...
T Consensus         1 ~ri~i~G~~GsGKSTla~~l~~~   23 (171)
T PRK07261          1 MKIAIIGYSGSGKSTLARKLSQH   23 (171)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHH
Confidence            37999999999999999998743

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=97.51  E-value=8e-05  Score=51.06  Aligned_cols=20  Identities=45%  Similarity=0.704  Sum_probs=18.6

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q 028792           11 LLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        11 i~i~G~~~~GKSsli~~l~~   30 (203)
                      |+++|+||||||||++.|..
T Consensus         2 ii~~G~pgsGKSt~a~~l~~   21 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAK   21 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999984

...

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.49  E-value=0.0026  Score=48.56  Aligned_cols=133  Identities=19%  Similarity=0.191  Sum_probs=69.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCC-----------CC----------CccccceeeEEEE----EE------ECCeEE
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDSYL-----------ES----------YISTIGVDFKIRT----VE------QDGKTI   57 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~~~-----------~~----------~~~~~~~~~~~~~----~~------~~~~~~   57 (203)
                      -+++++|++|+||||++..+...-..           ..          +....+.++....    +.      .....+
T Consensus        76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~  155 (270)
T PRK06731         76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARV  155 (270)
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCCC
Confidence            58999999999999999887532100           00          0000111111000    00      011135


Q ss_pred             EEEEEeCCChhhhchh----hhccc--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc
Q 028792           58 KLQIWDTAGQERFRTI----TSSYY--RGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVV  131 (203)
Q Consensus        58 ~~~i~D~~g~~~~~~~----~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~  131 (203)
                      .+.++|++|.......    +..++  ...+-+++|+|++...  .++..+...+.   . -.+--++++|.|-...   
T Consensus       156 D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~--~d~~~~~~~f~---~-~~~~~~I~TKlDet~~---  226 (270)
T PRK06731        156 DYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFK---D-IHIDGIVFTKFDETAS---  226 (270)
T ss_pred             CEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH--HHHHHHHHHhC---C-CCCCEEEEEeecCCCC---
Confidence            7889999996532211    11222  2456789999986322  12223322222   2 1234678999996432   


Q ss_pred             CHHHHHHHHHHcCCCEEEEe
Q 028792          132 SYETAKAFADEIGIPFMETS  151 (203)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~S  151 (203)
                       .=.+..+....+.|+..++
T Consensus       227 -~G~~l~~~~~~~~Pi~~it  245 (270)
T PRK06731        227 -SGELLKIPAVSSAPIVLMT  245 (270)
T ss_pred             -ccHHHHHHHHHCcCEEEEe
Confidence             2235555666777766654

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=97.49  E-value=0.0012  Score=55.02  Aligned_cols=22  Identities=41%  Similarity=0.588  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~   31 (203)
                      =+++.||+|+||||.++.|...
T Consensus        47 iLlLtGP~G~GKtttv~~La~e   68 (519)
T PF03215_consen   47 ILLLTGPSGCGKTTTVKVLAKE   68 (519)
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            3577999999999999998753

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.47  E-value=0.00013  Score=42.34  Aligned_cols=21  Identities=38%  Similarity=0.498  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028792           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~   30 (203)
                      ..+|.|+.|+|||||+.++..
T Consensus        25 ~tli~G~nGsGKSTllDAi~~   45 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQT   45 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            389999999999999998763

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=97.46  E-value=0.0032  Score=45.00  Aligned_cols=23  Identities=22%  Similarity=0.381  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~   32 (203)
                      .++++|+.|+|||||++.+.+-.
T Consensus        27 ~~~l~G~nGsGKSTLl~~l~Gl~   49 (177)
T cd03222          27 VIGIVGPNGTGKTTAVKILAGQL   49 (177)
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            57899999999999999998754

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=97.45  E-value=8.3e-05  Score=52.38  Aligned_cols=22  Identities=23%  Similarity=0.531  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~   31 (203)
                      ||+|+|.+++|||||++.|...
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHc
Confidence            7999999999999999999854

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=97.40  E-value=0.00064  Score=46.04  Aligned_cols=23  Identities=35%  Similarity=0.517  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~   32 (203)
                      -|++.|+.|+|||||++.+...-
T Consensus        24 ~i~l~G~lGaGKTtl~~~l~~~l   46 (133)
T TIGR00150        24 VVLLKGDLGAGKTTLVQGLLQGL   46 (133)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHc
Confidence            58899999999999999998643

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=97.37  E-value=0.00011  Score=52.21  Aligned_cols=24  Identities=42%  Similarity=0.668  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCC
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~   32 (203)
                      .-+++.||+|+|||||++.|+...
T Consensus         5 ~l~vlsgPSG~GKsTl~k~L~~~~   28 (191)
T COG0194           5 LLIVLSGPSGVGKSTLVKALLEDD   28 (191)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhc
Confidence            457899999999999999999765

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.37  E-value=0.00018  Score=42.97  Aligned_cols=21  Identities=33%  Similarity=0.620  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 028792           11 LLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        11 i~i~G~~~~GKSsli~~l~~~   31 (203)
                      |++.|++|+||||+.+.|...
T Consensus         2 i~i~G~~gsGKst~~~~l~~~   22 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQ   22 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            688999999999999999864

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>KOG2423 consensus Nucleolar GTPase [General function prediction only]

Probab=97.36  E-value=7.4e-05  Score=58.79  Aligned_cols=84  Identities=17%  Similarity=0.155  Sum_probs=49.1

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhc--hhhhccccCCc
Q 028792            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR--TITSSYYRGAH   82 (203)
Q Consensus         5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--~~~~~~~~~~d   82 (203)
                      +...+.|.++|.|++||||+||+|-....-... |..+.+-.+..+...   -+|-++|+||.--..  ......+   -
T Consensus       304 dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvA-PIpGETKVWQYItLm---krIfLIDcPGvVyps~dset~ivL---k  376 (572)
T KOG2423|consen  304 DKKQISVGFIGYPNVGKSSIINTLRKKKVCKVA-PIPGETKVWQYITLM---KRIFLIDCPGVVYPSSDSETDIVL---K  376 (572)
T ss_pred             CccceeeeeecCCCCchHHHHHHHhhccccccc-CCCCcchHHHHHHHH---hceeEecCCCccCCCCCchHHHHh---h
Confidence            446789999999999999999999876543221 222211222222211   357799999943111  1122222   3


Q ss_pred             EEEEEEeCCChhh
Q 028792           83 GIIVVYDVTDQES   95 (203)
Q Consensus        83 ~~i~v~d~~~~~s   95 (203)
                      +++=|-.+.+++.
T Consensus       377 GvVRVenv~~pe~  389 (572)
T KOG2423|consen  377 GVVRVENVKNPED  389 (572)
T ss_pred             ceeeeeecCCHHH
Confidence            5666777777764

>PRK14737 gmk guanylate kinase; Provisional

Probab=97.34  E-value=0.00018  Score=51.84  Aligned_cols=24  Identities=17%  Similarity=0.324  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCC
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~   32 (203)
                      .=|+|+|++|||||||+++|....
T Consensus         5 ~~ivl~GpsG~GK~tl~~~l~~~~   28 (186)
T PRK14737          5 KLFIISSVAGGGKSTIIQALLEEH   28 (186)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhcC
Confidence            348999999999999999998643

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=97.34  E-value=0.0005  Score=48.89  Aligned_cols=45  Identities=29%  Similarity=0.223  Sum_probs=28.4

Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 028792           82 HGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN  128 (203)
Q Consensus        82 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~  128 (203)
                      |++++|+|+.++.+-. -..+.+.+. ....+.|+++|+||+|+.+.
T Consensus         1 DvVl~VvDar~p~~~~-~~~i~~~~~-l~~~~kp~IlVlNK~DL~~~   45 (172)
T cd04178           1 DVILEVLDARDPLGCR-CPQVEEAVL-QAGGNKKLVLVLNKIDLVPK   45 (172)
T ss_pred             CEEEEEEECCCCCCCC-CHHHHHHHH-hccCCCCEEEEEehhhcCCH
Confidence            7899999998764311 112222221 22335899999999999643

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=97.33  E-value=0.0013  Score=48.54  Aligned_cols=61  Identities=26%  Similarity=0.272  Sum_probs=35.0

Q ss_pred             EEEEeCC-ChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 028792           59 LQIWDTA-GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL  125 (203)
Q Consensus        59 ~~i~D~~-g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~  125 (203)
                      +.+.||- |.++   +-+.....+|.+|.|+|.+-+ ++...+.. ..+-.... -+++.+|+||.|-
T Consensus       136 ~VivDtEAGiEH---fgRg~~~~vD~vivVvDpS~~-sl~taeri-~~L~~elg-~k~i~~V~NKv~e  197 (255)
T COG3640         136 VVIVDTEAGIEH---FGRGTIEGVDLVIVVVDPSYK-SLRTAERI-KELAEELG-IKRIFVVLNKVDE  197 (255)
T ss_pred             EEEEecccchhh---hccccccCCCEEEEEeCCcHH-HHHHHHHH-HHHHHHhC-CceEEEEEeeccc
Confidence            4455553 3332   234456889999999998743 22222221 11211111 2789999999984

>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell

Probab=97.32  E-value=0.01  Score=42.06  Aligned_cols=84  Identities=8%  Similarity=0.038  Sum_probs=50.2

Q ss_pred             EEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHH
Q 028792           58 KLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAK  137 (203)
Q Consensus        58 ~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~  137 (203)
                      .+.++|+|+....  .....+..+|.++++++.+. .++..+..+++.+...  ......+++|+.+....  ...+...
T Consensus        64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~~--~~~~~~iv~N~~~~~~~--~~~~~~~  136 (179)
T cd02036          64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEI-SSLRDADRVKGLLEAL--GIKVVGVIVNRVRPDMV--EGGDMVE  136 (179)
T ss_pred             CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHHc--CCceEEEEEeCCccccc--chhhHHH
Confidence            5889999975332  23445688999999998764 3444444555544432  12356788999985432  1222234


Q ss_pred             HHHHHcCCCEE
Q 028792          138 AFADEIGIPFM  148 (203)
Q Consensus       138 ~~~~~~~~~~~  148 (203)
                      .+.+..+.+++
T Consensus       137 ~~~~~~~~~v~  147 (179)
T cd02036         137 DIEEILGVPLL  147 (179)
T ss_pred             HHHHHhCCCEE
Confidence            45555666655

The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.

>KOG1533 consensus Predicted GTPase [General function prediction only]

Probab=97.29  E-value=0.00036  Score=51.32  Aligned_cols=68  Identities=16%  Similarity=0.204  Sum_probs=36.5

Q ss_pred             EEEEEeCCChhhh----chhh--hccccCCcE---EEEEEeC---CChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 028792           58 KLQIWDTAGQERF----RTIT--SSYYRGAHG---IIVVYDV---TDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL  125 (203)
Q Consensus        58 ~~~i~D~~g~~~~----~~~~--~~~~~~~d~---~i~v~d~---~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~  125 (203)
                      ...++|+||+-++    ...+  ...+..-|.   ++-++|.   ++|..|-  ..++..+.....-..|.+=|+.|+|+
T Consensus        98 ~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~i--S~lL~sl~tMl~melphVNvlSK~Dl  175 (290)
T KOG1533|consen   98 HYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFI--SSLLVSLATMLHMELPHVNVLSKADL  175 (290)
T ss_pred             cEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHH--HHHHHHHHHHHhhcccchhhhhHhHH
Confidence            4679999997543    1111  112233443   3334443   4565543  23333343333346788889999998


Q ss_pred             CC
Q 028792          126 TA  127 (203)
Q Consensus       126 ~~  127 (203)
                      ..
T Consensus       176 ~~  177 (290)
T KOG1533|consen  176 LK  177 (290)
T ss_pred             HH
Confidence            64

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=97.29  E-value=0.00024  Score=48.32  Aligned_cols=23  Identities=35%  Similarity=0.465  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~   32 (203)
                      .++|+|++|+|||||++.|.+..
T Consensus        13 ~~~i~G~nGsGKStLl~~l~g~~   35 (137)
T PF00005_consen   13 IVAIVGPNGSGKSTLLKALAGLL   35 (137)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEEccCCCccccceeeecccc
Confidence            57899999999999999998754

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>cd03110 Fer4_NifH_child This protein family's function is unkown

Probab=97.27  E-value=0.0036  Score=44.69  Aligned_cols=85  Identities=20%  Similarity=0.284  Sum_probs=58.3

Q ss_pred             EEEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHH
Q 028792           56 TIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYET  135 (203)
Q Consensus        56 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~  135 (203)
                      .+.+.++|+|+...  ......+..+|.+++++..+. .+...+..+++.+...   +.|+.+|+|+.|....   ..++
T Consensus        92 ~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~-~~~~~~~~~~~~l~~~---~~~~~vV~N~~~~~~~---~~~~  162 (179)
T cd03110          92 GAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTP-SGLHDLERAVELVRHF---GIPVGVVINKYDLNDE---IAEE  162 (179)
T ss_pred             CCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCc-ccHHHHHHHHHHHHHc---CCCEEEEEeCCCCCcc---hHHH
Confidence            46789999997532  233456688999999998873 3555566665555443   4678899999986432   3456


Q ss_pred             HHHHHHHcCCCEEE
Q 028792          136 AKAFADEIGIPFME  149 (203)
Q Consensus       136 ~~~~~~~~~~~~~~  149 (203)
                      ..++.+..+++++-
T Consensus       163 ~~~~~~~~~~~vl~  176 (179)
T cd03110         163 IEDYCEEEGIPILG  176 (179)
T ss_pred             HHHHHHHcCCCeEE
Confidence            67778888877653

It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.

>PRK06217 hypothetical protein; Validated

Probab=97.25  E-value=0.00027  Score=50.83  Aligned_cols=23  Identities=26%  Similarity=0.491  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~   31 (203)
                      .+|+|+|.+|||||||.++|...
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~   24 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAER   24 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999999753

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.25  E-value=0.00035  Score=50.87  Aligned_cols=23  Identities=39%  Similarity=0.515  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~   32 (203)
                      .++|+||+|||||||++.+-.-+
T Consensus        30 vv~iiGpSGSGKSTlLRclN~LE   52 (240)
T COG1126          30 VVVIIGPSGSGKSTLLRCLNGLE   52 (240)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCc
Confidence            47899999999999999997755

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=97.23  E-value=0.00027  Score=47.35  Aligned_cols=21  Identities=24%  Similarity=0.409  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 028792           11 LLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        11 i~i~G~~~~GKSsli~~l~~~   31 (203)
                      |+|.|.+||||||+++.|...
T Consensus         1 I~i~G~~GsGKtTia~~L~~~   21 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAER   21 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999999754

...

>PRK03839 putative kinase; Provisional

Probab=97.23  E-value=0.00027  Score=50.60  Aligned_cols=22  Identities=27%  Similarity=0.493  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~   31 (203)
                      +|+++|+|||||||+.+.|...
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~   23 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEK   23 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999998753

>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]

Probab=97.23  E-value=0.0016  Score=53.09  Aligned_cols=128  Identities=20%  Similarity=0.191  Sum_probs=74.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCC------------CC----CCccccceeeE--EEEEE------------ECCeEEE
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDSY------------LE----SYISTIGVDFK--IRTVE------------QDGKTIK   58 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~~------------~~----~~~~~~~~~~~--~~~~~------------~~~~~~~   58 (203)
                      -++-++..-.-|||||-..|....-            ..    +....++....  +..+.            -++..+-
T Consensus        20 RNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~FL   99 (842)
T KOG0469|consen   20 RNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNGFL   99 (842)
T ss_pred             ccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCccee
Confidence            4566788888999999999864211            11    11111111111  11111            1333567


Q ss_pred             EEEEeCCChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC-CcccCHHHHH
Q 028792           59 LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTA-NKVVSYETAK  137 (203)
Q Consensus        59 ~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~-~~~~~~~~~~  137 (203)
                      ++++|.||+-.+.+.....++-.|+.++|+|..+.--...-.-+.+.+..    .+.-++++||+|-.- +-+...+++-
T Consensus       100 iNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~E----RIkPvlv~NK~DRAlLELq~~~EeLy  175 (842)
T KOG0469|consen  100 INLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAE----RIKPVLVMNKMDRALLELQLSQEELY  175 (842)
T ss_pred             EEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHh----hccceEEeehhhHHHHhhcCCHHHHH
Confidence            89999999999999999999999999999998764322111222222322    223367899999431 1234444444


Q ss_pred             HHH
Q 028792          138 AFA  140 (203)
Q Consensus       138 ~~~  140 (203)
                      +.+
T Consensus       176 qtf  178 (842)
T KOG0469|consen  176 QTF  178 (842)
T ss_pred             HHH
Confidence            433

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=97.22  E-value=0.0004  Score=47.51  Aligned_cols=21  Identities=52%  Similarity=0.844  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 028792           11 LLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        11 i~i~G~~~~GKSsli~~l~~~   31 (203)
                      |+|+|++|+|||||++.|...
T Consensus         2 i~i~GpsGsGKstl~~~L~~~   22 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEE   22 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhc
Confidence            689999999999999999864

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.20  E-value=0.00029  Score=47.36  Aligned_cols=21  Identities=38%  Similarity=0.553  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 028792           11 LLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        11 i~i~G~~~~GKSsli~~l~~~   31 (203)
                      |++.|+||+|||++++.+...
T Consensus         1 ill~G~~G~GKT~l~~~la~~   21 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQY   21 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHH
T ss_pred             CEEECcCCCCeeHHHHHHHhh
Confidence            689999999999999999864

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop

Probab=97.20  E-value=0.0011  Score=44.30  Aligned_cols=21  Identities=38%  Similarity=0.615  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028792           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~   30 (203)
                      -|++-|+-|+|||||++.+..
T Consensus        17 vi~L~GdLGaGKTtf~r~l~~   37 (123)
T PF02367_consen   17 VILLSGDLGAGKTTFVRGLAR   37 (123)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999999974

They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.

>PRK14738 gmk guanylate kinase; Provisional

Probab=97.20  E-value=0.00043  Score=50.77  Aligned_cols=26  Identities=31%  Similarity=0.532  Sum_probs=21.7

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcC
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~   31 (203)
                      .+..-|+|+|++|+|||||++.|...
T Consensus        11 ~~~~~ivi~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738         11 AKPLLVVISGPSGVGKDAVLARMRER   36 (206)
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence            34566889999999999999999753

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.19  E-value=0.00041  Score=51.20  Aligned_cols=23  Identities=35%  Similarity=0.440  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~   32 (203)
                      -++|+|++|||||||++-+-+-.
T Consensus        33 ~vaI~GpSGSGKSTLLniig~ld   55 (226)
T COG1136          33 FVAIVGPSGSGKSTLLNLLGGLD   55 (226)
T ss_pred             EEEEECCCCCCHHHHHHHHhccc
Confidence            37899999999999999987644

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.19  E-value=0.00036  Score=47.03  Aligned_cols=26  Identities=27%  Similarity=0.363  Sum_probs=22.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCC
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDSYL   34 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~~~   34 (203)
                      -.++++|++|+|||++++.+...-..
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~~~~   28 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARELGP   28 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhccCC
Confidence            36899999999999999999875543

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>cd01131 PilT Pilus retraction ATPase PilT

Probab=97.18  E-value=0.0016  Score=47.40  Aligned_cols=22  Identities=36%  Similarity=0.505  Sum_probs=19.4

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCC
Q 028792           11 LLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        11 i~i~G~~~~GKSsli~~l~~~~   32 (203)
                      |+|+|++|+||||+++.|+...
T Consensus         4 ilI~GptGSGKTTll~~ll~~~   25 (198)
T cd01131           4 VLVTGPTGSGKSTTLAAMIDYI   25 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7899999999999999987643

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PRK10646 ADP-binding protein; Provisional

Probab=97.17  E-value=0.0027  Score=44.06  Aligned_cols=22  Identities=32%  Similarity=0.519  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~   31 (203)
                      -|++-|+-|+|||||++.+...
T Consensus        30 vi~L~GdLGaGKTtf~rgl~~~   51 (153)
T PRK10646         30 VIYLYGDLGAGKTTFSRGFLQA   51 (153)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3789999999999999999753

>PRK14530 adenylate kinase; Provisional

Probab=97.16  E-value=0.00037  Score=51.46  Aligned_cols=22  Identities=32%  Similarity=0.564  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      .+|+|+|+|||||||+.+.|..
T Consensus         4 ~~I~i~G~pGsGKsT~~~~La~   25 (215)
T PRK14530          4 PRILLLGAPGAGKGTQSSNLAE   25 (215)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999999863

>COG1161 Predicted GTPases [General function prediction only]

Probab=97.14  E-value=0.001  Score=52.14  Aligned_cols=95  Identities=26%  Similarity=0.228  Sum_probs=59.6

Q ss_pred             eCCChh-hhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH
Q 028792           63 DTAGQE-RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFAD  141 (203)
Q Consensus        63 D~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~  141 (203)
                      +.||+. .+.......+..+|+++.|+|+.+|.+-     .-..+..+.. +.|.++|+||.|+.+... ..+=...+..
T Consensus        16 ~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s-----~~~~l~~~v~-~k~~i~vlNK~DL~~~~~-~~~W~~~~~~   88 (322)
T COG1161          16 WFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGT-----RNPELERIVK-EKPKLLVLNKADLAPKEV-TKKWKKYFKK   88 (322)
T ss_pred             CCCCchHHHHHHHHHhcccCCEEEEEEeccccccc-----cCccHHHHHc-cCCcEEEEehhhcCCHHH-HHHHHHHHHh
Confidence            446643 4455566778999999999999988751     1112222222 355599999999976533 1222233333


Q ss_pred             HcCCCEEEEecCCCCCHHHHHHH
Q 028792          142 EIGIPFMETSAKSATNVEQAFMA  164 (203)
Q Consensus       142 ~~~~~~~~~Sa~~~~gi~~~~~~  164 (203)
                      ..+...+.+++..+.+...+...
T Consensus        89 ~~~~~~~~v~~~~~~~~~~i~~~  111 (322)
T COG1161          89 EEGIKPIFVSAKSRQGGKKIRKA  111 (322)
T ss_pred             cCCCccEEEEeecccCccchHHH
Confidence            43677888888887776666643

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=97.13  E-value=0.00039  Score=50.10  Aligned_cols=22  Identities=36%  Similarity=0.588  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~   31 (203)
                      .++|+|++|+|||||++.|...
T Consensus         4 ~i~l~G~sGsGKsTl~~~l~~~   25 (186)
T PRK10078          4 LIWLMGPSGSGKDSLLAALRQR   25 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            5899999999999999999764

>PRK04195 replication factor C large subunit; Provisional

Probab=97.12  E-value=0.011  Score=49.01  Aligned_cols=24  Identities=46%  Similarity=0.625  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCC
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~   32 (203)
                      -.++|.|+||+||||+++.|...-
T Consensus        40 ~~lLL~GppG~GKTtla~ala~el   63 (482)
T PRK04195         40 KALLLYGPPGVGKTSLAHALANDY   63 (482)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHc
Confidence            468999999999999999997643

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=97.12  E-value=0.00044  Score=47.48  Aligned_cols=22  Identities=18%  Similarity=0.501  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~   31 (203)
                      .|.|+|+.|+|||||++.|++.
T Consensus         2 vv~VvG~~~sGKTTl~~~Li~~   23 (140)
T PF03205_consen    2 VVQVVGPKNSGKTTLIRKLINE   23 (140)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999864

>COG0802 Predicted ATPase or kinase [General function prediction only]

Probab=97.11  E-value=0.002  Score=44.18  Aligned_cols=23  Identities=39%  Similarity=0.544  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~   32 (203)
                      -|++-|+-|+|||||.+.+...-
T Consensus        27 Vv~L~GdLGAGKTtf~rgi~~~L   49 (149)
T COG0802          27 VVLLSGDLGAGKTTLVRGIAKGL   49 (149)
T ss_pred             EEEEEcCCcCChHHHHHHHHHHc
Confidence            47889999999999999998533

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=97.11  E-value=0.00042  Score=49.54  Aligned_cols=22  Identities=32%  Similarity=0.439  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~   31 (203)
                      -++|+|++|||||||++.|...
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~~   24 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARAR   24 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999998754

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PRK01889 GTPase RsgA; Reviewed

Probab=97.11  E-value=0.00057  Score=54.34  Aligned_cols=23  Identities=39%  Similarity=0.642  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~   32 (203)
                      .++++|.+|+|||||++.|.+..
T Consensus       197 ~~~lvG~sgvGKStLin~L~g~~  219 (356)
T PRK01889        197 TVALLGSSGVGKSTLVNALLGEE  219 (356)
T ss_pred             EEEEECCCCccHHHHHHHHHHhc
Confidence            68999999999999999998644

>PRK14531 adenylate kinase; Provisional

Probab=97.10  E-value=0.00044  Score=49.68  Aligned_cols=23  Identities=30%  Similarity=0.528  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      ..+|+++|+|||||||+.+.|..
T Consensus         2 ~~~i~i~G~pGsGKsT~~~~la~   24 (183)
T PRK14531          2 KQRLLFLGPPGAGKGTQAARLCA   24 (183)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            45899999999999999999864

>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]

Probab=97.10  E-value=0.00036  Score=47.72  Aligned_cols=25  Identities=36%  Similarity=0.490  Sum_probs=22.7

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhc
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      ....+|+|.|.||+|||||..+|..
T Consensus         5 r~~PNILvtGTPG~GKstl~~~lae   29 (176)
T KOG3347|consen    5 RERPNILVTGTPGTGKSTLAERLAE   29 (176)
T ss_pred             hcCCCEEEeCCCCCCchhHHHHHHH
Confidence            5678999999999999999999974

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=97.09  E-value=0.00062  Score=48.31  Aligned_cols=25  Identities=28%  Similarity=0.337  Sum_probs=21.4

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcC
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~~   31 (203)
                      +..-+.|+|++|||||||+++|...
T Consensus         5 ~~~ii~ivG~sgsGKTTLi~~li~~   29 (173)
T PRK10751          5 MIPLLAIAAWSGTGKTTLLKKLIPA   29 (173)
T ss_pred             CceEEEEECCCCChHHHHHHHHHHH
Confidence            3446899999999999999999864

>PRK14532 adenylate kinase; Provisional

Probab=97.09  E-value=0.00046  Score=49.75  Aligned_cols=22  Identities=27%  Similarity=0.537  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      ++|+++|+|||||||+..+|..
T Consensus         1 ~~i~~~G~pGsGKsT~a~~la~   22 (188)
T PRK14532          1 MNLILFGPPAAGKGTQAKRLVE   22 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999999974

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=97.08  E-value=0.00045  Score=51.78  Aligned_cols=21  Identities=43%  Similarity=0.534  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028792           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~   30 (203)
                      -++++||.|+|||||++.+++
T Consensus        32 ~~~iiGPNGaGKSTLlK~iLG   52 (254)
T COG1121          32 ITALIGPNGAGKSTLLKAILG   52 (254)
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            368999999999999999987

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=97.08  E-value=0.00045  Score=49.62  Aligned_cols=21  Identities=19%  Similarity=0.408  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 028792            9 FKLLLIGDSGVGKSCLLLRFA   29 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~   29 (203)
                      .-|+|+|++||||||+++.|.
T Consensus         4 ~ii~i~G~~GsGKsTl~~~l~   24 (188)
T TIGR01360         4 KIIFIVGGPGSGKGTQCEKIV   24 (188)
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            468899999999999999997

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]

Probab=97.07  E-value=0.00027  Score=60.18  Aligned_cols=70  Identities=16%  Similarity=0.199  Sum_probs=46.4

Q ss_pred             EEEEEEeCCChh-------------hhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCC
Q 028792           57 IKLQIWDTAGQE-------------RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKC  123 (203)
Q Consensus        57 ~~~~i~D~~g~~-------------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~  123 (203)
                      ..++++|+||..             +...+...++...+.+|+.+...+-+-  ....++.........+..++.|++|.
T Consensus       132 ~~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~~~~iILav~~an~d~--ats~alkiarevDp~g~RTigvitK~  209 (657)
T KOG0446|consen  132 ANLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKPNRIILAVTPANSDI--ATSPALVVAREVDPGGSRTLEVITKF  209 (657)
T ss_pred             chhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccccchhhhhccchhhhh--hcCHHHHHHHhhCCCccchhHHhhhH
Confidence            357899999932             345567778888899999888765221  11234444555555667788888888


Q ss_pred             CCCCC
Q 028792          124 DLTAN  128 (203)
Q Consensus       124 D~~~~  128 (203)
                      |+.+.
T Consensus       210 Dlmdk  214 (657)
T KOG0446|consen  210 DFMDK  214 (657)
T ss_pred             Hhhhc
Confidence            87654

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=97.07  E-value=0.00051  Score=51.27  Aligned_cols=25  Identities=32%  Similarity=0.553  Sum_probs=22.1

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcC
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~~   31 (203)
                      ..++++|+|++|||||+|+..|+..
T Consensus        12 ~~fr~viIG~sGSGKT~li~~lL~~   36 (241)
T PF04665_consen   12 DPFRMVIIGKSGSGKTTLIKSLLYY   36 (241)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHh
Confidence            4589999999999999999999853

This is thought to be an ATPase involved in viral DNA packaging [].

>PRK13949 shikimate kinase; Provisional

Probab=97.06  E-value=0.00054  Score=48.59  Aligned_cols=21  Identities=33%  Similarity=0.564  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028792           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~   30 (203)
                      +|+|+|++|+||||+.+.|..
T Consensus         3 ~I~liG~~GsGKstl~~~La~   23 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALAR   23 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999998864

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=97.06  E-value=0.00054  Score=49.39  Aligned_cols=23  Identities=30%  Similarity=0.440  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~   31 (203)
                      -.++|+|++|+|||||++.|.+-
T Consensus        26 ~~i~I~G~tGSGKTTll~aL~~~   48 (186)
T cd01130          26 KNILISGGTGSGKTTLLNALLAF   48 (186)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            46899999999999999999864

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>TIGR03263 guanyl_kin guanylate kinase

Probab=97.05  E-value=0.00052  Score=49.06  Aligned_cols=22  Identities=36%  Similarity=0.643  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~   31 (203)
                      -|+|+|++|||||||++.|...
T Consensus         3 ii~l~G~~GsGKsTl~~~L~~~   24 (180)
T TIGR03263         3 LIVISGPSGVGKSTLVKALLEE   24 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHcc
Confidence            4789999999999999999874

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=97.05  E-value=0.00054  Score=44.51  Aligned_cols=20  Identities=45%  Similarity=0.780  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 028792           10 KLLLIGDSGVGKSCLLLRFA   29 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~   29 (203)
                      -++++|++|+|||||++.+.
T Consensus        17 ~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          17 GVLITGDSGIGKTELALELI   36 (107)
T ss_pred             EEEEEcCCCCCHHHHHHHhh
Confidence            47999999999999999976

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PRK00625 shikimate kinase; Provisional

Probab=97.05  E-value=0.00054  Score=48.77  Aligned_cols=22  Identities=27%  Similarity=0.415  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      ++|+++|.|||||||+.+.|..
T Consensus         1 ~~I~LiG~pGsGKTT~~k~La~   22 (173)
T PRK00625          1 MQIFLCGLPTVGKTSFGKALAK   22 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999999864

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=97.05  E-value=0.0049  Score=47.39  Aligned_cols=106  Identities=18%  Similarity=0.236  Sum_probs=62.6

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChh---h-----------
Q 028792            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE---R-----------   69 (203)
Q Consensus         4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~---~-----------   69 (203)
                      +..+-..++++|++|-|||++++++.....+.. ....             ..+.+...+.|...   +           
T Consensus        57 ~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~-d~~~-------------~~~PVv~vq~P~~p~~~~~Y~~IL~~lga  122 (302)
T PF05621_consen   57 KRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQS-DEDA-------------ERIPVVYVQMPPEPDERRFYSAILEALGA  122 (302)
T ss_pred             cccCCCceEEecCCCCcHHHHHHHHHHHCCCCC-CCCC-------------ccccEEEEecCCCCChHHHHHHHHHHhCc
Confidence            445667899999999999999999986543221 1111             01233344444311   1           


Q ss_pred             ----------hchhhhccccCCcEEEEEEeCCCh---hhHHHHHHHHHHHHhhcC-CCCcEEEEEeCC
Q 028792           70 ----------FRTITSSYYRGAHGIIVVYDVTDQ---ESFNNVKQWLNEIDRYAS-ENVNKLLVGNKC  123 (203)
Q Consensus        70 ----------~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~  123 (203)
                                ........+.....=++++|--..   -+...-+..++.++...+ -.+|+|.+++.-
T Consensus       123 P~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~  190 (302)
T PF05621_consen  123 PYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTRE  190 (302)
T ss_pred             ccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHH
Confidence                      111223456777888888984321   133344556666666655 478999888653

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=97.04  E-value=0.013  Score=40.28  Aligned_cols=23  Identities=39%  Similarity=0.601  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~   32 (203)
                      .++++|++|+|||||++.+.+..
T Consensus        28 ~~~i~G~nGsGKStLl~~l~G~~   50 (144)
T cd03221          28 RIGLVGRNGAGKSTLLKLIAGEL   50 (144)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCC
Confidence            46899999999999999998754

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>TIGR00235 udk uridine kinase

Probab=97.03  E-value=0.0007  Score=49.65  Aligned_cols=25  Identities=20%  Similarity=0.240  Sum_probs=21.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcC
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~~   31 (203)
                      .-.-|+|+|++|||||||++.|.+.
T Consensus         5 ~g~vi~I~G~sGsGKSTl~~~l~~~   29 (207)
T TIGR00235         5 KGIIIGIGGGSGSGKTTVARKIYEQ   29 (207)
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHH
Confidence            4467999999999999999999753

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=97.03  E-value=0.00054  Score=51.58  Aligned_cols=20  Identities=40%  Similarity=0.534  Sum_probs=18.6

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q 028792           11 LLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        11 i~i~G~~~~GKSsli~~l~~   30 (203)
                      ++++|+.|+|||||++.+.+
T Consensus        31 ~~iiGpNG~GKSTLLk~l~g   50 (258)
T COG1120          31 TGILGPNGSGKSTLLKCLAG   50 (258)
T ss_pred             EEEECCCCCCHHHHHHHHhc
Confidence            68999999999999999976

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=97.02  E-value=0.00056  Score=47.97  Aligned_cols=21  Identities=24%  Similarity=0.453  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 028792            9 FKLLLIGDSGVGKSCLLLRFA   29 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~   29 (203)
                      ++|+|.|.||+||||+.++|-
T Consensus         1 m~I~ITGTPGvGKTT~~~~L~   21 (180)
T COG1936           1 MLIAITGTPGVGKTTVCKLLR   21 (180)
T ss_pred             CeEEEeCCCCCchHHHHHHHH
Confidence            479999999999999999997

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=97.02  E-value=0.00064  Score=48.54  Aligned_cols=21  Identities=33%  Similarity=0.314  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028792           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~   30 (203)
                      .++++|+.|+|||||++.++.
T Consensus        23 ~~~l~G~nG~GKSTLl~~il~   43 (176)
T cd03238          23 LVVVTGVSGSGKSTLVNEGLY   43 (176)
T ss_pred             EEEEECCCCCCHHHHHHHHhh
Confidence            689999999999999998863

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=97.01  E-value=0.00066  Score=46.36  Aligned_cols=21  Identities=38%  Similarity=0.653  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028792           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~   30 (203)
                      .|+++|++|+|||+|++.+..
T Consensus         1 ~vlL~G~~G~GKt~l~~~la~   21 (139)
T PF07728_consen    1 PVLLVGPPGTGKTTLARELAA   21 (139)
T ss_dssp             EEEEEESSSSSHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            389999999999999998874

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.00  E-value=0.00079  Score=50.05  Aligned_cols=22  Identities=41%  Similarity=0.542  Sum_probs=19.5

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCC
Q 028792           11 LLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        11 i~i~G~~~~GKSsli~~l~~~~   32 (203)
                      |.++|++|+|||||++.+.+-.
T Consensus        32 vsilGpSGcGKSTLLriiAGL~   53 (248)
T COG1116          32 VAILGPSGCGKSTLLRLIAGLE   53 (248)
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            6899999999999999997643

>KOG3929 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.99  E-value=0.00039  Score=51.83  Aligned_cols=87  Identities=17%  Similarity=0.324  Sum_probs=54.1

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECC-eEEEEEEEeCCChhhhchhhhccccC----
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDG-KTIKLQIWDTAGQERFRTITSSYYRG----   80 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~----   80 (203)
                      ..+..|++.|..+  +|++|++.+.+...+. .++...+|....-...+ ..-..++|+.+|......+..--+..    
T Consensus        43 ~~E~~I~~~Gn~~--~tt~I~~~FdR~e~~~-~ptlaLEYtygRR~~g~~~kdiaN~WELGgg~~~~~LLsVPit~~~l~  119 (363)
T KOG3929|consen   43 KFEFFIGSKGNGG--KTTIILRCFDRDEPPK-PPTLALEYTYGRRAKGHNPKDIANFWELGGGTSLLDLLSVPITGDTLR  119 (363)
T ss_pred             cceeEEEEecCCc--eeEeehhhcCcccCCC-CCceeeeeehhhhccCCCchhHHHHHHhcCCccHHHHhcCcccccchh
Confidence            4567888888754  5999998887654433 35555555554433333 22335799999976654443332222    


Q ss_pred             CcEEEEEEeCCChhh
Q 028792           81 AHGIIVVYDVTDQES   95 (203)
Q Consensus        81 ~d~~i~v~d~~~~~s   95 (203)
                      .-.+|++.|.+.++.
T Consensus       120 ~~slIL~LDls~p~~  134 (363)
T KOG3929|consen  120 TFSLILVLDLSKPND  134 (363)
T ss_pred             hhhheeeeecCChHH
Confidence            337899999998763

>PRK02496 adk adenylate kinase; Provisional

Probab=96.98  E-value=0.00071  Score=48.60  Aligned_cols=22  Identities=27%  Similarity=0.590  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      ++|+|+|+|||||||+.+.|..
T Consensus         2 ~~i~i~G~pGsGKst~a~~la~   23 (184)
T PRK02496          2 TRLIFLGPPGAGKGTQAVVLAE   23 (184)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999864

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.97  E-value=0.0023  Score=50.58  Aligned_cols=23  Identities=22%  Similarity=0.349  Sum_probs=19.1

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHh
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFA   29 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~   29 (203)
                      +.--|.++|-.|+||||.+-.|.
T Consensus       100 kpsVimfVGLqG~GKTTtc~KlA  122 (483)
T KOG0780|consen  100 KPSVIMFVGLQGSGKTTTCTKLA  122 (483)
T ss_pred             CCcEEEEEeccCCCcceeHHHHH
Confidence            34568899999999999988874

>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=96.97  E-value=0.0077  Score=49.74  Aligned_cols=21  Identities=43%  Similarity=0.564  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028792           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~   30 (203)
                      -+++.||+|+||||.++.|..
T Consensus       112 iLLltGPsGcGKSTtvkvLsk  132 (634)
T KOG1970|consen  112 ILLLTGPSGCGKSTTVKVLSK  132 (634)
T ss_pred             EEEEeCCCCCCchhHHHHHHH
Confidence            367899999999999999874

>PTZ00088 adenylate kinase 1; Provisional

Probab=96.96  E-value=0.00069  Score=50.46  Aligned_cols=23  Identities=30%  Similarity=0.553  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      .++|+|+|+|||||||+.+.|..
T Consensus         6 ~mrIvl~G~PGsGK~T~a~~La~   28 (229)
T PTZ00088          6 PLKIVLFGAPGVGKGTFAEILSK   28 (229)
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            37899999999999999999864

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=96.95  E-value=0.0013  Score=50.90  Aligned_cols=144  Identities=22%  Similarity=0.284  Sum_probs=75.7

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcC----CCCCC-----------------CccccceeeEEEE-------EEE-----
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADD----SYLES-----------------YISTIGVDFKIRT-------VEQ-----   52 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~----~~~~~-----------------~~~~~~~~~~~~~-------~~~-----   52 (203)
                      .+.+-|+++|-.|+||||.|-+|...    .....                 .....+.++....       +.+     
T Consensus       137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~  216 (340)
T COG0552         137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQA  216 (340)
T ss_pred             CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHH
Confidence            45788999999999999999887531    10000                 0000011111100       000     


Q ss_pred             -CCeEEEEEEEeCCChhhhch-------hhhccccC-----CcEEEEEEeCCC-hhhHHHHHHHHHHHHhhcCCCCcEEE
Q 028792           53 -DGKTIKLQIWDTAGQERFRT-------ITSSYYRG-----AHGIIVVYDVTD-QESFNNVKQWLNEIDRYASENVNKLL  118 (203)
Q Consensus        53 -~~~~~~~~i~D~~g~~~~~~-------~~~~~~~~-----~d~~i~v~d~~~-~~s~~~~~~~~~~l~~~~~~~~p~ii  118 (203)
                       ....+.+.++||.|.-+...       .....+..     .+=+++++|++- .+++...+.+-+.+    .   ---+
T Consensus       217 Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~eav----~---l~Gi  289 (340)
T COG0552         217 AKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEAV----G---LDGI  289 (340)
T ss_pred             HHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHHhc----C---CceE
Confidence             11235688999999432111       11222333     334888889875 44555555533322    1   2256


Q ss_pred             EEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHH
Q 028792          119 VGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAF  162 (203)
Q Consensus       119 v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~  162 (203)
                      +++|.|-...--.    +...+..+++|+..+-.  |++++++-
T Consensus       290 IlTKlDgtAKGG~----il~I~~~l~~PI~fiGv--GE~~~DL~  327 (340)
T COG0552         290 ILTKLDGTAKGGI----ILSIAYELGIPIKFIGV--GEGYDDLR  327 (340)
T ss_pred             EEEecccCCCcce----eeeHHHHhCCCEEEEeC--CCChhhcc
Confidence            7899995432221    33455677888766643  56666654

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=96.94  E-value=0.00066  Score=49.38  Aligned_cols=21  Identities=24%  Similarity=0.441  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 028792           11 LLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        11 i~i~G~~~~GKSsli~~l~~~   31 (203)
                      |.|.|++|||||||++.|...
T Consensus         2 igi~G~~GsGKSTl~~~l~~~   22 (198)
T cd02023           2 IGIAGGSGSGKTTVAEEIIEQ   22 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            689999999999999999763

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PRK08233 hypothetical protein; Provisional

Probab=96.94  E-value=0.00085  Score=47.92  Aligned_cols=24  Identities=25%  Similarity=0.263  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcC
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~~   31 (203)
                      .+-|+|.|.+|||||||.+.|...
T Consensus         3 ~~iI~I~G~~GsGKtTla~~L~~~   26 (182)
T PRK08233          3 TKIITIAAVSGGGKTTLTERLTHK   26 (182)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhh
Confidence            366888999999999999999753

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	203
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		4e-90
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		9e-89
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		2e-88
4fmc_B	171	Espg-Rab1 Complex Length = 171		3e-88
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		5e-88
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		4e-87
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		6e-86
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		3e-85
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		3e-85
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		2e-84
2bcg_Y	206	Structure Of Doubly Prenylated Ypt1:gdi Complex Len		2e-79
1ukv_Y	206	Structure Of Rabgdp-Dissociation Inhibitor In Compl		1e-78
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		1e-76
1yzn_A	185	Gppnhp-Bound Ypt1p Gtpase Length = 185		2e-73
4fmc_F	117	Espg-Rab1 Complex Length = 117		5e-62
2fu5_C	183	Structure Of Rab8 In Complex With Mss4 Length = 183		1e-60
3qbt_A	174	Crystal Structure Of Ocrl1 540-678 In Complex With		9e-60
3tw8_B	181	Gef Domain Of Dennd 1b In Complex With Rab Gtpase R		5e-56
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		4e-55
1g17_A	170	Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)		3e-54
1g16_A	170	Crystal Structure Of Sec4-Gdp Length = 170		1e-53
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		1e-53
2ocy_C	170	Complex Of The Guanine Exchange Factor Sec2p And Th		2e-53
2g6b_A	180	Crystal Structure Of Human Rab26 In Complex With A		4e-52
3rab_A	169	Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169		2e-50
3dz8_A	191	Crystal Structure Of Human Rab3b Gtpase Bound With		5e-50
2gf9_A	189	Crystal Structure Of Human Rab3d In Complex With Gd		2e-49
1zbd_A	203	Structural Basis Of Rab Effector Specificity: Cryst		6e-49
2a5j_A	191	Crystal Structure Of Human Rab2b Length = 191		3e-48
1z0a_A	174	Gdp-Bound Rab2a Gtpase Length = 174		4e-48
1oiv_A	191	X-Ray Structure Of The Small G Protein Rab11a In Co		2e-47
1yzk_A	184	Gppnhp Bound Rab11 Gtpase Length = 184		2e-46
1oiw_A	191	X-ray Structure Of The Small G Protein Rab11a In Co		2e-46
2hv8_A	172	Crystal Structure Of Gtp-Bound Rab11 In Complex Wit		2e-46
2f9l_A	199	3d Structure Of Inactive Human Rab11b Gtpase Length		4e-46
2ew1_A	201	Crystal Structure Of Rab30 In Complex With A Gtp An		5e-46
2gzd_A	173	Crystal Structure Of Rab11 In Complex With Rab11-Fi		6e-46
2hup_A	201	Crystal Structure Of Human Rab43 In Complex With Gd		8e-46
2d7c_A	167	Crystal Structure Of Human Rab11 In Complex With Fi		1e-45
1z0f_A	179	Gdp-Bound Rab14 Gtpase Length = 179		1e-45
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		1e-45
4drz_A	196	Crystal Structure Of Human Rab14 Length = 196		9e-45
2bmd_A	186	High Resolution Structure Of Gdp-Bound Human Rab4a		1e-43
3bfk_A	181	Crystal Structure Of Plasmodium Falciparum Rab11a I		1e-43
2o52_A	200	Crystal Structure Of Human Rab4b In Complex With Gd		2e-43
3cpj_B	223	Crystal Structure Of Ypt31 In Complex With Yeast Ra		2e-43
1yu9_A	175	Gppnhp-Bound Rab4a Length = 175		4e-42
3rwm_B	185	Crystal Structure Of Ypt32 In Complex With Gppnhp L		4e-42
1z0k_A	172	Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W		3e-41
2hei_A	179	Crystal Structure Of Human Rab5b In Complex With Gd		4e-41
1huq_A	164	1.8a Crystal Structure Of The Monomeric Gtpase Rab5		5e-41
1n6h_A	170	Crystal Structure Of Human Rab5a Length = 170		1e-40
1tu3_A	171	Crystal Structure Of Rab5 Complex With Rabaptin5 C-		1e-40
1n6i_A	170	Crystal Structure Of Human Rab5a A30p Mutant Comple		2e-40
1n6o_A	170	Crystal Structure Of Human Rab5a A30k Mutant Comple		2e-40
1n6n_A	170	Crystal Structure Of Human Rab5a A30r Mutant Comple		2e-40
1n6p_A	170	Crystal Structure Of Human Rab5a A30e Mutant Comple		2e-40
1n6r_A	170	Crystal Structure Of Human Rab5a A30l Mutant Comple		3e-40
1z0d_A	167	Gdp-bound Rab5c Gtpase Length = 167		5e-40
1z07_A	166	Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166		5e-40
3mjh_A	168	Crystal Structure Of Human Rab5a In Complex With Th		8e-40
1x3s_A	195	Crystal Structure Of Human Rab18 In Complex With Gp		1e-39
1tu4_A	171	Crystal Structure Of Rab5-Gdp Complex Length = 171		3e-39
2oil_A	193	Crystal Structure Of Human Rab25 In Complex With Gd		5e-39
3tso_A	178	Structure Of The Cancer Associated Rab25 Protein In		6e-39
2f7s_A	217	The Crystal Structure Of Human Rab27b Bound To Gdp		6e-39
2iez_A	220	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		8e-38
1z06_A	189	Gppnhp-Bound Rab33 Gtpase Length = 189		1e-37
2if0_A	200	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		1e-37
2efc_B	181	Ara7-GdpATVPS9A Length = 181		1e-37
3bc1_A	195	Crystal Structure Of The Complex Rab27a-slp2a Lengt		2e-37
2g77_B	198	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		2e-36
2iey_A	195	Crystal Structure Of Mouse Rab27b Bound To Gdp In H		2e-36
2zet_A	203	Crystal Structure Of The Small Gtpase Rab27b Comple		3e-36
2fg5_A	192	Crystal Structure Of Human Rab31 In Complex With A		2e-35
4dkx_A	216	Crystal Structure Of The Rab 6a'(Q72l) Length = 216		2e-35
1yzq_A	170	Gppnhp-Bound Rab6 Gtpase Length = 170		3e-35
2p5s_A	199	Rab Domain Of Human Rasef In Complex With Gdp Lengt		4e-35
1yvd_A	169	Gppnhp-Bound Rab22 Gtpase Length = 169		4e-35
2y8e_A	179	Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo		5e-35
3bbp_A	211	Rab6-Gtp:gcc185 Rab Binding Domain Complex Length =		1e-34
2gil_A	162	Structure Of The Extremely Slow Gtpase Rab6a In The		2e-34
1z0j_A	170	Structure Of Gtp-Bound Rab22q64l Gtpase In Complex		2e-34
3cwz_A	188	Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188		4e-34
2fe4_A	171	The Crystal Structure Of Human Neuronal Rab6b In It		6e-34
1ky2_A	182	Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182		4e-33
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		9e-33
1yzt_A	184	Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng		7e-32
1yzu_A	170	Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng		7e-32
1d5c_A	162	Crystal Structure Of Plasmodium Falciparum Rab6 Com		8e-32
1ek0_A	170	Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17		2e-31
1vg0_B	207	The Crystal Structures Of The Rep-1 Protein In Comp		1e-30
1s8f_A	177	Crystal Structure Of Rab9 Complexed To Gdp Reveals		1e-30
1wms_A	177	High Resolution Crystal Structure Of Human Rab9 Gtp		2e-30
1vg1_A	185	Gdp-bound Rab7 Length = 185		2e-30
1yzl_A	179	Gppnhp-Bound Rab9 Gtpase Length = 179		3e-30
3law_A	207	Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2		4e-30
1t91_A	207	Crystal Structure Of Human Small Gtpase Rab7(Gtp) L		1e-29
2ocb_A	180	Crystal Structure Of Human Rab9b In Complex With A		4e-29
1u8y_A	168	Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal		2e-26
2bov_A	206	Molecular Recognition Of An Adp-Ribosylating Clostr		5e-26
2kwi_A	178	Ralb-Rlip76 (Ralbp1) Complex Length = 178		5e-26
2ke5_A	174	Solution Structure And Dynamics Of The Small Gtpase		5e-26
2a78_A	187	Crystal Structure Of The C3bot-Rala Complex Reveals		5e-26
1uad_A	175	Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi		5e-26
1z22_A	168	Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac		2e-25
1clu_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		3e-25
1agp_A	166	Three-Dimensional Structures And Properties Of A Tr		3e-25
421p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		3e-25
1jah_A	166	H-Ras P21 Protein Mutant G12p, Complexed With Guano		4e-25
1zc3_A	175	Crystal Structure Of The Ral-Binding Domain Of Exo8		6e-25
4dso_A	189	Small-Molecule Ligands Bind To A Distinct Pocket In		1e-24
4epr_A	170	Discovery Of Small Molecules That Bind To K-Ras And		2e-23
3m1i_A	219	Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex		4e-23
1c1y_A	167	Crystal Structure Of Rap.Gmppnp In Complex With The		2e-22
1wa5_A	176	Crystal Structure Of The Exportin Cse1p Complexed W		3e-22
1rrp_A	204	Structure Of The Ran-Gppnhp-Ranbd1 Complex Length =		3e-22
3ea5_A	216	Kap95p Binding Induces The Switch Loops Of Rangdp T		3e-22
3gj0_A	221	Crystal Structure Of Human Rangdp Length = 221		3e-22
2bku_A	177	Kap95p:rangtp Complex Length = 177		3e-22
1qg2_A	216	Canine Gdp-Ran R76e Mutant Length = 216		3e-22
1a2k_C	216	Gdpran-Ntf2 Complex Length = 216		3e-22
1byu_A	216	Canine Gdp-Ran Length = 216		4e-22
3brw_D	167	Structure Of The Rap-Rapgap Complex Length = 167		5e-22
1gua_A	167	Human Rap1a, Residues 1-167, Double Mutant (E30d,K3		5e-22
1qbk_C	216	Structure Of The Karyopherin Beta2-ran Gppnhp Nucle		5e-22
4dxa_A	169	Co-Crystal Structure Of Rap1 In Complex With Krit1		7e-22
1qg4_A	216	Canine Gdp-Ran F72y Mutant Length = 216		8e-22
3gj4_A	221	Crystal Structure Of Human Rangdp-Nup153znf3 Comple		1e-21
2x19_A	172	Crystal Structure Of Importin13 - Rangtp Complex Le		2e-21
3icq_B	171	Karyopherin Nuclear State Length = 171		2e-21
3ddc_A	166	Crystal Structure Of Nore1a In Complex With Ras Len		2e-21
3nc1_C	182	Crystal Structure Of The Crm1-Rangtp Complex Length		2e-21
3nby_C	176	Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclea		2e-21
3rap_R	167	The Small G Protein Rap2 In A Non Catalytic Complex		2e-21
4q21_A	189	Molecular Switch For Signal Transduction: Structura		2e-21
3ran_A	216	Canine Gdp-Ran Q69l Mutant Length = 216		2e-21
221p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		4e-21
4efm_A	171	Crystal Structure Of H-Ras G12v In Complex With Gpp		4e-21
4efl_A	171	Crystal Structure Of H-Ras Wt In Complex With Gppnh		4e-21
1wq1_R	166	Ras-Rasgap Complex Length = 166		5e-21
1rvd_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		5e-21
3v4f_A	166	H-Ras Peg 400CACL2, ORDERED OFF Length = 166		5e-21
1lfd_B	167	Crystal Structure Of The Active Ras Protein Complex		5e-21
6q21_A	171	Molecular Switch For Signal Transduction: Structura		5e-21
2q21_A	171	Crystal Structures At 2.2 Angstroms Resolution Of T		5e-21
2c5l_A	173	Structure Of Plc Epsilon Ras Association Domain Wit		5e-21
2hxs_A	178	Crystal Structure Of Rab28a Gtpase In The Inactive		8e-21
2quz_A	166	Crystal Structure Of The Activating H-Rask117r Muta		9e-21
3kkm_A	172	Crystal Structure Of H-Ras T35s In Complex With Gpp		1e-20
1iaq_A	166	C-H-Ras P21 Protein Mutant With Thr 35 Replaced By		1e-20
4f38_A	195	Crystal Structure Of Geranylgeranylated Rhoa In Com		1e-20
3tvd_A	193	Crystal Structure Of Mouse Rhoa-Gtp Complex Length		1e-20
3lo5_A	166	Crystal Structure Of The Dominant Negative S17n Mut		1e-20
1x86_B	196	Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-A		1e-20
3k9n_A	166	Allosteric Modulation Of H-Ras Gtpase Length = 166		1e-20
1lb1_B	192	Crystal Structure Of The Dbl And Pleckstrin Homolog		1e-20
521p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		1e-20
1lf0_A	166	Crystal Structure Of Rasa59g In The Gtp-Bound Form		1e-20
621p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		2e-20
2rgb_A	166	Crystal Structure Of H-Rasq61k-Gppnhp Length = 166		2e-20
2x1v_A	166	Crystal Structure Of The Activating H-Ras I163f Mut		2e-20
3clv_A	208	Crystal Structure Of Rab5a From Plasmodium Falcipar		2e-20
1nvv_Q	166	Structural Evidence For Feedback Activation By Rasg		2e-20
3i3s_R	166	Crystal Structure Of H-Ras With Thr50 Replaced By I		2e-20
4efn_A	171	Crystal Structure Of H-Ras Q61l In Complex With Gpp		3e-20
1zvq_A	166	Structure Of The Q61g Mutant Of Ras In The Gdp-Boun		4e-20
3lw8_A	185	Shigella Ipgb2 In Complex With Human Rhoa, Gdp And		4e-20
721p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		4e-20
2j1l_A	214	Crystal Structure Of Human Rho-Related Gtp-Binding		4e-20
1zw6_A	166	Crystal Structure Of The Gtp-Bound Form Of Rasq61g		5e-20
3kz1_E	182	Crystal Structure Of The Complex Of Pdz-Rhogef DhPH		5e-20
2rgc_A	166	Crystal Structure Of H-Rasq61v-Gppnhp Length = 166		5e-20
1s1c_A	183	Crystal Structure Of The Complex Between The Human		5e-20
2rga_A	166	Crystal Structure Of H-Rasq61i-Gppnhp Length = 166		5e-20
1cxz_A	182	Crystal Structure Of Human Rhoa Complexed With The		6e-20
2fv8_A	207	The Crystal Structure Of Rhob In The Gdp-Bound Stat		6e-20
3gft_A	187	Human K-Ras In Complex With A Gtp Analogue Length =		7e-20
3con_A	190	Crystal Structure Of The Human Nras Gtpase Bound Wi		9e-20
2cld_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		9e-20
4djt_A	218	Crystal Structure Of A Nuclear Gtp-Binding Protein		2e-19
1cc0_A	190	Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Le		2e-19
2erx_A	172	Crystal Structure Of Diras2 In Complex With Gdp And		2e-19
1ow3_B	193	Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With		2e-19
2j0v_A	212	The Crystal Structure Of Arabidopsis Thaliana Rac7-		3e-19
2gcn_A	201	Crystal Structure Of The Human Rhoc-Gdp Complex Len		3e-19
2gco_A	201	Crystal Structure Of The Human Rhoc-gppnhp Complex		3e-19
4epx_A	170	Discovery Of Small Molecules That Bind To K-Ras And		4e-19
4ept_A	170	Discovery Of Small Molecules That Bind To K-Ras And		4e-19
1dpf_A	180	Crystal Structure Of A Mg-Free Form Of Rhoa Complex		5e-19
1xcm_A	167	Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mu		6e-19
3msx_A	180	Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With		6e-19
1xj0_A	166	Crystal Structure Of The Gdp-Bound Form Of The Rasg		6e-19
1xcg_B	178	Crystal Structure Of Human Rhoa In Complex With DhP		6e-19
1tx4_B	177	RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177		8e-19
2nty_C	180	Rop4-Gdp-Prone8 Length = 180		1e-18
2cl0_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		1e-18
3bwd_D	182	Crystal Structure Of The Plant Rho Protein Rop5 Len		1e-18
1z2c_A	193	Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With		2e-18
2fn4_A	181	The Crystal Structure Of Human Ras-Related Protein,		2e-18
1kmq_A	184	Crystal Structure Of A Constitutively Activated Rho		5e-18
2atv_A	196	The Crystal Structure Of Human Rerg In The Gdp Boun		5e-18
2wbl_C	180	Three-Dimensional Structure Of A Binary Rop-Prone C		6e-18
2atx_A	194	Crystal Structure Of The Tc10 Gppnhp Complex Length		1e-17
1xtq_A	177	Structure Of Small Gtpase Human Rheb In Complex Wit		2e-17
3t5g_A	181	Structure Of Fully Modified Farnesylated Rheb In Co		2e-17
2l0x_A	169	Solution Structure Of The 21 Kda Gtpase Rheb Bound		3e-17
2ery_A	172	The Crystal Structure Of The Ras Related Protein Rr		5e-17
1i4d_D	192	Crystal Structure Analysis Of Rac1-Gdp Complexed Wi		7e-17
3kkp_A	183	Crystal Structure Of M-Ras P40d In Complex With Gpp		8e-17
3kko_A	183	Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX		8e-17
2vrw_A	184	Critical Structural Role For The Ph And C1 Domains		1e-16
3pir_A	183	Crystal Structure Of M-Rasd41e In Complex With Gppn		1e-16
1hh4_A	192	Rac1-Rhogdi Complex Involved In Nadph Oxidase Activ		1e-16
1x1r_A	178	Crystal Structure Of M-Ras In Complex With Gdp Leng		1e-16
1he1_C	176	Crystal Structure Of The Complex Between The Gap Do		2e-16
1foe_B	177	Crystal Structure Of Rac1 In Complex With The Guani		2e-16
2fju_A	178	Activated Rac1 Bound To Its Effector Phospholipase		2e-16
1mh1_A	186	Small G-Protein Length = 186		2e-16
3th5_A	204	Crystal Structure Of Wild-Type Rac1 Length = 204		2e-16
3sua_A	184	Crystal Structure Of The Intracellular Domain Of Pl		2e-16
3a58_B	188	Crystal Structure Of Sec3p - Rho1p Complex From Sac		2e-16
1g4u_R	184	Crystal Structure Of The Salmonella Tyrosine Phosph		2e-16
2h7v_A	188	Co-crystal Structure Of Ypka-rac1 Length = 188		2e-16
2yin_C	196	Structure Of The Complex Between Dock2 And Rac1. Le		2e-16
3b13_B	184	Crystal Structure Of The Dhr-2 Domain Of Dock2 In C		3e-16
3sea_A	167	Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bo		3e-16
2ic5_A	180	Crystal Structure Of Human Rac3 Grown In The Presen		3e-16
2g0n_A	179	The Crystal Structure Of The Human Rac3 In Complex		3e-16
3sbd_A	187	Crystal Structure Of Rac1 P29s Mutant Length = 187		3e-16
2c2h_A	192	Crystal Structure Of The Human Rac3 In Complex With		3e-16
1e96_A	192	Structure Of The RacP67PHOX COMPLEX Length = 192		4e-16
1i4t_D	192	Crystal Structure Analysis Of Rac1-Gmppnp In Comple		4e-16
4gzm_A	204	Crystal Structure Of Rac1 F28l Mutant Length = 204		5e-16
3ryt_C	180	The Plexin A1 Intracellular Region In Complex With		1e-15
4gzl_A	204	Crystal Structure Of Rac1 Q61l Mutant Length = 204		1e-15
2wkp_A	332	Structure Of A Photoactivatable Rac1 Containing Lov		1e-15
2wkq_A	332	Structure Of A Photoactivatable Rac1 Containing The		2e-15
2wkr_A	332	Structure Of A Photoactivatable Rac1 Containing The		2e-15
1ds6_A	192	Crystal Structure Of A Rac-Rhogdi Complex Length =		4e-15
2q3h_A	201	The Crystal Structure Of Rhoua In The Gdp-bound Sta		5e-15
1gwn_A	205	The Crystal Structure Of The Core Domain Of RhoeRND		7e-15
2v55_B	200	Mechanism Of Multi-site Phosphorylation From A Rock		7e-15
1m7b_A	184	Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATI		8e-15
3oes_A	201	Crystal Structure Of The Small Gtpase Rhebl1 Length		9e-15
2gf0_A	199	The Crystal Structure Of The Human Diras1 Gtpase In		2e-14
1ryf_A	203	Alternative Splicing Of Rac1 Generates Rac1b, A Sel		2e-14
2w2t_A	185	Rac2 (G12v) In Complex With Gdp Length = 185		5e-14
2w2v_A	184	Rac2 (G12v) In Complex With Gtpgs Length = 184		7e-14
1an0_A	190	Cdc42hs-Gdp Complex Length = 190		1e-13
2dfk_B	194	Crystal Structure Of The Cdc42-Collybistin Ii Compl		2e-13
2qrz_A	189	Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is		2e-13
2odb_A	192	The Crystal Structure Of Human Cdc42 In Complex Wit		2e-13
1grn_A	191	Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.		2e-13
2wm9_B	190	Structure Of The Complex Between Dock9 And Cdc42. L		2e-13
4did_A	193	Crystal Structure Of Salmonella Effector N-Terminal		2e-13
1doa_A	191	Structure Of The Rho Family Gtp-Binding Protein Cdc		2e-13
1aje_A	194	Cdc42 From Human, Nmr, 20 Structures Length = 194		2e-13
1kz7_B	188	Crystal Structure Of The DhPH FRAGMENT OF MURINE DB		2e-13
2cjw_B	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		2e-13
1a4r_B	191	G12v Mutant Of Human Placental Cdc42 Gtpase In The		2e-13
1cee_A	179	Solution Structure Of Cdc42 In Complex With The Gtp		3e-13
2cjw_A	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		3e-13
1am4_D	177	Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. S		3e-13
3vhl_B	195	Crystal Structure Of The Dhr-2 Domain Of Dock8 In C		3e-13
3gcg_A	182	Crystal Structure Of Map And Cdc42 Complex Length =		3e-13
1gzs_A	180	Crystal Structure Of The Complex Between The Gef Do		3e-13
2cls_A	198	The Crystal Structure Of The Human Rnd1 Gtpase In T		3e-13
3eg5_A	178	Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex W		3e-13
1ees_A	178	Solution Structure Of Cdc42hs Complexed With A Pept		3e-13
2rex_B	197	Crystal Structure Of The Effector Domain Of Plxnb1		3e-13
3q3j_B	214	Crystal Structure Of Plexin A2 Rbd In Complex With		3e-13
2nzj_A	175	The Crystal Structure Of Rem1 In Complex With Gdp L		4e-13
2g3y_A	211	Crystal Structure Of The Human Small Gtpase Gem Len		8e-13
2ase_A	178	Nmr Structure Of The F28l Mutant Of Cdc42hs Length		8e-13
3qbv_A	178	Structure Of Designed Orthogonal Interaction Betwee		8e-13
2ht6_A	174	Crystal Structure Of Human Gem G-Domain Bound To Gd		1e-12
2kb0_A	178	Cdc42(T35a) Length = 178		1e-12
1nf3_A	195	Structure Of Cdc42 In A Complex With The Gtpase-Bin		1e-12
3ref_B	194	Crystal Structure Of Ehrho1 Bound To Gdp And Magnes		1e-12
1cf4_A	184	Cdc42ACK GTPASE-Binding Domain Complex Length = 184		1e-12
4dvg_A	188	Crystal Structure Of E. Histolytica Formin1 Bound T		2e-12
2gjs_A	176	The Crystal Structure Of Human Rrad In Complex With		3e-12
2dpx_A	174	Crystal Structure Of Human Rad Gtpase Length = 174		8e-12
3q72_A	166	Crystal Structure Of Rad G-Domain-Gtp Analog Comple		1e-11
2yc2_C	208	Intraflagellar Transport Complex 25-27 From Chlamyd		1e-11
1zd9_A	188	Structure Of Human Adp-Ribosylation Factor-Like 10b		4e-11
2h18_A	193	Structure Of Human Adp-Ribosylation Factor-Like 10b		8e-11
2al7_A	186	Structure Of Human Adp-Ribosylation Factor-Like 10c		1e-10
3cbq_A	195	Crystal Structure Of The Human Rem2 Gtpase With Bou		2e-10
3lvr_E	497	The Crystal Structure Of Asap3 In Complex With Arf6		1e-09
4aii_A	180	Crystal Structure Of The Rat Rem2 Gtpase - G Domain		2e-09
3q85_A	169	Crystal Structure Of Rem2 G-Domain -Gtp Analog Comp		4e-09
4fme_C	160	Espg-Rab1-Arf6 Complex Length = 160		5e-09
1e0s_A	174	Small G Protein Arf6-Gdp Length = 174		5e-09
3n5c_A	162	Crystal Structure Of Arf6delta13 Complexed With Gdp		5e-09
2a5d_A	175	Structural Basis For The Activation Of Cholera Toxi		5e-09
3tjz_A	164	Crystal Structure Of Arf1 Bound To The GammaZETA-Co		5e-09
2k5u_A	181	Solution Structure Of Myirstoylated Yeast Arf1 Prot		6e-09
1mr3_F	181	Saccharomyces Cerevisiae Adp-Ribosylation Factor 2		9e-09
3pcr_B	162	Structure Of Espg-Arf6 Complex Length = 162		1e-08
3o47_A	329	Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le		2e-08
2w83_A	165	Crystal Structure Of The Arf6 Gtpase In Complex Wit		3e-08
1re0_A	164	Structure Of Arf1-Gdp Bound To Sec7 Domain Complexe		3e-08
2a5g_A	175	Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length		3e-08
1hur_A	180	Human Adp-Ribosylation Factor 1 Complexed With Gdp,		3e-08
1rrg_A	181	Non-Myristoylated Rat Adp-Ribosylation Factor-1 Com		3e-08
3vhx_A	172	The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesi		3e-08
3doe_A	192	Complex Of Arl2 And Bart, Crystal Form 1 Length = 1		8e-08
1r4a_A	165	Crystal Structure Of Gtp-Bound Adp-Ribosylation Fac		9e-08
1ksh_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 2 (Nati		9e-08
1ksg_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 1 Lengt		9e-08
3lrp_A	181	Crystal Structure Of Plasmodium Falciparum Adp-Ribo		1e-07
1z6x_A	180	Structure Of Human Adp-Ribosylation Factor 4 Length		2e-07
3rd1_A	178	Structure Of An Adp Ribosylation Factor From Entamo		2e-07
3c5c_A	187	Crystal Structure Of Human Ras-Like, Family 12 Prot		2e-07
1j2j_A	166	Crystal Structure Of Gga1 Gat N-terminal Region In		2e-07
4gok_B	169	The Crystal Structure Of Arl2gppnhp In Complex With		5e-07
3aq4_A	184	Molecular Insights Into Plant Cell Proliferation Di		9e-07
2b6h_A	192	Structure Of Human Adp-Ribosylation Factor 5 Length		9e-07
3d6t_B	171	Structure Of The Roc Domain From The Parkinson's Di		1e-06
2zej_A	184	Structure Of The Roc Domain From The Parkinson's Di		1e-06
4dcn_A	166	Crystal Structure Analysis Of The Arfaptin2 Bar Dom		2e-06
4goj_A	189	The Crystal Structure Of Full Length Arl3gppnhp In		4e-06
2ksq_A	181	The Myristoylated Yeast Arf1 In A Gtp And Bicelle B		4e-06
1fzq_A	181	Crystal Structure Of Murine Arl3-Gdp Length = 181		4e-06
3bh7_A	164	Crystal Structure Of The Rp2-Arl3 Complex Bound To		9e-06
1ksj_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 2 (Seme		1e-05
1upt_A	171	Structure Of A Complex Of The Golgin-245 Grip Domai		1e-05
1yzg_A	179	Structure Of Human Adp-ribosylation Factor-like 8 L		2e-05
2h17_A	181	Structure Of Human Adp-Ribosylation Factor-Like 5 (		5e-05
2h16_A	183	Structure Of Human Adp-Ribosylation Factor-Like 5 (		6e-05
3bh6_A	164	Crystal Structure Of The Rp2-Arl3 Complex Bound To		7e-05
1moz_A	183	Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharo		7e-05
1z6y_A	179	Structure Of Human Adp-Ribosylation Factor-Like 5 L		8e-05
1zj6_A	187	Crystal Structure Of Human Arl5 Length = 187		9e-05
2iwr_A	178	Gtpase Like Domain Of Centaurin Gamma 1 (Human) Len		3e-04
2bmj_A	178	Gtpase Like Domain Of Centaurin Gamma 1 (Human) Len		3e-04

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score =  326 bits (836), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 156/188 (82%), Positives = 164/188 (87%)
Query: 1   MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ 60
           MN EYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQ
Sbjct: 9   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 68
Query: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120
           IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWL EIDRYASENVNKLLVG
Sbjct: 69  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG 128
Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASN 180
           NKCDLT  KVV Y TAK FAD +GIPF+ETSAK+ATNVEQ+FM MAA IK RM     + 
Sbjct: 129 NKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAG 188
Query: 181 NARPPTVQ 188
            A    V+
Sbjct: 189 GAEKSNVK 196

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score =  322 bits (825), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 153/173 (88%), Positives = 160/173 (92%)
Query: 1   MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ 60
           MN EYDYLFKLLLIGDSGVGK+CLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQ
Sbjct: 9   MNPEYDYLFKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 68
Query: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120
           IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWL EIDRYASENVNKLLVG
Sbjct: 69  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG 128
Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRM 173
           NKCDLT  KVV Y TAK FAD +GIPF+ETSAK+ATNVEQ+FM MAA IK RM
Sbjct: 129 NKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 181

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score =  320 bits (821), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 153/174 (87%), Positives = 159/174 (91%)
Query: 1   MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ 60
           MN EYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQ
Sbjct: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 60
Query: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120
           IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWL EIDRYASENVNKLLVG
Sbjct: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG 120
Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMA 174
            KCDLT  KVV Y TAK FAD +GIPF+ETSAK+ATNVEQ+FM MAA IK RM 
Sbjct: 121 IKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMG 174

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score =  320 bits (820), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 152/170 (89%), Positives = 158/170 (92%)
Query: 4   EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWD 63
           EYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQIWD
Sbjct: 2   EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 61
Query: 64  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKC 123
           TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWL EIDRYASENVNKLLVGNKC
Sbjct: 62  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKC 121
Query: 124 DLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRM 173
           DLT  KVV Y TAK FAD +GIPF+ETSAK+ATNVEQ+FM MAA IK RM
Sbjct: 122 DLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 171

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score =  320 bits (819), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 152/171 (88%), Positives = 158/171 (92%)
Query: 4   EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWD 63
           EYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQIWD
Sbjct: 21  EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 80
Query: 64  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKC 123
           TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWL EIDRYASENVNKLLVGNKC
Sbjct: 81  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKC 140
Query: 124 DLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMA 174
           DLT  KVV Y TAK FAD +GIPF+ETSAK+ATNVEQ+FM MAA IK RM 
Sbjct: 141 DLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMG 191

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score =  317 bits (811), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 151/170 (88%), Positives = 157/170 (92%)
Query: 4   EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWD 63
           EYD LFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQIWD
Sbjct: 2   EYDALFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 61
Query: 64  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKC 123
           TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWL EIDRYASENVNKLLVGNKC
Sbjct: 62  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKC 121
Query: 124 DLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRM 173
           DLT  KVV Y TAK FAD +GIPF+ETSAK+ATNVEQ+FM MAA IK RM
Sbjct: 122 DLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 171

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score =  313 bits (801), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 150/173 (86%), Positives = 156/173 (90%)
Query: 2   NNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQI 61
           N EYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQI
Sbjct: 27  NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 86
Query: 62  WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGN 121
           WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWL EIDRYASENVNKLLVGN
Sbjct: 87  WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 146
Query: 122 KCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMA 174
           KCDLT  KVV Y TAK FAD +GIPF+ETSAK+ATNVEQ+F   AA IK R  
Sbjct: 147 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFXTXAAEIKKRXG 199

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score =  310 bits (795), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 149/171 (87%), Positives = 155/171 (90%)
Query: 4   EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWD 63
           EYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQIWD
Sbjct: 5   EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 64
Query: 64  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKC 123
           TAGQERFRTITSSYYRGAHGIIVVYDVTDQES+ NVKQWL EIDRYASENVNKLLVGNK 
Sbjct: 65  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKS 124
Query: 124 DLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMA 174
           DLT  KVV   TAK FAD +GIPF+ETSAK+ATNVEQAFM MAA IK RM 
Sbjct: 125 DLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMG 175

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score =  310 bits (794), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 149/171 (87%), Positives = 155/171 (90%)
Query: 4   EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWD 63
           EYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQIWD
Sbjct: 5   EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 64
Query: 64  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKC 123
           TAGQERFRTITSSYYRGAHGIIVVYDVTDQES+ NVKQWL EIDRYASENVNKLLVGNK 
Sbjct: 65  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKS 124
Query: 124 DLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMA 174
           DLT  KVV   TAK FAD +GIPF+ETSAK+ATNVEQAFM MAA IK RM 
Sbjct: 125 DLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMG 175

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score =  307 bits (787), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 146/164 (89%), Positives = 152/164 (92%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           KLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQIWDTAGQER
Sbjct: 1   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANK 129
           FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWL EIDRYASENVNKLLVGNKCDLT  K
Sbjct: 61  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 120
Query: 130 VVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRM 173
           VV Y TAK FAD +GIPF+ETSAK+ATNVEQ+FM MAA IK RM
Sbjct: 121 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 164

>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206

Iteration: 1
 Score =  291 bits (744), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 138/205 (67%), Positives = 159/205 (77%), Gaps = 4/205 (1%)
Query: 1   MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ 60
           MN+EYDYLFKLLLIG+SGVGKSCLLLRF+DD+Y   YISTIGVDFKI+TVE DGKT+KLQ
Sbjct: 1   MNSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQ 60
Query: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120
           IWDTAGQERFRTITSSYYRG+HGII+VYDVTDQESFN VK WL EIDRYA+  V KLLVG
Sbjct: 61  IWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVG 120
Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASN 180
           NKCDL   +VV Y+ AK FAD   +PF+ETSA  +TNVE AF+ MA  IK  M+ Q  + 
Sbjct: 121 NKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNE 180
Query: 181 NARPP----TVQIRGQPVNQKSGCC 201
             +       V ++GQ +    GCC
Sbjct: 181 TTQKKEDKGNVNLKGQSLTNTGGCC 205

>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206

Iteration: 1
 Score =  288 bits (737), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 139/206 (67%), Positives = 160/206 (77%), Gaps = 5/206 (2%)
Query: 1   MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ 60
           MN+EYDYLFKLLLIG+SGVGKSCLLLRF+DD+Y   YISTIGVDFKI+TVE DGKT+KLQ
Sbjct: 1   MNSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQ 60
Query: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120
           IWDTAGQERFRTITSSYYRG+HGII+VYDVTDQESFN VK WL EIDRYA+  V KLLVG
Sbjct: 61  IWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVG 120
Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASN 180
           NKCDL   +VV Y+ AK FAD   +PF+ETSA  +TNVE AF+ MA  IK  M+ Q  + 
Sbjct: 121 NKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNE 180
Query: 181 NARPP----TVQIRGQPV-NQKSGCC 201
             +       V ++GQ + N   GCC
Sbjct: 181 TTQKKEDKGNVNLKGQSLTNTGGGCC 206

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score =  281 bits (720), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 132/173 (76%), Positives = 150/173 (86%)
Query: 1   MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ 60
           MN EYDYLFKLLLIGDSGVGKSCLLLRFADD+Y +SYISTIGVDFKIRT+  + KT+KLQ
Sbjct: 2   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQ 61
Query: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120
           IWDTAGQERFRTITSSYYRGAHGII+VYDVTD++SF+NVKQW+ EIDRYA ENVNKLLVG
Sbjct: 62  IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKLLVG 121
Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRM 173
           NKCDL + +VV+ +  +  AD  GI F+ETSAK+A NVEQAF  MA  IK R+
Sbjct: 122 NKCDLVSKRVVTSDEGRELADSHGIKFIETSAKNAYNVEQAFHTMAGEIKKRV 174

>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185

Iteration: 1
 Score =  271 bits (694), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 128/168 (76%), Positives = 143/168 (85%)
Query: 3   NEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIW 62
           +EYDYLFKLLLIG+SGVGKSCLLLRF+DD+Y   YISTIGVDFKI+TVE DGKT+KLQIW
Sbjct: 16  SEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIW 75
Query: 63  DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNK 122
           DTAGQERFRTITSSYYRG+HGII+VYDVTDQESFN VK WL EIDRYA+  V KLLVGNK
Sbjct: 76  DTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNK 135
Query: 123 CDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIK 170
           CDL   +VV Y+ AK FAD   +PF+ETSA  +TNVE AF+ MA  IK
Sbjct: 136 CDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIK 183

>pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117

Iteration: 1
 Score =  233 bits (594), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 111/117 (94%), Positives = 113/117 (96%)
Query: 11  LLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF 70
           LLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQIWDTAGQERF
Sbjct: 1   LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 71  RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTA 127
           RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWL EIDRYASENVNKLLVGNKCDLT 
Sbjct: 61  RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTT 117

>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183

Iteration: 1
 Score =  229 bits (583), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 103/173 (59%), Positives = 138/173 (79%)
Query: 1   MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ 60
           M   YDYLFKLLLIGDSGVGK+C+L RF++D++  ++ISTIG+DFKIRT+E DGK IKLQ
Sbjct: 1   MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQ 60
Query: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120
           IWDTAGQERFRTIT++YYRGA GI++VYD+T+++SF+N++ W+  I+ +AS +V K+++G
Sbjct: 61  IWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILG 120
Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRM 173
           NKCD+   + VS E  +  A + GI FMETSAK+  NVE AF  +A  IK +M
Sbjct: 121 NKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKM 173

>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174

Iteration: 1
 Score =  226 bits (575), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 101/168 (60%), Positives = 136/168 (80%)
Query: 6   DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTA 65
           DYLFKLLLIGDSGVGK+C+L RF++D++  ++ISTIG+DFKIRT+E DGK IKLQIWDTA
Sbjct: 4   DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTA 63
Query: 66  GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL 125
           GQERFRTIT++YYRGA GI++VYD+T+++SF+N++ W+  I+ +AS +V K+++GNKCD+
Sbjct: 64  GQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDV 123
Query: 126 TANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRM 173
              + VS E  +  A + GI FMETSAK+  NVE AF  +A  IK +M
Sbjct: 124 NDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKM 171

>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181

Iteration: 1
 Score =  213 bits (543), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 109/180 (60%), Positives = 136/180 (75%), Gaps = 5/180 (2%)
Query: 1   MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ 60
           M  +YD+LFKLL+IGDSGVGKS LLLRFAD+++  SYI+TIGVDFKIRTVE +G+ +KLQ
Sbjct: 2   MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQ 61
Query: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120
           IWDTAGQERFRTITS+YYRG HG+IVVYDVT  ESF NVK+WL+EI++   ++V ++LVG
Sbjct: 62  IWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQ-NCDDVCRILVG 120
Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI----KNRMASQ 176
           NK D    KVV  E A  FA ++GI   ETSAK   NVE+ F  +   +    K+ +A Q
Sbjct: 121 NKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDNLAKQ 180

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score =  210 bits (535), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 95/171 (55%), Positives = 133/171 (77%), Gaps = 1/171 (0%)
Query: 5   YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDT 64
           YD + K+LLIGDSGVGKSCLL+RF +D +  S+I+TIG+DFKI+TV+ +GK +KLQ+WDT
Sbjct: 17  YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDT 76
Query: 65  AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCD 124
           AGQERFRTIT++YYRGA GII+VYDVTD+ +F N+KQW   ++ +A++    LLVGNK D
Sbjct: 77  AGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD 136
Query: 125 LTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMAS 175
           +   +VV+ +  +A A E+GIPF+E+SAK+  NV + F  +A  I+ ++ S
Sbjct: 137 M-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDS 186

>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170

Iteration: 1
 Score =  207 bits (527), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 94/170 (55%), Positives = 132/170 (77%), Gaps = 1/170 (0%)
Query: 6   DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTA 65
           D + K+LLIGDSGVGKSCLL+RF +D +  S+I+TIG+DFKI+TV+ +GK +KLQIWDTA
Sbjct: 1   DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60
Query: 66  GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL 125
           GQERFRTIT++YYRGA GII+VYD+TD+ +F N+KQW   ++ +A++    LLVGNK D+
Sbjct: 61  GQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM 120
Query: 126 TANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMAS 175
              +VV+ +  +A A E+GIPF+E+SAK+  NV + F  +A  I+ ++ S
Sbjct: 121 -ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDS 169

>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170

Iteration: 1
 Score =  205 bits (522), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 94/170 (55%), Positives = 131/170 (77%), Gaps = 1/170 (0%)
Query: 6   DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTA 65
           D + K+LLIGDSGVGKSCLL+RF +D +  S+I+TIG+DFKI+TV+ +GK +KLQIWDTA
Sbjct: 1   DSIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60
Query: 66  GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL 125
           GQERFRTIT++YYRGA GII+VYD+TD+ +F N+KQW   ++ +A++    LLVGNK D 
Sbjct: 61  GQERFRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD- 119
Query: 126 TANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMAS 175
              +VV+ +  +A A E+GIPF+E+SAK+  NV + F  +A  I+ ++ S
Sbjct: 120 XETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDS 169

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score =  205 bits (522), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 93/168 (55%), Positives = 131/168 (77%), Gaps = 1/168 (0%)
Query: 8   LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
           + K+LLIGDSGVGKSCLL+RF +D +  S+I+TIG+DFKI+TV+ +GK +KLQ+WDTAGQ
Sbjct: 7   IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQ 66
Query: 68  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTA 127
           ERFRTIT++YYRGA GII+VYDVTD+ +F N+KQW   ++ +A++    LLVGNK D+  
Sbjct: 67  ERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-E 125
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMAS 175
            +VV+ +  +A A E+GIPF+E+SAK+  NV + F  +A  I+ ++ S
Sbjct: 126 TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDS 173

>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170

Iteration: 1
 Score =  205 bits (521), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 94/170 (55%), Positives = 131/170 (77%), Gaps = 1/170 (0%)
Query: 6   DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTA 65
           D + K+LLIGDSGVGKSCLL+RF +D +  S+I+TIG+DFKI+TV+ +GK +KLQ+WDTA
Sbjct: 1   DSIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTA 60
Query: 66  GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL 125
           GQERFRTIT++YYRGA GII+VYDVTD+ +F N+KQW   ++ +A++    LLVGNK D 
Sbjct: 61  GQERFRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD- 119
Query: 126 TANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMAS 175
              +VV+ +  +A A E+GIPF+E+SAK+  NV + F  +A  I+ ++ S
Sbjct: 120 XETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDS 169

>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score =  200 bits (509), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 88/174 (50%), Positives = 127/174 (72%), Gaps = 1/174 (0%)
Query: 5   YDYLFKLLLIGDSGVGKSCLLLRFADDSYLE-SYISTIGVDFKIRTVEQDGKTIKLQIWD 63
           YD  FK++L+GDSGVGK+CLL+RF D ++L  ++IST+G+DF+ + ++ DG  +KLQ+WD
Sbjct: 7   YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWD 66
Query: 64  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKC 123
           TAGQERFR++T +YYR AH ++++YDVT++ SF+N++ WL EI  YA  +V  +L+GNK 
Sbjct: 67  TAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKV 126
Query: 124 DLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQP 177
           D    +VV  E  +  A E G+PFMETSAK+  NV+ AF A+A  +K R    P
Sbjct: 127 DSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKRRSMKAP 180

>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169

Iteration: 1
 Score =  195 bits (495), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 86/165 (52%), Positives = 122/165 (73%)
Query: 5   YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDT 64
           +DY+FK+L+IG+S VGK+  L R+ADDS+  +++ST+G+DFK++T+ ++ K IKLQIWDT
Sbjct: 2   FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDT 61
Query: 65  AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCD 124
           AGQER+RTIT++YYRGA G I++YD+T++ESFN V+ W  +I  Y+ +N   LLVGNKCD
Sbjct: 62  AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCD 121
Query: 125 LTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
           +   +VVS E  +  AD +G  F E SAK   NV+Q F  +   I
Sbjct: 122 MEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVI 166

>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191

Iteration: 1
 Score =  193 bits (491), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 84/170 (49%), Positives = 126/170 (74%)
Query: 5   YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDT 64
           +DY+FKLL+IG+S VGK+  L R+ADD++  +++ST+G+DFK++TV +  K +KLQIWDT
Sbjct: 20  FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDT 79
Query: 65  AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCD 124
           AGQER+RTIT++YYRGA G I++YD+T++ESFN V+ W  +I  Y+ +N   +LVGNKCD
Sbjct: 80  AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCD 139
Query: 125 LTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMA 174
           +   +VV  E  +  A+++G  F E SAK   +V QAF  +  +I ++M+
Sbjct: 140 MEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMS 189

>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189

Iteration: 1
 Score =  191 bits (486), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 87/168 (51%), Positives = 120/168 (71%)
Query: 6   DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTA 65
           DY+FKLLLIG+S VGK+  L R+ADDS+  +++ST+G+DFK++TV +  K IKLQIWDTA
Sbjct: 20  DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTA 79
Query: 66  GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL 125
           GQER+RTIT++YYRGA G +++YD+ +QESF  V+ W  +I  Y+ +N   +LVGNKCDL
Sbjct: 80  GQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDL 139
Query: 126 TANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRM 173
              +VV  E  +  AD++G  F E SAK   NV+Q F  +   I  +M
Sbjct: 140 EDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKM 187

>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203

Iteration: 1
 Score =  190 bits (482), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 91/201 (45%), Positives = 133/201 (66%), Gaps = 6/201 (2%)
Query: 2   NNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQI 61
           ++ +DY FK+L+IG+S VGK+  L R+ADDS+  +++ST+G+DFK++T+ ++ K IKLQI
Sbjct: 2   SHXFDYXFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQI 61
Query: 62  WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGN 121
           WDTAG ER+RTIT++YYRGA G I+ YD+T++ESFN V+ W  +I  Y+ +N   LLVGN
Sbjct: 62  WDTAGLERYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGN 121
Query: 122 KCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMA-----SQ 176
           KCD    +VVS E  +  AD +G  F E SAK   NV+Q F  +   I  + +     + 
Sbjct: 122 KCDXEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKXSESLDTAD 181
Query: 177 PASNNARP-PTVQIRGQPVNQ 196
           PA   A+  P +  +  P +Q
Sbjct: 182 PAVTGAKQGPQLTDQQAPPHQ 202

>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191

Iteration: 1
 Score =  187 bits (476), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 90/167 (53%), Positives = 121/167 (72%)
Query: 7   YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG 66
           YLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R V  DGK IKLQIWDTAG
Sbjct: 20  YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAG 79
Query: 67  QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLT 126
           QE FR+IT SYYRGA G ++VYD+T +E+FN++  WL +  +++S N+  +L+GNK DL 
Sbjct: 80  QESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLE 139
Query: 127 ANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRM 173
           + + V  E  +AFA E G+ FMETSAK+A NVE+AF+  A  I  ++
Sbjct: 140 SRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKI 186

>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174

Iteration: 1
 Score =  187 bits (474), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 88/169 (52%), Positives = 123/169 (72%)
Query: 1   MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ 60
           + + Y YLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R +  DGK IKLQ
Sbjct: 3   LGSAYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQ 62
Query: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120
           IWDTAGQE FR+IT SYYRGA G ++VYD+T +++FN++  WL +  ++++ N+  +L+G
Sbjct: 63  IWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIG 122
Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
           NK DL + + V  E  +AFA E G+ FMETSAK+A+NVE+AF+  A  I
Sbjct: 123 NKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEI 171

>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191

Iteration: 1
 Score =  184 bits (468), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 92/169 (54%), Positives = 124/169 (73%), Gaps = 2/169 (1%)
Query: 2   NNEYDYLFKLLLIGDSGVGKSCLLLRFADDSY-LESYISTIGVDFKIRTVEQDGKTIKLQ 60
           ++EYDYLFK++LIGDSGVGKS LL RF  + + LES  STIGV+F  R+++ DGKTIK Q
Sbjct: 23  DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESK-STIGVEFATRSIQVDGKTIKAQ 81
Query: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120
           IWDTAGQER+R ITS+YYRGA G ++VYD+    ++ NV++WL E+  +A  N+  +LVG
Sbjct: 82  IWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVG 141
Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
           NK DL   + V  + A+AFA++ G+ F+ETSA  +TNVE AF  +   I
Sbjct: 142 NKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190

>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184

Iteration: 1
 Score =  182 bits (461), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 91/166 (54%), Positives = 121/166 (72%), Gaps = 2/166 (1%)
Query: 5   YDYLFKLLLIGDSGVGKSCLLLRFADDSY-LESYISTIGVDFKIRTVEQDGKTIKLQIWD 63
           YDYLFK++LIGDSGVGKS LL RF  + + LES  STIGV+F  R+++ DGKTIK QIWD
Sbjct: 17  YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESK-STIGVEFATRSIQVDGKTIKAQIWD 75
Query: 64  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKC 123
           TAGQER+R ITS+YYRGA G ++VYD+    ++ NV++WL E+  +A  N+  +LVGNK 
Sbjct: 76  TAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKS 135
Query: 124 DLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
           DL   + V  + A+AFA++ G+ F+ETSA  +TNVE AF  +   I
Sbjct: 136 DLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 181

>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191

Iteration: 1
 Score =  181 bits (460), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 91/169 (53%), Positives = 123/169 (72%), Gaps = 2/169 (1%)
Query: 2   NNEYDYLFKLLLIGDSGVGKSCLLLRFADDSY-LESYISTIGVDFKIRTVEQDGKTIKLQ 60
           ++EYDYLFK++LIGDSGVGKS LL RF  + + LES  STIGV+F  R+++ DGKTIK Q
Sbjct: 23  DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESK-STIGVEFATRSIQVDGKTIKAQ 81
Query: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120
           IWDTAG ER+R ITS+YYRGA G ++VYD+    ++ NV++WL E+  +A  N+  +LVG
Sbjct: 82  IWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVG 141
Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
           NK DL   + V  + A+AFA++ G+ F+ETSA  +TNVE AF  +   I
Sbjct: 142 NKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190

>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172

Iteration: 1
 Score =  181 bits (459), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 91/169 (53%), Positives = 123/169 (72%), Gaps = 2/169 (1%)
Query: 2   NNEYDYLFKLLLIGDSGVGKSCLLLRFADDSY-LESYISTIGVDFKIRTVEQDGKTIKLQ 60
           ++EYDYLFK++LIGDSGVGKS LL RF  + + LES  STIGV+F  R+++ DGKTIK Q
Sbjct: 2   SDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESK-STIGVEFATRSIQVDGKTIKAQ 60
Query: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120
           IWDTAG ER+R ITS+YYRGA G ++VYD+    ++ NV++WL E+  +A  N+  +LVG
Sbjct: 61  IWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVG 120
Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
           NK DL   + V  + A+AFA++ G+ F+ETSA  +TNVE AF  +   I
Sbjct: 121 NKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 169

>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199

Iteration: 1
 Score =  180 bits (457), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 93/173 (53%), Positives = 125/173 (72%), Gaps = 3/173 (1%)
Query: 5   YDYLFKLLLIGDSGVGKSCLLLRFADDSY-LESYISTIGVDFKIRTVEQDGKTIKLQIWD 63
           YDYLFK++LIGDSGVGKS LL RF  + + LES  STIGV+F  R+++ DGKTIK QIWD
Sbjct: 2   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESK-STIGVEFATRSIQVDGKTIKAQIWD 60
Query: 64  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKC 123
           TAGQER+R ITS+YYRGA G ++VYD+    ++ NV++WL E+  +A  N+  +LVGNK 
Sbjct: 61  TAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKS 120
Query: 124 DLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQ 176
           DL   + V  + A+AFA++  + F+ETSA  +TNVE+AF  +   I  R+ SQ
Sbjct: 121 DLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIY-RIVSQ 172

>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201

Iteration: 1
 Score =  180 bits (456), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 86/179 (48%), Positives = 125/179 (69%)
Query: 4   EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWD 63
           +YD+LFK++LIG++GVGK+CL+ RF    +     +TIGVDF I+TVE +G+ +KLQIWD
Sbjct: 22  DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWD 81
Query: 64  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKC 123
           TAGQERFR+IT SYYR A+ +I+ YD+T +ESF  + +WL EI++YAS  V  +LVGNK 
Sbjct: 82  TAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKI 141
Query: 124 DLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNA 182
           DL   + VS + A+ F++   + ++ETSAK + NVE+ F+ +A  + +        NN 
Sbjct: 142 DLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEARQNTLVNNV 200

>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173

Iteration: 1
 Score =  180 bits (456), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 91/169 (53%), Positives = 122/169 (72%), Gaps = 2/169 (1%)
Query: 2   NNEYDYLFKLLLIGDSGVGKSCLLLRFADDSY-LESYISTIGVDFKIRTVEQDGKTIKLQ 60
           ++EYDYLFK++LIGDSGVGKS LL RF  + + LES  STIGV+F  R+++ DGKTIK Q
Sbjct: 5   DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESK-STIGVEFATRSIQVDGKTIKAQ 63
Query: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120
           IWDTAG ER+R ITS+YYRGA G ++VYD+    ++ NV++WL E+  +A  N+   LVG
Sbjct: 64  IWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVG 123
Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
           NK DL   + V  + A+AFA++ G+ F+ETSA  +TNVE AF  +   I
Sbjct: 124 NKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 172

>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201

Iteration: 1
 Score =  179 bits (454), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 85/172 (49%), Positives = 124/172 (72%), Gaps = 1/172 (0%)
Query: 2   NNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQI 61
           + +YD+LFKL+L+GD+ VGK+C++ RF   ++ E   STIGVDF ++T+E  GK +KLQI
Sbjct: 23  DEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQI 82
Query: 62  WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGN 121
           WDTAGQERFRTIT SYYR A+G I+ YD+T + SF +V  W+ ++ +YA  N+ +LL+GN
Sbjct: 83  WDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGN 142
Query: 122 KCDLTANKVVSYETAKAFADEIGIP-FMETSAKSATNVEQAFMAMAASIKNR 172
           K DL+  + VS   A++ A+   I   +ETSAK ++NVE+AF+ +A  +  R
Sbjct: 143 KSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMR 194

>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167

Iteration: 1
 Score =  179 bits (453), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 91/167 (54%), Positives = 120/167 (71%), Gaps = 2/167 (1%)
Query: 4   EYDYLFKLLLIGDSGVGKSCLLLRFADDSY-LESYISTIGVDFKIRTVEQDGKTIKLQIW 62
           EYDYLFK++LIGDSGVGKS LL RF  + + LES  STIGV+F  R+++ DGKTIK QIW
Sbjct: 1   EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESK-STIGVEFATRSIQVDGKTIKAQIW 59
Query: 63  DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNK 122
           DTAG ER+R ITS+YYRGA G ++VYD+    ++ NV++WL E+  +A  N+   LVGNK
Sbjct: 60  DTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNK 119
Query: 123 CDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
            DL   + V  + A+AFA++ G+ F+ETSA  +TNVE AF  +   I
Sbjct: 120 SDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 166

>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179

Iteration: 1
 Score =  179 bits (453), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 83/165 (50%), Positives = 113/165 (68%)
Query: 5   YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDT 64
           Y Y+FK ++IGD GVGKSCLL +F +  ++     TIGV+F  R +E  G+ IKLQIWDT
Sbjct: 12  YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDT 71
Query: 65  AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCD 124
           AGQERFR +T SYYRGA G ++VYD+T + ++N++  WL +     + N   +L+GNK D
Sbjct: 72  AGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKAD 131
Query: 125 LTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
           L A + V+YE AK FA+E G+ F+E SAK+  NVE AF+  A  I
Sbjct: 132 LEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 176

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score =  179 bits (453), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 83/169 (49%), Positives = 122/169 (72%), Gaps = 1/169 (0%)
Query: 6   DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTA 65
           D+  ++++IG  GVGK+ L+ RF DD++ E+  ST+GVDFKI+TVE  GK I+LQIWDTA
Sbjct: 24  DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTA 83
Query: 66  GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL 125
           GQERF +ITS+YYR A GII+VYD+T +E+F+++ +W+  ID+YASE+   LLVGNK D 
Sbjct: 84  GQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDC 143
Query: 126 TANKVVSYETAKAFADEI-GIPFMETSAKSATNVEQAFMAMAASIKNRM 173
             ++ ++ +  + FA +I G+ F E SAK   NV++ F+ +   I  +M
Sbjct: 144 ETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKM 192

>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196

Iteration: 1
 Score =  176 bits (446), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 82/165 (49%), Positives = 112/165 (67%)
Query: 5   YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDT 64
           Y Y+FK ++IGD GVGKSCLL +F +  ++     TIGV+F  R +E  G+ IKLQIWDT
Sbjct: 27  YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDT 86
Query: 65  AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCD 124
           AGQ RFR +T SYYRGA G ++VYD+T + ++N++  WL +     + N   +L+GNK D
Sbjct: 87  AGQGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKAD 146
Query: 125 LTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
           L A + V+YE AK FA+E G+ F+E SAK+  NVE AF+  A  I
Sbjct: 147 LEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 191

>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186

Iteration: 1
 Score =  172 bits (437), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 83/175 (47%), Positives = 120/175 (68%)
Query: 1   MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ 60
           M+  YD+LFK L+IG++G GKSCLL +F +  + +    TIGV+F  + +   GK +KLQ
Sbjct: 3   MSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQ 62
Query: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120
           IWDTAGQERFR++T SYYRGA G ++VYD+T +E++N +  WL +    AS+N+  +L G
Sbjct: 63  IWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCG 122
Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMAS 175
           NK DL A++ V++  A  FA E  + F+ETSA +  NVE+AF+  A  I N++ S
Sbjct: 123 NKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIES 177

>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181

Iteration: 1
 Score =  172 bits (435), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 92/179 (51%), Positives = 123/179 (68%), Gaps = 3/179 (1%)
Query: 5   YDYLFKLLLIGDSGVGKSCLLLRFADDSY-LESYISTIGVDFKIRTVE-QDGKTIKLQIW 62
           YDYLFK++LIGDSGVGKS LL RF  D + LES  STIGV+F  ++++ ++ K IK QIW
Sbjct: 4   YDYLFKIVLIGDSGVGKSNLLSRFTRDEFNLESK-STIGVEFATKSIQLKNNKIIKAQIW 62
Query: 63  DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNK 122
           DTAGQER+R ITS+YYRGA G ++VYD+T + SF N+++WL E+   A  N+  LLVGNK
Sbjct: 63  DTAGQERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADSNIVILLVGNK 122
Query: 123 CDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNN 181
            DL   +V++   A  +A +  + F+ETSA  ATNVE AF  +   I N    + A+ N
Sbjct: 123 SDLKHLRVINDNDATQYAKKEKLAFIETSALEATNVELAFHQLLNEIYNVRQKKQATKN 181

>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200

Iteration: 1
 Score =  171 bits (434), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 83/170 (48%), Positives = 117/170 (68%)
Query: 6   DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTA 65
           D+LFK L+IG +G GKSCLL +F ++ + +    TIGV+F  R V   GKT+KLQIWDTA
Sbjct: 23  DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTA 82
Query: 66  GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL 125
           GQERFR++T SYYRGA G ++VYD+T +E++N++  WL +    AS N+  +L GNK DL
Sbjct: 83  GQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDL 142
Query: 126 TANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMAS 175
              + V++  A  FA E  + F+ETSA +  NVE+AF+  A +I N++ S
Sbjct: 143 DPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIDS 192

>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223

Iteration: 1
 Score =  171 bits (433), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 94/215 (43%), Positives = 129/215 (60%), Gaps = 17/215 (7%)
Query: 4   EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWD 63
           +YD LFK++LIGDSGVGKS LL RF  + +     STIGV+F  RT+E +GK IK QIWD
Sbjct: 9   DYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWD 68
Query: 64  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKC 123
           TAGQER+R ITS+YYRGA G ++VYD++   S+ N   WL+E+   A +NV   L+GNK 
Sbjct: 69  TAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKS 128
Query: 124 DLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQ------- 176
           DL   + V  E +K FA E  + F ETSA ++ NV++AF  +  +I  +++         
Sbjct: 129 DLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQMDLGDS 188
Query: 177 PASNNA------RPPTVQIRGQPVNQK----SGCC 201
            A+ NA        PT+ +   P   K    + CC
Sbjct: 189 SANGNANGASAPNGPTISLTPTPNENKKANGNNCC 223

>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175

Iteration: 1
 Score =  167 bits (423), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 80/168 (47%), Positives = 116/168 (69%)
Query: 5   YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDT 64
           YD+LFK L+IG++G GKSCLL +F +  + +    TIGV+F  + +   GK +KLQIWDT
Sbjct: 8   YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDT 67
Query: 65  AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCD 124
           AGQERFR++T SYYRGA G ++VYD+T +E++N +  WL +    AS+N+  +L GNK D
Sbjct: 68  AGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKD 127
Query: 125 LTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
           L A++ V++  A  FA E  + F+ETSA +  +VE+AF+  A  I N+
Sbjct: 128 LDADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKILNK 175

>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185

Iteration: 1
 Score =  167 bits (422), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 86/169 (50%), Positives = 112/169 (66%)
Query: 1   MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ 60
           M  +YDYLFK++LIGDSGVGKS LL RF  D +     STIGV+F  RT+E + K IK Q
Sbjct: 3   MGYDYDYLFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQ 62
Query: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120
           IWDTAG ER+R ITS+YYRGA G ++VYD++   S+ N   WL E+   A +NV   L+G
Sbjct: 63  IWDTAGLERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIG 122
Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
           NK DL   + V  + AK FA E  + F ETSA ++ NV++AF  +  +I
Sbjct: 123 NKSDLAHLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAFRELIVAI 171

>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172

Iteration: 1
 Score =  164 bits (415), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 79/168 (47%), Positives = 115/168 (68%)
Query: 5   YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDT 64
           YD+LFK L+IG++G GKSCLL +F +  + +    TIGV+F  + +   GK +KLQIWDT
Sbjct: 5   YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDT 64
Query: 65  AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCD 124
           AG ERFR++T SYYRGA G ++VYD+T +E++N +  WL +    AS+N+  +L GNK D
Sbjct: 65  AGLERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKD 124
Query: 125 LTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
           L A++ V++  A  FA E  + F+ETSA +  +VE+AF+  A  I N+
Sbjct: 125 LDADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKILNK 172

>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179

Iteration: 1
 Score =  164 bits (414), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 79/161 (49%), Positives = 108/161 (67%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           FKL+L+G+S VGKS L+LRF    + E   STIG  F  ++V  D  T+K +IWDTAGQE
Sbjct: 9   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQE 68
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
           R+ ++   YYRGA   IVVYD+T+QE+F   K W+ E+ R AS ++   L GNK DL   
Sbjct: 69  RYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANK 128
Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
           ++V YE A+A+AD+  + FMETSAK+A NV   F+A+A  +
Sbjct: 129 RMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKL 169

>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164

Iteration: 1
 Score =  163 bits (413), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 78/161 (48%), Positives = 108/161 (67%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           FKL+L+G+S VGKS L+LRF    + E   STIG  F  +TV  D  T+K +IWDTAGQE
Sbjct: 4   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 63
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
           R+ ++   YYRGA   IVVYD+T+ ++F   K W+ E+ R AS N+   L GNK DL + 
Sbjct: 64  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 123
Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
           + V ++ A+A+AD+  + FMETSAK+A NV + FMA+A  +
Sbjct: 124 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 164

>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170

Iteration: 1
 Score =  162 bits (410), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 78/161 (48%), Positives = 108/161 (67%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           FKL+L+G+S VGKS L+LRF    + E   STIG  F  +TV  D  T+K +IWDTAGQE
Sbjct: 7   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
           R+ ++   YYRGA   IVVYD+T++ESF   K W+ E+ R AS N+   L GNK DL   
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
           + V ++ A+++AD+  + FMETSAK++ NV + FMA+A  +
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171

Iteration: 1
 Score =  162 bits (410), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 78/161 (48%), Positives = 108/161 (67%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           FKL+L+G+S VGKS L+LRF    + E   STIG  F  +TV  D  T+K +IWDTAGQE
Sbjct: 8   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
           R+ ++   YYRGA   IVVYD+T++ESF   K W+ E+ R AS N+   L GNK DL   
Sbjct: 68  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 127
Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
           + V ++ A+++AD+  + FMETSAK++ NV + FMA+A  +
Sbjct: 128 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 168

>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170

Iteration: 1
 Score =  161 bits (408), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 78/161 (48%), Positives = 108/161 (67%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           FKL+L+G+S VGKS L+LRF    + E   STIG  F  +TV  D  T+K +IWDTAGQE
Sbjct: 7   FKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
           R+ ++   YYRGA   IVVYD+T++ESF   K W+ E+ R AS N+   L GNK DL   
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
           + V ++ A+++AD+  + FMETSAK++ NV + FMA+A  +
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  161 bits (408), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 78/161 (48%), Positives = 108/161 (67%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           FKL+L+G+S VGKS L+LRF    + E   STIG  F  +TV  D  T+K +IWDTAGQE
Sbjct: 7   FKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
           R+ ++   YYRGA   IVVYD+T++ESF   K W+ E+ R AS N+   L GNK DL   
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
           + V ++ A+++AD+  + FMETSAK++ NV + FMA+A  +
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  161 bits (408), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 78/161 (48%), Positives = 108/161 (67%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           FKL+L+G+S VGKS L+LRF    + E   STIG  F  +TV  D  T+K +IWDTAGQE
Sbjct: 7   FKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
           R+ ++   YYRGA   IVVYD+T++ESF   K W+ E+ R AS N+   L GNK DL   
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
           + V ++ A+++AD+  + FMETSAK++ NV + FMA+A  +
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  161 bits (408), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 78/161 (48%), Positives = 108/161 (67%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           FKL+L+G+S VGKS L+LRF    + E   STIG  F  +TV  D  T+K +IWDTAGQE
Sbjct: 7   FKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
           R+ ++   YYRGA   IVVYD+T++ESF   K W+ E+ R AS N+   L GNK DL   
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
           + V ++ A+++AD+  + FMETSAK++ NV + FMA+A  +
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  160 bits (406), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 78/161 (48%), Positives = 108/161 (67%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           FKL+L+G+S VGKS L+LRF    + E   STIG  F  +TV  D  T+K +IWDTAGQE
Sbjct: 7   FKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
           R+ ++   YYRGA   IVVYD+T++ESF   K W+ E+ R AS N+   L GNK DL   
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
           + V ++ A+++AD+  + FMETSAK++ NV + FMA+A  +
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167

Iteration: 1
 Score =  160 bits (405), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 77/161 (47%), Positives = 107/161 (66%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           FKL+L+G+S VGKS L+LRF    + E   STIG  F  +TV  D  T+K +IWDTAG E
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
           R+ ++   YYRGA   IVVYD+T+ ++F   K W+ E+ R AS N+   L GNK DL + 
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 125
Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
           + V ++ A+A+AD+  + FMETSAK+A NV + FMA+A  +
Sbjct: 126 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166

>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166

Iteration: 1
 Score =  160 bits (405), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 77/161 (47%), Positives = 107/161 (66%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           FKL+L+G+S VGKS L+LRF    + E   STI   F  +TV  D  T+K +IWDTAGQE
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQE 65
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
           R+ ++   YYRGA   IVVYD+T+ ++F   K W+ E+ R AS N+   L GNK DL + 
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 125
Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
           + V ++ A+A+AD+  + FMETSAK+A NV + FMA+A  +
Sbjct: 126 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166

>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168

Iteration: 1
 Score =  159 bits (403), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 77/161 (47%), Positives = 107/161 (66%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           FKL+L+G+S VGKS L+LRF    + E   STIG  F  +TV  D  T+K +IWDTAG E
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
           R+ ++   YYRGA   IVVYD+T++ESF   K W+ E+ R AS N+   L GNK DL   
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 125
Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
           + V ++ A+++AD+  + FMETSAK++ NV + FMA+A  +
Sbjct: 126 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 166

>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195

Iteration: 1
 Score =  159 bits (401), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 83/179 (46%), Positives = 111/179 (62%), Gaps = 2/179 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K+L+IG+SGVGKS LLLRF DD++     +TIGVDFK++T+  DG   KL IWDTAGQE
Sbjct: 16  LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 75
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASEN-VNKLLVGNKCDLTA 127
           RFRT+T SYYRGA G+I+VYDVT +++F  +  WLNE++ Y + N +   LVGNK D   
Sbjct: 76  RFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVGNKID-KE 134
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPT 186
           N+ V       FA +    F+E SAK+   V+ AF  +   I        + N    P+
Sbjct: 135 NREVDRNEGLKFARKHSXLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESENQNSGPS 193

>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171

Iteration: 1
 Score =  157 bits (397), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 76/161 (47%), Positives = 106/161 (65%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           FKL+L+G+S VGKS L+LRF    + E   STIG  F  +TV  D  T+K +IWDTAGQE
Sbjct: 8   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
           R+ ++   YYRGA   IVVYD+T++ESF   K W+ E+ R AS N+   L GNK DL   
Sbjct: 68  RYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 127
Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
           + V ++ A+++AD+  + F ETSAK++ NV + F A+A  +
Sbjct: 128 RAVDFQEAQSYADDNSLLFXETSAKTSXNVNEIFXAIAKKL 168

>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193

Iteration: 1
 Score =  157 bits (396), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 77/175 (44%), Positives = 117/175 (66%)
Query: 2   NNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQI 61
           + +Y+++FK++LIG+SGVGK+ LL RF  + +     +TIGV+F  RTV      +K QI
Sbjct: 19  SEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQI 78
Query: 62  WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGN 121
           WDTAG ER+R ITS+YYRGA G ++V+D+T  +++  V++WL E+  +A   +  +LVGN
Sbjct: 79  WDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGN 138
Query: 122 KCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQ 176
           K DL+  + V  E A+ FA+  G+ F+ETSA  +TNVE AF  +   I  +++ Q
Sbjct: 139 KSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 193

>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178

Iteration: 1
 Score =  156 bits (395), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 77/173 (44%), Positives = 116/173 (67%)
Query: 4   EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWD 63
           +Y+++FK++LIG+SGVGK+ LL RF  + +     +TIGV+F  RTV      +K QIWD
Sbjct: 6   DYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWD 65
Query: 64  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKC 123
           TAG ER+R ITS+YYRGA G ++V+D+T  +++  V++WL E+  +A   +  +LVGNK 
Sbjct: 66  TAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKS 125
Query: 124 DLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQ 176
           DL+  + V  E A+ FA+  G+ F+ETSA  +TNVE AF  +   I  +++ Q
Sbjct: 126 DLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 178

>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217

Iteration: 1
 Score =  156 bits (395), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 77/181 (42%), Positives = 118/181 (65%), Gaps = 11/181 (6%)
Query: 4   EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTV--------EQDGK 55
           +YDYL KLL +GDSGVGK+  L R+ D+ +   +I+T+G+DF+ + V           GK
Sbjct: 21  DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGK 80
Query: 56  TIK--LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SE 112
             K  LQ+WDTAGQERFR++T++++R A G ++++D+T Q+SF NV+ W++++   A  E
Sbjct: 81  AFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCE 140
Query: 113 NVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
           N + +L+GNK DL   + V+   A+  AD+ GIP+ ETSA +  NVE+A   +   I  R
Sbjct: 141 NPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKR 200
Query: 173 M 173
           M
Sbjct: 201 M 201

>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220

Iteration: 1
 Score =  152 bits (385), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 82/217 (37%), Positives = 131/217 (60%), Gaps = 19/217 (8%)
Query: 2   NNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQD-------- 53
           + +YDYL KLL +GDSGVGK+  L R+ D+ +   +I+T+G+DF+ + V  D        
Sbjct: 5   DGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGAS 64
Query: 54  GKTIK--LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA- 110
           GK  K  LQ+WDTAG ERFR++T++++R A G ++++D+T Q+SF NV+ W++++   A 
Sbjct: 65  GKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAY 124
Query: 111 SENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIK 170
            EN + +L+GNK DL   + V+   A+  A++ GIP+ ETSA +  NVE++   +   I 
Sbjct: 125 CENPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIM 184
Query: 171 NRMASQPASNNARPPTV------QIRGQ-PVNQKSGC 200
            RM  +       P TV      ++ G+ P  +K  C
Sbjct: 185 KRM-EKCVEKTQVPDTVNGGNSGKLDGEKPAEKKCAC 220

>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189

Iteration: 1
 Score =  152 bits (385), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 74/170 (43%), Positives = 111/170 (65%), Gaps = 5/170 (2%)
Query: 8   LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
           +FK+++IGDS VGK+CL  RF    + +   +TIGVDF+ R V+ DG+ IK+Q+WDTAGQ
Sbjct: 20  IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 79
Query: 68  ERFR-TITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASEN-VNKLLVGNKCDL 125
           ERFR ++   YYR  H ++ VYD+T+  SF+++  W+ E  ++   N + ++LVGNKCDL
Sbjct: 80  ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 139
Query: 126 TANKVVSYETAKAFADEIGIPFMETSAKSAT---NVEQAFMAMAASIKNR 172
            +   V  + A+ FAD   +P  ETSAK+     +VE  FM +A  +K+ 
Sbjct: 140 RSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLKSH 189

>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200

Iteration: 1
 Score =  152 bits (384), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 75/183 (40%), Positives = 119/183 (65%), Gaps = 11/183 (6%)
Query: 2   NNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQD-------- 53
           + +YDYL KLL +GDSGVGK+  L R+ D+ +   +I+T+G+DF+ + V  D        
Sbjct: 5   DGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGAS 64
Query: 54  GKTIK--LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA- 110
           GK  K  LQ+WDTAG ERFR++T++++R A G ++++D+T Q+SF NV+ W++++   A 
Sbjct: 65  GKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAY 124
Query: 111 SENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIK 170
            EN + +L+GNK DL   + V+   A+  A++ GIP+ ETSA +  NVE++   +   I 
Sbjct: 125 CENPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIM 184
Query: 171 NRM 173
            RM
Sbjct: 185 KRM 187

>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181

Iteration: 1
 Score =  152 bits (383), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 77/171 (45%), Positives = 108/171 (63%), Gaps = 3/171 (1%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           KL+L+GD G GKS L+LRF  D ++E   STIG  F  +T+  +  T+K +IWDTAGQER
Sbjct: 14  KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73
Query: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANK 129
           + ++   YYRGA   I+V+DVT+Q SF   K+W+ E+    + N+   L GNK DL   +
Sbjct: 74  YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDAR 133
Query: 130 VVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASN 180
            V+ E A+ +A E G+ FMETSAK+ATNV++ F  +A  +      QP  N
Sbjct: 134 KVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPR---VQPTEN 181

>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195

Iteration: 1
 Score =  151 bits (382), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 72/183 (39%), Positives = 118/183 (64%), Gaps = 11/183 (6%)
Query: 2   NNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQD-------- 53
           + +YDYL K L +GDSGVGK+ +L ++ D  +   +I+T+G+DF+ + V           
Sbjct: 5   DGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAV 64
Query: 54  --GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA- 110
             G+ I LQ+WDTAG ERFR++T++++R A G ++++D+T+++SF NV+ W++++  +A 
Sbjct: 65  GRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAY 124
Query: 111 SENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIK 170
           SEN + +L GNK DL   + V  E A+  A++ GIP+ ETSA + TN+  A   +   I 
Sbjct: 125 SENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIM 184
Query: 171 NRM 173
            RM
Sbjct: 185 KRM 187

>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198

Iteration: 1
 Score =  148 bits (374), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 73/170 (42%), Positives = 108/170 (63%), Gaps = 5/170 (2%)
Query: 8   LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
           +FK+++IGDS VGK+CL  RF    + +   +TIGVDF+ R V+ DG+ IK+Q+WDTAGQ
Sbjct: 29  IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 88
Query: 68  ERFR-TITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASEN-VNKLLVGNKCDL 125
           ERFR ++   YYR  H ++ VYD T+  SF+++  W+ E  ++   N + ++LVGNKCDL
Sbjct: 89  ERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 148
Query: 126 TANKVVSYETAKAFADEIGIPFMETSAKSAT---NVEQAFMAMAASIKNR 172
            +   V  + A+ FAD    P  ETSAK+     +VE  F  +A  +K+ 
Sbjct: 149 RSAIQVPTDLAQKFADTHSXPLFETSAKNPNDNDHVEAIFXTLAHKLKSH 198

>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195

Iteration: 1
 Score =  148 bits (373), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 74/182 (40%), Positives = 116/182 (63%), Gaps = 11/182 (6%)
Query: 2   NNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQD-------- 53
           + +YDYL KLL +GDSGVGK+  L R+ D+ +   +I+T+G+DF+ + V  D        
Sbjct: 5   DGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGAS 64
Query: 54  GKTIK--LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA- 110
           GK  K  LQ+WDTAG ERFR++T++++R A G ++ +D+T Q+SF NV+ W +++   A 
Sbjct: 65  GKAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAY 124
Query: 111 SENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIK 170
            EN + +L+GNK DL   + V+   A+  A++ GIP+ ETSA +  NVE++   +   I 
Sbjct: 125 CENPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIX 184
Query: 171 NR 172
            R
Sbjct: 185 KR 186

>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203

Iteration: 1
 Score =  148 bits (373), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 74/182 (40%), Positives = 116/182 (63%), Gaps = 11/182 (6%)
Query: 2   NNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQD-------- 53
           + +YDYL KLL +GDSGVGK+  L R+ D+ +   +I+T+G+DF+ + V  D        
Sbjct: 5   DGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGAS 64
Query: 54  GKTIK--LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA- 110
           GK  K  LQ+WDTAG ERFR++T++++R A G ++ +D+T Q+SF NV+ W +++   A 
Sbjct: 65  GKAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAY 124
Query: 111 SENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIK 170
            EN + +L+GNK DL   + V+   A+  A++ GIP+ ETSA +  NVE++   +   I 
Sbjct: 125 CENPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIX 184
Query: 171 NR 172
            R
Sbjct: 185 KR 186

>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192

Iteration: 1
 Score =  145 bits (366), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 67/161 (41%), Positives = 101/161 (62%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K+ L+GD+GVGKS ++ RF  D +  +   TIG  F  +TV    +  K  IWDTAGQE
Sbjct: 24  LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE 83
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
           RF ++   YYRG+   ++VYD+T Q+SF  +K+W+ E+  +  EN+   + GNKCDL+  
Sbjct: 84  RFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDI 143
Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
           + V  + AK +A+ IG   +ETSAK+A N+E+ F  ++  I
Sbjct: 144 REVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQI 184

>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216

Iteration: 1
 Score =  145 bits (365), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 77/199 (38%), Positives = 123/199 (61%), Gaps = 10/199 (5%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           FKL+ +G+  VGK+ L+ RF  DS+  +Y +TIG+DF  +T+  + +TI+LQ+WDTAG E
Sbjct: 14  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLE 73
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
           RFR++  SY R +   +VVYD+T+  SF    +W++++      +V  +LVGNK DL   
Sbjct: 74  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 133
Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQ 188
           + VS E  +  A E+ + F+ETSAK+  NV+Q F  +AA++    ++Q   + +R   + 
Sbjct: 134 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQ---DRSREDMID 190
Query: 189 IR-----GQPVNQKSGCCS 202
           I+      QPV++  G CS
Sbjct: 191 IKLEKPQEQPVSE--GGCS 207

>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170

Iteration: 1
 Score =  144 bits (363), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 69/161 (42%), Positives = 107/161 (66%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           FKL+ +G+  VGK+ L+ RF  DS+  +Y +TIG+DF  +T+  + +TI+LQ+WDTAGQE
Sbjct: 7   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 66
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
           RFR++  SY R +   +VVYD+T+  SF    +W++++      +V  +LVGNK DL   
Sbjct: 67  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 126
Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
           + VS E  +  A E+ + F+ETSAK+  NV+Q F  +AA++
Sbjct: 127 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 167

>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199

Iteration: 1
 Score =  144 bits (362), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 70/170 (41%), Positives = 109/170 (64%), Gaps = 6/170 (3%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +K++L GD+ VGKS  L+R   + + E+  +T+GVDF+++T+  DG+   LQ+WDTAGQE
Sbjct: 29  YKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQE 88
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL--- 125
           RFR+I  SY+R A G++++YDVT ++SF N+++W++ I+  A E V  +LVGNK D+   
Sbjct: 89  RFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDT 148
Query: 126 ---TANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
                 K V     +  A   G  F ETSAK  +N+ +A + +A  +K R
Sbjct: 149 AATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVKKR 198

>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169

Iteration: 1
 Score =  144 bits (362), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 68/161 (42%), Positives = 103/161 (63%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K+ L+GD+GVGKS ++ RF +DS+  +   TIG  F  +TV+   +  K  IWDTAGQE
Sbjct: 6   LKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQE 65
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
           RFR +   YYRG+   I+VYD+T +E+F+ +K W+ E+ ++   ++   + GNKCDLT  
Sbjct: 66  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 125
Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
           + V    AK +AD I   F+ETSAK+A N+ + F+ ++  I
Sbjct: 126 REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 166

>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179

Iteration: 1
 Score =  144 bits (362), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 68/161 (42%), Positives = 109/161 (67%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           FKL+ +G+  VGK+ L+ RF  DS+  +Y +TIG+DF  +T+  + +T++LQ+WDTAGQE
Sbjct: 15  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 74
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
           RFR++  SY R +   +VVYD+T+  SF+   +W++++      +V  +LVGNK DL+  
Sbjct: 75  RFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK 134
Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
           + VS E  +  A E+ + F+ETSAK+  NV+Q F  +AA++
Sbjct: 135 RQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 175

>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211

Iteration: 1
 Score =  142 bits (359), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 75/198 (37%), Positives = 122/198 (61%), Gaps = 9/198 (4%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           FKL+ +G+  VGK+ L+ RF  DS+  +Y +TIG+DF  +T+  + +T++LQ+WDTAG E
Sbjct: 17  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 76
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
           RFR++  SY R +   +VVYD+T+  SF    +W++++      +V  +LVGNK DL   
Sbjct: 77  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 136
Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQ 188
           + VS E  +  A E+ + F+ETSAK+  NV+Q F  +AA++    ++Q   + +R   + 
Sbjct: 137 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQ---DRSREDMID 193
Query: 189 IR-----GQPVNQKSGCC 201
           I+      QPV++  GC 
Sbjct: 194 IKLEKPQEQPVSE-GGCL 210

>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162

Iteration: 1
 Score =  142 bits (357), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 68/161 (42%), Positives = 107/161 (66%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           FKL+ +G+  VGK+ L+ RF  DS+  +Y +TIG+DF  +T+  + +T++LQ+WDTAGQE
Sbjct: 2   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 61
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
           RFR++  SY R +   +VVYD+T+  SF    +W++++      +V  +LVGNK DL   
Sbjct: 62  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 121
Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
           + VS E  +  A E+ + F+ETSAK+  NV+Q F  +AA++
Sbjct: 122 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 162

>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170

Iteration: 1
 Score =  141 bits (356), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 67/161 (41%), Positives = 102/161 (63%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K+ L+GD+GVGKS ++ RF +DS+  +   TIG  F  +TV+   +  K  IWDTAG E
Sbjct: 7   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
           RFR +   YYRG+   I+VYD+T +E+F+ +K W+ E+ ++   ++   + GNKCDLT  
Sbjct: 67  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 126
Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
           + V    AK +AD I   F+ETSAK+A N+ + F+ ++  I
Sbjct: 127 REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 167

>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188

Iteration: 1
 Score =  140 bits (354), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 69/171 (40%), Positives = 110/171 (64%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           FKL+ +G+  VGK+ L+ RF  DS+  +Y +TIG+DF  +T+  + +T++LQ+WDTAG E
Sbjct: 7   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 66
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
           RFR++  SY R +   +VVYD+T+  SF    +W++++      +V  +LVGNK DL   
Sbjct: 67  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 126
Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPAS 179
           + VS E  +  A E+ + F+ETSAK+  NV+Q F  +AA++    ++Q  S
Sbjct: 127 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRS 177

>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171

Iteration: 1
 Score =  140 bits (352), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 65/161 (40%), Positives = 107/161 (66%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           FKL+ +G+  VGK+ L+ RF  DS+  +Y +TIG+DF  +T+  + +T++LQ+WDTAGQE
Sbjct: 3   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 62
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
           RFR++  SY R +   +VVYD+T+  SF    +W++++      +V  +LVGNK DL   
Sbjct: 63  RFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADK 122
Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
           + ++ E  +  A E+ + F+ETSAK+  NV+Q F  +A+++
Sbjct: 123 RQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASAL 163

>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182

Iteration: 1
 Score =  137 bits (345), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 75/177 (42%), Positives = 114/177 (64%), Gaps = 11/177 (6%)
Query: 1   MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDG-KTIKL 59
           M++    + K++++GDSGVGK+ L+ R+ +D Y + Y +TIG DF  + V  DG K   +
Sbjct: 1   MSSRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATM 60
Query: 60  QIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNK--- 116
           Q+WDTAGQERF+++  ++YRGA   ++VYDVT+  SF N+K W +E   +A  NVN    
Sbjct: 61  QVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHA--NVNSPET 118
Query: 117 ---LLVGNKCDL-TANKVVSYETAKAFADEIG-IPFMETSAKSATNVEQAFMAMAAS 168
              +++GNK D   + K+VS ++A+  A  +G IP   TSAK+A NV+ AF  +A S
Sbjct: 119 FPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARS 175

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score =  136 bits (342), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 61/160 (38%), Positives = 101/160 (63%)
Query: 7   YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG 66
           Y FK++L+G+  VGK+ L+LR+ ++ + + +I+T+G  F  + +   GK + L IWDTAG
Sbjct: 5   YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAG 64
Query: 67  QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLT 126
           QERF  +   YYR ++G I+VYD+TD++SF  VK W+ E+ +     +   +VGNK DL 
Sbjct: 65  QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 124
Query: 127 ANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMA 166
             + VS + A+++A+ +G     TSAK    +E+ F+ + 
Sbjct: 125 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLC 164

>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184

Iteration: 1
 Score =  133 bits (334), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 60/160 (37%), Positives = 100/160 (62%)
Query: 7   YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG 66
           Y FK++L+G+  VGK+ L+LR+ ++ + + +I+T+   F  + +   GK + L IWDTAG
Sbjct: 19  YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAG 78
Query: 67  QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLT 126
           QERF  +   YYR ++G I+VYD+TD++SF  VK W+ E+ +     +   +VGNK DL 
Sbjct: 79  QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 138
Query: 127 ANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMA 166
             + VS + A+++A+ +G     TSAK    +E+ F+ + 
Sbjct: 139 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLC 178

>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170

Iteration: 1
 Score =  133 bits (334), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 60/163 (36%), Positives = 101/163 (61%)
Query: 7   YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG 66
           Y FK++L+G+  VGK+ L+LR+ ++ + + +I+T+   F  + +   GK + L IWDTAG
Sbjct: 5   YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAG 64
Query: 67  QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLT 126
           QERF  +   YYR ++G I+VYD+TD++SF  VK W+ E+ +     +   +VGNK DL 
Sbjct: 65  QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 124
Query: 127 ANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
             + VS + A+++A+ +G     TSAK    +E+ F+ +   +
Sbjct: 125 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 167

>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162

Iteration: 1
 Score =  133 bits (334), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 66/161 (40%), Positives = 101/161 (62%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+ +G+  VGK+ ++ RF  D++  +Y STIG+DF  +T+  D   ++LQ+WDTAGQE
Sbjct: 2   YKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQE 61
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
           RFR++  SY R +   IVVYD+T+++SF N  +W+ +I     ++V   LVGNK DL   
Sbjct: 62  RFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDL 121
Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
           + V+YE     A E    F ETSAK+  N++  F   A+ +
Sbjct: 122 RKVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLFKKTASKL 162

>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170

Iteration: 1
 Score =  131 bits (330), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 66/163 (40%), Positives = 97/163 (59%), Gaps = 3/163 (1%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           KL+L+G++ VGKS ++LRF  + + E+   TIG  F  + V  +  T+K +IWDTAGQER
Sbjct: 5   KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64
Query: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLT--- 126
           F ++   YYR A   +VVYDVT  +SF   + W+ E+   AS+++   LVGNK D     
Sbjct: 65  FASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEG 124
Query: 127 ANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
             + V+ E  +  A+E G+ F ETSAK+  NV   F+ +   I
Sbjct: 125 GERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167

>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207

Iteration: 1
 Score =  129 bits (323), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 69/171 (40%), Positives = 107/171 (62%), Gaps = 6/171 (3%)
Query: 1   MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ 60
           M +    L K++++GDSGVGK+ L+ ++ +  +   Y +TIG DF  + V  D + + +Q
Sbjct: 1   MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60
Query: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYAS----ENVNK 116
           IWDTAGQERF+++  ++YRGA   ++V+DVT   +F  +  W +E    AS    EN   
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 120
Query: 117 LLVGNKCDLTANKVVSYETAKAFA-DEIGIPFMETSAKSATNVEQAFMAMA 166
           +++GNK DL  N+ V+ + A+A+   +  IP+ ETSAK A NVEQAF  +A
Sbjct: 121 VVLGNKIDL-ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIA 170

>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer With An Active Conformation Of Switch Ii Length = 177

Iteration: 1
 Score =  129 bits (323), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 68/160 (42%), Positives = 101/160 (63%), Gaps = 6/160 (3%)
Query: 8   LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
           LFK++L+GD GVGKS L+ R+  + +      TIGV+F  + +E DG  + +QIWDTAGQ
Sbjct: 9   LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 68
Query: 68  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYAS----ENVNKLLVGNKC 123
           ERFR++ + +YRG+   ++ + V D +SF N+  W  E   YA     E+   +++GNK 
Sbjct: 69  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 128
Query: 124 DLTANKVVSYETAKAFADEIG-IPFMETSAKSATNVEQAF 162
           D++  + VS E A+A+  + G  P+ ETSAK ATNV  AF
Sbjct: 129 DISERQ-VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAF 167

>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177

Iteration: 1
 Score =  128 bits (322), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 68/160 (42%), Positives = 101/160 (63%), Gaps = 6/160 (3%)
Query: 8   LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
           LFK++L+GD GVGKS L+ R+  + +      TIGV+F  + +E DG  + +QIWDTAGQ
Sbjct: 7   LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 66
Query: 68  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYAS----ENVNKLLVGNKC 123
           ERFR++ + +YRG+   ++ + V D +SF N+  W  E   YA     E+   +++GNK 
Sbjct: 67  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 126
Query: 124 DLTANKVVSYETAKAFADEIG-IPFMETSAKSATNVEQAF 162
           D++  + VS E A+A+  + G  P+ ETSAK ATNV  AF
Sbjct: 127 DISERQ-VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAF 165

>pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185

Iteration: 1
 Score =  128 bits (321), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 69/171 (40%), Positives = 107/171 (62%), Gaps = 6/171 (3%)
Query: 1   MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ 60
           M +    L K++++GDSGVGK+ L+ ++ +  +   Y +TIG DF  + V  D + + +Q
Sbjct: 1   MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60
Query: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYAS----ENVNK 116
           IWDTAGQERF+++  ++YRGA   ++V+DVT   +F  +  W +E    AS    EN   
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 120
Query: 117 LLVGNKCDLTANKVVSYETAKAFA-DEIGIPFMETSAKSATNVEQAFMAMA 166
           +++GNK DL  N+ V+ + A+A+   +  IP+ ETSAK A NVEQAF  +A
Sbjct: 121 VVLGNKIDL-ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIA 170

>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179

Iteration: 1
 Score =  127 bits (320), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 67/160 (41%), Positives = 100/160 (62%), Gaps = 6/160 (3%)
Query: 8   LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
           LFK++L+GD GVGKS L+ R+  + +      TIGV+F  + +E DG  + +QIWDTAGQ
Sbjct: 11  LFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 70
Query: 68  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYAS----ENVNKLLVGNKC 123
           ERFR++ + +YRG+   ++ + V D +SF N+  W  E   YA     E+   +++GNK 
Sbjct: 71  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKT 130
Query: 124 DLTANKVVSYETAKAFADEIG-IPFMETSAKSATNVEQAF 162
           D+   + VS E A+A+  + G  P+ ETSAK +TNV  AF
Sbjct: 131 DIKERQ-VSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAF 169

>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207

Iteration: 1
 Score =  127 bits (320), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 68/171 (39%), Positives = 106/171 (61%), Gaps = 6/171 (3%)
Query: 1   MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ 60
           M +    L K++++GDSGVGK+ L+ ++ +  +   Y +TIG DF  + V  D + + +Q
Sbjct: 1   MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60
Query: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYAS----ENVNK 116
           IWDTAGQERF+++  ++YRGA   ++V+DVT   +F  +  W +E    AS    EN   
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 120
Query: 117 LLVGNKCDLTANKVVSYETAKAFA-DEIGIPFMETSAKSATNVEQAFMAMA 166
           +++GNK D   N+ V+ + A+A+   +  IP+ ETSAK A NVEQAF  +A
Sbjct: 121 VVLGNKIDF-ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIA 170

>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207

Iteration: 1
 Score =  126 bits (316), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 68/171 (39%), Positives = 106/171 (61%), Gaps = 6/171 (3%)
Query: 1   MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ 60
           M +    L K++++GDSGVGK+ L+ ++ +  +   Y +TIG DF  + V  D + + +Q
Sbjct: 1   MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60
Query: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYAS----ENVNK 116
           IWDTAG ERF+++  ++YRGA   ++V+DVT   +F  +  W +E    AS    EN   
Sbjct: 61  IWDTAGLERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 120
Query: 117 LLVGNKCDLTANKVVSYETAKAFA-DEIGIPFMETSAKSATNVEQAFMAMA 166
           +++GNK DL  N+ V+ + A+A+   +  IP+ ETSAK A NVEQAF  +A
Sbjct: 121 VVLGNKIDL-ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIA 170

>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score =  124 bits (310), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 67/160 (41%), Positives = 100/160 (62%), Gaps = 6/160 (3%)
Query: 8   LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
           L K++L+GD GVGKS L+ R+  + +      TIGV+F  R +E DG+ + LQIWDTAGQ
Sbjct: 7   LLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQ 66
Query: 68  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYAS----ENVNKLLVGNKC 123
           ERF+++ + +YRGA   ++ + V D++SF N+  W  E   YA     E+   +++GNK 
Sbjct: 67  ERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKV 126
Query: 124 DLTANKVVSYETAKAFADEIG-IPFMETSAKSATNVEQAF 162
           D   ++ V+ E A+ +  E G  P++ETSAK  TNV  AF
Sbjct: 127 D-KEDRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAF 165

>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168

Iteration: 1
 Score =  115 bits (287), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 64/166 (38%), Positives = 97/166 (58%), Gaps = 2/166 (1%)
Query: 8   LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
           L K++++G  GVGKS L L+F  D ++E Y  T    ++ + V  DG+ +++ I DTAGQ
Sbjct: 4   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQ 62
Query: 68  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLT 126
           E +  I  +Y+R   G + V+ +T+ ESF     +  +I R    ENV  LLVGNK DL 
Sbjct: 63  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 122
Query: 127 ANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
             + VS E AK  AD+  + ++ETSAK+  NV++ F  +   I+ R
Sbjct: 123 DKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRAR 168

>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206

Iteration: 1
 Score =  114 bits (284), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 63/166 (37%), Positives = 97/166 (58%), Gaps = 2/166 (1%)
Query: 8   LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
           L K++++G  GVGKS L L+F  D ++E Y  T    ++ + V  DG+ +++ I DTAGQ
Sbjct: 14  LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQ 72
Query: 68  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLT 126
           E +  I  +Y+R   G + V+ +T+ ESF     +  +I R    ENV  LLVGNK DL 
Sbjct: 73  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 132
Query: 127 ANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
             + VS E AK  A++  + ++ETSAK+  NV++ F  +   I+ R
Sbjct: 133 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRAR 178

>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178

Iteration: 1
 Score =  114 bits (284), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 101/171 (59%), Gaps = 3/171 (1%)
Query: 8   LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
           L K++++G  GVGKS L L+F  D ++E Y  T    ++ + V  DG+ +++ I DTAG 
Sbjct: 7   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGL 65
Query: 68  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASEN--VNKLLVGNKCDL 125
           E +  I  +Y+R   G ++V+ +T+ ESF    ++  +I R  +E   +  L+VGNK DL
Sbjct: 66  EDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDL 125
Query: 126 TANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQ 176
              + V  E A++ A+E G+ ++ETSAK+  NV++ F  +   I+ +  S+
Sbjct: 126 EERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREIRTKKMSE 176

>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174

Iteration: 1
 Score =  114 bits (284), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 101/171 (59%), Gaps = 3/171 (1%)
Query: 8   LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
           L K++++G  GVGKS L L+F  D ++E Y  T    ++ + V  DG+ +++ I DTAG 
Sbjct: 3   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGL 61
Query: 68  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASEN--VNKLLVGNKCDL 125
           E +  I  +Y+R   G ++V+ +T+ ESF    ++  +I R  +E   +  L+VGNK DL
Sbjct: 62  EDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDL 121
Query: 126 TANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQ 176
              + V  E A++ A+E G+ ++ETSAK+  NV++ F  +   I+ +  S+
Sbjct: 122 EERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREIRTKKMSE 172

>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187

Iteration: 1
 Score =  114 bits (284), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 63/166 (37%), Positives = 97/166 (58%), Gaps = 2/166 (1%)
Query: 8   LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
           L K++++G  GVGKS L L+F  D ++E Y  T    ++ + V  DG+ +++ I DTAGQ
Sbjct: 18  LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQ 76
Query: 68  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLT 126
           E +  I  +Y+R   G + V+ +T+ ESF     +  +I R    ENV  LLVGNK DL 
Sbjct: 77  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 136
Query: 127 ANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
             + VS E AK  A++  + ++ETSAK+  NV++ F  +   I+ R
Sbjct: 137 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRAR 182

>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175

Iteration: 1
 Score =  114 bits (284), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 63/166 (37%), Positives = 97/166 (58%), Gaps = 2/166 (1%)
Query: 8   LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
           L K++++G  GVGKS L L+F  D ++E Y  T    ++ + V  DG+ +++ I DTAGQ
Sbjct: 6   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQ 64
Query: 68  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLT 126
           E +  I  +Y+R   G + V+ +T+ ESF     +  +I R    ENV  LLVGNK DL 
Sbjct: 65  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 124
Query: 127 ANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
             + VS E AK  A++  + ++ETSAK+  NV++ F  +   I+ R
Sbjct: 125 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRAR 170

>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168

Iteration: 1
 Score =  112 bits (280), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 89/158 (56%), Gaps = 1/158 (0%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K++++G+  VGKS ++ R+    + + Y  TIGVDF  R ++ + + ++L +WDTAGQE
Sbjct: 6   IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
            F  IT +YYRGA   ++V+  TD+ESF  +  W  ++      ++   LV NK DL  +
Sbjct: 66  EFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-DIPTALVQNKIDLLDD 124
Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMA 166
             +  E A+  A  + + F  TS K   NV + F  +A
Sbjct: 125 SCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLA 162

>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score =  111 bits (278), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 61/165 (36%), Positives = 96/165 (58%), Gaps = 3/165 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V  DG+T  L I DTAGQE
Sbjct: 4   YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
            +  +   Y R   G + V+ + + +SF ++ Q+  +I R   S++V  +LVGNKCDL A
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
             V S + A+  A   GIP++ETSAK+   VE AF  +   I+  
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A Transforming And A Nontransforming Gly-12 Mutant Of P21-H-Ras Length = 166

Iteration: 1
 Score =  111 bits (277), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 61/165 (36%), Positives = 96/165 (58%), Gaps = 3/165 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V  DG+T  L I DTAGQE
Sbjct: 4   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
            +  +   Y R   G + V+ + + +SF ++ Q+  +I R   S++V  +LVGNKCDL A
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
             V S + A+  A   GIP++ETSAK+   VE AF  +   I+  
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score =  111 bits (277), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 61/165 (36%), Positives = 96/165 (58%), Gaps = 3/165 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V  DG+T  L I DTAGQE
Sbjct: 4   YKLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
            +  +   Y R   G + V+ + + +SF ++ Q+  +I R   S++V  +LVGNKCDL A
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
             V S + A+  A   GIP++ETSAK+   VE AF  +   I+  
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And Magnesium Length = 166

Iteration: 1
 Score =  110 bits (276), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 60/165 (36%), Positives = 95/165 (57%), Gaps = 3/165 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V  DG+T  L I DTAGQE
Sbjct: 4   YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
            +  +   Y R   G + V+ + + +SF ++ Q+  +I R   S++V  +LVGNKCDL A
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
            + V    A+  A   GIP++ETSAK+   VE AF  +   I+  
Sbjct: 122 GRTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In Complex With The Active Rala Length = 175

Iteration: 1
 Score =  110 bits (275), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 62/166 (37%), Positives = 96/166 (57%), Gaps = 2/166 (1%)
Query: 8   LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
           L K++++G  GVGKS L L+F  D ++E Y  T    ++ + V  DG+ +++ I DTAG 
Sbjct: 6   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGL 64
Query: 68  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLT 126
           E +  I  +Y+R   G + V+ +T+ ESF     +  +I R    ENV  LLVGNK DL 
Sbjct: 65  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 124
Query: 127 ANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
             + VS E AK  A++  + ++ETSAK+  NV++ F  +   I+ R
Sbjct: 125 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRAR 170

>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras And Inhibit Sos-Mediated Nucleotide Exchange Activity Length = 189

Iteration: 1
 Score =  109 bits (272), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 59/165 (35%), Positives = 95/165 (57%), Gaps = 3/165 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V  DG+T  L I DTAGQE
Sbjct: 5   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
            +  +   Y R   G + V+ + + +SF ++  +  +I R   SE+V  +LVGNKCDL  
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL-P 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
           ++ V  + A+  A   GIPF+ETSAK+   V+ AF  +   I+  
Sbjct: 123 SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKH 167

>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score =  105 bits (261), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 58/165 (35%), Positives = 94/165 (56%), Gaps = 3/165 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V  DG+T  L I DTAGQE
Sbjct: 5   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
            +  +   Y R   G + V+ + + +SF ++  +  +I R   SE+V  +LVGNK DL  
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDL-P 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
           ++ V  + A+  A   GIPF+ETSAK+   V+ AF  +   I+  
Sbjct: 123 SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKH 167

>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 219

Iteration: 1
 Score =  104 bits (259), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 63/189 (33%), Positives = 98/189 (51%), Gaps = 12/189 (6%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           FKL+L+GD G GK+  + R     + + YI+TIGV+    +   +   IK  +WDTAG E
Sbjct: 13  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 72
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
           +F  +   YY  A   I+++DVT + ++ NV  W  ++ R   EN+  +L GNK D+   
Sbjct: 73  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDVKER 131
Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQP-----ASNNAR 183
           KV +      F  +  + + + SAKS  N E+ F+ +A     ++A  P     AS    
Sbjct: 132 KVKA--KTITFHRKKNLQYYDISAKSNYNFEKPFLWLA----RKLAGNPQLEFVASPALA 185
Query: 184 PPTVQIRGQ 192
           PP VQ+  Q
Sbjct: 186 PPEVQVDEQ 194

>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras- Binding-Domain Of C-Raf1 Kinase (Rafrbd) Length = 167

Iteration: 1
 Score =  102 bits (254), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 59/163 (36%), Positives = 92/163 (56%), Gaps = 3/163 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++F    ++E Y  TI   ++ + VE D +   L+I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTE 62
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
           +F  +   Y +   G  +VY +T Q +FN+++    +I R   +E+V  +LVGNKCDL  
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122
Query: 128 NKVVSYETAKAFADE-IGIPFMETSAKSATNVEQAFMAMAASI 169
            +VV  E  +  A +     F+E+SAKS  NV + F  +   I
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176

Iteration: 1
 Score =  101 bits (251), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 88/161 (54%), Gaps = 3/161 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           FKL+L+GD G GK+  + R     + + Y++T+GV+        +   IK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
           +F  +   YY  A   I+++DVT + ++ NV  W  ++ R   EN+  +L GNK D+   
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 129
Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
           KV +   +  F  +  + + + SAKS  N E+ F+ +A  +
Sbjct: 130 KVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 204

Iteration: 1
 Score =  101 bits (251), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 88/161 (54%), Gaps = 3/161 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           FKL+L+GD G GK+  + R     + + Y++T+GV+        +   IK  +WDTAGQE
Sbjct: 4   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
           +F  +   YY  A   I+++DVT + ++ NV  W  ++ R   EN+  +L GNK D+   
Sbjct: 64  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 122
Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
           KV +   +  F  +  + + + SAKS  N E+ F+ +A  +
Sbjct: 123 KVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 161

>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216

Iteration: 1
 Score =  101 bits (251), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 88/161 (54%), Gaps = 3/161 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           FKL+L+GD G GK+  + R     + + Y++T+GV+        +   IK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
           +F  +   YY  A   I+++DVT + ++ NV  W  ++ R   EN+  +L GNK D+   
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 129
Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
           KV +   +  F  +  + + + SAKS  N E+ F+ +A  +
Sbjct: 130 KVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221

Iteration: 1
 Score =  101 bits (251), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 88/161 (54%), Gaps = 3/161 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           FKL+L+GD G GK+  + R     + + Y++T+GV+        +   IK  +WDTAGQE
Sbjct: 16  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
           +F  +   YY  A   I+++DVT + ++ NV  W  ++ R   EN+  +L GNK D+   
Sbjct: 76  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 134
Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
           KV +   +  F  +  + + + SAKS  N E+ F+ +A  +
Sbjct: 135 KVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 173

>pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177

Iteration: 1
 Score =  101 bits (251), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 87/161 (54%), Gaps = 3/161 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           FKL+L+GD G GK+  + R     + + Y+ T+GV+        +   IK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
           +F  +   YY  A   I+++DVT + ++ NV  W  ++ R   EN+  +L GNK D+   
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 129
Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
           KV +   +  F  +  + + + SAKS  N E+ F+ +A  +
Sbjct: 130 KVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216

Iteration: 1
 Score =  101 bits (251), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 88/161 (54%), Gaps = 3/161 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           FKL+L+GD G GK+  + R     + + Y++T+GV+        +   IK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
           +F  +   YY  A   I+++DVT + ++ NV  W  ++ R   EN+  +L GNK D+   
Sbjct: 71  KFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 129
Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
           KV +   +  F  +  + + + SAKS  N E+ F+ +A  +
Sbjct: 130 KVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216

Iteration: 1
 Score =  101 bits (251), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 88/161 (54%), Gaps = 3/161 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           FKL+L+GD G GK+  + R     + + Y++T+GV+        +   IK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
           +F  +   YY  A   I+++DVT + ++ NV  W  ++ R   EN+  +L GNK D+   
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 129
Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
           KV +   +  F  +  + + + SAKS  N E+ F+ +A  +
Sbjct: 130 KVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216

Iteration: 1
 Score =  101 bits (251), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 87/161 (54%), Gaps = 3/161 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           FKL+L+GD G GK+  + R     + + Y+ T+GV+        +   IK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
           +F  +   YY  A   I+++DVT + ++ NV  W  ++ R   EN+  +L GNK D+   
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 129
Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
           KV +   +  F  +  + + + SAKS  N E+ F+ +A  +
Sbjct: 130 KVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex Length = 167

Iteration: 1
 Score =  100 bits (250), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 58/163 (35%), Positives = 92/163 (56%), Gaps = 3/163 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++F    ++E Y  TI   ++ + VE D +   L+I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDAQQCMLEILDTAGTE 62
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
           +F  +   Y +   G  +VY +T Q +FN+++    +I R   +++V  +LVGNKCDL  
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLED 122
Query: 128 NKVVSYETAKAFADEI-GIPFMETSAKSATNVEQAFMAMAASI 169
            +VV  E  +  A +     F+E+SAKS  NV + F  +   I
Sbjct: 123 ERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e) Complexed With Gppnhp And The Ras-Binding-Domain Of Human C-Raf1, Residues 51-131 Length = 167

Iteration: 1
 Score =  100 bits (250), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 58/163 (35%), Positives = 92/163 (56%), Gaps = 3/163 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++F    +++ Y  TI   ++ + VE D +   L+I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTE 62
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
           +F  +   Y +   G  +VY +T Q +FN+++    +I R   +E+V  +LVGNKCDL  
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122
Query: 128 NKVVSYETAKAFADE-IGIPFMETSAKSATNVEQAFMAMAASI 169
            +VV  E  +  A +     F+E+SAKS  NV + F  +   I
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216

Iteration: 1
 Score =  100 bits (249), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 87/161 (54%), Gaps = 3/161 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           FKL+L+GD G GK+  + R     + + Y++T+GV+        +   IK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
           +F  +   YY  A   I+ +DVT + ++ NV  W  ++ R   EN+  +L GNK D+   
Sbjct: 71  KFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 129
Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
           KV +   +  F  +  + + + SAKS  N E+ F+ +A  +
Sbjct: 130 KVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1 Length = 169

Iteration: 1
 Score =  100 bits (248), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 58/163 (35%), Positives = 92/163 (56%), Gaps = 3/163 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++F    ++E Y  TI   ++ + VE D +   L+I DTAG E
Sbjct: 6   YKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDAQQCMLEILDTAGTE 64
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
           +F  +   Y +   G  +VY +T Q +FN+++    +I R   +++V  +LVGNKCDL  
Sbjct: 65  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLED 124
Query: 128 NKVVSYETAKAFADEI-GIPFMETSAKSATNVEQAFMAMAASI 169
            +VV  E  +  A +     F+E+SAKS  NV + F  +   I
Sbjct: 125 ERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 167

>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216

Iteration: 1
 Score =  100 bits (248), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 88/161 (54%), Gaps = 3/161 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           FKL+L+GD G GK+  + R     + + Y++T+GV+        +   IK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
           ++  +   YY  A   I+++DVT + ++ NV  W  ++ R   EN+  +L GNK D+   
Sbjct: 71  KYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 129
Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
           KV +   +  F  +  + + + SAKS  N E+ F+ +A  +
Sbjct: 130 KVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex Length = 221

Iteration: 1
 Score = 99.0 bits (245), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 87/161 (54%), Gaps = 3/161 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           FKL+L+GD G GK+  + R       + Y++T+GV+        +   IK  +WDTAGQE
Sbjct: 16  FKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
           +F  +   YY  A   I+++DVT + ++ NV  W  ++ R   EN+  +L GNK D+   
Sbjct: 76  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 134
Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
           KV +   +  F  +  + + + SAKS  N E+ F+ +A  +
Sbjct: 135 KVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 173

>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex Length = 172

Iteration: 1
 Score = 99.0 bits (245), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 90/169 (53%), Gaps = 7/169 (4%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           FKL+L+GD G GK+  + R     + + YI+TIGV+    +   +   IK  +WDTAG E
Sbjct: 6   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 65
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
           +F  +   YY  A   I+++DVT + ++ NV  W  ++ R   EN+  +L GNK D+   
Sbjct: 66  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDVKER 124
Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQP 177
           KV +      F  +  + + + SAKS  N E+ F+ +A     ++A  P
Sbjct: 125 KVKA--KTITFHRKKNLQYYDISAKSNYNFEKPFLWLA----RKLAGNP 167

>pdb|3ICQ|B Chain B, Karyopherin Nuclear State Length = 171

Iteration: 1
 Score = 99.0 bits (245), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 90/169 (53%), Gaps = 7/169 (4%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           FKL+L+GD G GK+  + R     + + YI+TIGV+    +   +   IK  +WDTAG E
Sbjct: 5   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 64
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
           +F  +   YY  A   I+++DVT + ++ NV  W  ++ R   EN+  +L GNK D+   
Sbjct: 65  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDVKER 123
Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQP 177
           KV +      F  +  + + + SAKS  N E+ F+ +A     ++A  P
Sbjct: 124 KVKA--KTITFHRKKNLQYYDISAKSNYNFEKPFLWLA----RKLAGNP 166

>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras Length = 166

Iteration: 1
 Score = 99.0 bits (245), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/165 (37%), Positives = 96/165 (58%), Gaps = 3/165 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++   + ++E Y  TI   ++ + V  DG+T  L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVEKYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
            +  +   Y R   G + V+ + + +SF ++ Q+  +I R   S++V  +LVGNKCDL A
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
             V S + A+  A   GIP++ETSAK+   VE AF  +   I+  
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex Length = 182

Iteration: 1
 Score = 98.6 bits (244), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 87/161 (54%), Gaps = 3/161 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           FKL+L+GD G GK+  + R     + + Y++T+GV+        +   IK  +WDTAG E
Sbjct: 13  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 72
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
           +F  +   YY  A   I+++DVT + ++ NV  W  ++ R   EN+  +L GNK D+   
Sbjct: 73  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 131
Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
           KV +   +  F  +  + + + SAKS  N E+ F+ +A  +
Sbjct: 132 KVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 170

>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export Complex Length = 176

Iteration: 1
 Score = 98.6 bits (244), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 87/161 (54%), Gaps = 3/161 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           FKL+L+GD G GK+  + R     + + Y++T+GV+        +   IK  +WDTAG E
Sbjct: 7   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 66
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
           +F  +   YY  A   I+++DVT + ++ NV  W  ++ R   EN+  +L GNK D+   
Sbjct: 67  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 125
Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
           KV +   +  F  +  + + + SAKS  N E+ F+ +A  +
Sbjct: 126 KVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 164

>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With Gtp Length = 167

Iteration: 1
 Score = 98.6 bits (244), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 58/143 (40%), Positives = 85/143 (59%), Gaps = 2/143 (1%)
Query: 21  KSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRG 80
           KS L ++F   +++E Y  TI  DF  + +E D     L+I DTAG E+F ++   Y + 
Sbjct: 16  KSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKN 74
Query: 81  AHGIIVVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTANKVVSYETAKAF 139
             G I+VY + +Q+SF ++K   ++I R    E V  +LVGNK DL + + VS    +A 
Sbjct: 75  GQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRAL 134
Query: 140 ADEIGIPFMETSAKSATNVEQAF 162
           A+E G PFMETSAKS T V++ F
Sbjct: 135 AEEWGCPFMETSAKSKTMVDELF 157

>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 189

Iteration: 1
 Score = 98.2 bits (243), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 61/165 (36%), Positives = 96/165 (58%), Gaps = 3/165 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V  DG+T  L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
            +  +   Y R   G + V+ + + +SF ++ Q+  +I R   S++V  +LVGNKCDL A
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
             V S + A+  A   GIP++ETSAK+   VE AF  +   I+  
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant Length = 216

Iteration: 1
 Score = 98.2 bits (243), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 87/161 (54%), Gaps = 3/161 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           FKL+L+GD G GK+  + R     + + Y++T+GV+        +   IK  +WDTAG E
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 70
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
           +F  +   YY  A   I+++DVT + ++ NV  W  ++ R   EN+  +L GNK D+   
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 129
Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
           KV +   +  F  +  + + + SAKS  N E+ F+ +A  +
Sbjct: 130 KVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 97.8 bits (242), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 61/165 (36%), Positives = 96/165 (58%), Gaps = 3/165 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V  DG+T  L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEESYR-KQVVIDGETCLLDILDTAGQE 62
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
            +  +   Y R   G + V+ + + +SF ++ Q+  +I R   S++V  +LVGNKCDL A
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
             V S + A+  A   GIP++ETSAK+   VE AF  +   I+  
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 97.4 bits (241), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 61/165 (36%), Positives = 96/165 (58%), Gaps = 3/165 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V  DG+T  L I DTAGQE
Sbjct: 9   YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 67
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
            +  +   Y R   G + V+ + + +SF ++ Q+  +I R   S++V  +LVGNKCDL A
Sbjct: 68  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 127
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
             V S + A+  A   GIP++ETSAK+   VE AF  +   I+  
Sbjct: 128 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 171

>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 97.4 bits (241), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 61/165 (36%), Positives = 96/165 (58%), Gaps = 3/165 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V  DG+T  L I DTAGQE
Sbjct: 9   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 67
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
            +  +   Y R   G + V+ + + +SF ++ Q+  +I R   S++V  +LVGNKCDL A
Sbjct: 68  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 127
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
             V S + A+  A   GIP++ETSAK+   VE AF  +   I+  
Sbjct: 128 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 171

>pdb|1WQ1|R Chain R, Ras-Rasgap Complex Length = 166

Iteration: 1
 Score = 97.4 bits (241), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 61/165 (36%), Positives = 96/165 (58%), Gaps = 3/165 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V  DG+T  L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
            +  +   Y R   G + V+ + + +SF ++ Q+  +I R   S++V  +LVGNKCDL A
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
             V S + A+  A   GIP++ETSAK+   VE AF  +   I+  
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 97.4 bits (241), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 61/165 (36%), Positives = 96/165 (58%), Gaps = 3/165 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V  DG+T  L I DTAGQE
Sbjct: 4   YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
            +  +   Y R   G + V+ + + +SF ++ Q+  +I R   S++V  +LVGNKCDL A
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
             V S + A+  A   GIP++ETSAK+   VE AF  +   I+  
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF Length = 166

Iteration: 1
 Score = 97.4 bits (241), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 61/165 (36%), Positives = 96/165 (58%), Gaps = 3/165 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V  DG+T  L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
            +  +   Y R   G + V+ + + +SF ++ Q+  +I R   S++V  +LVGNKCDL A
Sbjct: 63  EYSAMRDEYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
             V S + A+  A   GIP++ETSAK+   VE AF  +   I+  
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With The Ras-interacting Domain Of Ralgds Length = 167

Iteration: 1
 Score = 97.4 bits (241), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 61/164 (37%), Positives = 96/164 (58%), Gaps = 3/164 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V  DG+T  L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDKYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
            +  +   Y R   G + V+ + + +SF ++ Q+  +I R   S++V  +LVGNKCDL A
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKN 171
             V S + A+  A   GIP++ETSAK+   VE AF  +   I+ 
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 171

Iteration: 1
 Score = 97.1 bits (240), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 61/164 (37%), Positives = 96/164 (58%), Gaps = 3/164 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V  DG+T  L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
            +  +   Y R   G + V+ + + +SF ++ Q+  +I R   S++V  +LVGNKCDL A
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKN 171
             V S + A+  A   GIP++ETSAK+   VE AF  +   I+ 
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The Catalytic Domains Of Normal Ras Protein And An Oncogenic Mutant Complexed With Gsp Length = 171

Iteration: 1
 Score = 97.1 bits (240), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 61/164 (37%), Positives = 96/164 (58%), Gaps = 3/164 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V  DG+T  L I DTAGQE
Sbjct: 4   YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
            +  +   Y R   G + V+ + + +SF ++ Q+  +I R   S++V  +LVGNKCDL A
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKN 171
             V S + A+  A   GIP++ETSAK+   VE AF  +   I+ 
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras Length = 173

Iteration: 1
 Score = 97.1 bits (240), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 61/165 (36%), Positives = 96/165 (58%), Gaps = 3/165 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V  DG+T  L I DTAGQE
Sbjct: 11  YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 69
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
            +  +   Y R   G + V+ + + +SF ++ Q+  +I R   S++V  +LVGNKCDL A
Sbjct: 70  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 129
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
             V S + A+  A   GIP++ETSAK+   VE AF  +   I+  
Sbjct: 130 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 173

>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive (Gdp-3'p- Bound) Form Length = 178

Iteration: 1
 Score = 96.7 bits (239), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 87/165 (52%), Gaps = 4/165 (2%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGK-TIKLQIWDTAGQ 67
            K++++GD   GK+ L   FA +++ + Y  TIG+DF +R +   G   + LQIWD  GQ
Sbjct: 7   LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ 66
Query: 68  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNK---LLVGNKCD 124
                +   Y  GA G+++VYD+T+ +SF N++ W   + + + E+  +    LVGNK D
Sbjct: 67  TIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKID 126
Query: 125 LTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
           L   + +  E    F  E G      SAK+  +V   F  +AA I
Sbjct: 127 LEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEI 171

>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 96.7 bits (239), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 60/164 (36%), Positives = 96/164 (58%), Gaps = 3/164 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V  DG+T  L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
            +  +   Y R   G + V+ + + +SF ++ Q+  +I R   S++V  +LVGN+CDL A
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNRCDLAA 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKN 171
             V S + A+  A   GIP++ETSAK+   VE AF  +   I+ 
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp Length = 172

Iteration: 1
 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 60/165 (36%), Positives = 96/165 (58%), Gaps = 3/165 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++   + +++ Y  +I   ++ + V  DG+T  L I DTAGQE
Sbjct: 10  YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPSIEDSYR-KQVVIDGETCLLDILDTAGQE 68
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
            +  +   Y R   G + V+ + + +SF ++ Q+  +I R   S++V  +LVGNKCDL A
Sbjct: 69  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 128
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
             V S + A+  A   GIP++ETSAK+   VE AF  +   I+  
Sbjct: 129 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 172

>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser (T35s) Complexed With Guanosine-5'-[b,G-Imido] Triphosphate Length = 166

Iteration: 1
 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 60/165 (36%), Positives = 96/165 (58%), Gaps = 3/165 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++   + +++ Y  +I   ++ + V  DG+T  L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPSIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
            +  +   Y R   G + V+ + + +SF ++ Q+  +I R   S++V  +LVGNKCDL A
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
             V S + A+  A   GIP++ETSAK+   VE AF  +   I+  
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex With Rhogdi In Its Active Gppnhp-Bound Form Length = 195

Iteration: 1
 Score = 95.9 bits (237), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 97/182 (53%), Gaps = 17/182 (9%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           KL+++GD   GK+CLL+ F+ D + E Y+ T+  ++ +  +E DGK ++L +WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 67
Query: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTAN 128
           +  +    Y     I++ + +   +S  N+ ++W  E+  +   NV  +LVGNK DL  +
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRND 126
Query: 129 KVVSYETAKA------------FADEIG-IPFMETSAKSATNVEQAF-MAMAASIKNRMA 174
           +    E AK              A+ IG   +ME SAK+   V + F MA  A+++ R  
Sbjct: 127 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQARRG 186
Query: 175 SQ 176
            +
Sbjct: 187 KK 188

>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex Length = 193

Iteration: 1
 Score = 95.9 bits (237), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 97/182 (53%), Gaps = 17/182 (9%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           KL+++GD   GK+CLL+ F+ D + E Y+ T+  ++ +  +E DGK ++L +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTAN 128
           +  +    Y     I++ + +   +S  N+ ++W  E+  +   NV  +LVGNK DL  +
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRND 124
Query: 129 KVVSYETAKA------------FADEIG-IPFMETSAKSATNVEQAF-MAMAASIKNRMA 174
           +    E AK              A+ IG   +ME SAK+   V + F MA  A+++ R  
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQARRG 184
Query: 175 SQ 176
            +
Sbjct: 185 KK 186

>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of Ras Length = 166

Iteration: 1
 Score = 95.9 bits (237), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 60/165 (36%), Positives = 96/165 (58%), Gaps = 3/165 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGK+ L ++   + +++ Y  TI   ++ + V  DG+T  L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKNALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
            +  +   Y R   G + V+ + + +SF ++ Q+  +I R   S++V  +LVGNKCDL A
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
             V S + A+  A   GIP++ETSAK+   VE AF  +   I+  
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-Associated Rhogef In Complex With Rhoa Length = 196

Iteration: 1
 Score = 95.9 bits (237), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 97/182 (53%), Gaps = 17/182 (9%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           KL+++GD   GK+CLL+ F+ D + E Y+ T+  ++ +  +E DGK ++L +WDTAGQE 
Sbjct: 10  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 68
Query: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTAN 128
           +  +    Y     I++ + +   +S  N+ ++W  E+  +   NV  +LVGNK DL  +
Sbjct: 69  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRND 127
Query: 129 KVVSYETAKA------------FADEIG-IPFMETSAKSATNVEQAF-MAMAASIKNRMA 174
           +    E AK              A+ IG   +ME SAK+   V + F MA  A+++ R  
Sbjct: 128 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQARRG 187
Query: 175 SQ 176
            +
Sbjct: 188 KK 189

>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase Length = 166

Iteration: 1
 Score = 95.9 bits (237), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 60/165 (36%), Positives = 96/165 (58%), Gaps = 3/165 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++   + +++ +  TI   ++ + V  DG+T  L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEFDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
            +  +   Y R   G + V+ + + +SF ++ Q+  +I R   S++V  +LVGNKCDL A
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
             V S + A+  A   GIP++ETSAK+   VE AF  +   I+  
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology Domains Of Dbs In Complex With Rhoa Length = 192

Iteration: 1
 Score = 95.9 bits (237), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 97/182 (53%), Gaps = 17/182 (9%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           KL+++GD   GK+CLL+ F+ D + E Y+ T+  ++ +  +E DGK ++L +WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 67
Query: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTAN 128
           +  +    Y     I++ + +   +S  N+ ++W  E+  +   NV  +LVGNK DL  +
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRND 126
Query: 129 KVVSYETAKA------------FADEIG-IPFMETSAKSATNVEQAF-MAMAASIKNRMA 174
           +    E AK              A+ IG   +ME SAK+   V + F MA  A+++ R  
Sbjct: 127 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQARRG 186
Query: 175 SQ 176
            +
Sbjct: 187 KK 188

>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 95.9 bits (237), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 60/165 (36%), Positives = 95/165 (57%), Gaps = 3/165 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V  DG+T  L I DT GQE
Sbjct: 4   YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTTGQE 62
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
            +  +   Y R   G + V+ + + +SF ++ Q+  +I R   S++V  +LVGNKCDL A
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
             V S + A+  A   GIP++ETSAK+   VE AF  +   I+  
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form Length = 166

Iteration: 1
 Score = 95.9 bits (237), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 60/165 (36%), Positives = 95/165 (57%), Gaps = 3/165 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V  DG+T  L I DT GQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTGGQE 62
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
            +  +   Y R   G + V+ + + +SF ++ Q+  +I R   S++V  +LVGNKCDL A
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
             V S + A+  A   GIP++ETSAK+   VE AF  +   I+  
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/165 (36%), Positives = 95/165 (57%), Gaps = 3/165 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V  DG+T  L I DTAG E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGHE 62
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
            +  +   Y R   G + V+ + + +SF ++ Q+  +I R   S++V  +LVGNKCDL A
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
             V S + A+  A   GIP++ETSAK+   VE AF  +   I+  
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp Length = 166

Iteration: 1
 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/165 (36%), Positives = 96/165 (58%), Gaps = 3/165 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V  DG+T  L I DTAG+E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGKE 62
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
            +  +   Y R   G + V+ + + +SF ++ Q+  +I R   S++V  +LVGNKCDL A
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
             V S + A+  A   GIP++ETSAK+   VE AF  +   I+  
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/165 (36%), Positives = 95/165 (57%), Gaps = 3/165 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V  DG+T  L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
            +  +   Y R   G + V+ + + +SF ++ Q+  +I R   S++V  +LVGNKCDL A
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
             V S + A+  A   GIP++ETSAK+   VE AF  +    +  
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREFRQH 166

>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum, Pfb0500c Length = 208

Iteration: 1
 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/198 (31%), Positives = 96/198 (48%), Gaps = 40/198 (20%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVE----------------- 51
           +K +L+G+S VGKS ++LR   D++ E+  +TIG  F    V                  
Sbjct: 8   YKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNN 67
Query: 52  --------------------QDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVT 91
                               ++   IK  IWDTAGQER+ +I   YYRGA   IVV+D++
Sbjct: 68  INSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDIS 127
Query: 92  DQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETS 151
           +  + +  K W+N++    S N   +LV NK D    +V   E  K +A +  + F++TS
Sbjct: 128 NSNTLDRAKTWVNQLK--ISSNYIIILVANKIDKNKFQVDILEVQK-YAQDNNLLFIQTS 184
Query: 152 AKSATNVEQAFMAMAASI 169
           AK+ TN++  F  +A  I
Sbjct: 185 AKTGTNIKNIFYMLAEEI 202

>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-specific Nucleotide Exchange Factor Sos Length = 166

Iteration: 1
 Score = 95.1 bits (235), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 61/165 (36%), Positives = 95/165 (57%), Gaps = 3/165 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V  DG+T  L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
               +   Y R   G + V+ + + +SF ++ Q+  +I R   S++V  +LVGNKCDL A
Sbjct: 63  EASAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
             V S + A+  A   GIP++ETSAK+   VE AF  +   I+  
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By Isoleucine Length = 166

Iteration: 1
 Score = 95.1 bits (235), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/165 (36%), Positives = 95/165 (57%), Gaps = 3/165 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V  DG+   L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGEICLLDILDTAGQE 62
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
            +  +   Y R   G + V+ + + +SF ++ Q+  +I R   S++V  +LVGNKCDL A
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
             V S + A+  A   GIP++ETSAK+   VE AF  +   I+  
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 94.7 bits (234), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 60/165 (36%), Positives = 95/165 (57%), Gaps = 3/165 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V  DG+T  L I DTAG E
Sbjct: 9   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGLE 67
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
            +  +   Y R   G + V+ + + +SF ++ Q+  +I R   S++V  +LVGNKCDL A
Sbjct: 68  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 127
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
             V S + A+  A   GIP++ETSAK+   VE AF  +   I+  
Sbjct: 128 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 171

>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form Length = 166

Iteration: 1
 Score = 94.4 bits (233), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 60/165 (36%), Positives = 95/165 (57%), Gaps = 3/165 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V  DG+T  L I DTAG E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGGE 62
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
            +  +   Y R   G + V+ + + +SF ++ Q+  +I R   S++V  +LVGNKCDL A
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
             V S + A+  A   GIP++ETSAK+   VE AF  +   I+  
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+ (Complex A) Length = 185

Iteration: 1
 Score = 94.4 bits (233), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 57/176 (32%), Positives = 95/176 (53%), Gaps = 17/176 (9%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           KL+++GD   GK+CLL+ F+ D + E Y+ T+  ++ +  +E DGK ++L +WDTAGQE 
Sbjct: 11  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 69
Query: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTAN 128
           +  +    Y     I++ + +   +S  N+ ++W  E+  +   NV  +LVGNK DL  +
Sbjct: 70  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRND 128
Query: 129 KVVSYETAKA------------FADEIG-IPFMETSAKSATNVEQAF-MAMAASIK 170
           +    E AK              A+ IG   +ME SAK+   V + F MA  A+++
Sbjct: 129 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 184

>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 94.4 bits (233), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 60/165 (36%), Positives = 95/165 (57%), Gaps = 3/165 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V  DG+T  L I DTAG E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGLE 62
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
            +  +   Y R   G + V+ + + +SF ++ Q+  +I R   S++V  +LVGNKCDL A
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
             V S + A+  A   GIP++ETSAK+   VE AF  +   I+  
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein Rhod Length = 214

Iteration: 1
 Score = 94.4 bits (233), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 92/171 (53%), Gaps = 16/171 (9%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           K++L+GD G GK+ LL+ FAD ++ ESY  T+   + +  ++  GK + L IWDTAGQ+ 
Sbjct: 36  KVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMV-NLQVKGKPVHLHIWDTAGQDD 94
Query: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTAN 128
           +  +   +Y  A  +++ +DVT   SF+N+  +W  E++ +  + V  ++VG K DL  +
Sbjct: 95  YDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIVVGCKTDLRKD 153
Query: 129 K------------VVSYETAKAFADEIG-IPFMETSAKSATNVEQAFMAMA 166
           K             V+Y   +  A  +G + ++E SA+   NV   F   A
Sbjct: 154 KSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAA 204

>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g Length = 166

Iteration: 1
 Score = 94.0 bits (232), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 60/165 (36%), Positives = 95/165 (57%), Gaps = 3/165 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V  DG+T  L I DTAG E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETXLLDILDTAGGE 62
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
            +  +   Y R   G + V+ + + +SF ++ Q+  +I R   S++V  +LVGNKCDL A
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
             V S + A+  A   GIP++ETSAK+   VE AF  +   I+  
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH DOMAINS WITH GTP- Gamma-S Activated Rhoa Length = 182

Iteration: 1
 Score = 94.0 bits (232), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 57/176 (32%), Positives = 95/176 (53%), Gaps = 17/176 (9%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           KL+++GD   GK+CLL+ F+ D + E Y+ T+  ++ +  +E DGK ++L +WDTAGQE 
Sbjct: 8   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 66
Query: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTAN 128
           +  +    Y     I++ + +   +S  N+ ++W  E+  +   NV  +LVGNK DL  +
Sbjct: 67  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRND 125
Query: 129 KVVSYETAKA------------FADEIG-IPFMETSAKSATNVEQAF-MAMAASIK 170
           +    E AK              A+ IG   +ME SAK+   V + F MA  A+++
Sbjct: 126 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 181

>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp Length = 166

Iteration: 1
 Score = 94.0 bits (232), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 60/165 (36%), Positives = 95/165 (57%), Gaps = 3/165 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V  DG+T  L I DTAG E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGVE 62
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
            +  +   Y R   G + V+ + + +SF ++ Q+  +I R   S++V  +LVGNKCDL A
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
             V S + A+  A   GIP++ETSAK+   VE AF  +   I+  
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa And Rho-Binding Domain Of Human Rocki Length = 183

Iteration: 1
 Score = 94.0 bits (232), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 57/176 (32%), Positives = 95/176 (53%), Gaps = 17/176 (9%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           KL+++GD   GK+CLL+ F+ D + E Y+ T+  ++ +  +E DGK ++L +WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 67
Query: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTAN 128
           +  +    Y     I++ + +   +S  N+ ++W  E+  +   NV  +LVGNK DL  +
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRND 126
Query: 129 KVVSYETAKA------------FADEIG-IPFMETSAKSATNVEQAF-MAMAASIK 170
           +    E AK              A+ IG   +ME SAK+   V + F MA  A+++
Sbjct: 127 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 182

>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp Length = 166

Iteration: 1
 Score = 94.0 bits (232), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 60/165 (36%), Positives = 95/165 (57%), Gaps = 3/165 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V  DG+T  L I DTAG E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGIE 62
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
            +  +   Y R   G + V+ + + +SF ++ Q+  +I R   S++V  +LVGNKCDL A
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
             V S + A+  A   GIP++ETSAK+   VE AF  +   I+  
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The Effector Domain Of The Protein Kinase PknPRK1 Length = 182

Iteration: 1
 Score = 93.6 bits (231), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 57/176 (32%), Positives = 95/176 (53%), Gaps = 17/176 (9%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           KL+++GD   GK+CLL+ F+ D + E Y+ T+  ++ +  +E DGK ++L +WDTAGQE 
Sbjct: 8   KLVIVGDVACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 66
Query: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTAN 128
           +  +    Y     I++ + +   +S  N+ ++W  E+  +   NV  +LVGNK DL  +
Sbjct: 67  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRND 125
Query: 129 KVVSYETAKA------------FADEIG-IPFMETSAKSATNVEQAF-MAMAASIK 170
           +    E AK              A+ IG   +ME SAK+   V + F MA  A+++
Sbjct: 126 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 181

>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State Length = 207

Iteration: 1
 Score = 93.6 bits (231), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 97/182 (53%), Gaps = 17/182 (9%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           KL+++GD   GK+CLL+ F+ D + E Y+ T+  ++ +  +E DGK ++L +WDTAGQE 
Sbjct: 27  KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 85
Query: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTAN 128
           +  +    Y     I++ + V   +S  N+ ++W+ E+  +   NV  +LV NK DL ++
Sbjct: 86  YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCP-NVPIILVANKKDLRSD 144
Query: 129 KVVSYETAKAFADEI-------------GIPFMETSAKSATNVEQAF-MAMAASIKNRMA 174
           + V  E A+   + +                ++E SAK+   V + F  A  A+++ R  
Sbjct: 145 EHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQKRYG 204
Query: 175 SQ 176
           SQ
Sbjct: 205 SQ 206

>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue Length = 187

Iteration: 1
 Score = 93.6 bits (231), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 58/165 (35%), Positives = 94/165 (56%), Gaps = 3/165 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V  DG+T  L I DTAG E
Sbjct: 22  YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGHE 80
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
            +  +   Y R   G + V+ + + +SF ++  +  +I R   SE+V  +LVGNKCDL +
Sbjct: 81  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS 140
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
            + V  + A+  A   GIPF+ETSAK+   V+ AF  +   I+  
Sbjct: 141 -RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKH 184

>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp Length = 190

Iteration: 1
 Score = 93.2 bits (230), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 59/163 (36%), Positives = 93/163 (57%), Gaps = 3/163 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V  DG+T  L I DTAGQE
Sbjct: 22  YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 80
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
            +  +   Y R   G + V+ + + +SF ++  +  +I R   S++V  +LVGNKCDL  
Sbjct: 81  EYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDL-P 139
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIK 170
            + V  + A   A   GIPF+ETSAK+   VE AF  +   I+
Sbjct: 140 TRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIR 182

>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound To Gdp-Mg2+ Length = 218

Iteration: 1
 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 87/179 (48%), Gaps = 1/179 (0%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIG-VDFKIRTVEQDGKTIKLQIWDTAGQ 67
           +K+ LIGD GVGK+  + R  D  + ++Y +T+G V+  +  ++  G  IK  +WDTAGQ
Sbjct: 12  YKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQ 71
Query: 68  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTA 127
           E+   +   YY GA G I+ +DVT + +  N+ +W+ E           ++  NK D+  
Sbjct: 72  EKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKN 131
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPT 186
            + +S +            + E SAK+A N    F+ +A     R      SN    PT
Sbjct: 132 RQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRPDLIFVSNVNLEPT 190

>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Length = 190

Iteration: 1
 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 57/182 (31%), Positives = 96/182 (52%), Gaps = 17/182 (9%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           KL+++GD   GK+CLL+  + D + E Y+ T+  ++ +  +E DGK ++L +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTAN 128
           +  +    Y     I++ + +   +S  N+ ++W  E+  +   NV  +LVGNK DL  +
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRND 124
Query: 129 KVVSYETAKA------------FADEIG-IPFMETSAKSATNVEQAF-MAMAASIKNRMA 174
           +    E AK              A+ IG   +ME SAK+   V + F MA  A+++ R  
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQARRG 184
Query: 175 SQ 176
            +
Sbjct: 185 KK 186

>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And Inorganic Phosphate Length = 172

Iteration: 1
 Score = 92.0 bits (227), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 86/169 (50%), Gaps = 3/169 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +++ + G  GVGKS L+LRF   ++ ESYI T+   ++ + +  D     LQI DT G  
Sbjct: 4   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSH 62
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYAS--ENVNKLLVGNKCDLT 126
           +F  +        H  I+VY +T ++S   +K    +I       E++  +LVGNKCD +
Sbjct: 63  QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 122
Query: 127 ANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMAS 175
            ++ V    A+A A      FMETSAK   NV++ F  +    K R  S
Sbjct: 123 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKRRTVS 171

>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 193

Iteration: 1
 Score = 92.0 bits (227), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 57/182 (31%), Positives = 96/182 (52%), Gaps = 17/182 (9%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           KL+++GD   GK+CLL+  + D + E Y+ T+  ++ +  +E DGK ++L +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTAN 128
           +  +    Y     I++ + +   +S  N+ ++W  E+  +   NV  +LVGNK DL  +
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRND 124
Query: 129 KVVSYETAKA------------FADEIG-IPFMETSAKSATNVEQAF-MAMAASIKNRMA 174
           +    E AK              A+ IG   +ME SAK+   V + F MA  A+++ R  
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQARRG 184
Query: 175 SQ 176
            +
Sbjct: 185 KK 186

>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9: The First Ras Superfamily Gtpase From The Plant Kingdom Length = 212

Iteration: 1
 Score = 91.7 bits (226), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 62/203 (30%), Positives = 104/203 (51%), Gaps = 22/203 (10%)
Query: 8   LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
             K + +GD  VGK+C+L+ +  + +   YI T+  +F    V  DG+ + L +WDTAGQ
Sbjct: 9   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGQIVNLGLWDTAGQ 67
Query: 68  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLT 126
           E +  +    YRGA   ++ + +  + S+ NV K+W+ E+ R+A  NV  +LVG K DL 
Sbjct: 68  EDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLR 126
Query: 127 ANK--------VVSYETAKAFADEIG-IPFMETSAKSATNVEQAFMAMAASIKNRMASQP 177
            +K        V++    +    +IG   ++E S+K+  NV+  F     +IK  +  QP
Sbjct: 127 DDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVF---DTAIK--VVLQP 181
Query: 178 ASNNARPPTVQIRGQPVNQKSGC 200
                 P     R +  +++SGC
Sbjct: 182 PRRKEVP-----RRRKNHRRSGC 199

>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex Length = 201

Iteration: 1
 Score = 91.7 bits (226), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 92/176 (52%), Gaps = 17/176 (9%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           KL+++GD   GK+CLL+ F+ D + E Y+ T+  ++ I  +E DGK ++L +WDTAGQE 
Sbjct: 27  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-IADIEVDGKQVELALWDTAGQED 85
Query: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTAN 128
           +  +    Y     I++ + +   +S  N+ ++W  E+  +   NV  +LVGNK DL  +
Sbjct: 86  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRQD 144
Query: 129 KVVSYETAKAFADEI-------------GIPFMETSAKSATNVEQAF-MAMAASIK 170
           +    E AK   + +                ++E SAK+   V + F MA  A ++
Sbjct: 145 EHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ 200

>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex Length = 201

Iteration: 1
 Score = 91.3 bits (225), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 92/176 (52%), Gaps = 17/176 (9%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           KL+++GD   GK+CLL+ F+ D + E Y+ T+  ++ I  +E DGK ++L +WDTAGQE 
Sbjct: 27  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-IADIEVDGKQVELALWDTAGQED 85
Query: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTAN 128
           +  +    Y     I++ + +   +S  N+ ++W  E+  +   NV  +LVGNK DL  +
Sbjct: 86  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFXP-NVPIILVGNKKDLRQD 144
Query: 129 KVVSYETAKAFADEI-------------GIPFMETSAKSATNVEQAF-MAMAASIK 170
           +    E AK   + +                ++E SAK+   V + F MA  A ++
Sbjct: 145 EHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ 200

>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 90.9 bits (224), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 58/165 (35%), Positives = 94/165 (56%), Gaps = 3/165 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V  DG+T  L I DTAGQE
Sbjct: 5   YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
            +  +   Y R   G + V+ + + +SF ++  +  +I R   SE+V  +LVGNK DL  
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDL-P 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
           ++ V  + A+  A   GIPF+ETSAK+   V+ AF  +   I+  
Sbjct: 123 SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKH 167

>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 90.9 bits (224), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 58/165 (35%), Positives = 94/165 (56%), Gaps = 3/165 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V  DG+T  L I DTAGQE
Sbjct: 5   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
            +  +   Y R   G + V+ + + +SF ++  +  +I R   SE+V  +LVGNK DL  
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDL-P 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
           ++ V  + A+  A   GIPF+ETSAK+   V+ AF  +   I+  
Sbjct: 123 SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKH 167

>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With Gdp Length = 180

Iteration: 1
 Score = 90.5 bits (223), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 56/176 (31%), Positives = 94/176 (53%), Gaps = 17/176 (9%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           KL+++GD   GK+CLL+ F+ D +   Y+ T+  ++ +  +E DGK ++L +WDTAGQE 
Sbjct: 7   KLVIVGDVACGKTCLLIVFSKDQFPAVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTAN 128
           +       Y     I++ + +   +S  N+ ++W  E+  +   NV  +LVGNK DL  +
Sbjct: 66  YDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRND 124
Query: 129 KVVSYETAKA------------FADEIG-IPFMETSAKSATNVEQAF-MAMAASIK 170
           +  + E AK              A+ IG   +ME SAK+   V + F MA  A+++
Sbjct: 125 EHTARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 180

>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant Length = 167

Iteration: 1
 Score = 90.5 bits (223), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 59/164 (35%), Positives = 94/164 (57%), Gaps = 3/164 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V  DG+T  L I DTA QE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAAQE 62
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
            +  +   Y R   G + V+ + + +SF ++ Q+  +I R   S++V  +LVGNK DL A
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDLAA 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKN 171
             V S + A+  A   GIP++ETSAK+   VE AF  +   I+ 
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 180

Iteration: 1
 Score = 90.5 bits (223), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 56/176 (31%), Positives = 94/176 (53%), Gaps = 17/176 (9%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           KL+++GD   GK+CLL+  + D + E Y+ T+  ++ +  +E DGK ++L +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTAN 128
           +  +    Y     I++ + +   +S  N+ ++W  E+  +   NV  +LVGNK DL  +
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRND 124
Query: 129 KVVSYETAKA------------FADEIG-IPFMETSAKSATNVEQAF-MAMAASIK 170
           +    E AK              A+ IG   +ME SAK+   V + F MA  A+++
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 180

>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a Mutant Length = 166

Iteration: 1
 Score = 90.5 bits (223), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 59/165 (35%), Positives = 94/165 (56%), Gaps = 3/165 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V  DG+T  L I DTA QE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAAQE 62
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
            +  +   Y R   G + V+ + + +SF ++ Q+  +I R   S++V  +LVGNK DL A
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDLAA 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
             V S + A+  A   GIP++ETSAK+   VE AF  +   I+  
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH Fragment Of Pdzrhogef Length = 178

Iteration: 1
 Score = 90.5 bits (223), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 56/176 (31%), Positives = 94/176 (53%), Gaps = 17/176 (9%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           KL+++GD   GK+CLL+  + D + E Y+ T+  ++ +  +E DGK ++L +WDTAGQE 
Sbjct: 5   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 63
Query: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTAN 128
           +  +    Y     I++ + +   +S  N+ ++W  E+  +   NV  +LVGNK DL  +
Sbjct: 64  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRND 122
Query: 129 KVVSYETAKA------------FADEIG-IPFMETSAKSATNVEQAF-MAMAASIK 170
           +    E AK              A+ IG   +ME SAK+   V + F MA  A+++
Sbjct: 123 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 178

>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177

Iteration: 1
 Score = 90.1 bits (222), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 56/175 (32%), Positives = 93/175 (53%), Gaps = 17/175 (9%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           KL+++GD   GK+CLL+  + D + E Y+ T+  ++ +  +E DGK ++L +WDTAGQE 
Sbjct: 5   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 63
Query: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTAN 128
           +  +    Y     I++ + +   +S  N+ ++W  E+  +   NV  +LVGNK DL  +
Sbjct: 64  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRND 122
Query: 129 KVVSYETAKA------------FADEIG-IPFMETSAKSATNVEQAF-MAMAASI 169
           +    E AK              A+ IG   +ME SAK+   V + F MA  A++
Sbjct: 123 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL 177

>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8 Length = 180

Iteration: 1
 Score = 89.7 bits (221), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 88/169 (52%), Gaps = 14/169 (8%)
Query: 8   LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
             K + +GD  VGK+C+L+ +  +++   Y+ T+  +F    V  DG T+ L +WDTAGQ
Sbjct: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGNTVNLGLWDTAGQ 64
Query: 68  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLT 126
           E +  +    YRGA   I+ + +  + S+ NV K+W+ E+  YA   V  +LVG K DL 
Sbjct: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLR 123
Query: 127 ANK----------VVSYETAKAFADEIGIP-FMETSAKSATNVEQAFMA 164
            +K           ++    +     IG P ++E S+K+  NV+  F A
Sbjct: 124 DDKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVFDA 172

>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras P21 In Complex With Gppnhp Length = 166

Iteration: 1
 Score = 89.4 bits (220), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 59/165 (35%), Positives = 94/165 (56%), Gaps = 3/165 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++   + +++    TI   ++ + V  DG+T  L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
            +  +   Y R   G + V+ + + +SF ++ Q+  +I R   S++V  +LVGNK DL A
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
             V S + A+  A   GIP++ETSAK+   VE AF  +   I+  
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5 Length = 182

Iteration: 1
 Score = 89.4 bits (220), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 92/182 (50%), Gaps = 19/182 (10%)
Query: 8   LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
             K + +GD  VGK+CLL+ +  +++   Y+ T+  +F    V  +G T+ L +WDTAGQ
Sbjct: 8   FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGATVNLGLWDTAGQ 66
Query: 68  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLT 126
           E +  +    YRGA   I+ + +  + S+ NV K+W+ E+  YA   V  +LVG K DL 
Sbjct: 67  EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIVLVGTKLDLR 125
Query: 127 ANK----------VVSYETAKAFADEIGIP-FMETSAKSATNVEQAFMAMAASIKNRMAS 175
            +K           ++    +     IG P ++E S+KS  NV+  F A       R+  
Sbjct: 126 DDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAI-----RVVL 180
Query: 176 QP 177
           QP
Sbjct: 181 QP 182

>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc- Gmppnp Length = 193

Iteration: 1
 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 54/178 (30%), Positives = 92/178 (51%), Gaps = 17/178 (9%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           KL+++GD   GK+CLL+  + D + E Y+ T+  ++ I  +E DGK ++L +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-IADIEVDGKQVELALWDTAGQED 65
Query: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTAN 128
           +  +    Y     I++ + +   +S  N+ ++W  E+  +   NV  +LVGNK DL  +
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRQD 124
Query: 129 KVVSYETAKAFADEI-------------GIPFMETSAKSATNVEQAF-MAMAASIKNR 172
           +    E AK   + +                ++E SAK+   V + F MA  A ++ R
Sbjct: 125 EHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQVR 182

>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras, In The Gdp- Bound State Length = 181

Iteration: 1
 Score = 88.2 bits (217), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 81/153 (52%), Gaps = 4/153 (2%)
Query: 21  KSCLLLRFADDSYLESYISTIGVDF-KIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYR 79
           KS L ++F    ++  Y  TI   + KI +V  DG   +L I DTAGQE F  +   Y R
Sbjct: 22  KSALTIQFIQSYFVSDYDPTIEDSYTKICSV--DGIPARLDILDTAGQEEFGAMREQYMR 79
Query: 80  GAHGIIVVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTANKVVSYETAKA 138
             HG ++V+ + D++SFN V +   +I R    ++   +LVGNK DL + + V    A A
Sbjct: 80  AGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASA 139
Query: 139 FADEIGIPFMETSAKSATNVEQAFMAMAASIKN 171
           F     + + E SAK   NV++AF  +  +++ 
Sbjct: 140 FGASHHVAYFEASAKLRLNVDEAFEQLVRAVRK 172

>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa Mutant (Q63l) Length = 184

Iteration: 1
 Score = 87.4 bits (215), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 55/176 (31%), Positives = 93/176 (52%), Gaps = 17/176 (9%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           KL+++GD   GK+CLL+  + D + E Y+ T+  ++ +  +E DGK ++L +WDTAG E 
Sbjct: 10  KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLED 68
Query: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTAN 128
           +  +    Y     I++ + +   +S  N+ ++W  E+  +   NV  +LVGNK DL  +
Sbjct: 69  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRND 127
Query: 129 KVVSYETAKA------------FADEIG-IPFMETSAKSATNVEQAF-MAMAASIK 170
           +    E AK              A+ IG   +ME SAK+   V + F MA  A+++
Sbjct: 128 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 183

>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State Length = 196

Iteration: 1
 Score = 87.4 bits (215), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 59/172 (34%), Positives = 92/172 (53%), Gaps = 10/172 (5%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           KL + G +GVGKS L++RF    ++  Y  T+   ++ +    D + + ++I DTAGQE 
Sbjct: 30  KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQAT-IDDEVVSMEILDTAGQED 88
Query: 70  FRTIT-SSYYRGAHGIIVVYDVTDQESFNNV---KQWLNEIDRYASENVNKLLVGNKCDL 125
             TI    + R   G ++VYD+TD+ SF  V   K  L+EI +   +NV  +LVGNK DL
Sbjct: 89  --TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKK--PKNVTLILVGNKADL 144
Query: 126 TANKVVSYETAKAFADEIGIPFMETSAKSAT-NVEQAFMAMAASIKNRMASQ 176
             ++ VS E  +  A E+   F E SA +   N+ + F  +   ++ R   Q
Sbjct: 145 DHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRRRMVQ 196

>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex Length = 180

Iteration: 1
 Score = 87.0 bits (214), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 88/167 (52%), Gaps = 14/167 (8%)
Query: 8   LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
             K + +GD  VGK+C+L+ +  +++   Y+ T+  +F    V  DG T+ L +WDTAGQ
Sbjct: 6   FIKCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
Query: 68  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLT 126
           E +  +    YRGA   ++ + +  + S+ N+ K+WL E+  YA   +  +LVG K DL 
Sbjct: 65  EDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYA-PGIPIVLVGTKLDLR 123
Query: 127 ANK--------VVSYETAKA--FADEIG-IPFMETSAKSATNVEQAF 162
            +K          S  TA+       IG + ++E S+K+  NV+  F
Sbjct: 124 DDKQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVF 170

>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex Length = 194

Iteration: 1
 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 86/169 (50%), Gaps = 16/169 (9%)
Query: 8   LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
           + K +++GD  VGK+CLL+ +A+D++ E Y+ T+  D    +V   GK   L ++DTAGQ
Sbjct: 18  MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTAGQ 76
Query: 68  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDL- 125
           E +  +    Y      ++ + V +  SF NVK +W+ E+  YA  NV  LL+G + DL 
Sbjct: 77  EDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP-NVPFLLIGTQIDLR 135
Query: 126 -----------TANKVVSYETAKAFADEIG-IPFMETSAKSATNVEQAF 162
                         K +  E  +  A EIG   ++E SA +   ++  F
Sbjct: 136 DDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVF 184

>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp Length = 177

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 54/146 (36%), Positives = 83/146 (56%), Gaps = 4/146 (2%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDF-KIRTVEQDGKTIKLQIWDTAGQE 68
           K+ ++G   VGKS L ++F +  +++SY  TI   F K+ TV  +G+   LQ+ DTAGQ+
Sbjct: 8   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITV--NGQEYHLQLVDTAGQD 65
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEI-DRYASENVNKLLVGNKCDLTA 127
            +     +Y    +G I+VY VT  +SF  +K    ++ D      +  +LVGNK DL  
Sbjct: 66  EYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM 125
Query: 128 NKVVSYETAKAFADEIGIPFMETSAK 153
            +V+SYE  KA A+     F+E+SAK
Sbjct: 126 ERVISYEEGKALAESWNAAFLESSAK 151

>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex With Pde6d Length = 181

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 54/146 (36%), Positives = 83/146 (56%), Gaps = 4/146 (2%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDF-KIRTVEQDGKTIKLQIWDTAGQE 68
           K+ ++G   VGKS L ++F +  +++SY  TI   F K+ TV  +G+   LQ+ DTAGQ+
Sbjct: 8   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITV--NGQEYHLQLVDTAGQD 65
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEI-DRYASENVNKLLVGNKCDLTA 127
            +     +Y    +G I+VY VT  +SF  +K    ++ D      +  +LVGNK DL  
Sbjct: 66  EYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM 125
Query: 128 NKVVSYETAKAFADEIGIPFMETSAK 153
            +V+SYE  KA A+     F+E+SAK
Sbjct: 126 ERVISYEEGKALAESWNAAFLESSAK 151

>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp Length = 169

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 54/146 (36%), Positives = 83/146 (56%), Gaps = 4/146 (2%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDF-KIRTVEQDGKTIKLQIWDTAGQE 68
           K+ ++G   VGKS L ++F +  +++SY  TI   F K+ TV  +G+   LQ+ DTAGQ+
Sbjct: 3   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITV--NGQEYHLQLVDTAGQD 60
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEI-DRYASENVNKLLVGNKCDLTA 127
            +     +Y    +G I+VY VT  +SF  +K    ++ D      +  +LVGNK DL  
Sbjct: 61  EYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM 120
Query: 128 NKVVSYETAKAFADEIGIPFMETSAK 153
            +V+SYE  KA A+     F+E+SAK
Sbjct: 121 ERVISYEEGKALAESWNAAFLESSAK 146

>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2 (Rras2) In The Gdp Bound State Length = 172

Iteration: 1
 Score = 84.0 bits (206), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 49/152 (32%), Positives = 79/152 (51%), Gaps = 2/152 (1%)
Query: 21  KSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRG 80
           KS L ++F    ++  Y  TI   +  + V  D +  +L I DTAGQE F  +   Y R 
Sbjct: 18  KSALTIQFIQSYFVTDYDPTIEDSYTKQCV-IDDRAARLDILDTAGQEEFGAMREQYMRT 76
Query: 81  AHGIIVVYDVTDQESFNNVKQWLNEIDRYASEN-VNKLLVGNKCDLTANKVVSYETAKAF 139
             G ++V+ VTD+ SF  + ++  +I R    +    +L+GNK DL   + V+ E  +  
Sbjct: 77  GEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQL 136
Query: 140 ADEIGIPFMETSAKSATNVEQAFMAMAASIKN 171
           A ++ + +ME SAK   NV+QAF  +   I+ 
Sbjct: 137 ARQLKVTYMEASAKIRMNVDQAFHELVRVIRK 168

>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With Arfaptin (P21) Length = 192

Iteration: 1
 Score = 83.6 bits (205), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 90/189 (47%), Gaps = 19/189 (10%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K +++GD  VGK+CLL+ +  +++   YI T+  ++    V  DGK + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTA 127
            +  +    Y      ++ + +    SF NV+ +W  E+ R+   N   +LVG K DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 121
Query: 128 NK------------VVSYETAKAFADEIG-IPFMETSAKSATNVEQAFMAMAASIKNRMA 174
           +K             ++Y    A A EIG + ++E SA +   ++  F     +I+  + 
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF---DEAIRAVLC 178
Query: 175 SQPASNNAR 183
             P     R
Sbjct: 179 PPPVKKRKR 187

>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp Length = 183

Iteration: 1
 Score = 83.6 bits (205), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 59/166 (35%), Positives = 92/166 (55%), Gaps = 3/166 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++GD GVGKS L ++F    +++ Y  TI  D  ++  E D +   L + DTAGQE
Sbjct: 19  YKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIE-DSYLKHTEIDNQWAILDVLDTAGQE 77
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTA 127
            F  +   Y R   G ++VY VTD+ SF +V ++   I R    E+   +LV NK DL  
Sbjct: 78  EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 137
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSAT-NVEQAFMAMAASIKNR 172
            + V+ +  K  A +  IP++ETSAK    NV++ F  +   I+ +
Sbjct: 138 LRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQ 183

>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP Length = 183

Iteration: 1
 Score = 83.2 bits (204), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 59/166 (35%), Positives = 92/166 (55%), Gaps = 3/166 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++GD GVGKS L ++F    +++ Y  TI   ++  T E D +   L + DTAGQE
Sbjct: 19  YKLVVVGDGGVGKSALTIQFFQKIFVDEYDPTIEDSYRKHT-EIDNQWAILDVLDTAGQE 77
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTA 127
            F  +   Y R   G ++VY VTD+ SF +V ++   I R    E+   +LV NK DL  
Sbjct: 78  EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 137
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSAT-NVEQAFMAMAASIKNR 172
            + V+ +  K  A +  IP++ETSAK    NV++ F  +   I+ +
Sbjct: 138 LRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQ 183

>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The Vav1 Exchange Factor Length = 184

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 84/168 (50%), Gaps = 16/168 (9%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K +++GD  VGK+CLL+ +  +++   YI T+  ++    V  DGK + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTA 127
            +  +    Y      ++ + +    SF NV+ +W  E+ R+   N   +LVG K DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 121
Query: 128 NK------------VVSYETAKAFADEIG-IPFMETSAKSATNVEQAF 162
           +K             ++Y    A A EIG + ++E SA +   ++  F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp (Type 1) Length = 183

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/166 (35%), Positives = 91/166 (54%), Gaps = 3/166 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++GD GVGKS L ++F    ++  Y  TI  D  ++  E D +   L + DTAGQE
Sbjct: 19  YKLVVVGDGGVGKSALTIQFFQKIFVPEYDPTIE-DSYLKHTEIDNQWAILDVLDTAGQE 77
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTA 127
            F  +   Y R   G ++VY VTD+ SF +V ++   I R    E+   +LV NK DL  
Sbjct: 78  EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 137
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSAT-NVEQAFMAMAASIKNR 172
            + V+ +  K  A +  IP++ETSAK    NV++ F  +   I+ +
Sbjct: 138 LRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQ 183

>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation Length = 192

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 90/189 (47%), Gaps = 19/189 (10%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K +++GD  VGK+CLL+ +  +++   YI T+  ++    V  DGK + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 62
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTA 127
            +  +    Y      ++ + +    SF NV+ +W  E+ R+   N   +LVG K DL  
Sbjct: 63  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 121
Query: 128 NK------------VVSYETAKAFADEIG-IPFMETSAKSATNVEQAFMAMAASIKNRMA 174
           +K             ++Y    A A EIG + ++E SA +   ++  F     +I+  + 
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF---DEAIRAVLC 178
Query: 175 SQPASNNAR 183
             P     R
Sbjct: 179 PPPVKKRKR 187

>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp Length = 178

Iteration: 1
 Score = 82.4 bits (202), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/166 (35%), Positives = 91/166 (54%), Gaps = 3/166 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++GD GVGKS L ++F    ++  Y  TI  D  ++  E D +   L + DTAGQE
Sbjct: 14  YKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIE-DSYLKHTEIDNQWAILDVLDTAGQE 72
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTA 127
            F  +   Y R   G ++VY VTD+ SF +V ++   I R    E+   +LV NK DL  
Sbjct: 73  EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 132
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSAT-NVEQAFMAMAASIKNR 172
            + V+ +  K  A +  IP++ETSAK    NV++ F  +   I+ +
Sbjct: 133 LRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQ 178

>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac Length = 176

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 84/168 (50%), Gaps = 16/168 (9%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K +++GD  VGK+CLL+ +  +++   YI T+  ++    V  DGK + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTA 127
            +  +    Y      ++ + +    SF NV+ +W  E+ R+   N   +LVG K DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 121
Query: 128 NK------------VVSYETAKAFADEIG-IPFMETSAKSATNVEQAF 162
           +K             ++Y    A A EIG + ++E SA +   ++  F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine Nucleotide Exchange Region Of Tiam1 Length = 177

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 84/168 (50%), Gaps = 16/168 (9%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K +++GD  VGK+CLL+ +  +++   YI T+  ++    V  DGK + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTA 127
            +  +    Y      ++ + +    SF NV+ +W  E+ R+   N   +LVG K DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 121
Query: 128 NK------------VVSYETAKAFADEIG-IPFMETSAKSATNVEQAF 162
           +K             ++Y    A A EIG + ++E SA +   ++  F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta 2 Length = 178

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 84/168 (50%), Gaps = 16/168 (9%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K +++GD  VGK+CLL+ +  +++   YI T+  ++    V  DGK + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTA 127
            +  +    Y      ++ + +    SF NV+ +W  E+ R+   N   +LVG K DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 121
Query: 128 NK------------VVSYETAKAFADEIG-IPFMETSAKSATNVEQAF 162
           +K             ++Y    A A EIG + ++E SA +   ++  F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|1MH1|A Chain A, Small G-Protein Length = 186

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 84/168 (50%), Gaps = 16/168 (9%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K +++GD  VGK+CLL+ +  +++   YI T+  ++    V  DGK + L +WDTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 64
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTA 127
            +  +    Y      ++ + +    SF NV+ +W  E+ R+   N   +LVG K DL  
Sbjct: 65  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 123
Query: 128 NK------------VVSYETAKAFADEIG-IPFMETSAKSATNVEQAF 162
           +K             ++Y    A A EIG + ++E SA +   ++  F
Sbjct: 124 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 171

>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1 Length = 204

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K +++GD  VGK+CLL+ +  +++   YI T+  D     V  DGK + L +WDTAGQE
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 89
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTA 127
            +  +    Y      ++ + +    SF NV+ +W  E+ R+   N   +LVG K DL  
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 148
Query: 128 NK------------VVSYETAKAFADEIG-IPFMETSAKSATNVEQAF 162
           +K             ++Y    A A EIG + ++E SA +   ++  F
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196

>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1 In Complex With Rac1 Length = 184

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 84/168 (50%), Gaps = 16/168 (9%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K +++GD  VGK+CLL+ +  +++   YI T+  ++    V  DGK + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTA 127
            +  +    Y      ++ + +    SF NV+ +W  E+ R+   N   +LVG K DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 121
Query: 128 NK------------VVSYETAKAFADEIG-IPFMETSAKSATNVEQAF 162
           +K             ++Y    A A EIG + ++E SA +   ++  F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From Saccharomyces Cerevisiae Length = 188

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 91/169 (53%), Gaps = 16/169 (9%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           KL+++GD   GK+CLL+  +   + E Y+ T+  ++ +  VE DG+ ++L +WDTAGQE 
Sbjct: 12  KLVIVGDGACGKTCLLIVNSKGQFPEVYVPTVFENY-VADVEVDGRRVELALWDTAGQED 70
Query: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDL--- 125
           +  +    Y  ++ +++ + +   +S  NV++ W+ E+  +  + V  +LVG K DL   
Sbjct: 71  YDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHFC-QGVPIILVGCKVDLRND 129
Query: 126 ---------TANKVVSYETAKAFADEIGIP-FMETSAKSATNVEQAFMA 164
                       + V+ +  ++ AD+IG   + E SAK+   V + F A
Sbjct: 130 PQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVFEA 178

>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase And Gtpase Activating Protein Sptp Bound To Rac1 Length = 184

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 84/168 (50%), Gaps = 16/168 (9%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K +++GD  VGK+CLL+ +  +++   YI T+  ++    V  DGK + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTA 127
            +  +    Y      ++ + +    SF NV+ +W  E+ R+   N   +LVG K DL  
Sbjct: 63  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 121
Query: 128 NK------------VVSYETAKAFADEIG-IPFMETSAKSATNVEQAF 162
           +K             ++Y    A A EIG + ++E SA +   ++  F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1 Length = 188

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 84/168 (50%), Gaps = 16/168 (9%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K +++GD  VGK+CLL+ +  +++   YI T+  ++    V  DGK + L +WDTAGQE
Sbjct: 8   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 66
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTA 127
            +  +    Y      ++ + +    SF NV+ +W  E+ R+   N   +LVG K DL  
Sbjct: 67  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 125
Query: 128 NK------------VVSYETAKAFADEIG-IPFMETSAKSATNVEQAF 162
           +K             ++Y    A A EIG + ++E SA +   ++  F
Sbjct: 126 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 173

>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1. Length = 196

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 84/168 (50%), Gaps = 16/168 (9%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K +++GD  VGK+CLL+ +  +++   YI T+  ++    V  DGK + L +WDTAGQE
Sbjct: 23  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 81
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTA 127
            +  +    Y      ++ + +    SF NV+ +W  E+ R+   N   +LVG K DL  
Sbjct: 82  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 140
Query: 128 NK------------VVSYETAKAFADEIG-IPFMETSAKSATNVEQAF 162
           +K             ++Y    A A EIG + ++E SA +   ++  F
Sbjct: 141 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 188

>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex With Rac1 (T17n Mutant) Length = 184

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K +++GD  VGK+CLL+ +  +++   YI T+  D     V  DGK + L +WDTAGQE
Sbjct: 11  IKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 69
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTA 127
            +  +    Y      ++ + +    SF NV+ +W  E+ R+   N   +LVG K DL  
Sbjct: 70  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 128
Query: 128 NK------------VVSYETAKAFADEIG-IPFMETSAKSATNVEQAF 162
           +K             ++Y    A A EIG + ++E SA +   ++  F
Sbjct: 129 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 176

>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound Forms Length = 167

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 53/146 (36%), Positives = 82/146 (56%), Gaps = 4/146 (2%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDF-KIRTVEQDGKTIKLQIWDTAGQE 68
           K+ ++G   VGKS L ++F +  +++S   TI   F K+ TV  +G+   LQ+ DTAGQ+
Sbjct: 6   KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTFTKLITV--NGQEYHLQLVDTAGQD 63
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEI-DRYASENVNKLLVGNKCDLTA 127
            +     +Y    +G I+VY VT  +SF  +K    ++ D      +  +LVGNK DL  
Sbjct: 64  EYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM 123
Query: 128 NKVVSYETAKAFADEIGIPFMETSAK 153
            +V+SYE  KA A+     F+E+SAK
Sbjct: 124 ERVISYEEGKALAESWNAAFLESSAK 149

>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of Gpp(Nh)p. Length = 180

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 84/168 (50%), Gaps = 16/168 (9%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K +++GD  VGK+CLL+ +  +++   YI T+  ++    V  DGK + L +WDTAGQE
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 63
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTA 127
            +  +    Y      ++ + +    SF NV+ +W  E+ R+   +   LLVG K DL  
Sbjct: 64  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPHTPILLVGTKLDLRD 122
Query: 128 NK------------VVSYETAKAFADEIG-IPFMETSAKSATNVEQAF 162
           +K             ++Y    A A EIG + ++E SA +   ++  F
Sbjct: 123 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVF 170

>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With Gdp And Chloride Length = 179

Iteration: 1
 Score = 81.3 bits (199), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 84/168 (50%), Gaps = 16/168 (9%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K +++GD  VGK+CLL+ +  +++   YI T+  ++    V  DGK + L +WDTAGQE
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 63
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTA 127
            +  +    Y      ++ + +    SF NV+ +W  E+ R+   +   LLVG K DL  
Sbjct: 64  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPHTPILLVGTKLDLRD 122
Query: 128 NK------------VVSYETAKAFADEIG-IPFMETSAKSATNVEQAF 162
           +K             ++Y    A A EIG + ++E SA +   ++  F
Sbjct: 123 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVF 170

>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant Length = 187

Iteration: 1
 Score = 81.3 bits (199), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 84/168 (50%), Gaps = 16/168 (9%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K +++GD  VGK+CLL+ +  +++   YI T+  ++    V  DGK + L +WDTAGQE
Sbjct: 14  IKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 72
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTA 127
            +  +    Y      ++ + +    SF NV+ +W  E+ R+   N   +LVG K DL  
Sbjct: 73  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 131
Query: 128 NK------------VVSYETAKAFADEIG-IPFMETSAKSATNVEQAF 162
           +K             ++Y    A A EIG + ++E SA +   ++  F
Sbjct: 132 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 179

>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp Length = 192

Iteration: 1
 Score = 81.3 bits (199), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 84/168 (50%), Gaps = 16/168 (9%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K +++GD  VGK+CLL+ +  +++   YI T+  ++    V  DGK + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTA 127
            +  +    Y      ++ + +    SF NV+ +W  E+ R+   +   LLVG K DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPHTPILLVGTKLDLRD 121
Query: 128 NK------------VVSYETAKAFADEIG-IPFMETSAKSATNVEQAF 162
           +K             ++Y    A A EIG + ++E SA +   ++  F
Sbjct: 122 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVF 169

>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX Length = 192

Iteration: 1
 Score = 80.9 bits (198), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 89/189 (47%), Gaps = 19/189 (10%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K +++GD  VGK+CLL+ +  +++   YI T+  ++    V  DGK + L +WDTAG E
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGLE 62
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTA 127
            +  +    Y      ++ + +    SF NV+ +W  E+ R+   N   +LVG K DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 121
Query: 128 NK------------VVSYETAKAFADEIG-IPFMETSAKSATNVEQAFMAMAASIKNRMA 174
           +K             ++Y    A A EIG + ++E SA +   ++  F     +I+  + 
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF---DEAIRAVLC 178
Query: 175 SQPASNNAR 183
             P     R
Sbjct: 179 PPPVKKRKR 187

>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With Arfaptin Length = 192

Iteration: 1
 Score = 80.9 bits (198), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 89/189 (47%), Gaps = 19/189 (10%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K +++GD  VGK+CLL+ +  +++   YI T+  ++    V  DGK + L +WDTAG E
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGLE 62
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTA 127
            +  +    Y      ++ + +    SF NV+ +W  E+ R+   N   +LVG K DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 121
Query: 128 NK------------VVSYETAKAFADEIG-IPFMETSAKSATNVEQAFMAMAASIKNRMA 174
           +K             ++Y    A A EIG + ++E SA +   ++  F     +I+  + 
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF---DEAIRAVLC 178
Query: 175 SQPASNNAR 183
             P     R
Sbjct: 179 PPPVKKRKR 187

>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant Length = 204

Iteration: 1
 Score = 80.5 bits (197), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 82/168 (48%), Gaps = 16/168 (9%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K +++GD  VGK+CLL+ +  ++    YI T+  D     V  DGK + L +WDTAGQE
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNALPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 89
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTA 127
            +  +    Y      ++ + +    SF NV+ +W  E+ R+   N   +LVG K DL  
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 148
Query: 128 NK------------VVSYETAKAFADEIG-IPFMETSAKSATNVEQAF 162
           +K             ++Y    A A EIG + ++E SA +   ++  F
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196

>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1 Length = 180

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K +++GD  VGK+CLL+ +  +++   YI T+  ++    V  DGK + L +WDTAG E
Sbjct: 7   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGLE 65
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTA 127
            +  +    Y      ++ + +    SF NV+ +W  E+ R+   N   +LVG K DL  
Sbjct: 66  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 124
Query: 128 NK------------VVSYETAKAFADEIG-IPFMETSAKSATNVEQAF 162
           +K             ++Y    A A EIG + ++E SA +   ++  F
Sbjct: 125 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 172

>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant Length = 204

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K +++GD  VGK+CLL+ +  +++   YI T+  ++    V  DGK + L +WDTAG E
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGLE 89
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTA 127
            +  +    Y      ++ + +    SF NV+ +W  E+ R+   N   +LVG K DL  
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 148
Query: 128 NK------------VVSYETAKAFADEIG-IPFMETSAKSATNVEQAF 162
           +K             ++Y    A A EIG + ++E SA +   ++  F
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196

>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2 Wildtype Length = 332

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 85/169 (50%), Gaps = 16/169 (9%)
Query: 8   LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
           L K +++GD  VGK+CLL+ +  +++   YI T+  ++    V  DGK + L +WDTAG 
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGL 213
Query: 68  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLT 126
           E +  +    Y      ++ + +    SF++V+ +W  E+ R+   N   +LVG K DL 
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEV-RHHCPNTPIILVGTKLDLR 272
Query: 127 ANK------------VVSYETAKAFADEIG-IPFMETSAKSATNVEQAF 162
            +K             ++Y    A A EIG + ++E SA +   ++  F
Sbjct: 273 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321

>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450a Mutant Length = 332

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 85/169 (50%), Gaps = 16/169 (9%)
Query: 8   LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
           L K +++GD  VGK+CLL+ +  +++   YI T+  ++    V  DGK + L +WDTAG 
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGL 213
Query: 68  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLT 126
           E +  +    Y      ++ + +    SF++V+ +W  E+ R+   N   +LVG K DL 
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEV-RHHCPNTPIILVGTKLDLR 272
Query: 127 ANK------------VVSYETAKAFADEIG-IPFMETSAKSATNVEQAF 162
            +K             ++Y    A A EIG + ++E SA +   ++  F
Sbjct: 273 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321

>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450m Mutant Length = 332

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 85/169 (50%), Gaps = 16/169 (9%)
Query: 8   LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
           L K +++GD  VGK+CLL+ +  +++   YI T+  ++    V  DGK + L +WDTAG 
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGL 213
Query: 68  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLT 126
           E +  +    Y      ++ + +    SF++V+ +W  E+ R+   N   +LVG K DL 
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEV-RHHCPNTPIILVGTKLDLR 272
Query: 127 ANK------------VVSYETAKAFADEIG-IPFMETSAKSATNVEQAF 162
            +K             ++Y    A A EIG + ++E SA +   ++  F
Sbjct: 273 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321

>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex Length = 192

Iteration: 1
 Score = 77.8 bits (190), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 89/189 (47%), Gaps = 19/189 (10%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K +++GD  VGK+CLL+ +  +++   YI T+  ++    V  D K + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDSKPVNLGLWDTAGQE 62
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTA 127
            +  +    Y      ++ + +    S+ NV+ +W  E+ R+   +   +LVG K DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEV-RHHCPSTPIILVGTKLDLRD 121
Query: 128 NK------------VVSYETAKAFADEI-GIPFMETSAKSATNVEQAFMAMAASIKNRMA 174
           +K             ++Y    A A EI  + ++E SA +   ++  F     +I+  + 
Sbjct: 122 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVF---DEAIRAVLC 178
Query: 175 SQPASNNAR 183
            QP     R
Sbjct: 179 PQPTRQQKR 187

>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State Length = 201

Iteration: 1
 Score = 77.4 bits (189), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 55/176 (31%), Positives = 87/176 (49%), Gaps = 17/176 (9%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           K +L+GD  VGK+ L++ +  + Y   YI T   +F    V  DG+ ++LQ+ DTAGQ+ 
Sbjct: 22  KCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFS-AVVSVDGRPVRLQLCDTAGQDE 80
Query: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTAN 128
           F  +    Y      ++ + V    SF NV ++W+ EI R        +LVG + DL  +
Sbjct: 81  FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEI-RCHCPKAPIILVGTQSDLRED 139
Query: 129 ------------KVVSYETAKAFADEI-GIPFMETSAKSATNVEQAF-MAMAASIK 170
                       K V  E AK  A+EI    ++E SA +  N+++ F  A+ A I+
Sbjct: 140 VKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVAGIQ 195

>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A Constitutively Activated Small G Protein Length = 205

Iteration: 1
 Score = 77.0 bits (188), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 90/178 (50%), Gaps = 17/178 (9%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           K++++GDS  GK+ LL  FA D + E+Y+ T+  ++   + E D + I+L +WDT+G   
Sbjct: 30  KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPY 88
Query: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTAN 128
           +  +    Y  +  +++ +D++  E+ ++V K+W  EI  +   N   LLVG K DL  +
Sbjct: 89  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTD 147
Query: 129 ------------KVVSYETAKAFADEIGIP-FMETSA-KSATNVEQAFMAMAASIKNR 172
                         VSY+     A +IG   ++E SA +S  +V   F     +  N+
Sbjct: 148 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVNK 205

>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 200

Iteration: 1
 Score = 77.0 bits (188), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 90/178 (50%), Gaps = 17/178 (9%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           K++++GDS  GK+ LL  FA D + E+Y+ T+  ++   + E D + I+L +WDT+G   
Sbjct: 25  KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPY 83
Query: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTAN 128
           +  +    Y  +  +++ +D++  E+ ++V K+W  EI  +   N   LLVG K DL  +
Sbjct: 84  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTD 142
Query: 129 ------------KVVSYETAKAFADEIGIP-FMETSA-KSATNVEQAFMAMAASIKNR 172
                         VSY+     A +IG   ++E SA +S  +V   F     +  N+
Sbjct: 143 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVNK 200

>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS Length = 184

Iteration: 1
 Score = 76.6 bits (187), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 90/178 (50%), Gaps = 17/178 (9%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           K++++GDS  GK+ LL  FA D + E+Y+ T+  ++   + E D + I+L +WDT+G   
Sbjct: 9   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPY 67
Query: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTAN 128
           +  +    Y  +  +++ +D++  E+ ++V K+W  EI  +   N   LLVG K DL  +
Sbjct: 68  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTD 126
Query: 129 ------------KVVSYETAKAFADEIGIP-FMETSA-KSATNVEQAFMAMAASIKNR 172
                         VSY+     A +IG   ++E SA +S  +V   F     +  N+
Sbjct: 127 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVNK 184

>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1 Length = 201

Iteration: 1
 Score = 76.6 bits (187), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 47/146 (32%), Positives = 77/146 (52%), Gaps = 4/146 (2%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDF-KIRTVEQDGKTIKLQIWDTAGQE 68
           K++++G   VGK+ L  +F +  + E Y  T+   + KI T+ +D     L + DTAGQ+
Sbjct: 26  KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKD--EFHLHLVDTAGQD 83
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDR-YASENVNKLLVGNKCDLTA 127
            +  +  S+  G HG ++VY VT   SF  ++    ++   +    V  +LVGNK DL+ 
Sbjct: 84  EYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSP 143
Query: 128 NKVVSYETAKAFADEIGIPFMETSAK 153
            + V     K  A+  G  FME+SA+
Sbjct: 144 EREVQAVEGKKLAESWGATFMESSAR 169

>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The Inactive Gdp Bound State Length = 199

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/147 (34%), Positives = 77/147 (52%), Gaps = 4/147 (2%)
Query: 21  KSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRG 80
           KS L+LRF   ++ ++YI TI   ++ + +  D     LQI DT G  +F  +       
Sbjct: 21  KSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRLSISK 79
Query: 81  AHGIIVVYDVTDQESFNNVKQWLNEIDRY--ASENVNKLLVGNKCDLTANKVVSYETAKA 138
            H  I+V+ VT ++S   +      I +   + E++  +LVGNKCD T  +V + E A+A
Sbjct: 80  GHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTRE-AQA 138
Query: 139 FADEIGIPFMETSAKSATNVEQAFMAM 165
            A E    FMETSAK   NV++ F  +
Sbjct: 139 VAQEWKCAFMETSAKMNYNVKELFQEL 165

>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A Self-Activating Gtpase Length = 203

Iteration: 1
 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 89/187 (47%), Gaps = 35/187 (18%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K +++GD  VGK+CLL+ +  +++   YI T+  D     V  DGK + L +WDTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 64
Query: 69  RF---------RTITSSY-----YRG-----AHGIIVVYDVTDQESFNNVK-QWLNEIDR 108
            +         +T+  +Y      RG     A   ++ + +    SF NV+ +W  E+ R
Sbjct: 65  DYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEV-R 123
Query: 109 YASENVNKLLVGNKCDLTANK------------VVSYETAKAFADEIG-IPFMETSAKSA 155
           +   N   +LVG K DL  +K             ++Y    A A EIG + ++E SA + 
Sbjct: 124 HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 183
Query: 156 TNVEQAF 162
             ++  F
Sbjct: 184 RGLKTVF 190

>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp Length = 185

Iteration: 1
 Score = 73.9 bits (180), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 82/168 (48%), Gaps = 16/168 (9%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K +++GD  VGK+CLL+ +  +++   YI T+  ++    V  D K + L +WDTAGQE
Sbjct: 10  IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDSKPVNLGLWDTAGQE 68
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTA 127
            +  +    Y      ++ + +    S+ NV+ +W  E+ R+   +   +LVG K DL  
Sbjct: 69  DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEV-RHHCPSTPIILVGTKLDLRD 127
Query: 128 NK------------VVSYETAKAFADEI-GIPFMETSAKSATNVEQAF 162
           +K             ++Y    A A EI  + ++E SA +   ++  F
Sbjct: 128 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVF 175

>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs Length = 184

Iteration: 1
 Score = 73.6 bits (179), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 82/168 (48%), Gaps = 16/168 (9%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K +++GD  VGK+CLL+ +  +++   YI T+  ++    V  D K + L +WDTAGQE
Sbjct: 11  IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDSKPVNLGLWDTAGQE 69
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTA 127
            +  +    Y      ++ + +    S+ NV+ +W  E+ R+   +   +LVG K DL  
Sbjct: 70  DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEV-RHHCPSTPIILVGTKLDLRD 128
Query: 128 NK------------VVSYETAKAFADEI-GIPFMETSAKSATNVEQAF 162
           +K             ++Y    A A EI  + ++E SA +   ++  F
Sbjct: 129 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVF 176

>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex Length = 190

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K +++GD  VGK+CLL+ +  + +   Y+ T+  ++ + TV   G+   L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVXIGGEPYTLGLFDTAGQE 62
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDL-- 125
            +  +    Y      +V + V    SF NVK+ W+ EI  +  +    LLVG + DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRD 121
Query: 126 ----------TANKVVSYETAKAFADEI-GIPFMETSAKSATNVEQAF 162
                        K ++ ETA+  A ++  + ++E SA +   ++  F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex Length = 194

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K +++GD  VGK+CLL+ +  + +   Y+ T+  ++ + TV   G+   L ++DTAGQE
Sbjct: 7   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 65
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDL-- 125
            +  +    Y      +V + V    SF NVK+ W+ EI  +  +    LLVG + DL  
Sbjct: 66  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRD 124
Query: 126 ----------TANKVVSYETAKAFADEI-GIPFMETSAKSATNVEQAF 162
                        K ++ ETA+  A ++  + ++E SA +   ++  F
Sbjct: 125 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 172

>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is Required Length = 189

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K +++GD  VGK+CLL+ +  + +   Y+ T+  ++ + TV   G+   L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDL-- 125
            +  +    Y      +V + V    SF NVK+ W+ EI  +  +    LLVG + DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRD 121
Query: 126 ----------TANKVVSYETAKAFADEI-GIPFMETSAKSATNVEQAF 162
                        K ++ ETA+  A ++  + ++E SA +   ++  F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The Crib Domain Of Human P21-Activated Kinase 6 (Pak6) Length = 192

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K +++GD  VGK+CLL+ +  + +   Y+ T+  ++ + TV   G+   L ++DTAGQE
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 63
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDL-- 125
            +  +    Y      +V + V    SF NVK+ W+ EI  +  +    LLVG + DL  
Sbjct: 64  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRD 122
Query: 126 ----------TANKVVSYETAKAFADEI-GIPFMETSAKSATNVEQAF 162
                        K ++ ETA+  A ++  + ++E SA +   ++  F
Sbjct: 123 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 170

>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX. Length = 191

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K +++GD  VGK+CLL+ +  + +   Y+ T+  ++ + TV   G+   L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDL-- 125
            +  +    Y      +V + V    SF NVK+ W+ EI  +  +    LLVG + DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRD 121
Query: 126 ----------TANKVVSYETAKAFADEI-GIPFMETSAKSATNVEQAF 162
                        K ++ ETA+  A ++  + ++E SA +   ++  F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42. Length = 190

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K +++GD  VGK+CLL+ +  + +   Y+ T+  ++ + TV   G+   L ++DTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 64
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDL-- 125
            +  +    Y      +V + V    SF NVK+ W+ EI  +  +    LLVG + DL  
Sbjct: 65  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRD 123
Query: 126 ----------TANKVVSYETAKAFADEI-GIPFMETSAKSATNVEQAF 162
                        K ++ ETA+  A ++  + ++E SA +   ++  F
Sbjct: 124 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 171

>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain Sopb In Complex With Cdc42 Length = 193

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K +++GD  VGK+CLL+ +  + +   Y+ T+  ++ + TV   G+   L ++DTAGQE
Sbjct: 14  IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 72
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDL-- 125
            +  +    Y      +V + V    SF NVK+ W+ EI  +  +    LLVG + DL  
Sbjct: 73  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRD 131
Query: 126 ----------TANKVVSYETAKAFADEI-GIPFMETSAKSATNVEQAF 162
                        K ++ ETA+  A ++  + ++E SA +   ++  F
Sbjct: 132 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 179

>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In Complex With The Multifunctional Regulator Rhogdi Length = 191

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K +++GD  VGK+CLL+ +  + +   Y+ T+  ++ + TV   G+   L ++DTAGQE
Sbjct: 7   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 65
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDL-- 125
            +  +    Y      +V + V    SF NVK+ W+ EI  +  +    LLVG + DL  
Sbjct: 66  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRD 124
Query: 126 ----------TANKVVSYETAKAFADEI-GIPFMETSAKSATNVEQAF 162
                        K ++ ETA+  A ++  + ++E SA +   ++  F
Sbjct: 125 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 172

>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures Length = 194

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K +++GD  VGK+CLL+ +  + +   Y+ T+  ++ + TV   G+   L ++DTAGQE
Sbjct: 11  IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 69
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDL-- 125
            +  +    Y      +V + V    SF NVK+ W+ EI  +  +    LLVG + DL  
Sbjct: 70  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRD 128
Query: 126 ----------TANKVVSYETAKAFADEI-GIPFMETSAKSATNVEQAF 162
                        K ++ ETA+  A ++  + ++E SA +   ++  F
Sbjct: 129 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 176

>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN Complex With The Placental Isoform Of Human Cdc42 Length = 188

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K +++GD  VGK+CLL+ +  + +   Y+ T+  ++ + TV   G+   L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDL-- 125
            +  +    Y      +V + V    SF NVK+ W+ EI  +  +    LLVG + DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRD 121
Query: 126 ----------TANKVVSYETAKAFADEI-GIPFMETSAKSATNVEQAF 162
                        K ++ ETA+  A ++  + ++E SA +   ++  F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/191 (29%), Positives = 95/191 (49%), Gaps = 11/191 (5%)
Query: 9   FKLLLIGDSGVGKSCLLLRFA--DDSYLESYISTIGVDFKIRTVEQDGKT---IKLQIWD 63
           ++++LIG+ GVGKS L   FA   DS ++S    +G D   RT+  DG++   I L +W+
Sbjct: 7   YRVVLIGEQGVGKSTLANIFAGVHDS-MDSDXEVLGEDTYERTLMVDGESATIILLDMWE 65
Query: 64  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDR-YASENVNKLLVGNK 122
             G+  +  +     +     ++VY +TD+ SF    +   ++ R   +E++  +LVGNK
Sbjct: 66  NKGENEW--LHDHXMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNK 123
Query: 123 CDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNA 182
            DL   + VS    +A A      F+ETSA    NV++ F  +   ++ R  S+    N 
Sbjct: 124 SDLVRXREVSVSEGRAXAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLRRDSKE--KNE 181
Query: 183 RPPTVQIRGQP 193
           R    Q R + 
Sbjct: 182 RRLAYQKRKES 192

>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp Form Length = 191

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K +++GD  VGK+CLL+ +  + +   Y+ T+  ++ + TV   G+   L ++DTAGQE
Sbjct: 4   IKCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDL-- 125
            +  +    Y      +V + V    SF NVK+ W+ EI  +  +    LLVG + DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRD 121
Query: 126 ----------TANKVVSYETAKAFADEI-GIPFMETSAKSATNVEQAF 162
                        K ++ ETA+  A ++  + ++E SA +   ++  F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase Binding Domain Of Wasp Length = 179

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 83/167 (49%), Gaps = 16/167 (9%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           K +++GD  VGK+CLL+ +  + +   Y+ T+  ++ + TV   G+   L ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDL--- 125
           +  +    Y      +V + V    SF NVK+ W+ EI  +  +    LLVG + DL   
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 126 ---------TANKVVSYETAKAFADEI-GIPFMETSAKSATNVEQAF 162
                       K ++ ETA+  A ++  + ++E SA +   ++  F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 57/191 (29%), Positives = 95/191 (49%), Gaps = 11/191 (5%)
Query: 9   FKLLLIGDSGVGKSCLLLRFA--DDSYLESYISTIGVDFKIRTVEQDGKT---IKLQIWD 63
           ++++LIG+ GVGKS L   FA   DS ++S    +G D   RT+  DG++   I L +W+
Sbjct: 7   YRVVLIGEQGVGKSTLANIFAGVHDS-MDSDXEVLGEDTYERTLMVDGESATIILLDMWE 65
Query: 64  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDR-YASENVNKLLVGNK 122
             G+  +  +     +     ++VY +TD+ SF    +   ++ R   +E++  +LVGNK
Sbjct: 66  NKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNK 123
Query: 123 CDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNA 182
            DL   + VS    +A A      F+ETSA    NV++ F  +   ++ R  S+    N 
Sbjct: 124 SDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQVRLRRDSKE--KNE 181
Query: 183 RPPTVQIRGQP 193
           R    Q R + 
Sbjct: 182 RRLAYQKRKES 192

>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens) Length = 177

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 83/167 (49%), Gaps = 16/167 (9%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           K +++GD  VGK+CLL+ +  + +   Y+ T+  ++ + TV   G+   L ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDL--- 125
           +  +    Y      +V + V    SF NVK+ W+ EI  +  +    LLVG + DL   
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 126 ---------TANKVVSYETAKAFADEI-GIPFMETSAKSATNVEQAF 162
                       K ++ ETA+  A ++  + ++E SA +   ++  F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVF 169

>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex With Cdc42 (T17n Mutant) Length = 195

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K +++GD  VGK+CLL+ +  + +   Y+ T+  ++ + TV   G+   L ++DTAGQE
Sbjct: 11  IKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 69
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDL-- 125
            +  +    Y      +V + V    SF NVK+ W+ EI  +  +    LLVG + DL  
Sbjct: 70  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRD 128
Query: 126 ----------TANKVVSYETAKAFADEI-GIPFMETSAKSATNVEQAF 162
                        K ++ ETA+  A ++  + ++E SA +   ++  F
Sbjct: 129 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 176

>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex Length = 182

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 83/167 (49%), Gaps = 16/167 (9%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           K +++GD  VGK+CLL+ +  + +   Y+ T+  ++ + TV   G+   L ++DTAGQE 
Sbjct: 9   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 67
Query: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDL--- 125
           +  +    Y      +V + V    SF NVK+ W+ EI  +  +    LLVG + DL   
Sbjct: 68  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 126
Query: 126 ---------TANKVVSYETAKAFADEI-GIPFMETSAKSATNVEQAF 162
                       K ++ ETA+  A ++  + ++E SA +   ++  F
Sbjct: 127 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 173

>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of The Salmonella Typhimurium Sope Toxin And Human Cdc42 Length = 180

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 83/167 (49%), Gaps = 16/167 (9%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           K +++GD  VGK+CLL+ +  + +   Y+ T+  ++ + TV   G+   L ++DTAGQE 
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 65
Query: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDL--- 125
           +  +    Y      +V + V    SF NVK+ W+ EI  +  +    LLVG + DL   
Sbjct: 66  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 124
Query: 126 ---------TANKVVSYETAKAFADEI-GIPFMETSAKSATNVEQAF 162
                       K ++ ETA+  A ++  + ++E SA +   ++  F
Sbjct: 125 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 171

>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The Active Gtp Bound State Length = 198

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 90/183 (49%), Gaps = 17/183 (9%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           KL+L+GD   GK+ +L   A D Y E+Y+ T+  ++    +E + + ++L +WDT+G   
Sbjct: 13  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTA-CLETEEQRVELSLWDTSGSPY 71
Query: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNN-VKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
           +  +    Y  +  +++ +D++  E+ ++ +K+W  EI  Y   +   LL+G K DL  +
Sbjct: 72  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCP-STRVLLIGCKTDLRTD 130
Query: 129 ------------KVVSYETAKAFADEIGIP-FMETSA-KSATNVEQAFMAMAASIKNRMA 174
                         +SYE   A A ++G   ++E SA  S  ++   F   +    N+ +
Sbjct: 131 LSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKPS 190
Query: 175 SQP 177
             P
Sbjct: 191 PLP 193

>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With Cdc42-Gmppnp Length = 178

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 83/167 (49%), Gaps = 16/167 (9%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           K +++GD  VGK+CLL+ +  + +   Y+ T+  ++ + TV   G+   L ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDL--- 125
           +  +    Y      +V + V    SF NVK+ W+ EI  +  +    LLVG + DL   
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 126 ---------TANKVVSYETAKAFADEI-GIPFMETSAKSATNVEQAF 162
                       K ++ ETA+  A ++  + ++E SA +   ++  F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVF 169

>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide Derived From P-21 Activated Kinase, Nmr, 20 Structures Length = 178

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 83/167 (49%), Gaps = 16/167 (9%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           K +++GD  VGK+CLL+ +  + +   Y+ T+  ++ + TV   G+   L ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDL--- 125
           +  +    Y      +V + V    SF NVK+ W+ EI  +  +    LLVG + DL   
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 126 ---------TANKVVSYETAKAFADEI-GIPFMETSAKSATNVEQAF 162
                       K ++ ETA+  A ++  + ++E SA +   ++  F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound With Rnd1 Gtpase Length = 197

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 90/183 (49%), Gaps = 17/183 (9%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           KL+L+GD   GK+ +L   A D Y E+Y+ T+  ++    +E + + ++L +WDT+G   
Sbjct: 12  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTA-CLETEEQRVELSLWDTSGSPY 70
Query: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNN-VKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
           +  +    Y  +  +++ +D++  E+ ++ +K+W  EI  Y   +   LL+G K DL  +
Sbjct: 71  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCP-STRVLLIGCKTDLRTD 129
Query: 129 ------------KVVSYETAKAFADEIGIP-FMETSA-KSATNVEQAFMAMAASIKNRMA 174
                         +SYE   A A ++G   ++E SA  S  ++   F   +    N+ +
Sbjct: 130 LSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKPS 189
Query: 175 SQP 177
             P
Sbjct: 190 PLP 192

>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1 Length = 214

Iteration: 1
 Score = 71.2 bits (173), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 90/183 (49%), Gaps = 17/183 (9%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           KL+L+GD   GK+ +L   A D Y E+Y+ T+  ++    +E + + ++L +WDT+G   
Sbjct: 29  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTA-CLETEEQRVELSLWDTSGSPY 87
Query: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNN-VKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
           +  +    Y  +  +++ +D++  E+ ++ +K+W  EI  Y   +   LL+G K DL  +
Sbjct: 88  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCP-STRVLLIGCKTDLRTD 146
Query: 129 ------------KVVSYETAKAFADEIGIP-FMETSA-KSATNVEQAFMAMAASIKNRMA 174
                         +SYE   A A ++G   ++E SA  S  ++   F   +    N+ +
Sbjct: 147 LSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKPS 206
Query: 175 SQP 177
             P
Sbjct: 207 PLP 209

>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp Length = 175

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 82/158 (51%), Gaps = 4/158 (2%)
Query: 8   LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
           L++++L+GD GVGK+ L   FA     + +   +G D   RT+  DG+   L + DT   
Sbjct: 4   LYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVVVDTWEA 62
Query: 68  ERFRTITS--SYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDR-YASENVNKLLVGNKCD 124
           E+     S  S  +G    ++VY + D+ SF +  +   ++ R + +++V  +LVGNK D
Sbjct: 63  EKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKAD 122
Query: 125 LTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAF 162
           L   + VS E  +A A      F+ETSA    NV + F
Sbjct: 123 LARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160

>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem Length = 211

Iteration: 1
 Score = 70.1 bits (170), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 90/175 (51%), Gaps = 9/175 (5%)
Query: 9   FKLLLIGDSGVGKSCLLLRFA--DDSYLESYISTIGVDFKIRTVEQDGKT---IKLQIWD 63
           ++++LIG+ GVGKS L   FA   DS ++S    +G D   RT+  DG++   I L +W+
Sbjct: 38  YRVVLIGEQGVGKSTLANIFAGVHDS-MDSDCEVLGEDTYERTLMVDGESATIILLDMWE 96
Query: 64  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDR-YASENVNKLLVGNK 122
             G+  +  +     +     ++VY +TD+ SF    +   ++ R   +E++  +LVGNK
Sbjct: 97  NKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNK 154
Query: 123 CDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQP 177
            DL   + VS    +A A      F+ETSA    NV++ F  +   ++ R  S+ 
Sbjct: 155 SDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLRRDSKE 209

>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs Length = 178

Iteration: 1
 Score = 70.1 bits (170), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 82/168 (48%), Gaps = 16/168 (9%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K +++GD  VGK+CLL+ +  +     Y+ T+  ++ + TV   G+   L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDL-- 125
            +  +    Y      +V + V    SF NVK+ W+ EI  +  +    LLVG + DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRD 121
Query: 126 ----------TANKVVSYETAKAFADEI-GIPFMETSAKSATNVEQAF 162
                        K ++ ETA+  A ++  + ++E SA +   ++  F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42 And Nucleotide Exchange Domains Of Intersectin Length = 178

Iteration: 1
 Score = 70.1 bits (170), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 82/168 (48%), Gaps = 16/168 (9%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K +++GD  VGK+CLL+ +  + +   Y+ T+  ++ + TV   G+   L + DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLRDTAGQE 62
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDL-- 125
            +  +    Y      +V + V    SF NVK+ W+ EI  +  +    LLVG + DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRD 121
Query: 126 ----------TANKVVSYETAKAFADEI-GIPFMETSAKSATNVEQAF 162
                        K ++ ETA+  A ++  + ++E SA +   ++  F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp Length = 174

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 88/170 (51%), Gaps = 9/170 (5%)
Query: 9   FKLLLIGDSGVGKSCLLLRFA--DDSYLESYISTIGVDFKIRTVEQDGKT---IKLQIWD 63
           ++++LIG+ GVGKS L   FA   DS ++S    +G D   RT+  DG++   I L +W+
Sbjct: 7   YRVVLIGEQGVGKSTLANIFAGVHDS-MDSDCEVLGEDTYERTLMVDGESATIILLDMWE 65
Query: 64  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDR-YASENVNKLLVGNK 122
             G+  +  +     +     ++VY +TD+ SF    +   ++ R   +E++  +LVGNK
Sbjct: 66  NKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNK 123
Query: 123 CDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
            DL   + VS    +A A      F+ETSA    NV++ F  +   ++ R
Sbjct: 124 SDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLR 173

>pdb|2KB0|A Chain A, Cdc42(T35a) Length = 178

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           K +++GD  VGK+CLL+ +  + +   Y+  +  ++ + TV   G+   L ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDL--- 125
           +  +    Y      +V + V    SF NVK+ W+ EI  +  +    LLVG + DL   
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 126 ---------TANKVVSYETAKAFADEI-GIPFMETSAKSATNVEQAF 162
                       K ++ ETA+  A ++  + ++E SA +   ++  F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding Domain Of The Cell Polarity Protein, Par6 Length = 195

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 82/168 (48%), Gaps = 16/168 (9%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K +++GD  VGK+CLL+ +  + +   Y+ T+  ++ + TV   G+   L ++DTAG E
Sbjct: 8   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGLE 66
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDL-- 125
            +  +    Y      +V + V    SF NVK+ W+ EI  +  +    LLVG + DL  
Sbjct: 67  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRD 125
Query: 126 ----------TANKVVSYETAKAFADEI-GIPFMETSAKSATNVEQAF 162
                        K ++ ETA+  A ++  + ++E SA +   ++  F
Sbjct: 126 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 173

>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium Length = 194

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 82/158 (51%), Gaps = 6/158 (3%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K++++GD  VGK+CLLL F+      +Y+ T+  +F    ++   +   L +WDTAGQE
Sbjct: 24  LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQE 82
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTA 127
            +  +    Y  +  +++ + V ++ SF+N+  +W  EI  Y  +    +LVG K DL  
Sbjct: 83  EYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYI-DTAKTVLVGLKVDLRK 141
Query: 128 NKV--VSYETAKAFADEIG-IPFMETSAKSATNVEQAF 162
           +    V+ +       ++G + ++E S+ +   + + F
Sbjct: 142 DGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVF 179

>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex Length = 184

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           K +++GD  VGK+CLL+ +  + +   Y+ T+  ++ + TV   G+   L ++DTAG E 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGLED 63
Query: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDL--- 125
           +  +    Y      +V + V    SF NVK+ W+ EI  +  +    LLVG + DL   
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 126 ---------TANKVVSYETAKAFADEI-GIPFMETSAKSATNVEQAF 162
                       K ++ ETA+  A ++  + ++E SA +   ++  F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To Ehrho1-Gtpgammas Length = 188

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 82/158 (51%), Gaps = 6/158 (3%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K++++GD  VGK+CLLL F+      +Y+ T+  +F    ++   +   L +WDTAGQE
Sbjct: 23  LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQE 81
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTA 127
            +  +    Y  +  +++ + V ++ SF+N+  +W  EI  Y  +    +LVG K DL  
Sbjct: 82  EYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYI-DTAKTVLVGLKVDLRK 140
Query: 128 NKV--VSYETAKAFADEIG-IPFMETSAKSATNVEQAF 162
           +    V+ +       ++G + ++E S+ +   + + F
Sbjct: 141 DGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVF 178

>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp Length = 176

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 84/175 (48%), Gaps = 9/175 (5%)
Query: 8   LFKLLLIGDSGVGKSCLLLRFA---DDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDT 64
           ++K+LL+G  GVGKS L   F    D    E+   T       R++  DG+   L ++D 
Sbjct: 7   VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYD-----RSIVVDGEEASLMVYDI 61
Query: 65  AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDR-YASENVNKLLVGNKC 123
             Q+  R +           ++VY VTD+ SF    +   ++ R   +++V  +LVGNK 
Sbjct: 62  WEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKS 121
Query: 124 DLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPA 178
           DL  ++ VS +  +A A      F+ETSA    NV+  F  +   I+ R  S+ A
Sbjct: 122 DLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLRRDSKEA 176

>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase Length = 174

Iteration: 1
 Score = 66.6 bits (161), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 83/173 (47%), Gaps = 9/173 (5%)
Query: 8   LFKLLLIGDSGVGKSCLLLRFA---DDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDT 64
           ++K+LL+G  GVGKS L   F    D    E+   T       R++  DG+   L ++D 
Sbjct: 7   VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYD-----RSIVVDGEEASLMVYDI 61
Query: 65  AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDR-YASENVNKLLVGNKC 123
             Q+  R +           ++VY VTD+ SF    +   ++ R   +++V  +LVGNK 
Sbjct: 62  WEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKS 121
Query: 124 DLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQ 176
           DL  ++ VS +  +A A      F+ETSA    NV+  F  +   I+ R  S+
Sbjct: 122 DLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLRRDSK 174

>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex Length = 166

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 81/169 (47%), Gaps = 9/169 (5%)
Query: 8   LFKLLLIGDSGVGKSCLLLRFA---DDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDT 64
           ++K+LL+G  GVGKS L   F    D    E+   T       R++  DG+   L ++D 
Sbjct: 2   VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYD-----RSIVVDGEEASLMVYDI 56
Query: 65  AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDR-YASENVNKLLVGNKC 123
             Q+  R +           ++VY VTD+ SF    +   ++ R   +++V  +LVGNK 
Sbjct: 57  WEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKS 116
Query: 124 DLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
           DL  ++ VS +  +A A      F+ETSA    NV+  F  +   I+ R
Sbjct: 117 DLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLR 165

>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas Length = 208

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 86/171 (50%), Gaps = 13/171 (7%)
Query: 10  KLLLIGDSGVGKSCLLLRFAD--DSYLESYISTIGVDFKIRTVEQDGKTIKLQIW--DTA 65
           K+ ++G++ VGKS L+  F      +L+ Y  T GV+  +  V     T+ ++++  DTA
Sbjct: 22  KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81
Query: 66  GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEI-----DRYASENVNKLLVG 120
           G + ++   S Y+ G +  I+V+DV+  ESF + K W   +     DR     +  +LV 
Sbjct: 82  GSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDR--ERPLRAVLVA 139
Query: 121 NKCDLTANK-VVSYETAKAFADEIGIPFMETSA-KSATNVEQAFMAMAASI 169
           NK DL   +  V  + A+ +A    + F + SA     + +  F+++A + 
Sbjct: 140 NKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTF 190

>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b Length = 188

Iteration: 1
 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 60/120 (50%), Gaps = 5/120 (4%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            +L L+G    GK+  +   A   + E  I T+G  F +R + +   TIKL  WD  GQ 
Sbjct: 23  MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTIKL--WDIGGQP 78
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWL-NEIDRYASENVNKLLVGNKCDLTA 127
           RFR++   Y RG   I+ + D  DQE     K  L N +D+   + +  L++GNK DL  
Sbjct: 79  RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPG 138

>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b (Arl10b) Length = 193

Iteration: 1
 Score = 63.5 bits (153), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 60/120 (50%), Gaps = 5/120 (4%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            +L L+G    GK+  +   A   + E  I T+G  F +R + +   TIKL  WD  GQ 
Sbjct: 32  MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTIKL--WDIGGQP 87
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWL-NEIDRYASENVNKLLVGNKCDLTA 127
           RFR++   Y RG   I+ + D  DQE     K  L N +D+   + +  L++GNK DL  
Sbjct: 88  RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPG 147

>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 61/118 (51%), Gaps = 5/118 (4%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            +L L+G    GK+  +   A   + E  I T+G  F +R V +   TIK  IWD  GQ 
Sbjct: 23  MELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVG--FNMRKVTKGNVTIK--IWDIGGQP 78
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWL-NEIDRYASENVNKLLVGNKCDL 125
           RFR++   Y RG + I+ + D  D+E     +  L N +D+   + +  L++GNK DL
Sbjct: 79  RFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDL 136

>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp Length = 195

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 81/185 (43%), Gaps = 12/185 (6%)
Query: 1   MNNEYDYLFKLLLIGDSGVGKSCLLLRFAD---DSYLESYISTIGVDFKIRTVEQDGKTI 57
              + D +FK++L+G+SGVGKS L   F     DS  E        + +I   +++   +
Sbjct: 16  FQGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLV 75
Query: 58  KLQIW---DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDR-YASEN 113
              IW   D  G  R   + +         ++V+ VTD+ SF+ V + L  +       +
Sbjct: 76  VYDIWEQGDAGGWLRDHCLQT-----GDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHD 130
Query: 114 VNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRM 173
           +  +LVGNK DL  ++ VS E  +  A  +    +ETSA    N  + F      I+ R 
Sbjct: 131 LPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLRR 190
Query: 174 ASQPA 178
               A
Sbjct: 191 GRNHA 195

>pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Soaked With Calcium Length = 497

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 61/120 (50%), Gaps = 10/120 (8%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIG-VDFKIRTVEQDGKTIKLQIWDTAGQ 67
            ++L++G    GK+ +L +      L   ++TI  V F + TV    K +K  +WD  GQ
Sbjct: 323 MRILMLGLDAAGKTTILYKLK----LGQSVTTIPTVGFNVETVTY--KNVKFNVWDVGGQ 376
Query: 68  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEI--DRYASENVNKLLVGNKCDL 125
           ++ R +   YY G  G+I V D  D++  +  +Q L+ I  DR   + +  L+  NK DL
Sbjct: 377 DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFANKQDL 435

>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound To Gdp Length = 180

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 79/171 (46%), Gaps = 6/171 (3%)
Query: 6   DYLFKLLLIGDSGVGKSCLLLRFAD---DSYLESYISTIGVDFKIRTVEQDGKTIKLQIW 62
           D +FK++L+G+SGVGKS L   F     D+  E   S    + +I   +++   I   IW
Sbjct: 10  DGVFKVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIMVDKEEVTLIVYDIW 69
Query: 63  DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDR-YASENVNKLLVGN 121
           +      +  +     +     ++V+ VTD+ SF+ V + L  +       ++  +LVGN
Sbjct: 70  EQGDAGGW--LQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGN 127
Query: 122 KCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
           K DL  ++ VS E  +  A  +    +ETSA    N  + F      I+ R
Sbjct: 128 KSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLR 178

>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex Length = 169

Iteration: 1
 Score = 57.8 bits (138), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 77/169 (45%), Gaps = 6/169 (3%)
Query: 8   LFKLLLIGDSGVGKSCLLLRFAD---DSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDT 64
           +FK++L+G+SGVGKS L   F     D   E   S    + +I   +++   I   IW+ 
Sbjct: 2   VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQ 61
Query: 65  AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDR-YASENVNKLLVGNKC 123
                +  +     +     ++V+ VTD+ SF+ V + L  +       ++  +LVGNK 
Sbjct: 62  GDAGGW--LQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKS 119
Query: 124 DLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
           DL  ++ VS E  +  A  +    +ETSA    N  + F      I+ R
Sbjct: 120 DLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLR 168

>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex Length = 160

Iteration: 1
 Score = 57.8 bits (138), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 61/120 (50%), Gaps = 10/120 (8%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIG-VDFKIRTVEQDGKTIKLQIWDTAGQ 67
            ++L++G    GK+ +L +      L   ++TI  V F + TV    K +K  +WD  GQ
Sbjct: 1   MRILMLGLDAAGKTTILYKLK----LGQSVTTIPTVGFNVETVTY--KNVKFNVWDVGGQ 54
Query: 68  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEI--DRYASENVNKLLVGNKCDL 125
           ++ R +   YY G  G+I V D  D++  +  +Q L+ I  DR   + +  L+  NK DL
Sbjct: 55  DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFANKQDL 113

>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp Length = 174

Iteration: 1
 Score = 57.4 bits (137), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 61/120 (50%), Gaps = 10/120 (8%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIG-VDFKIRTVEQDGKTIKLQIWDTAGQ 67
            ++L++G    GK+ +L +      L   ++TI  V F + TV    K +K  +WD  GQ
Sbjct: 13  MRILMLGLDAAGKTTILYKLK----LGQSVTTIPTVGFNVETVTY--KNVKFNVWDVGGQ 66
Query: 68  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEI--DRYASENVNKLLVGNKCDL 125
           ++ R +   YY G  G+I V D  D++  +  +Q L+ I  DR   + +  L+  NK DL
Sbjct: 67  DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFANKQDL 125

>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp Length = 162

Iteration: 1
 Score = 57.4 bits (137), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 61/120 (50%), Gaps = 10/120 (8%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIG-VDFKIRTVEQDGKTIKLQIWDTAGQ 67
            ++L++G    GK+ +L +      L   ++TI  V F + TV    K +K  +WD  GQ
Sbjct: 1   MRILMLGLDAAGKTTILYKLK----LGQSVTTIPTVGFNVETVTY--KNVKFNVWDVGGQ 54
Query: 68  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEI--DRYASENVNKLLVGNKCDL 125
           ++ R +   YY G  G+I V D  D++  +  +Q L+ I  DR   + +  L+  NK DL
Sbjct: 55  DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFANKQDL 113

>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By Human Arf6-Gtp Length = 175

Iteration: 1
 Score = 57.4 bits (137), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 61/120 (50%), Gaps = 10/120 (8%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIG-VDFKIRTVEQDGKTIKLQIWDTAGQ 67
            ++L++G    GK+ +L +      L   ++TI  V F + TV    K +K  +WD  GQ
Sbjct: 14  MRILMLGLDAAGKTTILYKLK----LGQSVTTIPTVGFNVETVTY--KNVKFNVWDVGGQ 67
Query: 68  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEI--DRYASENVNKLLVGNKCDL 125
           ++ R +   YY G  G+I V D  D++  +  +Q L+ I  DR   + +  L+  NK DL
Sbjct: 68  DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFANKQDL 126

>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 164

Iteration: 1
 Score = 57.4 bits (137), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 9/167 (5%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            ++L++G  G GK+ +L +      + + I TIG  F + TV+   K I   +WD  GQ+
Sbjct: 1   MRILMVGLDGAGKTTVLYKLKLGEVITT-IPTIG--FNVETVQY--KNISFTVWDVGGQD 55
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNE-IDRYASENVNKLLVGNKCDLTA 127
           R R++   YYR   G+I V D  D+      ++ +   ++     N   L+  NK DL  
Sbjct: 56  RIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPE 115
Query: 128 NKVVSYETAKAFADEI-GIPFM--ETSAKSATNVEQAFMAMAASIKN 171
               +  T K     I   P+    T A S   + +    ++ S+KN
Sbjct: 116 AMSAAEITEKLGLHSIRNRPWFIQATCATSGEGLYEGLEWLSNSLKN 162

>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein, Gdp- Bound Length = 181

Iteration: 1
 Score = 57.4 bits (137), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 6/118 (5%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            ++L++G  G GK+ +L +      + + I TIG  F + TV+   K I   +WD  GQ+
Sbjct: 18  MRILMVGLDGAGKTTVLYKLKLGEVITT-IPTIG--FNVETVQY--KNISFTVWDVGGQD 72
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNE-IDRYASENVNKLLVGNKCDL 125
           R R++   YYR   G+I V D  D+      ++ +   ++     N   L+  NK DL
Sbjct: 73  RIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDL 130

>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution Length = 181

Iteration: 1
 Score = 56.6 bits (135), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 6/118 (5%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            ++L++G  G GK+ +L +      + + I TIG  F + TV+   K I   +WD  GQ+
Sbjct: 18  MRILMVGLDGAGKTTVLYKLKLGEVITT-IPTIG--FNVETVQY--KNISFTVWDVGGQD 72
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNE-IDRYASENVNKLLVGNKCDL 125
           R R++   YYR   G+I V D  D+      ++ +   ++     N   L+  NK DL
Sbjct: 73  RIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNAVWLVFANKQDL 130

>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex Length = 162

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 10/119 (8%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIG-VDFKIRTVEQDGKTIKLQIWDTAGQE 68
           ++L +G    GK+ +L +      L   ++TI  V F + TV    K +K  +WD  GQ+
Sbjct: 2   RILXLGLDAAGKTTILYKLK----LGQSVTTIPTVGFNVETVTY--KNVKFNVWDVGGQD 55
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEI--DRYASENVNKLLVGNKCDL 125
           + R +   YY G  G+I V D  D++  +  +Q L+ I  DR   + +  L+  NK DL
Sbjct: 56  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREXRDAI-ILIFANKQDL 113

>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 61/121 (50%), Gaps = 12/121 (9%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            ++L++G    GK+ +L +      + + I TIG  F + TVE   K I   +WD  GQ+
Sbjct: 166 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQD 220
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNK----LLVGNKCD 124
           + R +   Y++   G+I V D  D+E  N  ++   E+ R  +E+  +    L+  NK D
Sbjct: 221 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEARE---ELMRMLAEDELRDAVLLVFANKQD 277
Query: 125 L 125
           L
Sbjct: 278 L 278

>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A Specific Effector, Jip4 Length = 165

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 10/120 (8%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIG-VDFKIRTVEQDGKTIKLQIWDTAGQ 67
            ++L++G    GK+ +L +      L   ++TI  V F + TV    K +K  +WD  G 
Sbjct: 4   MRILMLGLDAAGKTTILYKLK----LGQSVTTIPTVGFNVETVTY--KNVKFNVWDVGGL 57
Query: 68  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEI--DRYASENVNKLLVGNKCDL 125
           ++ R +   YY G  G+I V D  D++  +  +Q L+ I  DR   + +  L+  NK DL
Sbjct: 58  DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFANKQDL 116

>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With Brefeldin A Length = 164

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 61/121 (50%), Gaps = 12/121 (9%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            ++L++G    GK+ +L +      + + I TIG  F + TVE   K I   +WD  GQ+
Sbjct: 1   MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQD 55
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNK----LLVGNKCD 124
           + R +   Y++   G+I V D  D+E  N  ++   E+ R  +E+  +    L+  NK D
Sbjct: 56  KIRPLWRHYFQNTQGLIFVVDSNDRERVNEARE---ELMRMLAEDELRDAVLLVFANKQD 112
Query: 125 L 125
           L
Sbjct: 113 L 113

>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length = 175

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 10/120 (8%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIG-VDFKIRTVEQDGKTIKLQIWDTAGQ 67
            ++L++G    GK+ +L +      L   ++TI  V F + TV    K +K  +WD  G 
Sbjct: 14  MRILMLGLDAAGKTTILYKLK----LGQSVTTIPTVGFNVETVTY--KNVKFNVWDVGGL 67
Query: 68  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEI--DRYASENVNKLLVGNKCDL 125
           ++ R +   YY G  G+I V D  D++  +  +Q L+ I  DR   + +  L+  NK DL
Sbjct: 68  DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFANKQDL 126

>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full Length = 180

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 61/121 (50%), Gaps = 12/121 (9%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            ++L++G    GK+ +L +      + + I TIG  F + TVE   K I   +WD  GQ+
Sbjct: 17  MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQD 71
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNK----LLVGNKCD 124
           + R +   Y++   G+I V D  D+E  N  ++   E+ R  +E+  +    L+  NK D
Sbjct: 72  KIRPLWRHYFQNTQGLIFVVDSNDRERVNEARE---ELMRMLAEDELRDAVLLVFANKQD 128
Query: 125 L 125
           L
Sbjct: 129 L 129

>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed With Gdp, Dimeric Crystal Form Length = 181

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 61/121 (50%), Gaps = 12/121 (9%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            ++L++G    GK+ +L +      + + I TIG  F + TVE   K I   +WD  GQ+
Sbjct: 18  MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQD 72
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNK----LLVGNKCD 124
           + R +   Y++   G+I V D  D+E  N  ++   E+ R  +E+  +    L+  NK D
Sbjct: 73  KIRPLWRHYFQNTQGLIFVVDSNDRERVNEARE---ELMRMLAEDELRDAVLLVFANKQD 129
Query: 125 L 125
           L
Sbjct: 130 L 130

>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like Protein 1) Complex Length = 172

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 10/120 (8%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIG-VDFKIRTVEQDGKTIKLQIWDTAGQ 67
            ++L++G    GK+ +L +      L   ++TI  V F + TV    K +K  +WD  G 
Sbjct: 3   MRILMLGLDAAGKTTILYKLK----LGQSVTTIPTVGFNVETVTY--KNVKFNVWDVGGL 56
Query: 68  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEI--DRYASENVNKLLVGNKCDL 125
           ++ R +   YY G  G+I V D  D++  +  +Q L+ I  DR   + +  L+  NK DL
Sbjct: 57  DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFANKQDL 115

>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1 Length = 192

Iteration: 1
 Score = 53.5 bits (127), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 63/120 (52%), Gaps = 10/120 (8%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            +LL++G    GK+ +L +F  +  +++   T+G  F I+T+E  G   KL IWD  GQ+
Sbjct: 17  LRLLMLGLDNAGKTTILKKFNGED-IDTISPTLG--FNIKTLEHRG--FKLNIWDVGGQK 71
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEI---DRYASENVNKLLVGNKCDL 125
             R+   +Y+    G+I V D  D++   + ++ L  +   +R A   +  L+  NK DL
Sbjct: 72  SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATL--LIFANKQDL 129

>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor Like Protein 1 (Arl1) And Grip Domain Of Golgin245 Complex Length = 165

Iteration: 1
 Score = 53.5 bits (127), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 76/175 (43%), Gaps = 23/175 (13%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            ++L++G  G GK+ +L R      + + I TIG  F + TV    K +K Q+WD  GQ 
Sbjct: 3   MRILILGLDGAGKTTILYRLQVGEVVTT-IPTIG--FNVETVTY--KNLKFQVWDLGGQT 57
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLV---GNKCDL 125
             R     YY     +I V D  D++     K  L  +     E + K ++    NK D+
Sbjct: 58  SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSEL--VAMLEEEELRKAILVVFANKQDM 115
Query: 126 TANKVVSYETAKAFADEIGIP--------FMETSAKSATNVEQAFMAMAASIKNR 172
                    T    A+ +G+P          +TSA   T +++A   +  ++K+R
Sbjct: 116 EQAM-----TPSEMANALGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 165

>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native) Length = 186

Iteration: 1
 Score = 53.1 bits (126), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 63/120 (52%), Gaps = 10/120 (8%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            +LL++G    GK+ +L +F  +  +++   T+G  F I+T+E  G   KL IWD  GQ+
Sbjct: 19  LRLLMLGLDNAGKTTILKKFNGED-VDTISPTLG--FNIKTLEHRG--FKLNIWDVGGQK 73
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEI---DRYASENVNKLLVGNKCDL 125
             R+   +Y+    G+I V D  D++   + ++ L  +   +R A   +  L+  NK DL
Sbjct: 74  SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATL--LIFANKQDL 131

>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1 Length = 186

Iteration: 1
 Score = 53.1 bits (126), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 63/120 (52%), Gaps = 10/120 (8%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            +LL++G    GK+ +L +F  +  +++   T+G  F I+T+E  G   KL IWD  GQ+
Sbjct: 19  LRLLMLGLDNAGKTTILKKFNGED-VDTISPTLG--FNIKTLEHRG--FKLNIWDVGGQK 73
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEI---DRYASENVNKLLVGNKCDL 125
             R+   +Y+    G+I V D  D++   + ++ L  +   +R A   +  L+  NK DL
Sbjct: 74  SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATL--LIFANKQDL 131

>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum Adp-Ribosylation Factor 1 Length = 181

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 12/120 (10%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           ++L++G    GK+ +L +      + + I TIG  F + TVE   + I   +WD  GQ++
Sbjct: 19  RILMVGLDAAGKTTILYKVKLGEVVTT-IPTIG--FNVETVE--FRNISFTVWDVGGQDK 73
Query: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNK----LLVGNKCDL 125
            R +   YY    G+I V D  D+E  ++ ++   E+ R  +E   K    L+  NK DL
Sbjct: 74  IRPLWRHYYSNTDGLIFVVDSNDRERIDDARE---ELHRMINEEELKDAIILVFANKQDL 130

>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4 Length = 180

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 60/130 (46%), Gaps = 6/130 (4%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            ++L++G    GK+ +L +      + + I TIG  F + TVE   K I   +WD  GQ+
Sbjct: 18  MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNICFTVWDVGGQD 72
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTA 127
           R R +   Y++   G+I V D  D+E    V   L ++       +   LL  NK DL  
Sbjct: 73  RIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAVLLLFANKQDLPN 132
Query: 128 NKVVSYETAK 137
              +S  T K
Sbjct: 133 AMAISEMTDK 142

>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba Histolytica Hm- 1:imss Bound To Mg-Gdp Length = 178

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 61/130 (46%), Gaps = 6/130 (4%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            ++L++G    GK+ +L +      + + I TIG  F + TVE   K I   +WD  GQ+
Sbjct: 18  MRILMVGLDAAGKTSILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQD 72
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNE-IDRYASENVNKLLVGNKCDLTA 127
           + R +   YY+    II V D  D++     ++ L + ++     N   L+  NK DL  
Sbjct: 73  KIRPLWRHYYQNTQAIIFVVDSNDRDRIGEAREELMKMLNEDEMRNAILLVFANKHDLPQ 132
Query: 128 NKVVSYETAK 137
              +S  T K
Sbjct: 133 AMSISEVTEK 142

>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In Complex With Gdp Length = 187

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 68/145 (46%), Gaps = 5/145 (3%)
Query: 11  LLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF 70
           L ++G  G GKS L ++F    ++  Y   +   +       D + + L++ DTA  +  
Sbjct: 24  LAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEET-VDHQPVHLRVMDTADLDTP 82
Query: 71  RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASE---NVNKLLVGNKCDLTA 127
           R     Y   AH  +VVY V  ++SF++   +L  +  +A E   ++  LL+GNK D+  
Sbjct: 83  RN-CERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQ 141
Query: 128 NKVVSYETAKAFADEIGIPFMETSA 152
            + V+     A A   G  F E SA
Sbjct: 142 YRQVTKAEGVALAGRFGCLFFEVSA 166

>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex With Arf1 Gtp Form Length = 166

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 12/121 (9%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            ++L++G    GK+ +L +      + + I TIG  F + TVE   K I   +WD  G +
Sbjct: 3   MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGLD 57
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNK----LLVGNKCD 124
           + R +   Y++   G+I V D  D+E  N  ++   E+ R  +E+  +    L+  NK D
Sbjct: 58  KIRPLWRHYFQNTQGLIFVVDSNDRERVNEARE---ELMRMLAEDELRDAVLLVFANKQD 114
Query: 125 L 125
           L
Sbjct: 115 L 115

>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With Unc119a Length = 169

Iteration: 1
 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 63/121 (52%), Gaps = 10/121 (8%)
Query: 8   LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
           + +LL++G    GK+ +L +F  +  +++   T+G  F I+T+E  G   KL IWD  G 
Sbjct: 1   MLRLLMLGLDNAGKTTILKKFNGED-VDTISPTLG--FNIKTLEHRG--FKLNIWDVGGL 55
Query: 68  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEI---DRYASENVNKLLVGNKCD 124
           +  R+   +Y+    G+I V D  D++   + ++ L  +   +R A   +  L+  NK D
Sbjct: 56  KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATL--LIFANKQD 113
Query: 125 L 125
           L
Sbjct: 114 L 114

>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation Disturbance By Agrobacterium Protein 6b Length = 184

Iteration: 1
 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 60/121 (49%), Gaps = 12/121 (9%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            ++L++G    GK+ +L +      + + I TIG  F + TVE   K I   +WD  GQ+
Sbjct: 21  MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQD 75
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNK----LLVGNKCD 124
           + R +   Y++   G+I V D  D++     +   +E+ R  +E+  +    L+  NK D
Sbjct: 76  KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEAR---DELHRMLNEDELRDAVLLVFANKQD 132
Query: 125 L 125
           L
Sbjct: 133 L 133

>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5 Length = 192

Iteration: 1
 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 65/133 (48%), Gaps = 12/133 (9%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            ++L++G    GK+ +L +      + + I TIG  F + TVE   K I   +WD  GQ+
Sbjct: 30  MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNICFTVWDVGGQD 84
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNK----LLVGNKCD 124
           + R +   Y++   G+I V D  D+E    V++  +E+ +   E+  +    L+  NK D
Sbjct: 85  KIRPLWRHYFQNTQGLIFVVDSNDRE---RVQESADELQKMLQEDELRDAVLLVFANKQD 141
Query: 125 LTANKVVSYETAK 137
           +     VS  T K
Sbjct: 142 MPNAMPVSELTDK 154

>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 171

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 63/126 (50%), Gaps = 7/126 (5%)
Query: 10  KLLLIGDSGVGKSCLL--LRFADDSYLESYISTIGVDFK---IRTVEQDGKTIKLQIWDT 64
           KL ++G++G GK+ LL  L     S L    +T+G+D K   I+  ++  + + L +WD 
Sbjct: 2   KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 61
Query: 65  AGQERFRTITSSYYRGAHGIIVVYDVTD-QESFNNVKQWLNEIDRYASENVNKLLVGNKC 123
           AG+E F +    +       + VYD++  Q   +  K WL  I   AS +   +LVG   
Sbjct: 62  AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSS-PVILVGTHL 120
Query: 124 DLTANK 129
           D++  K
Sbjct: 121 DVSDEK 126

>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's Disease-associated Leucine-rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 184

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 63/126 (50%), Gaps = 7/126 (5%)
Query: 10  KLLLIGDSGVGKSCLL--LRFADDSYLESYISTIGVDFK---IRTVEQDGKTIKLQIWDT 64
           KL ++G++G GK+ LL  L     S L    +T+G+D K   I+  ++  + + L +WD 
Sbjct: 4   KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 63
Query: 65  AGQERFRTITSSYYRGAHGIIVVYDVTD-QESFNNVKQWLNEIDRYASENVNKLLVGNKC 123
           AG+E F +    +       + VYD++  Q   +  K WL  I   AS +   +LVG   
Sbjct: 64  AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSS-PVILVGTHL 122
Query: 124 DLTANK 129
           D++  K
Sbjct: 123 DVSDEK 128

>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In Complex With Arl1 Length = 166

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 75/174 (43%), Gaps = 23/174 (13%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            ++L++G  G GK+ +L R      + + I TIG  F + TV    K +K Q+WD  G  
Sbjct: 5   MRILILGLDGAGKTTILYRLQVGEVVTT-IPTIG--FNVETVTY--KNLKFQVWDLGGLT 59
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLV---GNKCDL 125
             R     YY     +I V D  D++     K  L  +     E + K ++    NK D+
Sbjct: 60  SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSEL--VAMLEEEELRKAILVVFANKQDM 117
Query: 126 TANKVVSYETAKAFADEIGIP--------FMETSAKSATNVEQAFMAMAASIKN 171
                    T+   A+ +G+P          +TSA   T +++A   +  ++K+
Sbjct: 118 EQAM-----TSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS 166

>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex With Unc119a Length = 189

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
Query: 6   DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTA 65
           D   ++LL+G    GK+ LL + A +    S+I T    F I++V+  G   KL +WD  
Sbjct: 15  DQEVRILLLGLDNAGKTTLLKQLASEDI--SHI-TPTQGFNIKSVQSQG--FKLNVWDIG 69
Query: 66  GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ 101
           GQ + R    SY+     +I V D  D++ F    Q
Sbjct: 70  GQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQ 105

>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound Conformation Length = 181

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 56/121 (46%), Gaps = 12/121 (9%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            ++L++G  G GK+ +L +      + + I TIG  F +  V+     I   +WD  GQ+
Sbjct: 18  MRILMVGLDGAGKTTVLYKLKLGEVITT-IPTIG--FNVECVQY--CNISFTVWDVGGQD 72
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASE----NVNKLLVGNKCD 124
           R R++   YY    G+I V D  D+      ++    + R  +E    N   L+  NK D
Sbjct: 73  RIRSLWRHYYCNTEGVIFVVDSNDRSRIGEARE---VMQRMLNEDELCNAAWLVFANKQD 129
Query: 125 L 125
           L
Sbjct: 130 L 130

>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp Length = 181

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
Query: 6   DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTA 65
           D   ++LL+G    GK+ LL + A +    S+I T    F I++V+  G   KL +WD  
Sbjct: 14  DQEVRILLLGLDNAGKTTLLKQLASEDI--SHI-TPTQGFNIKSVQSQG--FKLNVWDIG 68
Query: 66  GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ 101
           GQ + R    SY+     +I V D  D++ F    Q
Sbjct: 69  GQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQ 104

>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gdp-Alf4 Length = 164

Iteration: 1
 Score = 46.6 bits (109), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 5/92 (5%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           ++LL+G    GK+ LL + A +    S+I T    F I++V+  G   KL +WD  GQ +
Sbjct: 6   RILLLGLDNAGKTTLLKQLASEDI--SHI-TPTQGFNIKSVQSQG--FKLNVWDIGGQRK 60
Query: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ 101
            R    SY+     +I V D  D++ F    Q
Sbjct: 61  IRPYWRSYFENTDILIYVIDSADRKRFEETGQ 92

>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet) Length = 186

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 57/109 (52%), Gaps = 10/109 (9%)
Query: 20  GKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYR 79
           GK+ +L +F  +  +++   T+G  F I+T+E  G   KL IWD  GQ+  R+   +Y+ 
Sbjct: 30  GKTTILKKFNGED-VDTISPTLG--FNIKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFE 84
Query: 80  GAHGIIVVYDVTDQESFNNVKQWLNEI---DRYASENVNKLLVGNKCDL 125
              G+I V D  D++   + ++ L  +   +R A   +  L+  NK DL
Sbjct: 85  STDGLIWVVDSADRQRXQDCQRELQSLLVEERLAGATL--LIFANKQDL 131

>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With Arl1 Length = 171

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 72/172 (41%), Gaps = 19/172 (11%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           ++L++G  G GK+ +L R      + + I TIG  F + TV    K +K Q+WD  G   
Sbjct: 9   RILILGLDGAGKTTILYRLQVGEVVTT-IPTIG--FNVETVTY--KNLKFQVWDLGGLTS 63
Query: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLV-GNKCDLTAN 128
            R     YY     +I V D  D++     K  L             L+V  NK D    
Sbjct: 64  IRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAXLEEEELRKAILVVFANKQDXEQA 123
Query: 129 KVVSYETAKAFADEIGIP--------FMETSAKSATNVEQAFMAMAASIKNR 172
                 T+   A+ +G+P          +TSA   T +++A   +  ++K+R
Sbjct: 124 X-----TSSEXANSLGLPALKDRKWQIFKTSATKGTGLDEAXEWLVETLKSR 170

>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8 Length = 179

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 66/140 (47%), Gaps = 14/140 (10%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           K++++G    GK+ +L +F  +  + +   TIG + +   V    K     +WD  GQE 
Sbjct: 18  KVIIVGLDNAGKTTILYQFLMNEVVHTS-PTIGSNVEEIVV----KNTHFLMWDIGGQES 72
Query: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNK---LLVGNKCD-- 124
            R+  ++YY     II+V D  D+E     K+ L  +   A E++ K   L+  NK D  
Sbjct: 73  LRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRM--LAHEDLRKAAVLIFANKQDMK 130
Query: 125 --LTANKVVSYETAKAFADE 142
             +TA ++  Y T  +  D 
Sbjct: 131 GCMTAAEISKYLTLSSIKDH 150

>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) (Casp Target) Length = 181

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 62/119 (52%), Gaps = 10/119 (8%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           K++++G    GK+ +L +F+ +  + +   TIG + +   +       +  +WD  GQE 
Sbjct: 23  KVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGSNVEEIVI----NNTRFLMWDIGGQES 77
Query: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNK---LLVGNKCDL 125
            R+  ++YY     +IVV D TD+E  +  ++ L ++   A E++ K   L+  NK D+
Sbjct: 78  LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKM--LAHEDLRKAGLLIFANKQDV 134

>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) Length = 183

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 62/119 (52%), Gaps = 10/119 (8%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           K++++G    GK+ +L +F+ +  + +   TIG + +   +       +  +WD  GQE 
Sbjct: 24  KVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGSNVEEIVI----NNTRFLMWDIGGQES 78
Query: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNK---LLVGNKCDL 125
            R+  ++YY     +IVV D TD+E  +  ++ L ++   A E++ K   L+  NK D+
Sbjct: 79  LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKM--LAHEDLRKAGLLIFANKQDV 135

>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp Length = 164

Iteration: 1
 Score = 43.5 bits (101), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 5/92 (5%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           ++LL+G    GK+ LL + A +    S+I T    F I++V+  G   KL +WD  G  +
Sbjct: 6   RILLLGLDNAGKTTLLKQLASEDI--SHI-TPTQGFNIKSVQSQG--FKLNVWDIGGLRK 60
Query: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ 101
            R    SY+     +I V D  D++ F    Q
Sbjct: 61  IRPYWRSYFENTDILIYVIDSADRKRFEETGQ 92

>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces Cerevisiae Length = 183

Iteration: 1
 Score = 43.5 bits (101), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            ++L++G  G GK+ +L R      + +   TIG  F + T+    K +KL +WD  GQ 
Sbjct: 19  LRILILGLDGAGKTTILYRLQIGEVVTTK-PTIG--FNVETLSY--KNLKLNVWDLGGQT 73
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLN 104
             R     YY     +I V D TD++  +   + L+
Sbjct: 74  SIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELH 109

>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 Length = 179

Iteration: 1
 Score = 43.5 bits (101), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 62/119 (52%), Gaps = 10/119 (8%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           K++++G    GK+ +L +F+ +  + +   TIG + +    E      +  +WD  GQE 
Sbjct: 18  KVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGSNVE----EIVINNTRFLMWDIGGQES 72
Query: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNK---LLVGNKCDL 125
            R+  ++YY     +IVV D TD+E  +  ++ L ++   A E++ K   L+  NK D+
Sbjct: 73  LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKM--LAHEDLRKAGLLIFANKQDV 129

>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5 Length = 187

Iteration: 1
 Score = 43.1 bits (100), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 62/119 (52%), Gaps = 10/119 (8%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           K++++G    GK+ +L +F+ +  + +   TIG + +    E      +  +WD  GQE 
Sbjct: 18  KVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGSNVE----EIVINNTRFLMWDIGGQES 72
Query: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNK---LLVGNKCDL 125
            R+  ++YY     +IVV D TD+E  +  ++ L ++   A E++ K   L+  NK D+
Sbjct: 73  LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKM--LAHEDLRKAGLLIFANKQDV 129

>pdb|2IWR|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human) Length = 178

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 77/167 (46%), Gaps = 13/167 (7%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            +L ++GD+  GKS L+ RF   SY +    T    +K + +  DG+T  + I + AG  
Sbjct: 8   LRLGVLGDARSGKSSLIHRFLTGSY-QVLEKTESEQYK-KEMLVDGQTHLVLIREEAG-- 63
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKL---LVGNKCDL 125
                 + +   A  +I V+ + D+ SF  V +   ++     E    L   LVG +  +
Sbjct: 64  ---APDAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRI 120
Query: 126 TAN--KVVSYETAKAF-ADEIGIPFMETSAKSATNVEQAFMAMAASI 169
           +A+  +VV    A+A  AD     + ET A    NV++ F  +A  +
Sbjct: 121 SASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKV 167

>pdb|2BMJ|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human) Length = 178

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 77/167 (46%), Gaps = 13/167 (7%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            +L ++GD+  GKS L+ RF   SY +    T    +K + +  DG+T  + I + AG  
Sbjct: 8   LRLGVLGDARSGKSSLIHRFLTGSY-QVLEKTESEQYK-KEMLVDGQTHLVLIREEAG-- 63
Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKL---LVGNKCDL 125
                 + +   A  +I V+ + D+ SF  V +   ++     E    L   LVG +  +
Sbjct: 64  ---APDAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRI 120
Query: 126 TAN--KVVSYETAKAF-ADEIGIPFMETSAKSATNVEQAFMAMAASI 169
           +A+  +VV    A+A  AD     + ET A    NV++ F  +A  +
Sbjct: 121 SASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKV 167

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	203
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	1e-134
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	1e-132
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	1e-129
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	1e-128
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	1e-127
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	1e-127
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	1e-127
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	1e-127
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	1e-126
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	1e-126
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	1e-125
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	1e-125
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	1e-125
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	1e-124
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	1e-124
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	1e-124
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	1e-124
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	1e-124
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	1e-123
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	1e-123
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	1e-122
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	1e-122
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	1e-122
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	1e-121
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	1e-120
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	1e-120
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	1e-119
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	1e-119
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	1e-119
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	1e-119
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	1e-119
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	1e-119
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	1e-117
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	1e-115
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	1e-114
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	1e-114
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	1e-114
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	1e-113
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	1e-113
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	1e-113
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	1e-112
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	1e-110
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	1e-105
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	1e-103
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	1e-101
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	1e-100
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	4e-99
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	9e-98
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	2e-97
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	1e-96
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	1e-96
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	2e-95
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	4e-94
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	6e-94
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	2e-93
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	2e-93
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	4e-93
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	3e-92
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	2e-91
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	2e-91
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	5e-91
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	3e-90
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	2e-89
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	1e-88
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	1e-85
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	2e-82
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	1e-80
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	5e-80
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	1e-75
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	1e-70
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	1e-60
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	8e-56
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	9e-56
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	6e-55
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	2e-53
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	3e-53
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	2e-51
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	2e-50
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	4e-50
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	1e-49
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	2e-47
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	2e-47
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	3e-46
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	7e-46
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	5e-30
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	1e-26
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	1e-21
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	3e-21
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	3e-21
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	6e-21
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	6e-21
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	2e-20
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	3e-20
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	4e-20
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	2e-19
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	3e-19
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	1e-17
3llu_A	196	RAS-related GTP-binding protein C; structural geno	1e-17
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	5e-17
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	1e-16
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	6e-16
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	1e-15
2ged_A	193	SR-beta, signal recognition particle receptor beta	3e-15
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	3e-15
2fh5_B	214	SR-beta, signal recognition particle receptor beta	8e-15
1nrj_B	218	SR-beta, signal recognition particle receptor beta	1e-14
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	2e-10
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	2e-05
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	2e-04
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	4e-04
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	5e-04
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	5e-04
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	5e-04

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score =  373 bits (959), Expect = e-134
 Identities = 138/205 (67%), Positives = 157/205 (76%), Gaps = 4/205 (1%)

Query: 1   MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ 60
           MN+EYDYLFKLLLIG+SGVGKSCLLLRF+DD+Y   YISTIGVDFKI+TVE DGKT+KLQ
Sbjct: 1   MNSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQ 60

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120
           IWDTAGQERFRTITSSYYRG+HGII+VYDVTDQESFN VK WL EIDRYA+  V KLLVG
Sbjct: 61  IWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVG 120

Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQ---- 176
           NKCDL   +VV Y+ AK FAD   +PF+ETSA  +TNVE AF+ MA  IK  M+ Q    
Sbjct: 121 NKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNE 180

Query: 177 PASNNARPPTVQIRGQPVNQKSGCC 201
                     V ++GQ +    GCC
Sbjct: 181 TTQKKEDKGNVNLKGQSLTNTGGCC 205

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score =  368 bits (947), Expect = e-132
 Identities = 156/188 (82%), Positives = 164/188 (87%)

Query: 1   MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ 60
           MN EYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQ
Sbjct: 9   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 68

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120
           IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWL EIDRYASENVNKLLVG
Sbjct: 69  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG 128

Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASN 180
           NKCDLT  KVV Y TAK FAD +GIPF+ETSAK+ATNVEQ+FM MAA IK RM     + 
Sbjct: 129 NKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAG 188

Query: 181 NARPPTVQ 188
            A    V+
Sbjct: 189 GAEKSNVK 196

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score =  361 bits (929), Expect = e-129
 Identities = 90/201 (44%), Positives = 134/201 (66%), Gaps = 6/201 (2%)

Query: 2   NNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQI 61
           ++ +DY+FK+L+IG+S VGK+  L R+ADDS+  +++ST+G+DFK++T+ ++ K IKLQI
Sbjct: 2   SHMFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQI 61

Query: 62  WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGN 121
           WDTAG ER+RTIT++YYRGA G I++YD+T++ESFN V+ W  +I  Y+ +N   LLVGN
Sbjct: 62  WDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGN 121

Query: 122 KCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRM------AS 175
           KCD+   +VVS E  +  AD +G  F E SAK   NV+Q F  +   I  +M      A 
Sbjct: 122 KCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESLDTAD 181

Query: 176 QPASNNARPPTVQIRGQPVNQ 196
              +   + P +  +  P +Q
Sbjct: 182 PAVTGAKQGPQLTDQQAPPHQ 202

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score =  358 bits (921), Expect = e-128
 Identities = 104/182 (57%), Positives = 140/182 (76%)

Query: 1   MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ 60
           M   YDYLFKLLLIGDSGVGK+C+L RF++D++  ++ISTIG+DFKIRT+E DGK IKLQ
Sbjct: 1   MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQ 60

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120
           IWDTAGQERFRTIT++YYRGA GI++VYD+T+++SF+N++ W+  I+ +AS +V K+++G
Sbjct: 61  IWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILG 120

Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASN 180
           NKCD+   + VS E  +  A + GI FMETSAK+  NVE AF  +A  IK +M     + 
Sbjct: 121 NKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKNWKAT 180

Query: 181 NA 182
            A
Sbjct: 181 AA 182

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score =  356 bits (917), Expect = e-127
 Identities = 154/174 (88%), Positives = 160/174 (91%)

Query: 1   MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ 60
           MN EYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQ
Sbjct: 26  MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 85

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120
           IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWL EIDRYASENVNKLLVG
Sbjct: 86  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG 145

Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMA 174
           NKCDLT  KVV Y TAK FAD +GIPF+ETSAK+ATNVEQ+FM MAA IK RM 
Sbjct: 146 NKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMG 199

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score =  357 bits (918), Expect = e-127
 Identities = 97/202 (48%), Positives = 137/202 (67%), Gaps = 1/202 (0%)

Query: 1   MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ 60
               YD + K+LLIGDSGVGKSCLL+RF +D +  S+I+TIG+DFKI+TV+ +GK +KLQ
Sbjct: 13  NGKSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQ 72

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120
           +WDTAGQERFRTIT++YYRGA GII+VYDVTD+ +F N+KQW   ++ +A++    LLVG
Sbjct: 73  LWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVG 132

Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASN 180
           NK D+   +VV+ +  +A A E+GIPF+E+SAK+  NV + F  +A  I+ ++ S     
Sbjct: 133 NKSDME-TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDSNKLVG 191

Query: 181 NARPPTVQIRGQPVNQKSGCCS 202
                   I     +  S   +
Sbjct: 192 VGNGKEGNISINSGSGNSSKSN 213

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score =  356 bits (915), Expect = e-127
 Identities = 84/174 (48%), Positives = 126/174 (72%)

Query: 1   MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ 60
               +DY+FKLL+IG+S VGK+  L R+ADD++  +++ST+G+DFK++TV +  K +KLQ
Sbjct: 16  FQGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQ 75

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120
           IWDTAGQER+RTIT++YYRGA G I++YD+T++ESFN V+ W  +I  Y+ +N   +LVG
Sbjct: 76  IWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVG 135

Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMA 174
           NKCD+   +VV  E  +  A+++G  F E SAK   +V QAF  +  +I ++M+
Sbjct: 136 NKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMS 189

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score =  354 bits (912), Expect = e-127
 Identities = 107/180 (59%), Positives = 132/180 (73%), Gaps = 1/180 (0%)

Query: 1   MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ 60
           M  +YD+LFKLL+IGDSGVGKS LLLRFAD+++  SYI+TIGVDFKIRTVE +G+ +KLQ
Sbjct: 2   MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQ 61

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120
           IWDTAGQERFRTITS+YYRG HG+IVVYDVT  ESF NVK+WL+EI++   ++V ++LVG
Sbjct: 62  IWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC-DDVCRILVG 120

Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASN 180
           NK D    KVV  E A  FA ++GI   ETSAK   NVE+ F  +   +        A  
Sbjct: 121 NKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDNLAKQ 180

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score =  353 bits (908), Expect = e-126
 Identities = 87/178 (48%), Positives = 127/178 (71%), Gaps = 1/178 (0%)

Query: 1   MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSY-LESYISTIGVDFKIRTVEQDGKTIKL 59
             + YD  FK++L+GDSGVGK+CLL+RF D ++   ++IST+G+DF+ + ++ DG  +KL
Sbjct: 3   GVDFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKL 62

Query: 60  QIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLV 119
           Q+WDTAGQERFR++T +YYR AH ++++YDVT++ SF+N++ WL EI  YA  +V  +L+
Sbjct: 63  QMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLL 122

Query: 120 GNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQP 177
           GNK D    +VV  E  +  A E G+PFMETSAK+  NV+ AF A+A  +K R    P
Sbjct: 123 GNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKRRSMKAP 180

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score =  354 bits (910), Expect = e-126
 Identities = 86/180 (47%), Positives = 125/180 (69%)

Query: 3   NEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIW 62
            +YD+LFK++LIG++GVGK+CL+ RF    +     +TIGVDF I+TVE +G+ +KLQIW
Sbjct: 21  EDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIW 80

Query: 63  DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNK 122
           DTAGQERFR+IT SYYR A+ +I+ YD+T +ESF  + +WL EI++YAS  V  +LVGNK
Sbjct: 81  DTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNK 140

Query: 123 CDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNA 182
            DL   + VS + A+ F++   + ++ETSAK + NVE+ F+ +A  + +        NN 
Sbjct: 141 IDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEARQNTLVNNV 200

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score =  350 bits (900), Expect = e-125
 Identities = 87/173 (50%), Positives = 121/173 (69%)

Query: 1   MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ 60
           +    DY+FKLLLIG+S VGK+  L R+ADDS+  +++ST+G+DFK++TV +  K IKLQ
Sbjct: 15  VPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQ 74

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120
           IWDTAGQER+RTIT++YYRGA G +++YD+ +QESF  V+ W  +I  Y+ +N   +LVG
Sbjct: 75  IWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVG 134

Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRM 173
           NKCDL   +VV  E  +  AD++G  F E SAK   NV+Q F  +   I  +M
Sbjct: 135 NKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKM 187

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score =  349 bits (899), Expect = e-125
 Identities = 77/175 (44%), Positives = 117/175 (66%)

Query: 2   NNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQI 61
           + +Y+++FK++LIG+SGVGK+ LL RF  + +     +TIGV+F  RTV      +K QI
Sbjct: 19  SEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQI 78

Query: 62  WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGN 121
           WDTAG ER+R ITS+YYRGA G ++V+D+T  +++  V++WL E+  +A   +  +LVGN
Sbjct: 79  WDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGN 138

Query: 122 KCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQ 176
           K DL+  + V  E A+ FA+  G+ F+ETSA  +TNVE AF  +   I  +++ Q
Sbjct: 139 KSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 193

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score =  350 bits (899), Expect = e-125
 Identities = 86/180 (47%), Positives = 125/180 (69%), Gaps = 1/180 (0%)

Query: 1   MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ 60
            + +YD+LFKL+L+GD+ VGK+C++ RF   ++ E   STIGVDF ++T+E  GK +KLQ
Sbjct: 22  PDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQ 81

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120
           IWDTAGQERFRTIT SYYR A+G I+ YD+T + SF +V  W+ ++ +YA  N+ +LL+G
Sbjct: 82  IWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIG 141

Query: 121 NKCDLTANKVVSYETAKAFADEIGI-PFMETSAKSATNVEQAFMAMAASIKNRMASQPAS 179
           NK DL+  + VS   A++ A+   I   +ETSAK ++NVE+AF+ +A  +  R      S
Sbjct: 142 NKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRHGGPLFS 201

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score =  350 bits (899), Expect = e-124
 Identities = 91/217 (41%), Positives = 127/217 (58%), Gaps = 17/217 (7%)

Query: 2   NNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQI 61
             +YD LFK++LIGDSGVGKS LL RF  + +     STIGV+F  RT+E +GK IK QI
Sbjct: 7   GYDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQI 66

Query: 62  WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGN 121
           WDTAGQER+R ITS+YYRGA G ++VYD++   S+ N   WL+E+   A +NV   L+GN
Sbjct: 67  WDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGN 126

Query: 122 KCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQP---- 177
           K DL   + V  E +K FA E  + F ETSA ++ NV++AF  +  +I  +++       
Sbjct: 127 KSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQMDLG 186

Query: 178 ---------ASNNARPPTVQIRGQPVNQK----SGCC 201
                     ++    PT+ +   P   K    + CC
Sbjct: 187 DSSANGNANGASAPNGPTISLTPTPNENKKANGNNCC 223

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score =  347 bits (893), Expect = e-124
 Identities = 90/175 (51%), Positives = 122/175 (69%)

Query: 1   MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ 60
           +     YLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R V  DGK IKLQ
Sbjct: 14  LVPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQ 73

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120
           IWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL +  +++S N+  +L+G
Sbjct: 74  IWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIG 133

Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMAS 175
           NK DL + + V  E  +AFA E G+ FMETSAK+A NVE+AF+  A  I  ++  
Sbjct: 134 NKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQ 188

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score =  347 bits (893), Expect = e-124
 Identities = 83/174 (47%), Positives = 122/174 (70%), Gaps = 1/174 (0%)

Query: 1   MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ 60
                D+  ++++IG  GVGK+ L+ RF DD++ E+  ST+GVDFKI+TVE  GK I+LQ
Sbjct: 19  SPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQ 78

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120
           IWDTAGQERF +ITS+YYR A GII+VYD+T +E+F+++ +W+  ID+YASE+   LLVG
Sbjct: 79  IWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVG 138

Query: 121 NKCDLTANKVVSYETAKAFADEI-GIPFMETSAKSATNVEQAFMAMAASIKNRM 173
           NK D   ++ ++ +  + FA +I G+ F E SAK   NV++ F+ +   I  +M
Sbjct: 139 NKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKM 192

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score =  347 bits (893), Expect = e-124
 Identities = 83/176 (47%), Positives = 120/176 (68%)

Query: 1   MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ 60
           M+  YD+LFK L+IG++G GKSCLL +F +  + +    TIGV+F  + +   GK +KLQ
Sbjct: 3   MSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQ 62

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120
           IWDTAGQERFR++T SYYRGA G ++VYD+T +E++N +  WL +    AS+N+  +L G
Sbjct: 63  IWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCG 122

Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQ 176
           NK DL A++ V++  A  FA E  + F+ETSA +  NVE+AF+  A  I N++ S 
Sbjct: 123 NKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESG 178

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score =  347 bits (892), Expect = e-124
 Identities = 88/169 (52%), Positives = 120/169 (71%)

Query: 1   MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ 60
            ++EYDYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  R+++ DGKTIK Q
Sbjct: 22  RDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQ 81

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120
           IWDTAG ER+R ITS+YYRGA G ++VYD+    ++ NV++WL E+  +A  N+  +LVG
Sbjct: 82  IWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVG 141

Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
           NK DL   + V  + A+AFA++ G+ F+ETSA  +TNVE AF  +   I
Sbjct: 142 NKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score =  345 bits (888), Expect = e-123
 Identities = 88/178 (49%), Positives = 124/178 (69%)

Query: 5   YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDT 64
           YDYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  R+++ DGKTIK QIWDT
Sbjct: 2   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 61

Query: 65  AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCD 124
           AGQER+R ITS+YYRGA G ++VYD+    ++ NV++WL E+  +A  N+  +LVGNK D
Sbjct: 62  AGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 121

Query: 125 LTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNA 182
           L   + V  + A+AFA++  + F+ETSA  +TNVE+AF  +   I   ++ +  ++ A
Sbjct: 122 LRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRA 179

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score =  345 bits (887), Expect = e-123
 Identities = 72/199 (36%), Positives = 114/199 (57%)

Query: 3   NEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIW 62
                 FKL+ +G+  VGK+ L+ RF  DS+  +Y +TIG+DF  +T+  + +T++LQ+W
Sbjct: 11  GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 70

Query: 63  DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNK 122
           DTAG ERFR++  SY R +   +VVYD+T+  SF    +W++++      +V  +LVGNK
Sbjct: 71  DTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNK 130

Query: 123 CDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNA 182
            DL   + VS E  +  A E+ + F+ETSAK+  NV+Q F  +AA++    ++Q  S   
Sbjct: 131 TDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSRED 190

Query: 183 RPPTVQIRGQPVNQKSGCC 201
                  + Q      G C
Sbjct: 191 MIDIKLEKPQEQPVSEGGC 209

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score =  343 bits (882), Expect = e-122
 Identities = 83/174 (47%), Positives = 117/174 (67%)

Query: 4   EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWD 63
             D+LFK L+IG +G GKSCLL +F ++ + +    TIGV+F  R V   GKT+KLQIWD
Sbjct: 21  WSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWD 80

Query: 64  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKC 123
           TAGQERFR++T SYYRGA G ++VYD+T +E++N++  WL +    AS N+  +L GNK 
Sbjct: 81  TAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKK 140

Query: 124 DLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQP 177
           DL   + V++  A  FA E  + F+ETSA +  NVE+AF+  A +I N++ S  
Sbjct: 141 DLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIDSGE 194

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score =  342 bits (879), Expect = e-122
 Identities = 84/187 (44%), Positives = 116/187 (62%), Gaps = 2/187 (1%)

Query: 1   MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ 60
           M+ +     K+L+IG+SGVGKS LLLRF DD++     +TIGVDFK++T+  DG   KL 
Sbjct: 8   MDEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLA 67

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASEN-VNKLLV 119
           IWDTAGQERFRT+T SYYRGA G+I+VYDVT +++F  +  WLNE++ Y + N +  +LV
Sbjct: 68  IWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLV 127

Query: 120 GNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPAS 179
           GNK D   N+ V       FA +  + F+E SAK+   V+ AF  +   I        + 
Sbjct: 128 GNKIDKE-NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESE 186

Query: 180 NNARPPT 186
           N    P+
Sbjct: 187 NQNSGPS 193

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score =  342 bits (879), Expect = e-122
 Identities = 70/206 (33%), Positives = 110/206 (53%), Gaps = 4/206 (1%)

Query: 1   MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ 60
           M +    L K++++GDSGVGK+ L+ ++ +  +   Y +TIG DF  + V  D + + +Q
Sbjct: 1   MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYAS----ENVNK 116
           IWDTAGQERF+++  ++YRGA   ++V+DVT   +F  +  W +E    AS    EN   
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 120

Query: 117 LLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQ 176
           +++GNK DL   +V +         +  IP+ ETSAK A NVEQAF  +A +   +    
Sbjct: 121 VVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEV 180

Query: 177 PASNNARPPTVQIRGQPVNQKSGCCS 202
              N    P    + +     +  CS
Sbjct: 181 ELYNEFPEPIKLDKNERAKASAESCS 206

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score =  338 bits (869), Expect = e-121
 Identities = 94/170 (55%), Positives = 132/170 (77%), Gaps = 1/170 (0%)

Query: 6   DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTA 65
           D + K+LLIGDSGVGKSCLL+RF +D +  S+I+TIG+DFKI+TV+ +GK +KLQIWDTA
Sbjct: 1   DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60

Query: 66  GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL 125
           GQERFRTIT++YYRGA GII+VYD+TD+ +F N+KQW   ++ +A++    LLVGNK D+
Sbjct: 61  GQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM 120

Query: 126 TANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMAS 175
              +VV+ +  +A A E+GIPF+E+SAK+  NV + F  +A  I+ ++ S
Sbjct: 121 E-TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDS 169

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score =  338 bits (869), Expect = e-120
 Identities = 83/170 (48%), Positives = 113/170 (66%)

Query: 1   MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ 60
               Y Y+FK ++IGD GVGKSCLL +F +  ++     TIGV+F  R +E  G+ IKLQ
Sbjct: 8   APYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQ 67

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120
           IWDTAGQERFR +T SYYRGA G ++VYD+T + ++N++  WL +     + N   +L+G
Sbjct: 68  IWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIG 127

Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIK 170
           NK DL A + V+YE AK FA+E G+ F+E SAK+  NVE AF+  A  I 
Sbjct: 128 NKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIY 177

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score =  336 bits (865), Expect = e-120
 Identities = 70/177 (39%), Positives = 110/177 (62%), Gaps = 6/177 (3%)

Query: 2   NNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQI 61
           +      +K++L GD+ VGKS  L+R   + + E+  +T+GVDF+++T+  DG+   LQ+
Sbjct: 22  SFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQL 81

Query: 62  WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGN 121
           WDTAGQERFR+I  SY+R A G++++YDVT ++SF N+++W++ I+  A E V  +LVGN
Sbjct: 82  WDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGN 141

Query: 122 KCDL------TANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
           K D+         K V     +  A   G  F ETSAK  +N+ +A + +A  +K R
Sbjct: 142 KADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVKKR 198

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score =  335 bits (861), Expect = e-119
 Identities = 55/168 (32%), Positives = 91/168 (54%), Gaps = 1/168 (0%)

Query: 5   YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDT 64
            +   K++++G+  VGKS ++ R+    + + Y  TIGVDF  R ++ + + ++L +WDT
Sbjct: 2   SEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDT 61

Query: 65  AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCD 124
           AGQE F  IT +YYRGA   ++V+  TD+ESF  +  W  ++      ++   LV NK D
Sbjct: 62  AGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-DIPTALVQNKID 120

Query: 125 LTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
           L  +  +  E A+  A  + + F  TS K   NV + F  +A     +
Sbjct: 121 LLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQK 168

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score =  334 bits (859), Expect = e-119
 Identities = 61/166 (36%), Positives = 102/166 (61%)

Query: 5   YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDT 64
             Y FK++L+G+  VGK+ L+LR+ ++ + + +I+T+G  F  + +   GK + L IWDT
Sbjct: 3   RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDT 62

Query: 65  AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCD 124
           AGQERF  +   YYR ++G I+VYD+TD++SF  VK W+ E+ +     +   +VGNK D
Sbjct: 63  AGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKID 122

Query: 125 LTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIK 170
           L   + VS + A+++A+ +G     TSAK    +E+ F+ +   + 
Sbjct: 123 LEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMI 168

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score =  336 bits (863), Expect = e-119
 Identities = 78/198 (39%), Positives = 123/198 (62%), Gaps = 12/198 (6%)

Query: 2   NNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGK------ 55
           + +YDYL KLL +GDSGVGK+  L R+ D+ +   +I+T+G+DF+ + V  + +      
Sbjct: 19  SGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSS 78

Query: 56  ----TIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA- 110
                + LQ+WDTAGQERFR++T++++R A G ++++D+T Q+SF NV+ W++++   A 
Sbjct: 79  GKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAY 138

Query: 111 SENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIK 170
            EN + +L+GNK DL   + V+   A+  AD+ GIP+ ETSA +  NVE+A   +   I 
Sbjct: 139 CENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIM 198

Query: 171 NRMASQPASNNARPPTVQ 188
            RM  Q       P TV 
Sbjct: 199 KRM-EQCVEKTQIPDTVN 215

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score =  334 bits (859), Expect = e-119
 Identities = 74/175 (42%), Positives = 111/175 (63%), Gaps = 5/175 (2%)

Query: 2   NNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQI 61
                 +FK+++IGDS VGK+CL  RF    + +   +TIGVDF+ R V+ DG+ IK+Q+
Sbjct: 14  RGSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQL 73

Query: 62  WDTAGQERFR-TITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASEN-VNKLLV 119
           WDTAGQERFR ++   YYR  H ++ VYD+T+  SF+++  W+ E  ++   N + ++LV
Sbjct: 74  WDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILV 133

Query: 120 GNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSA---TNVEQAFMAMAASIKN 171
           GNKCDL +   V  + A+ FAD   +P  ETSAK+     +VE  FM +A  +K+
Sbjct: 134 GNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLKS 188

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score =  334 bits (858), Expect = e-119
 Identities = 74/174 (42%), Positives = 107/174 (61%)

Query: 3   NEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIW 62
                  KL+L+GD G GKS L+LRF  D ++E   STIG  F  +T+  +  T+K +IW
Sbjct: 7   GNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIW 66

Query: 63  DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNK 122
           DTAGQER+ ++   YYRGA   I+V+DVT+Q SF   K+W+ E+    + N+   L GNK
Sbjct: 67  DTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNK 126

Query: 123 CDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQ 176
            DL   + V+ E A+ +A E G+ FMETSAK+ATNV++ F  +A  +     ++
Sbjct: 127 SDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRVQPTE 180

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score =  334 bits (858), Expect = e-119
 Identities = 72/190 (37%), Positives = 119/190 (62%), Gaps = 11/190 (5%)

Query: 2   NNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQD-------- 53
           + +YDYL K L +GDSGVGK+ +L ++ D  +   +I+T+G+DF+ + V           
Sbjct: 5   DGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAV 64

Query: 54  --GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA- 110
             G+ I LQ+WDTAG ERFR++T++++R A G ++++D+T+++SF NV+ W++++  +A 
Sbjct: 65  GRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAY 124

Query: 111 SENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIK 170
           SEN + +L GNK DL   + V  E A+  A++ GIP+ ETSA + TN+  A   +   I 
Sbjct: 125 SENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIM 184

Query: 171 NRMASQPASN 180
            RM      +
Sbjct: 185 KRMERSVDKS 194

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score =  332 bits (853), Expect = e-117
 Identities = 54/197 (27%), Positives = 89/197 (45%), Gaps = 2/197 (1%)

Query: 3   NEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGV-DFKIRTVEQDGKTIKLQI 61
              +  +K+ LIGD GVGK+  + R  D  + ++Y +T+G  +  +  ++  G  IK  +
Sbjct: 6   ERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNV 65

Query: 62  WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGN 121
           WDTAGQE+   +   YY GA G I+ +DVT + +  N+ +W+ E           ++  N
Sbjct: 66  WDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCAN 125

Query: 122 KCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASN- 180
           K D+   + +S +            + E SAK+A N    F+ +A     R      SN 
Sbjct: 126 KIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRPDLIFVSNV 185

Query: 181 NARPPTVQIRGQPVNQK 197
           N  P  V        + 
Sbjct: 186 NLEPTEVNYDYHSPEES 202

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score =  326 bits (837), Expect = e-115
 Identities = 67/175 (38%), Positives = 102/175 (58%)

Query: 2   NNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQI 61
                   K+ L+GD+GVGKS ++ RF  D +  +   TIG  F  +TV    +  K  I
Sbjct: 17  RGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLI 76

Query: 62  WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGN 121
           WDTAGQERF ++   YYRG+   ++VYD+T Q+SF  +K+W+ E+  +  EN+   + GN
Sbjct: 77  WDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGN 136

Query: 122 KCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQ 176
           KCDL+  + V  + AK +A+ IG   +ETSAK+A N+E+ F  ++  I      +
Sbjct: 137 KCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPPLDPHE 191

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score =  322 bits (829), Expect = e-114
 Identities = 68/167 (40%), Positives = 109/167 (65%)

Query: 3   NEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIW 62
                 FKL+ +G+  VGK+ L+ RF  DS+  +Y +TIG+DF  +T+  + +T++LQ+W
Sbjct: 9   GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 68

Query: 63  DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNK 122
           DTAGQERFR++  SY R +   +VVYD+T+  SF+   +W++++      +V  +LVGNK
Sbjct: 69  DTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNK 128

Query: 123 CDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
            DL+  + VS E  +  A E+ + F+ETSAK+  NV+Q F  +AA++
Sbjct: 129 TDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 175

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score =  322 bits (828), Expect = e-114
 Identities = 67/162 (41%), Positives = 102/162 (62%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K+ L+GD+GVGKS ++ RF +DS+  +   TIG  F  +TV+   +  K  IWDTAG E
Sbjct: 7   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66

Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
           RFR +   YYRG+   I+VYD+T +E+F+ +K W+ E+ ++   ++   + GNKCDLT  
Sbjct: 67  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 126

Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIK 170
           + V    AK +AD I   F+ETSAK+A N+ + F+ ++  I 
Sbjct: 127 REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIP 168

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score =  321 bits (826), Expect = e-114
 Identities = 78/164 (47%), Positives = 108/164 (65%)

Query: 7   YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG 66
             FKL+L+G+S VGKS L+LRF    + E   STIG  F  +TV  D  T+K +IWDTAG
Sbjct: 5   CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAG 64

Query: 67  QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLT 126
           QER+ ++   YYRGA   IVVYD+T++ESF   K W+ E+ R AS N+   L GNK DL 
Sbjct: 65  QERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLA 124

Query: 127 ANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIK 170
             + V ++ A+++AD+  + FMETSAK++ NV + FMA+A  + 
Sbjct: 125 NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 168

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score =  319 bits (820), Expect = e-113
 Identities = 68/175 (38%), Positives = 102/175 (58%), Gaps = 6/175 (3%)

Query: 4   EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWD 63
               LFK++L+GD GVGKS L+ R+  + +      TIGV+F  + +E DG  + +QIWD
Sbjct: 3   GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWD 62

Query: 64  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYAS----ENVNKLLV 119
           TAGQERFR++ + +YRG+   ++ + V D +SF N+  W  E   YA     E+   +++
Sbjct: 63  TAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVIL 122

Query: 120 GNKCDLTANKVVSYETAKAFADEIG-IPFMETSAKSATNVEQAFMAMAASIKNRM 173
           GNK D++  + VS E A+A+  + G  P+ ETSAK ATNV  AF      +    
Sbjct: 123 GNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLATE 176

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score =  319 bits (820), Expect = e-113
 Identities = 73/182 (40%), Positives = 115/182 (63%), Gaps = 7/182 (3%)

Query: 1   MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDG-KTIKL 59
           M++    + K++++GDSGVGK+ L+ R+ +D Y + Y +TIG DF  + V  DG K   +
Sbjct: 1   MSSRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATM 60

Query: 60  QIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYAS----ENVN 115
           Q+WDTAGQERF+++  ++YRGA   ++VYDVT+  SF N+K W +E   +A+    E   
Sbjct: 61  QVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFP 120

Query: 116 KLLVGNKCDL-TANKVVSYETAKAFADEIG-IPFMETSAKSATNVEQAFMAMAASIKNRM 173
            +++GNK D   + K+VS ++A+  A  +G IP   TSAK+A NV+ AF  +A S   + 
Sbjct: 121 FVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQN 180

Query: 174 AS 175
            +
Sbjct: 181 QA 182

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score =  319 bits (819), Expect = e-113
 Identities = 54/176 (30%), Positives = 87/176 (49%), Gaps = 4/176 (2%)

Query: 5   YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGK-TIKLQIWD 63
           +    K++++GD   GK+ L   FA +++ + Y  TIG+DF +R +   G   + LQIWD
Sbjct: 3   HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWD 62

Query: 64  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRY---ASENVNKLLVG 120
             GQ     +   Y  GA G+++VYD+T+ +SF N++ W   + +    +       LVG
Sbjct: 63  IGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVG 122

Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQ 176
           NK DL   + +  E    F  E G      SAK+  +V   F  +AA I     ++
Sbjct: 123 NKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGIKLNK 178

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score =  318 bits (816), Expect = e-112
 Identities = 59/198 (29%), Positives = 96/198 (48%), Gaps = 4/198 (2%)

Query: 1   MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ 60
              E    FKL+L+GD G GK+  + R     + + Y++T+GV+        +   IK  
Sbjct: 8   AQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFN 67

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120
           +WDTAGQE+F  +   YY  A   I+++DVT + ++ NV  W  ++ R   EN+  +L G
Sbjct: 68  VWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCG 126

Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASN 180
           NK D+   KV     +  F  +  + + + SAKS  N E+ F+ +A  +      +  + 
Sbjct: 127 NKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAM 184

Query: 181 NA-RPPTVQIRGQPVNQK 197
            A  PP V +      Q 
Sbjct: 185 PALAPPEVVMDPALAAQY 202

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score =  313 bits (803), Expect = e-110
 Identities = 46/190 (24%), Positives = 89/190 (46%), Gaps = 9/190 (4%)

Query: 1   MNNEYDYLFKLLLIGDSGVGKSCLLLRFAD--DSYLESYISTIGVDFKIRTVEQDGKTIK 58
           ++       K+ ++G++ VGKS L+  F      +L+ Y  T GV+  +  V     T+ 
Sbjct: 13  IDITATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVS 72

Query: 59  LQIW--DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRY---ASEN 113
           ++++  DTAG + ++   S Y+ G +  I+V+DV+  ESF + K W   +          
Sbjct: 73  VELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERP 132

Query: 114 VNKLLVGNKCDLTANK-VVSYETAKAFADEIGIPFMETSAK-SATNVEQAFMAMAASIKN 171
           +  +LV NK DL   +  V  + A+ +A    + F + SA     + +  F+++A +   
Sbjct: 133 LRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYR 192

Query: 172 RMASQPASNN 181
               + A+  
Sbjct: 193 NYEDKVAAFQ 202

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score =  299 bits (769), Expect = e-105
 Identities = 47/179 (26%), Positives = 79/179 (44%), Gaps = 2/179 (1%)

Query: 2   NNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQI 61
             + D +FK++L+G+SGVGKS L   F       ++      D   R +  D + + L +
Sbjct: 17  QGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVV 76

Query: 62  WDTAGQERFR-TITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDR-YASENVNKLLV 119
           +D   Q      +     +     ++V+ VTD+ SF+ V + L  +       ++  +LV
Sbjct: 77  YDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILV 136

Query: 120 GNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPA 178
           GNK DL  ++ VS E  +  A  +    +ETSA    N  + F      I+ R     A
Sbjct: 137 GNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLRRGRNHA 195

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score =  295 bits (758), Expect = e-103
 Identities = 66/201 (32%), Positives = 103/201 (51%), Gaps = 5/201 (2%)

Query: 2   NNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQI 61
                 L K++++G  GVGKS L L+F  D ++E Y  T    ++ + V  DG+ +++ I
Sbjct: 8   GQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDI 66

Query: 62  WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRY-ASENVNKLLVG 120
            DTAGQE +  I  +Y+R   G + V+ +T+ ESF     +  +I R    ENV  LLVG
Sbjct: 67  LDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVG 126

Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASN 180
           NK DL   + VS E AK  A++  + ++ETSAK+  NV++ F  +   I+ R        
Sbjct: 127 NKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKMEDSKEK 186

Query: 181 NARPPTVQIRGQPVNQKSGCC 201
           N +      +      +  CC
Sbjct: 187 NGKKKR---KSLAKRIRERCC 204

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score =  290 bits (744), Expect = e-101
 Identities = 60/181 (33%), Positives = 92/181 (50%), Gaps = 3/181 (1%)

Query: 1   MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ 60
           M+       KL+++G  GVGKS L ++F    ++  Y  TI  D   +    DG   +L 
Sbjct: 2   MDPPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE-DSYTKICSVDGIPARLD 60

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRY-ASENVNKLLV 119
           I DTAGQE F  +   Y R  HG ++V+ + D++SFN V +   +I R    ++   +LV
Sbjct: 61  ILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLV 120

Query: 120 GNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI-KNRMASQPA 178
           GNK DL + + V    A AF     + + E SAK   NV++AF  +  ++ K +    P 
Sbjct: 121 GNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQEQELPP 180

Query: 179 S 179
           S
Sbjct: 181 S 181

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score =  287 bits (736), Expect = e-100
 Identities = 45/167 (26%), Positives = 76/167 (45%), Gaps = 2/167 (1%)

Query: 8   LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
           +FK++L+G+SGVGKS L   F       ++      D   R +  D + + L ++D   Q
Sbjct: 2   VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQ 61

Query: 68  ERFR-TITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDR-YASENVNKLLVGNKCDL 125
                 +     +     ++V+ VTD+ SF+ V + L  +       ++  +LVGNK DL
Sbjct: 62  GDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDL 121

Query: 126 TANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
             ++ VS E  +  A  +    +ETSA    N  + F      I+ R
Sbjct: 122 ARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLR 168

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score =  284 bits (728), Expect = 4e-99
 Identities = 63/176 (35%), Positives = 98/176 (55%), Gaps = 2/176 (1%)

Query: 2   NNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQI 61
           +     L K++++G  GVGKS L L+F  D ++E Y  T    ++ + V  DG+ +++ I
Sbjct: 12  SQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDI 70

Query: 62  WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRY-ASENVNKLLVG 120
            DTAGQE +  I  +Y+R   G + V+ +T+ ESF     +  +I R    ENV  LLVG
Sbjct: 71  LDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVG 130

Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQ 176
           NK DL   + VS E AK  A++  + ++ETSAK+  NV++ F  +   I+ R    
Sbjct: 131 NKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKMED 186

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score =  281 bits (720), Expect = 9e-98
 Identities = 58/202 (28%), Positives = 93/202 (46%), Gaps = 9/202 (4%)

Query: 3   NEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIW 62
            E    +++++ G  GVGKS L+LRF   ++ ++YI TI   ++ + +  D     LQI 
Sbjct: 3   PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQIT 61

Query: 63  DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRY--ASENVNKLLVG 120
           DT G  +F  +        H  I+V+ VT ++S   +      I +   + E++  +LVG
Sbjct: 62  DTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVG 121

Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASN 180
           NKCD T  + V    A+A A E    FMETSAK   NV++ F  +      R  S     
Sbjct: 122 NKCDET-QREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLETRRNMSLNIDG 180

Query: 181 NARPPTVQIRGQPVNQKSGCCS 202
                      +  ++  G C+
Sbjct: 181 KRSGKQ-----KRTDRVKGKCT 197

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score =  280 bits (719), Expect = 2e-97
 Identities = 61/209 (29%), Positives = 96/209 (45%), Gaps = 40/209 (19%)

Query: 4   EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIK----- 58
           E    +K +L+G+S VGKS ++LR   D++ E+  +TIG  F    V  +   IK     
Sbjct: 3   EKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNN 62

Query: 59  --------------------------------LQIWDTAGQERFRTITSSYYRGAHGIIV 86
                                             IWDTAGQER+ +I   YYRGA   IV
Sbjct: 63  EKNNNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIV 122

Query: 87  VYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIP 146
           V+D+++  + +  K W+N++    S N   +LV NK D      V     + +A +  + 
Sbjct: 123 VFDISNSNTLDRAKTWVNQLK--ISSNYIIILVANKIDK-NKFQVDILEVQKYAQDNNLL 179

Query: 147 FMETSAKSATNVEQAFMAMAASIKNRMAS 175
           F++TSAK+ TN++  F  +A  I   + +
Sbjct: 180 FIQTSAKTGTNIKNIFYMLAEEIYKNIIN 208

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score =  277 bits (711), Expect = 1e-96
 Identities = 64/166 (38%), Positives = 97/166 (58%), Gaps = 2/166 (1%)

Query: 8   LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
           L K++++G  GVGKS L L+F  D ++E Y  T    ++ + V  DG+ +++ I DTAGQ
Sbjct: 4   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQ 62

Query: 68  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRY-ASENVNKLLVGNKCDLT 126
           E +  I  +Y+R   G + V+ +T+ ESF     +  +I R    ENV  LLVGNK DL 
Sbjct: 63  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 122

Query: 127 ANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
             + VS E AK  AD+  + ++ETSAK+  NV++ F  +   I+ R
Sbjct: 123 DKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRAR 168

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score =  277 bits (711), Expect = 1e-96
 Identities = 60/174 (34%), Positives = 95/174 (54%), Gaps = 3/174 (1%)

Query: 1   MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ 60
           + +E    +KL+++GD GVGKS L ++F    +++ Y  TI  D  ++  E D +   L 
Sbjct: 11  VPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIE-DSYLKHTEIDNQWAILD 69

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLV 119
           + DTAGQE F  +   Y R   G ++VY VTD+ SF +V ++   I R    E+   +LV
Sbjct: 70  VLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILV 129

Query: 120 GNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSAT-NVEQAFMAMAASIKNR 172
            NK DL   + V+ +  K  A +  IP++ETSAK    NV++ F  +   I+ +
Sbjct: 130 ANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQ 183

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score =  274 bits (703), Expect = 2e-95
 Identities = 51/179 (28%), Positives = 86/179 (48%), Gaps = 2/179 (1%)

Query: 5   YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDT 64
                K+ ++G   VGKS L ++F +  +++SY  TI   F  + +  +G+   LQ+ DT
Sbjct: 3   QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEYHLQLVDT 61

Query: 65  AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDR-YASENVNKLLVGNKC 123
           AGQ+ +     +Y    +G I+VY VT  +SF  +K    ++        +  +LVGNK 
Sbjct: 62  AGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKK 121

Query: 124 DLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNA 182
           DL   +V+SYE  KA A+     F+E+SAK        F  +    +    +     ++
Sbjct: 122 DLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEKMDGACSQGKSS 180

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score =  270 bits (694), Expect = 4e-94
 Identities = 56/169 (33%), Positives = 86/169 (50%), Gaps = 3/169 (1%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +++ + G  GVGKS L+LRF   ++ ESYI T+   ++ + +  D     LQI DT G  
Sbjct: 4   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSH 62

Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA--SENVNKLLVGNKCDLT 126
           +F  +        H  I+VY +T ++S   +K    +I       E++  +LVGNKCD +
Sbjct: 63  QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 122

Query: 127 ANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMAS 175
            ++ V    A+A A      FMETSAK   NV++ F  +    K R  S
Sbjct: 123 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKRRTVS 171

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score =  271 bits (695), Expect = 6e-94
 Identities = 47/174 (27%), Positives = 78/174 (44%), Gaps = 2/174 (1%)

Query: 5   YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDT 64
                K++++G   VGK+ L  +F +  + E Y  T+   +  + V        L + DT
Sbjct: 21  LVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYS-KIVTLGKDEFHLHLVDT 79

Query: 65  AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDR-YASENVNKLLVGNKC 123
           AGQ+ +  +  S+  G HG ++VY VT   SF  ++    ++   +    V  +LVGNK 
Sbjct: 80  AGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKA 139

Query: 124 DLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQP 177
           DL+  + V     K  A+  G  FME+SA+     +  F  +   I     S  
Sbjct: 140 DLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIARVENSYG 193

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score =  268 bits (688), Expect = 2e-93
 Identities = 49/166 (29%), Positives = 79/166 (47%), Gaps = 3/166 (1%)

Query: 8   LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
           ++K+LL+G  GVGKS L   F             G  +  R++  DG+   L ++D   Q
Sbjct: 2   VYKVLLLGAPGVGKSALARIFGGV-EDGPEAEAAGHTYD-RSIVVDGEEASLMVYDIWEQ 59

Query: 68  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRY-ASENVNKLLVGNKCDLT 126
           +  R +           ++VY VTD+ SF    +   ++ R   +++V  +LVGNK DL 
Sbjct: 60  DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV 119

Query: 127 ANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
            ++ VS +  +A A      F+ETSA    NV+  F  +   I+ R
Sbjct: 120 RSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLR 165

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score =  268 bits (688), Expect = 2e-93
 Identities = 63/163 (38%), Positives = 97/163 (59%), Gaps = 2/163 (1%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +K++++G  GVGKS L ++F   +++E Y  TI  DF  + +E D     L+I DTAG E
Sbjct: 4   YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTE 62

Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRY-ASENVNKLLVGNKCDLTA 127
           +F ++   Y +   G I+VY + +Q+SF ++K   ++I R    E V  +LVGNK DL +
Sbjct: 63  QFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLES 122

Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIK 170
            + VS    +A A+E G PFMETSAKS T V++ F  +   + 
Sbjct: 123 EREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMN 165

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score =  269 bits (689), Expect = 4e-93
 Identities = 60/195 (30%), Positives = 98/195 (50%), Gaps = 13/195 (6%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V  DG+T  L I DTAGQE
Sbjct: 5   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63

Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
            +  +   Y R   G + V+ + + +SF ++  +  +I R   SE+V  +LVGNKCDL  
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP- 122

Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTV 187
           ++ V  + A+  A   GIPF+ETSAK+   V+ AF  +   I+            +    
Sbjct: 123 SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHKEKMSKDGKKKKK-- 180

Query: 188 QIRGQPVNQKSGCCS 202
                   +    C 
Sbjct: 181 --------KSKTKCV 187

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score =  266 bits (682), Expect = 3e-92
 Identities = 52/172 (30%), Positives = 86/172 (50%), Gaps = 4/172 (2%)

Query: 8   LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
           L++++L+GD GVGK+ L   FA     + +   +G D   RT+  DG+   L + DT   
Sbjct: 4   LYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVVVDTWEA 62

Query: 68  ERFRTITS--SYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDR-YASENVNKLLVGNKCD 124
           E+     S  S  +G    ++VY + D+ SF +  +   ++ R + +++V  +LVGNK D
Sbjct: 63  EKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKAD 122

Query: 125 LTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQ 176
           L   + VS E  +A A      F+ETSA    NV + F  +   ++ R    
Sbjct: 123 LARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVRQLRLRRRDS 174

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score =  264 bits (678), Expect = 2e-91
 Identities = 59/170 (34%), Positives = 94/170 (55%), Gaps = 3/170 (1%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V  DG+T  L I DTAGQE
Sbjct: 22  YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 80

Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
            +  +   Y R   G + V+ + + +SF ++  +  +I R   S++V  +LVGNKCDL  
Sbjct: 81  EYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLP- 139

Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQP 177
            + V  + A   A   GIPF+ETSAK+   VE AF  +   I+     + 
Sbjct: 140 TRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYRMKKL 189

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score =  263 bits (675), Expect = 2e-91
 Identities = 57/163 (34%), Positives = 92/163 (56%), Gaps = 3/163 (1%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++   + +++    TI   ++ + V  DG+T  L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62

Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
            +  +   Y R   G + V+ + + +SF ++ Q+  +I R   S++V  +LVGNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLA- 121

Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIK 170
            + V    A+  A   GIP++ETSAK+   VE AF  +   I+
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score =  263 bits (673), Expect = 5e-91
 Identities = 66/167 (39%), Positives = 98/167 (58%), Gaps = 3/167 (1%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            KL+L+G++ VGKS ++LRF  + + E+   TIG  F  + V  +  T+K +IWDTAGQE
Sbjct: 4   IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63

Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLT-- 126
           RF ++   YYR A   +VVYDVT  +SF   + W+ E+   AS+++   LVGNK D    
Sbjct: 64  RFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQE 123

Query: 127 -ANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
              + V+ E  +  A+E G+ F ETSAK+  NV   F+ +   I  +
Sbjct: 124 GGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIPLK 170

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score =  262 bits (672), Expect = 3e-90
 Identities = 51/181 (28%), Positives = 90/181 (49%), Gaps = 7/181 (3%)

Query: 2   NNEYDYLFKLLLIGDSGVGKSCLLLRFADDSY-LESYISTIGVDFKIRTVEQDGKT---I 57
           +   +  ++++LIG+ GVGKS L   FA     ++S    +G D   RT+  DG++   I
Sbjct: 31  SESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATII 90

Query: 58  KLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDR-YASENVNK 116
            L +W+  G+  +  +     +     ++VY +TD+ SF    +   ++ R   +E++  
Sbjct: 91  LLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPI 148

Query: 117 LLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQ 176
           +LVGNK DL   + VS    +A A      F+ETSA    NV++ F  +   ++ R  S+
Sbjct: 149 ILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLRRDSK 208

Query: 177 P 177
            
Sbjct: 209 E 209

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score =  258 bits (663), Expect = 2e-89
 Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 3/164 (1%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++F    ++E Y  TI   ++ + VE D +   L+I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTE 62

Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRY-ASENVNKLLVGNKCDLTA 127
           +F  +   Y +   G  +VY +T Q +FN+++    +I R   +E+V  +LVGNKCDL  
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122

Query: 128 NKVVSYETAKAFADE-IGIPFMETSAKSATNVEQAFMAMAASIK 170
            +VV  E  +  A +     F+E+SAKS  NV + F  +   I 
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQIN 166

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score =  257 bits (660), Expect = 1e-88
 Identities = 55/174 (31%), Positives = 86/174 (49%), Gaps = 4/174 (2%)

Query: 5   YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDT 64
                KL + G +GVGKS L++RF    ++  Y  T+   ++      D + + ++I DT
Sbjct: 25  KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYR-HQATIDDEVVSMEILDT 83

Query: 65  AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRY-ASENVNKLLVGNKC 123
           AGQE        + R   G ++VYD+TD+ SF  V    N +D     +NV  +LVGNK 
Sbjct: 84  AGQEDTIQ-REGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKA 142

Query: 124 DLTANKVVSYETAKAFADEIGIPFMETSAKSA-TNVEQAFMAMAASIKNRMASQ 176
           DL  ++ VS E  +  A E+   F E SA +   N+ + F  +   ++ R   Q
Sbjct: 143 DLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRRRMVQ 196

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score =  250 bits (640), Expect = 1e-85
 Identities = 51/187 (27%), Positives = 89/187 (47%), Gaps = 7/187 (3%)

Query: 5   YDYLFKLLLIGDSGVGKSCLLLRFADDSY-LESYISTIGVDFKIRTVEQDGKT---IKLQ 60
               ++++LIG+ GVGKS L   FA     ++S    +G D   RT+  DG++   I L 
Sbjct: 3   GMTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLD 62

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDR-YASENVNKLLV 119
           +W+  G+  +  +     +     ++VY +TD+ SF    +   ++ R   +E++  +LV
Sbjct: 63  MWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILV 120

Query: 120 GNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPAS 179
           GNK DL   + VS    +A A      F+ETSA    NV++ F  +   ++ R  S+  +
Sbjct: 121 GNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQVRLRRDSKEKN 180

Query: 180 NNARPPT 186
                  
Sbjct: 181 ERRLAYQ 187

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score =  241 bits (617), Expect = 2e-82
 Identities = 38/177 (21%), Positives = 76/177 (42%), Gaps = 15/177 (8%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLE--SYISTIGVDFKIRTVEQDGK---TIKLQIWD 63
            KL+++G++G GK+ LL +       +     +T+G+D K   ++   K    + L +WD
Sbjct: 3   MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWD 62

Query: 64  TAGQERFRTITSSYYRGAHGIIVVYDVTDQES-FNNVKQWLNEIDRYASENVNKLLVGNK 122
            AG+E F +    +       + VYD++  ++  + +K WL  I   AS +   +LVG  
Sbjct: 63  FAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSP-VILVGTH 121

Query: 123 CDLTANK---VVSYETAKAFADEIGIP-----FMETSAKSATNVEQAFMAMAASIKN 171
            D++  K       +  K   ++ G P         + + +  + +    +     N
Sbjct: 122 LDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLN 178

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score =  237 bits (607), Expect = 1e-80
 Identities = 42/169 (24%), Positives = 72/169 (42%), Gaps = 6/169 (3%)

Query: 6   DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTA 65
                L ++G  G GKS L ++F    ++  Y   +   +       D + + L++ DTA
Sbjct: 19  PLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYS-SEETVDHQPVHLRVMDTA 77

Query: 66  GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA---SENVNKLLVGNK 122
             +  R     Y   AH  +VVY V  ++SF++   +L  +  +A     ++  LL+GNK
Sbjct: 78  DLDTPRNCER-YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNK 136

Query: 123 CDLTANKVVSYETAKAFADEIGIPFMETSAK-SATNVEQAFMAMAASIK 170
            D+   + V+     A A   G  F E SA     +V+  F       +
Sbjct: 137 LDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVREAR 185

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score =  235 bits (602), Expect = 5e-80
 Identities = 38/169 (22%), Positives = 76/169 (44%), Gaps = 11/169 (6%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K+ ++G+   GKS L+ R+   +Y++   S  G  FK + +  DG++  L I D  G  
Sbjct: 21  LKVGIVGNLSSGKSALVHRYLTGTYVQEE-SPEGGRFK-KEIVVDGQSYLLLIRDEGGPP 78

Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
             +     +      ++ V+ + D+ SF  V  +   +  +  +  V  +LVG +  ++A
Sbjct: 79  ELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISA 133

Query: 128 N--KVVSYETAKAFADEIG-IPFMETSAKSATNVEQAFMAMAASIKNRM 173
              +V+    A+  + ++    + ET A    NVE+ F  +A  +    
Sbjct: 134 ANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVALR 182

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score =  224 bits (573), Expect = 1e-75
 Identities = 43/175 (24%), Positives = 76/175 (43%), Gaps = 13/175 (7%)

Query: 8   LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
             +L ++GD+  GKS L+ RF   SY +    T    +K + +  DG+T  + I + AG 
Sbjct: 7   ELRLGVLGDARSGKSSLIHRFLTGSY-QVLEKTESEQYK-KEMLVDGQTHLVLIREEAGA 64

Query: 68  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRY---ASENVNKLLVG--NK 122
              +     +   A  +I V+ + D+ SF  V +   ++          +   LVG  ++
Sbjct: 65  PDAK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDR 119

Query: 123 CDLTANKVVSYETAKAF-ADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQ 176
              ++ +VV    A+A  AD     + ET A    NV++ F  +A  +      Q
Sbjct: 120 ISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTLRKQQ 174

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score =  222 bits (568), Expect = 1e-70
 Identities = 35/209 (16%), Positives = 76/209 (36%), Gaps = 16/209 (7%)

Query: 2   NNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVE--------QD 53
              +    K+ LIGD   GK+ LL +   +++      T G++   +            +
Sbjct: 35  ALVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDE 94

Query: 54  GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASEN 113
            K      WD  GQE        +   +   +++ D     + +N   WL  I++Y  ++
Sbjct: 95  LKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSR---TDSNKHYWLRHIEKYGGKS 151

Query: 114 VNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRM 173
              ++V NK D   +  +  +        I   F   S K+   VE    ++ +++ +  
Sbjct: 152 P-VIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSAVLH-- 208

Query: 174 ASQPASNNARPPT-VQIRGQPVNQKSGCC 201
                      P+ ++++ + V   +   
Sbjct: 209 -PDSIYGTPLAPSWIKVKEKLVEATTAQR 236

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score =  186 bits (475), Expect = 1e-60
 Identities = 43/176 (24%), Positives = 86/176 (48%), Gaps = 7/176 (3%)

Query: 2   NNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQI 61
                   K++++GD  VGK+CLLL F+      +Y+ T+  +F    ++   +   L +
Sbjct: 17  IENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSH-VMKYKNEEFILHL 75

Query: 62  WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVG 120
           WDTAGQE +  +    Y  +  +++ + V ++ SF+N+  +W  EI  Y  +    +LVG
Sbjct: 76  WDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHY-IDTAKTVLVG 134

Query: 121 NKCDL--TANKVVSYETAKAFADEIG-IPFMETSAKSATNVEQAF-MAMAASIKNR 172
            K DL    +  V+ +       ++G + ++E S+ +   + + F  ++     N+
Sbjct: 135 LKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSNK 190

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score =  175 bits (445), Expect = 8e-56
 Identities = 54/179 (30%), Positives = 95/179 (53%), Gaps = 17/179 (9%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K++L+GD G GK+ LL+ FAD ++ ESY  T+   + +  ++  GK + L IWDTAGQ+
Sbjct: 35  VKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQD 93

Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDL-- 125
            +  +   +Y  A  +++ +DVT   SF+N+  +W  E++ +  + V  ++VG K DL  
Sbjct: 94  DYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIVVGCKTDLRK 152

Query: 126 ----------TANKVVSYETAKAFADEIG-IPFMETSAKSATNVEQAF-MAMAASIKNR 172
                        + V+Y   +  A  +G + ++E SA+   NV   F  A   ++ +R
Sbjct: 153 DKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVALSSR 211

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score =  174 bits (442), Expect = 9e-56
 Identities = 56/181 (30%), Positives = 89/181 (49%), Gaps = 19/181 (10%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K + +GD  VGK+CLL+ +  +++   Y+ T+  +F    V  +G T+ L +WDTAGQE
Sbjct: 9   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGATVNLGLWDTAGQE 67

Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDL-- 125
            +  +    YRGA   I+ + +  + S+ NV  +W+ E+  YA   V  +LVG K DL  
Sbjct: 68  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIVLVGTKLDLRD 126

Query: 126 --------TANKVVSYETAKAFADEIGIP-FMETSAKSATNVEQAFMAMAASIKNRMASQ 176
                        ++    +     IG P ++E S+KS  NV+  F A       R+  Q
Sbjct: 127 DKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAI-----RVVLQ 181

Query: 177 P 177
           P
Sbjct: 182 P 182

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score =  173 bits (439), Expect = 6e-55
 Identities = 56/182 (30%), Positives = 94/182 (51%), Gaps = 17/182 (9%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           KL+++GD   GK+CLL+ F+ D + E Y+ T+  ++ +  +E DGK ++L +WDTAGQE 
Sbjct: 27  KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 85

Query: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDL--- 125
           +  +    Y     I++ + V   +S  N+  +W+ E+  +   NV  +LV NK DL   
Sbjct: 86  YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFC-PNVPIILVANKKDLRSD 144

Query: 126 ---------TANKVVSYETAKAFADEIG-IPFMETSAKSATNVEQAF-MAMAASIKNRMA 174
                       + V  +  +A A  I    ++E SAK+   V + F  A  A+++ R  
Sbjct: 145 EHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQKRYG 204

Query: 175 SQ 176
           SQ
Sbjct: 205 SQ 206

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score =  168 bits (428), Expect = 2e-53
 Identities = 55/180 (30%), Positives = 90/180 (50%), Gaps = 17/180 (9%)

Query: 6   DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTA 65
               KL+++GD   GK+CLL+ F+ D + E Y+ T+  +  I  +E DGK ++L +WDTA
Sbjct: 23  AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF-ENYIADIEVDGKQVELALWDTA 81

Query: 66  GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCD 124
           GQE +  +    Y     I++ + +   +S  N+  +W  E+  +   NV  +LVGNK D
Sbjct: 82  GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKD 140

Query: 125 L------------TANKVVSYETAKAFADEIG-IPFMETSAKSATNVEQAF-MAMAASIK 170
           L               + V  E  +  A+ I    ++E SAK+   V + F MA  A ++
Sbjct: 141 LRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ 200

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score =  168 bits (427), Expect = 3e-53
 Identities = 52/186 (27%), Positives = 91/186 (48%), Gaps = 18/186 (9%)

Query: 1   MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ 60
           M+   +   K++++GDS  GK+ LL  FA D + E+Y+ T+  ++   + E D + I+L 
Sbjct: 21  MDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTA-SFEIDTQRIELS 79

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLV 119
           +WDT+G   +  +    Y  +  +++ +D++  E+ ++V  +W  EI  +   N   LLV
Sbjct: 80  LWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLV 138

Query: 120 GNKCDL------------TANKVVSYETAKAFADEIG-IPFMETSAKSATN-VEQAF-MA 164
           G K DL                 VSY+     A +IG   ++E SA  + N V   F +A
Sbjct: 139 GCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVA 198

Query: 165 MAASIK 170
             A + 
Sbjct: 199 TLACVN 204

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score =  163 bits (415), Expect = 2e-51
 Identities = 54/204 (26%), Positives = 98/204 (48%), Gaps = 24/204 (11%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K + +GD  VGK+C+L+ +  + +   YI T+  +F    V  DG+ + L +WDTAGQE
Sbjct: 10  IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQE 68

Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTA 127
            +  +    YRGA   ++ + +  + S+ NV  +W+ E+ R+ + NV  +LVG K DL  
Sbjct: 69  DYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRF-APNVPIVLVGTKLDLRD 127

Query: 128 N--------KVVSYETAKAFADEIG-IPFMETSAKSATNVEQAF-MAMAASIKNRMASQP 177
           +         V++    +    +IG   ++E S+K+  NV+  F  A+   ++     + 
Sbjct: 128 DKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRKEV 187

Query: 178 ASNNARPPTVQIRGQPVNQKSGCC 201
                            +++SGC 
Sbjct: 188 PRRRKN-----------HRRSGCS 200

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255

 Score =  162 bits (412), Expect = 2e-50
 Identities = 42/221 (19%), Positives = 74/221 (33%), Gaps = 66/221 (29%)

Query: 15  GDSGVGKSCLLLRF---ADDSYLESYISTIG-VDFKIRTVE--------------QDGKT 56
           G  G+GKSCL  RF   + D +   + S +   DF  R V               +D   
Sbjct: 35  GQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE 94

Query: 57  IKLQIW-------DTAGQERFRTITSSYYRGA---------------------------- 81
            K+ I        D   Q    T    Y + A                            
Sbjct: 95  CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQK 154

Query: 82  ---------HGIIVVYDVT--DQESFNNVKQWLNEIDRYASENVNK-LLVGNKCDLTANK 129
                     G ++  DV+     +F++  ++++ +    ++     ++V  KCD    +
Sbjct: 155 QMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVER 214

Query: 130 VVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIK 170
            +      A + +  +  +ETSA+S  NV+ AF  +   I 
Sbjct: 215 YIRDAHTFALSKK-NLQVVETSARSNVNVDLAFSTLVQLID 254

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score =  159 bits (405), Expect = 4e-50
 Identities = 51/177 (28%), Positives = 88/177 (49%), Gaps = 18/177 (10%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           K++++GDS  GK+ LL  FA D + E+Y+ T+  ++   + E D + I+L +WDT+G   
Sbjct: 9   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTA-SFEIDTQRIELSLWDTSGSPY 67

Query: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDL--- 125
           +  +    Y  +  +++ +D++  E+ ++V  +W  EI  +   N   LLVG K DL   
Sbjct: 68  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTD 126

Query: 126 ---------TANKVVSYETAKAFADEIG-IPFMETSAKSATN-VEQAF-MAMAASIK 170
                         VSY+     A +IG   ++E SA  + N V   F +A  A + 
Sbjct: 127 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 183

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score =  159 bits (403), Expect = 1e-49
 Identities = 49/168 (29%), Positives = 80/168 (47%), Gaps = 16/168 (9%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K +++GD  VGK+CLL+ +  +++   YI T+  D     V  DGK + L +WDTAGQE
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 89

Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDL-- 125
            +  +    Y      ++ + +    SF NV+ +W  E+  +   N   +LVG K DL  
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHH-CPNTPIILVGTKLDLRD 148

Query: 126 ----------TANKVVSYETAKAFADEIG-IPFMETSAKSATNVEQAF 162
                          ++Y    A A EIG + ++E SA +   ++  F
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score =  153 bits (388), Expect = 2e-47
 Identities = 49/167 (29%), Positives = 80/167 (47%), Gaps = 16/167 (9%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           K +++GD  VGK+CLL+ +  +++   YI T+  D     V  DGK + L +WDTAGQE 
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 65

Query: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDL--- 125
           +  +    Y      ++ + +    SF NV+ +W  E+  +   N   +LVG K DL   
Sbjct: 66  YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHH-CPNTPIILVGTKLDLRDD 124

Query: 126 ---------TANKVVSYETAKAFADEIG-IPFMETSAKSATNVEQAF 162
                         ++Y    A A EIG + ++E SA +   ++  F
Sbjct: 125 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 171

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score =  153 bits (389), Expect = 2e-47
 Identities = 54/178 (30%), Positives = 84/178 (47%), Gaps = 17/178 (9%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           K +L+GD  VGK+ L++ +  + Y   YI T   D     V  DG+ ++LQ+ DTAGQ+ 
Sbjct: 22  KCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTA-FDNFSAVVSVDGRPVRLQLCDTAGQDE 80

Query: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDL--- 125
           F  +    Y      ++ + V    SF NV  +W+ EI  +       +LVG + DL   
Sbjct: 81  FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCH-CPKAPIILVGTQSDLRED 139

Query: 126 ---------TANKVVSYETAKAFADEIG-IPFMETSAKSATNVEQAF-MAMAASIKNR 172
                       K V  E AK  A+EI    ++E SA +  N+++ F  A+ A I+  
Sbjct: 140 VKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVAGIQYS 197

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score =  150 bits (381), Expect = 3e-46
 Identities = 47/184 (25%), Positives = 88/184 (47%), Gaps = 17/184 (9%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            KL+L+GD   GK+ +L   A D Y E+Y+ T+  ++    +E + + ++L +WDT+G  
Sbjct: 28  CKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSP 86

Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDL-- 125
            +  +    Y  +  +++ +D++  E+ ++  K+W  EI  Y   +   LL+G K DL  
Sbjct: 87  YYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRT 145

Query: 126 ----------TANKVVSYETAKAFADEIG-IPFMETSAK-SATNVEQAFMAMAASIKNRM 173
                          +SYE   A A ++G   ++E SA  S  ++   F   +    N+ 
Sbjct: 146 DLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKP 205

Query: 174 ASQP 177
           +  P
Sbjct: 206 SPLP 209

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score =  149 bits (377), Expect = 7e-46
 Identities = 52/176 (29%), Positives = 87/176 (49%), Gaps = 16/176 (9%)

Query: 1   MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ 60
            +     + K +++GD  VGK+CLL+ +A+D++ E Y+ T+  D    +V   GK   L 
Sbjct: 11  AHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLG 69

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLV 119
           ++DTAGQE +  +    Y      ++ + V +  SF NVK +W+ E+  Y + NV  LL+
Sbjct: 70  LYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY-APNVPFLLI 128

Query: 120 GNKCDL------------TANKVVSYETAKAFADEIG-IPFMETSAKSATNVEQAF 162
           G + DL               K +  E  +  A EIG   ++E SA +   ++  F
Sbjct: 129 GTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVF 184

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332

 Score =  112 bits (280), Expect = 5e-30
 Identities = 50/185 (27%), Positives = 86/185 (46%), Gaps = 17/185 (9%)

Query: 1   MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ 60
           ++     L K +++GD  VGK+CLL+ +  +++   YI T+  D     V  DGK + L 
Sbjct: 148 IDEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLG 206

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLNEIDRYASENVNKLLV 119
           +WDTAG E +  +    Y      ++ + +    SF++V+  W  E+  +   N   +LV
Sbjct: 207 LWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILV 265

Query: 120 GNKCDL------------TANKVVSYETAKAFADEIG-IPFMETSAKSATNVEQAF-MAM 165
           G K DL                 ++Y    A A EIG + ++E SA +   ++  F  A+
Sbjct: 266 GTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 325

Query: 166 AASIK 170
            A + 
Sbjct: 326 RAVLC 330

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score =  100 bits (250), Expect = 1e-26
 Identities = 32/183 (17%), Positives = 57/183 (31%), Gaps = 17/183 (9%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLES----------YISTIGVDFKIRTVEQ-DGKTI 57
           FK++  G    GK+  L                        T+  DF    + +  G   
Sbjct: 15  FKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKT 74

Query: 58  KLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNK- 116
           +  ++   GQ  +        RG  GI+ V D        N +   N  +  A   +   
Sbjct: 75  RFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLD 134

Query: 117 ---LLVG-NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
              +++  NK DL  + +           E   P +E  A     V +    ++  +  R
Sbjct: 135 DVPIVIQVNKRDL-PDALPVEMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLAR 193

Query: 173 MAS 175
           +A 
Sbjct: 194 VAG 196

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score = 86.5 bits (215), Expect = 1e-21
 Identities = 42/171 (24%), Positives = 71/171 (41%), Gaps = 14/171 (8%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            +L L+G    GK+  +   A   + E  I T+G  F +R + +    + +++WD  GQ 
Sbjct: 23  MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGN--VTIKLWDIGGQP 78

Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTA 127
           RFR++   Y RG   I+ + D  DQE     K  L+ +      + +  L++GNK DL  
Sbjct: 79  RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDL-P 137

Query: 128 NKVVSYETAKAFA-DEIG-----IPFMETSAKSATNVEQAFMAMAASIKNR 172
             +   E  +      I            S K   N++     +    K+R
Sbjct: 138 GALDEKELIEKMNLSAIQDREICC--YSISCKEKDNIDITLQWLIQHSKSR 186

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187

 Score = 85.4 bits (212), Expect = 3e-21
 Identities = 37/177 (20%), Positives = 74/177 (41%), Gaps = 17/177 (9%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K++++G    GK+ +L +F+ +  + +   TIG    +  +       +  +WD  GQE
Sbjct: 17  HKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIG--SNVEEIVI--NNTRFLMWDIGGQE 71

Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNK---LLV-GNKCD 124
             R+  ++YY     +IVV D TD+E  +  ++   E+ +  +    +   LL+  NK D
Sbjct: 72  SLRSSWNTYYTNTEFVIVVVDSTDRERISVTRE---ELYKMLAHEDLRKAGLLIFANKQD 128

Query: 125 LTANKVVSYETAKAFA-DEIG---IPFMETSAKSATNVEQAFMAMAASIKNRMASQP 177
           +    +   E ++      I           A +   + Q    M + +K R+    
Sbjct: 129 V-KECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKIRLEHHH 184

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192

 Score = 85.4 bits (212), Expect = 3e-21
 Identities = 39/182 (21%), Positives = 72/182 (39%), Gaps = 16/182 (8%)

Query: 1   MNNEYDYLF-----KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGK 55
             + +  +F     ++L++G    GK+ +L +      + + I TIG  F + TVE   K
Sbjct: 17  RGSLFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--K 71

Query: 56  TIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYAS-ENV 114
            I   +WD  GQ++ R +   Y++   G+I V D  D+E        L ++ +     + 
Sbjct: 72  NICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDA 131

Query: 115 NKLLVGNKCDLTANKVVSYETAKAFA-DEIG---IPFMETSAKSATNVEQAFMAMAASIK 170
             L+  NK D+  N +   E         +         T A   T +      ++  + 
Sbjct: 132 VLLVFANKQDM-PNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELS 190

Query: 171 NR 172
            R
Sbjct: 191 KR 192

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171

 Score = 84.5 bits (210), Expect = 6e-21
 Identities = 45/172 (26%), Positives = 74/172 (43%), Gaps = 17/172 (9%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            ++L++G  G GK+ +L R      + + I TIG  F + TV    K +K Q+WD  G  
Sbjct: 8   MRILILGLDGAGKTTILYRLQVGEVVTT-IPTIG--FNVETVTY--KNLKFQVWDLGGLT 62

Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNK---LLV-GNKCD 124
             R     YY     +I V D  D++     K    E+     E   +   L+V  NK D
Sbjct: 63  SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKS---ELVAMLEEEELRKAILVVFANKQD 119

Query: 125 LTANKVVSYETAKAFA-DEIG---IPFMETSAKSATNVEQAFMAMAASIKNR 172
           +    + S E A +     +        +TSA   T +++A   +  ++K+R
Sbjct: 120 M-EQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 170

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190

 Score = 84.6 bits (210), Expect = 6e-21
 Identities = 33/172 (19%), Positives = 70/172 (40%), Gaps = 13/172 (7%)

Query: 9   FKLLLIGDSGVGKSCLLLRFA-DDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
             +L +G    GK+ ++ +    ++  ++ + TIG  F I   +    ++   ++D +GQ
Sbjct: 22  VHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKS--SSLSFTVFDMSGQ 77

Query: 68  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEI---DRYASENVNKLLVGNKCD 124
            R+R +   YY+    II V D +D+      K+ L+ +          +  L   NK D
Sbjct: 78  GRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMD 137

Query: 125 LTANKVVSYETAKAFA-DEIG---IPFMETSAKSATNVEQAFMAMAASIKNR 172
           L  + V S + ++    + I         + A     +++    +   I+  
Sbjct: 138 L-RDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQIQTV 188

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164

 Score = 82.6 bits (205), Expect = 2e-20
 Identities = 44/171 (25%), Positives = 78/171 (45%), Gaps = 17/171 (9%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           ++L++G    GK+ +L +      + + I TIG  F + TVE   K I   +WD  GQ++
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQDK 56

Query: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNK---LLV-GNKCDL 125
            R +   Y++   G+I V D  D+E  N  ++   E+ R  +E+  +   LLV  NK DL
Sbjct: 57  IRPLWRHYFQNTQGLIFVVDSNDRERVNEARE---ELMRMLAEDELRDAVLLVFANKQDL 113

Query: 126 TANKVVSYETAKAFA-DEIG---IPFMETSAKSATNVEQAFMAMAASIKNR 172
             N + + E         +         T A S   + +    ++  ++N+
Sbjct: 114 -PNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 163

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183

 Score = 82.7 bits (205), Expect = 3e-20
 Identities = 42/172 (24%), Positives = 70/172 (40%), Gaps = 17/172 (9%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            ++L++G  G GK+ +L R      + +   TIG  F + T+    K +KL +WD  GQ 
Sbjct: 19  LRILILGLDGAGKTTILYRLQIGEVVTT-KPTIG--FNVETLSY--KNLKLNVWDLGGQT 73

Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNK---LLV-GNKCD 124
             R     YY     +I V D TD++  +   +   E+     E   +   LLV  NK D
Sbjct: 74  SIRPYWRCYYADTAAVIFVVDSTDKDRMSTASK---ELHLMLQEEELQDAALLVFANKQD 130

Query: 125 LTANKVVSYETAKAFA-DEIG---IPFMETSAKSATNVEQAFMAMAASIKNR 172
                + + E +K     E+       + +SA     + +    +   IK  
Sbjct: 131 Q-PGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEE 181

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189

 Score = 82.7 bits (205), Expect = 4e-20
 Identities = 36/172 (20%), Positives = 72/172 (41%), Gaps = 17/172 (9%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            ++L++G    GK+ +L R      + + + T+G    + T++   K I  ++WD  GQ 
Sbjct: 23  IRVLMLGLDNAGKTSILYRLHLGDVVTT-VPTVG--VNLETLQY--KNISFEVWDLGGQT 77

Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNK---LLV-GNKCD 124
             R     Y+     +I V D TD++     K    E+     E+  +   LL+  NK D
Sbjct: 78  GVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKH---ELYALLDEDELRKSLLLIFANKQD 134

Query: 125 LTANKVVSYETAKAFA-DEIG---IPFMETSAKSATNVEQAFMAMAASIKNR 172
           L  +     E A+      I       +++S+K+   + +    +   ++ +
Sbjct: 135 L-PDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERLREQ 185

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186

 Score = 80.4 bits (199), Expect = 2e-19
 Identities = 40/170 (23%), Positives = 71/170 (41%), Gaps = 11/170 (6%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            +LL++G    GK+ +L +F  +        T+G  F I+T+E   +  KL IWD  GQ+
Sbjct: 19  LRLLMLGLDNAGKTTILKKFNGEDVDTI-SPTLG--FNIKTLEH--RGFKLNIWDVGGQK 73

Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTA 127
             R+   +Y+    G+I V D  D++   + ++ L  +           L+  NK DL  
Sbjct: 74  SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDL-P 132

Query: 128 NKVVSYETAKAFA-DEIG---IPFMETSAKSATNVEQAFMAMAASIKNRM 173
             +      +A   D I          SA +  ++      +   I +R+
Sbjct: 133 GALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSRV 182

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181

 Score = 79.9 bits (198), Expect = 3e-19
 Identities = 42/171 (24%), Positives = 71/171 (41%), Gaps = 15/171 (8%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            ++LL+G    GK+ LL + A +        T G  F I++V+   +  KL +WD  GQ 
Sbjct: 17  VRILLLGLDNAGKTTLLKQLASEDISHI-TPTQG--FNIKSVQS--QGFKLNVWDIGGQR 71

Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNK--LLV-GNKCDL 125
           + R    SY+     +I V D  D++ F    Q L E+     E ++   +L+  NK DL
Sbjct: 72  KIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTEL--LEEEKLSCVPVLIFANKQDL 129

Query: 126 TANKVVSYETAKAFA-DEIG---IPFMETSAKSATNVEQAFMAMAASIKNR 172
                 + E A+      I          SA +   V+     +  ++  +
Sbjct: 130 -LTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNAK 179

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181

 Score = 75.7 bits (187), Expect = 1e-17
 Identities = 35/169 (20%), Positives = 71/169 (42%), Gaps = 17/169 (10%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K++++G    GK+ +L +F+ +  + +   TIG    +  +       +  +WD  GQE
Sbjct: 22  HKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIG--SNVEEIVI--NNTRFLMWDIGGQE 76

Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNK---LLV-GNKCD 124
             R+  ++YY     +IVV D TD+E  +  ++   E+ +  +    +   LL+  NK D
Sbjct: 77  SLRSSWNTYYTNTEFVIVVVDSTDRERISVTRE---ELYKMLAHEDLRKAGLLIFANKQD 133

Query: 125 LTANKVVSYETAKAFA-DEIG---IPFMETSAKSATNVEQAFMAMAASI 169
           +    +   E ++      I           A +   + Q    M + +
Sbjct: 134 V-KECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 181

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 76.2 bits (187), Expect = 1e-17
 Identities = 35/175 (20%), Positives = 69/175 (39%), Gaps = 30/175 (17%)

Query: 10  KLLLIGDSGVGKSCLL------LRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWD 63
           ++LL+G    GKS +       +   +  +LES   T         +      +  QIWD
Sbjct: 22  RILLMGLRRSGKSSIQKVVFHKMSPNETLFLES---TNK--IYKDDISNSSF-VNFQIWD 75

Query: 64  TAGQERFRTITS---SYYRGAHGIIVVYDVTDQ--ESFNNVKQWLNEIDRYASENVNKLL 118
             GQ  F   T      +RG   +I V D  D   E+   +   +++  +  + ++N  +
Sbjct: 76  FPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKV-NPDMNFEV 134

Query: 119 VGNKCDLTAN-----------KVVSYETAKAFADEIGIPFMETSAKSATNVEQAF 162
             +K D  ++           +  + + A A  +++ + F  TS    + + +AF
Sbjct: 135 FIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYDHS-IFEAF 188

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190

 Score = 74.1 bits (183), Expect = 5e-17
 Identities = 29/120 (24%), Positives = 48/120 (40%), Gaps = 12/120 (10%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           KLL +G    GK+ LL    +D        T         +      IK   +D  G  +
Sbjct: 25  KLLFLGLDNAGKTTLLHMLKNDRLATL-QPTWH--PTSEELAI--GNIKFTTFDLGGHIQ 79

Query: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASE----NVNKLLVGNKCDL 125
            R +   Y+   +GI+ + D  D E F+  +    E+D   +     +V  +++GNK D 
Sbjct: 80  ARRLWKDYFPEVNGIVFLVDAADPERFDEARV---ELDALFNIAELKDVPFVILGNKIDA 136

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198

 Score = 73.5 bits (181), Expect = 1e-16
 Identities = 30/120 (25%), Positives = 51/120 (42%), Gaps = 12/120 (10%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           KL+ +G    GK+ LL    DD  L  ++ T+        +      +    +D  G  +
Sbjct: 27  KLVFLGLDNAGKTTLLHMLKDD-RLGQHVPTLH--PTSEELTI--AGMTFTTFDLGGHIQ 81

Query: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASE----NVNKLLVGNKCDL 125
            R +  +Y    +GI+ + D  D E     K+   E+D   ++    NV  L++GNK D 
Sbjct: 82  ARRVWKNYLPAINGIVFLVDCADHERLLESKE---ELDSLMTDETIANVPILILGNKIDR 138

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 72.7 bits (178), Expect = 1e-15
 Identities = 30/125 (24%), Positives = 53/125 (42%), Gaps = 11/125 (8%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIG--VDFKIRTVEQDGKTIKLQIWDTAGQ 67
           KLLL+G SG GKS +       +Y       +G  +D +   +   G  + L +WD  GQ
Sbjct: 5   KLLLMGRSGSGKSSMR-SIIFSNYSAFDTRRLGATIDVEHSHLRFLGN-MTLNLWDCGGQ 62

Query: 68  ERF-----RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEI--DRYASENVNKLLVG 120
           + F            ++    +I V+DV   E   +++ +   +   R  S +    ++ 
Sbjct: 63  DVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLL 122

Query: 121 NKCDL 125
           +K DL
Sbjct: 123 HKMDL 127

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193

 Score = 69.8 bits (171), Expect = 3e-15
 Identities = 23/125 (18%), Positives = 45/125 (36%), Gaps = 15/125 (12%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
            +++ G    GK+ LL     DS   + + +            D     + + D  G  +
Sbjct: 50  SIIIAGPQNSGKTSLLTLLTTDSVRPT-VVSQE-----PLSAADYDGSGVTLVDFPGHVK 103

Query: 70  FRTITSSYYR----GAHGIIVVYD-VTDQESFNNVKQWLNEI----DRYASENVNKLLVG 120
            R   S Y +       G+I + D   D +      ++L +I    +      ++ L+  
Sbjct: 104 LRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIAC 163

Query: 121 NKCDL 125
           NK +L
Sbjct: 164 NKSEL 168

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329

 Score = 71.8 bits (176), Expect = 3e-15
 Identities = 44/180 (24%), Positives = 78/180 (43%), Gaps = 17/180 (9%)

Query: 1   MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ 60
                    ++L++G    GK+ +L +      + + I TIG  F + TVE   K I   
Sbjct: 158 RGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFT 212

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNK---L 117
           +WD  GQ++ R +   Y++   G+I V D  D+E  N  ++   E+ R  +E+  +   L
Sbjct: 213 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEARE---ELMRMLAEDELRDAVL 269

Query: 118 LV-GNKCDLTANKVVSYETAKAFA-DEIG---IPFMETSAKSATNVEQAFMAMAASIKNR 172
           LV  NK DL  N + + E         +         T A S   + +    ++  ++N+
Sbjct: 270 LVFANKQDL-PNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 328

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214

 Score = 69.0 bits (169), Expect = 8e-15
 Identities = 27/122 (22%), Positives = 51/122 (41%), Gaps = 9/122 (7%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVE-QDGKTIKLQIWDTAGQE 68
            +L +G    GK+ L +R     Y ++  ++I         +  + +   L + D  G E
Sbjct: 9   AVLFVGLCDSGKTLLFVRLLTGQYRDT-QTSIT--DSSAIYKVNNNRGNSLTLIDLPGHE 65

Query: 69  RFR-TITSSYYRGAHGIIVVYDVTD-QESFNNVKQWLNEI--DRYASENVNKLLV-GNKC 123
             R  +   +   A  ++ V D    Q    +V ++L ++  D  A +N   LL+  NK 
Sbjct: 66  SLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQ 125

Query: 124 DL 125
           D+
Sbjct: 126 DI 127

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218

 Score = 68.6 bits (168), Expect = 1e-14
 Identities = 23/124 (18%), Positives = 45/124 (36%), Gaps = 15/124 (12%)

Query: 11  LLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF 70
           +++ G    GK+ LL     DS   + + +            D     + + D  G  + 
Sbjct: 15  IIIAGPQNSGKTSLLTLLTTDSVRPT-VVSQE-----PLSAADYDGSGVTLVDFPGHVKL 68

Query: 71  RTITSSYY----RGAHGIIVVYD-VTDQESFNNVKQWLNEI----DRYASENVNKLLVGN 121
           R   S Y     +   G+I + D   D +      ++L +I    +      ++ L+  N
Sbjct: 69  RYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACN 128

Query: 122 KCDL 125
           K +L
Sbjct: 129 KSEL 132

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331

 Score = 58.1 bits (140), Expect = 2e-10
 Identities = 22/162 (13%), Positives = 53/162 (32%), Gaps = 19/162 (11%)

Query: 11  LLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF 70
           +LL+G    GKS  + +    +        +               I L + +  GQ  +
Sbjct: 2   VLLMGVRRCGKSS-ICKVVFHNMQPLDTLYLESTSNPSLEHFSTL-IDLAVMELPGQLNY 59

Query: 71  R---TITSSYYRGAHGIIVVYDVTDQ--ESFNNVKQWLNEIDRYASENVNKLLVGNKCDL 125
                 +   ++    ++ V D  D+   +  N+   +    +  + ++N  ++ +K D 
Sbjct: 60  FEPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKV-NPSINIEVLIHKVDG 118

Query: 126 TAN-----------KVVSYETAKAFADEIGIPFMETSAKSAT 156
            +            +    E  +   D + + F  TS    +
Sbjct: 119 LSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFDHS 160

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} Length = 357

 Score = 46.4 bits (110), Expect = 2e-06
 Identities = 39/191 (20%), Positives = 73/191 (38%), Gaps = 23/191 (12%)

Query: 11  LLLIGDSGVGKSCLLLRFAD-DSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG--- 66
           +++ G   VGKS LL         + SY  T      +   E        QI DT G   
Sbjct: 170 VVIAGHPNVGKSTLLKALTTAKPEIASYPFTT-RGINVGQFEDGYFRY--QIIDTPGLLD 226

Query: 67  ---QER----FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNK--L 117
               ER     + I +  Y G   II ++D ++   F  +++ ++  +    E  +   L
Sbjct: 227 RPISERNEIEKQAILALRYLGNL-IIYIFDPSEHCGFP-LEEQIHLFEEVHGEFKDLPFL 284

Query: 118 LVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQ---AFMAMAASIKNRMA 174
           +V NK D+   + +  +  + F  E G+  ++ SA   T ++      +     +  ++A
Sbjct: 285 VVINKIDVADEENI--KRLEKFVKEKGLNPIKISALKGTGIDLVKEEIIKTLRPLAEKVA 342

Query: 175 SQPASNNARPP 185
            +      R  
Sbjct: 343 REKIERELRRY 353

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.6 bits (107), Expect = 5e-06
 Identities = 30/198 (15%), Positives = 62/198 (31%), Gaps = 42/198 (21%)

Query: 11  LLLIGDSGVGKSCLLLRFADDSYLESYIS------TIGVDFKIRTV-------------- 50
           +L+ G  G GK+ + L       ++  +        +       TV              
Sbjct: 153 VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN 212

Query: 51  ---EQDG-KTIKLQIWDTAGQERFRT-ITSSYYRGAHGIIVVYDVTDQ---ESFN-NVKQ 101
                D    IKL+I     Q   R  + S  Y   + ++V+ +V +     +FN + K 
Sbjct: 213 WTSRSDHSSNIKLRIHSI--QAELRRLLKSKPYE--NCLLVLLNVQNAKAWNAFNLSCKI 268

Query: 102 WLNEIDRYASENVNKLLVGNKCDLTANKVVS----YETAKAFADEIGIPFMETSAKSATN 157
            L    R+     + L       ++ +         E        +     +   +    
Sbjct: 269 LL--TTRFKQ-VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP-QDLPREVLT 324

Query: 158 VEQAFMAM-AASIKNRMA 174
                +++ A SI++ +A
Sbjct: 325 TNPRRLSIIAESIRDGLA 342

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 4e-05
 Identities = 29/196 (14%), Positives = 65/196 (33%), Gaps = 39/196 (19%)

Query: 3   NEYDYLFKLLLI-GDSGVGKSCLLLRFADDSYLESYISTIGVDF---KIRTVEQDGKTIK 58
           +    LF  LL   +  V       +F ++    +Y       F    I+T ++      
Sbjct: 62  SGTLRLFWTLLSKQEEMVQ------KFVEEVLRINY------KFLMSPIKTEQRQ----- 104

Query: 59  LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLL 118
                +     +       Y     +   Y+V+  + +  ++Q L E+    ++NV  L+
Sbjct: 105 ----PSMMTRMYIEQRDRLYNDNQ-VFAKYNVSRLQPYLKLRQALLELRP--AKNV--LI 155

Query: 119 VG----NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMA 174
            G     K  +  +  +SY+       +I   F         N  +  + M   +  ++ 
Sbjct: 156 DGVLGSGKTWVALDVCLSYKVQCKMDFKI---FWLNLKNC--NSPETVLEMLQKLLYQID 210

Query: 175 SQPASNNARPPTVQIR 190
               S +     +++R
Sbjct: 211 PNWTSRSDHSSNIKLR 226

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} Length = 228

 Score = 43.2 bits (102), Expect = 2e-05
 Identities = 38/167 (22%), Positives = 63/167 (37%), Gaps = 21/167 (12%)

Query: 11  LLLIGDSGVGKSCLLLRF-ADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG--- 66
           ++L G   VGKS  +      +  ++SY  T   +  +   +      K QI DT G   
Sbjct: 32  IILSGAPNVGKSSFMNIVSRANVDVQSYSFTT-KNLYVGHFDHKLN--KYQIIDTPGLLD 88

Query: 67  ---QERFRTITSSYYRGAH---GIIVVYDVTDQESFNNVKQWLNEIDRYASENVNK--LL 118
              + R     ++    AH    I+ + D+++Q      +Q +N      S   NK  ++
Sbjct: 89  RAFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQ-INLFYSIKSVFSNKSIVI 147

Query: 119 VGNKCDLTANKVVSYETA---KAFADEI--GIPFMETSAKSATNVEQ 160
             NK D      +S +     K   D +   I F   S  +   VEQ
Sbjct: 148 GFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQ 194

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* Length = 476

 Score = 40.2 bits (95), Expect = 2e-04
 Identities = 19/142 (13%), Positives = 40/142 (28%), Gaps = 24/142 (16%)

Query: 57  IKLQIWDTAGQ------------ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLN 104
              ++ DTAG              R    +      A  I+ + D+  +   + + +   
Sbjct: 281 TMFRLTDTAGLREAGEEIEHEGIRR----SRMKMAEADLILYLLDLGTERLDDELTEIRE 336

Query: 105 EIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNV---EQA 161
               + +     L V NK D  AN                   +  SA +   +   +Q 
Sbjct: 337 LKAAHPAAKF--LTVANKLDRAANADALIRAIADGTGT---EVIGISALNGDGIDTLKQH 391

Query: 162 FMAMAASIKNRMASQPASNNAR 183
              +  ++     +     + R
Sbjct: 392 MGDLVKNLDKLHEASVLVTSLR 413

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Length = 413

 Score = 39.3 bits (91), Expect = 4e-04
 Identities = 21/166 (12%), Positives = 42/166 (25%), Gaps = 11/166 (6%)

Query: 6   DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVE--QDGKTIKLQIWD 63
             +  + + G++G GKS  +         E   +  GV          +      +  WD
Sbjct: 67  SSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWD 126

Query: 64  TAGQERFRTITSSYY--RGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGN 121
             G         +Y      +       ++      N       I            V  
Sbjct: 127 LPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMM---KKEFYFVRT 183

Query: 122 KCDLT----ANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFM 163
           K D      A+        +    +I +  + T  ++       F+
Sbjct: 184 KVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFL 229

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A Length = 172

 Score = 38.3 bits (90), Expect = 5e-04
 Identities = 25/136 (18%), Positives = 45/136 (33%), Gaps = 30/136 (22%)

Query: 57  IKLQIWDTAGQ------------ER-FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWL 103
           + L I DTAG             ER ++ I       A  ++ + D T  ++  +  +  
Sbjct: 52  MPLHIIDTAGLREASDEVERIGIERAWQEIEQ-----ADRVLFMVDGTTTDA-VDPAEIW 105

Query: 104 NEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFM 163
            E        +   +V NK D+T   +   E         G   +  SA++   V+    
Sbjct: 106 PEFIARLPAKLPITVVRNKADITGETLGMSEVN-------GHALIRLSARTGEGVDV--- 155

Query: 164 AMAASIKNRMASQPAS 179
            +   +K  M      
Sbjct: 156 -LRNHLKQSMGFDTNM 170

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* Length = 270

 Score = 39.2 bits (91), Expect = 5e-04
 Identities = 20/141 (14%), Positives = 44/141 (31%), Gaps = 22/141 (15%)

Query: 10  KLLLIGDSGVGKSCL---LLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG 66
            +L++G  GVGKS     ++   +     S   + G    + +  + G T+   I DT G
Sbjct: 41  TILVMGKGGVGKSSTVNSIIG--ERVVSISPFQSEGPRPVMVSRSRAGFTLN--IIDTPG 96

Query: 67  -----------QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVN 115
                          ++      +    ++ V  +      N  K     I     + + 
Sbjct: 97  LIEGGYINDMALNIIKSFLLD--KTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIW 154

Query: 116 K--LLVGNKCDLTANKVVSYE 134
              ++       +    + Y+
Sbjct: 155 NKAIVALTHAQFSPPDGLPYD 175

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 427

 Score = 39.3 bits (91), Expect = 5e-04
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 9   FKLLLIGDSGVGKSCLL--LRFADDSYLESYISTIGVDFKIRTVE--QDGKTIKLQIWDT 64
           F +L +G++G+GKS L+  L         +  +  GV  +  T +  +    +KL I  T
Sbjct: 43  FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVST 102

Query: 65  AG 66
            G
Sbjct: 103 VG 104

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	203
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	100.0
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	100.0
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	100.0
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	100.0
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	100.0
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	100.0
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	100.0
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	100.0
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	100.0
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	100.0
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	100.0
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	100.0
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	100.0
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	100.0
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	100.0
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	100.0
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	100.0
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	100.0
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	100.0
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	100.0
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	100.0
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	100.0
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	100.0
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	100.0
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	100.0
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	100.0
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	100.0
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	100.0
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	100.0
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	100.0
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	100.0
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	100.0
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	100.0
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	100.0
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	100.0
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	100.0
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	100.0
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	100.0
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	100.0
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	100.0
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	100.0
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	100.0
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	100.0
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	100.0
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	100.0
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	100.0
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	100.0
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	100.0
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	100.0
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	100.0
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	100.0
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	100.0
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	100.0
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	100.0
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	100.0
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	100.0
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	100.0
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	100.0
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	100.0
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	100.0
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	100.0
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	100.0
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	100.0
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	100.0
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	100.0
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	100.0
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	100.0
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	100.0
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	100.0
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	100.0
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	100.0
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	100.0
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	100.0
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	100.0
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	100.0
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	100.0
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.98
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.98
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.98
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.98
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.98
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.98
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.97
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.97
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.97
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.97
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.97
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.97
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.97
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.97
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.97
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.97
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.97
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.97
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.97
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.97
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.96
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.96
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.96
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.93
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.96
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.96
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.96
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.96
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.95
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.95
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.95
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.95
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.95
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.94
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.94
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.94
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.94
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.94
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.94
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.93
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.93
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.93
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.93
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.93
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.93
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.93
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.92
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.92
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.92
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.92
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.92
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.91
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.91
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.91
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.9
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.9
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.9
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.89
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.88
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.88
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.88
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.88
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.88
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.88
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.88
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.88
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.88
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.88
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.88
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.87
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.87
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.87
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.87
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.87
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.86
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.86
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.86
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.86
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.86
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.85
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.85
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.85
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.85
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.85
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.84
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.84
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.84
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.84
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.84
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.84
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.84
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.82
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.82
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.81
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.81
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.8
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.8
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.79
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.79
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.79
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.79
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.78
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.78
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.78
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.76
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.76
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.76
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.75
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.75
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.74
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.74
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.73
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.73
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.72
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.7
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.69
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.67
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.66
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.66
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.66
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.64
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.61
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.61
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.59
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.59
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.56
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.55
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.54
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.52
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.5
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.46
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.43
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	99.43
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.4
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.38
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	99.34
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.01
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	99.0
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.99
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.98
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.96
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	98.93
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.92
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.87
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.83
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.55
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.54
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.53
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	98.42
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	98.39
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.36
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.34
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.32
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.23
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	98.2
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	98.05
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	97.96
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	97.8
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	97.78
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	97.68
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.58
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.44
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.44
2xxa_A	433	Signal recognition particle protein; protein trans	97.41
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.4
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.36
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.35
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.34
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.32
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.3
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.3
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	97.27
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.25
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.24
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.22
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.21
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.19
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.17
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.16
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	97.16
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.15
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.14
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.13
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.11
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	97.11
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	97.11
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.1
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	97.1
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.09
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	97.09
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.08
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	97.08
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.07
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	97.07
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.06
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.05
1sgw_A	214	Putative ABC transporter; structural genomics, P p	97.05
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	97.05
1b0u_A	262	Histidine permease; ABC transporter, transport pro	97.04
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	97.03
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	97.02
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.01
1g6h_A	257	High-affinity branched-chain amino acid transport	97.0
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.0
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	96.99
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	96.99
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	96.99
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	96.99
1ji0_A	240	ABC transporter; ATP binding protein, structural g	96.98
2eyu_A	261	Twitching motility protein PILT; pilus retraction	96.98
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	96.98
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	96.97
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	96.97
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	96.97
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	96.96
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	96.96
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	96.96
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	96.95
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	96.95
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	96.94
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	96.94
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	96.94
2ghi_A	260	Transport protein; multidrug resistance protein, M	96.93
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	96.93
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	96.93
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	96.93
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	96.92
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	96.92
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	96.92
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	96.91
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	96.91
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	96.91
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	96.91
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	96.91
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	96.9
3co5_A	143	Putative two-component system transcriptional RES	96.9
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	96.9
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	96.88
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	96.88
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	96.87
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	96.87
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.85
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	96.84
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	96.84
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.83
4a74_A	231	DNA repair and recombination protein RADA; hydrola	96.83
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	96.83
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	96.82
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	96.81
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	96.81
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	96.8
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.8
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	96.8
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	96.8
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	96.79
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	96.78
1via_A	175	Shikimate kinase; structural genomics, transferase	96.77
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	96.76
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	96.75
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	96.75
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.75
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.74
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	96.74
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	96.73
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	96.73
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	96.72
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.71
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	96.69
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.68
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	96.68
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.68
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.68
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	96.67
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.66
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	96.66
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	96.65
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	96.65
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.64
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.64
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	96.64
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	96.63
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	96.63
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	96.62
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.62
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.61
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.6
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	96.6
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.6
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.6
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	96.6
2ewv_A	372	Twitching motility protein PILT; pilus retraction	96.6
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.59
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	96.59
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	96.59
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.58
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.57
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	96.57
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	96.57
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	96.56
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.56
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	96.55
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	96.55
1p9r_A	418	General secretion pathway protein E; bacterial typ	96.55
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	96.55
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	96.54
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	96.52
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	96.52
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	96.52
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	96.51
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	96.5
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	96.5
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	96.5
3kta_A	182	Chromosome segregation protein SMC; structural mai	96.5
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	96.5
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	96.5
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.5
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	96.45
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.44
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.44
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	96.44
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	96.42
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.42
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	96.41
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.41
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.39
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	96.39
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.39
2og2_A	359	Putative signal recognition particle receptor; nuc	96.35
3bos_A	242	Putative DNA replication factor; P-loop containing	96.34
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	96.34
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	96.33
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.32
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	96.31
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.31
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.3
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	96.3
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.27
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	96.27
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	96.26
1tue_A	212	Replication protein E1; helicase, replication, E1E	96.25
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	96.24
2cvh_A	220	DNA repair and recombination protein RADB; filamen	96.24
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.23
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	96.22
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	96.22
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.2
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	96.19
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	96.12
3uc9_A	233	Increased recombination centers protein 6; rossman	96.11
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.11
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.08
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	96.07
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.07
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	96.06
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	96.06
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	96.04
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	96.04
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	96.02
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	95.99
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	95.97
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	95.97
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	95.96
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	95.96
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	95.94
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	95.94
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	95.92
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	95.91
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	95.91
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	95.88
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	95.85
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	95.83
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	95.82
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	95.82
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	95.81
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	95.81
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	95.77
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	95.77
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	95.76
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	95.76
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	95.75
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	95.75
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	95.75
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	95.75
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	95.73
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	95.73
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	95.7
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	95.7
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	95.69
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	95.69
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	95.69
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	95.68
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	95.67
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	95.66
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	95.66
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	95.65
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	95.63
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	95.6
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	95.59
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	95.58
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	95.57
3cwq_A	209	Para family chromosome partitioning protein; alpha	95.55
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	95.55
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	95.51
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	95.51
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	95.5
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	95.48
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	95.47
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	95.47
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	95.46
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	95.45
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	95.45
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	95.43
2qgz_A	308	Helicase loader, putative primosome component; str	95.42
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	95.39
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	95.38
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	95.33
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	95.31
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	95.31
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	95.3
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	95.3
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	95.29
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	95.29
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	95.27
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	95.26

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=100.00  E-value=5.9e-44  Score=262.09  Aligned_cols=197  Identities=37%  Similarity=0.618  Sum_probs=146.3

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      .+.+||+|+|.+|||||||+++|..+.+...+.+|++.++....+..++..+.+.||||+|++++..++..++..+++++
T Consensus        11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~i   90 (216)
T 4dkx_A           11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAV   90 (216)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEE
T ss_pred             CCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEE
Confidence            46799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHH
Q 028792           86 VVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAM  165 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  165 (203)
                      +|||++++++|+.+..|+..+......+.|++||+||+|+.+.+.+..+++.++++.++++|++|||++|.||+++|..|
T Consensus        91 lv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~i  170 (216)
T 4dkx_A           91 VVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV  170 (216)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHH
T ss_pred             EEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHHH
Confidence            99999999999999999999988877789999999999998888899999999999999999999999999999999999


Q ss_pred             HHHHHHHhccCCCCCCCC-CCccccCCCCCCCCCCCCC
Q 028792          166 AASIKNRMASQPASNNAR-PPTVQIRGQPVNQKSGCCS  202 (203)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  202 (203)
                      .+.+.+............ ........++.+++++|||
T Consensus       171 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~C  208 (216)
T 4dkx_A          171 AAALPGMESTQDRSREDMIDIKLEKPQEQPVSEGGCSC  208 (216)
T ss_dssp             HHHC----------------------------------
T ss_pred             HHHHHhhhcccccccccccccccCCCCCCCCCCCCCce
Confidence            998875544333222111 1111222233345667777

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=100.00  E-value=8.2e-40  Score=238.78  Aligned_cols=176  Identities=75%  Similarity=1.189  Sum_probs=159.5

Q ss_pred             CCCCCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccC
Q 028792            1 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRG   80 (203)
Q Consensus         1 ~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~   80 (203)
                      |+.+.++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||+.++...+..++..
T Consensus         1 M~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   80 (206)
T 2bcg_Y            1 MNSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRG   80 (206)
T ss_dssp             --CCCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTT
T ss_pred             CCcccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccC
Confidence            66677899999999999999999999999998888888888888888888888888999999999999999999999999


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHH
Q 028792           81 AHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQ  160 (203)
Q Consensus        81 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  160 (203)
                      +|++++|||++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..++..+++...+++++++||++|.|+++
T Consensus        81 ~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~  160 (206)
T 2bcg_Y           81 SHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVED  160 (206)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHH
T ss_pred             CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Confidence            99999999999999999999999998877666799999999999988777888889999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhccC
Q 028792          161 AFMAMAASIKNRMASQ  176 (203)
Q Consensus       161 ~~~~l~~~~~~~~~~~  176 (203)
                      +|.+|.+.+.+.....
T Consensus       161 l~~~l~~~i~~~~~~~  176 (206)
T 2bcg_Y          161 AFLTMARQIKESMSQQ  176 (206)
T ss_dssp             HHHHHHHHHHHHCCHH
T ss_pred             HHHHHHHHHHHHHhhc
Confidence            9999999998765443

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=100.00  E-value=3.3e-38  Score=230.19  Aligned_cols=201  Identities=36%  Similarity=0.619  Sum_probs=151.0

Q ss_pred             CCCCCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccC
Q 028792            1 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRG   80 (203)
Q Consensus         1 ~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~   80 (203)
                      |++...+.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||+..+...+..++..
T Consensus         1 M~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   80 (207)
T 1vg8_A            1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRG   80 (207)
T ss_dssp             ------CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTT
T ss_pred             CCcccCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhC
Confidence            56677889999999999999999999999988888888888888888888888888999999999999999999999999


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHhhcC----CCCcEEEEEeCCCCCCCcccCHHHHHHHHH-HcCCCEEEEecCCC
Q 028792           81 AHGIIVVYDVTDQESFNNVKQWLNEIDRYAS----ENVNKLLVGNKCDLTANKVVSYETAKAFAD-EIGIPFMETSAKSA  155 (203)
Q Consensus        81 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~  155 (203)
                      +|++|+|+|++++.++..+..|+..+.....    .+.|+++|+||+|+. ......++...++. ..+++++++||++|
T Consensus        81 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  159 (207)
T 1vg8_A           81 ADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE-NRQVATKRAQAWCYSKNNIPYFETSAKEA  159 (207)
T ss_dssp             CSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS-CCCSCHHHHHHHHHHTTSCCEEECBTTTT
T ss_pred             CcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc-ccccCHHHHHHHHHhcCCceEEEEeCCCC
Confidence            9999999999999999999999888766543    368999999999997 44566777888877 56789999999999


Q ss_pred             CCHHHHHHHHHHHHHHHhccCCCCC-CCCCCccccCCCCCCCCCCCCC
Q 028792          156 TNVEQAFMAMAASIKNRMASQPASN-NARPPTVQIRGQPVNQKSGCCS  202 (203)
Q Consensus       156 ~gi~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  202 (203)
                      .|++++|.+|.+.+.+........+ ...+......++.+++++||||
T Consensus       160 ~gi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~c  207 (207)
T 1vg8_A          160 INVEQAFQTIARNALKQETEVELYNEFPEPIKLDKNERAKASAESCSC  207 (207)
T ss_dssp             BSHHHHHHHHHHHHHHHHHHHHHHHHSCCCC-----------------
T ss_pred             CCHHHHHHHHHHHHHHhccccccccCCCccccCCcccccccCCCCCCC
Confidence            9999999999999887654332111 1111112121233467888988

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=100.00  E-value=1.7e-36  Score=217.05  Aligned_cols=175  Identities=59%  Similarity=1.042  Sum_probs=129.5

Q ss_pred             CCCCCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccC
Q 028792            1 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRG   80 (203)
Q Consensus         1 ~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~   80 (203)
                      |+++.++.++|+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++++...+..++..
T Consensus         1 M~~~~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   80 (183)
T 2fu5_C            1 MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG   80 (183)
T ss_dssp             --CCCSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTT
T ss_pred             CCcccCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhc
Confidence            66677889999999999999999999999888877777888888888888888888999999999999999999999999


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHH
Q 028792           81 AHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQ  160 (203)
Q Consensus        81 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  160 (203)
                      +|++++|||+++++++..+..|+..+......+.|+++|+||+|+.+.+.+..+++.+++..++++++++||++|.|+++
T Consensus        81 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  160 (183)
T 2fu5_C           81 AMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVEN  160 (183)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHH
T ss_pred             CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Confidence            99999999999999999999999998877666799999999999987777888899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcc
Q 028792          161 AFMAMAASIKNRMAS  175 (203)
Q Consensus       161 ~~~~l~~~~~~~~~~  175 (203)
                      +|.+|.+.+.++...
T Consensus       161 l~~~l~~~i~~~~~~  175 (183)
T 2fu5_C          161 AFFTLARDIKAKMDK  175 (183)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhc
Confidence            999999998876553

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=100.00  E-value=2e-35  Score=213.66  Aligned_cols=176  Identities=87%  Similarity=1.301  Sum_probs=159.7

Q ss_pred             CCCCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCC
Q 028792            2 NNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGA   81 (203)
Q Consensus         2 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~   81 (203)
                      +...++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||+.++...+..++..+
T Consensus        10 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   89 (196)
T 3tkl_A           10 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGA   89 (196)
T ss_dssp             -CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTC
T ss_pred             CcccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhC
Confidence            34567889999999999999999999999998888888888888888999999889999999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHH
Q 028792           82 HGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQA  161 (203)
Q Consensus        82 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~  161 (203)
                      |++++|+|++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..++..+++..++++++++||++|.|++++
T Consensus        90 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l  169 (196)
T 3tkl_A           90 HGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQS  169 (196)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHH
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHH
Confidence            99999999999999999999999998887778999999999999888888889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhccCC
Q 028792          162 FMAMAASIKNRMASQP  177 (203)
Q Consensus       162 ~~~l~~~~~~~~~~~~  177 (203)
                      |.+|.+.+.++.....
T Consensus       170 ~~~l~~~i~~~~~~~~  185 (196)
T 3tkl_A          170 FMTMAAEIKKRMGPGA  185 (196)
T ss_dssp             HHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHhcccc
Confidence            9999999988765433

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.4e-36  Score=222.32  Aligned_cols=171  Identities=50%  Similarity=0.813  Sum_probs=146.3

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEE
Q 028792            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI   84 (203)
Q Consensus         5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (203)
                      .++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++++...+..++..+|++
T Consensus        10 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v   89 (223)
T 3cpj_B           10 YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGA   89 (223)
T ss_dssp             CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEE
T ss_pred             CCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEE
Confidence            46789999999999999999999999988888788888888888888888889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHH
Q 028792           85 IVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMA  164 (203)
Q Consensus        85 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  164 (203)
                      |+|||++++.++..+..|+..+......+.|+++|+||+|+...+.+..+++..++...+++++++||++|.|++++|.+
T Consensus        90 ilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  169 (223)
T 3cpj_B           90 LIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEE  169 (223)
T ss_dssp             EEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHHH
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999988776667899999999999876677888899999999999999999999999999999


Q ss_pred             HHHHHHHHhcc
Q 028792          165 MAASIKNRMAS  175 (203)
Q Consensus       165 l~~~~~~~~~~  175 (203)
                      |.+.+.+....
T Consensus       170 l~~~i~~~~~~  180 (223)
T 3cpj_B          170 LINTIYQKVSK  180 (223)
T ss_dssp             HHHHHTTCC--
T ss_pred             HHHHHHHHhhh
Confidence            99998865444

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=100.00  E-value=1.6e-35  Score=212.41  Aligned_cols=177  Identities=47%  Similarity=0.823  Sum_probs=160.2

Q ss_pred             CCCCCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccC
Q 028792            1 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRG   80 (203)
Q Consensus         1 ~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~   80 (203)
                      |+++.++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++++...+..++..
T Consensus         3 m~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   82 (186)
T 2bme_A            3 MSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRG   82 (186)
T ss_dssp             -CCCCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTT
T ss_pred             cccccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhc
Confidence            56777899999999999999999999999998888888888888888888888888999999999999999999999999


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHH
Q 028792           81 AHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQ  160 (203)
Q Consensus        81 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  160 (203)
                      +|++|+|+|+++++++..+..|+..+......+.|+++|+||+|+...+.+..++..+++...+++++++||++|.|+++
T Consensus        83 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  162 (186)
T 2bme_A           83 AAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEE  162 (186)
T ss_dssp             CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred             CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHH
Confidence            99999999999999999999999888877666899999999999977667888888999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhccCC
Q 028792          161 AFMAMAASIKNRMASQP  177 (203)
Q Consensus       161 ~~~~l~~~~~~~~~~~~  177 (203)
                      +|.+|.+.+.++.....
T Consensus       163 l~~~l~~~~~~~~~~~~  179 (186)
T 2bme_A          163 AFVQCARKILNKIESGE  179 (186)
T ss_dssp             HHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHhhhcC
Confidence            99999999987765444

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=100.00  E-value=1.3e-35  Score=216.18  Aligned_cols=173  Identities=36%  Similarity=0.604  Sum_probs=150.3

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcE
Q 028792            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG   83 (203)
Q Consensus         4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   83 (203)
                      +....++|+|+|++|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+.+||+||+.++...+..++..+|+
T Consensus        10 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~   88 (206)
T 2bov_A           10 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG   88 (206)
T ss_dssp             -CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCE
Confidence            345679999999999999999999998888777777765444 4556678888899999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHH
Q 028792           84 IIVVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAF  162 (203)
Q Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~  162 (203)
                      +++|||+++++++..+..|+..+..... .+.|+++|+||+|+.+...+..+++.+++..++++++++||++|.|++++|
T Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~  168 (206)
T 2bov_A           89 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVF  168 (206)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHH
Confidence            9999999999999999999988877654 478999999999998777788889999999999999999999999999999


Q ss_pred             HHHHHHHHHHhccCC
Q 028792          163 MAMAASIKNRMASQP  177 (203)
Q Consensus       163 ~~l~~~~~~~~~~~~  177 (203)
                      .+|.+.+.++.....
T Consensus       169 ~~l~~~i~~~~~~~~  183 (206)
T 2bov_A          169 FDLMREIRARKMEDS  183 (206)
T ss_dssp             HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHcccccc
Confidence            999999987654433

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=100.00  E-value=3.9e-35  Score=209.28  Aligned_cols=175  Identities=61%  Similarity=0.954  Sum_probs=154.9

Q ss_pred             CCCCCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccC
Q 028792            1 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRG   80 (203)
Q Consensus         1 ~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~   80 (203)
                      |..+.+..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..++..
T Consensus         2 m~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~   81 (181)
T 3tw8_B            2 MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRG   81 (181)
T ss_dssp             ----CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTT
T ss_pred             CccccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhcc
Confidence            56677899999999999999999999999998888888888888888888899988999999999999999999999999


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHH
Q 028792           81 AHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQ  160 (203)
Q Consensus        81 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  160 (203)
                      +|++++|+|+++++++..+..|+..+..... +.|+++|+||+|+.+......++...++...+++++++||++|.|+++
T Consensus        82 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  160 (181)
T 3tw8_B           82 THGVIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEE  160 (181)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHHHCT-TSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHH
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHH
Confidence            9999999999999999999999998877654 689999999999987777888889999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhccC
Q 028792          161 AFMAMAASIKNRMASQ  176 (203)
Q Consensus       161 ~~~~l~~~~~~~~~~~  176 (203)
                      +|++|.+.+.+.+...
T Consensus       161 l~~~l~~~~~~~~~~~  176 (181)
T 3tw8_B          161 MFNCITELVLRAKKDN  176 (181)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhh
Confidence            9999999998776543

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=3.1e-35  Score=213.96  Aligned_cols=172  Identities=49%  Similarity=0.858  Sum_probs=157.0

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcE
Q 028792            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG   83 (203)
Q Consensus         4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   83 (203)
                      +.++.++|+++|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++++...+..++..+|+
T Consensus        22 ~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~  101 (201)
T 2ew1_A           22 DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANA  101 (201)
T ss_dssp             CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSE
T ss_pred             ccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCE
Confidence            56788999999999999999999999998888888888888888888899988999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHH
Q 028792           84 IIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFM  163 (203)
Q Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  163 (203)
                      +++|||+++++++..+..|+..+......+.|+++|+||+|+.+.+.+..+++.+++...+++++++||++|.|++++|.
T Consensus       102 ~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~  181 (201)
T 2ew1_A          102 LILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFL  181 (201)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            99999999999999999999998877666799999999999987677788888999999999999999999999999999


Q ss_pred             HHHHHHHHHhcc
Q 028792          164 AMAASIKNRMAS  175 (203)
Q Consensus       164 ~l~~~~~~~~~~  175 (203)
                      +|.+.+.++..+
T Consensus       182 ~l~~~i~~~~~~  193 (201)
T 2ew1_A          182 DLACRLISEARQ  193 (201)
T ss_dssp             HHHHHHHHHHC-
T ss_pred             HHHHHHHHHHhh
Confidence            999999876543

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=100.00  E-value=3.9e-35  Score=213.39  Aligned_cols=171  Identities=50%  Similarity=0.865  Sum_probs=147.0

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcE
Q 028792            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG   83 (203)
Q Consensus         4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   83 (203)
                      +.++.++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++++...+..++..+|+
T Consensus        25 ~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~  104 (201)
T 2hup_A           25 QYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANG  104 (201)
T ss_dssp             -CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSE
T ss_pred             ccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCE
Confidence            56778999999999999999999999988887777888878888888888888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-CEEEEecCCCCCHHHHH
Q 028792           84 IIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGI-PFMETSAKSATNVEQAF  162 (203)
Q Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~~  162 (203)
                      +|+|||+++++++..+..|+..+......+.|+++|+||+|+.+.+.+..+++.+++...++ +++++||++|.|++++|
T Consensus       105 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~  184 (201)
T 2hup_A          105 AILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAF  184 (201)
T ss_dssp             EEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHH
Confidence            99999999999999999999998877666799999999999987667888889999999999 99999999999999999


Q ss_pred             HHHHHHHHHHhc
Q 028792          163 MAMAASIKNRMA  174 (203)
Q Consensus       163 ~~l~~~~~~~~~  174 (203)
                      .+|.+.+.++..
T Consensus       185 ~~l~~~i~~~~~  196 (201)
T 2hup_A          185 LRVATELIMRHG  196 (201)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHhcc
Confidence            999999876543

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=100.00  E-value=7.4e-35  Score=210.17  Aligned_cols=172  Identities=52%  Similarity=0.857  Sum_probs=152.5

Q ss_pred             CCCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCc
Q 028792            3 NEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAH   82 (203)
Q Consensus         3 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d   82 (203)
                      ...++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++++...+..++..+|
T Consensus        16 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   95 (191)
T 2a5j_A           16 PRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAA   95 (191)
T ss_dssp             CTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCS
T ss_pred             cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCC
Confidence            35678899999999999999999999998888777788888888888888888899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHH
Q 028792           83 GIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAF  162 (203)
Q Consensus        83 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~  162 (203)
                      ++++|+|+++++++..+..|+..+......+.|+++|+||+|+.+.+.+..++..+++...+++++++||++|.|++++|
T Consensus        96 ~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  175 (191)
T 2a5j_A           96 GALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAF  175 (191)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            99999999999999999999999887766689999999999997766778888999999999999999999999999999


Q ss_pred             HHHHHHHHHHhc
Q 028792          163 MAMAASIKNRMA  174 (203)
Q Consensus       163 ~~l~~~~~~~~~  174 (203)
                      .+|.+.+.++..
T Consensus       176 ~~l~~~i~~~~~  187 (191)
T 2a5j_A          176 INTAKEIYRKIQ  187 (191)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999887654

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=100.00  E-value=1.4e-34  Score=208.27  Aligned_cols=170  Identities=51%  Similarity=0.930  Sum_probs=154.7

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcE
Q 028792            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG   83 (203)
Q Consensus         4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   83 (203)
                      ..++.++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++++...+..++..+|+
T Consensus        18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   97 (189)
T 2gf9_A           18 GSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMG   97 (189)
T ss_dssp             TCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSE
T ss_pred             ccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCE
Confidence            45678999999999999999999999988887777888888887888888888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHH
Q 028792           84 IIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFM  163 (203)
Q Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  163 (203)
                      +++|||++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..+++.+++...+++++++||++|.|++++|+
T Consensus        98 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~  177 (189)
T 2gf9_A           98 FLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFE  177 (189)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence            99999999999999999999988877656799999999999987677778889999999999999999999999999999


Q ss_pred             HHHHHHHHHh
Q 028792          164 AMAASIKNRM  173 (203)
Q Consensus       164 ~l~~~~~~~~  173 (203)
                      +|.+.+.++.
T Consensus       178 ~l~~~i~~~~  187 (189)
T 2gf9_A          178 RLVDVICEKM  187 (189)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999987654

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.7e-34  Score=205.93  Aligned_cols=171  Identities=51%  Similarity=0.944  Sum_probs=144.8

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhcCCCC-CCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCc
Q 028792            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYL-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAH   82 (203)
Q Consensus         4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d   82 (203)
                      ..+..++|+++|.+|+|||||+++|.+..+. ..+.++.+.++....+..++..+.+.+||+||++++...+..++..+|
T Consensus         6 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d   85 (180)
T 2g6b_A            6 FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAH   85 (180)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCS
T ss_pred             cCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCC
Confidence            4577899999999999999999999988875 456677887887777788888899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHH
Q 028792           83 GIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAF  162 (203)
Q Consensus        83 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~  162 (203)
                      ++++|+|++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..++..+++...+++++++||++|.|++++|
T Consensus        86 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  165 (180)
T 2g6b_A           86 ALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAF  165 (180)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence            99999999999999999999998887766679999999999998877788888999999999999999999999999999


Q ss_pred             HHHHHHHHHHhc
Q 028792          163 MAMAASIKNRMA  174 (203)
Q Consensus       163 ~~l~~~~~~~~~  174 (203)
                      .+|.+.+.++..
T Consensus       166 ~~l~~~~~~~~~  177 (180)
T 2g6b_A          166 TAIAKELKRRSM  177 (180)
T ss_dssp             HHHHHHHHC---
T ss_pred             HHHHHHHHHHhc
Confidence            999998875543

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=100.00  E-value=2.4e-34  Score=209.30  Aligned_cols=173  Identities=50%  Similarity=0.931  Sum_probs=157.2

Q ss_pred             CCCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCc
Q 028792            3 NEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAH   82 (203)
Q Consensus         3 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d   82 (203)
                      +..++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||.+++...+..++..+|
T Consensus         3 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   82 (203)
T 1zbd_A            3 HMFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAM   82 (203)
T ss_dssp             CSCSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCS
T ss_pred             cccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCC
Confidence            35678899999999999999999999999888887888888888888888888899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHH
Q 028792           83 GIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAF  162 (203)
Q Consensus        83 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~  162 (203)
                      ++|+|+|+++++++..+..|+..+......+.|+++|+||+|+.+.+.+..+++.+++..++++++++||++|.|++++|
T Consensus        83 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  162 (203)
T 1zbd_A           83 GFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTF  162 (203)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHH
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHH
Confidence            99999999999999999999999887766679999999999998877788888999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcc
Q 028792          163 MAMAASIKNRMAS  175 (203)
Q Consensus       163 ~~l~~~~~~~~~~  175 (203)
                      .+|.+.+.+....
T Consensus       163 ~~l~~~i~~~~~~  175 (203)
T 1zbd_A          163 ERLVDVICEKMSE  175 (203)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999988876543

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=100.00  E-value=5.2e-35  Score=206.73  Aligned_cols=168  Identities=36%  Similarity=0.732  Sum_probs=145.1

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcE
Q 028792            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG   83 (203)
Q Consensus         4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   83 (203)
                      ..++.++|+++|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++++...+..++..+|+
T Consensus         2 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~   81 (170)
T 1z08_A            2 SRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNG   81 (170)
T ss_dssp             --CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSE
T ss_pred             CCCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCE
Confidence            35678999999999999999999999988888788888888888888888888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHH
Q 028792           84 IIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFM  163 (203)
Q Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  163 (203)
                      +++|+|+++++++..+..|+..+......+.|+++|+||+|+.+.+.+..++..+++...+++++++||++|.|++++|+
T Consensus        82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  161 (170)
T 1z08_A           82 AILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFL  161 (170)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Confidence            99999999999999999999888776555789999999999987777888889999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 028792          164 AMAASIKN  171 (203)
Q Consensus       164 ~l~~~~~~  171 (203)
                      +|.+.+.+
T Consensus       162 ~l~~~~~~  169 (170)
T 1z08_A          162 DLCKRMIE  169 (170)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHhh
Confidence            99988753

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=100.00  E-value=1.1e-34  Score=206.61  Aligned_cols=169  Identities=49%  Similarity=0.891  Sum_probs=153.0

Q ss_pred             CCCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCc
Q 028792            3 NEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAH   82 (203)
Q Consensus         3 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d   82 (203)
                      ...++.++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++++...+..++..+|
T Consensus        10 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   89 (179)
T 1z0f_A           10 YNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAA   89 (179)
T ss_dssp             -CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCS
T ss_pred             cccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCC
Confidence            35678899999999999999999999998888777788888888888888888899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHH
Q 028792           83 GIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAF  162 (203)
Q Consensus        83 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~  162 (203)
                      ++++|+|++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..+++.+++..++++++++||++|.|++++|
T Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  169 (179)
T 1z0f_A           90 GALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAF  169 (179)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred             EEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            99999999999999999999998888776689999999999997767778888999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q 028792          163 MAMAASIKN  171 (203)
Q Consensus       163 ~~l~~~~~~  171 (203)
                      .+|.+.+.+
T Consensus       170 ~~l~~~i~~  178 (179)
T 1z0f_A          170 LEAAKKIYQ  178 (179)
T ss_dssp             HHHHHHHC-
T ss_pred             HHHHHHHhh
Confidence            999987753

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.5e-34  Score=208.78  Aligned_cols=172  Identities=44%  Similarity=0.764  Sum_probs=156.0

Q ss_pred             CCCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCc
Q 028792            3 NEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAH   82 (203)
Q Consensus         3 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d   82 (203)
                      ++.++.++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||..++...+..++..+|
T Consensus        20 ~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   99 (193)
T 2oil_A           20 EDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAV   99 (193)
T ss_dssp             CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCC
T ss_pred             cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCC
Confidence            45678899999999999999999999998888777788888888888888888899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHH
Q 028792           83 GIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAF  162 (203)
Q Consensus        83 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~  162 (203)
                      ++|+|+|++++.++..+..|+..+......+.|+++|+||+|+...+.+..++...++...+++++++||++|.|++++|
T Consensus       100 ~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  179 (193)
T 2oil_A          100 GALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAF  179 (193)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            99999999999999999999998877666679999999999998766778888999999999999999999999999999


Q ss_pred             HHHHHHHHHHhc
Q 028792          163 MAMAASIKNRMA  174 (203)
Q Consensus       163 ~~l~~~~~~~~~  174 (203)
                      .+|.+.+.++..
T Consensus       180 ~~l~~~i~~~~~  191 (193)
T 2oil_A          180 ETVLKEIFAKVS  191 (193)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhh
Confidence            999999887654

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=100.00  E-value=9.6e-35  Score=211.13  Aligned_cols=174  Identities=48%  Similarity=0.807  Sum_probs=146.9

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcE
Q 028792            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG   83 (203)
Q Consensus         4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   83 (203)
                      +.++.++|+|+|.+|+|||||+++|.++.+...+.++.+.++....+..++..+.+.+||+||+.++...+..++..+|+
T Consensus        21 ~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~  100 (200)
T 2o52_A           21 WSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAG  100 (200)
T ss_dssp             -CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSE
T ss_pred             ccCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCE
Confidence            45788999999999999999999999988888878888888888888888888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHH
Q 028792           84 IIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFM  163 (203)
Q Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  163 (203)
                      +|+|||++++.++..+..|+..+......+.|+++|+||+|+...+.+..++..+++...+++++++||++|.|++++|.
T Consensus       101 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~  180 (200)
T 2o52_A          101 ALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFL  180 (200)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            99999999999999999999988777666799999999999977667788888999999999999999999999999999


Q ss_pred             HHHHHHHHHhccCC
Q 028792          164 AMAASIKNRMASQP  177 (203)
Q Consensus       164 ~l~~~~~~~~~~~~  177 (203)
                      +|.+.+.++.....
T Consensus       181 ~l~~~i~~~~~~~~  194 (200)
T 2o52_A          181 KCARTILNKIDSGE  194 (200)
T ss_dssp             HHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHhcCC
Confidence            99999987665443

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=100.00  E-value=2e-34  Score=205.62  Aligned_cols=174  Identities=32%  Similarity=0.567  Sum_probs=152.1

Q ss_pred             CCCCCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccC
Q 028792            1 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRG   80 (203)
Q Consensus         1 ~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~   80 (203)
                      |..+.+..++|+++|.+|+|||||+++|.+..+...+.++.+..+. ..+..++..+.+.+||+||+.++...+..++..
T Consensus         2 m~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~   80 (181)
T 2fn4_A            2 MDPPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRA   80 (181)
T ss_dssp             --CCSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHH
T ss_pred             CCCCCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhh
Confidence            5566778899999999999999999999998887777777766655 666778888899999999999999999999999


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHH
Q 028792           81 AHGIIVVYDVTDQESFNNVKQWLNEIDRY-ASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVE  159 (203)
Q Consensus        81 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  159 (203)
                      +|++++|+|+++++++..+..|+..+... ...+.|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++
T Consensus        81 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~  160 (181)
T 2fn4_A           81 GHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVD  160 (181)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHH
T ss_pred             CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHH
Confidence            99999999999999999999998887443 44578999999999998777788888999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcc
Q 028792          160 QAFMAMAASIKNRMAS  175 (203)
Q Consensus       160 ~~~~~l~~~~~~~~~~  175 (203)
                      ++|++|.+.+.++...
T Consensus       161 ~l~~~l~~~~~~~~~~  176 (181)
T 2fn4_A          161 EAFEQLVRAVRKYQEQ  176 (181)
T ss_dssp             HHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhhcc
Confidence            9999999999876543

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.4e-35  Score=213.91  Aligned_cols=172  Identities=49%  Similarity=0.937  Sum_probs=156.9

Q ss_pred             CCCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCc
Q 028792            3 NEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAH   82 (203)
Q Consensus         3 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d   82 (203)
                      ++.++.+||+|+|.+|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..++..+|
T Consensus        18 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   97 (191)
T 3dz8_A           18 GNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAM   97 (191)
T ss_dssp             TEEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCC
T ss_pred             cccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCC
Confidence            45678899999999999999999999998888888788888888888888887899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHH
Q 028792           83 GIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAF  162 (203)
Q Consensus        83 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~  162 (203)
                      ++++|||+++++++..+..|+..+......+.|+++|+||+|+.+.+....++...++..++++++++||++|.|++++|
T Consensus        98 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  177 (191)
T 3dz8_A           98 GFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAF  177 (191)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHH
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHH
Confidence            99999999999999999999999988776689999999999998777888899999999999999999999999999999


Q ss_pred             HHHHHHHHHHhc
Q 028792          163 MAMAASIKNRMA  174 (203)
Q Consensus       163 ~~l~~~~~~~~~  174 (203)
                      ++|.+.+.++..
T Consensus       178 ~~l~~~i~~~~~  189 (191)
T 3dz8_A          178 ERLVDAICDKMS  189 (191)
T ss_dssp             HHHHHHHHHHC-
T ss_pred             HHHHHHHHHhcc
Confidence            999999887644

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=100.00  E-value=2.4e-34  Score=205.32  Aligned_cols=168  Identities=44%  Similarity=0.719  Sum_probs=152.0

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcE
Q 028792            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG   83 (203)
Q Consensus         4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   83 (203)
                      .....++|+++|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||+.++...+..++..+|+
T Consensus         8 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   87 (181)
T 2efe_B            8 NKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA   87 (181)
T ss_dssp             --CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSE
T ss_pred             CCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCE
Confidence            45678999999999999999999999998888877888888888888888888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHH
Q 028792           84 IIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFM  163 (203)
Q Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  163 (203)
                      +++|+|++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..+++.+++...+++++++||++|.|++++|.
T Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~  167 (181)
T 2efe_B           88 AIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFY  167 (181)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence            99999999999999999999998877666799999999999987777888899999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 028792          164 AMAASIKN  171 (203)
Q Consensus       164 ~l~~~~~~  171 (203)
                      +|.+.+.+
T Consensus       168 ~l~~~~~~  175 (181)
T 2efe_B          168 EIARRLPR  175 (181)
T ss_dssp             HHHHTCC-
T ss_pred             HHHHHHHh
Confidence            99887643

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=100.00  E-value=2e-34  Score=203.63  Aligned_cols=166  Identities=56%  Similarity=1.015  Sum_probs=144.1

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      ++.++|+++|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++++...+..++..+|+++
T Consensus         1 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   80 (170)
T 1g16_A            1 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGII   80 (170)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEE
T ss_pred             CCceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEE
Confidence            35799999999999999999999998888777888888888888888888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHH
Q 028792           86 VVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAM  165 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  165 (203)
                      +|+|++++.++..+..|+..+......+.|+++|+||+|+ .......++..++++..+++++++||++|.|++++|.+|
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l  159 (170)
T 1g16_A           81 LVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL  159 (170)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC-TTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccC-CcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence            9999999999999999999888776667999999999999 445567788889999999999999999999999999999


Q ss_pred             HHHHHHH
Q 028792          166 AASIKNR  172 (203)
Q Consensus       166 ~~~~~~~  172 (203)
                      .+.+.++
T Consensus       160 ~~~~~~~  166 (170)
T 1g16_A          160 AKLIQEK  166 (170)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHH
Confidence            9988764

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=100.00  E-value=4.5e-34  Score=204.48  Aligned_cols=168  Identities=35%  Similarity=0.589  Sum_probs=150.8

Q ss_pred             CCCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCc
Q 028792            3 NEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAH   82 (203)
Q Consensus         3 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d   82 (203)
                      ....+.++|+|+|++|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..++..+|
T Consensus        13 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d   91 (183)
T 3kkq_A           13 SENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGD   91 (183)
T ss_dssp             -CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCS
T ss_pred             ccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCC
Confidence            4566789999999999999999999999888888878777666 667778888889999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecC-CCCCHHH
Q 028792           83 GIIVVYDVTDQESFNNVKQWLNEIDRY-ASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAK-SATNVEQ  160 (203)
Q Consensus        83 ~~i~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~~~gi~~  160 (203)
                      ++++|||+++++++..+..|+..+... ...+.|+++|+||+|+.+.+.+..+++.+++..++++++++||+ +|.|+++
T Consensus        92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~  171 (183)
T 3kkq_A           92 GFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDK  171 (183)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHH
Confidence            999999999999999999999888654 33578999999999998888889999999999999999999999 9999999


Q ss_pred             HHHHHHHHHHH
Q 028792          161 AFMAMAASIKN  171 (203)
Q Consensus       161 ~~~~l~~~~~~  171 (203)
                      +|.+|.+.+.+
T Consensus       172 l~~~l~~~i~~  182 (183)
T 3kkq_A          172 TFHDLVRVIRQ  182 (183)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhh
Confidence            99999998865

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=100.00  E-value=4.5e-34  Score=205.95  Aligned_cols=172  Identities=41%  Similarity=0.795  Sum_probs=153.3

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeE-EEEEEECCe---------EEEEEEEeCCChhhhchh
Q 028792            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFK-IRTVEQDGK---------TIKLQIWDTAGQERFRTI   73 (203)
Q Consensus         4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~i~D~~g~~~~~~~   73 (203)
                      +.++.++|+|+|++|+|||||+++|.+..+...+.++.+.++. ...+..++.         .+.+.+||+||+.++...
T Consensus         7 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~   86 (195)
T 3bc1_A            7 DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSL   86 (195)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHH
T ss_pred             ccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHH
Confidence            6778899999999999999999999998888777788887776 556666655         689999999999999999


Q ss_pred             hhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEec
Q 028792           74 TSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSA  152 (203)
Q Consensus        74 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  152 (203)
                      +..++..+|++++|+|++++.++..+..|+..+..... .+.|+++|+||+|+.+.+.+..+++.+++...+++++++||
T Consensus        87 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  166 (195)
T 3bc1_A           87 TTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSA  166 (195)
T ss_dssp             HHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECCT
T ss_pred             HHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEEEC
Confidence            99999999999999999999999999999998877654 57899999999999876677888899999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHhcc
Q 028792          153 KSATNVEQAFMAMAASIKNRMAS  175 (203)
Q Consensus       153 ~~~~gi~~~~~~l~~~~~~~~~~  175 (203)
                      ++|.|++++|.+|.+.+.++..+
T Consensus       167 ~~~~~v~~l~~~l~~~~~~~~~~  189 (195)
T 3bc1_A          167 ANGTNISHAIEMLLDLIMKRMER  189 (195)
T ss_dssp             TTCTTHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHhhh
Confidence            99999999999999999876654

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=100.00  E-value=4e-34  Score=205.48  Aligned_cols=170  Identities=35%  Similarity=0.640  Sum_probs=145.5

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      ...++|+++|++|+|||||+++|.+..+...+.++.. +.....+..++..+.+.+||+||++++...+..++..+|+++
T Consensus         2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   80 (189)
T 4dsu_A            2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL   80 (189)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence            4679999999999999999999998887777666664 444566678888889999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHH
Q 028792           86 VVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMA  164 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  164 (203)
                      +|+|+++++++..+..|+..+..... .+.|+++|+||+|+.+ .....+....++..++++++++||++|.|++++|.+
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~  159 (189)
T 4dsu_A           81 CVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYT  159 (189)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSS-CSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcc-cccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999988877543 5799999999999874 456678888999999999999999999999999999


Q ss_pred             HHHHHHHHhccCC
Q 028792          165 MAASIKNRMASQP  177 (203)
Q Consensus       165 l~~~~~~~~~~~~  177 (203)
                      |.+.+.+.....+
T Consensus       160 l~~~~~~~~~~~~  172 (189)
T 4dsu_A          160 LVREIRKHKEKMS  172 (189)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhcc
Confidence            9999987766543

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=100.00  E-value=4.8e-34  Score=203.99  Aligned_cols=168  Identities=30%  Similarity=0.487  Sum_probs=149.1

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      .+.++|+++|.+|+|||||+++|.++.+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..++..+|+++
T Consensus         4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i   82 (181)
T 3t5g_A            4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI   82 (181)
T ss_dssp             EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEE
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEE
Confidence            4689999999999999999999998888888778877666 667778888899999999999999888999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHH
Q 028792           86 VVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMA  164 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  164 (203)
                      +|||++++++++.+..|+..+..... .+.|+++|+||+|+.+.+.+..+++.+++..++++++++||++|.|++++|.+
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~  162 (181)
T 3t5g_A           83 LVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRR  162 (181)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHH
Confidence            99999999999999999988865543 47899999999999888888999999999999999999999999999999999


Q ss_pred             HHHHHHHHhc
Q 028792          165 MAASIKNRMA  174 (203)
Q Consensus       165 l~~~~~~~~~  174 (203)
                      |.+.+.+...
T Consensus       163 l~~~~~~~~~  172 (181)
T 3t5g_A          163 IILEAEKMDG  172 (181)
T ss_dssp             HHHHHHTC--
T ss_pred             HHHHHHHhcC
Confidence            9999876554

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.7e-34  Score=208.45  Aligned_cols=170  Identities=48%  Similarity=0.878  Sum_probs=146.7

Q ss_pred             CCCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCc
Q 028792            3 NEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAH   82 (203)
Q Consensus         3 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d   82 (203)
                      .+.++.++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||+.++...+..++..+|
T Consensus        21 ~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d  100 (192)
T 2il1_A           21 RPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAK  100 (192)
T ss_dssp             -CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCS
T ss_pred             cccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCC
Confidence            45678899999999999999999999998888777888888888888888888899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHc-CCCEEEEecCCCCCHHHH
Q 028792           83 GIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEI-GIPFMETSAKSATNVEQA  161 (203)
Q Consensus        83 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~~  161 (203)
                      ++|+|+|++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..++..+++... +++++++||++|.|++++
T Consensus       101 ~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l  180 (192)
T 2il1_A          101 GIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEI  180 (192)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHH
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHH
Confidence            9999999999999999999998888777668999999999999876777888888888875 789999999999999999


Q ss_pred             HHHHHHHHHHH
Q 028792          162 FMAMAASIKNR  172 (203)
Q Consensus       162 ~~~l~~~~~~~  172 (203)
                      |.+|.+.+.++
T Consensus       181 ~~~l~~~i~~~  191 (192)
T 2il1_A          181 FLKLVDDILKK  191 (192)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHh
Confidence            99999988653

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=100.00  E-value=6.6e-34  Score=200.94  Aligned_cols=166  Identities=40%  Similarity=0.701  Sum_probs=151.7

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcE
Q 028792            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG   83 (203)
Q Consensus         4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   83 (203)
                      ..++.++|+++|++|+|||||+++|.+..+...+.++.+.++....+..++....+.+||+||.+++...+..++..+|+
T Consensus         2 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~   81 (170)
T 1z0j_A            2 SALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAA   81 (170)
T ss_dssp             CSEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSE
T ss_pred             CCCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCE
Confidence            35678999999999999999999999998888888888888888888888888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHH
Q 028792           84 IIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFM  163 (203)
Q Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  163 (203)
                      +++|+|++++.++..+..|+..+........|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|.
T Consensus        82 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  161 (170)
T 1z0j_A           82 AIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFI  161 (170)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHH
Confidence            99999999999999999999998887666799999999999987777788889999999999999999999999999999


Q ss_pred             HHHHHH
Q 028792          164 AMAASI  169 (203)
Q Consensus       164 ~l~~~~  169 (203)
                      +|.+.+
T Consensus       162 ~i~~~i  167 (170)
T 1z0j_A          162 EISRRI  167 (170)
T ss_dssp             HHHHHC
T ss_pred             HHHHHH
Confidence            998865

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.5e-34  Score=208.78  Aligned_cols=169  Identities=40%  Similarity=0.693  Sum_probs=151.2

Q ss_pred             CCCCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCC
Q 028792            2 NNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGA   81 (203)
Q Consensus         2 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~   81 (203)
                      .+..++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++++...+..++..+
T Consensus        17 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   96 (192)
T 2fg5_A           17 RGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGS   96 (192)
T ss_dssp             ----CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTC
T ss_pred             ccccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccC
Confidence            34567889999999999999999999999888777788888888888888888889999999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHH
Q 028792           82 HGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQA  161 (203)
Q Consensus        82 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~  161 (203)
                      |++++|+|+++++++..+..|+..+......+.|+++|+||+|+.+.+.+..+++.+++...+++++++||++|.|++++
T Consensus        97 d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  176 (192)
T 2fg5_A           97 AAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEEL  176 (192)
T ss_dssp             SEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHH
T ss_pred             CEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHH
Confidence            99999999999999999999999988776667999999999999766677888899999999999999999999999999


Q ss_pred             HHHHHHHHH
Q 028792          162 FMAMAASIK  170 (203)
Q Consensus       162 ~~~l~~~~~  170 (203)
                      |.+|.+.+.
T Consensus       177 ~~~l~~~i~  185 (192)
T 2fg5_A          177 FQGISRQIP  185 (192)
T ss_dssp             HHHHHHTCC
T ss_pred             HHHHHHHHH
Confidence            999988663

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=100.00  E-value=3.8e-34  Score=202.08  Aligned_cols=165  Identities=47%  Similarity=0.781  Sum_probs=150.1

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEE
Q 028792            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI   84 (203)
Q Consensus         5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (203)
                      ..+.++|+++|++|+|||||+++|.++.+...+.++.+.++....+..++..+.+.+||+||+.++...+..++..+|++
T Consensus         3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~   82 (170)
T 1r2q_A            3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA   82 (170)
T ss_dssp             EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence            45789999999999999999999999888887778888888888888888889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHH
Q 028792           85 IVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMA  164 (203)
Q Consensus        85 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  164 (203)
                      ++|+|+++++++..+..|+..+......+.|+++|+||+|+.+.+.+..++..+++...+++++++||++|.|++++|++
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~  162 (170)
T 1r2q_A           83 IVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMA  162 (170)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999888776667999999999999776677788889999999999999999999999999999


Q ss_pred             HHHHH
Q 028792          165 MAASI  169 (203)
Q Consensus       165 l~~~~  169 (203)
                      |.+.+
T Consensus       163 i~~~~  167 (170)
T 1r2q_A          163 IAKKL  167 (170)
T ss_dssp             HHHTS
T ss_pred             HHHHH
Confidence            98765

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=100.00  E-value=1.3e-34  Score=212.07  Aligned_cols=169  Identities=30%  Similarity=0.602  Sum_probs=142.1

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      .+.++|+++|++|+|||||+++|.++.+...+.++.+..+ ...+..++..+.+.+||+||++++...+..++..+|+++
T Consensus         7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   85 (212)
T 2j0v_A            7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   85 (212)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence            4679999999999999999999998888777777776444 345667788899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCcc--------cCHHHHHHHHHHcCC-CEEEEecCCC
Q 028792           86 VVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTANKV--------VSYETAKAFADEIGI-PFMETSAKSA  155 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~--------~~~~~~~~~~~~~~~-~~~~~Sa~~~  155 (203)
                      +|||+++++++..+. .|+..+..... +.|+++|+||+|+.+...        +..+++.+++..+++ +++++||++|
T Consensus        86 lv~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g  164 (212)
T 2j0v_A           86 LAFSLISKASYENVLKKWMPELRRFAP-NVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQ  164 (212)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCT-TCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCCC
Confidence            999999999999987 68888877654 689999999999876543        367888889998886 9999999999


Q ss_pred             CCHHHHHHHHHHHHHHHhccC
Q 028792          156 TNVEQAFMAMAASIKNRMASQ  176 (203)
Q Consensus       156 ~gi~~~~~~l~~~~~~~~~~~  176 (203)
                      +|++++|.+|.+.+.+.....
T Consensus       165 ~gi~~l~~~l~~~~~~~~~~~  185 (212)
T 2j0v_A          165 QNVKAVFDTAIKVVLQPPRRK  185 (212)
T ss_dssp             TTHHHHHHHHHHHHHCC----
T ss_pred             CCHHHHHHHHHHHHhhhhhhc
Confidence            999999999999988655443

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=100.00  E-value=5.7e-34  Score=203.37  Aligned_cols=174  Identities=41%  Similarity=0.687  Sum_probs=135.2

Q ss_pred             CCCCCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEEC-CeEEEEEEEeCCChhhhchhhhcccc
Q 028792            1 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQD-GKTIKLQIWDTAGQERFRTITSSYYR   79 (203)
Q Consensus         1 ~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~   79 (203)
                      |+.+....++|+++|++|+|||||+++|.+..+...+.++.+.++....+..+ +....+.+||+||++.+...+..++.
T Consensus         1 Ms~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   80 (182)
T 1ky3_A            1 MSSRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYR   80 (182)
T ss_dssp             ------CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCST
T ss_pred             CCcccCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhh
Confidence            56667789999999999999999999999988888878888777887777776 55688999999999999999999999


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC----CCCcEEEEEeCCCCCCC-cccCHHHHHHHHH-HcCCCEEEEecC
Q 028792           80 GAHGIIVVYDVTDQESFNNVKQWLNEIDRYAS----ENVNKLLVGNKCDLTAN-KVVSYETAKAFAD-EIGIPFMETSAK  153 (203)
Q Consensus        80 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~----~~~p~iiv~nK~D~~~~-~~~~~~~~~~~~~-~~~~~~~~~Sa~  153 (203)
                      .+|++++|+|++++.++..+..|+..+.....    .+.|+++|+||+|+... +.+..+++.+++. ..+++++++||+
T Consensus        81 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~  160 (182)
T 1ky3_A           81 GADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAK  160 (182)
T ss_dssp             TCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTT
T ss_pred             cCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecC
Confidence            99999999999999999999999988866543    57899999999998543 4567788888887 456899999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHhc
Q 028792          154 SATNVEQAFMAMAASIKNRMA  174 (203)
Q Consensus       154 ~~~gi~~~~~~l~~~~~~~~~  174 (203)
                      +|.|++++|.+|.+.+.+++.
T Consensus       161 ~~~gi~~l~~~l~~~~~~~~~  181 (182)
T 1ky3_A          161 NAINVDTAFEEIARSALQQNQ  181 (182)
T ss_dssp             TTBSHHHHHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHHHHhhc
Confidence            999999999999999886643

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.4e-33  Score=203.69  Aligned_cols=173  Identities=47%  Similarity=0.813  Sum_probs=153.0

Q ss_pred             CCCCCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccC
Q 028792            1 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRG   80 (203)
Q Consensus         1 ~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~   80 (203)
                      |+++....++|+|+|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||+.++...+..++..
T Consensus         8 ~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~   87 (195)
T 1x3s_A            8 MDEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRG   87 (195)
T ss_dssp             -CTTEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTT
T ss_pred             cccCCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhcc
Confidence            34555678999999999999999999999998888888888888888888888888999999999999999999999999


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHH
Q 028792           81 AHGIIVVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVE  159 (203)
Q Consensus        81 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  159 (203)
                      +|++++|+|++++.++..+..|+..+..... .+.|+++|+||+|+. ...+..++..+++...+++++++||+++.|++
T Consensus        88 ~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  166 (195)
T 1x3s_A           88 AQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE-NREVDRNEGLKFARKHSMLFIEASAKTCDGVQ  166 (195)
T ss_dssp             CCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS-SCCSCHHHHHHHHHHTTCEEEECCTTTCTTHH
T ss_pred             CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc-ccccCHHHHHHHHHHcCCEEEEecCCCCCCHH
Confidence            9999999999999999999999888876543 468999999999984 34567788889999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhc
Q 028792          160 QAFMAMAASIKNRMA  174 (203)
Q Consensus       160 ~~~~~l~~~~~~~~~  174 (203)
                      ++|.+|.+.+.+...
T Consensus       167 ~l~~~l~~~~~~~~~  181 (195)
T 1x3s_A          167 CAFEELVEKIIQTPG  181 (195)
T ss_dssp             HHHHHHHHHHHTSGG
T ss_pred             HHHHHHHHHHHhhhh
Confidence            999999999886543

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=100.00  E-value=4e-34  Score=201.66  Aligned_cols=165  Identities=33%  Similarity=0.633  Sum_probs=149.7

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      ++.++|+++|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||+.++...+..++..+|+++
T Consensus         3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   82 (168)
T 1z2a_A            3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV   82 (168)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence            57899999999999999999999998888888888888888888888888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHH
Q 028792           86 VVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAM  165 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  165 (203)
                      +|+|+++++++..+..|+..+.... .+.|+++|+||+|+.+.+.+..+++.+++...+++++++||++|.|++++|.+|
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  161 (168)
T 1z2a_A           83 LVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYL  161 (168)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Confidence            9999999999999999998887665 468999999999998766777888899999999999999999999999999999


Q ss_pred             HHHHHH
Q 028792          166 AASIKN  171 (203)
Q Consensus       166 ~~~~~~  171 (203)
                      .+.+.+
T Consensus       162 ~~~~~~  167 (168)
T 1z2a_A          162 AEKHLQ  167 (168)
T ss_dssp             HHHHHC
T ss_pred             HHHHhh
Confidence            988763

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=7.7e-34  Score=200.49  Aligned_cols=163  Identities=40%  Similarity=0.716  Sum_probs=148.1

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEE
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV   86 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (203)
                      +.++|+++|++|+|||||+++|.++.+...+.++.+.++....+..++..+.+.+||+||+.++...+..++..+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1ek0_A            2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence            46899999999999999999999988888888888888888888888888999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC---cccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHH
Q 028792           87 VYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN---KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFM  163 (203)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  163 (203)
                      |+|++++.++..+..|+..+......+.|+++|+||+|+...   ..+..++..+++...+++++++||++|.|++++|.
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  161 (170)
T 1ek0_A           82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL  161 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred             EEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            999999999999999999888776667999999999998765   56777888899999999999999999999999999


Q ss_pred             HHHHHH
Q 028792          164 AMAASI  169 (203)
Q Consensus       164 ~l~~~~  169 (203)
                      +|.+.+
T Consensus       162 ~l~~~i  167 (170)
T 1ek0_A          162 GIGEKI  167 (170)
T ss_dssp             HHHTTS
T ss_pred             HHHHHH
Confidence            998754

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2.8e-34  Score=208.07  Aligned_cols=167  Identities=32%  Similarity=0.510  Sum_probs=142.5

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      ...++|+++|.+|+|||||+++|.++.+...+.++.+..+. ..+..++..+.+.+||+||+.++...+..++..+|+++
T Consensus         6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   84 (199)
T 2gf0_A            6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI   84 (199)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred             CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence            46799999999999999999999998887776677654443 44567777889999999999999888999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHH
Q 028792           86 VVYDVTDQESFNNVKQWLNEIDRYAS--ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFM  163 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  163 (203)
                      +|||+++++++..+..|+..+.....  .+.|+++|+||+|+.+ .....++...++..++++++++||++|.|++++|.
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  163 (199)
T 2gf0_A           85 LVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQ  163 (199)
T ss_dssp             EEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS-CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc-cccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Confidence            99999999999998888877766543  3689999999999875 45667788888889999999999999999999999


Q ss_pred             HHHHHHHHHhc
Q 028792          164 AMAASIKNRMA  174 (203)
Q Consensus       164 ~l~~~~~~~~~  174 (203)
                      +|.+.+.++..
T Consensus       164 ~l~~~~~~~~~  174 (199)
T 2gf0_A          164 ELLTLETRRNM  174 (199)
T ss_dssp             HHHHHCSSSCE
T ss_pred             HHHHHHhhhhc
Confidence            99987765443

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=100.00  E-value=6.2e-34  Score=206.11  Aligned_cols=171  Identities=27%  Similarity=0.356  Sum_probs=143.8

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhch-hhhccccCCc
Q 028792            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT-ITSSYYRGAH   82 (203)
Q Consensus         4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~~d   82 (203)
                      +.+..++|+|+|++|||||||+++|.+........++.+.+.....+.+++..+.+.+||++|...+.. ++..++..+|
T Consensus        19 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d   98 (195)
T 3cbq_A           19 QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGD   98 (195)
T ss_dssp             ---CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCS
T ss_pred             CCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCC
Confidence            456789999999999999999999986544333445555566667778889889999999999987665 6777889999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHH
Q 028792           83 GIIVVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQA  161 (203)
Q Consensus        83 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~  161 (203)
                      ++|+|||+++++++..+..|+..+..... .+.|+++|+||+|+.+.+.+..++..+++...+++++++||++|.|++++
T Consensus        99 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~l  178 (195)
T 3cbq_A           99 AFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTREL  178 (195)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHH
Confidence            99999999999999999999988876653 47899999999999877778888899999999999999999999999999


Q ss_pred             HHHHHHHHHHHhc
Q 028792          162 FMAMAASIKNRMA  174 (203)
Q Consensus       162 ~~~l~~~~~~~~~  174 (203)
                      |.+|.+.+.+.+.
T Consensus       179 f~~l~~~i~~~~~  191 (195)
T 3cbq_A          179 FEGAVRQIRLRRG  191 (195)
T ss_dssp             HHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHhcC
Confidence            9999998865443

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=100.00  E-value=2.5e-33  Score=198.93  Aligned_cols=169  Identities=30%  Similarity=0.431  Sum_probs=136.6

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhh--hchhhhccccCCcE
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER--FRTITSSYYRGAHG   83 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--~~~~~~~~~~~~d~   83 (203)
                      ++.++|+++|++|+|||||+++|.+..+...+ ++.+.++....+.+++..+.+.+||+||...  +......++..+|+
T Consensus         2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~   80 (175)
T 2nzj_A            2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA   80 (175)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHCC-----C-CCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred             ceEEEEEEECCCCccHHHHHHHHhcCCCcccc-CccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence            46799999999999999999999988776543 3455566677778888888999999999887  56666778899999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHH
Q 028792           84 IIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAF  162 (203)
Q Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~  162 (203)
                      +++|||+++++++..+..|+..+.... ..+.|+++|+||+|+.+.+.+..++...++..++++++++||++|.|++++|
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~  160 (175)
T 2nzj_A           81 YVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF  160 (175)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Confidence            999999999999999999988887653 3478999999999998877788888888998999999999999999999999


Q ss_pred             HHHHHHHHHHhcc
Q 028792          163 MAMAASIKNRMAS  175 (203)
Q Consensus       163 ~~l~~~~~~~~~~  175 (203)
                      .+|.+.+..++..
T Consensus       161 ~~l~~~~~~~~~~  173 (175)
T 2nzj_A          161 EGVVRQLRLRRRD  173 (175)
T ss_dssp             HHHHHHHHHHHC-
T ss_pred             HHHHHHHHHhhcc
Confidence            9999998776553

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=100.00  E-value=3.5e-33  Score=198.65  Aligned_cols=167  Identities=40%  Similarity=0.709  Sum_probs=145.8

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcE
Q 028792            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG   83 (203)
Q Consensus         4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   83 (203)
                      +.+..++|+++|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||+.++...+..++..+|+
T Consensus         3 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   82 (177)
T 1wms_A            3 GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDC   82 (177)
T ss_dssp             CCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSE
T ss_pred             CccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCE
Confidence            35678999999999999999999999988888888888888888888889888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhcC----CCCcEEEEEeCCCCCCCcccCHHHHHHHHH-HcCCCEEEEecCCCCCH
Q 028792           84 IIVVYDVTDQESFNNVKQWLNEIDRYAS----ENVNKLLVGNKCDLTANKVVSYETAKAFAD-EIGIPFMETSAKSATNV  158 (203)
Q Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi  158 (203)
                      +++|+|++++.++..+..|+..+.....    .+.|+++|+||+|+. ......+++.+++. ..+++++++||++|.|+
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  161 (177)
T 1wms_A           83 CLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNV  161 (177)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCH
Confidence            9999999999999999999988876543    578999999999987 45667788888888 55689999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 028792          159 EQAFMAMAASIKN  171 (203)
Q Consensus       159 ~~~~~~l~~~~~~  171 (203)
                      +++|.+|.+.+.+
T Consensus       162 ~~l~~~l~~~~~~  174 (177)
T 1wms_A          162 AAAFEEAVRRVLA  174 (177)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998864

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=100.00  E-value=2.8e-34  Score=204.48  Aligned_cols=168  Identities=33%  Similarity=0.536  Sum_probs=147.2

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECC-eEEEEEEEeCCChhhhchhhhccccCCcE
Q 028792            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDG-KTIKLQIWDTAGQERFRTITSSYYRGAHG   83 (203)
Q Consensus         5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   83 (203)
                      ..+.++|+++|++|+|||||+++|.+..+...+.++.+.++....+..++ ..+.+.+||+||++.+...+..++..+|+
T Consensus         3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   82 (178)
T 2hxs_A            3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG   82 (178)
T ss_dssp             CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence            45789999999999999999999999888777777887778888888776 57899999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCc-EEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHH
Q 028792           84 IIVVYDVTDQESFNNVKQWLNEIDRYAS--ENVN-KLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQ  160 (203)
Q Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~p-~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  160 (203)
                      +++|+|+++++++..+..|+..+.....  ...| +++|+||+|+.+.+.+..++..+++...+++++++||++|.|+++
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  162 (178)
T 2hxs_A           83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFL  162 (178)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Confidence            9999999999999999999888866432  1345 899999999977667788889999999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 028792          161 AFMAMAASIKNR  172 (203)
Q Consensus       161 ~~~~l~~~~~~~  172 (203)
                      +|.+|.+.+.+.
T Consensus       163 l~~~l~~~~~~~  174 (178)
T 2hxs_A          163 CFQKVAAEILGI  174 (178)
T ss_dssp             HHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhh
Confidence            999999988543

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=3.6e-33  Score=204.33  Aligned_cols=173  Identities=55%  Similarity=0.996  Sum_probs=152.5

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcE
Q 028792            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG   83 (203)
Q Consensus         4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   83 (203)
                      +.+..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||+..+...+..++..+|+
T Consensus        16 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   95 (213)
T 3cph_A           16 SYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMG   95 (213)
T ss_dssp             ----CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSE
T ss_pred             CCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCE
Confidence            34567999999999999999999999988888888888888888888888888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHH
Q 028792           84 IIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFM  163 (203)
Q Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  163 (203)
                      +++|||++++.++..+..|+..+......+.|+++|+||+|+ .......++..+++..++++++++||++|.|++++|.
T Consensus        96 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  174 (213)
T 3cph_A           96 IILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFF  174 (213)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTC-SSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC-cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            999999999999999999999888776667899999999999 4456677888889999999999999999999999999


Q ss_pred             HHHHHHHHHhccCC
Q 028792          164 AMAASIKNRMASQP  177 (203)
Q Consensus       164 ~l~~~~~~~~~~~~  177 (203)
                      +|.+.+.+......
T Consensus       175 ~l~~~~~~~~~~~~  188 (213)
T 3cph_A          175 TLAKLIQEKIDSNK  188 (213)
T ss_dssp             HHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHhhhh
Confidence            99999887765443

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=100.00  E-value=5.3e-34  Score=209.53  Aligned_cols=173  Identities=43%  Similarity=0.820  Sum_probs=151.6

Q ss_pred             CCCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCe----------EEEEEEEeCCChhhhch
Q 028792            3 NEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGK----------TIKLQIWDTAGQERFRT   72 (203)
Q Consensus         3 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~i~D~~g~~~~~~   72 (203)
                      .+.++.++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++.          .+.+.+||+||++++..
T Consensus        20 ~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~   99 (217)
T 2f7s_A           20 GDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRS   99 (217)
T ss_dssp             -CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHH
T ss_pred             CCcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHh
Confidence            35678899999999999999999999998887777778777777777777665          68899999999999999


Q ss_pred             hhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEe
Q 028792           73 ITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETS  151 (203)
Q Consensus        73 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S  151 (203)
                      .+..++..+|++|+|||++++.++..+..|+..+..... .+.|+++|+||+|+.+.+.+..+++.+++...+++++++|
T Consensus       100 ~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S  179 (217)
T 2f7s_A          100 LTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETS  179 (217)
T ss_dssp             HHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEB
T ss_pred             HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEE
Confidence            999999999999999999999999999998877755443 5789999999999987667788889999999999999999


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHhcc
Q 028792          152 AKSATNVEQAFMAMAASIKNRMAS  175 (203)
Q Consensus       152 a~~~~gi~~~~~~l~~~~~~~~~~  175 (203)
                      |++|.|++++|.+|.+.+.++...
T Consensus       180 a~~g~gi~~l~~~l~~~i~~~~~~  203 (217)
T 2f7s_A          180 AATGQNVEKAVETLLDLIMKRMEQ  203 (217)
T ss_dssp             TTTTBTHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHhhc
Confidence            999999999999999998876544

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=100.00  E-value=1.2e-33  Score=199.55  Aligned_cols=165  Identities=27%  Similarity=0.369  Sum_probs=133.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhch-hhhccccCCcEEEE
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT-ITSSYYRGAHGIIV   86 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~~d~~i~   86 (203)
                      .++|+++|++|+|||||+++|.+........++.+.+.....+..++..+.+.+||+||+.++.. .+..++..+|++++
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~   81 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI   81 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence            58999999999999999999998777666666666777778888899899999999999988766 66777889999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHH
Q 028792           87 VYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAM  165 (203)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  165 (203)
                      |||+++++++..+..|+..+..... .+.|+++|+||+|+.+.+.+..++..+++...+++++++||++|.|++++|++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  161 (169)
T 3q85_A           82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA  161 (169)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHH
Confidence            9999999999999999998877654 479999999999998777888999999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 028792          166 AASIKNR  172 (203)
Q Consensus       166 ~~~~~~~  172 (203)
                      .+.+..+
T Consensus       162 ~~~i~~~  168 (169)
T 3q85_A          162 VRQIRLR  168 (169)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhc
Confidence            9988764

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=100.00  E-value=9.1e-34  Score=201.80  Aligned_cols=165  Identities=41%  Similarity=0.709  Sum_probs=150.2

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      ...++|+|+|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||+.++...+..++..+|+++
T Consensus        12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i   91 (179)
T 2y8e_A           12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAV   91 (179)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence            45699999999999999999999998888888888888888888888988899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHH
Q 028792           86 VVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAM  165 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  165 (203)
                      +|+|++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|.+|
T Consensus        92 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  171 (179)
T 2y8e_A           92 VVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV  171 (179)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999988877666679999999999998777778888889999999999999999999999999999


Q ss_pred             HHHHH
Q 028792          166 AASIK  170 (203)
Q Consensus       166 ~~~~~  170 (203)
                      .+.+.
T Consensus       172 ~~~~~  176 (179)
T 2y8e_A          172 AAALP  176 (179)
T ss_dssp             HHTCC
T ss_pred             HHHHh
Confidence            88653

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=100.00  E-value=8.3e-34  Score=208.63  Aligned_cols=184  Identities=29%  Similarity=0.469  Sum_probs=153.9

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECC-eEEEEEEEeCCChhhhchhhhccccCCc
Q 028792            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDG-KTIKLQIWDTAGQERFRTITSSYYRGAH   82 (203)
Q Consensus         4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~d   82 (203)
                      ..+..++|+|+|.+|+|||||+++|+++.+...+.++.+.......+...+ ..+.+.+||+||+..+...+..++..+|
T Consensus         7 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   86 (218)
T 4djt_A            7 RRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGAS   86 (218)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCS
T ss_pred             cccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCC
Confidence            345789999999999999999999998888777777777666666665543 3488999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHH
Q 028792           83 GIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAF  162 (203)
Q Consensus        83 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~  162 (203)
                      ++++|+|++++.++..+..|+..+......+.|+++|+||+|+.+...+..+....++...+++++++||++|.|++++|
T Consensus        87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~  166 (218)
T 4djt_A           87 GAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPF  166 (218)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHH
T ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHH
Confidence            99999999999999999999999988777679999999999998777788888888988899999999999999999999


Q ss_pred             HHHHHHHHHHhccCCCCCCCCCCcc
Q 028792          163 MAMAASIKNRMASQPASNNARPPTV  187 (203)
Q Consensus       163 ~~l~~~~~~~~~~~~~~~~~~~~~~  187 (203)
                      .+|.+.+.+..........+..+..
T Consensus       167 ~~l~~~~~~~~~~~~~~~~~~~~~~  191 (218)
T 4djt_A          167 LHLARIFTGRPDLIFVSNVNLEPTE  191 (218)
T ss_dssp             HHHHHHHHCCTTCCBCSCCCCCBCC
T ss_pred             HHHHHHHhcccccccccccCcCCCc
Confidence            9999999888777665544443333

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=100.00  E-value=2e-33  Score=202.23  Aligned_cols=166  Identities=44%  Similarity=0.831  Sum_probs=146.5

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhc-hhhhccccCCcE
Q 028792            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR-TITSSYYRGAHG   83 (203)
Q Consensus         5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-~~~~~~~~~~d~   83 (203)
                      ..+.++|+|+|.+|+|||||+++|.++.+...+.++.+.++....+..++..+.+.+||+||.+++. ..+..++..+|+
T Consensus        17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~   96 (189)
T 1z06_A           17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHA   96 (189)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCE
Confidence            4567999999999999999999999988888888888888888888888888999999999999888 788889999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCC---CCHH
Q 028792           84 IIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSA---TNVE  159 (203)
Q Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~---~gi~  159 (203)
                      +++|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+.+.+..++..+++...+++++++||+++   .|++
T Consensus        97 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~  176 (189)
T 1z06_A           97 VVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVE  176 (189)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHH
Confidence            999999999999999999999887765 457999999999999777777888899999999999999999999   9999


Q ss_pred             HHHHHHHHHHH
Q 028792          160 QAFMAMAASIK  170 (203)
Q Consensus       160 ~~~~~l~~~~~  170 (203)
                      ++|.+|.+.+.
T Consensus       177 ~l~~~l~~~i~  187 (189)
T 1z06_A          177 AIFMTLAHKLK  187 (189)
T ss_dssp             HHHHHHC----
T ss_pred             HHHHHHHHHHh
Confidence            99999988764

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=100.00  E-value=7.1e-34  Score=206.31  Aligned_cols=168  Identities=41%  Similarity=0.721  Sum_probs=138.5

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcE
Q 028792            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG   83 (203)
Q Consensus         4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   83 (203)
                      ..++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++++...+..++..+|+
T Consensus        24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~  103 (199)
T 2p5s_A           24 SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADG  103 (199)
T ss_dssp             ----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSE
T ss_pred             CcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCE
Confidence            34567999999999999999999999988877777888878888888889888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC------CCcccCHHHHHHHHHHcCCCEEEEecCCCCC
Q 028792           84 IIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLT------ANKVVSYETAKAFADEIGIPFMETSAKSATN  157 (203)
Q Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  157 (203)
                      +|+|||++++.++..+..|+..+......+.|+++|+||+|+.      ..+.+..++...++...+++++++||++|.|
T Consensus       104 iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~g  183 (199)
T 2p5s_A          104 VLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSN  183 (199)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTT
T ss_pred             EEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCC
Confidence            9999999999999999999998887766679999999999986      3456778888899999999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 028792          158 VEQAFMAMAASIKN  171 (203)
Q Consensus       158 i~~~~~~l~~~~~~  171 (203)
                      ++++|.+|.+.+.+
T Consensus       184 v~el~~~l~~~i~~  197 (199)
T 2p5s_A          184 IVEAVLHLAREVKK  197 (199)
T ss_dssp             HHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999988753

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=100.00  E-value=6.1e-33  Score=200.51  Aligned_cols=168  Identities=26%  Similarity=0.544  Sum_probs=146.2

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcE
Q 028792            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG   83 (203)
Q Consensus         4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   83 (203)
                      +..+.++|+++|.+|+|||||+++|.+..+...+.++.+..+. ..+..++..+.+.+||+||++++...+..++.++|+
T Consensus        19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   97 (194)
T 3reg_A           19 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDV   97 (194)
T ss_dssp             --CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred             ccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcE
Confidence            3457799999999999999999999998887777777766555 456678888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCC--cccCHHHHHHHHHHcCCC-EEEEecCCCCCHH
Q 028792           84 IIVVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTAN--KVVSYETAKAFADEIGIP-FMETSAKSATNVE  159 (203)
Q Consensus        84 ~i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~iiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~  159 (203)
                      +++|||+++++++..+ ..|+..+.... .+.|+++|+||+|+.+.  ..+..+++.+++..+++. ++++||++|.|++
T Consensus        98 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  176 (194)
T 3reg_A           98 VLLCFAVNNRTSFDNISTKWEPEIKHYI-DTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLN  176 (194)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHC-TTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHH
Confidence            9999999999999997 56888777654 36899999999999753  567788999999999988 9999999999999


Q ss_pred             HHHHHHHHHHHHHh
Q 028792          160 QAFMAMAASIKNRM  173 (203)
Q Consensus       160 ~~~~~l~~~~~~~~  173 (203)
                      ++|++|.+.+.++.
T Consensus       177 ~l~~~l~~~i~~~~  190 (194)
T 3reg_A          177 EVFEKSVDCIFSNK  190 (194)
T ss_dssp             HHHHHHHHHHHCSC
T ss_pred             HHHHHHHHHHHhcC
Confidence            99999999887543

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=100.00  E-value=1e-32  Score=200.40  Aligned_cols=165  Identities=35%  Similarity=0.624  Sum_probs=146.2

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeE-----------------------------
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKT-----------------------------   56 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------   56 (203)
                      ++.++|+|+|++|+|||||+++|++..+...+.++.+.++....+..++..                             
T Consensus         5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (208)
T 3clv_A            5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN   84 (208)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence            467999999999999999999999998888888888878877777776655                             


Q ss_pred             --------EEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 028792           57 --------IKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN  128 (203)
Q Consensus        57 --------~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~  128 (203)
                              ..+.+||+||+..+...+..++..+|++++|+|++++.++..+..|+..+.....  .|+++|+||+| ...
T Consensus        85 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--~piilv~NK~D-~~~  161 (208)
T 3clv_A           85 NYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN--YIIILVANKID-KNK  161 (208)
T ss_dssp             CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--CEEEEEEECTT-CC-
T ss_pred             cccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC--CcEEEEEECCC-ccc
Confidence                    8899999999999999999999999999999999999999999999988876653  89999999999 555


Q ss_pred             cccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 028792          129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRM  173 (203)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~  173 (203)
                      .....+++.+++...+++++++||++|.|++++|.+|.+.+.++.
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~  206 (208)
T 3clv_A          162 FQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKNI  206 (208)
T ss_dssp             CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence            677888999999999999999999999999999999999887654

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=100.00  E-value=9e-33  Score=198.26  Aligned_cols=164  Identities=21%  Similarity=0.351  Sum_probs=141.9

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcE
Q 028792            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG   83 (203)
Q Consensus         4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   83 (203)
                      .....+||+|+|++|||||||+++|+++.+...+.++..  .....+.+++..+.+.+||++|++++.     ++..+|+
T Consensus        16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~--~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~   88 (184)
T 3ihw_A           16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG--RFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDA   88 (184)
T ss_dssp             CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE--EEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSE
T ss_pred             CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc--eEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCE
Confidence            456789999999999999999999999888877766632  334777888988999999999987765     7788999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCC--CCcccCHHHHHHHHHHcC-CCEEEEecCCCCCHH
Q 028792           84 IIVVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLT--ANKVVSYETAKAFADEIG-IPFMETSAKSATNVE  159 (203)
Q Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~--~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~  159 (203)
                      +++|||+++++++..+..|+..+..... .+.|+++|+||+|+.  ..+.+..+++.+++..++ ++++++||++|.|++
T Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~  168 (184)
T 3ihw_A           89 VVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVE  168 (184)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCHH
Confidence            9999999999999999999999877653 468999999999994  456788889999999997 899999999999999


Q ss_pred             HHHHHHHHHHHHHhc
Q 028792          160 QAFMAMAASIKNRMA  174 (203)
Q Consensus       160 ~~~~~l~~~~~~~~~  174 (203)
                      ++|.+|.+.+.+.+.
T Consensus       169 ~lf~~l~~~i~~~~~  183 (184)
T 3ihw_A          169 RVFQDVAQKVVALRK  183 (184)
T ss_dssp             HHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999999887654

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=100.00  E-value=7.2e-33  Score=195.05  Aligned_cols=163  Identities=30%  Similarity=0.433  Sum_probs=123.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEE
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVV   87 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (203)
                      .+||+++|++|+|||||+++|.+...... .++.+.++ ...+..++..+.+.+||+||+.++...+..++..+|++++|
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   79 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVEDGPE-AEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV   79 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCccccCC-CCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence            58999999999999999999997665433 23333333 45667888889999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHH
Q 028792           88 YDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMA  166 (203)
Q Consensus        88 ~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  166 (203)
                      ||+++++++..+..|+..+.... ..+.|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|.+|.
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  159 (166)
T 3q72_A           80 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV  159 (166)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Confidence            99999999999999988887653 35789999999999988888889999999999999999999999999999999999


Q ss_pred             HHHHHH
Q 028792          167 ASIKNR  172 (203)
Q Consensus       167 ~~~~~~  172 (203)
                      +.+.++
T Consensus       160 ~~~~~~  165 (166)
T 3q72_A          160 RQIRLR  165 (166)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            988765

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.8e-33  Score=204.51  Aligned_cols=169  Identities=27%  Similarity=0.441  Sum_probs=143.6

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEE
Q 028792            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI   84 (203)
Q Consensus         5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (203)
                      ....++|+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..++..+|++
T Consensus        21 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   99 (201)
T 3oes_A           21 LVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGY   99 (201)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEE
T ss_pred             CCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEE
Confidence            34679999999999999999999999988887777776655 55566667778999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHH
Q 028792           85 IVVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFM  163 (203)
Q Consensus        85 i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  163 (203)
                      ++|||+++++++..+..|+..+..... .+.|+++|+||+|+.....+..++...++...+++++++||++|.|++++|.
T Consensus       100 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~  179 (201)
T 3oes_A          100 VLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFT  179 (201)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHH
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHH
Confidence            999999999999999999988866533 4689999999999988788888999999999999999999999999999999


Q ss_pred             HHHHHHHHHhc
Q 028792          164 AMAASIKNRMA  174 (203)
Q Consensus       164 ~l~~~~~~~~~  174 (203)
                      +|.+.+.+...
T Consensus       180 ~l~~~i~~~~~  190 (201)
T 3oes_A          180 KVIQEIARVEN  190 (201)
T ss_dssp             HHHHHHHHC--
T ss_pred             HHHHHHHhhhh
Confidence            99999876543

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=100.00  E-value=2.9e-33  Score=201.28  Aligned_cols=164  Identities=26%  Similarity=0.427  Sum_probs=140.5

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEE
Q 028792            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI   84 (203)
Q Consensus         5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (203)
                      ..+.++|+++|.+|+|||||+++|.++.+...+.++.+..+ ...+..++..+.+.+||+||++.+... ..++..+|++
T Consensus        18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~   95 (187)
T 3c5c_A           18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAF   95 (187)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEE
T ss_pred             CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEE
Confidence            45679999999999999999999999888877777777555 345667888899999999999888774 5688999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhcC---CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEec-CCCCCHHH
Q 028792           85 IVVYDVTDQESFNNVKQWLNEIDRYAS---ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSA-KSATNVEQ  160 (203)
Q Consensus        85 i~v~d~~~~~s~~~~~~~~~~l~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa-~~~~gi~~  160 (203)
                      ++|||+++++++..+..|+..+.....   .+.|+++|+||+|+...+.+..+++.+++..++++++++|| ++|.|+++
T Consensus        96 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~  175 (187)
T 3c5c_A           96 LVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQH  175 (187)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHHH
Confidence            999999999999999999998876532   47899999999999777778889999999999999999999 89999999


Q ss_pred             HHHHHHHHHH
Q 028792          161 AFMAMAASIK  170 (203)
Q Consensus       161 ~~~~l~~~~~  170 (203)
                      +|.+|.+.+.
T Consensus       176 lf~~l~~~i~  185 (187)
T 3c5c_A          176 VFHEAVREAR  185 (187)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999998875

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=100.00  E-value=3.1e-33  Score=205.21  Aligned_cols=170  Identities=26%  Similarity=0.529  Sum_probs=144.2

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcE
Q 028792            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG   83 (203)
Q Consensus         4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   83 (203)
                      +....++|+|+|.+|||||||+++|.++.+...+.++.+..+ ...+..++..+.+.+||++|++++...+..++..+|+
T Consensus        23 ~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~  101 (214)
T 3q3j_B           23 PVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA  101 (214)
T ss_dssp             ----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred             CccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeE
Confidence            345679999999999999999999999988888888877665 3556677778999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHH-HHHHHHHHHhhcCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHcCC-CEEE
Q 028792           84 IIVVYDVTDQESFNN-VKQWLNEIDRYASENVNKLLVGNKCDLTAN------------KVVSYETAKAFADEIGI-PFME  149 (203)
Q Consensus        84 ~i~v~d~~~~~s~~~-~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~  149 (203)
                      +|+|||+++++++.. +..|+..+..... +.|+++|+||+|+.+.            +.+..++..+++..+++ ++++
T Consensus       102 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e  180 (214)
T 3q3j_B          102 VLLCFDISRPETVDSALKKWRTEILDYCP-STRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLE  180 (214)
T ss_dssp             EEEEEETTCTHHHHHHHTHHHHHHHHHCT-TSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEE
Confidence            999999999999998 6889998877753 7899999999999753            56888999999999999 9999


Q ss_pred             EecCCCCC-HHHHHHHHHHHHHHHhcc
Q 028792          150 TSAKSATN-VEQAFMAMAASIKNRMAS  175 (203)
Q Consensus       150 ~Sa~~~~g-i~~~~~~l~~~~~~~~~~  175 (203)
                      +||++|.| ++++|.+|.+.+.+....
T Consensus       181 ~SA~~g~g~v~~lf~~l~~~~~~~~~~  207 (214)
T 3q3j_B          181 GSAFTSEKSIHSIFRTASMLCLNKPSP  207 (214)
T ss_dssp             CCTTTCHHHHHHHHHHHHHHHHC----
T ss_pred             eccCCCcccHHHHHHHHHHHHhccCcC
Confidence            99999998 999999999998865543

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=100.00  E-value=9.5e-33  Score=197.83  Aligned_cols=169  Identities=37%  Similarity=0.614  Sum_probs=147.4

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEE
Q 028792            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI   84 (203)
Q Consensus         5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (203)
                      ....++|+|+|++|+|||||+++|.+..+...+.++....+ ...+..++..+.+.+||+||+.++...+..++..+|++
T Consensus        15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   93 (187)
T 2a9k_A           15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF   93 (187)
T ss_dssp             --CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEE
Confidence            45679999999999999999999998888777666665444 34556788888999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHH
Q 028792           85 IVVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFM  163 (203)
Q Consensus        85 i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  163 (203)
                      ++|||+++++++..+..|+..+..... .+.|+++|+||+|+.+.+.+..+++.+++..++++++++||+++.|++++|.
T Consensus        94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  173 (187)
T 2a9k_A           94 LCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFF  173 (187)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHH
Confidence            999999999999999999888876654 4789999999999987667788889999999999999999999999999999


Q ss_pred             HHHHHHHHHhc
Q 028792          164 AMAASIKNRMA  174 (203)
Q Consensus       164 ~l~~~~~~~~~  174 (203)
                      +|.+.+.+++.
T Consensus       174 ~l~~~i~~~~~  184 (187)
T 2a9k_A          174 DLMREIRARKM  184 (187)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHhhc
Confidence            99999887654

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=100.00  E-value=9e-33  Score=194.52  Aligned_cols=164  Identities=38%  Similarity=0.643  Sum_probs=141.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEE
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV   86 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (203)
                      ..++|+++|++|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+.+||+||+.++...+..++..+|++++
T Consensus         3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (168)
T 1u8z_A            3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   81 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence            468999999999999999999998887777666665444 3455678888899999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHH
Q 028792           87 VYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAM  165 (203)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  165 (203)
                      |+|+++++++..+..|+..+..... .+.|+++|+||+|+.+.+.+..+++.+++...+++++++||++|.|++++|.+|
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  161 (168)
T 1u8z_A           82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDL  161 (168)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHH
Confidence            9999999999999999988876654 479999999999998766788888999999999999999999999999999999


Q ss_pred             HHHHHH
Q 028792          166 AASIKN  171 (203)
Q Consensus       166 ~~~~~~  171 (203)
                      .+.+.+
T Consensus       162 ~~~i~~  167 (168)
T 1u8z_A          162 MREIRA  167 (168)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            998753

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=100.00  E-value=5.9e-33  Score=195.50  Aligned_cols=163  Identities=36%  Similarity=0.634  Sum_probs=142.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEE
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV   86 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (203)
                      +.++|+++|++|+|||||+++|.++.+...+.++.+..+. ..+..++..+.+.+||+||+.++...+..++..+|++++
T Consensus         2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   80 (167)
T 1c1y_A            2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL   80 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEE-EEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence            4689999999999999999999998887777777765443 556677778899999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHc-CCCEEEEecCCCCCHHHHHHH
Q 028792           87 VYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSYETAKAFADEI-GIPFMETSAKSATNVEQAFMA  164 (203)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~~~~~  164 (203)
                      |+|+++++++..+..|+..+.... ..+.|+++|+||+|+.+.+.+..++..+++..+ +++++++||++|.|++++|.+
T Consensus        81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  160 (167)
T 1c1y_A           81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYD  160 (167)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHH
Confidence            999999999999999988876653 357999999999999877777888889998887 789999999999999999999


Q ss_pred             HHHHHH
Q 028792          165 MAASIK  170 (203)
Q Consensus       165 l~~~~~  170 (203)
                      |.+.+.
T Consensus       161 l~~~i~  166 (167)
T 1c1y_A          161 LVRQIN  166 (167)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            998763

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=100.00  E-value=8.6e-33  Score=194.44  Aligned_cols=164  Identities=37%  Similarity=0.607  Sum_probs=144.0

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEE
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV   86 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (203)
                      +.++|+++|++|+|||||+++|.++.+...+.++.+.. ....+..++....+.+||+||+.++...+..++..+|++++
T Consensus         2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~   80 (167)
T 1kao_A            2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDF-YRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL   80 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCccee-EEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence            35899999999999999999999888877766666533 35667788888899999999999999889999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHH
Q 028792           87 VYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAM  165 (203)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  165 (203)
                      |+|++++.++..+..|+..+..... .+.|+++|+||+|+.+.+.+..++..+++...+++++++||++|.|++++|++|
T Consensus        81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  160 (167)
T 1kao_A           81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEI  160 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHH
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHH
Confidence            9999999999999998888766543 579999999999997767778888899999999999999999999999999999


Q ss_pred             HHHHHH
Q 028792          166 AASIKN  171 (203)
Q Consensus       166 ~~~~~~  171 (203)
                      .+.+.+
T Consensus       161 ~~~~~~  166 (167)
T 1kao_A          161 VRQMNY  166 (167)
T ss_dssp             HHHHHH
T ss_pred             HHHHhh
Confidence            988754

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=3.3e-32  Score=196.57  Aligned_cols=165  Identities=32%  Similarity=0.584  Sum_probs=143.9

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcE
Q 028792            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG   83 (203)
Q Consensus         4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   83 (203)
                      +..+.++|+++|++|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+.+||+||++++...+..++..+|+
T Consensus        14 ~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   92 (194)
T 2atx_A           14 PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDV   92 (194)
T ss_dssp             CEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSE
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCE
Confidence            345789999999999999999999999888777777776544 4456677778899999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHcCC-CEEE
Q 028792           84 IIVVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTAN------------KVVSYETAKAFADEIGI-PFME  149 (203)
Q Consensus        84 ~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~  149 (203)
                      +++|||+++++++..+. .|+..+..... +.|+++|+||+|+.+.            +.+..++..+++..+++ ++++
T Consensus        93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  171 (194)
T 2atx_A           93 FLICFSVVNPASFQNVKEEWVPELKEYAP-NVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVE  171 (194)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEE
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEE
Confidence            99999999999999987 68888877644 6899999999999764            35677888999999997 9999


Q ss_pred             EecCCCCCHHHHHHHHHHHHH
Q 028792          150 TSAKSATNVEQAFMAMAASIK  170 (203)
Q Consensus       150 ~Sa~~~~gi~~~~~~l~~~~~  170 (203)
                      +||++|+|++++|.+|.+.+.
T Consensus       172 ~Sa~~g~gi~~l~~~l~~~i~  192 (194)
T 2atx_A          172 CSALTQKGLKTVFDEAIIAIL  192 (194)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHH
T ss_pred             eeCCCCCCHHHHHHHHHHHHh
Confidence            999999999999999998875

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=100.00  E-value=2e-32  Score=198.74  Aligned_cols=170  Identities=31%  Similarity=0.497  Sum_probs=138.2

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcE
Q 028792            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG   83 (203)
Q Consensus         4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   83 (203)
                      .....++|+++|.+|+|||||+++|.+..+...+.++....+ ...+..++..+.+.+||+||++++...+..++.++|+
T Consensus        16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   94 (201)
T 2q3h_A           16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDI   94 (201)
T ss_dssp             ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSE
T ss_pred             CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcE
Confidence            456789999999999999999999998887777767765444 4556678888899999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHcCC-CEEE
Q 028792           84 IIVVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTAN------------KVVSYETAKAFADEIGI-PFME  149 (203)
Q Consensus        84 ~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~  149 (203)
                      +++|||+++++++..+. .|+..+..... +.|+++|+||+|+...            ..+..++...++..++. ++++
T Consensus        95 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  173 (201)
T 2q3h_A           95 FLLCFSVVSPSSFQNVSEKWVPEIRCHCP-KAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIE  173 (201)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHCS-SSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEE
Confidence            99999999999999987 68888877654 7899999999998753            45677888899988887 8999


Q ss_pred             EecCCCCCHHHHHHHHHHHHHHHhcc
Q 028792          150 TSAKSATNVEQAFMAMAASIKNRMAS  175 (203)
Q Consensus       150 ~Sa~~~~gi~~~~~~l~~~~~~~~~~  175 (203)
                      +||++|.|++++|.+|.+.+.+.+.+
T Consensus       174 ~Sa~~g~gi~~l~~~l~~~~~~~~~~  199 (201)
T 2q3h_A          174 CSALTQKNLKEVFDAAIVAGIQYSDT  199 (201)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHHHHC-
T ss_pred             EecCCCCCHHHHHHHHHHHHhccccc
Confidence            99999999999999999999877653

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=100.00  E-value=7.5e-33  Score=201.94  Aligned_cols=169  Identities=31%  Similarity=0.599  Sum_probs=142.2

Q ss_pred             CCCCCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccC
Q 028792            1 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRG   80 (203)
Q Consensus         1 ~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~   80 (203)
                      |+...++.++|+++|++|+|||||+++|.+..+...+.++....+ ...+..++..+.+.+||+||++.+...+..++..
T Consensus        21 m~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~   99 (205)
T 1gwn_A           21 MDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPD   99 (205)
T ss_dssp             ------CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTT
T ss_pred             CCcccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccC
Confidence            555667889999999999999999999999888877777776555 3456677778999999999999999999999999


Q ss_pred             CcEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHcC-CC
Q 028792           81 AHGIIVVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTAN------------KVVSYETAKAFADEIG-IP  146 (203)
Q Consensus        81 ~d~~i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~  146 (203)
                      +|++++|||+++++++..+ ..|+..+..... +.|+++|+||+|+.+.            +.+..+++.++++.++ ++
T Consensus       100 ~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  178 (205)
T 1gwn_A          100 SDAVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAAT  178 (205)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-TCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSE
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCE
Confidence            9999999999999999998 678888876643 6899999999999642            4567788889998887 69


Q ss_pred             EEEEecC-CCCCHHHHHHHHHHHHHH
Q 028792          147 FMETSAK-SATNVEQAFMAMAASIKN  171 (203)
Q Consensus       147 ~~~~Sa~-~~~gi~~~~~~l~~~~~~  171 (203)
                      ++++||+ ++.|++++|.+|.+.+.+
T Consensus       179 ~~e~SAk~~~~gv~~lf~~l~~~~l~  204 (205)
T 1gwn_A          179 YIECSALQSENSVRDIFHVATLACVN  204 (205)
T ss_dssp             EEECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred             EEEeeeccCCcCHHHHHHHHHHHHhh
Confidence            9999999 689999999999998764

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2.4e-32  Score=199.84  Aligned_cols=169  Identities=27%  Similarity=0.385  Sum_probs=138.4

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhcCCC--CCCCccccceeeEEEEEEECCeEEEEEEEeCCChhh-hchhhhccccC
Q 028792            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSY--LESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER-FRTITSSYYRG   80 (203)
Q Consensus         4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~   80 (203)
                      ..+..+||+++|.+|||||||+++|.+...  ...+ ++++.++....+.+++..+.+.+||++|... +..+...++..
T Consensus        33 ~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~-~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~  111 (211)
T 2g3y_A           33 SGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDC-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQV  111 (211)
T ss_dssp             --CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCC
T ss_pred             cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcC-CccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhh
Confidence            445679999999999999999999996433  3332 3455566667778889889999999999776 44556677889


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHH
Q 028792           81 AHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVE  159 (203)
Q Consensus        81 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  159 (203)
                      +|++|+|||++++++|..+..|+..+.... ..+.|+++|+||+|+.+.+.+..++...++..++++++++||++|.|++
T Consensus       112 a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~  191 (211)
T 2g3y_A          112 GDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVK  191 (211)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHH
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence            999999999999999999999988776542 2478999999999997766777888888888899999999999999999


Q ss_pred             HHHHHHHHHHHHHh
Q 028792          160 QAFMAMAASIKNRM  173 (203)
Q Consensus       160 ~~~~~l~~~~~~~~  173 (203)
                      ++|.+|.+.+..++
T Consensus       192 elf~~l~~~i~~~~  205 (211)
T 2g3y_A          192 ELFEGIVRQVRLRR  205 (211)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999886544

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=100.00  E-value=2.1e-35  Score=214.35  Aligned_cols=170  Identities=89%  Similarity=1.329  Sum_probs=143.5

Q ss_pred             CCCCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCC
Q 028792            2 NNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGA   81 (203)
Q Consensus         2 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~   81 (203)
                      +...++.++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..++..+
T Consensus        27 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~  106 (199)
T 3l0i_B           27 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGA  106 (199)
T ss_dssp             -CCCSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCC
T ss_pred             CcccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcC
Confidence            44567889999999999999999999999888888778888888888888999889999999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHH
Q 028792           82 HGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQA  161 (203)
Q Consensus        82 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~  161 (203)
                      |++++|||+++++++..+..|+..+......+.|+++|+||+|+.+.+.+..++...++..++++++++||++|.|++++
T Consensus       107 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l  186 (199)
T 3l0i_B          107 HGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQS  186 (199)
T ss_dssp             SEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHH
Confidence            99999999999999999999999997776668999999999999877777767788889999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 028792          162 FMAMAASIKN  171 (203)
Q Consensus       162 ~~~l~~~~~~  171 (203)
                      |.+|.+.+.+
T Consensus       187 ~~~l~~~l~~  196 (199)
T 3l0i_B          187 FMTMAAEIKK  196 (199)
T ss_dssp             HHHHTTTTTT
T ss_pred             HHHHHHHHHH
Confidence            9999876643

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=100.00  E-value=2.6e-33  Score=204.15  Aligned_cols=168  Identities=27%  Similarity=0.507  Sum_probs=112.7

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcC--CCCCCCccccceeeEEEEEEECCe--EEEEEEEeCCChhhhchhhhccccCC
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADD--SYLESYISTIGVDFKIRTVEQDGK--TIKLQIWDTAGQERFRTITSSYYRGA   81 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~   81 (203)
                      .+.++|+|+|++|+|||||+++|.+.  .+...+.++.+.++....+.+++.  .+.+.+||+||+..+...+..++..+
T Consensus        18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   97 (208)
T 2yc2_C           18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV   97 (208)
T ss_dssp             EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence            46789999999999999999999988  777677777777777788888876  78999999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHhhcC---CCCcEEEEEeCCCCCC-CcccCHHHHHHHHHHcCCCEEEEecCC-CC
Q 028792           82 HGIIVVYDVTDQESFNNVKQWLNEIDRYAS---ENVNKLLVGNKCDLTA-NKVVSYETAKAFADEIGIPFMETSAKS-AT  156 (203)
Q Consensus        82 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~---~~~p~iiv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~-~~  156 (203)
                      |++++|||++++.++..+..|+..+.....   .+.|+++|+||+|+.+ .+.+..+++.+++..++++++++||++ |.
T Consensus        98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~  177 (208)
T 2yc2_C           98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGK  177 (208)
T ss_dssp             CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-----
T ss_pred             cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCc
Confidence            999999999999999999999999887765   5799999999999987 677888899999999999999999999 99


Q ss_pred             CHHHHHHHHHHHHHHHh
Q 028792          157 NVEQAFMAMAASIKNRM  173 (203)
Q Consensus       157 gi~~~~~~l~~~~~~~~  173 (203)
                      |++++|.+|.+.+.+..
T Consensus       178 gi~~l~~~i~~~~~~~~  194 (208)
T 2yc2_C          178 DADAPFLSIATTFYRNY  194 (208)
T ss_dssp             --CHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHH
Confidence            99999999999887654

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=100.00  E-value=3.1e-32  Score=194.07  Aligned_cols=163  Identities=24%  Similarity=0.348  Sum_probs=136.8

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      ...+||+++|++|+|||||+++|.++.+.. +.++.+.. ....+..++..+.+.+||+||+++     ..++.++|+++
T Consensus         5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i   77 (178)
T 2iwr_A            5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQ-YKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVI   77 (178)
T ss_dssp             CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSE-EEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCccee-EEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEE
Confidence            467999999999999999999999988776 55666533 356677888889999999999875     35678899999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcC---CCCcEEEEEeCCCCC--CCcccCHHHHHHHHHHc-CCCEEEEecCCCCCHH
Q 028792           86 VVYDVTDQESFNNVKQWLNEIDRYAS---ENVNKLLVGNKCDLT--ANKVVSYETAKAFADEI-GIPFMETSAKSATNVE  159 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~l~~~~~---~~~p~iiv~nK~D~~--~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~  159 (203)
                      +|||+++++++..+..|+..+.....   .+.|+++|+||+|+.  ..+.+..+++.+++... +++++++||++|.|++
T Consensus        78 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  157 (178)
T 2iwr_A           78 FVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVD  157 (178)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHH
Confidence            99999999999999998766655433   478999999999994  45567788888888876 6899999999999999


Q ss_pred             HHHHHHHHHHHHHhcc
Q 028792          160 QAFMAMAASIKNRMAS  175 (203)
Q Consensus       160 ~~~~~l~~~~~~~~~~  175 (203)
                      ++|.+|.+.+.+.+..
T Consensus       158 ~lf~~l~~~~~~~~~~  173 (178)
T 2iwr_A          158 RVFQEVAQKVVTLRKQ  173 (178)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            9999999998876543

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2.5e-32  Score=197.64  Aligned_cols=166  Identities=33%  Similarity=0.523  Sum_probs=145.1

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      ...++|+++|.+|+|||||+++|.++.+...+.++.+..+ ...+..++..+.+.+||+||... ...+..++..+|+++
T Consensus        26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ii  103 (196)
T 2atv_A           26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFV  103 (196)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEE
Confidence            4679999999999999999999999888777777776544 45566788889999999999887 677888899999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCC-CHHHHHH
Q 028792           86 VVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSAT-NVEQAFM  163 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-gi~~~~~  163 (203)
                      +|||+++++++..+..|+..+..... .+.|+++|+||+|+.+.+.+..++..+++...+++++++||++|. |++++|.
T Consensus       104 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~~  183 (196)
T 2atv_A          104 LVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFY  183 (196)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHH
Confidence            99999999999999999888876543 578999999999998767788888999999999999999999999 9999999


Q ss_pred             HHHHHHHHHh
Q 028792          164 AMAASIKNRM  173 (203)
Q Consensus       164 ~l~~~~~~~~  173 (203)
                      +|.+.+.+++
T Consensus       184 ~l~~~i~~~~  193 (196)
T 2atv_A          184 ELCREVRRRR  193 (196)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHhhc
Confidence            9999987654

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=100.00  E-value=1.4e-31  Score=192.55  Aligned_cols=169  Identities=34%  Similarity=0.625  Sum_probs=134.8

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcE
Q 028792            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG   83 (203)
Q Consensus         4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   83 (203)
                      +....++|+++|.+|+|||||+++|.++.+...+.++.+..+ ...+..++..+.+.+||+||..++...+..++..+|+
T Consensus        17 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   95 (190)
T 3con_A           17 QGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG   95 (190)
T ss_dssp             --CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-----------CTTCSE
T ss_pred             cccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCE
Confidence            345679999999999999999999998887766666654333 4566678888899999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHH
Q 028792           84 IIVVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAF  162 (203)
Q Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~  162 (203)
                      +++|+|++++.++..+..|+..+..... .+.|+++|+||+|+.. .....+++.+++...+++++++||++|.|++++|
T Consensus        96 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  174 (190)
T 3con_A           96 FLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAF  174 (190)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc-ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence            9999999999999999999888876654 4689999999999876 5567788899999999999999999999999999


Q ss_pred             HHHHHHHHHHhc
Q 028792          163 MAMAASIKNRMA  174 (203)
Q Consensus       163 ~~l~~~~~~~~~  174 (203)
                      .+|.+.+.+.+.
T Consensus       175 ~~l~~~~~~~~~  186 (190)
T 3con_A          175 YTLVREIRQYRM  186 (190)
T ss_dssp             HHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHH
Confidence            999999887654

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=100.00  E-value=2.1e-32  Score=196.17  Aligned_cols=166  Identities=31%  Similarity=0.598  Sum_probs=141.7

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcE
Q 028792            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG   83 (203)
Q Consensus         4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   83 (203)
                      ..++.++|+++|++|+|||||+++|.+..+...+.++....+ ...+..++..+.+.+||+||++.+...+..++..+|+
T Consensus         3 ~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   81 (184)
T 1m7b_A            3 NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDA   81 (184)
T ss_dssp             ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred             CCceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcE
Confidence            346789999999999999999999999888777777776555 3456677778999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHcC-CCEEE
Q 028792           84 IIVVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTAN------------KVVSYETAKAFADEIG-IPFME  149 (203)
Q Consensus        84 ~i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~  149 (203)
                      +++|||+++++++..+ ..|+..+..... +.|+++|+||+|+.+.            +.+..+++.+++..++ +++++
T Consensus        82 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e  160 (184)
T 1m7b_A           82 VLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIE  160 (184)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHCT-TCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEE
Confidence            9999999999999998 678888876643 6899999999999742            4577888899998888 68999


Q ss_pred             EecC-CCCCHHHHHHHHHHHHHH
Q 028792          150 TSAK-SATNVEQAFMAMAASIKN  171 (203)
Q Consensus       150 ~Sa~-~~~gi~~~~~~l~~~~~~  171 (203)
                      +||+ ++.|++++|.+|.+.+.+
T Consensus       161 ~Sa~~~~~gi~~l~~~i~~~~l~  183 (184)
T 1m7b_A          161 CSALQSENSVRDIFHVATLACVN  183 (184)
T ss_dssp             CBTTTBHHHHHHHHHHHHHHHHT
T ss_pred             eeecCCCcCHHHHHHHHHHHHhc
Confidence            9999 689999999999998763

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=100.00  E-value=6.5e-32  Score=193.41  Aligned_cols=163  Identities=29%  Similarity=0.577  Sum_probs=141.6

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      ...++|+++|++|+|||||+++|.++.+...+.++....+ ...+..++..+.+.+||+||++++...+..++..+|+++
T Consensus         3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   81 (186)
T 1mh1_A            3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL   81 (186)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence            4679999999999999999999998888777766665444 455667888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHcCC-CEEEEe
Q 028792           86 VVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTAN------------KVVSYETAKAFADEIGI-PFMETS  151 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~S  151 (203)
                      +|||++++.++..+. .|+..+..... +.|+++|+||+|+.+.            +.+..++...++...+. +++++|
T Consensus        82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  160 (186)
T 1mh1_A           82 ICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS  160 (186)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHST-TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEECCChhhHHHHHHHHHHHHHHhCC-CCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEec
Confidence            999999999999987 68888877654 7899999999998654            35677788889988887 999999


Q ss_pred             cCCCCCHHHHHHHHHHHHH
Q 028792          152 AKSATNVEQAFMAMAASIK  170 (203)
Q Consensus       152 a~~~~gi~~~~~~l~~~~~  170 (203)
                      |++|.|++++|.+|.+.+.
T Consensus       161 a~~g~gi~~l~~~l~~~~~  179 (186)
T 1mh1_A          161 ALTQRGLKTVFDEAIRAVL  179 (186)
T ss_dssp             TTTCTTHHHHHHHHHHHHS
T ss_pred             CCCccCHHHHHHHHHHHHh
Confidence            9999999999999999875

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=100.00  E-value=6.8e-32  Score=198.05  Aligned_cols=167  Identities=32%  Similarity=0.623  Sum_probs=123.7

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      .+.++|+++|.+|+|||||+++|.++.+...+.++....+ ...+..++..+.+.+||+||++++...+..++..+|+++
T Consensus        32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i  110 (214)
T 2j1l_A           32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL  110 (214)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence            4579999999999999999999999888777666665433 455677888889999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCc------------ccCHHHHHHHHHHcCC-CEEEEe
Q 028792           86 VVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTANK------------VVSYETAKAFADEIGI-PFMETS  151 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~S  151 (203)
                      +|||+++++++..+. .|+..+.... .+.|+++|+||+|+....            .+..++..+++...++ +++++|
T Consensus       111 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  189 (214)
T 2j1l_A          111 LCFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECS  189 (214)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECB
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEec
Confidence            999999999999987 6888887654 368999999999997653            5667788899999997 899999


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHhc
Q 028792          152 AKSATNVEQAFMAMAASIKNRMA  174 (203)
Q Consensus       152 a~~~~gi~~~~~~l~~~~~~~~~  174 (203)
                      |++|.|++++|.+|.+.+.+.+.
T Consensus       190 A~~g~gi~el~~~l~~~~~~~~~  212 (214)
T 2j1l_A          190 ARLHDNVHAVFQEAAEVALSSRG  212 (214)
T ss_dssp             TTTTBSHHHHHHHHHHHHHHC--
T ss_pred             CCCCCCHHHHHHHHHHHHHHhhc
Confidence            99999999999999999886543

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=100.00  E-value=2.1e-31  Score=193.64  Aligned_cols=163  Identities=31%  Similarity=0.607  Sum_probs=142.2

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      +..++|+++|.+|+|||||+++|.++.+...+.++.+..+. ..+..++..+.+.+||+||++++...+..++..+|+++
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i  101 (201)
T 2gco_A           23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL  101 (201)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEE
Confidence            56799999999999999999999998888777777766654 34667888889999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHcCC-CEEEEe
Q 028792           86 VVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTAN------------KVVSYETAKAFADEIGI-PFMETS  151 (203)
Q Consensus        86 ~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~S  151 (203)
                      +|||+++++++..+ ..|+..+..... +.|+++|+||+|+.+.            +.+..++..+++...+. +++++|
T Consensus       102 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  180 (201)
T 2gco_A          102 MCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECS  180 (201)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEee
Confidence            99999999999998 568877766543 6899999999999765            34677788889999887 899999


Q ss_pred             cCCCCCHHHHHHHHHHHHH
Q 028792          152 AKSATNVEQAFMAMAASIK  170 (203)
Q Consensus       152 a~~~~gi~~~~~~l~~~~~  170 (203)
                      |++|.|++++|.+|.+.+.
T Consensus       181 A~~g~gi~~l~~~i~~~~l  199 (201)
T 2gco_A          181 AKTKEGVREVFEMATRAGL  199 (201)
T ss_dssp             TTTCTTHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHh
Confidence            9999999999999998775

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=100.00  E-value=3.6e-31  Score=185.82  Aligned_cols=162  Identities=35%  Similarity=0.628  Sum_probs=140.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEE
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVV   87 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (203)
                      .++|+++|++|+|||||+++|.+..+...+.++.... ....+..++..+.+.+||+||..++...+..++..+|++++|
T Consensus         3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T 2ce2_X            3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDS-YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceE-EEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence            5899999999999999999999888777666665533 345566788888999999999999888899999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHH
Q 028792           88 YDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMA  166 (203)
Q Consensus        88 ~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  166 (203)
                      +|++++.++..+..|+..+..... .+.|+++|+||+|+.+ .....++..+++..++++++++||++|.|++++|.+|.
T Consensus        82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  160 (166)
T 2ce2_X           82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV  160 (166)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh-cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence            999999999999999988876654 4789999999999876 45667888899999999999999999999999999999


Q ss_pred             HHHHH
Q 028792          167 ASIKN  171 (203)
Q Consensus       167 ~~~~~  171 (203)
                      +.+.+
T Consensus       161 ~~~~~  165 (166)
T 2ce2_X          161 REIRQ  165 (166)
T ss_dssp             HHHHT
T ss_pred             HHHHh
Confidence            88753

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=3.1e-32  Score=192.57  Aligned_cols=163  Identities=33%  Similarity=0.527  Sum_probs=140.4

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEE
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV   86 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (203)
                      ..++|+++|++|+|||||+++|.++.+...+.++.+..+. ..+..++..+.+.+||+||+.++...+..++..+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~   80 (172)
T 2erx_A            2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL   80 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE-EEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE-EEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence            4589999999999999999999998877776676654443 445567777899999999999988888899999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHH
Q 028792           87 VYDVTDQESFNNVKQWLNEIDRYAS--ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMA  164 (203)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~l~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  164 (203)
                      |+|+++++++..+..|+..+.....  .+.|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|++
T Consensus        81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  160 (172)
T 2erx_A           81 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE  160 (172)
T ss_dssp             EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHH
Confidence            9999999999988888887766542  46899999999999876777788888888889999999999999999999999


Q ss_pred             HHHHHH
Q 028792          165 MAASIK  170 (203)
Q Consensus       165 l~~~~~  170 (203)
                      |.+.+.
T Consensus       161 l~~~~~  166 (172)
T 2erx_A          161 LLNLEK  166 (172)
T ss_dssp             HHHTCC
T ss_pred             HHHHHh
Confidence            988653

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2.6e-31  Score=193.95  Aligned_cols=165  Identities=31%  Similarity=0.598  Sum_probs=136.9

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      ...++|+++|.+|+|||||+++|.+..+...+.++.+..+.. .+..++..+.+.+||+||++++...+..++..+|+++
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  101 (207)
T 2fv8_A           23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL  101 (207)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEE-EEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred             ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEE-EEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence            457899999999999999999999988877776776655543 3667888889999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHcCC-CEEEEe
Q 028792           86 VVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTAN------------KVVSYETAKAFADEIGI-PFMETS  151 (203)
Q Consensus        86 ~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~S  151 (203)
                      +|||+++++++..+ ..|+..+.... .+.|+++|+||+|+.+.            +.+..++...++...++ +++++|
T Consensus       102 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  180 (207)
T 2fv8_A          102 MCFSVDSPDSLENIPEKWVPEVKHFC-PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECS  180 (207)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEee
Confidence            99999999999998 56888777654 36899999999999754            34667788888888887 899999


Q ss_pred             cCCCCCHHHHHHHHHHHHHHH
Q 028792          152 AKSATNVEQAFMAMAASIKNR  172 (203)
Q Consensus       152 a~~~~gi~~~~~~l~~~~~~~  172 (203)
                      |++|.|++++|++|.+.+.+.
T Consensus       181 A~~g~gi~el~~~l~~~i~~~  201 (207)
T 2fv8_A          181 AKTKEGVREVFETATRAALQK  201 (207)
T ss_dssp             TTTCTTHHHHHHHHHHHHHSC
T ss_pred             CCCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999988743

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=100.00  E-value=5.7e-32  Score=195.44  Aligned_cols=168  Identities=24%  Similarity=0.323  Sum_probs=135.1

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-----------ccccceeeEEEEE-EECCeEEEEEEEeCCChhhhc
Q 028792            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESY-----------ISTIGVDFKIRTV-EQDGKTIKLQIWDTAGQERFR   71 (203)
Q Consensus         4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~-----------~~~~~~~~~~~~~-~~~~~~~~~~i~D~~g~~~~~   71 (203)
                      ..++.+||+++|++|+|||||++.+.+.. ...+           .++.+.++....+ ..++..+.+.+||+||++++.
T Consensus        10 ~~~~~~ki~vvG~~~~GKssL~~~l~~~~-~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~   88 (198)
T 3t1o_A           10 NREINFKIVYYGPGLSGKTTNLKWIYSKV-PEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN   88 (198)
T ss_dssp             TTEEEEEEEEECSTTSSHHHHHHHHHHTS-CGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS
T ss_pred             ccccccEEEEECCCCCCHHHHHHHHHhhc-cccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH
Confidence            45678999999999999999997666533 3332           2344444444334 456777899999999999999


Q ss_pred             hhhhccccCCcEEEEEEeCC------ChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC
Q 028792           72 TITSSYYRGAHGIIVVYDVT------DQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGI  145 (203)
Q Consensus        72 ~~~~~~~~~~d~~i~v~d~~------~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~  145 (203)
                      ..+..++..+|++|+|||++      +.+++..+..|+..+.. ...+.|+++|+||+|+.+.  ...+++.+++...++
T Consensus        89 ~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~-~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~  165 (198)
T 3t1o_A           89 ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGL-TLDDVPIVIQVNKRDLPDA--LPVEMVRAVVDPEGK  165 (198)
T ss_dssp             HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTC-CTTSSCEEEEEECTTSTTC--CCHHHHHHHHCTTCC
T ss_pred             HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcc-ccCCCCEEEEEEchhcccc--cCHHHHHHHHHhcCC
Confidence            99999999999999999999      45667777777766632 2357999999999998754  778889999999998


Q ss_pred             -CEEEEecCCCCCHHHHHHHHHHHHHHHhcc
Q 028792          146 -PFMETSAKSATNVEQAFMAMAASIKNRMAS  175 (203)
Q Consensus       146 -~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~~  175 (203)
                       +++++||++|.|++++|.+|.+.+.++..+
T Consensus       166 ~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~~  196 (198)
T 3t1o_A          166 FPVLEAVATEGKGVFETLKEVSRLVLARVAG  196 (198)
T ss_dssp             SCEEECBGGGTBTHHHHHHHHHHHHHHHHC-
T ss_pred             ceEEEEecCCCcCHHHHHHHHHHHHHHHhhc
Confidence             999999999999999999999999877653

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.98  E-value=2.2e-31  Score=192.80  Aligned_cols=165  Identities=17%  Similarity=0.310  Sum_probs=129.4

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCC-CCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCc
Q 028792            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLE-SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAH   82 (203)
Q Consensus         4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d   82 (203)
                      +....++|+|+|.+|+|||||+++|.+..+.. .+.++.+  +....+...+  +.+.+||+||++++...+..++..+|
T Consensus        13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d   88 (199)
T 4bas_A           13 QSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVG--YNVETFEKGR--VAFTVFDMGGAKKFRGLWETYYDNID   88 (199)
T ss_dssp             ---CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSS--EEEEEEEETT--EEEEEEEECCSGGGGGGGGGGCTTCS
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccc--eeEEEEEeCC--EEEEEEECCCCHhHHHHHHHHHhcCC
Confidence            56678999999999999999999999998877 6677776  3334444444  78999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhhcC--------CCCcEEEEEeCCCCCCCcccCHHHHHH------HHHHcCCCEE
Q 028792           83 GIIVVYDVTDQESFNNVKQWLNEIDRYAS--------ENVNKLLVGNKCDLTANKVVSYETAKA------FADEIGIPFM  148 (203)
Q Consensus        83 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~--------~~~p~iiv~nK~D~~~~~~~~~~~~~~------~~~~~~~~~~  148 (203)
                      ++|+|||+++++++..+..|+..+.....        .+.|+++|+||+|+.....  .+++.+      ++...+++++
T Consensus        89 ~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~  166 (199)
T 4bas_A           89 AVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKT--AAELVEILDLTTLMGDHPFVIF  166 (199)
T ss_dssp             EEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCC--HHHHHHHHTHHHHHTTSCEEEE
T ss_pred             EEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCC--HHHHHHHhcchhhccCCeeEEE
Confidence            99999999999999999888887754411        2689999999999976522  222221      1244667899


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHHHhc
Q 028792          149 ETSAKSATNVEQAFMAMAASIKNRMA  174 (203)
Q Consensus       149 ~~Sa~~~~gi~~~~~~l~~~~~~~~~  174 (203)
                      ++||++|.|++++|++|.+.+.++..
T Consensus       167 ~~Sa~~g~gv~~l~~~l~~~~~~~~~  192 (199)
T 4bas_A          167 ASNGLKGTGVHEGFSWLQETASRQSG  192 (199)
T ss_dssp             ECBTTTTBTHHHHHHHHHHHHHHHC-
T ss_pred             EeeCCCccCHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999887643

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.98  E-value=8.3e-31  Score=189.22  Aligned_cols=167  Identities=28%  Similarity=0.399  Sum_probs=135.3

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCC--CCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhh-hchhhhccccCCc
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDS--YLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER-FRTITSSYYRGAH   82 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~~d   82 (203)
                      +..++|+++|.+|||||||+++|.+..  +...+ ++++.++....+.+++..+.+.+||++|... +..+...++..+|
T Consensus         4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~   82 (192)
T 2cjw_A            4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD   82 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccc-cccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence            457999999999999999999999532  33332 3455566667778889889999999999765 4445667788899


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHH
Q 028792           83 GIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQA  161 (203)
Q Consensus        83 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~  161 (203)
                      ++++|||++++++|..+..|+..+.... ..+.|+++|+||+|+...+.+..++...++...+++++++||++|.|++++
T Consensus        83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~l  162 (192)
T 2cjw_A           83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKEL  162 (192)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHH
Confidence            9999999999999999999988776653 347899999999999766667777788888888899999999999999999


Q ss_pred             HHHHHHHHHHHh
Q 028792          162 FMAMAASIKNRM  173 (203)
Q Consensus       162 ~~~l~~~~~~~~  173 (203)
                      |.+|.+.+....
T Consensus       163 f~~l~~~~~~~~  174 (192)
T 2cjw_A          163 FEGIVRQVRLRR  174 (192)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhc
Confidence            999999886554

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.98  E-value=4.4e-32  Score=199.90  Aligned_cols=169  Identities=31%  Similarity=0.578  Sum_probs=148.0

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcE
Q 028792            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG   83 (203)
Q Consensus         4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   83 (203)
                      ...+.++|+++|.+|||||||+++|+.+.+...+.++.+.+.....+..++..+.+.+||+||++.+...+..++..+|+
T Consensus        11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   90 (221)
T 3gj0_A           11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQC   90 (221)
T ss_dssp             CCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCE
T ss_pred             CcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCE
Confidence            55678999999999999999999988777777777888888888888888889999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHH
Q 028792           84 IIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFM  163 (203)
Q Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  163 (203)
                      +++|||++++.++..+..|+..+..... +.|+++|+||+|+.+....  .+...++...+++++++||++|.|++++|.
T Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  167 (221)
T 3gj0_A           91 AIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPFL  167 (221)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHST-TCCEEEEEECTTSSSCSSC--GGGCCHHHHHTCEEEECBGGGTBTTTHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECCcccccccc--HHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            9999999999999999999999887654 6899999999998754332  245667788899999999999999999999


Q ss_pred             HHHHHHHHHhcc
Q 028792          164 AMAASIKNRMAS  175 (203)
Q Consensus       164 ~l~~~~~~~~~~  175 (203)
                      +|.+.+......
T Consensus       168 ~l~~~l~~~~~~  179 (221)
T 3gj0_A          168 WLARKLIGDPNL  179 (221)
T ss_dssp             HHHHHHHTCTTC
T ss_pred             HHHHHHHhCccc
Confidence            999998865443

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.98  E-value=4.7e-32  Score=193.60  Aligned_cols=163  Identities=33%  Similarity=0.629  Sum_probs=126.2

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      .+.++|+++|++|+|||||+++|..+.+...+.++.+..+. ..+..++..+.+.+||+||++++...+..++..+|+++
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   84 (182)
T 3bwd_D            6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI   84 (182)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence            46799999999999999999999988877666666654332 23445666678889999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCcc----------cCHHHHHHHHHHcCC-CEEEEecC
Q 028792           86 VVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTANKV----------VSYETAKAFADEIGI-PFMETSAK  153 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~  153 (203)
                      +|+|+++++++..+. .|+..+..... +.|+++|+||+|+.+...          +..++..+++..++. +++++||+
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~  163 (182)
T 3bwd_D           85 LAFSLISKASYENVSKKWIPELKHYAP-GVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSK  163 (182)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCT-TCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECC
Confidence            999999999999987 58888877644 789999999999876544          367788889998896 89999999


Q ss_pred             CCCCHHHHHHHHHHHHH
Q 028792          154 SATNVEQAFMAMAASIK  170 (203)
Q Consensus       154 ~~~gi~~~~~~l~~~~~  170 (203)
                      +|.|++++|++|.+.+.
T Consensus       164 ~~~gi~~l~~~l~~~i~  180 (182)
T 3bwd_D          164 SQENVKGVFDAAIRVVL  180 (182)
T ss_dssp             TCTTHHHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHHHHh
Confidence            99999999999998764

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.98  E-value=4.2e-31  Score=192.48  Aligned_cols=162  Identities=30%  Similarity=0.575  Sum_probs=137.6

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      ...++|+++|.+|+|||||+++|..+.+...+.++.. +.....+..++..+.+.+||+||++++...+..++..+|+++
T Consensus        28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i  106 (204)
T 4gzl_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL  106 (204)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence            4679999999999999999999998888777766664 344556667888889999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCcc------------cCHHHHHHHHHHcCC-CEEEEe
Q 028792           86 VVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTANKV------------VSYETAKAFADEIGI-PFMETS  151 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~------------~~~~~~~~~~~~~~~-~~~~~S  151 (203)
                      +|||++++.++..+. .|+..+.... .+.|+++|+||+|+.....            +..++...++...++ +++++|
T Consensus       107 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  185 (204)
T 4gzl_A          107 ICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS  185 (204)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEee
Confidence            999999999999987 6888887765 4789999999999876543            677888889999886 599999


Q ss_pred             cCCCCCHHHHHHHHHHHH
Q 028792          152 AKSATNVEQAFMAMAASI  169 (203)
Q Consensus       152 a~~~~gi~~~~~~l~~~~  169 (203)
                      |++|+|++++|++|.+.+
T Consensus       186 A~~g~gi~~l~~~l~~~~  203 (204)
T 4gzl_A          186 ALTQRGLKTVFDEAIRAV  203 (204)
T ss_dssp             TTTCTTHHHHHHHHHHTT
T ss_pred             CCCCCCHHHHHHHHHHHh
Confidence            999999999999998754

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.98  E-value=2.8e-30  Score=187.38  Aligned_cols=172  Identities=50%  Similarity=0.820  Sum_probs=150.1

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      ++.++|+++|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|++++...+..++..+++++
T Consensus         3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i   82 (199)
T 2f9l_A            3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL   82 (199)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence            57899999999999999999999998887777788877888888889998899999999999998888888889999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHH
Q 028792           86 VVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAM  165 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  165 (203)
                      +|+|+++..++..+..|+..+......+.|+++++||+|+.+......+++..++...++.++++||+++.|++++|++|
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l  162 (199)
T 2f9l_A           83 LVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNI  162 (199)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence            99999999999888888887766555578999999999997766677788889999999999999999999999999999


Q ss_pred             HHHHHHHhccCC
Q 028792          166 AASIKNRMASQP  177 (203)
Q Consensus       166 ~~~~~~~~~~~~  177 (203)
                      .+.+.+......
T Consensus       163 ~~~~~~~~~~~~  174 (199)
T 2f9l_A          163 LTEIYRIVSQKQ  174 (199)
T ss_dssp             HHHHHHHHHTSC
T ss_pred             HHHHHHHHhhcc
Confidence            999887654443

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.97  E-value=4.3e-30  Score=184.97  Aligned_cols=161  Identities=19%  Similarity=0.325  Sum_probs=129.4

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhcCC-CCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcE
Q 028792            5 YDYLFKLLLIGDSGVGKSCLLLRFADDS-YLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG   83 (203)
Q Consensus         5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   83 (203)
                      ..+.++|+|+|.+|+|||||+++|.+.. +...+.++.+  +....+..++  ..+.+||+||++++...+..++..+|+
T Consensus        18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~   93 (190)
T 2h57_A           18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQA   93 (190)
T ss_dssp             ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSE
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCE
Confidence            4567999999999999999999999877 4555556655  4455566665  789999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhcC---CCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----HcCCCEEEEecCCC
Q 028792           84 IIVVYDVTDQESFNNVKQWLNEIDRYAS---ENVNKLLVGNKCDLTANKVVSYETAKAFAD-----EIGIPFMETSAKSA  155 (203)
Q Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~  155 (203)
                      +++|+|+++++++..+..|+..+.....   .+.|+++|+||+|+.+.  ...+++.++..     ..+++++++||++|
T Consensus        94 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  171 (190)
T 2h57_A           94 IIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA--VTSVKVSQLLCLENIKDKPWHICASDAIKG  171 (190)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTTTT
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccC--CCHHHHHHHhChhhccCCceEEEEccCCCC
Confidence            9999999999999999888888765533   47899999999999753  34555555553     23568999999999


Q ss_pred             CCHHHHHHHHHHHHHH
Q 028792          156 TNVEQAFMAMAASIKN  171 (203)
Q Consensus       156 ~gi~~~~~~l~~~~~~  171 (203)
                      .|++++|++|.+.+.+
T Consensus       172 ~gi~~l~~~l~~~i~~  187 (190)
T 2h57_A          172 EGLQEGVDWLQDQIQT  187 (190)
T ss_dssp             BTHHHHHHHHHHHC--
T ss_pred             cCHHHHHHHHHHHHHH
Confidence            9999999999987754

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.97  E-value=4.7e-31  Score=185.39  Aligned_cols=156  Identities=24%  Similarity=0.415  Sum_probs=121.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEE
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVY   88 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (203)
                      ++|+++|++|+|||||+++|.++.+.. +.+|.+  +....+..++  +.+.+||+||++++...+..++.++|++++|+
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   75 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSS--CCEEEEECSS--CEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCc--eeEEEEEECC--EEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence            589999999999999999999877654 345554  3344444444  78999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----HcCCCEEEEecCCCCCHHHHH
Q 028792           89 DVTDQESFNNVKQWLNEIDRY-ASENVNKLLVGNKCDLTANKVVSYETAKAFAD-----EIGIPFMETSAKSATNVEQAF  162 (203)
Q Consensus        89 d~~~~~s~~~~~~~~~~l~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~~~  162 (203)
                      |+++++++..+..|+..+... ...+.|+++|+||+|+.+.  ...+++.....     ..+++++++||++|.|++++|
T Consensus        76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  153 (164)
T 1r8s_A           76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL  153 (164)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred             ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCC--CCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHH
Confidence            999999999998888776543 2246899999999999654  22233322211     124579999999999999999


Q ss_pred             HHHHHHHHH
Q 028792          163 MAMAASIKN  171 (203)
Q Consensus       163 ~~l~~~~~~  171 (203)
                      ++|.+.+.+
T Consensus       154 ~~l~~~i~~  162 (164)
T 1r8s_A          154 DWLSNQLRN  162 (164)
T ss_dssp             HHHHHHC--
T ss_pred             HHHHHHHhh
Confidence            999987753

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.97  E-value=1.2e-29  Score=181.85  Aligned_cols=160  Identities=24%  Similarity=0.431  Sum_probs=129.1

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      ...++|+++|++|+|||||+++|.++. ...+.++.+  .....+..++  ..+.+||+||+.++...+..++..+|+++
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~--~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   90 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLG--FNIKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLI   90 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSS--EEEEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCc--cceEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            467999999999999999999999877 555666665  3344555555  78999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----HcCCCEEEEecCCCCCHH
Q 028792           86 VVYDVTDQESFNNVKQWLNEIDRY-ASENVNKLLVGNKCDLTANKVVSYETAKAFAD-----EIGIPFMETSAKSATNVE  159 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~  159 (203)
                      +|+|+++++++..+..|+..+... ...+.|+++|+||+|+.+..  ..+++.+...     ..+++++++||++|.|++
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  168 (186)
T 1ksh_A           91 WVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL--SCNAIQEALELDSIRSHHWRIQGCSAVTGEDLL  168 (186)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCC--CHHHHHHHhChhhccCCceEEEEeeCCCCCCHH
Confidence            999999999999998888777554 22478999999999997642  3334333322     235689999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 028792          160 QAFMAMAASIKNR  172 (203)
Q Consensus       160 ~~~~~l~~~~~~~  172 (203)
                      ++|++|.+.+.++
T Consensus       169 ~l~~~l~~~i~~~  181 (186)
T 1ksh_A          169 PGIDWLLDDISSR  181 (186)
T ss_dssp             HHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999988653

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.97  E-value=3.9e-30  Score=181.79  Aligned_cols=159  Identities=23%  Similarity=0.370  Sum_probs=126.2

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      ...++|+++|++|+|||||+++|.++.+.. +.++.+  .....+.+++  ..+.+||+||+.++...+..++..+|+++
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   79 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIG--FNVETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVI   79 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSS--EEEEEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCc--cceEEEEECC--EEEEEEECCCChhhhHHHHHHhccCCEEE
Confidence            456999999999999999999999877643 345554  3445555654  78999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCcccCHHHHHHH-----HHHcCCCEEEEecCCCCCHH
Q 028792           86 VVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSYETAKAF-----ADEIGIPFMETSAKSATNVE  159 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~  159 (203)
                      +|+|+++++++..+..|+..+.... ..+.|+++|+||+|+.+...  ..++...     +...+++++++||++|.|++
T Consensus        80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  157 (171)
T 1upt_A           80 YVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT--SSEMANSLGLPALKDRKWQIFKTSATKGTGLD  157 (171)
T ss_dssp             EEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTGGGCTTSCEEEEECCTTTCTTHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCC--HHHHHHHhCchhccCCceEEEECcCCCCcCHH
Confidence            9999999999999888877765432 24789999999999976422  2222222     22335689999999999999


Q ss_pred             HHHHHHHHHHHH
Q 028792          160 QAFMAMAASIKN  171 (203)
Q Consensus       160 ~~~~~l~~~~~~  171 (203)
                      ++|++|.+.+.+
T Consensus       158 ~l~~~l~~~i~~  169 (171)
T 1upt_A          158 EAMEWLVETLKS  169 (171)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhh
Confidence            999999998754

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.97  E-value=1.1e-30  Score=187.83  Aligned_cols=160  Identities=24%  Similarity=0.392  Sum_probs=128.1

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      ...++|+|+|.+|+|||||+++|.+..+...+.++.+..+.  .+...+  +.+.+||+||+.++...+..++..+|+++
T Consensus        20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   95 (188)
T 1zd9_A           20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR--KITKGN--VTIKLWDIGGQPRFRSMWERYCRGVSAIV   95 (188)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE--EEEETT--EEEEEEEECCSHHHHTTHHHHHTTCSEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE--EEEeCC--EEEEEEECCCCHhHHHHHHHHHccCCEEE
Confidence            45799999999999999999999998887777777765544  344444  78999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----HcCCCEEEEecCCCCCHH
Q 028792           86 VVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSYETAKAFAD-----EIGIPFMETSAKSATNVE  159 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~  159 (203)
                      +|+|+++++++..+..|+..+.... ..+.|+++|+||+|+....  ..+++.+...     ..+++++++||++|.|++
T Consensus        96 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~  173 (188)
T 1zd9_A           96 YMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL--DEKELIEKMNLSAIQDREICCYSISCKEKDNID  173 (188)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCC--CHHHHHHHhChhhhccCCeeEEEEECCCCCCHH
Confidence            9999999999999988887775532 2578999999999997542  2233322221     224579999999999999


Q ss_pred             HHHHHHHHHHHH
Q 028792          160 QAFMAMAASIKN  171 (203)
Q Consensus       160 ~~~~~l~~~~~~  171 (203)
                      ++|++|.+.+.+
T Consensus       174 ~l~~~l~~~~~~  185 (188)
T 1zd9_A          174 ITLQWLIQHSKS  185 (188)
T ss_dssp             HHHHHHHHTCC-
T ss_pred             HHHHHHHHHHHh
Confidence            999999987654

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.97  E-value=5.3e-30  Score=185.85  Aligned_cols=156  Identities=22%  Similarity=0.288  Sum_probs=121.7

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      .+.++|+++|++|||||||+++|.++.+. .+.+|.+..  ...+..++  +.+.+||+||++.+...+..++..+|+++
T Consensus        23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i   97 (198)
T 1f6b_A           23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT--SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIV   97 (198)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS--CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce--eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEE
Confidence            34689999999999999999999987764 344555443  35566666  78999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH-----------------cCCCE
Q 028792           86 VVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSYETAKAFADE-----------------IGIPF  147 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~-----------------~~~~~  147 (203)
                      +|+|+++++++..+..|+..+.... ..+.|+++|+||+|+..  ....+++.+++..                 .++++
T Consensus        98 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (198)
T 1f6b_A           98 FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEV  175 (198)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc--cCCHHHHHHHhCcccccccccccccccccCceEEE
Confidence            9999999999999999888876542 24789999999999975  4566777776553                 23579


Q ss_pred             EEEecCCCCCHHHHHHHHHHH
Q 028792          148 METSAKSATNVEQAFMAMAAS  168 (203)
Q Consensus       148 ~~~Sa~~~~gi~~~~~~l~~~  168 (203)
                      ++|||++|+|++++|++|.+.
T Consensus       176 ~~~SA~~g~gv~~l~~~l~~~  196 (198)
T 1f6b_A          176 FMCSVLKRQGYGEGFRWMAQY  196 (198)
T ss_dssp             EECBTTTTBSHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            999999999999999999764

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.97  E-value=3.3e-29  Score=180.67  Aligned_cols=166  Identities=53%  Similarity=0.876  Sum_probs=148.1

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcE
Q 028792            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG   83 (203)
Q Consensus         4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   83 (203)
                      +.++.++|+++|++|||||||+++|.+..++..+.++.+.++....+.+++..+.+.+||++|..++...+..++..+++
T Consensus        25 ~~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~  104 (191)
T 1oix_A           25 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVG  104 (191)
T ss_dssp             CCSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCE
T ss_pred             ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCE
Confidence            45678999999999999999999999988888888888888888888899988889999999998888888888899999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHH
Q 028792           84 IIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFM  163 (203)
Q Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  163 (203)
                      +++|+|+++..++..+..|+..+........|+++++||.|+.+......+.+..++...++.++++||+++.|++++|+
T Consensus       105 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~  184 (191)
T 1oix_A          105 ALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQ  184 (191)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            99999999999998888888877665555789999999999976666777888899999999999999999999999999


Q ss_pred             HHHHHH
Q 028792          164 AMAASI  169 (203)
Q Consensus       164 ~l~~~~  169 (203)
                      +|.+.+
T Consensus       185 ~l~~~i  190 (191)
T 1oix_A          185 TILTEI  190 (191)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            998765

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.97  E-value=1.1e-29  Score=182.92  Aligned_cols=156  Identities=22%  Similarity=0.287  Sum_probs=126.4

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      .+.++|+++|++|+|||||+++|.++.+. .+.++.+.  ....+..++  +.+.+||+||+.++...+..++..+|+++
T Consensus        21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~--~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   95 (190)
T 1m2o_B           21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHP--TSEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIV   95 (190)
T ss_dssp             ---CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSC--EEEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCC--CeEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence            34679999999999999999999987764 34455543  345666776  78999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH------------cCCCEEEEec
Q 028792           86 VVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSYETAKAFADE------------IGIPFMETSA  152 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~Sa  152 (203)
                      +|+|+++++++..+..|+..+.... ..+.|+++|+||+|+.+  ....+++.++...            .+++++++||
T Consensus        96 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  173 (190)
T 1m2o_B           96 FLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSV  173 (190)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT--CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBT
T ss_pred             EEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC--CCCHHHHHHHhCCccccccccccccceEEEEEeEC
Confidence            9999999999999999888876542 25789999999999975  4556666665442            3467999999


Q ss_pred             CCCCCHHHHHHHHHHH
Q 028792          153 KSATNVEQAFMAMAAS  168 (203)
Q Consensus       153 ~~~~gi~~~~~~l~~~  168 (203)
                      ++|+|++++|++|.+.
T Consensus       174 ~~g~gi~~l~~~l~~~  189 (190)
T 1m2o_B          174 VMRNGYLEAFQWLSQY  189 (190)
T ss_dssp             TTTBSHHHHHHHHHTT
T ss_pred             CcCCCHHHHHHHHHhh
Confidence            9999999999999753

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.97  E-value=1.4e-30  Score=188.01  Aligned_cols=158  Identities=22%  Similarity=0.370  Sum_probs=119.9

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      .+.++|+++|++|+|||||+++|..+.+.. +.+|.+  +....+..++  +.+.+||+||.+++...+..++..+|+++
T Consensus        27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii  101 (192)
T 2b6h_A           27 KKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQNTQGLI  101 (192)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETT--EEEEEEEETT--EEEEEEECC-----CTTHHHHHHTCCEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCc--eeEEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            457999999999999999999999877653 345544  4444555555  78999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----HcCCCEEEEecCCCCCHH
Q 028792           86 VVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSYETAKAFAD-----EIGIPFMETSAKSATNVE  159 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~  159 (203)
                      +|+|+++++++..+..|+..+.... ..+.|+++|+||+|+.+.  ...+++.+...     ..+++++++||++|.|++
T Consensus       102 lv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~  179 (192)
T 2b6h_A          102 FVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNA--MPVSELTDKLGLQHLRSRTWYVQATCATQGTGLY  179 (192)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEECcCCCcCCHH
Confidence            9999999999999988887765432 246899999999999654  22233322211     123569999999999999


Q ss_pred             HHHHHHHHHHH
Q 028792          160 QAFMAMAASIK  170 (203)
Q Consensus       160 ~~~~~l~~~~~  170 (203)
                      ++|++|.+.+.
T Consensus       180 ~l~~~l~~~i~  190 (192)
T 2b6h_A          180 DGLDWLSHELS  190 (192)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHHh
Confidence            99999998764

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=1.1e-29  Score=182.33  Aligned_cols=159  Identities=21%  Similarity=0.339  Sum_probs=125.1

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      ...++|+++|.+|+|||||+++|.++.+. .+.+|.+  +....+..++  ..+.+||+||++++...+..++..+|+++
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   88 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIG--SNVEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI   88 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSC--SSCEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCc--cceEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            35799999999999999999999987766 4455554  3344555665  78999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----HcCCCEEEEecCCCCCHH
Q 028792           86 VVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSYETAKAFAD-----EIGIPFMETSAKSATNVE  159 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~  159 (203)
                      +|+|+++++++..+..|+..+.... ..+.|+++|+||+|+.+.  ...+++.+...     ..+++++++||++|.|++
T Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  166 (187)
T 1zj6_A           89 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLC  166 (187)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCC--CCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHH
Confidence            9999999999999999888876542 247899999999999753  33444544432     235689999999999999


Q ss_pred             HHHHHHHHHHHH
Q 028792          160 QAFMAMAASIKN  171 (203)
Q Consensus       160 ~~~~~l~~~~~~  171 (203)
                      ++|++|.+.+..
T Consensus       167 ~l~~~l~~~~~~  178 (187)
T 1zj6_A          167 QGLEWMMSRLKI  178 (187)
T ss_dssp             HHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHH
Confidence            999999987743

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.97  E-value=8.5e-30  Score=182.09  Aligned_cols=158  Identities=21%  Similarity=0.326  Sum_probs=124.3

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcE
Q 028792            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG   83 (203)
Q Consensus         4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   83 (203)
                      ...+.++|+++|.+|+|||||+++|.+..+ ..+.++.+..  ...+..++  ..+.+||+||++++...+..++..+|+
T Consensus        17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~   91 (181)
T 2h17_A           17 RGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSN--VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEF   91 (181)
T ss_dssp             ----CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSS--CEEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCE
T ss_pred             CCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCcee--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCE
Confidence            445679999999999999999999998877 4444555533  34555565  789999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----HcCCCEEEEecCCCCC
Q 028792           84 IIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSYETAKAFAD-----EIGIPFMETSAKSATN  157 (203)
Q Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~g  157 (203)
                      +++|+|+++++++..+..|+..+.... ..+.|+++|+||+|+.+.  ...+++.+...     ..+++++++||++|.|
T Consensus        92 ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~g  169 (181)
T 2h17_A           92 VIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEG  169 (181)
T ss_dssp             EEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECBTTTTBT
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC--CCHHHHHHHhCcccccCCceEEEEccCCCCcC
Confidence            999999999999999988887775542 347899999999998653  33444444332     2345899999999999


Q ss_pred             HHHHHHHHHHH
Q 028792          158 VEQAFMAMAAS  168 (203)
Q Consensus       158 i~~~~~~l~~~  168 (203)
                      ++++|++|.+.
T Consensus       170 i~~l~~~l~~~  180 (181)
T 2h17_A          170 LCQGLEWMMSR  180 (181)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHHhh
Confidence            99999999763

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.97  E-value=2.3e-29  Score=179.95  Aligned_cols=160  Identities=26%  Similarity=0.388  Sum_probs=124.5

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      ...++|+++|++|||||||+++|.+..+. .+.++.+  +....+..++  +.+.+||+||++.+...+..++..+|+++
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g--~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   88 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQG--FNIKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDILI   88 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETT--EEEEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCC--eEEEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence            56799999999999999999999987543 3345555  3344555665  78999999999999988999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----HcCCCEEEEecCCCCCHH
Q 028792           86 VVYDVTDQESFNNVKQWLNEIDRY-ASENVNKLLVGNKCDLTANKVVSYETAKAFAD-----EIGIPFMETSAKSATNVE  159 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~  159 (203)
                      +|+|+++++++..+..|+..+... ...+.|+++|+||+|+.+..  ..+++.+...     ..+++++++||++|+|++
T Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  166 (181)
T 1fzq_A           89 YVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA--PASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQ  166 (181)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCC--CHHHHHHHhCchhccCCceEEEEccCCCCCCHH
Confidence            999999999999998888776443 23578999999999997543  2333333221     224579999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 028792          160 QAFMAMAASIKNR  172 (203)
Q Consensus       160 ~~~~~l~~~~~~~  172 (203)
                      ++|++|.+.+.++
T Consensus       167 ~l~~~l~~~~~~~  179 (181)
T 1fzq_A          167 DGMNWVCKNVNAK  179 (181)
T ss_dssp             HHHHHHHHTC---
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999877543

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.97  E-value=3.5e-30  Score=185.21  Aligned_cols=160  Identities=20%  Similarity=0.333  Sum_probs=126.6

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      .+.++|+++|++|+|||||+++|..+.+.. +.+|.+  +....+..++  ..+.+||+||++++...+..++..+|+++
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   94 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVG--VNLETLQYKN--ISFEVWDLGGQTGVRPYWRCYFSDTDAVI   94 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTT--CCEEEEEETT--EEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCc--eEEEEEEECC--EEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence            467999999999999999999998877653 345554  3344555555  78999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCcccCHHHHHHHH-----HHcCCCEEEEecCCCCCHH
Q 028792           86 VVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSYETAKAFA-----DEIGIPFMETSAKSATNVE  159 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~  159 (203)
                      +|+|+++++++..+..|+..+.... ..+.|+++|+||+|+.+..  ..+++.+..     ...+++++++||++|.|++
T Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  172 (189)
T 2x77_A           95 YVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAA--SEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLV  172 (189)
T ss_dssp             EEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCC--CHHHHHHHhChhhccCCceEEEEccCCCccCHH
Confidence            9999999999999888877765542 2478999999999997542  223332221     2234579999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 028792          160 QAFMAMAASIKNR  172 (203)
Q Consensus       160 ~~~~~l~~~~~~~  172 (203)
                      ++|++|.+.+.++
T Consensus       173 ~l~~~l~~~i~~~  185 (189)
T 2x77_A          173 EGMDWLVERLREQ  185 (189)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999988654

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.97  E-value=4.9e-29  Score=178.12  Aligned_cols=160  Identities=23%  Similarity=0.364  Sum_probs=124.9

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      .+.++|+++|++|+|||||+++|.++.+ ..+.++.+  +....+..++  ..+.+||+||..++...+..++..+|+++
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   90 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIG--FNVETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVI   90 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTT--CCEEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCc--cceEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            4679999999999999999999998776 34445555  3344555555  78999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH-----cCCCEEEEecCCCCCHH
Q 028792           86 VVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSYETAKAFADE-----IGIPFMETSAKSATNVE  159 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~  159 (203)
                      +|+|+++++++..+..|+..+.... ..+.|+++|+||+|+.+.  ...+++.+....     .+++++++||++|.|++
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  168 (183)
T 1moz_A           91 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA--LSASEVSKELNLVELKDRSWSIVASSAIKGEGIT  168 (183)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEEccCCCCcCHH
Confidence            9999999999999988888776543 357899999999998653  334444443322     23479999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 028792          160 QAFMAMAASIKNR  172 (203)
Q Consensus       160 ~~~~~l~~~~~~~  172 (203)
                      ++|++|.+.+.++
T Consensus       169 ~l~~~l~~~~~~~  181 (183)
T 1moz_A          169 EGLDWLIDVIKEE  181 (183)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999988654

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.96  E-value=1.1e-28  Score=191.82  Aligned_cols=164  Identities=29%  Similarity=0.573  Sum_probs=142.0

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      ...++|+++|.+|+|||||+++|.++.+...+.+++...+ ...+..++..+.+.+||+||.+.+...+..++..+|+++
T Consensus       153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i  231 (332)
T 2wkq_A          153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL  231 (332)
T ss_dssp             TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEE
T ss_pred             cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEE
Confidence            3458999999999999999999998888777766665443 455677888889999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHcCC-CEEEEe
Q 028792           86 VVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTAN------------KVVSYETAKAFADEIGI-PFMETS  151 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~S  151 (203)
                      +|||++++.++..+. .|+..+..... +.|+++|+||+|+...            +.+..++...++...++ +++++|
T Consensus       232 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  310 (332)
T 2wkq_A          232 ICFSLVSPASFHHVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS  310 (332)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCT-TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhhCC-CCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEec
Confidence            999999999999987 58887776654 7899999999998653            45678888999999997 899999


Q ss_pred             cCCCCCHHHHHHHHHHHHHH
Q 028792          152 AKSATNVEQAFMAMAASIKN  171 (203)
Q Consensus       152 a~~~~gi~~~~~~l~~~~~~  171 (203)
                      |++|.|++++|.+|.+.+..
T Consensus       311 a~~~~gi~~l~~~l~~~~~~  330 (332)
T 2wkq_A          311 ALTQRGLKTVFDEAIRAVLC  330 (332)
T ss_dssp             TTTCTTHHHHHHHHHHHHHC
T ss_pred             CCCCcCHHHHHHHHHHHHhc
Confidence            99999999999999998764

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.96  E-value=1e-29  Score=182.27  Aligned_cols=164  Identities=24%  Similarity=0.428  Sum_probs=121.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcC--CCCCCCccccceeeEEEEEEE---CCeEEEEEEEeCCChhhhchhhhccccCCc
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFADD--SYLESYISTIGVDFKIRTVEQ---DGKTIKLQIWDTAGQERFRTITSSYYRGAH   82 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d   82 (203)
                      .++|+++|++|||||||+++|.+.  .+...+.+|.+.++....+..   ++..+.+.+||++|++++...+..++..+|
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   81 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA   81 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence            489999999999999999999984  444555677776665555433   234578999999999999888888999999


Q ss_pred             EEEEEEeCCCh-hhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccC---HHHHHHHHHHcCCC----EEEEecCC
Q 028792           83 GIIVVYDVTDQ-ESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVS---YETAKAFADEIGIP----FMETSAKS  154 (203)
Q Consensus        83 ~~i~v~d~~~~-~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~---~~~~~~~~~~~~~~----~~~~Sa~~  154 (203)
                      ++++|+|++++ .++..+..|+..+..... +.|+++|+||+|+.+.....   .+....++..++++    ++++||++
T Consensus        82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  160 (184)
T 2zej_A           82 LYLAVYDLSKGQAEVDAMKPWLFNIKARAS-SSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATE  160 (184)
T ss_dssp             EEEEEEEGGGCHHHHHTHHHHHHHHHHHCT-TCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTS
T ss_pred             EEEEEEeCCcchhHHHHHHHHHHHHHhhCC-CCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEeccc
Confidence            99999999987 578889999988866543 68999999999987543322   23344555556776    99999999


Q ss_pred             CC-CHHHHHHHHHHHHHHH
Q 028792          155 AT-NVEQAFMAMAASIKNR  172 (203)
Q Consensus       155 ~~-gi~~~~~~l~~~~~~~  172 (203)
                      +. +++++++.|.+.+.+.
T Consensus       161 ~~~~~~~l~~~i~~~~~~~  179 (184)
T 2zej_A          161 ESDALAKLRKTIINESLNF  179 (184)
T ss_dssp             CCHHHHHHHHHHHHHHHCC
T ss_pred             CchhHHHHHHHHHHHHhcc
Confidence            96 9999999998877643

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.96  E-value=2.9e-29  Score=181.56  Aligned_cols=161  Identities=20%  Similarity=0.261  Sum_probs=120.4

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEE--EEEEE-CCeEEEEEEEeCCChhhhchhh---hcc
Q 028792            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKI--RTVEQ-DGKTIKLQIWDTAGQERFRTIT---SSY   77 (203)
Q Consensus         4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~i~D~~g~~~~~~~~---~~~   77 (203)
                      +..+.+||+++|.+|||||||++++.+... ..  ++.+.++..  ....+ ++..+.+.+||+||++++....   ..+
T Consensus        16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~   92 (196)
T 3llu_A           16 FQGSKPRILLMGLRRSGKSSIQKVVFHKMS-PN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMI   92 (196)
T ss_dssp             ----CCEEEEEESTTSSHHHHHHHHHSCCC-GG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHH
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHHhcCC-Cc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccc
Confidence            556789999999999999999998887533 22  333333332  22223 2556889999999999887766   789


Q ss_pred             ccCCcEEEEEEeCCCh--hhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC-------cccCHHHHHHHHH----HcC
Q 028792           78 YRGAHGIIVVYDVTDQ--ESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN-------KVVSYETAKAFAD----EIG  144 (203)
Q Consensus        78 ~~~~d~~i~v~d~~~~--~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~-------~~~~~~~~~~~~~----~~~  144 (203)
                      +..+|++|+|||++++  +++..+..|+..+.... .+.|+++|+||+|+.+.       +.+..+...+++.    ..+
T Consensus        93 ~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  171 (196)
T 3llu_A           93 FRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVN-PDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLH  171 (196)
T ss_dssp             HHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHC-TTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSC
T ss_pred             cccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcC-CCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCC
Confidence            9999999999999997  66666777776664433 47999999999998652       2344455667777    667


Q ss_pred             CCEEEEecCCCCCHHHHHHHHHHHH
Q 028792          145 IPFMETSAKSATNVEQAFMAMAASI  169 (203)
Q Consensus       145 ~~~~~~Sa~~~~gi~~~~~~l~~~~  169 (203)
                      ++++++||++ .|++++|..|++.+
T Consensus       172 ~~~~e~Sa~~-~~v~~~f~~l~~~l  195 (196)
T 3llu_A          172 LSFYLTSIYD-HSIFEAFSKVVQKL  195 (196)
T ss_dssp             EEEEEECTTS-THHHHHHHHHHHHT
T ss_pred             cceEEEEech-hhHHHHHHHHHHHh
Confidence            8999999999 99999999998864

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.93  E-value=1.2e-31  Score=195.28  Aligned_cols=162  Identities=30%  Similarity=0.598  Sum_probs=134.9

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      .+.++|+++|.+|+|||||+++|.++.+...+.++....+ ...+..++..+.+.+||+||++++...+..++..+|+++
T Consensus        28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii  106 (204)
T 3th5_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL  106 (204)
Confidence            4679999999999999999999998887766666654333 344556666788899999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCc------------ccCHHHHHHHHHHcCC-CEEEEe
Q 028792           86 VVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTANK------------VVSYETAKAFADEIGI-PFMETS  151 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~S  151 (203)
                      +|+|++++.++..+. .|+..+..... +.|+++|+||+|+.+..            .+..++..+++...++ +++++|
T Consensus       107 lv~D~~~~~s~~~~~~~~~~~l~~~~~-~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vS  185 (204)
T 3th5_A          107 ICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS  185 (204)
Confidence            999999999999887 68777765543 68999999999997543            4455667778888887 899999


Q ss_pred             cCCCCCHHHHHHHHHHHH
Q 028792          152 AKSATNVEQAFMAMAASI  169 (203)
Q Consensus       152 a~~~~gi~~~~~~l~~~~  169 (203)
                      |++|.|++++|++|.+.+
T Consensus       186 A~~g~gi~~l~~~l~~~i  203 (204)
T 3th5_A          186 ALTQRGLKTVFDEAIRAV  203 (204)
Confidence            999999999999998765

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.96  E-value=1.7e-28  Score=174.45  Aligned_cols=161  Identities=19%  Similarity=0.169  Sum_probs=123.1

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEE
Q 028792            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI   84 (203)
Q Consensus         5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (203)
                      .++.++|+++|++|+|||||+++|.+..+...+.++.+.++....+..++  ..+.+||+||+.++...+...+..+|++
T Consensus         5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   82 (178)
T 2lkc_A            5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVND--KKITFLDTPGHEAFTTMRARGAQVTDIV   82 (178)
T ss_dssp             CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETT--EEEEESCCCSSSSSSCSCCSSCCCCCEE
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCC--ceEEEEECCCCHHHHHHHHHHHhhCCEE
Confidence            45779999999999999999999999888777666666666666677777  5678999999999998888899999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHc-------C--CCEEEEecCCC
Q 028792           85 IVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEI-------G--IPFMETSAKSA  155 (203)
Q Consensus        85 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~-------~--~~~~~~Sa~~~  155 (203)
                      ++|+|++++.....    +..+......+.|+++|+||+|+...   ..+.........       +  ++++++||++|
T Consensus        83 i~v~d~~~~~~~~~----~~~l~~~~~~~~p~ilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  155 (178)
T 2lkc_A           83 ILVVAADDGVMPQT----VEAINHAKAANVPIIVAINKMDKPEA---NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTK  155 (178)
T ss_dssp             EEEEETTCCCCHHH----HHHHHHHGGGSCCEEEEEETTTSSCS---CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSS
T ss_pred             EEEEECCCCCcHHH----HHHHHHHHhCCCCEEEEEECccCCcC---CHHHHHHHHHhcCcChhHcCCcccEEEEecCCC
Confidence            99999988432211    12222222346899999999998753   223333332222       1  47999999999


Q ss_pred             CCHHHHHHHHHHHHHHHhc
Q 028792          156 TNVEQAFMAMAASIKNRMA  174 (203)
Q Consensus       156 ~gi~~~~~~l~~~~~~~~~  174 (203)
                      .|++++|++|.+.+...+.
T Consensus       156 ~gv~~l~~~l~~~~~~~~~  174 (178)
T 2lkc_A          156 EGLDHLLEMILLVSEMEEL  174 (178)
T ss_dssp             HHHHHHHHHHHHHHHHTTT
T ss_pred             CCHHHHHHHHHHhhhhhcc
Confidence            9999999999998876544

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.96  E-value=3.3e-28  Score=180.05  Aligned_cols=167  Identities=22%  Similarity=0.183  Sum_probs=119.4

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChh------hh---chhhh
Q 028792            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE------RF---RTITS   75 (203)
Q Consensus         5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~------~~---~~~~~   75 (203)
                      .+..++|+|+|.+|+|||||+++|++..+.....+..+.......+..++  ..+.+||+||..      +.   ...+.
T Consensus        26 ~~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~  103 (228)
T 2qu8_A           26 NPHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTTIT  103 (228)
T ss_dssp             CTTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHHHH
Confidence            45679999999999999999999998876533333334444444444555  678999999983      21   11123


Q ss_pred             ccccCCcEEEEEEeCCChhhHH--HHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHH---HHHHHHHHcC--CCEE
Q 028792           76 SYYRGAHGIIVVYDVTDQESFN--NVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYE---TAKAFADEIG--IPFM  148 (203)
Q Consensus        76 ~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~---~~~~~~~~~~--~~~~  148 (203)
                      .++..+|++++|+|++++.++.  ....|+..+.... .+.|+++|+||+|+.+.+.+..+   ...+++...+  ++++
T Consensus       104 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (228)
T 2qu8_A          104 ALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVF-SNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFS  182 (228)
T ss_dssp             HHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC--CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEE
T ss_pred             HhhccccEEEEEEecccccCcchHHHHHHHHHHHHhh-cCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEE
Confidence            4467889999999999987764  2234555444332 36899999999999876666544   4566777776  8999


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHHHhc
Q 028792          149 ETSAKSATNVEQAFMAMAASIKNRMA  174 (203)
Q Consensus       149 ~~Sa~~~~gi~~~~~~l~~~~~~~~~  174 (203)
                      ++||++|.|++++|.+|.+.+.+.+.
T Consensus       183 ~~SA~~g~gi~~l~~~l~~~i~~~~~  208 (228)
T 2qu8_A          183 SFSTLTGVGVEQAKITACELLKNDQA  208 (228)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred             EEecccCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999876653

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.96  E-value=4.1e-29  Score=187.89  Aligned_cols=165  Identities=26%  Similarity=0.404  Sum_probs=122.2

Q ss_pred             CCceeeEEEEEcCC---------CCcHHHHHHHHhc---CCCCCCCcccc-ceeeEEEEE--------------EECCeE
Q 028792            4 EYDYLFKLLLIGDS---------GVGKSCLLLRFAD---DSYLESYISTI-GVDFKIRTV--------------EQDGKT   56 (203)
Q Consensus         4 ~~~~~~~i~i~G~~---------~~GKSsli~~l~~---~~~~~~~~~~~-~~~~~~~~~--------------~~~~~~   56 (203)
                      ..++.+||+|+|.+         |||||||+++|.+   ..+...+.+++ +.++....+              ..++..
T Consensus        15 ~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~   94 (255)
T 3c5h_A           15 YFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE   94 (255)
T ss_dssp             SCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC--------
T ss_pred             CCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcE
Confidence            45678999999999         9999999999998   55555555543 333322221              135566


Q ss_pred             EEEEEEe-----------------------CCChhhhchhhhcccc---------------------CCcEEEEEEeCCC
Q 028792           57 IKLQIWD-----------------------TAGQERFRTITSSYYR---------------------GAHGIIVVYDVTD   92 (203)
Q Consensus        57 ~~~~i~D-----------------------~~g~~~~~~~~~~~~~---------------------~~d~~i~v~d~~~   92 (203)
                      +.+.+||                       ++|++++..++..++.                     ++|++|+|||+++
T Consensus        95 ~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~  174 (255)
T 3c5h_A           95 CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSR  174 (255)
T ss_dssp             -CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC
T ss_pred             EEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCC
Confidence            8899999                       5566666666666666                     7999999999999


Q ss_pred             h--hhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH-cCCCEEEEecCCCCCHHHHHHHHHHH
Q 028792           93 Q--ESFNNVKQWLNEIDRY-ASENVNKLLVGNKCDLTANKVVSYETAKAFADE-IGIPFMETSAKSATNVEQAFMAMAAS  168 (203)
Q Consensus        93 ~--~s~~~~~~~~~~l~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gi~~~~~~l~~~  168 (203)
                      +  ++++.+..|+..+... ...+.|+++|+||+|+...+.+  ++..+++.. .+++++++||++|.|++++|.+|.+.
T Consensus       175 ~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~~  252 (255)
T 3c5h_A          175 GMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQL  252 (255)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred             CchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            8  9999999999888665 3346899999999998654443  566677766 47899999999999999999999887


Q ss_pred             HH
Q 028792          169 IK  170 (203)
Q Consensus       169 ~~  170 (203)
                      +.
T Consensus       253 l~  254 (255)
T 3c5h_A          253 ID  254 (255)
T ss_dssp             HH
T ss_pred             hc
Confidence            63

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.96  E-value=4.7e-28  Score=170.61  Aligned_cols=153  Identities=20%  Similarity=0.263  Sum_probs=114.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhc------hhhhcccc--
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR------TITSSYYR--   79 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~~--   79 (203)
                      .++|+++|++|+|||||+++|.+..+.....++.+.+.....+..++  ..+.+||+||+.++.      .....++.  
T Consensus         3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~   80 (165)
T 2wji_A            3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE   80 (165)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence            58999999999999999999998776555555555555556666666  678999999987664      22344443  


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHH
Q 028792           80 GAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVE  159 (203)
Q Consensus        80 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  159 (203)
                      ++|++++|+|+++.+.   ...|+..+..   .+.|+++|+||+|+.....+.. +..+++..++++++++||++|+|++
T Consensus        81 ~~~~~i~v~D~~~~~~---~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA~~~~~v~  153 (165)
T 2wji_A           81 KPDLVVNIVDATALER---NLYLTLQLME---MGANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAKKMGIE  153 (165)
T ss_dssp             CCSEEEEEEETTCHHH---HHHHHHHHHH---TTCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECBGGGTBSHH
T ss_pred             CCCEEEEEecCCchhH---hHHHHHHHHh---cCCCEEEEEEchHhccccChhh-HHHHHHHHhCCCEEEEEcCCCCCHH
Confidence            7999999999988654   3446555544   2689999999999864333332 3567778888999999999999999


Q ss_pred             HHHHHHHHHH
Q 028792          160 QAFMAMAASI  169 (203)
Q Consensus       160 ~~~~~l~~~~  169 (203)
                      ++|.+|.+.+
T Consensus       154 ~l~~~l~~~~  163 (165)
T 2wji_A          154 ELKKAISIAV  163 (165)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHh
Confidence            9999998765

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.95  E-value=3.4e-27  Score=172.77  Aligned_cols=161  Identities=17%  Similarity=0.245  Sum_probs=112.8

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCe-EEEEEEEeCCChhhhch-hhhccccCCc
Q 028792            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGK-TIKLQIWDTAGQERFRT-ITSSYYRGAH   82 (203)
Q Consensus         5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~g~~~~~~-~~~~~~~~~d   82 (203)
                      ..+.++|+++|++|+|||||+++|.+..+...+.++ ...+.  .+.+++. .+.+.+||+||+.++.. .+..++..+|
T Consensus         4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   80 (214)
T 2fh5_B            4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSI-TDSSA--IYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSAR   80 (214)
T ss_dssp             ----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCC-SCEEE--EEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEE
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCc-ceeeE--EEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCC
Confidence            346799999999999999999999988877665433 33333  2555543 47899999999999887 7888899999


Q ss_pred             EEEEEEeCCChh-hHHHHHH-HHHHHHhh--cCCCCcEEEEEeCCCCCCCcccC--HHHHHHHHH---------------
Q 028792           83 GIIVVYDVTDQE-SFNNVKQ-WLNEIDRY--ASENVNKLLVGNKCDLTANKVVS--YETAKAFAD---------------  141 (203)
Q Consensus        83 ~~i~v~d~~~~~-s~~~~~~-~~~~l~~~--~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~---------------  141 (203)
                      ++++|+|+++.. ++..... |...+...  ...+.|+++|+||+|+.......  .+.+.+...               
T Consensus        81 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~  160 (214)
T 2fh5_B           81 AVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDS  160 (214)
T ss_dssp             EEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC--------
T ss_pred             EEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccC
Confidence            999999999854 4555555 44334332  23468999999999997643211  111111111               


Q ss_pred             ------------------Hc--CCCEEEEecCCC------CCHHHHHHHHHHH
Q 028792          142 ------------------EI--GIPFMETSAKSA------TNVEQAFMAMAAS  168 (203)
Q Consensus       142 ------------------~~--~~~~~~~Sa~~~------~gi~~~~~~l~~~  168 (203)
                                        .+  ++++++|||++|      .|++++|.+|.+.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~  213 (214)
T 2fh5_B          161 SSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI  213 (214)
T ss_dssp             ----CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred             CccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence                              11  567999999999      9999999999875

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.95  E-value=4.3e-27  Score=181.26  Aligned_cols=159  Identities=22%  Similarity=0.350  Sum_probs=125.2

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCC---CCCccccceeeEEEEEEECCeEEEEEEEeCCChhhh-----chhhhccc
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFADDSYL---ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF-----RTITSSYY   78 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-----~~~~~~~~   78 (203)
                      ..+||+++|.+|||||||+++|+++...   ..+.+|.+..+.  .+.+++ .+.+.+||+||++.+     ...+..++
T Consensus         2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~--~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~   78 (307)
T 3r7w_A            2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS--HLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF   78 (307)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEE--EEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEE--EEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence            4589999999999999999999976332   234455554444  344433 488999999999888     67788888


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhc--CCCCcEEEEEeCCCCCC--Ccc----cCHHHHHHHHHHcC---CCE
Q 028792           79 RGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA--SENVNKLLVGNKCDLTA--NKV----VSYETAKAFADEIG---IPF  147 (203)
Q Consensus        79 ~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~~p~iiv~nK~D~~~--~~~----~~~~~~~~~~~~~~---~~~  147 (203)
                      .++|++|+|||+++++++..+..|...+....  ..+.|+++|+||+|+.+  .+.    ...+++.+++..++   +++
T Consensus        79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~  158 (307)
T 3r7w_A           79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIG  158 (307)
T ss_dssp             TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEE
T ss_pred             ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEE
Confidence            99999999999999999999877765554332  34699999999999976  333    45577888888887   789


Q ss_pred             EEEecCCCCCHHHHHHHHHHHH
Q 028792          148 METSAKSATNVEQAFMAMAASI  169 (203)
Q Consensus       148 ~~~Sa~~~~gi~~~~~~l~~~~  169 (203)
                      +++||++ .++.++|..+++.+
T Consensus       159 ~~tSa~~-~~i~e~~~~iv~~l  179 (307)
T 3r7w_A          159 FPTSIWD-ESLYKAWSQIVCSL  179 (307)
T ss_dssp             EECCTTS-SHHHHHHHHHHHTT
T ss_pred             EEeeecC-ChHHHHHHHHHHHH
Confidence            9999999 89999999887643

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.95  E-value=6.2e-28  Score=187.51  Aligned_cols=158  Identities=23%  Similarity=0.382  Sum_probs=119.0

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEE
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV   86 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (203)
                      ..++|+|+|.+|+|||||+++|.+..+... .+|.+..  ...+...+  +.+.+||+||++.+...+..++..+|++|+
T Consensus       164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~ad~vil  238 (329)
T 3o47_A          164 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN--VETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIF  238 (329)
T ss_dssp             CSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEE--EEEEEETT--EEEEEEECC-----CCSHHHHHTTEEEEEE
T ss_pred             CcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceE--EEEEecCc--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence            457999999999999999999998876543 2444433  33444454  789999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH-----cCCCEEEEecCCCCCHHH
Q 028792           87 VYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSYETAKAFADE-----IGIPFMETSAKSATNVEQ  160 (203)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~~  160 (203)
                      |||+++++++..+..++..+.... ..+.|+++|+||+|+.+..  ..+++......     .+++++++||++|.|+++
T Consensus       239 V~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~e  316 (329)
T 3o47_A          239 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYE  316 (329)
T ss_dssp             EEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHH
T ss_pred             EEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCccc--CHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHH
Confidence            999999999999888776664432 3478999999999997543  22333322221     235699999999999999


Q ss_pred             HHHHHHHHHHH
Q 028792          161 AFMAMAASIKN  171 (203)
Q Consensus       161 ~~~~l~~~~~~  171 (203)
                      +|++|.+.+.+
T Consensus       317 l~~~l~~~l~~  327 (329)
T 3o47_A          317 GLDWLSNQLRN  327 (329)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHHHh
Confidence            99999998753

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.95  E-value=1.9e-27  Score=170.75  Aligned_cols=158  Identities=23%  Similarity=0.327  Sum_probs=116.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCC-----------hhhhchhhhcc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG-----------QERFRTITSSY   77 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g-----------~~~~~~~~~~~   77 (203)
                      ++|+++|++|+|||||+++|.+..+...+.++.+...  ..+...    .+.+||+||           ++.+...+..+
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~--~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~   75 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKI--IEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF   75 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSC--EEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCcccee--EEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence            7999999999999999999999887766666554333  333333    578999999           56666667667


Q ss_pred             ccC-CcEEEEEEeCCChhhHHHH-HHHHHH---------HHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCC
Q 028792           78 YRG-AHGIIVVYDVTDQESFNNV-KQWLNE---------IDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIP  146 (203)
Q Consensus        78 ~~~-~d~~i~v~d~~~~~s~~~~-~~~~~~---------l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~  146 (203)
                      +.. ++++++|+++.|..++..+ ..|...         +......+.|+++|+||+|+....   .+...+++..++.+
T Consensus        76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~  152 (190)
T 2cxx_A           76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV---QEVINFLAEKFEVP  152 (190)
T ss_dssp             HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH---HHHHHHHHHHHTCC
T ss_pred             HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH---HHHHHHHHHHhhhh
Confidence            666 7766666666666677665 345431         222223478999999999987654   55677788888764


Q ss_pred             -------EEEEecCCCCCHHHHHHHHHHHHHHHhcc
Q 028792          147 -------FMETSAKSATNVEQAFMAMAASIKNRMAS  175 (203)
Q Consensus       147 -------~~~~Sa~~~~gi~~~~~~l~~~~~~~~~~  175 (203)
                             ++++||++|.|++++|++|.+.+.+.+.+
T Consensus       153 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~~  188 (190)
T 2cxx_A          153 LSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQGR  188 (190)
T ss_dssp             GGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC---
T ss_pred             hhccCCcEEEEecCCCCCHHHHHHHHHHhcchhhcc
Confidence                   79999999999999999999988765543

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.94  E-value=5e-27  Score=169.33  Aligned_cols=159  Identities=16%  Similarity=0.213  Sum_probs=108.6

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCC----------hhhhchhh
Q 028792            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG----------QERFRTIT   74 (203)
Q Consensus         5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~~~   74 (203)
                      .+..++|+++|++|+|||||+++|.+..+...+.++.+.+........++   .+.+||+||          .+.+...+
T Consensus        20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~   96 (195)
T 1svi_A           20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMI   96 (195)
T ss_dssp             CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHH
Confidence            45679999999999999999999998875554445544444444444444   588999999          66777777


Q ss_pred             hccccCC---cEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCH--HHHHH-HHHHcCCCEE
Q 028792           75 SSYYRGA---HGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSY--ETAKA-FADEIGIPFM  148 (203)
Q Consensus        75 ~~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~--~~~~~-~~~~~~~~~~  148 (203)
                      ..++..+   |++++|+|++++.++.... ++..+..   .+.|+++|+||+|+.+......  +++.+ +....+++++
T Consensus        97 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (195)
T 1svi_A           97 ETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELI  172 (195)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEE
T ss_pred             HHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceE
Confidence            7777666   9999999999877665432 2222222   3689999999999976544322  22222 2222357899


Q ss_pred             EEecCCCCCHHHHHHHHHHHHH
Q 028792          149 ETSAKSATNVEQAFMAMAASIK  170 (203)
Q Consensus       149 ~~Sa~~~~gi~~~~~~l~~~~~  170 (203)
                      ++||++|.|++++|++|.+.+.
T Consensus       173 ~~Sa~~~~gv~~l~~~l~~~l~  194 (195)
T 1svi_A          173 LFSSETKKGKDEAWGAIKKMIN  194 (195)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHT
T ss_pred             EEEccCCCCHHHHHHHHHHHhc
Confidence            9999999999999999988763

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.94  E-value=3.7e-27  Score=169.07  Aligned_cols=160  Identities=19%  Similarity=0.249  Sum_probs=122.6

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhc------hhhhccc
Q 028792            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR------TITSSYY   78 (203)
Q Consensus         5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~   78 (203)
                      ..+.++|+++|++|+|||||+++|.+..+.....++.+.+.....+..++  ..+.+||+||...+.      ..+..++
T Consensus         4 ~~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~   81 (188)
T 2wjg_A            4 HMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYI   81 (188)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHH
Confidence            34678999999999999999999998766555556666666666677766  778999999987664      2344455


Q ss_pred             c--CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCC
Q 028792           79 R--GAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSAT  156 (203)
Q Consensus        79 ~--~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  156 (203)
                      .  .+|++++|+|.++   +.....|+..+..   .+.|+++|+||+|+.....+. +...++++..+++++++||+++.
T Consensus        82 ~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~  154 (188)
T 2wjg_A           82 INEKPDLVVNIVDATA---LERNLYLTLQLME---MGANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKKM  154 (188)
T ss_dssp             HHHCCSEEEEEEEGGG---HHHHHHHHHHHHT---TTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGTB
T ss_pred             hccCCCEEEEEecchh---HHHHHHHHHHHHh---cCCCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEEEEecCCC
Confidence            3  5999999999875   3445566665544   368999999999986443333 34667788889999999999999


Q ss_pred             CHHHHHHHHHHHHHHHh
Q 028792          157 NVEQAFMAMAASIKNRM  173 (203)
Q Consensus       157 gi~~~~~~l~~~~~~~~  173 (203)
                      |++++|++|.+.+.+..
T Consensus       155 ~v~~l~~~i~~~~~~~~  171 (188)
T 2wjg_A          155 GIEELKKAISIAVKDKK  171 (188)
T ss_dssp             SHHHHHHHHHHHHTTC-
T ss_pred             CHHHHHHHHHHHHHhcc
Confidence            99999999999876543

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.94  E-value=1.8e-26  Score=173.54  Aligned_cols=156  Identities=19%  Similarity=0.191  Sum_probs=119.5

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchh------hhccc-
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI------TSSYY-   78 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~------~~~~~-   78 (203)
                      .+.++|+++|.+|+|||||+++|.+..+.....++.+.+.....+...+  ..+.+||+||...+...      ...++ 
T Consensus         3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~   80 (258)
T 3a1s_A            3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLL   80 (258)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence            4679999999999999999999998776544455555555555555555  78999999998766542      24444 


Q ss_pred             -cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCC
Q 028792           79 -RGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATN  157 (203)
Q Consensus        79 -~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  157 (203)
                       ..+|++++|+|+++.++..   .|...+..   .+.|+++++||+|+.....+.. +...++..++++++++||++|.|
T Consensus        81 ~~~~d~ii~V~D~t~~~~~~---~~~~~l~~---~~~pvilv~NK~Dl~~~~~i~~-~~~~l~~~lg~~vi~~SA~~g~g  153 (258)
T 3a1s_A           81 KGDADLVILVADSVNPEQSL---YLLLEILE---MEKKVILAMTAIDEAKKTGMKI-DRYELQKHLGIPVVFTSSVTGEG  153 (258)
T ss_dssp             HSCCSEEEEEEETTSCHHHH---HHHHHHHT---TTCCEEEEEECHHHHHHTTCCB-CHHHHHHHHCSCEEECCTTTCTT
T ss_pred             hcCCCEEEEEeCCCchhhHH---HHHHHHHh---cCCCEEEEEECcCCCCccchHH-HHHHHHHHcCCCEEEEEeeCCcC
Confidence             5899999999999876533   34444433   3689999999999865433332 36778888899999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 028792          158 VEQAFMAMAASIK  170 (203)
Q Consensus       158 i~~~~~~l~~~~~  170 (203)
                      ++++|++|.+.+.
T Consensus       154 i~el~~~i~~~~~  166 (258)
T 3a1s_A          154 LEELKEKIVEYAQ  166 (258)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999988764

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.94  E-value=1.7e-26  Score=161.45  Aligned_cols=150  Identities=19%  Similarity=0.231  Sum_probs=106.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCC-CCCccccceeeEEEEEEECCeEEEEEEEeCCChhh-------hchhhhccccC
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDSYL-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER-------FRTITSSYYRG   80 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------~~~~~~~~~~~   80 (203)
                      ++|+++|++|+|||||+++|.+.... ....++.+.+.....+..++  ..+.+||+||...       +...+..++..
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   79 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDR--GRFLLVDTGGLWSGDKWEKKIQEKVDRALED   79 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETT--EEEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCC--ceEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence            68999999999999999999987643 23334444455566666666  4788999999876       34455667899


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-CEEEEecCCCCCHH
Q 028792           81 AHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGI-PFMETSAKSATNVE  159 (203)
Q Consensus        81 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~  159 (203)
                      +|++++|+|++++.+... ..+...+..   .+.|+++|+||+|+.+..    ++..+++ ..++ +++++||++|.|++
T Consensus        80 ~~~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~p~ilv~nK~Dl~~~~----~~~~~~~-~~~~~~~~~~Sa~~~~gv~  150 (161)
T 2dyk_A           80 AEVVLFAVDGRAELTQAD-YEVAEYLRR---KGKPVILVATKVDDPKHE----LYLGPLY-GLGFGDPIPTSSEHARGLE  150 (161)
T ss_dssp             CSEEEEEEESSSCCCHHH-HHHHHHHHH---HTCCEEEEEECCCSGGGG----GGCGGGG-GGSSCSCEECBTTTTBSHH
T ss_pred             CCEEEEEEECCCcccHhH-HHHHHHHHh---cCCCEEEEEECcccccch----HhHHHHH-hCCCCCeEEEecccCCChH
Confidence            999999999998544322 112222222   368999999999986542    2334444 5676 89999999999999


Q ss_pred             HHHHHHHHHH
Q 028792          160 QAFMAMAASI  169 (203)
Q Consensus       160 ~~~~~l~~~~  169 (203)
                      ++|++|.+.+
T Consensus       151 ~l~~~l~~~l  160 (161)
T 2dyk_A          151 ELLEAIWERL  160 (161)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhC
Confidence            9999998753

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.94  E-value=5.5e-27  Score=166.28  Aligned_cols=154  Identities=21%  Similarity=0.238  Sum_probs=112.8

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCC-CCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchh--------hhcc
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFADDSYL-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI--------TSSY   77 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~   77 (203)
                      ..++|+++|.+|+|||||+++|.+.... ....++.+.++....+..++  ..+.+||+||..++...        ....
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   80 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQE   80 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECC--eEEEEEECCCcccchhHHHHHHHHHHHHH
Confidence            3479999999999999999999987643 22234445556667777777  45889999997543211        1134


Q ss_pred             ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCC
Q 028792           78 YRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATN  157 (203)
Q Consensus        78 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  157 (203)
                      +..+|++++|+|++++.++. ...|+..+......+.|+++|+||+|+.+...       .++...+.+++++||++|.|
T Consensus        81 ~~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-------~~~~~~~~~~~~~SA~~g~g  152 (172)
T 2gj8_A           81 IEQADRVLFMVDGTTTDAVD-PAEIWPEFIARLPAKLPITVVRNKADITGETL-------GMSEVNGHALIRLSARTGEG  152 (172)
T ss_dssp             HHTCSEEEEEEETTTCCCCS-HHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-------EEEEETTEEEEECCTTTCTT
T ss_pred             HHhCCEEEEEEECCCCCCHH-HHHHHHHHHHhcccCCCEEEEEECccCCcchh-------hhhhccCCceEEEeCCCCCC
Confidence            78999999999999888765 34666666665555789999999999854211       11122457899999999999


Q ss_pred             HHHHHHHHHHHHH
Q 028792          158 VEQAFMAMAASIK  170 (203)
Q Consensus       158 i~~~~~~l~~~~~  170 (203)
                      ++++|.+|.+.+.
T Consensus       153 v~~l~~~l~~~~~  165 (172)
T 2gj8_A          153 VDVLRNHLKQSMG  165 (172)
T ss_dssp             HHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999988663

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.94  E-value=2.9e-25  Score=171.02  Aligned_cols=163  Identities=15%  Similarity=0.076  Sum_probs=125.6

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCC-CccccceeeEEEEEEEC-CeEEEEEEEeCCChhhhc----------
Q 028792            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLES-YISTIGVDFKIRTVEQD-GKTIKLQIWDTAGQERFR----------   71 (203)
Q Consensus         4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~----------   71 (203)
                      +.+..-.|+++|.+|||||||+|+|++..+... ..+.++.......+..+ +  ..+.+|||||.....          
T Consensus         6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~--~~i~lvDTPG~~~~~~~~~l~~~~~   83 (308)
T 3iev_A            6 HHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNE--AQIIFLDTPGIYEPKKSDVLGHSMV   83 (308)
T ss_dssp             -CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTT--EEEEEEECCCCCCCCTTCHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCC--CeEEEEECcCCCccccchhHHHHHH
Confidence            455678899999999999999999999877532 22333333333444444 4  789999999975433          


Q ss_pred             hhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC--CCEEE
Q 028792           72 TITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIG--IPFME  149 (203)
Q Consensus        72 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~  149 (203)
                      .....++..+|++++|+|++++.+......|+..+..   .+.|+++|+||+|+........+....+....+  .++++
T Consensus        84 ~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~---~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~  160 (308)
T 3iev_A           84 EIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP---LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVP  160 (308)
T ss_dssp             HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG---GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEE
T ss_pred             HHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh---cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEE
Confidence            4556678899999999999998887777666766655   368999999999997445555666777777775  78999


Q ss_pred             EecCCCCCHHHHHHHHHHHHHH
Q 028792          150 TSAKSATNVEQAFMAMAASIKN  171 (203)
Q Consensus       150 ~Sa~~~~gi~~~~~~l~~~~~~  171 (203)
                      +||++|.|++++|++|.+.+.+
T Consensus       161 vSA~~g~gv~~L~~~l~~~l~~  182 (308)
T 3iev_A          161 ISALKGANLDELVKTILKYLPE  182 (308)
T ss_dssp             CBTTTTBSHHHHHHHHHHHSCB
T ss_pred             EeCCCCCCHHHHHHHHHHhCcc
Confidence            9999999999999999987753

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.93  E-value=8.6e-27  Score=178.63  Aligned_cols=154  Identities=16%  Similarity=0.211  Sum_probs=115.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCC---CCccccceeeEEEEEEECCeEEEEEEEeCCChhhhch---hhhccccCCcE
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDSYLE---SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT---ITSSYYRGAHG   83 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---~~~~~~~~~d~   83 (203)
                      ||+++|..|||||||++++.++..+.   ...+|.+.++..  +  + ..+++++|||+|+++|..   .+..+++++++
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~--v--~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~   75 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH--F--S-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA   75 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE--E--C-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE--E--c-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence            68999999999999999888664433   245666655542  2  2 347899999999999864   35788999999


Q ss_pred             EEEEEeCCCh--hhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC-------cccCHHHHHHHHHH----cCCCEEEE
Q 028792           84 IIVVYDVTDQ--ESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN-------KVVSYETAKAFADE----IGIPFMET  150 (203)
Q Consensus        84 ~i~v~d~~~~--~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~-------~~~~~~~~~~~~~~----~~~~~~~~  150 (203)
                      +|+|||++++  +++..+..|+..+.... .+.|+++++||+|+...       +.+..++..++++.    +++.+++|
T Consensus        76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~~-~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eT  154 (331)
T 3r7w_B           76 LVYVIDSQDEYINAITNLAMIIEYAYKVN-PSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLT  154 (331)
T ss_dssp             EEEECCCSSCTTHHHHHHHHHHHHHHHHC-TTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECC
T ss_pred             EEEEEECCchHHHHHHHHHHHHHHHhhcC-CCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEe
Confidence            9999999997  33333344444444433 47999999999999764       24555566677765    57899999


Q ss_pred             ecCCCCCHHHHHHHHHHHHH
Q 028792          151 SAKSATNVEQAFMAMAASIK  170 (203)
Q Consensus       151 Sa~~~~gi~~~~~~l~~~~~  170 (203)
                      ||++ .++.++|..+.+.+.
T Consensus       155 SAkd-~nV~eAFs~iv~~li  173 (331)
T 3r7w_B          155 SIFD-HSIYEAFSRIVQKLI  173 (331)
T ss_dssp             CSSS-SHHHHHHHHHHTTSS
T ss_pred             ccCC-CcHHHHHHHHHHHHH
Confidence            9998 599999999987654

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.93  E-value=1.2e-26  Score=191.07  Aligned_cols=164  Identities=20%  Similarity=0.308  Sum_probs=124.1

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEE------E--EECCeEEEEEEEeCCChhhhchhhhc
Q 028792            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRT------V--EQDGKTIKLQIWDTAGQERFRTITSS   76 (203)
Q Consensus         5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~------~--~~~~~~~~~~i~D~~g~~~~~~~~~~   76 (203)
                      ....+||+++|.+|||||||+++|.+..+...+.++.+.++....      +  ..++..+.+.+||+||++.+......
T Consensus        38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~  117 (535)
T 3dpu_A           38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF  117 (535)
T ss_dssp             CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred             cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence            456799999999999999999999998887777777776665442      1  12233578999999999999998889


Q ss_pred             cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCC
Q 028792           77 YYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSAT  156 (203)
Q Consensus        77 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  156 (203)
                      ++..+|++++|+|+++.+   .+..|+..+..... +.|+++|+||+|+.....+..++..+++...+++++++||++|.
T Consensus       118 ~l~~~d~ii~V~D~s~~~---~~~~~~~~l~~~~~-~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~  193 (535)
T 3dpu_A          118 FMTRSSVYMLLLDSRTDS---NKHYWLRHIEKYGG-KSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGD  193 (535)
T ss_dssp             HHHSSEEEEEEECGGGGG---GHHHHHHHHHHHSS-SCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC----
T ss_pred             HccCCcEEEEEEeCCCch---hHHHHHHHHHHhCC-CCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCccc
Confidence            999999999999998654   45678777777654 68999999999998877788888888888889999999999999


Q ss_pred             CHHHHHHHHHHHHHHH
Q 028792          157 NVEQAFMAMAASIKNR  172 (203)
Q Consensus       157 gi~~~~~~l~~~~~~~  172 (203)
                      |++++|.+|.+.+.+.
T Consensus       194 gi~eL~~~l~~~~~~~  209 (535)
T 3dpu_A          194 GVESIAKSLKSAVLHP  209 (535)
T ss_dssp             -CTTHHHHHHHHHTCT
T ss_pred             CHHHHHHHHHHHHhcc
Confidence            9999999999987653

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.93  E-value=1.7e-26  Score=173.48  Aligned_cols=151  Identities=15%  Similarity=0.144  Sum_probs=116.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhch----------hhhccc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT----------ITSSYY   78 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----------~~~~~~   78 (203)
                      .+|+++|.+|+|||||+|+|.+........++.+.+.....+..++  ..+.+||+||...+..          ....++
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~   79 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGE--HLIEITDLPGVYSLVANAEGISQDEQIAAQSV   79 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETT--EEEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECC--eEEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence            4899999999999999999998876555566777677777777777  4789999999876543          345556


Q ss_pred             --cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCC
Q 028792           79 --RGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSAT  156 (203)
Q Consensus        79 --~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  156 (203)
                        ..+|++++|+|+++.++...+..+   +   ...+.|+++|+||+|+........ ....+.+.++++++++||++|.
T Consensus        80 ~~~~~d~vi~VvDas~~~~~~~l~~~---l---~~~~~pvilv~NK~Dl~~~~~~~~-~~~~l~~~lg~~vi~~SA~~g~  152 (256)
T 3iby_A           80 IDLEYDCIINVIDACHLERHLYLTSQ---L---FELGKPVVVALNMMDIAEHRGISI-DTEKLESLLGCSVIPIQAHKNI  152 (256)
T ss_dssp             HHSCCSEEEEEEEGGGHHHHHHHHHH---H---TTSCSCEEEEEECHHHHHHTTCEE-CHHHHHHHHCSCEEECBGGGTB
T ss_pred             hhCCCCEEEEEeeCCCchhHHHHHHH---H---HHcCCCEEEEEEChhcCCcCCcHH-HHHHHHHHcCCCEEEEECCCCC
Confidence              889999999999987654433332   2   233789999999999864332211 2445777789999999999999


Q ss_pred             CHHHHHHHHHHH
Q 028792          157 NVEQAFMAMAAS  168 (203)
Q Consensus       157 gi~~~~~~l~~~  168 (203)
                      |++++|++|.+.
T Consensus       153 gi~el~~~i~~~  164 (256)
T 3iby_A          153 GIPALQQSLLHC  164 (256)
T ss_dssp             SHHHHHHHHHTC
T ss_pred             CHHHHHHHHHhh
Confidence            999999999875

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.93  E-value=1.6e-25  Score=161.21  Aligned_cols=157  Identities=17%  Similarity=0.210  Sum_probs=111.3

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCC----------hhhhchh
Q 028792            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG----------QERFRTI   73 (203)
Q Consensus         4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~~   73 (203)
                      +.+..++|+++|++|+|||||+++|++.... ...++.+.+........+.   .+.+||+||          ...+...
T Consensus        19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~   94 (195)
T 3pqc_A           19 PPPLKGEVAFVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKRL   94 (195)
T ss_dssp             CCCTTCEEEEEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHcCccc-cccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHHH
Confidence            3456789999999999999999999987733 2233433333333333333   477999999          5566666


Q ss_pred             hhccccCC---cEEEEEEeCCChhhHH--HHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc--cCHHHHHHHHHHcC-C
Q 028792           74 TSSYYRGA---HGIIVVYDVTDQESFN--NVKQWLNEIDRYASENVNKLLVGNKCDLTANKV--VSYETAKAFADEIG-I  145 (203)
Q Consensus        74 ~~~~~~~~---d~~i~v~d~~~~~s~~--~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~-~  145 (203)
                      +..++..+   |++++|+|+++..+..  .+..|+.   ..   +.|+++|+||+|+.+...  ...++..+++...+ +
T Consensus        95 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~---~~---~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  168 (195)
T 3pqc_A           95 VEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMK---SL---NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEY  168 (195)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHH---HT---TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCS
T ss_pred             HHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHH---Hc---CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCC
Confidence            66666555   9999999998754322  2223332   22   689999999999875432  23344555666544 7


Q ss_pred             CEEEEecCCCCCHHHHHHHHHHHHH
Q 028792          146 PFMETSAKSATNVEQAFMAMAASIK  170 (203)
Q Consensus       146 ~~~~~Sa~~~~gi~~~~~~l~~~~~  170 (203)
                      +++++||++|.|++++|++|.+.+.
T Consensus       169 ~~~~~Sa~~~~gv~~l~~~l~~~l~  193 (195)
T 3pqc_A          169 TIIPTSSVTGEGISELLDLISTLLK  193 (195)
T ss_dssp             CEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred             ceEEEecCCCCCHHHHHHHHHHHhh
Confidence            9999999999999999999998774

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.93  E-value=3.7e-26  Score=172.83  Aligned_cols=153  Identities=19%  Similarity=0.218  Sum_probs=112.5

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhc------hhhhcccc-
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR------TITSSYYR-   79 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~~-   79 (203)
                      +.++|+++|++|+|||||+++|.+........+..+.+.  ....+.. ...+.+||+||...+.      .+...++. 
T Consensus         2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~--~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~   78 (272)
T 3b1v_A            2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVER--KSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS   78 (272)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSC--EEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEE--EEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence            468999999999999999999998764444334443333  3333343 4678999999987764      33444554 


Q ss_pred             -CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCH
Q 028792           80 -GAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNV  158 (203)
Q Consensus        80 -~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  158 (203)
                       .+|++++|+|+++.++.   ..|...+..   .+.|+++++||+|+.....+. .....++..++++++++||++|.|+
T Consensus        79 ~~~d~vi~V~D~t~~e~~---~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi  151 (272)
T 3b1v_A           79 QRADSILNVVDATNLERN---LYLTTQLIE---TGIPVTIALNMIDVLDGQGKK-INVDKLSYHLGVPVVATSALKQTGV  151 (272)
T ss_dssp             TCCSEEEEEEEGGGHHHH---HHHHHHHHH---TCSCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBTTTTBSH
T ss_pred             CCCCEEEEEecCCchHhH---HHHHHHHHh---cCCCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCCEEEEEccCCCCH
Confidence             69999999999886654   334444443   368999999999986433333 3456778888999999999999999


Q ss_pred             HHHHHHHHHHH
Q 028792          159 EQAFMAMAASI  169 (203)
Q Consensus       159 ~~~~~~l~~~~  169 (203)
                      +++|.+|.+.+
T Consensus       152 ~el~~~i~~~~  162 (272)
T 3b1v_A          152 DQVVKKAAHTT  162 (272)
T ss_dssp             HHHHHHHHHSC
T ss_pred             HHHHHHHHHHH
Confidence            99999998754

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.93  E-value=1.6e-25  Score=169.68  Aligned_cols=158  Identities=22%  Similarity=0.227  Sum_probs=120.9

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhch------hhhccc--
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT------ITSSYY--   78 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~--   78 (203)
                      +.++|+++|++|+|||||+++|.+........++.+.+.....+..++  ..+.+||+||...+..      ....++  
T Consensus         2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   79 (271)
T 3k53_A            2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYRE--KEFLVVDLPGIYSLTAHSIDELIARNFILD   79 (271)
T ss_dssp             CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETT--EEEEEEECCCCSCCCSSCHHHHHHHHHHHT
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECC--ceEEEEeCCCccccccCCHHHHHHHHhhhc
Confidence            468999999999999999999998877555566677677777777777  5689999999876654      344444  


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCH
Q 028792           79 RGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNV  158 (203)
Q Consensus        79 ~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  158 (203)
                      ..+|++++|+|+++.+.   ...+...+....  ..|+++++||+|+.+......+ ...+.+.++++++++||++|.|+
T Consensus        80 ~~~d~vi~v~D~~~~~~---~~~~~~~~~~~~--~~p~ilv~NK~Dl~~~~~~~~~-~~~l~~~lg~~~~~~Sa~~g~gi  153 (271)
T 3k53_A           80 GNADVIVDIVDSTCLMR---NLFLTLELFEME--VKNIILVLNKFDLLKKKGAKID-IKKMRKELGVPVIPTNAKKGEGV  153 (271)
T ss_dssp             TCCSEEEEEEEGGGHHH---HHHHHHHHHHTT--CCSEEEEEECHHHHHHHTCCCC-HHHHHHHHSSCEEECBGGGTBTH
T ss_pred             cCCcEEEEEecCCcchh---hHHHHHHHHhcC--CCCEEEEEEChhcCcccccHHH-HHHHHHHcCCcEEEEEeCCCCCH
Confidence            78999999999988542   233333333331  2899999999997643333322 66778888999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 028792          159 EQAFMAMAASIKNR  172 (203)
Q Consensus       159 ~~~~~~l~~~~~~~  172 (203)
                      +++|.++.+.+.+.
T Consensus       154 ~~l~~~i~~~~~~~  167 (271)
T 3k53_A          154 EELKRMIALMAEGK  167 (271)
T ss_dssp             HHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhcc
Confidence            99999999887543

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.93  E-value=5.9e-26  Score=172.23  Aligned_cols=155  Identities=16%  Similarity=0.198  Sum_probs=115.8

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhch----------hhhc
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT----------ITSS   76 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----------~~~~   76 (203)
                      +.++|+++|.+|+|||||+|+|.+........++++.+.....+...+  ..+.+||+||...+..          ....
T Consensus         2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~   79 (274)
T 3i8s_A            2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACH   79 (274)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHH
Confidence            358999999999999999999998876555556666666666666666  4678999999876552          1222


Q ss_pred             c--ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCC
Q 028792           77 Y--YRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKS  154 (203)
Q Consensus        77 ~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  154 (203)
                      +  ...+|++++|+|+++.+....+..+   +...   +.|+++|+||+|+.+..... .....+.+.++++++++||++
T Consensus        80 ~~~~~~~d~ii~VvD~~~~~~~~~~~~~---l~~~---~~p~ivv~NK~Dl~~~~~~~-~~~~~l~~~lg~~~i~~SA~~  152 (274)
T 3i8s_A           80 YILSGDADLLINVVDASNLERNLYLTLQ---LLEL---GIPCIVALNMLDIAEKQNIR-IEIDALSARLGCPVIPLVSTR  152 (274)
T ss_dssp             HHHHTCCSEEEEEEEGGGHHHHHHHHHH---HHHH---TCCEEEEEECHHHHHHTTEE-ECHHHHHHHHTSCEEECCCGG
T ss_pred             HHhhcCCCEEEEEecCCChHHHHHHHHH---HHhc---CCCEEEEEECccchhhhhHH-HHHHHHHHhcCCCEEEEEcCC
Confidence            2  2789999999999986654443333   3332   68999999999986433221 124567778899999999999


Q ss_pred             CCCHHHHHHHHHHHHH
Q 028792          155 ATNVEQAFMAMAASIK  170 (203)
Q Consensus       155 ~~gi~~~~~~l~~~~~  170 (203)
                      |.|++++|.+|.+.+.
T Consensus       153 g~gi~el~~~i~~~~~  168 (274)
T 3i8s_A          153 GRGIEALKLAIDRYKA  168 (274)
T ss_dssp             GHHHHHHHHHHHTCCC
T ss_pred             CCCHHHHHHHHHHHHh
Confidence            9999999999876553

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.92  E-value=4.3e-25  Score=162.51  Aligned_cols=164  Identities=15%  Similarity=0.128  Sum_probs=107.8

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEEC-CeEEEEEEEeCCCh----------hhhchh
Q 028792            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQD-GKTIKLQIWDTAGQ----------ERFRTI   73 (203)
Q Consensus         5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~----------~~~~~~   73 (203)
                      ....++|+|+|.+|+|||||+++|++.........+.+.+......... .....+.+|||||.          +.+...
T Consensus        26 ~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~  105 (223)
T 4dhe_A           26 PTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQL  105 (223)
T ss_dssp             CCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHH
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHH
Confidence            3467899999999999999999999876322222222222222233333 22367889999993          344445


Q ss_pred             hhccccC---CcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccC--HHHHHHHHHH------
Q 028792           74 TSSYYRG---AHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVS--YETAKAFADE------  142 (203)
Q Consensus        74 ~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~------  142 (203)
                      ...++..   +|++++|+|+++..+. ....++..+..   .+.|+++|+||+|+.......  .+.+.+....      
T Consensus       106 ~~~~~~~~~~~d~vi~v~d~~~~~~~-~~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~  181 (223)
T 4dhe_A          106 LSSYLQTRPQLCGMILMMDARRPLTE-LDRRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGY  181 (223)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHhcCcCcCEEEEEEeCCCCCCH-HHHHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhccc
Confidence            5555544   8899999999875432 12334444433   368999999999987643321  1222233333      


Q ss_pred             -cCCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 028792          143 -IGIPFMETSAKSATNVEQAFMAMAASIKNR  172 (203)
Q Consensus       143 -~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~  172 (203)
                       .+++++++||++|.|++++|++|.+.+...
T Consensus       182 ~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~  212 (223)
T 4dhe_A          182 AGKLTVQLFSALKRTGLDDAHALIESWLRPA  212 (223)
T ss_dssp             CSCEEEEEEBTTTTBSHHHHHHHHHHHHC--
T ss_pred             CCCCeEEEeecCCCcCHHHHHHHHHHhcCcc
Confidence             457899999999999999999999887543

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.92  E-value=9.6e-24  Score=165.76  Aligned_cols=162  Identities=17%  Similarity=0.191  Sum_probs=121.5

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhc---------hhhhc
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR---------TITSS   76 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~---------~~~~~   76 (203)
                      ...++|+++|.+|+|||||+++|.+........+..+.......+..++  ..+.+|||||.....         .....
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~  242 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY--FRYQIIDTPGLLDRPISERNEIEKQAILA  242 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT--EEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC--ceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence            4678999999999999999999998764333223333334444444444  678999999974321         11223


Q ss_pred             cccCCcEEEEEEeCCChh--hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCC
Q 028792           77 YYRGAHGIIVVYDVTDQE--SFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKS  154 (203)
Q Consensus        77 ~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  154 (203)
                      +...+|++++|+|++++.  ++.....|+..+..... +.|+++|+||+|+.....+  ++..+++...+++++++||++
T Consensus       243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~iSA~~  319 (357)
T 2e87_A          243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVADEENI--KRLEKFVKEKGLNPIKISALK  319 (357)
T ss_dssp             GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTCCHHHH--HHHHHHHHHTTCCCEECBTTT
T ss_pred             HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccCChHHH--HHHHHHHHhcCCCeEEEeCCC
Confidence            445799999999999877  67777788887766544 6899999999998754332  445666677789999999999


Q ss_pred             CCCHHHHHHHHHHHHHHH
Q 028792          155 ATNVEQAFMAMAASIKNR  172 (203)
Q Consensus       155 ~~gi~~~~~~l~~~~~~~  172 (203)
                      |+|++++|++|.+.+...
T Consensus       320 g~gi~~l~~~i~~~l~~~  337 (357)
T 2e87_A          320 GTGIDLVKEEIIKTLRPL  337 (357)
T ss_dssp             TBTHHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHHH
Confidence            999999999999988654

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.92  E-value=1.3e-24  Score=174.95  Aligned_cols=165  Identities=18%  Similarity=0.179  Sum_probs=117.2

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCC-CCCccccceeeEEEEEEECCeEEEEEEEeCCCh----------hhhchhh
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYL-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ----------ERFRTIT   74 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~----------~~~~~~~   74 (203)
                      +..++|+++|.+|+|||||+|+|++.... ....++++.+.....+..++  ..+.+|||||+          +.+....
T Consensus       173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~e~~~~~~  250 (436)
T 2hjg_A          173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQ--QEFVIVDTAGMRKKGKVYETTEKYSVLR  250 (436)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETT--EEEEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred             ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECC--eEEEEEECCCcCcCccccchHHHHHHHH
Confidence            45699999999999999999999987653 33345555555556667777  45889999997          3333333


Q ss_pred             h-ccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHH-HHHH----cCCCEE
Q 028792           75 S-SYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKA-FADE----IGIPFM  148 (203)
Q Consensus        75 ~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~-~~~~----~~~~~~  148 (203)
                      . ..+..+|++++|+|++++.++... .|...+..   .+.|+++|+||+|+.+......++..+ +...    .+++++
T Consensus       251 ~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~  326 (436)
T 2hjg_A          251 ALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPIL  326 (436)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEE
T ss_pred             HHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH---cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEE
Confidence            2 467889999999999998776654 35544433   368999999999998655443333322 2222    357999


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHHHhccC
Q 028792          149 ETSAKSATNVEQAFMAMAASIKNRMASQ  176 (203)
Q Consensus       149 ~~Sa~~~~gi~~~~~~l~~~~~~~~~~~  176 (203)
                      ++||++|.|++++|..+.+.+.++..+.
T Consensus       327 ~~SA~tg~~v~~l~~~i~~~~~~~~~~~  354 (436)
T 2hjg_A          327 FMSALTKKRIHTLMPAIIKASENHSLRV  354 (436)
T ss_dssp             ECCTTTCTTGGGHHHHHHHHHHHHTCCC
T ss_pred             EEecccCCCHHHHHHHHHHHHHHhhcCC
Confidence            9999999999999999999888765443

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.92  E-value=2.4e-24  Score=174.16  Aligned_cols=156  Identities=20%  Similarity=0.163  Sum_probs=100.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCC-CCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhh--------hccc
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFADDSYL-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTIT--------SSYY   78 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~--------~~~~   78 (203)
                      .++|+++|.+|+|||||+|+|.+.... ....++++.+.....+..++  ..+.+|||||...+...+        ..++
T Consensus       233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~~  310 (476)
T 3gee_A          233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMKM  310 (476)
T ss_dssp             CEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhhc
Confidence            478999999999999999999987532 33345555666667777777  678999999987655433        3367


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCH
Q 028792           79 RGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNV  158 (203)
Q Consensus        79 ~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  158 (203)
                      ..+|++++|+|++++.++..+..+...+....  +.|+++|+||+|+.......   ..++......+++++||++|+|+
T Consensus       311 ~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~~~~~---~~~l~~~~~~~~i~vSAktg~GI  385 (476)
T 3gee_A          311 AEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAANADAL---IRAIADGTGTEVIGISALNGDGI  385 (476)
T ss_dssp             SSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTTTHHH---HHHHHHHHTSCEEECBTTTTBSH
T ss_pred             ccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCccchh---HHHHHhcCCCceEEEEECCCCCH
Confidence            89999999999999877654333333333332  68999999999997654432   23344332478999999999999


Q ss_pred             HHHHHHHHHHHH
Q 028792          159 EQAFMAMAASIK  170 (203)
Q Consensus       159 ~~~~~~l~~~~~  170 (203)
                      +++|++|.+.+.
T Consensus       386 ~eL~~~i~~~~~  397 (476)
T 3gee_A          386 DTLKQHMGDLVK  397 (476)
T ss_dssp             HHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999999876

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.92  E-value=1.8e-25  Score=164.11  Aligned_cols=145  Identities=19%  Similarity=0.293  Sum_probs=105.8

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCC---CccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccC
Q 028792            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLES---YISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRG   80 (203)
Q Consensus         4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~   80 (203)
                      ...+.++|+++|++|+|||||+++|.+..+...   +.++.+..+         ....+.+||+||++.+...+..++..
T Consensus         8 ~~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~   78 (218)
T 1nrj_B            8 QKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKT   78 (218)
T ss_dssp             --CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHHHHHH
T ss_pred             ccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHHHHHh
Confidence            355779999999999999999999998776542   333333222         23568899999999988888888776


Q ss_pred             ----CcEEEEEEeCC-ChhhHHHHHHHHHHHHhh----cCCCCcEEEEEeCCCCCCCcccC------HHHHHHHHHHcCC
Q 028792           81 ----AHGIIVVYDVT-DQESFNNVKQWLNEIDRY----ASENVNKLLVGNKCDLTANKVVS------YETAKAFADEIGI  145 (203)
Q Consensus        81 ----~d~~i~v~d~~-~~~s~~~~~~~~~~l~~~----~~~~~p~iiv~nK~D~~~~~~~~------~~~~~~~~~~~~~  145 (203)
                          +|++++|+|++ +++++..+..|+..+...    ...+.|+++|+||+|+.......      .+++..++...++
T Consensus        79 ~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~  158 (218)
T 1nrj_B           79 RAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKK  158 (218)
T ss_dssp             HGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhc
Confidence                89999999999 888988888888777554    33579999999999998765433      3456667777778


Q ss_pred             CEEEEecCCCCC
Q 028792          146 PFMETSAKSATN  157 (203)
Q Consensus       146 ~~~~~Sa~~~~g  157 (203)
                      .++++||++|.+
T Consensus       159 ~~~~~Sa~~~~~  170 (218)
T 1nrj_B          159 SLNEVERKINEE  170 (218)
T ss_dssp             HHHC--------
T ss_pred             cccccccccccc
Confidence            899999998764

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.91  E-value=3.6e-24  Score=173.22  Aligned_cols=167  Identities=17%  Similarity=0.176  Sum_probs=122.3

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhcCCC-CCCCccccceeeEEEEEEECCeEEEEEEEeCCC----------hhhhchh
Q 028792            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSY-LESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG----------QERFRTI   73 (203)
Q Consensus         5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~~   73 (203)
                      .+..++|+++|.+|+|||||+++|.+... .....++++.+.....+..++  ..+.+|||||          ++.+...
T Consensus       192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~e~~~~~  269 (456)
T 4dcu_A          192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQ--QEFVIVDTAGMRKKGKVYETTEKYSVL  269 (456)
T ss_dssp             CTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETT--EEEEETTGGGTTTBTTBCCCCSHHHHH
T ss_pred             ccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECC--ceEEEEECCCCCcCcccchHHHHHHHH
Confidence            34579999999999999999999997653 233344555555556666777  4789999999          4555554


Q ss_pred             hh-ccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHc-----CCCE
Q 028792           74 TS-SYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEI-----GIPF  147 (203)
Q Consensus        74 ~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~  147 (203)
                      .. .++..+|++++|+|+++..+ .....|...+..   .+.|+++|+||+|+.+.+....++..+.+...     ++++
T Consensus       270 ~~~~~~~~ad~~llviD~~~~~~-~~~~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (456)
T 4dcu_A          270 RALKAIDRSEVVAVVLDGEEGII-EQDKRIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPI  345 (456)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCCC-HHHHHHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCE
T ss_pred             HHHHHHhhCCEEEEEEeCCCCcC-HHHHHHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCE
Confidence            43 36789999999999987543 222334444433   36899999999999876666666666666554     5899


Q ss_pred             EEEecCCCCCHHHHHHHHHHHHHHHhccCC
Q 028792          148 METSAKSATNVEQAFMAMAASIKNRMASQP  177 (203)
Q Consensus       148 ~~~Sa~~~~gi~~~~~~l~~~~~~~~~~~~  177 (203)
                      +++||++|.|++++|.++.+.+.++..+.+
T Consensus       346 ~~~SA~~g~gv~~l~~~i~~~~~~~~~~~~  375 (456)
T 4dcu_A          346 LFMSALTKKRIHTLMPAIIKASENHSLRVQ  375 (456)
T ss_dssp             EECCTTTCTTGGGHHHHHHHHHHHHTCCCC
T ss_pred             EEEcCCCCcCHHHHHHHHHHHHHHhcccCC
Confidence            999999999999999999998887765544

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.91  E-value=1.1e-23  Score=161.63  Aligned_cols=156  Identities=17%  Similarity=0.124  Sum_probs=108.9

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCC-CccccceeeEEEEEEECCeEEEEEEEeCCChhh--------hchhhhc
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLES-YISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER--------FRTITSS   76 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~   76 (203)
                      -+..+|+++|.+|+|||||+|+|++..+... ..+.++.......+..++  .++.+|||||...        +......
T Consensus         5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~--~~l~l~DTpG~~~~~~~l~~~~~~~~~~   82 (301)
T 1wf3_A            5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFMDQEVYE   82 (301)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHHHHHHHH
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCC--cEEEEecCccccchhhHHHHHHHHHHHH
Confidence            4567899999999999999999998877532 223333232223333444  7899999999765        3445566


Q ss_pred             cccCCcEEEEEEeCCChhhHHHHHHHH-HHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHc-C-CCEEEEecC
Q 028792           77 YYRGAHGIIVVYDVTDQESFNNVKQWL-NEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEI-G-IPFMETSAK  153 (203)
Q Consensus        77 ~~~~~d~~i~v~d~~~~~s~~~~~~~~-~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~-~-~~~~~~Sa~  153 (203)
                      .+..+|++++|+|++++.+..  ..|+ ..+.... .+.|+++|+||+|+......    +.+....+ + .+++++||+
T Consensus        83 ~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~-~~~p~ilV~NK~Dl~~~~~~----~~~~~~~~~~~~~~~~iSA~  155 (301)
T 1wf3_A           83 ALADVNAVVWVVDLRHPPTPE--DELVARALKPLV-GKVPILLVGNKLDAAKYPEE----AMKAYHELLPEAEPRMLSAL  155 (301)
T ss_dssp             HTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGT-TTSCEEEEEECGGGCSSHHH----HHHHHHHTSTTSEEEECCTT
T ss_pred             HHhcCCEEEEEEECCCCCChH--HHHHHHHHHhhc-CCCCEEEEEECcccCCchHH----HHHHHHHhcCcCcEEEEeCC
Confidence            789999999999998765433  2333 3444332 36899999999998754330    22222322 3 579999999


Q ss_pred             CCCCHHHHHHHHHHHHH
Q 028792          154 SATNVEQAFMAMAASIK  170 (203)
Q Consensus       154 ~~~gi~~~~~~l~~~~~  170 (203)
                      +|.|+++++++|.+.+.
T Consensus       156 ~g~gv~~l~~~l~~~l~  172 (301)
T 1wf3_A          156 DERQVAELKADLLALMP  172 (301)
T ss_dssp             CHHHHHHHHHHHHTTCC
T ss_pred             CCCCHHHHHHHHHHhcc
Confidence            99999999999987653

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.91  E-value=1.2e-23  Score=169.48  Aligned_cols=178  Identities=20%  Similarity=0.265  Sum_probs=116.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCC-CCCccccceeeEEEEEEECCeEEEEEEEeCCChhh---------hchhhhccc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDSYL-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER---------FRTITSSYY   78 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~~~~   78 (203)
                      .+|+++|.||||||||+|+|++.... ....++++.+.....+.+++  ..+.+|||||...         +...+..++
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~   79 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYG--KTFKLVDTCGVFDNPQDIISQKMKEVTLNMI   79 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETT--EEEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECC--eEEEEEECCCccccccchHHHHHHHHHHHHH
Confidence            47999999999999999999987653 23345566666677777777  4678999999653         334456678


Q ss_pred             cCCcEEEEEEeCCChhhHHH--HHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHH-HHHHHHcCC-CEEEEecCC
Q 028792           79 RGAHGIIVVYDVTDQESFNN--VKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETA-KAFADEIGI-PFMETSAKS  154 (203)
Q Consensus        79 ~~~d~~i~v~d~~~~~s~~~--~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~-~~~~~~~~~-~~~~~Sa~~  154 (203)
                      ..+|++++|+|+.+..+..+  +..|   +..   .++|+++|+||+|+...  . ..+. .++. .++. +++++||++
T Consensus        80 ~~ad~il~V~D~~~~~~~~d~~i~~~---l~~---~~~p~ilv~NK~D~~~~--~-~~~~~~~~~-~lg~~~~~~iSA~~  149 (439)
T 1mky_A           80 READLVLFVVDGKRGITKEDESLADF---LRK---STVDTILVANKAENLRE--F-EREVKPELY-SLGFGEPIPVSAEH  149 (439)
T ss_dssp             TTCSEEEEEEETTTCCCHHHHHHHHH---HHH---HTCCEEEEEESCCSHHH--H-HHHTHHHHG-GGSSCSCEECBTTT
T ss_pred             HhCCEEEEEEECCCCCCHHHHHHHHH---HHH---cCCCEEEEEeCCCCccc--c-HHHHHHHHH-hcCCCCEEEEeccC
Confidence            99999999999987554332  2222   222   26899999999997431  1 1222 3443 4566 799999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhcc-CCCCCCCCCCccccCCCCCCCCC
Q 028792          155 ATNVEQAFMAMAASIKNRMAS-QPASNNARPPTVQIRGQPVNQKS  198 (203)
Q Consensus       155 ~~gi~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  198 (203)
                      |.|+++++++|.+.+.+.... ..........+....+.++.+||
T Consensus       150 g~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKS  194 (439)
T 1mky_A          150 NINLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKS  194 (439)
T ss_dssp             TBSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHH
T ss_pred             CCCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHH
Confidence            999999999999988754211 01001233455666666666554

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.90  E-value=2.9e-24  Score=167.07  Aligned_cols=158  Identities=19%  Similarity=0.263  Sum_probs=117.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhh----hchhhhccc---cCC
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER----FRTITSSYY---RGA   81 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~~~---~~~   81 (203)
                      .+|+|+|.+|||||||+++|++........+..+.......+.+++. ..+.+||+||...    +..+...++   ..+
T Consensus       159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~-~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~  237 (342)
T 1lnz_A          159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHIERT  237 (342)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred             CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCC-ceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence            36889999999999999999976543222232333333444555432 4689999999643    233334444   459


Q ss_pred             cEEEEEEeCCC---hhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC--CCEEEEecCC
Q 028792           82 HGIIVVYDVTD---QESFNNVKQWLNEIDRYAS--ENVNKLLVGNKCDLTANKVVSYETAKAFADEIG--IPFMETSAKS  154 (203)
Q Consensus        82 d~~i~v~d~~~---~~s~~~~~~~~~~l~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~  154 (203)
                      |++++|+|+++   ++++..+..|+..+..+..  .+.|+++|+||+|+....    +...++.+.+.  .+++++||++
T Consensus       238 d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~----e~~~~l~~~l~~~~~v~~iSA~t  313 (342)
T 1lnz_A          238 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA----ENLEAFKEKLTDDYPVFPISAVT  313 (342)
T ss_dssp             CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH----HHHHHHHHHCCSCCCBCCCSSCC
T ss_pred             cEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCH----HHHHHHHHHhhcCCCEEEEECCC
Confidence            99999999998   7888889899998887653  478999999999986432    34556666666  6899999999


Q ss_pred             CCCHHHHHHHHHHHHHH
Q 028792          155 ATNVEQAFMAMAASIKN  171 (203)
Q Consensus       155 ~~gi~~~~~~l~~~~~~  171 (203)
                      ++|+++++.+|.+.+.+
T Consensus       314 g~gi~eL~~~l~~~l~~  330 (342)
T 1lnz_A          314 REGLRELLFEVANQLEN  330 (342)
T ss_dssp             SSTTHHHHHHHHHHHTS
T ss_pred             CcCHHHHHHHHHHHHhh
Confidence            99999999999998854

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.90  E-value=2.1e-23  Score=168.81  Aligned_cols=152  Identities=23%  Similarity=0.259  Sum_probs=115.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCC-CCCccccceeeEEEEEEECCeEEEEEEEeCCChh-hhch--------hhhccc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDSYL-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE-RFRT--------ITSSYY   78 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~-~~~~--------~~~~~~   78 (203)
                      ++|+++|.||+|||||+|+|.+.... ....++++.++....+.+++  ..+.+|||||.. .+..        ....++
T Consensus       244 ~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~  321 (482)
T 1xzp_A          244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQEI  321 (482)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred             CEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHHh
Confidence            89999999999999999999987542 33345556666677777777  678999999987 5432        223567


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCH
Q 028792           79 RGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNV  158 (203)
Q Consensus        79 ~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  158 (203)
                      ..+|++++|+|++++.++.... +++.+     .+.|+++|+||+|+.+.  ...+++.++.. .+++++++||++|+|+
T Consensus       322 ~~aD~vl~VvD~s~~~s~~~~~-il~~l-----~~~piivV~NK~DL~~~--~~~~~~~~~~~-~~~~~i~iSAktg~Gi  392 (482)
T 1xzp_A          322 EKADIVLFVLDASSPLDEEDRK-ILERI-----KNKRYLVVINKVDVVEK--INEEEIKNKLG-TDRHMVKISALKGEGL  392 (482)
T ss_dssp             HHCSEEEEEEETTSCCCHHHHH-HHHHH-----TTSSEEEEEEECSSCCC--CCHHHHHHHHT-CSTTEEEEEGGGTCCH
T ss_pred             hcccEEEEEecCCCCCCHHHHH-HHHHh-----cCCCEEEEEECcccccc--cCHHHHHHHhc-CCCcEEEEECCCCCCH
Confidence            8999999999999887765432 22222     26899999999999653  34445544432 4478999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 028792          159 EQAFMAMAASIKN  171 (203)
Q Consensus       159 ~~~~~~l~~~~~~  171 (203)
                      ++++++|.+.+..
T Consensus       393 ~eL~~~l~~~~~~  405 (482)
T 1xzp_A          393 EKLEESIYRETQE  405 (482)
T ss_dssp             HHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999997664

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.90  E-value=2.6e-24  Score=171.35  Aligned_cols=160  Identities=15%  Similarity=0.151  Sum_probs=115.5

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhcCCCC-CCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchh-------hh
Q 028792            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYL-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI-------TS   75 (203)
Q Consensus         4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-------~~   75 (203)
                      +....++|+|+|..|+|||||+++|++..+. ....+.++.+.....+...+. ..+.+|||||+..+...       ..
T Consensus        30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~~  108 (423)
T 3qq5_A           30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKAR  108 (423)
T ss_dssp             --CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHHH
Confidence            4567799999999999999999999987763 233344555566666666553 27899999998776544       34


Q ss_pred             ccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCC
Q 028792           76 SYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSA  155 (203)
Q Consensus        76 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  155 (203)
                      .++..+|++++|+|+...+   ....|+..+...   +.|+++|+||+|+......  +...++.+.++++++++||++|
T Consensus       109 ~~l~~aD~vllVvD~~~~~---~~~~~l~~l~~~---~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~vSAktg  180 (423)
T 3qq5_A          109 RVFYRADCGILVTDSAPTP---YEDDVVNLFKEM---EIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLVSALQK  180 (423)
T ss_dssp             HHHTSCSEEEEECSSSCCH---HHHHHHHHHHHT---TCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCCSSCCT
T ss_pred             HHHhcCCEEEEEEeCCChH---HHHHHHHHHHhc---CCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEEECCCC
Confidence            4778999999999994332   234565555544   6899999999999866544  5566666777899999999999


Q ss_pred             CCHHHHHHHHHHHHHHH
Q 028792          156 TNVEQAFMAMAASIKNR  172 (203)
Q Consensus       156 ~gi~~~~~~l~~~~~~~  172 (203)
                      .|++++|++|.+.+.+.
T Consensus       181 ~gI~eL~~~L~~~l~~~  197 (423)
T 3qq5_A          181 KGFDDIGKTISEILPGD  197 (423)
T ss_dssp             TSTTTHHHHHHHHSCCC
T ss_pred             CCHHHHHHHHHHhhhhh
Confidence            99999999999988544

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.89  E-value=4.6e-22  Score=148.02  Aligned_cols=164  Identities=15%  Similarity=0.182  Sum_probs=109.1

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcc--ccceeeEEEEEEECCeEEEEEEEeCCCh-----------hhhc
Q 028792            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYIS--TIGVDFKIRTVEQDGKTIKLQIWDTAGQ-----------ERFR   71 (203)
Q Consensus         5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~D~~g~-----------~~~~   71 (203)
                      .+..++|+|+|.+|+|||||+++|++........+  +.+.......+.+++  ..+.+|||||.           ..+.
T Consensus        26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~  103 (239)
T 3lxx_A           26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKEII  103 (239)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHHHH
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHHHH
Confidence            45679999999999999999999998877655444  445555556666666  57899999993           2344


Q ss_pred             hhhhccccCCcEEEEEEeCCChhh--HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccC------HHHHHHHHHHc
Q 028792           72 TITSSYYRGAHGIIVVYDVTDQES--FNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVS------YETAKAFADEI  143 (203)
Q Consensus        72 ~~~~~~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~------~~~~~~~~~~~  143 (203)
                      ..+...+..+|++++|+|+++...  ...+..+...+...  ...|+++|+||+|+.....+.      .+.+..+.+..
T Consensus       104 ~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~--~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~  181 (239)
T 3lxx_A          104 RCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGER--ARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIF  181 (239)
T ss_dssp             HHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHH--HGGGEEEEEECGGGC------------CHHHHHHHHHH
T ss_pred             HHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhh--ccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHc
Confidence            444555678899999999875433  12222222222111  135999999999987654332      23577788888


Q ss_pred             CCCEEEEecCCC-----CCHHHHHHHHHHHHHHH
Q 028792          144 GIPFMETSAKSA-----TNVEQAFMAMAASIKNR  172 (203)
Q Consensus       144 ~~~~~~~Sa~~~-----~gi~~~~~~l~~~~~~~  172 (203)
                      +..++.++...+     .++.++|..+...+.+.
T Consensus       182 ~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~  215 (239)
T 3lxx_A          182 GDRYCALNNKATGAEQEAQRAQLLGLIQRVVREN  215 (239)
T ss_dssp             SSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCEEEEEECCCCccccHHHHHHHHHHHHHHHHHc
Confidence            888888887754     68889998888777553

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.88  E-value=2.6e-22  Score=162.93  Aligned_cols=156  Identities=15%  Similarity=0.167  Sum_probs=111.6

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCC-------CCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccc
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDS-------YLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYY   78 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~   78 (203)
                      ...++|+++|..++|||||+++|.+..       ...+..+.++.+.....+..++  ..+.+||+||++.+.......+
T Consensus        17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~~~   94 (482)
T 1wb1_A           17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAA   94 (482)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHHHH
Confidence            456999999999999999999999766       2233333344444444455565  6899999999999988888889


Q ss_pred             cCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc--CHHHHHHHHHHc----CCCEEE
Q 028792           79 RGAHGIIVVYDVTD---QESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVV--SYETAKAFADEI----GIPFME  149 (203)
Q Consensus        79 ~~~d~~i~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~--~~~~~~~~~~~~----~~~~~~  149 (203)
                      ..+|++++|+|+++   +++.+.+.    .+..   .+.|+++++||+|+.+....  ..+++.+++...    ++++++
T Consensus        95 ~~aD~~ilVvda~~g~~~qt~e~l~----~~~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~  167 (482)
T 1wb1_A           95 DIIDLALIVVDAKEGPKTQTGEHML----ILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIP  167 (482)
T ss_dssp             TSCCEEEEEEETTTCSCHHHHHHHH----HHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEE
T ss_pred             hhCCEEEEEEecCCCccHHHHHHHH----HHHH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEE
Confidence            99999999999987   44433222    2222   25788999999999753211  233455555555    578999


Q ss_pred             EecCCCCCHHHHHHHHHHHHH
Q 028792          150 TSAKSATNVEQAFMAMAASIK  170 (203)
Q Consensus       150 ~Sa~~~~gi~~~~~~l~~~~~  170 (203)
                      +||++|+|+++++++|.+.+.
T Consensus       168 vSA~~g~gI~~L~~~L~~~i~  188 (482)
T 1wb1_A          168 ISAKTGFGVDELKNLIITTLN  188 (482)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHH
T ss_pred             EECcCCCCHHHHHHHHHHhhc
Confidence            999999999999999998775

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.88  E-value=5.7e-23  Score=165.58  Aligned_cols=152  Identities=18%  Similarity=0.219  Sum_probs=103.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCC-CCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhh--------hccc
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFADDSYL-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTIT--------SSYY   78 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~--------~~~~   78 (203)
                      .++|+++|++|+|||||+|+|.+.... ....++++.++....+.+++  ..+.+|||||...+...+        ...+
T Consensus       224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~~  301 (462)
T 3geh_A          224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQAA  301 (462)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CCC
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhhh
Confidence            478999999999999999999976543 23334555555555666777  668999999976544332        2357


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCH
Q 028792           79 RGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNV  158 (203)
Q Consensus        79 ~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  158 (203)
                      ..+|++++|+|++++.+... ..++..+.     ..|+++|+||+|+.......  ....+.  ...+++++||++|.|+
T Consensus       302 ~~aD~vl~VvD~s~~~~~~~-~~i~~~l~-----~~piivV~NK~Dl~~~~~~~--~~~~~~--~~~~~i~iSAktg~Gi  371 (462)
T 3geh_A          302 NTADLVLLTIDAATGWTTGD-QEIYEQVK-----HRPLILVMNKIDLVEKQLIT--SLEYPE--NITQIVHTAAAQKQGI  371 (462)
T ss_dssp             CSCSEEEEEEETTTCSCHHH-HHHHHHHT-----TSCEEEEEECTTSSCGGGST--TCCCCT--TCCCEEEEBTTTTBSH
T ss_pred             hcCCEEEEEeccCCCCCHHH-HHHHHhcc-----CCcEEEEEECCCCCcchhhH--HHHHhc--cCCcEEEEECCCCCCH
Confidence            88999999999998766443 33443332     36999999999997654432  111111  3568999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 028792          159 EQAFMAMAASIKN  171 (203)
Q Consensus       159 ~~~~~~l~~~~~~  171 (203)
                      ++++++|.+.+..
T Consensus       372 ~eL~~~i~~~~~~  384 (462)
T 3geh_A          372 DSLETAILEIVQT  384 (462)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999998754

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.88  E-value=1.7e-21  Score=152.88  Aligned_cols=159  Identities=17%  Similarity=0.135  Sum_probs=109.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhh---------hchhhhccccC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER---------FRTITSSYYRG   80 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~~~~~~   80 (203)
                      .|+++|++|+|||||+|+|.+........+..+.+.....+.+++  ..+.+|||+|...         +...+ ..+..
T Consensus       181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl-~~~~~  257 (364)
T 2qtf_A          181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTL-SEAKY  257 (364)
T ss_dssp             EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHH-HGGGG
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHH-HHHHh
Confidence            499999999999999999998776443344445556667777877  5678999999621         22222 24688


Q ss_pred             CcEEEEEEeCCChh--hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc-CHHHHHHHHHHc---CCCEEEEecCC
Q 028792           81 AHGIIVVYDVTDQE--SFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVV-SYETAKAFADEI---GIPFMETSAKS  154 (203)
Q Consensus        81 ~d~~i~v~d~~~~~--s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~-~~~~~~~~~~~~---~~~~~~~Sa~~  154 (203)
                      +|++++|+|++++.  ....+..+...+......+.|+++|+||+|+.+.... ..+.+..++...   +.+++++||++
T Consensus       258 aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~  337 (364)
T 2qtf_A          258 SDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALK  337 (364)
T ss_dssp             SSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTTT
T ss_pred             CCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECCC
Confidence            99999999999876  4555555666665554457899999999998754311 012232333444   24689999999


Q ss_pred             CCCHHHHHHHHHHHHHH
Q 028792          155 ATNVEQAFMAMAASIKN  171 (203)
Q Consensus       155 ~~gi~~~~~~l~~~~~~  171 (203)
                      +.|+++++++|.+.+..
T Consensus       338 g~gi~~L~~~I~~~l~~  354 (364)
T 2qtf_A          338 RTNLELLRDKIYQLATQ  354 (364)
T ss_dssp             TBSHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHhcc
Confidence            99999999999987764

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.88  E-value=3.9e-22  Score=150.14  Aligned_cols=163  Identities=13%  Similarity=0.133  Sum_probs=107.3

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhcCC-CCCCCccc-cceeeEEEEEEECCeEEEEEEEeCCChhhhchh---------
Q 028792            5 YDYLFKLLLIGDSGVGKSCLLLRFADDS-YLESYIST-IGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI---------   73 (203)
Q Consensus         5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~---------   73 (203)
                      ....++|+|+|.+|+|||||+++|++.. +.....++ ++.......+..++  ..+.+|||||...+...         
T Consensus        19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~   96 (260)
T 2xtp_A           19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQ   96 (260)
T ss_dssp             --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHH
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHH
Confidence            3467999999999999999999999876 33333343 44445555566666  67899999997654221         


Q ss_pred             --hhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCC--CCcEEEEEe-CCCCCCCcccCH-------HHHHHHHH
Q 028792           74 --TSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASE--NVNKLLVGN-KCDLTANKVVSY-------ETAKAFAD  141 (203)
Q Consensus        74 --~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~--~~p~iiv~n-K~D~~~~~~~~~-------~~~~~~~~  141 (203)
                        ....+..+|++++|+|+++.....  ..++..+......  ..|.++++| |+|+.... +..       +++..+..
T Consensus        97 ~~~~~~~~~~d~il~V~d~~~~~~~~--~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~-~~~~i~~~~~~~~~~~~~  173 (260)
T 2xtp_A           97 RCYLLSAPGPHVLLLVTQLGRYTSQD--QQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGS-LMDYMHDSDNKALSKLVA  173 (260)
T ss_dssp             HHHHHHTTCCSEEEEEEETTCCCHHH--HHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCC-HHHHHHHCCCHHHHHHHH
T ss_pred             HHHHhcCCCCcEEEEEEeCCCCCHHH--HHHHHHHHHHhCchhhccEEEEEEcccccCCcc-HHHHHHhcchHHHHHHHH
Confidence              223568899999999998622211  1122223222111  356677776 99987432 111       22444555


Q ss_pred             HcCCCE-----EEEecCCCCCHHHHHHHHHHHHHHH
Q 028792          142 EIGIPF-----METSAKSATNVEQAFMAMAASIKNR  172 (203)
Q Consensus       142 ~~~~~~-----~~~Sa~~~~gi~~~~~~l~~~~~~~  172 (203)
                      ..+..+     +++||++|.|++++|.+|.+.+...
T Consensus       174 ~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~  209 (260)
T 2xtp_A          174 ACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEK  209 (260)
T ss_dssp             HTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhC
Confidence            555432     7899999999999999999988764

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.88  E-value=1.6e-21  Score=155.66  Aligned_cols=158  Identities=18%  Similarity=0.218  Sum_probs=103.8

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCC---CCCCCcc--ccceeeEEEEEEE-------------C--C----eEEEEEE
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDS---YLESYIS--TIGVDFKIRTVEQ-------------D--G----KTIKLQI   61 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~---~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~~i   61 (203)
                      ...++|+++|..++|||||+++|.+..   +.....+  |+...+....+..             +  +    ....+.+
T Consensus         6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i   85 (408)
T 1s0u_A            6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF   85 (408)
T ss_dssp             CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence            356999999999999999999998543   3333334  3333333333221             1  1    1368999


Q ss_pred             EeCCChhhhchhhhccccCCcEEEEEEeCCCh----hhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc--cCHHH
Q 028792           62 WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQ----ESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKV--VSYET  135 (203)
Q Consensus        62 ~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~--~~~~~  135 (203)
                      ||+||++.|.......+..+|++++|+|+++.    ++.+.+.    .+...  ...|+++++||+|+.+...  ...++
T Consensus        86 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~----~~~~l--~~~~iivv~NK~Dl~~~~~~~~~~~~  159 (408)
T 1s0u_A           86 VDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLM----ALEIL--GIDKIIIVQNKIDLVDEKQAEENYEQ  159 (408)
T ss_dssp             EECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHH----HHHHT--TCCCEEEEEECTTSSCTTTTTTHHHH
T ss_pred             EECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHH----HHHHc--CCCeEEEEEEccCCCCHHHHHHHHHH
Confidence            99999999888777788899999999999853    3433332    22222  1258999999999976543  23455


Q ss_pred             HHHHHHH---cCCCEEEEecCCCCCHHHHHHHHHHHH
Q 028792          136 AKAFADE---IGIPFMETSAKSATNVEQAFMAMAASI  169 (203)
Q Consensus       136 ~~~~~~~---~~~~~~~~Sa~~~~gi~~~~~~l~~~~  169 (203)
                      +.+++..   .+++++++||++|+|+++++++|.+.+
T Consensus       160 i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i  196 (408)
T 1s0u_A          160 IKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFI  196 (408)
T ss_dssp             HHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHS
T ss_pred             HHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence            6666654   357899999999999999999998755

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.88  E-value=2.3e-23  Score=167.61  Aligned_cols=177  Identities=19%  Similarity=0.157  Sum_probs=110.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCC-CCccccceeeEEEEEEECCeEEEEEEEeCCChh--------hhchhhhccc
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFADDSYLE-SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE--------RFRTITSSYY   78 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~~~   78 (203)
                      ..+|+++|.+|||||||+|+|.+..... ...+..+.+.....+.+++  ..+.+|||||..        ++...+..++
T Consensus         3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~   80 (436)
T 2hjg_A            3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN--YDFNLIDTGGIDIGDEPFLAQIRQQAEIAM   80 (436)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCS--SCCEEEC---------CHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECC--ceEEEEECCCCCCcchhHHHHHHHHHHHHH
Confidence            3689999999999999999999876542 2223333333334444444  578999999975        5666677788


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-CEEEEecCCCCC
Q 028792           79 RGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGI-PFMETSAKSATN  157 (203)
Q Consensus        79 ~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~g  157 (203)
                      ..+|++++|+|+.++.+.... .+...+.   ..+.|+++|+||+|+.....    +..++. .++. +++++||++|.|
T Consensus        81 ~~ad~il~vvD~~~~~~~~d~-~~~~~l~---~~~~pvilv~NK~D~~~~~~----~~~~~~-~lg~~~~~~iSA~~g~g  151 (436)
T 2hjg_A           81 DEADVIIFMVNGREGVTAADE-EVAKILY---RTKKPVVLAVNKLDNTEMRA----NIYDFY-SLGFGEPYPISGTHGLG  151 (436)
T ss_dssp             HHCSEEEEEEETTTCSCHHHH-HHHHHHT---TCCSCEEEEEECCCC---------CCCSSG-GGSSCCCEECBTTTTBT
T ss_pred             HhCCEEEEEEeCCCCCCHHHH-HHHHHHH---HcCCCEEEEEECccCccchh----hHHHHH-HcCCCCeEEEeCcCCCC
Confidence            999999999999886654331 2222232   34789999999999865321    111222 3454 799999999999


Q ss_pred             HHHHHHHHHHHHHHHhccCCCCCCCCCCccccCCCCCCCCC
Q 028792          158 VEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPVNQKS  198 (203)
Q Consensus       158 i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (203)
                      ++++++++.+.+.+..   .........+....+.++.+||
T Consensus       152 v~~L~~~i~~~l~~~~---~~~~~~~~~ki~lvG~~nvGKS  189 (436)
T 2hjg_A          152 LGDLLDAVAEHFKNIP---ETKYNEEVIQFCLIGRPNVGKS  189 (436)
T ss_dssp             HHHHHHHHHHTGGGCC---SSCCCTTCEEEEEECSTTSSHH
T ss_pred             hHHHHHHHHHhcCccc---cccccccCcEEEEEcCCCCCHH
Confidence            9999999988775321   1112234455666666666654

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.88  E-value=2.7e-21  Score=154.07  Aligned_cols=164  Identities=15%  Similarity=0.178  Sum_probs=114.3

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEE---------EE-------EEE---CCeEEEEEEEeC
Q 028792            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKI---------RT-------VEQ---DGKTIKLQIWDT   64 (203)
Q Consensus         4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~---------~~-------~~~---~~~~~~~~i~D~   64 (203)
                      .....++|+++|.+++|||||+++|.+........... .....         ..       ...   ......+.+||+
T Consensus         4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDt   82 (403)
T 3sjy_A            4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAE-TNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDA   82 (403)
T ss_dssp             CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEE-EEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEEC
T ss_pred             ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccc-cceeeccccccccceecccccccccccccccccceEEEEEC
Confidence            34567999999999999999999999754332110000 00000         00       000   112267999999


Q ss_pred             CChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc--CHHHHHHHHHH
Q 028792           65 AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVV--SYETAKAFADE  142 (203)
Q Consensus        65 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~--~~~~~~~~~~~  142 (203)
                      ||+..+.......+..+|++++|+|+++..++.....++..+....  ..|+++++||+|+.+....  ..+++.++...
T Consensus        83 PGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~--~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~  160 (403)
T 3sjy_A           83 PGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEEALSQYRQIKQFTKG  160 (403)
T ss_dssp             CCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHHHHTT
T ss_pred             CCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC--CCCEEEEEECccccchHHHHHHHHHHHHHHHh
Confidence            9999999888889999999999999998766666677766555443  2589999999998754322  11223333322


Q ss_pred             c---CCCEEEEecCCCCCHHHHHHHHHHHHH
Q 028792          143 I---GIPFMETSAKSATNVEQAFMAMAASIK  170 (203)
Q Consensus       143 ~---~~~~~~~Sa~~~~gi~~~~~~l~~~~~  170 (203)
                      .   +++++++||++|+|+++++++|.+.+.
T Consensus       161 ~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~  191 (403)
T 3sjy_A          161 TWAENVPIIPVSALHKINIDSLIEGIEEYIK  191 (403)
T ss_dssp             STTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             hCCCCCEEEEEECCCCcChHHHHHHHHHhCC
Confidence            2   578999999999999999999987653

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.88  E-value=4.8e-22  Score=155.07  Aligned_cols=125  Identities=22%  Similarity=0.252  Sum_probs=102.3

Q ss_pred             EEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCC----------hhhHHHHHHHHHHHHhhc-CCCCc
Q 028792           47 IRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTD----------QESFNNVKQWLNEIDRYA-SENVN  115 (203)
Q Consensus        47 ~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~l~~~~-~~~~p  115 (203)
                      ...+..++  +.+++||++|+++++..|..++.+++++|||+|+++          ..++.+...|+..+.... ..+.|
T Consensus       185 ~~~~~~~~--~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~p  262 (353)
T 1cip_A          185 ETHFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTS  262 (353)
T ss_dssp             EEEEEETT--EEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSE
T ss_pred             EEEEeeCC--eeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCc
Confidence            34455554  889999999999999999999999999999999998          467888888888876542 24689


Q ss_pred             EEEEEeCCCCCCCc---------------ccCHHHHHHHHH-----------HcCCCEEEEecCCCCCHHHHHHHHHHHH
Q 028792          116 KLLVGNKCDLTANK---------------VVSYETAKAFAD-----------EIGIPFMETSAKSATNVEQAFMAMAASI  169 (203)
Q Consensus       116 ~iiv~nK~D~~~~~---------------~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~gi~~~~~~l~~~~  169 (203)
                      +++++||.|+....               ..+.+++..++.           ..++.+++|||+++.|+.++|.++.+.+
T Consensus       263 iiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i  342 (353)
T 1cip_A          263 IILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVI  342 (353)
T ss_dssp             EEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             EEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHH
Confidence            99999999985322               256778888776           3457899999999999999999999988


Q ss_pred             HHHh
Q 028792          170 KNRM  173 (203)
Q Consensus       170 ~~~~  173 (203)
                      .+..
T Consensus       343 ~~~~  346 (353)
T 1cip_A          343 IKNN  346 (353)
T ss_dssp             HHHC
T ss_pred             HHHH
Confidence            7543

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.88  E-value=1.4e-21  Score=157.32  Aligned_cols=165  Identities=22%  Similarity=0.228  Sum_probs=110.3

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCC-CCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhh----------
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYL-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTIT----------   74 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~----------   74 (203)
                      +..++|+++|++|||||||+|+|.+.... ....++++.+.....+.+++.  .+.+||++|..+.....          
T Consensus       178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~  255 (439)
T 1mky_A          178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNY  255 (439)
T ss_dssp             CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCH
T ss_pred             ccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHH
Confidence            35689999999999999999999987642 222344444555566777774  67899999974432211          


Q ss_pred             --hccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHH-HHH----HcCCCE
Q 028792           75 --SSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKA-FAD----EIGIPF  147 (203)
Q Consensus        75 --~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~-~~~----~~~~~~  147 (203)
                        ...+..+|++++|+|+++..+.... .+...+.   ..+.|+++++||+|+.+......++..+ +..    ...+++
T Consensus       256 ~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~---~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (439)
T 1mky_A          256 RVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLME---RRGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPL  331 (439)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHH---HTTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCE
T ss_pred             HHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHH---HcCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcE
Confidence              2345779999999999876554432 1222222   2368999999999997655444443332 222    235799


Q ss_pred             EEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 028792          148 METSAKSATNVEQAFMAMAASIKNRMASQ  176 (203)
Q Consensus       148 ~~~Sa~~~~gi~~~~~~l~~~~~~~~~~~  176 (203)
                      +++||++|.|++++|+.+.+.+.++..+.
T Consensus       332 ~~~SA~~g~gv~~l~~~i~~~~~~~~~~i  360 (439)
T 1mky_A          332 IFTSADKGWNIDRMIDAMNLAYASYTTKV  360 (439)
T ss_dssp             EECBTTTTBSHHHHHHHHHHHHHHHTCCC
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHhhcccC
Confidence            99999999999999999998887765443

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.88  E-value=1.1e-22  Score=154.24  Aligned_cols=161  Identities=16%  Similarity=0.231  Sum_probs=93.7

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhcCCCCC-CC-------ccccceeeEEEEEEECCeEEEEEEEeCCChhh-------
Q 028792            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLE-SY-------ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER-------   69 (203)
Q Consensus         5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~-------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------   69 (203)
                      ....++|+++|.+|+|||||+|+|++..... .+       .++.+.+.....+..++..+.+.+|||||...       
T Consensus         5 ~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~   84 (274)
T 3t5d_A            5 SGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC   84 (274)
T ss_dssp             --CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTT
T ss_pred             CccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhh
Confidence            4567999999999999999999988655433 22       45555566656665666667999999999621       


Q ss_pred             hchhh-------hccc-------------cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc
Q 028792           70 FRTIT-------SSYY-------------RGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANK  129 (203)
Q Consensus        70 ~~~~~-------~~~~-------------~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~  129 (203)
                      +....       ..++             ..+|+++++++.+.......-..++..+.   . +.|+++|+||+|+....
T Consensus        85 ~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~---~-~~pvi~V~nK~D~~~~~  160 (274)
T 3t5d_A           85 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH---E-KVNIIPLIAKADTLTPE  160 (274)
T ss_dssp             THHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHT---T-TSCEEEEESSGGGSCHH
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHh---c-cCCEEEEEeccCCCCHH
Confidence            22221       1111             33789999998765321111122333332   2 68999999999986543


Q ss_pred             ccC--HHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHHHH
Q 028792          130 VVS--YETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI  169 (203)
Q Consensus       130 ~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~  169 (203)
                      +..  .+.+.+.....+++++++||.+++|+++++.+|.+.+
T Consensus       161 e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~  202 (274)
T 3t5d_A          161 ECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL  202 (274)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence            321  1334555667789999999999999999999987654

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.88  E-value=9.9e-22  Score=162.48  Aligned_cols=158  Identities=22%  Similarity=0.273  Sum_probs=110.1

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCC--CCC-------------CCccccceeeEEEEEEE---CCeEEEEEEEeCCChh
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFADDS--YLE-------------SYISTIGVDFKIRTVEQ---DGKTIKLQIWDTAGQE   68 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~~~--~~~-------------~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~g~~   68 (203)
                      +..+|+|+|+.++|||||+++|+...  ...             +.....+.......+.+   ++..+.+++|||||+.
T Consensus         3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~   82 (599)
T 3cb4_D            3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV   82 (599)
T ss_dssp             TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence            56899999999999999999998521  110             00111122222222322   4556899999999999


Q ss_pred             hhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC---
Q 028792           69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGI---  145 (203)
Q Consensus        69 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~---  145 (203)
                      .+...+...+..+|++|+|+|+++..+......|...+.    .+.|+++++||+|+....  ..+...++...++.   
T Consensus        83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~----~~ipiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~~  156 (599)
T 3cb4_D           83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME----MDLEVVPVLNKIDLPAAD--PERVAEEIEDIVGIDAT  156 (599)
T ss_dssp             GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHHTCCCCT
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEeeeccCccccc--HHHHHHHHHHHhCCCcc
Confidence            999888889999999999999998766666666655442    368999999999997643  22334556666665   


Q ss_pred             CEEEEecCCCCCHHHHHHHHHHHHH
Q 028792          146 PFMETSAKSATNVEQAFMAMAASIK  170 (203)
Q Consensus       146 ~~~~~Sa~~~~gi~~~~~~l~~~~~  170 (203)
                      .++++||++|.|+++++++|.+.+.
T Consensus       157 ~vi~vSAktg~GI~~Ll~~I~~~lp  181 (599)
T 3cb4_D          157 DAVRCSAKTGVGVQDVLERLVRDIP  181 (599)
T ss_dssp             TCEEECTTTCTTHHHHHHHHHHHSC
T ss_pred             eEEEeecccCCCchhHHHHHhhcCC
Confidence            4999999999999999999988764

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.87  E-value=1.7e-21  Score=155.65  Aligned_cols=160  Identities=18%  Similarity=0.233  Sum_probs=111.1

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhcCC---CCCCCcc--ccceeeEEEEEEE-------------C--C----eEEEEE
Q 028792            5 YDYLFKLLLIGDSGVGKSCLLLRFADDS---YLESYIS--TIGVDFKIRTVEQ-------------D--G----KTIKLQ   60 (203)
Q Consensus         5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~---~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~~   60 (203)
                      ....++|+++|+.++|||||+++|.+..   ...+..+  |+...+....+..             +  +    ....+.
T Consensus         7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~   86 (410)
T 1kk1_A            7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS   86 (410)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence            4567999999999999999999998532   3333334  3333333333211             1  1    136799


Q ss_pred             EEeCCChhhhchhhhccccCCcEEEEEEeCCCh----hhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc--cCHH
Q 028792           61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQ----ESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKV--VSYE  134 (203)
Q Consensus        61 i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~--~~~~  134 (203)
                      +||+||+..|.......+..+|++|+|+|+++.    ++.+.+.    .+....  ..|+++++||+|+.+...  ...+
T Consensus        87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~----~~~~~~--~~~iivviNK~Dl~~~~~~~~~~~  160 (410)
T 1kk1_A           87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLM----ALQIIG--QKNIIIAQNKIELVDKEKALENYR  160 (410)
T ss_dssp             EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHH----HHHHHT--CCCEEEEEECGGGSCHHHHHHHHH
T ss_pred             EEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHH----HHHHcC--CCcEEEEEECccCCCHHHHHHHHH
Confidence            999999999888777778899999999999853    3433332    222222  258899999999876432  1233


Q ss_pred             HHHHHHHH---cCCCEEEEecCCCCCHHHHHHHHHHHHH
Q 028792          135 TAKAFADE---IGIPFMETSAKSATNVEQAFMAMAASIK  170 (203)
Q Consensus       135 ~~~~~~~~---~~~~~~~~Sa~~~~gi~~~~~~l~~~~~  170 (203)
                      ++.++...   .+++++++||++|+|+++++++|.+.+.
T Consensus       161 ~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~  199 (410)
T 1kk1_A          161 QIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP  199 (410)
T ss_dssp             HHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             HHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence            45555543   3578999999999999999999987553

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.87  E-value=9.3e-22  Score=158.15  Aligned_cols=157  Identities=18%  Similarity=0.131  Sum_probs=106.6

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhcCCC-------------------------------CCCCccccceeeEEEEEEEC
Q 028792            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSY-------------------------------LESYISTIGVDFKIRTVEQD   53 (203)
Q Consensus         5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~   53 (203)
                      ....++|+++|.+++|||||+++|+....                               ..+..+.++.+.....+..+
T Consensus        14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~   93 (439)
T 3j2k_7           14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE   93 (439)
T ss_pred             CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence            34569999999999999999999964311                               11122344555555555555


Q ss_pred             CeEEEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChhh---HHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCc
Q 028792           54 GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQES---FNNVKQWLNEIDRYASENVN-KLLVGNKCDLTANK  129 (203)
Q Consensus        54 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~~~~~~~~~l~~~~~~~~p-~iiv~nK~D~~~~~  129 (203)
                      +  ..+.+||+||+.+|.......+..+|++++|+|+++...   |+...++...+......+.| +++++||+|+....
T Consensus        94 ~--~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~  171 (439)
T 3j2k_7           94 K--KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVN  171 (439)
T ss_pred             C--eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcccc
Confidence            5  689999999999998888888999999999999987532   21111222222222223566 89999999985321


Q ss_pred             --c----cCHHHHHHHHHHcC------CCEEEEecCCCCCHHHHHH
Q 028792          130 --V----VSYETAKAFADEIG------IPFMETSAKSATNVEQAFM  163 (203)
Q Consensus       130 --~----~~~~~~~~~~~~~~------~~~~~~Sa~~~~gi~~~~~  163 (203)
                        .    ...+++..++...+      ++++++||++|+|++++++
T Consensus       172 ~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          172 WSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             hHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence              1    11233444554444      5799999999999999766

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.87  E-value=2e-21  Score=160.39  Aligned_cols=160  Identities=22%  Similarity=0.282  Sum_probs=113.3

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhcC--CCCC-------------CCccccceeeEEEEEEE---CCeEEEEEEEeCCC
Q 028792            5 YDYLFKLLLIGDSGVGKSCLLLRFADD--SYLE-------------SYISTIGVDFKIRTVEQ---DGKTIKLQIWDTAG   66 (203)
Q Consensus         5 ~~~~~~i~i~G~~~~GKSsli~~l~~~--~~~~-------------~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~g   66 (203)
                      .++..+|+++|+.++|||||+++|+..  ....             +....++.......+.+   ++..+.+++|||||
T Consensus         3 ~~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPG   82 (600)
T 2ywe_A            3 QKNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPG   82 (600)
T ss_dssp             GGGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCC
T ss_pred             ccCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCC
Confidence            356789999999999999999999752  1110             00111111111122222   45568899999999


Q ss_pred             hhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-
Q 028792           67 QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGI-  145 (203)
Q Consensus        67 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-  145 (203)
                      +..+...+...+..+|++++|+|+++..+......|.....    .+.|+++++||+|+....  ..+...++....++ 
T Consensus        83 h~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~ipiIvviNKiDl~~a~--~~~v~~el~~~lg~~  156 (600)
T 2ywe_A           83 HVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINKIDLPSAD--VDRVKKQIEEVLGLD  156 (600)
T ss_dssp             SGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHTSCCC
T ss_pred             cHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----CCCCEEEEEeccCccccC--HHHHHHHHHHhhCCC
Confidence            99998888888999999999999998777666666655432    368999999999987543  12334555566665 


Q ss_pred             --CEEEEecCCCCCHHHHHHHHHHHHH
Q 028792          146 --PFMETSAKSATNVEQAFMAMAASIK  170 (203)
Q Consensus       146 --~~~~~Sa~~~~gi~~~~~~l~~~~~  170 (203)
                        .++++||++|.|+++++++|.+.+.
T Consensus       157 ~~~vi~vSAktg~GI~~Lle~I~~~lp  183 (600)
T 2ywe_A          157 PEEAILASAKEGIGIEEILEAIVNRIP  183 (600)
T ss_dssp             GGGCEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             cccEEEEEeecCCCchHHHHHHHHhcc
Confidence              4999999999999999999988664

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.87  E-value=2.9e-21  Score=148.28  Aligned_cols=158  Identities=16%  Similarity=0.143  Sum_probs=107.8

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCC-CccccceeeEEEEEEECCeEEEEEEEeCCChh---------hhchhhh
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLES-YISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE---------RFRTITS   75 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~---------~~~~~~~   75 (203)
                      -+..+|+++|++|+|||||+++|++...... ..+..+.......+..++  ..+.+|||||..         .+.....
T Consensus         6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~--~~i~~iDTpG~~~~~~~~l~~~~~~~~~   83 (301)
T 1ega_A            6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAAS   83 (301)
T ss_dssp             CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTT
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC--eeEEEEECcCCCccchhhHHHHHHHHHH
Confidence            3456899999999999999999998765421 222222222223334444  678999999986         2333445


Q ss_pred             ccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-CEEEEecCC
Q 028792           76 SYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGI-PFMETSAKS  154 (203)
Q Consensus        76 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~  154 (203)
                      ..+..+|++++|+|+++ -+  ....++..  .....+.|+++++||+|+........+.+.++...++. .++++||++
T Consensus        84 ~~l~~~D~vl~Vvd~~~-~~--~~~~~i~~--~l~~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~  158 (301)
T 1ega_A           84 SSIGDVELVIFVVEGTR-WT--PDDEMVLN--KLREGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAET  158 (301)
T ss_dssp             SCCCCEEEEEEEEETTC-CC--HHHHHHHH--HHHSSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred             HHHhcCCEEEEEEeCCC-CC--HHHHHHHH--HHHhcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCC
Confidence            67889999999999976 22  22223222  22234689999999999875322223444555555665 699999999


Q ss_pred             CCCHHHHHHHHHHHHH
Q 028792          155 ATNVEQAFMAMAASIK  170 (203)
Q Consensus       155 ~~gi~~~~~~l~~~~~  170 (203)
                      +.|++++++++...+.
T Consensus       159 g~~v~~l~~~i~~~l~  174 (301)
T 1ega_A          159 GLNVDTIAAIVRKHLP  174 (301)
T ss_dssp             TTTHHHHHHHHHTTCC
T ss_pred             CCCHHHHHHHHHHhCC
Confidence            9999999999987653

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.87  E-value=6.6e-24  Score=173.14  Aligned_cols=160  Identities=18%  Similarity=0.156  Sum_probs=115.3

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      ++.++|+++|++++|||||+++|.+..+.....++++.++....+..++. ..+.+|||||+..|..++...+..+|+++
T Consensus         2 ~r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g-~~i~~iDTPGhe~f~~~~~~~~~~aD~vI   80 (537)
T 3izy_P            2 PRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSG-EKITFLDTPGHAAFSAMRARGTQVTDIVI   80 (537)
T ss_dssp             CCCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCS-SCCBCEECSSSCCTTTSBBSSSBSBSSCE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCC-CEEEEEECCChHHHHHHHHHHHccCCEEE
Confidence            45689999999999999999999976665555555555555544444221 36889999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccC-HHHHHHH---HHHc--CCCEEEEecCCCCCHH
Q 028792           86 VVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVS-YETAKAF---ADEI--GIPFMETSAKSATNVE  159 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~-~~~~~~~---~~~~--~~~~~~~Sa~~~~gi~  159 (203)
                      +|+|+++.....    +...+......+.|+++++||+|+....... ..+...+   +..+  .++++++||++|.|++
T Consensus        81 LVVDa~dg~~~q----t~e~l~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~  156 (537)
T 3izy_P           81 LVVAADDGVMKQ----TVESIQHAKDAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMM  156 (537)
T ss_dssp             EECBSSSCCCHH----HHHHHHHHHTTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSH
T ss_pred             EEEECCCCccHH----HHHHHHHHHHcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCch
Confidence            999999865432    2233333334478999999999986532211 1112111   1111  2479999999999999


Q ss_pred             HHHHHHHHHHH
Q 028792          160 QAFMAMAASIK  170 (203)
Q Consensus       160 ~~~~~l~~~~~  170 (203)
                      ++|++|...+.
T Consensus       157 eLle~I~~l~~  167 (537)
T 3izy_P          157 ALAEATIALAE  167 (537)
T ss_dssp             HHHHHHHHHHT
T ss_pred             hHHHHHHHhhh
Confidence            99999987654

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.86  E-value=1.9e-22  Score=163.09  Aligned_cols=182  Identities=19%  Similarity=0.126  Sum_probs=109.8

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCC--------hhhhchhhh
Q 028792            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG--------QERFRTITS   75 (203)
Q Consensus         4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g--------~~~~~~~~~   75 (203)
                      ......+|+++|.+|||||||+|+|.+...... ..+.+.+..............+.+|||||        +.++.....
T Consensus        19 ~~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v-~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~   97 (456)
T 4dcu_A           19 SHMGKPVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAE   97 (456)
T ss_dssp             ----CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHH
T ss_pred             hhcCCCEEEEECCCCCcHHHHHHHHhCCCCccc-CCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHH
Confidence            344568999999999999999999998765422 12233333333333333346789999999        667777788


Q ss_pred             ccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC-CCEEEEecCC
Q 028792           76 SYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIG-IPFMETSAKS  154 (203)
Q Consensus        76 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~  154 (203)
                      .++..+|+++||+|+.+..+..  ..++..+.  ...+.|+++|+||+|+.+..    ....++. ..+ ..++++||++
T Consensus        98 ~~~~~ad~il~VvD~~~~~~~~--d~~l~~~l--~~~~~pvilV~NK~D~~~~~----~~~~e~~-~lg~~~~~~iSA~~  168 (456)
T 4dcu_A           98 IAMDEADVIIFMVNGREGVTAA--DEEVAKIL--YRTKKPVVLAVNKLDNTEMR----ANIYDFY-SLGFGEPYPISGTH  168 (456)
T ss_dssp             HHHHHCSEEEEEEESSSCSCHH--HHHHHHHH--TTCCSCEEEEEECC-------------CCSG-GGSSSSEEECCTTT
T ss_pred             hhHhhCCEEEEEEeCCCCCChH--HHHHHHHH--HHcCCCEEEEEECccchhhh----hhHHHHH-HcCCCceEEeeccc
Confidence            8899999999999987643322  22222222  22478999999999986431    1111222 223 3678999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhccCCCCCCCCCCccccCCCCCCCCC
Q 028792          155 ATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPVNQKS  198 (203)
Q Consensus       155 ~~gi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (203)
                      |.|+.++++++.+.+....   .........+....+.+..+||
T Consensus       169 g~gv~~L~~~i~~~l~~~~---~~~~~~~~~ki~ivG~~~vGKS  209 (456)
T 4dcu_A          169 GLGLGDLLDAVAEHFKNIP---ETKYNEEVIQFCLIGRPNVGKS  209 (456)
T ss_dssp             CTTHHHHHHHHHTTGGGSC---SSCCCTTCEEEEEECSTTSSHH
T ss_pred             ccchHHHHHHHHhhccccc---ccccccccceeEEecCCCCCHH
Confidence            9999999999987654321   1112234445555555555544

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.86  E-value=1.3e-21  Score=159.29  Aligned_cols=151  Identities=18%  Similarity=0.153  Sum_probs=98.9

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCC-------------------------------CCCCccccceeeEEEEEEECCe
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFADDSY-------------------------------LESYISTIGVDFKIRTVEQDGK   55 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~   55 (203)
                      ..++|+++|.+++|||||+++|+....                               .....+.++.+.....+...  
T Consensus        32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~--  109 (483)
T 3p26_A           32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH--  109 (483)
T ss_dssp             CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS--
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC--
Confidence            469999999999999999999975411                               11111223333333344443  


Q ss_pred             EEEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChhhHHH------HHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc
Q 028792           56 TIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNN------VKQWLNEIDRYASENVNKLLVGNKCDLTANK  129 (203)
Q Consensus        56 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~------~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~  129 (203)
                      ...+.+||+||+.+|.......+..+|++++|+|+++......      ....+..+...  ...|+++++||+|+.+..
T Consensus       110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~--~~~~iIvviNK~Dl~~~~  187 (483)
T 3p26_A          110 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVDWS  187 (483)
T ss_dssp             SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT--TCCCEEEEEECGGGGTTC
T ss_pred             CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc--CCCcEEEEEECcCcccch
Confidence            3789999999999999989999999999999999998643321      12222222222  125699999999997643


Q ss_pred             ccCHHHH----HHHHHHc-----CCCEEEEecCCCCCHHHH
Q 028792          130 VVSYETA----KAFADEI-----GIPFMETSAKSATNVEQA  161 (203)
Q Consensus       130 ~~~~~~~----~~~~~~~-----~~~~~~~Sa~~~~gi~~~  161 (203)
                      ....+++    ..+....     +++++++||++|+|++++
T Consensus       188 ~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el  228 (483)
T 3p26_A          188 QQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  228 (483)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred             HHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcccc
Confidence            3333333    3333333     357999999999999853

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.86  E-value=5.9e-21  Score=147.03  Aligned_cols=127  Identities=19%  Similarity=0.203  Sum_probs=101.4

Q ss_pred             eEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEEeCC----------ChhhHHHHHHHHHHHHhhcC-CC
Q 028792           45 FKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVT----------DQESFNNVKQWLNEIDRYAS-EN  113 (203)
Q Consensus        45 ~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~l~~~~~-~~  113 (203)
                      +....+..++  +.+++||++|+++++..|..++.+++++|||+|++          +.+++.+...|+..+..... .+
T Consensus       157 i~~~~~~~~~--v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~  234 (327)
T 3ohm_A          157 IIEYPFDLQS--VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQN  234 (327)
T ss_dssp             EEEEEEEETT--EEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTT
T ss_pred             EEEEEEEeec--eeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCC
Confidence            3444455555  88999999999999999999999999999999665          56778888888777755432 47


Q ss_pred             CcEEEEEeCCCCCCCc----------------ccCHHHHHHHHH----------HcCCCEEEEecCCCCCHHHHHHHHHH
Q 028792          114 VNKLLVGNKCDLTANK----------------VVSYETAKAFAD----------EIGIPFMETSAKSATNVEQAFMAMAA  167 (203)
Q Consensus       114 ~p~iiv~nK~D~~~~~----------------~~~~~~~~~~~~----------~~~~~~~~~Sa~~~~gi~~~~~~l~~  167 (203)
                      .|+++++||+|+.+.+                ..+.+++.+++.          ..++.+++|||+++.||+.+|..+.+
T Consensus       235 ~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~  314 (327)
T 3ohm_A          235 SSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKD  314 (327)
T ss_dssp             CEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             ceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHH
Confidence            8999999999986432                356777777743          34567899999999999999999999


Q ss_pred             HHHHHh
Q 028792          168 SIKNRM  173 (203)
Q Consensus       168 ~~~~~~  173 (203)
                      .+.+..
T Consensus       315 ~Il~~~  320 (327)
T 3ohm_A          315 TILQLN  320 (327)
T ss_dssp             HHHHTT
T ss_pred             HHHHHh
Confidence            998653

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.86  E-value=2.4e-22  Score=157.79  Aligned_cols=162  Identities=22%  Similarity=0.337  Sum_probs=89.6

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCC-CCCc--------cccceeeEEEEEEECCeEEEEEEEeCCCh-------hh
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYL-ESYI--------STIGVDFKIRTVEQDGKTIKLQIWDTAGQ-------ER   69 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~--------~~~~~~~~~~~~~~~~~~~~~~i~D~~g~-------~~   69 (203)
                      +..++|+|+|++|+|||||+++|++.... ..+.        ++.+.......+..++..+.+.+||+||.       +.
T Consensus        35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~  114 (361)
T 2qag_A           35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC  114 (361)
T ss_dssp             CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence            45689999999999999999998764332 2221        33333333333444565678999999998       55


Q ss_pred             hchhhh-------ccccC-------------CcEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 028792           70 FRTITS-------SYYRG-------------AHGIIVVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTAN  128 (203)
Q Consensus        70 ~~~~~~-------~~~~~-------------~d~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~~  128 (203)
                      +..++.       .++..             +|+++|+++.. ..++..+. .++..+    ..+.|+|+|+||+|+...
T Consensus       115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l----~~~~piIlV~NK~Dl~~~  189 (361)
T 2qag_A          115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAI----HNKVNIVPVIAKADTLTL  189 (361)
T ss_dssp             -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHT----CS-SCEEEEEECCSSSCH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHh----ccCCCEEEEEECCCCCCH
Confidence            555443       33322             24555555542 23333333 233222    347899999999999765


Q ss_pred             cccCH--HHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 028792          129 KVVSY--ETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRM  173 (203)
Q Consensus       129 ~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~  173 (203)
                      .++..  +.+.+++..++++++++||+++.+ ++.|.++.+.+.+..
T Consensus       190 ~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~i  235 (361)
T 2qag_A          190 KERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKASI  235 (361)
T ss_dssp             HHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhcC
Confidence            54433  456677777789999999999999 999999998887543

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.85  E-value=4.9e-21  Score=156.68  Aligned_cols=117  Identities=15%  Similarity=0.105  Sum_probs=84.6

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCC------------------CCC----CCccccceeeEEEEEEECCeEEEEEEEe
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDS------------------YLE----SYISTIGVDFKIRTVEQDGKTIKLQIWD   63 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~------------------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~D   63 (203)
                      .+..+|+|+|.+|+|||||+++|+...                  ...    ...+.++.......+.+.+  ..+++||
T Consensus        11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~liD   88 (528)
T 3tr5_A           11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD--YLINLLD   88 (528)
T ss_dssp             HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT--EEEEEEC
T ss_pred             hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC--EEEEEEE
Confidence            456899999999999999999996211                  000    0012223333444555555  7899999


Q ss_pred             CCChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 028792           64 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN  128 (203)
Q Consensus        64 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~  128 (203)
                      |||+..+...+...+..+|++++|+|+++.........|. .+.   ..+.|+++|+||+|+...
T Consensus        89 TPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~-~~~---~~~iPiivviNK~Dl~~~  149 (528)
T 3tr5_A           89 TPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLME-VCR---LRHTPIMTFINKMDRDTR  149 (528)
T ss_dssp             CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHH-HHH---TTTCCEEEEEECTTSCCS
T ss_pred             CCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHH---HcCCCEEEEEeCCCCccc
Confidence            9999999998999999999999999999866654444432 222   336899999999998643

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.85  E-value=1.5e-21  Score=140.37  Aligned_cols=116  Identities=22%  Similarity=0.360  Sum_probs=86.8

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhcCCCCCC---CccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccC-
Q 028792            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLES---YISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRG-   80 (203)
Q Consensus         5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~-   80 (203)
                      ..+.++|+++|++|||||||+++|.+..+...   ..++.+..+         ....+.+||+||...+...+..++.. 
T Consensus        45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~  115 (193)
T 2ged_A           45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTR  115 (193)
T ss_dssp             -CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC---------CCTTCSEEEETTCCBSSCCHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee---------cCCeEEEEECCCCchHHHHHHHHHHhh
Confidence            45679999999999999999999998775442   222222111         23568899999998887777666655 


Q ss_pred             ---CcEEEEEEeCC-ChhhHHHHHHHHHHHHhh----cCCCCcEEEEEeCCCCCCCc
Q 028792           81 ---AHGIIVVYDVT-DQESFNNVKQWLNEIDRY----ASENVNKLLVGNKCDLTANK  129 (203)
Q Consensus        81 ---~d~~i~v~d~~-~~~s~~~~~~~~~~l~~~----~~~~~p~iiv~nK~D~~~~~  129 (203)
                         +|++++|+|++ +++++..+..|+..+...    ...+.|+++|+||+|+.+..
T Consensus       116 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~  172 (193)
T 2ged_A          116 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR  172 (193)
T ss_dssp             GGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred             cccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCC
Confidence               89999999999 899999888887776543    23479999999999997654

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.85  E-value=5.5e-21  Score=149.09  Aligned_cols=119  Identities=19%  Similarity=0.271  Sum_probs=93.6

Q ss_pred             eEEEEEEEeCCChhhhchhhhccccCCcEEEEEEeCC----------ChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCC
Q 028792           55 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVT----------DQESFNNVKQWLNEIDRYA-SENVNKLLVGNKC  123 (203)
Q Consensus        55 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~  123 (203)
                      ..+.+++||++|+++++..|..++.+++++|||||++          +.+++.+...|+..+.... ..+.|+++|+||+
T Consensus       181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~  260 (354)
T 2xtz_A          181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF  260 (354)
T ss_dssp             ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred             cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence            5689999999999999999999999999999999998          7788999999888876543 2478999999999


Q ss_pred             CCCCCcc--c-------------------CHHHHHHHHHH----------------cCCCEEEEecCCCCCHHHHHHHHH
Q 028792          124 DLTANKV--V-------------------SYETAKAFADE----------------IGIPFMETSAKSATNVEQAFMAMA  166 (203)
Q Consensus       124 D~~~~~~--~-------------------~~~~~~~~~~~----------------~~~~~~~~Sa~~~~gi~~~~~~l~  166 (203)
                      |+.+.+.  .                   +.+++..++..                ..+.+++|||+++.||+++|.++.
T Consensus       261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~  340 (354)
T 2xtz_A          261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD  340 (354)
T ss_dssp             HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence            9843211  1                   14556666432                123468999999999999999999


Q ss_pred             HHHHHHh
Q 028792          167 ASIKNRM  173 (203)
Q Consensus       167 ~~~~~~~  173 (203)
                      +.+.+..
T Consensus       341 ~~I~~~~  347 (354)
T 2xtz_A          341 ETLRRRN  347 (354)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9887654

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.85  E-value=4.8e-21  Score=150.68  Aligned_cols=147  Identities=7%  Similarity=0.076  Sum_probs=106.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEEe
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYD   89 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   89 (203)
                      +|+++|.+++|||||+++|+        ...++.+.....+..++  ..+.+||+||+.+|.......+..+|++|+|+|
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~--------~~giTi~~~~~~~~~~~--~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd   92 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLG--------KKGTSSDITMYNNDKEG--RNMVFVDAHSYPKTLKSLITALNISDIAVLCIP   92 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTS--------EEEEESSSEEEEECSSS--SEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred             EEEEECCCCCCHHHHHHHHH--------hCCEEEEeeEEEEecCC--eEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence            99999999999999999998        12222233334444444  569999999999987777777899999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhcCCCCcE-EEEEe-CCCCCCCcccCH--HHHHHHHHHcC---CCEEE--EecCC---CCC
Q 028792           90 VTDQESFNNVKQWLNEIDRYASENVNK-LLVGN-KCDLTANKVVSY--ETAKAFADEIG---IPFME--TSAKS---ATN  157 (203)
Q Consensus        90 ~~~~~s~~~~~~~~~~l~~~~~~~~p~-iiv~n-K~D~~~~~~~~~--~~~~~~~~~~~---~~~~~--~Sa~~---~~g  157 (203)
                       ++ ..+....+++..+...   +.|. ++++| |+|+ +......  +++.+++...+   +++++  +||++   ++|
T Consensus        93 -~~-g~~~qt~e~~~~~~~~---~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~g  166 (370)
T 2elf_A           93 -PQ-GLDAHTGECIIALDLL---GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEG  166 (370)
T ss_dssp             -TT-CCCHHHHHHHHHHHHT---TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTT
T ss_pred             -CC-CCcHHHHHHHHHHHHc---CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCC
Confidence             53 3334445555444433   5676 88899 9998 4322221  44555554443   68999  99999   999


Q ss_pred             HHHHHHHHHHHHHHH
Q 028792          158 VEQAFMAMAASIKNR  172 (203)
Q Consensus       158 i~~~~~~l~~~~~~~  172 (203)
                      ++++++.|.+.+...
T Consensus       167 i~~L~~~l~~~~~~~  181 (370)
T 2elf_A          167 VDELKARINEVAEKI  181 (370)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcccc
Confidence            999999999887643

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.85  E-value=1.6e-20  Score=155.38  Aligned_cols=161  Identities=15%  Similarity=0.122  Sum_probs=107.1

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEEC----------------CeEEEEEEEeCCChhh
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQD----------------GKTIKLQIWDTAGQER   69 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~i~D~~g~~~   69 (203)
                      .+.++|+++|++++|||||+++|.+...........+.+.....+..+                .....+++|||||+..
T Consensus         3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~   82 (594)
T 1g7s_A            3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA   82 (594)
T ss_dssp             ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence            456899999999999999999998654322111011111111111110                0112589999999999


Q ss_pred             hchhhhccccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccC-------------H
Q 028792           70 FRTITSSYYRGAHGIIVVYDVTD---QESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVS-------------Y  133 (203)
Q Consensus        70 ~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~-------------~  133 (203)
                      |...+...+..+|++|+|+|+++   ++++..+..    +..   .+.|+++++||+|+.......             .
T Consensus        83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~---~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~  155 (594)
T 1g7s_A           83 FTTLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDI  155 (594)
T ss_dssp             CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCH
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHH---cCCeEEEEecccccccccccccCCchHHHHHHhHH
Confidence            99988888999999999999998   666544432    222   368999999999986422100             0


Q ss_pred             ---H-------HHHHHHHHc---------------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 028792          134 ---E-------TAKAFADEI---------------GIPFMETSAKSATNVEQAFMAMAASIKNRM  173 (203)
Q Consensus       134 ---~-------~~~~~~~~~---------------~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~  173 (203)
                         +       +........               .++++++||++|.|+++++++|...+....
T Consensus       156 ~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~~  220 (594)
T 1g7s_A          156 QVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYL  220 (594)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccccc
Confidence               0       111111111               137999999999999999999998776443

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.84  E-value=7.7e-21  Score=152.81  Aligned_cols=155  Identities=21%  Similarity=0.189  Sum_probs=104.4

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhcCCC--CCC----------Cc---------------------cccceeeEEEEEE
Q 028792            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSY--LES----------YI---------------------STIGVDFKIRTVE   51 (203)
Q Consensus         5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~--~~~----------~~---------------------~~~~~~~~~~~~~   51 (203)
                      ....++|+++|.+++|||||+++|+....  ...          ..                     ..++.+.....+.
T Consensus        21 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~  100 (434)
T 1zun_B           21 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS  100 (434)
T ss_dssp             SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred             cCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee
Confidence            34569999999999999999999985431  000          00                     1112222222333


Q ss_pred             ECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc
Q 028792           52 QDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVV  131 (203)
Q Consensus        52 ~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~  131 (203)
                      .++  ..+.+||+||+.+|...+...+..+|++|+|+|+++... .....++..+...  ...|+++++||+|+.+....
T Consensus       101 ~~~--~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~-~qt~~~l~~~~~~--~~~~iIvviNK~Dl~~~~~~  175 (434)
T 1zun_B          101 TAK--RKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ-TQTRRHSYIASLL--GIKHIVVAINKMDLNGFDER  175 (434)
T ss_dssp             CSS--EEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC-HHHHHHHHHHHHT--TCCEEEEEEECTTTTTSCHH
T ss_pred             cCC--ceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc--CCCeEEEEEEcCcCCcccHH
Confidence            333  678999999999998888888999999999999987542 2223333333322  12368999999999763211


Q ss_pred             ----CHHHHHHHHHHcC-----CCEEEEecCCCCCHHHHHHH
Q 028792          132 ----SYETAKAFADEIG-----IPFMETSAKSATNVEQAFMA  164 (203)
Q Consensus       132 ----~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~~~~~  164 (203)
                          ..++..++++.++     ++++++||++|.|+++++..
T Consensus       176 ~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~~  217 (434)
T 1zun_B          176 VFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSER  217 (434)
T ss_dssp             HHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCTT
T ss_pred             HHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccccccc
Confidence                1244556666666     67999999999999986543

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.84  E-value=9.7e-22  Score=158.04  Aligned_cols=154  Identities=19%  Similarity=0.189  Sum_probs=103.3

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcC--CCCCC-----------------------------CccccceeeEEEEEEECCe
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFADD--SYLES-----------------------------YISTIGVDFKIRTVEQDGK   55 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~   55 (203)
                      ..++|+++|++++|||||+++|+..  .+...                             ..+.++.+.....+...+ 
T Consensus         5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~-   83 (435)
T 1jny_A            5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK-   83 (435)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS-
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC-
Confidence            5689999999999999999999864  22211                             012223233333333333 


Q ss_pred             EEEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHH----HHhhcCCC-CcEEEEEeCCCCCCCc-
Q 028792           56 TIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNE----IDRYASEN-VNKLLVGNKCDLTANK-  129 (203)
Q Consensus        56 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~----l~~~~~~~-~p~iiv~nK~D~~~~~-  129 (203)
                       ..+.+||+||+.+|...+...+..+|++|+|+|+++ .+|+.+..|...    +......+ .|+++++||+|+.+.. 
T Consensus        84 -~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~  161 (435)
T 1jny_A           84 -YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPY  161 (435)
T ss_dssp             -CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTT
T ss_pred             -eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccc
Confidence             679999999999998888889999999999999998 566644322211    11111123 4689999999987621 


Q ss_pred             -----ccCHHHHHHHHHHcC-----CCEEEEecCCCCCHHHHHH
Q 028792          130 -----VVSYETAKAFADEIG-----IPFMETSAKSATNVEQAFM  163 (203)
Q Consensus       130 -----~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~~~~  163 (203)
                           ....+++.+++...+     ++++++||++|+|+.+++.
T Consensus       162 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~  205 (435)
T 1jny_A          162 DEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE  205 (435)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred             cHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence                 112345666766665     6799999999999987654

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.84  E-value=5e-21  Score=159.17  Aligned_cols=154  Identities=19%  Similarity=0.164  Sum_probs=103.1

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-------------------------------ccccceeeEEEEEEECCe
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESY-------------------------------ISTIGVDFKIRTVEQDGK   55 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~   55 (203)
                      ..++|+++|.+++|||||+++|++.......                               .+.++.+.....+...+ 
T Consensus       166 ~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~-  244 (611)
T 3izq_1          166 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR-  244 (611)
T ss_dssp             CCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS-
T ss_pred             CceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC-
Confidence            4689999999999999999999865321111                               12233333334444444 


Q ss_pred             EEEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChh---hHHHHHHHHHHHHhhcCCC-CcEEEEEeCCCCCCCccc
Q 028792           56 TIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQE---SFNNVKQWLNEIDRYASEN-VNKLLVGNKCDLTANKVV  131 (203)
Q Consensus        56 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~l~~~~~~~-~p~iiv~nK~D~~~~~~~  131 (203)
                       ..+.+|||||+.++.......+..+|++|+|+|+++..   ++....++...+......+ .|+++|+||+|+.+....
T Consensus       245 -~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~~  323 (611)
T 3izq_1          245 -ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQ  323 (611)
T ss_dssp             -CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCHH
T ss_pred             -ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhHH
Confidence             67899999999999888888999999999999998742   1111112222222222223 458999999999764322


Q ss_pred             CHH----HHHHHHHHcC-----CCEEEEecCCCCCHHHHH
Q 028792          132 SYE----TAKAFADEIG-----IPFMETSAKSATNVEQAF  162 (203)
Q Consensus       132 ~~~----~~~~~~~~~~-----~~~~~~Sa~~~~gi~~~~  162 (203)
                      ..+    ++..++...+     ++++++||++|.|+.++.
T Consensus       324 ~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~  363 (611)
T 3izq_1          324 RFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIE  363 (611)
T ss_dssp             HHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSCT
T ss_pred             HHHHHHHHHHHHHHhhcccccCccEEeeecccCCCccccC
Confidence            222    3334444443     589999999999998763

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.84  E-value=7.5e-21  Score=151.66  Aligned_cols=149  Identities=15%  Similarity=0.139  Sum_probs=101.0

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhcC--------CCCCC--C-----ccccceeeEEEEEEECCeEEEEEEEeCCChhh
Q 028792            5 YDYLFKLLLIGDSGVGKSCLLLRFADD--------SYLES--Y-----ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER   69 (203)
Q Consensus         5 ~~~~~~i~i~G~~~~GKSsli~~l~~~--------~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~   69 (203)
                      ....++|+++|++++|||||+++|.+.        .+...  .     ....+.++......++.....+.+||+||+.+
T Consensus         8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~   87 (405)
T 2c78_A            8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD   87 (405)
T ss_dssp             -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred             CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence            345699999999999999999999862        11110  0     00112222222333333336789999999999


Q ss_pred             hchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCccc---CHHHHHHHHHHcC-
Q 028792           70 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVN-KLLVGNKCDLTANKVV---SYETAKAFADEIG-  144 (203)
Q Consensus        70 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~iiv~nK~D~~~~~~~---~~~~~~~~~~~~~-  144 (203)
                      |.......+..+|++|+|+|+++... .....++..+...   +.| +++++||+|+......   ..+++.+++...+ 
T Consensus        88 f~~~~~~~~~~aD~~ilVvda~~g~~-~qt~~~l~~~~~~---~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~  163 (405)
T 2c78_A           88 YIKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV---GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEF  163 (405)
T ss_dssp             GHHHHHHHHTTCSSEEEEEETTTCCC-HHHHHHHHHHHHT---TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhcc
Confidence            88888888899999999999987643 2334444444332   577 8899999998753211   1234556666655 


Q ss_pred             ----CCEEEEecCCCCC
Q 028792          145 ----IPFMETSAKSATN  157 (203)
Q Consensus       145 ----~~~~~~Sa~~~~g  157 (203)
                          ++++++||++|.|
T Consensus       164 ~~~~~~~i~~SA~~g~~  180 (405)
T 2c78_A          164 PGDEVPVIRGSALLALE  180 (405)
T ss_dssp             CTTTSCEEECCHHHHHH
T ss_pred             cccCCCEEEccHHHhhh
Confidence                6899999999987

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.84  E-value=1.6e-21  Score=157.96  Aligned_cols=155  Identities=17%  Similarity=0.146  Sum_probs=92.4

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhc--CCCCC-----------------------------CCccccceeeEEEEEEECC
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFAD--DSYLE-----------------------------SYISTIGVDFKIRTVEQDG   54 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~   54 (203)
                      ...++|+++|..++|||||+++|+.  +.+..                             +....++.+.....+..++
T Consensus        41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~  120 (467)
T 1r5b_A           41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH  120 (467)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred             CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence            3568999999999999999999974  21110                             0011222222223444444


Q ss_pred             eEEEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChh---hHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCc-
Q 028792           55 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQE---SFNNVKQWLNEIDRYASENVN-KLLVGNKCDLTANK-  129 (203)
Q Consensus        55 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~l~~~~~~~~p-~iiv~nK~D~~~~~-  129 (203)
                        ..+.+||+||+..|.......+..+|++|+|+|+++..   +|+...++...+......+.| +++++||+|+.... 
T Consensus       121 --~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~  198 (467)
T 1r5b_A          121 --RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQW  198 (467)
T ss_dssp             --EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSS
T ss_pred             --eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccc
Confidence              67899999999999888888889999999999999752   333222333333222223576 89999999985421 


Q ss_pred             -----ccCHHHHHHHHHHc-------CCCEEEEecCCCCCHHHHH
Q 028792          130 -----VVSYETAKAFADEI-------GIPFMETSAKSATNVEQAF  162 (203)
Q Consensus       130 -----~~~~~~~~~~~~~~-------~~~~~~~Sa~~~~gi~~~~  162 (203)
                           ....+++.+++...       +++++++||++|.|+.+++
T Consensus       199 ~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~  243 (467)
T 1r5b_A          199 SEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  243 (467)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             cHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence                 11123455666655       3569999999999998876

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.84  E-value=2.7e-20  Score=148.00  Aligned_cols=158  Identities=18%  Similarity=0.157  Sum_probs=105.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCC-------CCCC-------CccccceeeEEEEEEECCeEEEEEEEeCCChhhhchh
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFADDS-------YLES-------YISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI   73 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~~~-------~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~   73 (203)
                      .++|+++|++++|||||+++|.+..       +...       .....+.+.......+......+.+||+||+.+|...
T Consensus         3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~   82 (397)
T 1d2e_A            3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKN   82 (397)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHH
T ss_pred             eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHHH
Confidence            5899999999999999999998631       1100       0001122222222333333367899999999998888


Q ss_pred             hhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCccc---CHHHHHHHHHHcC-----
Q 028792           74 TSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVN-KLLVGNKCDLTANKVV---SYETAKAFADEIG-----  144 (203)
Q Consensus        74 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~iiv~nK~D~~~~~~~---~~~~~~~~~~~~~-----  144 (203)
                      ....+..+|++|+|+|+++...... ..++..+..   .+.| +++++||+|+.+....   ..+++.+++...+     
T Consensus        83 ~~~~~~~aD~~ilVvda~~g~~~qt-~e~l~~~~~---~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~  158 (397)
T 1d2e_A           83 MITGTAPLDGCILVVAANDGPMPQT-REHLLLARQ---IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEE  158 (397)
T ss_dssp             HHHTSSCCSEEEEEEETTTCSCHHH-HHHHHHHHH---TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTT
T ss_pred             HHhhHhhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCccc
Confidence            8888999999999999998543222 222233332   2577 6899999998753211   1235566666665     


Q ss_pred             CCEEEEecCCCCC----------HHHHHHHHHHHH
Q 028792          145 IPFMETSAKSATN----------VEQAFMAMAASI  169 (203)
Q Consensus       145 ~~~~~~Sa~~~~g----------i~~~~~~l~~~~  169 (203)
                      ++++++||++|.|          +.++++.|.+.+
T Consensus       159 ~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~  193 (397)
T 1d2e_A          159 TPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI  193 (397)
T ss_dssp             SCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred             CcEEEeehhhcccccCCCccCCcHHHHHHHHHHhC
Confidence            5899999999764          677777766544

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.84  E-value=9.1e-23  Score=165.20  Aligned_cols=153  Identities=18%  Similarity=0.242  Sum_probs=107.1

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      ++..+|+++|++++|||||+++|....+.....++++.+.....+..++  ..+++|||||+..|..++...+..+|+++
T Consensus         2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aI   79 (501)
T 1zo1_I            2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVV   79 (501)
T ss_dssp             CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEE
Confidence            4678999999999999999999987554433333333333333344444  46889999999999999888999999999


Q ss_pred             EEEeCCC---hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc--ccCHH--HHHHHHHHcC--CCEEEEecCCCC
Q 028792           86 VVYDVTD---QESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANK--VVSYE--TAKAFADEIG--IPFMETSAKSAT  156 (203)
Q Consensus        86 ~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~--~~~~~--~~~~~~~~~~--~~~~~~Sa~~~~  156 (203)
                      +|+|+++   +++.+.+    ..+.   ..+.|+++++||+|+....  .+..+  +...+...++  ++++++||++|.
T Consensus        80 LVVda~~g~~~qT~e~l----~~~~---~~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~  152 (501)
T 1zo1_I           80 LVVAADDGVMPQTIEAI----QHAK---AAQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGT  152 (501)
T ss_dssp             EEEETTTBSCTTTHHHH----HHHH---HTTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCT
T ss_pred             EEeecccCccHHHHHHH----HHHH---hcCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeecc
Confidence            9999987   3443322    1122   2368999999999986431  11100  0000112222  689999999999


Q ss_pred             CHHHHHHHHHH
Q 028792          157 NVEQAFMAMAA  167 (203)
Q Consensus       157 gi~~~~~~l~~  167 (203)
                      |++++|++|..
T Consensus       153 gI~eLle~I~~  163 (501)
T 1zo1_I          153 GIDELLDAILL  163 (501)
T ss_dssp             TCTTHHHHTTT
T ss_pred             Ccchhhhhhhh
Confidence            99999999864

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.82  E-value=6.8e-20  Score=141.62  Aligned_cols=123  Identities=18%  Similarity=0.192  Sum_probs=97.5

Q ss_pred             EEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEEeCC----------ChhhHHHHHHHHHHHHhhcC-CCCc
Q 028792           47 IRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVT----------DQESFNNVKQWLNEIDRYAS-ENVN  115 (203)
Q Consensus        47 ~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~l~~~~~-~~~p  115 (203)
                      ...+..++  +.+++||++|+++++..|..++.+++++|||+|++          +.+++.+...|+..+..... .+.|
T Consensus       153 ~~~~~~~~--v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~p  230 (340)
T 4fid_A          153 EYDFVVKD--IPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAV  230 (340)
T ss_dssp             EEEEESSS--CEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSE
T ss_pred             EEEEEeee--eeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCe
Confidence            33444444  78999999999999999999999999999999998          67888888888887765433 5789


Q ss_pred             EEEEEeCCCCCCCc---------------ccCHHHHHHHHHH---------------------------cCCCEEEEecC
Q 028792          116 KLLVGNKCDLTANK---------------VVSYETAKAFADE---------------------------IGIPFMETSAK  153 (203)
Q Consensus       116 ~iiv~nK~D~~~~~---------------~~~~~~~~~~~~~---------------------------~~~~~~~~Sa~  153 (203)
                      +++++||+|+...+               ..+.+++.+++..                           ..+.+++|||+
T Consensus       231 iiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~  310 (340)
T 4fid_A          231 KLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNAT  310 (340)
T ss_dssp             EEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTT
T ss_pred             EEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEee
Confidence            99999999985321               1245555554432                           13678999999


Q ss_pred             CCCCHHHHHHHHHHHHHH
Q 028792          154 SATNVEQAFMAMAASIKN  171 (203)
Q Consensus       154 ~~~gi~~~~~~l~~~~~~  171 (203)
                      ++.+|+.+|..+.+.+.+
T Consensus       311 dt~nv~~vF~~v~~~Il~  328 (340)
T 4fid_A          311 DGSNIKRVFMLAVDVIMK  328 (340)
T ss_dssp             CHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHH
Confidence            999999999999999887

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.82  E-value=6e-21  Score=154.19  Aligned_cols=151  Identities=17%  Similarity=0.167  Sum_probs=102.3

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcC--CCCCC-----------------------------CccccceeeEEEEEEECC
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADD--SYLES-----------------------------YISTIGVDFKIRTVEQDG   54 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~~   54 (203)
                      ...++|+++|.+++|||||+++|++.  .+...                             ....++.+.....+..++
T Consensus         5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~   84 (458)
T 1f60_A            5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK   84 (458)
T ss_dssp             CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred             CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC
Confidence            45799999999999999999999853  11110                             011223333333444444


Q ss_pred             eEEEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChh---hHH---HHHHHHHHHHhhcCCCCc-EEEEEeCCCCCC
Q 028792           55 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQE---SFN---NVKQWLNEIDRYASENVN-KLLVGNKCDLTA  127 (203)
Q Consensus        55 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~l~~~~~~~~p-~iiv~nK~D~~~  127 (203)
                        ..+.+||+||+.+|.......+..+|++|+|+|+++..   +|+   .....+..+..   .+.| +++++||+|+.+
T Consensus        85 --~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~---~~v~~iivviNK~Dl~~  159 (458)
T 1f60_A           85 --YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT---LGVRQLIVAVNKMDSVK  159 (458)
T ss_dssp             --EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH---TTCCEEEEEEECGGGGT
T ss_pred             --ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH---cCCCeEEEEEEcccccc
Confidence              67999999999999888888899999999999998753   221   22222222222   2455 899999999874


Q ss_pred             Ccc----cCHHHHHHHHHHcC-----CCEEEEecCCCCCHHHH
Q 028792          128 NKV----VSYETAKAFADEIG-----IPFMETSAKSATNVEQA  161 (203)
Q Consensus       128 ~~~----~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~~  161 (203)
                      ...    ...+++.+++...+     ++++++||++|+|+.++
T Consensus       160 ~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~  202 (458)
T 1f60_A          160 WDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA  202 (458)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred             CCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence            211    11234555656555     68999999999999754

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.81  E-value=1.2e-19  Score=132.07  Aligned_cols=157  Identities=16%  Similarity=0.159  Sum_probs=97.6

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhh----------hchhhhc
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER----------FRTITSS   76 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~~~~   76 (203)
                      .-.+|+++|++|+|||||+++|.+..+.....++.+.......+..++   .+.+||+||...          +......
T Consensus        25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~  101 (210)
T 1pui_A           25 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALGE  101 (210)
T ss_dssp             CSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHHH
Confidence            457899999999999999999998764333334444333333333333   467999999632          2222223


Q ss_pred             cc---cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc--CHHHHHHHHHHcC--CCEEE
Q 028792           77 YY---RGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVV--SYETAKAFADEIG--IPFME  149 (203)
Q Consensus        77 ~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~--~~~~~~~~~~~~~--~~~~~  149 (203)
                      ++   ..++++++++|++++.+.... .....+.   ..+.|+++++||+|+.+....  ..+.+..++...+  +.+++
T Consensus       102 ~~~~~~~~~~~~~v~d~~~~~~~~~~-~~~~~~~---~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (210)
T 1pui_A          102 YLEKRQSLQGLVVLMDIRHPLKDLDQ-QMIEWAV---DSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVET  177 (210)
T ss_dssp             HHHHCTTEEEEEEEEETTSCCCHHHH-HHHHHHH---HTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEE
T ss_pred             HHHhhhcccEEEEEEECCCCCchhHH-HHHHHHH---HcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEE
Confidence            33   568999999999876554321 1111121   136899999999998653221  1234455555444  56889


Q ss_pred             EecCCCCCHHHHHHHHHHHHH
Q 028792          150 TSAKSATNVEQAFMAMAASIK  170 (203)
Q Consensus       150 ~Sa~~~~gi~~~~~~l~~~~~  170 (203)
                      +||+++.|+++++++|.+.+.
T Consensus       178 ~Sal~~~~~~~l~~~l~~~~~  198 (210)
T 1pui_A          178 FSSLKKQGVDKLRQKLDTWFS  198 (210)
T ss_dssp             CBTTTTBSHHHHHHHHHHHHC
T ss_pred             EeecCCCCHHHHHHHHHHHHh
Confidence            999999999999999988653

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.81  E-value=2.3e-20  Score=143.04  Aligned_cols=161  Identities=17%  Similarity=0.171  Sum_probs=101.1

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC------ccc----------------------ccee------------
Q 028792            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESY------IST----------------------IGVD------------   44 (203)
Q Consensus         5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~------~~~----------------------~~~~------------   44 (203)
                      ....++|+|+|.+|+|||||+++|++..+.+..      .++                      .+.+            
T Consensus        23 ~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~  102 (299)
T 2aka_B           23 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR  102 (299)
T ss_dssp             TCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHH
Confidence            346789999999999999999999988764221      121                      0000            


Q ss_pred             -------e----EEEEEEECCeEEEEEEEeCCChh-------------hhchhhhccccCCcEEE-EEEeCCChhhHHHH
Q 028792           45 -------F----KIRTVEQDGKTIKLQIWDTAGQE-------------RFRTITSSYYRGAHGII-VVYDVTDQESFNNV   99 (203)
Q Consensus        45 -------~----~~~~~~~~~~~~~~~i~D~~g~~-------------~~~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~   99 (203)
                             +    ....+... ....+.+|||||..             .+......++..++.++ +|+|+++..+....
T Consensus       103 i~g~~~gi~~~~~~~~~~~~-~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~  181 (299)
T 2aka_B          103 VTGTNKGISPVPINLRVYSP-HVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA  181 (299)
T ss_dssp             HCSSTTCCCSCCEEEEEEET-TCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHH
T ss_pred             hcccCCCccccceEEEEeCC-CCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHH
Confidence                   0    00000001 02568999999953             33445566777887666 79999875443332


Q ss_pred             HHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH--cC-CCEEEEecCCCCCHHHHHHHHHHHH
Q 028792          100 KQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADE--IG-IPFMETSAKSATNVEQAFMAMAASI  169 (203)
Q Consensus       100 ~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~--~~-~~~~~~Sa~~~~gi~~~~~~l~~~~  169 (203)
                      ..++..+   ...+.|+++|+||+|+.+......+.+......  .+ .+++++||++|.|+++++++|.+..
T Consensus       182 ~~~~~~~---~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~  251 (299)
T 2aka_B          182 LKIAKEV---DPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAER  251 (299)
T ss_dssp             HHHHHHH---CTTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHH
T ss_pred             HHHHHHh---CCCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHH
Confidence            2333333   334789999999999976543222222210001  12 3678999999999999999998743

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.80  E-value=3.5e-19  Score=154.36  Aligned_cols=160  Identities=16%  Similarity=0.135  Sum_probs=104.8

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhcCC-------CCC-------CCccccceeeEEEEEEECCeEEEEEEEeCCChhhh
Q 028792            5 YDYLFKLLLIGDSGVGKSCLLLRFADDS-------YLE-------SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF   70 (203)
Q Consensus         5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~-------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~   70 (203)
                      ....++|+++|++++|||||+++|.+..       +..       ....+.+.++....+.++.....+.+|||||+.+|
T Consensus       293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF  372 (1289)
T 3avx_A          293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY  372 (1289)
T ss_dssp             CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred             cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence            3456999999999999999999998631       000       00112222222222233333467899999999999


Q ss_pred             chhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCccc---CHHHHHHHHHHcC--
Q 028792           71 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVN-KLLVGNKCDLTANKVV---SYETAKAFADEIG--  144 (203)
Q Consensus        71 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~iiv~nK~D~~~~~~~---~~~~~~~~~~~~~--  144 (203)
                      .......+..+|++|+|+|+++.... ....++..+...   +.| +++++||+|+.+....   ..+++.+++...+  
T Consensus       373 ~~~mi~gas~AD~aILVVDAtdGv~~-QTrEhL~ll~~l---gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~  448 (1289)
T 3avx_A          373 VKNMITGAAQMDGAILVVAATDGPMP-QTREHILLGRQV---GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFP  448 (1289)
T ss_dssp             HHHHHHTSCCCSEEEEEEETTTCSCT-THHHHHHHHHHH---TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHhhCCEEEEEEcCCccCcH-HHHHHHHHHHHc---CCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcccc
Confidence            88888889999999999999875322 223343333332   577 7899999999753221   1245566666665  


Q ss_pred             ---CCEEEEecCCC--------CCHHHHHHHHHHH
Q 028792          145 ---IPFMETSAKSA--------TNVEQAFMAMAAS  168 (203)
Q Consensus       145 ---~~~~~~Sa~~~--------~gi~~~~~~l~~~  168 (203)
                         ++++++||++|        .|+.++++.|.+.
T Consensus       449 ~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~  483 (1289)
T 3avx_A          449 GDDTPIVRGSALKALEGDAEWEAKILELAGFLDSY  483 (1289)
T ss_dssp             TTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred             ccceeEEEEEeccCCCCCccccccchhhHhHHhhh
Confidence               68999999999        3566666666553

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.80  E-value=6.5e-19  Score=140.01  Aligned_cols=161  Identities=16%  Similarity=0.168  Sum_probs=110.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhh----hchhhhc---cccCCc
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER----FRTITSS---YYRGAH   82 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~---~~~~~d   82 (203)
                      .|+++|++|||||||+++|.+........+..+.......+..++ ...+.+||+||...    +..+...   .+..++
T Consensus       159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~  237 (416)
T 1udx_A          159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIARTR  237 (416)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence            478999999999999999987643211112222223333444443 24688999999632    1112222   245799


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHH
Q 028792           83 GIIVVYDVTDQESFNNVKQWLNEIDRYAS--ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQ  160 (203)
Q Consensus        83 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  160 (203)
                      .+++++|++ ...+..+..+...+..+..  ...|.++++||+|+...  ...+.+.+.....+++++.+||++++|+++
T Consensus       238 ~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~--~~~~~l~~~l~~~g~~vi~iSA~~g~gi~e  314 (416)
T 1udx_A          238 VLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE--EAVKALADALAREGLAVLPVSALTGAGLPA  314 (416)
T ss_dssp             EEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH--HHHHHHHHHHHTTTSCEEECCTTTCTTHHH
T ss_pred             hhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH--HHHHHHHHHHHhcCCeEEEEECCCccCHHH
Confidence            999999998 5566777777666655432  24789999999998653  223444555555678999999999999999


Q ss_pred             HHHHHHHHHHHHhc
Q 028792          161 AFMAMAASIKNRMA  174 (203)
Q Consensus       161 ~~~~l~~~~~~~~~  174 (203)
                      ++.+|.+.+.+...
T Consensus       315 L~~~i~~~l~~~~~  328 (416)
T 1udx_A          315 LKEALHALVRSTPP  328 (416)
T ss_dssp             HHHHHHHHHHTSCC
T ss_pred             HHHHHHHHHHhccc
Confidence            99999999876543

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.79  E-value=1.8e-18  Score=130.26  Aligned_cols=124  Identities=19%  Similarity=0.236  Sum_probs=84.3

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCC-CCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccc------
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLE-SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYY------   78 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~------   78 (203)
                      ...++|+++|.+|+|||||+++|++..... ...+..+.......+..++  ..+.+|||||+..+......++      
T Consensus        34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~  111 (262)
T 3def_A           34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGF  111 (262)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHH
Confidence            457999999999999999999999877532 2223333344445555666  6899999999876544333322      


Q ss_pred             ---cCCcEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCC--CcEEEEEeCCCCCCCcccC
Q 028792           79 ---RGAHGIIVVYDVTDQESFNNV-KQWLNEIDRYASEN--VNKLLVGNKCDLTANKVVS  132 (203)
Q Consensus        79 ---~~~d~~i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~--~p~iiv~nK~D~~~~~~~~  132 (203)
                         ..+|++++|++++... +... ..|+..+......+  .|+++|+||+|+...+...
T Consensus       112 l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~  170 (262)
T 3def_A          112 LVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELS  170 (262)
T ss_dssp             TTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCC
T ss_pred             HhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCcc
Confidence               2789999999987644 3332 35666665543322  4899999999986544433

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.79  E-value=4.7e-21  Score=158.90  Aligned_cols=149  Identities=21%  Similarity=0.223  Sum_probs=80.7

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCC-------------------------------CCCCCccccceeeEEEEEEECC
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDS-------------------------------YLESYISTIGVDFKIRTVEQDG   54 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~   54 (203)
                      ...++|+++|.+++|||||+++|+...                               ......+.++.+.....+..++
T Consensus       175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~  254 (592)
T 3mca_A          175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDK  254 (592)
T ss_dssp             CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCC
Confidence            456899999999999999999996321                               0111122333333333444433


Q ss_pred             eEEEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChh---hH---HHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCC
Q 028792           55 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQE---SF---NNVKQWLNEIDRYASENVN-KLLVGNKCDLTA  127 (203)
Q Consensus        55 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~l~~~~~~~~p-~iiv~nK~D~~~  127 (203)
                        ..+.+|||||+..|.......+..+|++|+|+|+++..   .+   ......+..+..   .+.| +|+|+||+|+.+
T Consensus       255 --~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~---lgip~iIvviNKiDl~~  329 (592)
T 3mca_A          255 --KIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA---LGISEIVVSVNKLDLMS  329 (592)
T ss_dssp             ------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH---SSCCCEEEEEECGGGGT
T ss_pred             --eEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH---cCCCeEEEEEecccccc
Confidence              67899999999999888888889999999999998532   11   011222222222   2455 899999999875


Q ss_pred             CcccC----HHHHHHHH-HHcCC-----CEEEEecCCCCCHH
Q 028792          128 NKVVS----YETAKAFA-DEIGI-----PFMETSAKSATNVE  159 (203)
Q Consensus       128 ~~~~~----~~~~~~~~-~~~~~-----~~~~~Sa~~~~gi~  159 (203)
                      .....    .+++..+. ...+.     +++++||++|.|+.
T Consensus       330 ~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~  371 (592)
T 3mca_A          330 WSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI  371 (592)
T ss_dssp             TCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred             ccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence            32211    12333444 33443     69999999999998

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.79  E-value=1.5e-18  Score=146.43  Aligned_cols=163  Identities=18%  Similarity=0.242  Sum_probs=107.1

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCC-Ccccccee------------e----------------------------
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFADDSYLES-YISTIGVD------------F----------------------------   45 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~------------~----------------------------   45 (203)
                      ..++|+|+|.+|+|||||+|+|++....+. ..+++...            .                            
T Consensus        68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~  147 (695)
T 2j69_A           68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK  147 (695)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence            468999999999999999999998775432 22322100            0                            


Q ss_pred             -------------EEEEEEECCeE--EEEEEEeCCChhh---hchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHH
Q 028792           46 -------------KIRTVEQDGKT--IKLQIWDTAGQER---FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEID  107 (203)
Q Consensus        46 -------------~~~~~~~~~~~--~~~~i~D~~g~~~---~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~  107 (203)
                                   ....+..+...  ..+.+|||||...   .......++..+|+++||+|++++.+..+...|...+.
T Consensus       148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~  227 (695)
T 2j69_A          148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIK  227 (695)
T ss_dssp             HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTT
T ss_pred             HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHH
Confidence                         00001111000  2488999999654   33455667899999999999998877766655544432


Q ss_pred             hhcCCCCcEEEEEeCCCCCCCcccCHH----------HHHH-----HHHH--------cCCCEEEEecC-----------
Q 028792          108 RYASENVNKLLVGNKCDLTANKVVSYE----------TAKA-----FADE--------IGIPFMETSAK-----------  153 (203)
Q Consensus       108 ~~~~~~~p~iiv~nK~D~~~~~~~~~~----------~~~~-----~~~~--------~~~~~~~~Sa~-----------  153 (203)
                         ..+.|+++|+||+|+......+.+          .+..     +...        ...+++++||+           
T Consensus       228 ---~~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~  304 (695)
T 2j69_A          228 ---GRGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQ  304 (695)
T ss_dssp             ---TSCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTT
T ss_pred             ---hhCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCch
Confidence               236789999999998644311110          1111     1111        12479999999           


Q ss_pred             ---CCCCHHHHHHHHHHHHHHH
Q 028792          154 ---SATNVEQAFMAMAASIKNR  172 (203)
Q Consensus       154 ---~~~gi~~~~~~l~~~~~~~  172 (203)
                         ++.|+++++.+|.+.+...
T Consensus       305 ~~~~~~Gi~~L~~~L~~~l~~~  326 (695)
T 2j69_A          305 ADLDGTGFPKFMDSLNTFLTRE  326 (695)
T ss_dssp             CCCTTSSHHHHHHHHHHHHHHT
T ss_pred             hhhhccCHHHHHHHHHHHHHHh
Confidence               9999999999998877653

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.79  E-value=1.5e-19  Score=142.18  Aligned_cols=161  Identities=15%  Similarity=0.187  Sum_probs=106.4

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEE---------------------------------------
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKI---------------------------------------   47 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~---------------------------------------   47 (203)
                      ...+|+|+|++|||||||+++|.+..+.+......+.....                                       
T Consensus        33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~  112 (360)
T 3t34_A           33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD  112 (360)
T ss_dssp             CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence            45699999999999999999999977633222111100000                                       


Q ss_pred             -------------EEEE-ECCeEEEEEEEeCCChhhh-------------chhhhccccCCcEEEEEEeCCChhhHHHHH
Q 028792           48 -------------RTVE-QDGKTIKLQIWDTAGQERF-------------RTITSSYYRGAHGIIVVYDVTDQESFNNVK  100 (203)
Q Consensus        48 -------------~~~~-~~~~~~~~~i~D~~g~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~  100 (203)
                                   ..+. .......+.+||+||..++             ......++..+|++|+|+|..+.+...  .
T Consensus       113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~  190 (360)
T 3t34_A          113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--S  190 (360)
T ss_dssp             HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--C
T ss_pred             HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--H
Confidence                         0000 0011135889999997664             445667789999999999876433211  3


Q ss_pred             HHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHHHH
Q 028792          101 QWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI  169 (203)
Q Consensus       101 ~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~  169 (203)
                      .|+..+......+.|+++|+||+|+.+......+....+...++.+|++++++.+.++++.+.++....
T Consensus       191 ~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~~~~~  259 (360)
T 3t34_A          191 DAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMIAARK  259 (360)
T ss_dssp             HHHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHHHHHH
T ss_pred             HHHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCHHHHHH
Confidence            344445555556789999999999986555444444444445678899999999998887766654433

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.78  E-value=3.2e-18  Score=144.38  Aligned_cols=121  Identities=20%  Similarity=0.221  Sum_probs=85.6

Q ss_pred             CCCCceeeEEEEEcCCCCcHHHHHHHHhcC--CC------CC----------CCccccceeeEEEEEEECCeEEEEEEEe
Q 028792            2 NNEYDYLFKLLLIGDSGVGKSCLLLRFADD--SY------LE----------SYISTIGVDFKIRTVEQDGKTIKLQIWD   63 (203)
Q Consensus         2 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~--~~------~~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~D   63 (203)
                      ..+.++..+|+|+|.+|+|||||+++|+..  .+      ..          ......+.......+.+.+  ..+++||
T Consensus         6 ~~~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~--~~i~liD   83 (691)
T 1dar_A            6 EYDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD--HRINIID   83 (691)
T ss_dssp             CCCGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETT--EEEEEEC
T ss_pred             cCccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECC--eEEEEEE
Confidence            345577899999999999999999999831  11      00          0011222223333444554  7899999


Q ss_pred             CCChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 028792           64 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN  128 (203)
Q Consensus        64 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~  128 (203)
                      |||+..+...+...+..+|++++|+|+++..+......|.. +..   .+.|+++++||+|+...
T Consensus        84 TPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~---~~~p~ivviNKiD~~~~  144 (691)
T 1dar_A           84 TPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK---YKVPRIAFANKMDKTGA  144 (691)
T ss_dssp             CCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTTC
T ss_pred             CcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH---cCCCEEEEEECCCcccC
Confidence            99999888888889999999999999998777665555543 222   36899999999998653

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.78  E-value=5.8e-18  Score=138.68  Aligned_cols=117  Identities=14%  Similarity=0.100  Sum_probs=79.6

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCC--CCC--------------------CCccccceeeEEEEEEECCeEEEEEEEe
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDS--YLE--------------------SYISTIGVDFKIRTVEQDGKTIKLQIWD   63 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~--~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D   63 (203)
                      .+..+|+|+|++|+|||||+++|+...  ...                    ......+.......+...+  ..+++||
T Consensus        11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~--~~i~liD   88 (529)
T 2h5e_A           11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHD--CLVNLLD   88 (529)
T ss_dssp             HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETT--EEEEEEC
T ss_pred             cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECC--eEEEEEE
Confidence            457899999999999999999998531  100                    0011111122223344444  7899999


Q ss_pred             CCChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 028792           64 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN  128 (203)
Q Consensus        64 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~  128 (203)
                      |||+..+.......+..+|++|+|+|+++.... ....++.   .....+.|+++++||+|+...
T Consensus        89 TPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~-~t~~~~~---~~~~~~ipiivviNK~Dl~~~  149 (529)
T 2h5e_A           89 TPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVED-RTRKLME---VTRLRDTPILTFMNKLDRDIR  149 (529)
T ss_dssp             CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCH-HHHHHHH---HHTTTTCCEEEEEECTTSCCS
T ss_pred             CCCChhHHHHHHHHHHHCCEEEEEEeCCccchH-HHHHHHH---HHHHcCCCEEEEEcCcCCccc
Confidence            999999888888889999999999999875431 1122222   223347899999999998653

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.78  E-value=1.5e-18  Score=145.78  Aligned_cols=116  Identities=14%  Similarity=0.142  Sum_probs=80.7

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC------------------ccccceeeEEEEEEECCeEEEEEEEeCCC
Q 028792            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESY------------------ISTIGVDFKIRTVEQDGKTIKLQIWDTAG   66 (203)
Q Consensus         5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g   66 (203)
                      .+...+|+|+|+.|+|||||+++|++.......                  ...++.......+...  .+.+++||+||
T Consensus         6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~--~~~~nliDTpG   83 (665)
T 2dy1_A            6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFR--GHRVFLLDAPG   83 (665)
T ss_dssp             CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEET--TEEEEEEECCC
T ss_pred             cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeC--CEEEEEEeCCC
Confidence            355689999999999999999999843221000                  0112222222333334  37899999999


Q ss_pred             hhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 028792           67 QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLT  126 (203)
Q Consensus        67 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~  126 (203)
                      +..+.......+..+|++++|+|+++..... ...++..+..   .+.|+++++||+|+.
T Consensus        84 ~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~q-t~~~~~~~~~---~~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           84 YGDFVGEIRGALEAADAALVAVSAEAGVQVG-TERAWTVAER---LGLPRMVVVTKLDKG  139 (665)
T ss_dssp             SGGGHHHHHHHHHHCSEEEEEEETTTCSCHH-HHHHHHHHHH---TTCCEEEEEECGGGC
T ss_pred             ccchHHHHHHHHhhcCcEEEEEcCCcccchh-HHHHHHHHHH---ccCCEEEEecCCchh
Confidence            9998888888999999999999987654322 2233333333   368999999999986

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.76  E-value=2e-19  Score=137.90  Aligned_cols=163  Identities=21%  Similarity=0.287  Sum_probs=86.8

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhcC-CCCCCC--------ccccceeeEEEEEEECCeEEEEEEEeCCCh-------h
Q 028792            5 YDYLFKLLLIGDSGVGKSCLLLRFADD-SYLESY--------ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ-------E   68 (203)
Q Consensus         5 ~~~~~~i~i~G~~~~GKSsli~~l~~~-~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~-------~   68 (203)
                      .+..++|+++|++|+|||||+++|.+. .++...        .++.........+...+....+++||++|.       +
T Consensus        15 ~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e   94 (301)
T 2qnr_A           15 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRD   94 (301)
T ss_dssp             ---CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC----------
T ss_pred             cCCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHH
Confidence            345689999999999999999999875 333222        112111111222223444578999999997       3


Q ss_pred             hhchhhh-------ccc-------------cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 028792           69 RFRTITS-------SYY-------------RGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN  128 (203)
Q Consensus        69 ~~~~~~~-------~~~-------------~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~  128 (203)
                      .+.....       .++             ..+++++|+.+.+.. +++...  ...+.... ...++++|+||.|+...
T Consensus        95 ~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~-~Ld~~~--~~~l~~l~-~~~~iilV~~K~Dl~~~  170 (301)
T 2qnr_A           95 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH-GLKPLD--VAFMKAIH-NKVNIVPVIAKADTLTL  170 (301)
T ss_dssp             -CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSS-SCCHHH--HHHHHHHT-TTSCEEEEECCGGGSCH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCccc-CCCHHH--HHHHHHHH-hcCCEEEEEEeCCCCCH
Confidence            3333332       222             223456666654321 222222  12233333 35799999999998764


Q ss_pred             ccc--CHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 028792          129 KVV--SYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR  172 (203)
Q Consensus       129 ~~~--~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~  172 (203)
                      .++  ..+++.+++..++++++++||+++ |++++|.++.+.+.+.
T Consensus       171 ~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~  215 (301)
T 2qnr_A          171 KERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKAS  215 (301)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcC
Confidence            433  245677888899999999999999 9999999999988643

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.76  E-value=3.2e-18  Score=132.13  Aligned_cols=112  Identities=17%  Similarity=0.238  Sum_probs=69.3

Q ss_pred             EEEEEEeCCChhh-------------hchhhhccccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeC
Q 028792           57 IKLQIWDTAGQER-------------FRTITSSYYRGAHGIIVVYDVTDQE-SFNNVKQWLNEIDRYASENVNKLLVGNK  122 (203)
Q Consensus        57 ~~~~i~D~~g~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~iiv~nK  122 (203)
                      ..+.+|||||...             +......++..+|++++|+|..+.. .-.....+.   ......+.|+++|+||
T Consensus       131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~---~~~~~~~~~~i~v~NK  207 (315)
T 1jwy_B          131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLA---KEVDPEGKRTIGVITK  207 (315)
T ss_dssp             CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHH---HHHCSSCSSEEEEEEC
T ss_pred             CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHH---HHhCCCCCcEEEEEcC
Confidence            4689999999643             4445566789999999999974322 101111222   2223347899999999


Q ss_pred             CCCCCCcccCHHHHHHHHHHcCCCEEEEecCC------CCCHHHHHHHHHHHHHH
Q 028792          123 CDLTANKVVSYETAKAFADEIGIPFMETSAKS------ATNVEQAFMAMAASIKN  171 (203)
Q Consensus       123 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~------~~gi~~~~~~l~~~~~~  171 (203)
                      +|+........+.+.......+..++++++..      +.|+.+++..+.+.+..
T Consensus       208 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~  262 (315)
T 1jwy_B          208 LDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKN  262 (315)
T ss_dssp             TTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHT
T ss_pred             cccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhC
Confidence            99876543222222211111225677766554      78899999988877753

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.76  E-value=9.8e-19  Score=138.59  Aligned_cols=85  Identities=20%  Similarity=0.229  Sum_probs=47.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEE--EE-------------------ECC-eEEEEEEEeCCC
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRT--VE-------------------QDG-KTIKLQIWDTAG   66 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~--~~-------------------~~~-~~~~~~i~D~~g   66 (203)
                      ++|+++|.||+|||||+|+|.+........+..+.+.....  +.                   +++ ..+.+.+||+||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG   80 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence            58999999999999999999987632222222222222221  11                   122 247799999999


Q ss_pred             hhh----hchhhh---ccccCCcEEEEEEeCCCh
Q 028792           67 QER----FRTITS---SYYRGAHGIIVVYDVTDQ   93 (203)
Q Consensus        67 ~~~----~~~~~~---~~~~~~d~~i~v~d~~~~   93 (203)
                      ...    ...+..   ..++.+|++++|+|+++.
T Consensus        81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTCC
T ss_pred             cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence            753    222222   346889999999999875

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.75  E-value=2e-17  Score=125.06  Aligned_cols=126  Identities=17%  Similarity=0.219  Sum_probs=81.8

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCC-CCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhh-------c-
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLE-SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITS-------S-   76 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~-------~-   76 (203)
                      ...++|+++|.+|+|||||+++|++..+.. ...+..+.......+..++  ..+.+|||||...+.....       . 
T Consensus        37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~iiDTpG~~~~~~~~~~~~~~i~~~  114 (270)
T 1h65_A           37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSF  114 (270)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCC--eEEEEEECCCCCCCccchHHHHHHHHHH
Confidence            357999999999999999999999877532 2122222223333344444  7799999999765432211       1 


Q ss_pred             -cccCCcEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCC--CcEEEEEeCCCCCCCcccCHH
Q 028792           77 -YYRGAHGIIVVYDVTDQESFNNV-KQWLNEIDRYASEN--VNKLLVGNKCDLTANKVVSYE  134 (203)
Q Consensus        77 -~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~--~p~iiv~nK~D~~~~~~~~~~  134 (203)
                       ....+|+++||+|++.. ++... ..|+..+......+  .|+++|+||+|+........+
T Consensus       115 ~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~~~~~  175 (270)
T 1h65_A          115 LLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYD  175 (270)
T ss_dssp             TTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCHH
T ss_pred             hhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCCCCHH
Confidence             13479999999998653 23322 35666665443322  699999999998765443333

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.75  E-value=5.7e-18  Score=132.54  Aligned_cols=128  Identities=16%  Similarity=0.174  Sum_probs=96.0

Q ss_pred             eEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCC----------hhhHHHHHHHHHHHHhhc-CCC
Q 028792           45 FKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTD----------QESFNNVKQWLNEIDRYA-SEN  113 (203)
Q Consensus        45 ~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~l~~~~-~~~  113 (203)
                      +....+..++  +.+++||++|+++++..|..++.+++++|||+|+++          ..++.+...|+..+.... ..+
T Consensus       191 i~~~~~~~~~--~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~  268 (362)
T 1zcb_A          191 IHEYDFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSN  268 (362)
T ss_dssp             EEEEEEEETT--EEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTT
T ss_pred             eEEEEeeeCC--eEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCC
Confidence            3344555655  889999999999999999999999999999999998          678999888888876542 246


Q ss_pred             CcEEEEEeCCCCCCCc----------------ccCHHHHHHHHH-----------HcCCCEEEEecCCCCCHHHHHHHHH
Q 028792          114 VNKLLVGNKCDLTANK----------------VVSYETAKAFAD-----------EIGIPFMETSAKSATNVEQAFMAMA  166 (203)
Q Consensus       114 ~p~iiv~nK~D~~~~~----------------~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~gi~~~~~~l~  166 (203)
                      .|+++++||.|+....                ..+.+++..++.           ..++.+++|||+++.|++++|.++.
T Consensus       269 ~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~  348 (362)
T 1zcb_A          269 VSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVK  348 (362)
T ss_dssp             SEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHH
Confidence            8999999999985321                256677777652           3357889999999999999999999


Q ss_pred             HHHHHHhc
Q 028792          167 ASIKNRMA  174 (203)
Q Consensus       167 ~~~~~~~~  174 (203)
                      +.+.+..-
T Consensus       349 ~~i~~~~l  356 (362)
T 1zcb_A          349 DTILHDNL  356 (362)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            98876543

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.74  E-value=5e-18  Score=135.01  Aligned_cols=159  Identities=17%  Similarity=0.245  Sum_probs=80.9

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCC-CCC-------ccccceeeEEEEEEECCeEEEEEEEeCCChhhhc------
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYL-ESY-------ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR------   71 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------   71 (203)
                      +..++|+|+|++|+|||||++.|.+..++ +..       .++.........+...+....+.+||++|.....      
T Consensus        29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~  108 (418)
T 2qag_C           29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW  108 (418)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------C
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhH
Confidence            45688999999999999999999987653 211       1122111111112223334578999999965431      


Q ss_pred             -h------------------hhhccccCCcEEEEEEeCCCh-hhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCcc
Q 028792           72 -T------------------ITSSYYRGAHGIIVVYDVTDQ-ESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTANKV  130 (203)
Q Consensus        72 -~------------------~~~~~~~~~d~~i~v~d~~~~-~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~  130 (203)
                       .                  +...++.++++.+++|+.... .+++... .|+..+.    .+.|+|+|+||+|+....+
T Consensus       109 ~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~----~~v~iIlVinK~Dll~~~e  184 (418)
T 2qag_C          109 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----EKVNIIPLIAKADTLTPEE  184 (418)
T ss_dssp             HHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT----TTSEEEEEEESTTSSCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh----ccCcEEEEEEcccCccHHH
Confidence             1                  112344455543444443322 2333332 3544442    2689999999999876555


Q ss_pred             cCH--HHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHHH
Q 028792          131 VSY--ETAKAFADEIGIPFMETSAKSATNVEQAFMAMAAS  168 (203)
Q Consensus       131 ~~~--~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~  168 (203)
                      +..  +.+.+++..++++++++|++++.++.++|..|...
T Consensus       185 v~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~  224 (418)
T 2qag_C          185 CQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDR  224 (418)
T ss_dssp             HHHHHHHHHHHHHHHTCCCCCCC-----------------
T ss_pred             HHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhh
Confidence            443  56777888889999999999999999888777654

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.74  E-value=6.2e-17  Score=136.58  Aligned_cols=118  Identities=17%  Similarity=0.182  Sum_probs=84.1

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhc--CCCCC-----------C-----CccccceeeEEEEEEECCeEEEEEEEeCCC
Q 028792            5 YDYLFKLLLIGDSGVGKSCLLLRFAD--DSYLE-----------S-----YISTIGVDFKIRTVEQDGKTIKLQIWDTAG   66 (203)
Q Consensus         5 ~~~~~~i~i~G~~~~GKSsli~~l~~--~~~~~-----------~-----~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g   66 (203)
                      .++..+|+|+|.+|+|||||+++|+.  +.+..           .     ..+.++.......+.+++  ..+++|||||
T Consensus         7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG   84 (693)
T 2xex_A            7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG--HRVNIIDTPG   84 (693)
T ss_dssp             STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETT--EEEEEECCCC
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECC--eeEEEEECcC
Confidence            45679999999999999999999984  22110           0     011222222333445555  7899999999


Q ss_pred             hhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 028792           67 QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN  128 (203)
Q Consensus        67 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~  128 (203)
                      +..+...+...+..+|++++|+|+++..+......|.. +..   .+.|+++|+||+|+...
T Consensus        85 ~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~---~~~p~ilviNK~Dl~~~  142 (693)
T 2xex_A           85 HVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATT---YGVPRIVFVNKMDKLGA  142 (693)
T ss_dssp             CSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTTC
T ss_pred             CcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHH---cCCCEEEEEECCCcccc
Confidence            99888888888999999999999998766555544443 332   36899999999998653

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.73  E-value=2.5e-18  Score=131.89  Aligned_cols=133  Identities=18%  Similarity=0.211  Sum_probs=107.0

Q ss_pred             HHHHHHhcCCCC-CCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChh-hHHHHH
Q 028792           23 CLLLRFADDSYL-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQE-SFNNVK  100 (203)
Q Consensus        23 sli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~  100 (203)
                      +|+.++..+.+. ..+.||++..+. ..+..++   .+.+||+  ++++..++..++.++|++|+|||+++++ ++..+.
T Consensus        32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~  105 (301)
T 1u0l_A           32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID  105 (301)
T ss_dssp             CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred             cEEEEEEcccccccCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence            688888888887 778888884443 3322222   6889999  8889999999999999999999999987 688888


Q ss_pred             HHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC--CCEEEEecCCCCCHHHHHHHHH
Q 028792          101 QWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIG--IPFMETSAKSATNVEQAFMAMA  166 (203)
Q Consensus       101 ~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~~~~~l~  166 (203)
                      .|+..+..   .+.|+++|+||+|+.+...+  ++..+++..++  ++++++||++|.|++++|.++.
T Consensus       106 ~~l~~~~~---~~~piilv~NK~DL~~~~~v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~  168 (301)
T 1u0l_A          106 KFLVLAEK---NELETVMVINKMDLYDEDDL--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLK  168 (301)
T ss_dssp             HHHHHHHH---TTCEEEEEECCGGGCCHHHH--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHS
T ss_pred             HHHHHHHH---CCCCEEEEEeHHHcCCchhH--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhc
Confidence            89887654   36899999999999754332  45667777777  8999999999999999999864

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.73  E-value=3.2e-17  Score=129.41  Aligned_cols=125  Identities=20%  Similarity=0.182  Sum_probs=99.7

Q ss_pred             EEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCC----------hhhHHHHHHHHHHHHhhc-CCCCc
Q 028792           47 IRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTD----------QESFNNVKQWLNEIDRYA-SENVN  115 (203)
Q Consensus        47 ~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~l~~~~-~~~~p  115 (203)
                      ...+.+++  +.+++||++|+++++..|..++.+++++|||||+++          ..+|.+...|+..+.... ..+.|
T Consensus       209 ~~~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~p  286 (402)
T 1azs_C          209 ETKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTIS  286 (402)
T ss_dssp             EEEEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCC
T ss_pred             EEEeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCe
Confidence            34555665  889999999999999999999999999999999999          889999999998887653 35789


Q ss_pred             EEEEEeCCCCCCCcc---c---------------------------CHHHHHHHH-----HH--------cCCCEEEEec
Q 028792          116 KLLVGNKCDLTANKV---V---------------------------SYETAKAFA-----DE--------IGIPFMETSA  152 (203)
Q Consensus       116 ~iiv~nK~D~~~~~~---~---------------------------~~~~~~~~~-----~~--------~~~~~~~~Sa  152 (203)
                      ++||+||.|+...+.   .                           ..+++..|+     ..        ..+.+++|||
T Consensus       287 iiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA  366 (402)
T 1azs_C          287 VILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCA  366 (402)
T ss_dssp             EEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCT
T ss_pred             EEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEe
Confidence            999999999853221   1                           134455553     22        2456789999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHh
Q 028792          153 KSATNVEQAFMAMAASIKNRM  173 (203)
Q Consensus       153 ~~~~gi~~~~~~l~~~~~~~~  173 (203)
                      +++.||+++|.++.+.+.+..
T Consensus       367 ~d~~nV~~vF~~v~~~I~~~~  387 (402)
T 1azs_C          367 VDTENIRRVFNDCRDIIQRMH  387 (402)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHH
T ss_pred             ecCcCHHHHHHHHHHHHHHHH
Confidence            999999999999998887553

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.72  E-value=1.7e-16  Score=134.03  Aligned_cols=120  Identities=16%  Similarity=0.114  Sum_probs=82.8

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhcCC--CCCC----------------CccccceeeEEEEEEEC-----CeEEEEE
Q 028792            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDS--YLES----------------YISTIGVDFKIRTVEQD-----GKTIKLQ   60 (203)
Q Consensus         4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~--~~~~----------------~~~~~~~~~~~~~~~~~-----~~~~~~~   60 (203)
                      +.++..+|+|+|..++|||||+++|+...  +...                ....++.......+.+.     +..+.++
T Consensus         6 ~~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~   85 (704)
T 2rdo_7            6 PIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRIN   85 (704)
T ss_pred             CcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEE
Confidence            34677999999999999999999997421  1100                01112222222233332     2347899


Q ss_pred             EEeCCChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028792           61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTA  127 (203)
Q Consensus        61 i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~  127 (203)
                      +|||||+..|...+...+..+|++|+|+|+++.........|. .+.   ..+.|+++++||+|+..
T Consensus        86 liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~-~~~---~~~ip~ilviNKiD~~~  148 (704)
T 2rdo_7           86 IIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWR-QAN---KYKVPRIAFVNKMDRMG  148 (704)
T ss_pred             EEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHH-HHH---HcCCCEEEEEeCCCccc
Confidence            9999999988888888999999999999999865543333332 222   23689999999999864

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.70  E-value=1.3e-17  Score=122.25  Aligned_cols=156  Identities=20%  Similarity=0.195  Sum_probs=94.5

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccccee--------------eEEEEEEE----------------CCeE
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVD--------------FKIRTVEQ----------------DGKT   56 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~--------------~~~~~~~~----------------~~~~   56 (203)
                      ...+|+++|.+|+|||||+++|............+..+              .....+..                ....
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD  108 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence            45789999999999999999998542111100000000              00011111                0112


Q ss_pred             EEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHH
Q 028792           57 IKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETA  136 (203)
Q Consensus        57 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~  136 (203)
                      ..+.+||++|....   ...+....+.+++|+|+.+....  ...+...   .   +.|.++|+||+|+.+......++.
T Consensus       109 ~d~iiidt~G~~~~---~~~~~~~~~~~i~vvd~~~~~~~--~~~~~~~---~---~~~~iiv~NK~Dl~~~~~~~~~~~  177 (221)
T 2wsm_A          109 CDLLLIENVGNLIC---PVDFDLGENYRVVMVSVTEGDDV--VEKHPEI---F---RVADLIVINKVALAEAVGADVEKM  177 (221)
T ss_dssp             CSEEEEEEEEBSSG---GGGCCCSCSEEEEEEEGGGCTTH--HHHCHHH---H---HTCSEEEEECGGGHHHHTCCHHHH
T ss_pred             CCEEEEeCCCCCCC---CchhccccCcEEEEEeCCCcchh--hhhhhhh---h---hcCCEEEEecccCCcchhhHHHHH
Confidence            46789999984110   01111256889999998765321  1111111   1   368899999999864323455666


Q ss_pred             HHHHHHc--CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 028792          137 KAFADEI--GIPFMETSAKSATNVEQAFMAMAASIKNRM  173 (203)
Q Consensus       137 ~~~~~~~--~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~  173 (203)
                      .++....  +++++++||++|.|++++|++|.+.+..+.
T Consensus       178 ~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~~  216 (221)
T 2wsm_A          178 KADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVHS  216 (221)
T ss_dssp             HHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC---
T ss_pred             HHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHHH
Confidence            6666554  378999999999999999999998775543

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.69  E-value=5.8e-16  Score=120.71  Aligned_cols=147  Identities=14%  Similarity=0.134  Sum_probs=91.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCe---------------EEEEEEEeCCChhhhc-
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGK---------------TIKLQIWDTAGQERFR-   71 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~~-   71 (203)
                      .++|+++|.||+|||||+|+|.+........+..+.+.....+.+++.               ...+.+||+||..... 
T Consensus         2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~   81 (363)
T 1jal_A            2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS   81 (363)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence            378999999999999999999986643332332222222233444432               1568999999976543 


Q ss_pred             ---hhh---hccccCCcEEEEEEeCCCh----------hhHHHHHHHHHHH-----------------------------
Q 028792           72 ---TIT---SSYYRGAHGIIVVYDVTDQ----------ESFNNVKQWLNEI-----------------------------  106 (203)
Q Consensus        72 ---~~~---~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~l-----------------------------  106 (203)
                         .+.   ...++.+|++++|+|+++.          +.+.++..+..++                             
T Consensus        82 ~~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~~~  161 (363)
T 1jal_A           82 KGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKFE  161 (363)
T ss_dssp             HHGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             ccchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhHHHH
Confidence               222   2346899999999999852          2222222111111                             


Q ss_pred             -----------H-------------------hh-cCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCC
Q 028792          107 -----------D-------------------RY-ASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKS  154 (203)
Q Consensus       107 -----------~-------------------~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  154 (203)
                                 .                   .+ ....+|+++++|+.|..-......+.+.+++...+++++++||+.
T Consensus       162 ~~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~~  240 (363)
T 1jal_A          162 LSVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAAI  240 (363)
T ss_dssp             HHHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHHH
T ss_pred             HHHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechHH
Confidence                       0                   01 112489999999998642112335667788888899999999653

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.67  E-value=1.1e-15  Score=125.74  Aligned_cols=117  Identities=16%  Similarity=0.088  Sum_probs=82.3

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcC----------------------CCCCCCccccceeeEEEEEEECCeEEEEEEEe
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADD----------------------SYLESYISTIGVDFKIRTVEQDGKTIKLQIWD   63 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D   63 (203)
                      .+.=+|+|+|..++|||||..+|+..                      ..+.+....++.......+.+++  +.++|+|
T Consensus        29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlID  106 (548)
T 3vqt_A           29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD--RVVNLLD  106 (548)
T ss_dssp             HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT--EEEEEEC
T ss_pred             cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC--EEEEEEe
Confidence            35678999999999999999999621                      01122233444444555666776  7899999


Q ss_pred             CCChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 028792           64 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN  128 (203)
Q Consensus        64 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~  128 (203)
                      |||+..|.......+.-+|++|+|+|+.+.-.......| .....   .+.|.++++||+|....
T Consensus       107 TPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~-~~a~~---~~lp~i~fINK~Dr~~a  167 (548)
T 3vqt_A          107 TPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLM-DVCRM---RATPVMTFVNKMDREAL  167 (548)
T ss_dssp             CCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHH-HHHHH---TTCCEEEEEECTTSCCC
T ss_pred             CCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHH-HHHHH---hCCceEEEEecccchhc
Confidence            999999999999999999999999999865432222333 22333   36899999999997543

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.66  E-value=1.2e-17  Score=130.86  Aligned_cols=159  Identities=18%  Similarity=0.188  Sum_probs=93.4

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCc------cccc--------------------eee--------------
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYI------STIG--------------------VDF--------------   45 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~------~~~~--------------------~~~--------------   45 (203)
                      ...++|+|+|.+|+|||||+++|++..+.+...      |+..                    .++              
T Consensus        29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i  108 (353)
T 2x2e_A           29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  108 (353)
T ss_dssp             CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence            456899999999999999999999887642211      1100                    000              


Q ss_pred             ---------EEEEEEEC-CeEEEEEEEeCCChh-------------hhchhhhccccCC-cEEEEEEeCCChhhHHHHHH
Q 028792           46 ---------KIRTVEQD-GKTIKLQIWDTAGQE-------------RFRTITSSYYRGA-HGIIVVYDVTDQESFNNVKQ  101 (203)
Q Consensus        46 ---------~~~~~~~~-~~~~~~~i~D~~g~~-------------~~~~~~~~~~~~~-d~~i~v~d~~~~~s~~~~~~  101 (203)
                               ....+.+. .....+.+|||||..             .+..+...++... +++++|+|++....-..   
T Consensus       109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~---  185 (353)
T 2x2e_A          109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSD---  185 (353)
T ss_dssp             HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCH---
T ss_pred             cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhH---
Confidence                     00001110 012568999999953             2334455556555 45555667654222111   


Q ss_pred             HHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHH--HHHHcC-CCEEEEecCCCCCHHHHHHHHHH
Q 028792          102 WLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKA--FADEIG-IPFMETSAKSATNVEQAFMAMAA  167 (203)
Q Consensus       102 ~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~--~~~~~~-~~~~~~Sa~~~~gi~~~~~~l~~  167 (203)
                      +...+......+.|+++|+||+|+.+......+....  +....+ .+++++||+++.|++++++++.+
T Consensus       186 ~~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~  254 (353)
T 2x2e_A          186 ALKVAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  254 (353)
T ss_dssp             HHHHHHHHCTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHHhCcCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence            2222333444578999999999987543321221110  000112 35678999999999999999876

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.66  E-value=7e-17  Score=126.60  Aligned_cols=103  Identities=12%  Similarity=0.157  Sum_probs=69.1

Q ss_pred             EEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHH
Q 028792           57 IKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETA  136 (203)
Q Consensus        57 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~  136 (203)
                      +.+.++||||...   .....+..+|++++|+|....+.+..+..        ...+.|.++|+||+|+....... ...
T Consensus       172 ~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~--------~~~~~p~ivVlNK~Dl~~~~~~~-~~~  239 (355)
T 3p32_A          172 FDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKK--------GVLELADIVVVNKADGEHHKEAR-LAA  239 (355)
T ss_dssp             CCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCT--------TSGGGCSEEEEECCCGGGHHHHH-HHH
T ss_pred             CCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHH--------hHhhcCCEEEEECCCCcChhHHH-HHH
Confidence            5788999999432   22334588999999999876544321111        01135889999999985432211 111


Q ss_pred             HHHHHH----------cCCCEEEEecCCCCCHHHHHHHHHHHHHH
Q 028792          137 KAFADE----------IGIPFMETSAKSATNVEQAFMAMAASIKN  171 (203)
Q Consensus       137 ~~~~~~----------~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~  171 (203)
                      .++...          ++.+++++||++|+|+++++++|.+.+..
T Consensus       240 ~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~  284 (355)
T 3p32_A          240 RELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV  284 (355)
T ss_dssp             HHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            222221          25789999999999999999999988765

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.66  E-value=1.4e-18  Score=127.89  Aligned_cols=155  Identities=21%  Similarity=0.251  Sum_probs=93.0

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeE------------EEEEEEC-CeE-----------------
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFK------------IRTVEQD-GKT-----------------   56 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~-~~~-----------------   56 (203)
                      +.++|+|+|.+|||||||+++|....+...+.+++..++.            ...+..+ +..                 
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~  116 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL  116 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence            4689999999999999999999976544333334333322            1122221 110                 


Q ss_pred             --EEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHH
Q 028792           57 --IKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYE  134 (203)
Q Consensus        57 --~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~  134 (203)
                        ..+.++|++|.-..   ...+-...+..+.++|+.......  ......+      ..|.++|+||+|+.+......+
T Consensus       117 ~~~d~~~id~~g~i~~---~~s~~~~~~~~~~v~~~~~~~~~~--~~~~~~~------~~~~iiv~NK~Dl~~~~~~~~~  185 (226)
T 2hf9_A          117 DEIDLLFIENVGNLIC---PADFDLGTHKRIVVISTTEGDDTI--EKHPGIM------KTADLIVINKIDLADAVGADIK  185 (226)
T ss_dssp             GGCSEEEEECCSCSSG---GGGCCCSCSEEEEEEEGGGCTTTT--TTCHHHH------TTCSEEEEECGGGHHHHTCCHH
T ss_pred             CCCCEEEEeCCCCccC---cchhhhccCcEEEEEecCcchhhH--hhhhhHh------hcCCEEEEeccccCchhHHHHH
Confidence              13455566552110   011112344566777753211100  0000111      3678999999998654334566


Q ss_pred             HHHHHHHHc--CCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 028792          135 TAKAFADEI--GIPFMETSAKSATNVEQAFMAMAASIKNR  172 (203)
Q Consensus       135 ~~~~~~~~~--~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~  172 (203)
                      +..+++...  +++++++||++|.|++++|.+|.+.+..+
T Consensus       186 ~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~  225 (226)
T 2hf9_A          186 KMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKEV  225 (226)
T ss_dssp             HHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHhh
Confidence            677766654  57899999999999999999999887643

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.64  E-value=8.7e-15  Score=114.67  Aligned_cols=153  Identities=14%  Similarity=0.104  Sum_probs=102.1

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhc-------hhhhcccc
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR-------TITSSYYR   79 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~~~~~~~   79 (203)
                      -..+|+++|.||||||||+|+|.+........+.++.+.....+.+++  .++.++|+||.....       ......++
T Consensus        71 g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~  148 (376)
T 4a9a_A           71 GVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVAR  148 (376)
T ss_dssp             SSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHHHH
Confidence            346899999999999999999998765555557777778888888888  678899999954221       11223467


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHhh--cCCCCcEEEEEeCCCCCCC--------cccCHHHHHHHHHHcCCCEEE
Q 028792           80 GAHGIIVVYDVTDQESFNNVKQWLNEIDRY--ASENVNKLLVGNKCDLTAN--------KVVSYETAKAFADEIGIPFME  149 (203)
Q Consensus        80 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~--~~~~~p~iiv~nK~D~~~~--------~~~~~~~~~~~~~~~~~~~~~  149 (203)
                      .+|++++|+|++++..-  .......+...  .....|.++++||.|....        .....+++..+...+.+.--+
T Consensus       149 ~ad~il~vvD~~~p~~~--~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt~kp  226 (376)
T 4a9a_A          149 TCNLLFIILDVNKPLHH--KQIIEKELEGVGIRLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSAE  226 (376)
T ss_dssp             HCSEEEEEEETTSHHHH--HHHHHHHHHHTTEEETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCCSEE
T ss_pred             hcCccccccccCccHHH--HHHHHHHHHHhhHhhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcccCCC
Confidence            89999999999987532  22222233322  1135688899999996421        235566666666666554334


Q ss_pred             EecCCCCCHHHHHH
Q 028792          150 TSAKSATNVEQAFM  163 (203)
Q Consensus       150 ~Sa~~~~gi~~~~~  163 (203)
                      +-...+...+++.+
T Consensus       227 v~~~~nv~eddl~d  240 (376)
T 4a9a_A          227 IAFRCDATVDDLID  240 (376)
T ss_dssp             EEECSCCCHHHHHH
T ss_pred             eeecccCCHHHHHH
Confidence            44444555555543

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.61  E-value=6.1e-16  Score=127.33  Aligned_cols=122  Identities=16%  Similarity=0.202  Sum_probs=80.1

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhcCCCC---CCCccccceeeEEEE----------------------EE-------
Q 028792            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYL---ESYISTIGVDFKIRT----------------------VE-------   51 (203)
Q Consensus         4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~---~~~~~~~~~~~~~~~----------------------~~-------   51 (203)
                      +.+..++|+|+|.+|+|||||+|+|++..+.   ....+++........                      +.       
T Consensus        61 ~~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~  140 (550)
T 2qpt_A           61 DFDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFL  140 (550)
T ss_dssp             TTSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCC
T ss_pred             cccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccc
Confidence            3456789999999999999999999988764   222222211000000                      00       


Q ss_pred             -------ECCe-EEEEEEEeCCChhh-----------hchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCC
Q 028792           52 -------QDGK-TIKLQIWDTAGQER-----------FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASE  112 (203)
Q Consensus        52 -------~~~~-~~~~~i~D~~g~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~  112 (203)
                             +.+. ...+.+|||||...           +......++..+|++++|+|+++.........++..+.   ..
T Consensus       141 ~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~---~~  217 (550)
T 2qpt_A          141 NRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALR---GH  217 (550)
T ss_dssp             TTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTT---TC
T ss_pred             ccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHH---hc
Confidence                   0000 02588999999764           34555667889999999999987544444455554443   33


Q ss_pred             CCcEEEEEeCCCCCCC
Q 028792          113 NVNKLLVGNKCDLTAN  128 (203)
Q Consensus       113 ~~p~iiv~nK~D~~~~  128 (203)
                      +.|+++|+||+|+...
T Consensus       218 ~~pvilVlNK~Dl~~~  233 (550)
T 2qpt_A          218 EDKIRVVLNKADMVET  233 (550)
T ss_dssp             GGGEEEEEECGGGSCH
T ss_pred             CCCEEEEEECCCccCH
Confidence            5799999999998754

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.61  E-value=1.8e-15  Score=118.60  Aligned_cols=155  Identities=15%  Similarity=0.133  Sum_probs=92.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECC-------------------eEEEEEEEeCCChhh
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDG-------------------KTIKLQIWDTAGQER   69 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~i~D~~g~~~   69 (203)
                      ++|+++|.||+|||||+++|.+........+..+.........+.+                   ....+.+||+||...
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~   81 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK   81 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence            6899999999999999999987542212112212222222222221                   235789999999765


Q ss_pred             hc----hh---hhccccCCcEEEEEEeCCCh----------hhHHHHHHHHHHH--------------------------
Q 028792           70 FR----TI---TSSYYRGAHGIIVVYDVTDQ----------ESFNNVKQWLNEI--------------------------  106 (203)
Q Consensus        70 ~~----~~---~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~l--------------------------  106 (203)
                      ..    .+   ....++.+|++++|+|+++.          +.+.++..+..++                          
T Consensus        82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~~~~~~~~~  161 (368)
T 2dby_A           82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEARADRERL  161 (368)
T ss_dssp             CCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred             cccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhhhccchhHH
Confidence            42    12   22346899999999999852          1111111100000                          


Q ss_pred             --------------------------------Hhhc-CCCCcEEEEEeCCCC--CCC-cccCHHHHHHHHHHcCCCEEEE
Q 028792          107 --------------------------------DRYA-SENVNKLLVGNKCDL--TAN-KVVSYETAKAFADEIGIPFMET  150 (203)
Q Consensus       107 --------------------------------~~~~-~~~~p~iiv~nK~D~--~~~-~~~~~~~~~~~~~~~~~~~~~~  150 (203)
                                                      ..+. ...+|+++++||.|.  .+. .....+.+.++++..+++++++
T Consensus       162 ~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~i  241 (368)
T 2dby_A          162 PLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVV  241 (368)
T ss_dssp             HHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEE
T ss_pred             HHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEe
Confidence                                            0000 123799999999973  222 1234566788888889999999


Q ss_pred             ecCCCCCHHHHHH
Q 028792          151 SAKSATNVEQAFM  163 (203)
Q Consensus       151 Sa~~~~gi~~~~~  163 (203)
                      ||+...++.++..
T Consensus       242 SAk~E~el~eL~~  254 (368)
T 2dby_A          242 SARLEAELAELSG  254 (368)
T ss_dssp             CHHHHHHHHTSCH
T ss_pred             echhHHHHHHhch
Confidence            9988655554443

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.59  E-value=2.9e-15  Score=128.84  Aligned_cols=118  Identities=19%  Similarity=0.252  Sum_probs=84.5

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhcCC------------CC----CCCcc--ccceeeEEEEEE------------ECC
Q 028792            5 YDYLFKLLLIGDSGVGKSCLLLRFADDS------------YL----ESYIS--TIGVDFKIRTVE------------QDG   54 (203)
Q Consensus         5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~------------~~----~~~~~--~~~~~~~~~~~~------------~~~   54 (203)
                      .++..+|+|+|.+++|||||+++|+...            +.    .+..+  |+........+.            .++
T Consensus        16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~   95 (842)
T 1n0u_A           16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG   95 (842)
T ss_dssp             GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence            3567899999999999999999998531            10    01111  222122222222            234


Q ss_pred             eEEEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 028792           55 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLT  126 (203)
Q Consensus        55 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~  126 (203)
                      ..+.+++|||||+..|...+...+..+|++|+|+|+++..++.....|....    ..+.|+++++||+|+.
T Consensus        96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~----~~~~p~ilviNK~D~~  163 (842)
T 1n0u_A           96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL----GERIKPVVVINKVDRA  163 (842)
T ss_dssp             SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH----HTTCEEEEEEECHHHH
T ss_pred             CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH----HcCCCeEEEEECCCcc
Confidence            4688999999999999999999999999999999999887766655554433    2368999999999975

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.59  E-value=6.2e-16  Score=120.81  Aligned_cols=103  Identities=11%  Similarity=0.093  Sum_probs=62.7

Q ss_pred             EEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHH
Q 028792           57 IKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETA  136 (203)
Q Consensus        57 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~  136 (203)
                      +.+.++||+|....   ...+...+|++++|+|+++++....+..   .+     ...|.++|+||+|+.+.... ....
T Consensus       167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i-----l~~~~ivVlNK~Dl~~~~~~-~~~~  234 (349)
T 2www_A          167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI-----IEMADLVAVTKSDGDLIVPA-RRIQ  234 (349)
T ss_dssp             CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHHH-HHHH
T ss_pred             CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH-----HhcCCEEEEeeecCCCchhH-HHHH
Confidence            56789999995321   2334678999999999986543211111   11     13578999999998532111 0111


Q ss_pred             HHHHH----------HcCCCEEEEecCCCCCHHHHHHHHHHHHHH
Q 028792          137 KAFAD----------EIGIPFMETSAKSATNVEQAFMAMAASIKN  171 (203)
Q Consensus       137 ~~~~~----------~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~  171 (203)
                      ..+..          .+..+++.+||++|+|+++++++|.+.+..
T Consensus       235 ~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~  279 (349)
T 2www_A          235 AEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL  279 (349)
T ss_dssp             HHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence            22211          124578999999999999999999887643

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.56  E-value=2.7e-14  Score=107.26  Aligned_cols=112  Identities=14%  Similarity=-0.002  Sum_probs=68.7

Q ss_pred             EEEEEEeCCChhhhchhhh------ccccCCcEEEEEEeCCChhhHHHHHHHHH-HHHhhcCCCCcEEEEEeCCCCCCCc
Q 028792           57 IKLQIWDTAGQERFRTITS------SYYRGAHGIIVVYDVTDQESFNNVKQWLN-EIDRYASENVNKLLVGNKCDLTANK  129 (203)
Q Consensus        57 ~~~~i~D~~g~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~-~l~~~~~~~~p~iiv~nK~D~~~~~  129 (203)
                      +.+.+|||||.........      ..+.. +++++++|+.............. ........+.|+++|+||+|+....
T Consensus       109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~  187 (262)
T 1yrb_A          109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE  187 (262)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred             CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence            4689999999866433221      23456 89999999764322222221111 1111111257999999999986543


Q ss_pred             ccCHHHHHH----------------------------HHHHcC--CCEEEEecCCCCCHHHHHHHHHHHHHH
Q 028792          130 VVSYETAKA----------------------------FADEIG--IPFMETSAKSATNVEQAFMAMAASIKN  171 (203)
Q Consensus       130 ~~~~~~~~~----------------------------~~~~~~--~~~~~~Sa~~~~gi~~~~~~l~~~~~~  171 (203)
                      ..  +++.+                            ++..++  ++++++||++++|+++++++|.+.+..
T Consensus       188 ~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~  257 (262)
T 1yrb_A          188 EK--ERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCT  257 (262)
T ss_dssp             HH--HHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             cH--HHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcc
Confidence            21  11111                            123333  489999999999999999999887653

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.55  E-value=4.2e-15  Score=115.86  Aligned_cols=104  Identities=16%  Similarity=0.142  Sum_probs=65.2

Q ss_pred             EEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCH--H
Q 028792           57 IKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSY--E  134 (203)
Q Consensus        57 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~--~  134 (203)
                      +.+.++||||......   .....+|++++|+|++..+.+..+..   ..     .+.|.++|+||+|+........  +
T Consensus       149 ~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~-----~~~p~ivv~NK~Dl~~~~~~~~~~~  217 (341)
T 2p67_A          149 YDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK---GL-----MEVADLIVINKDDGDNHTNVAIARH  217 (341)
T ss_dssp             CSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH---HH-----HHHCSEEEECCCCTTCHHHHHHHHH
T ss_pred             CCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH---hh-----hcccCEEEEECCCCCChHHHHHHHH
Confidence            5789999999654332   24588999999999976543211111   00     1357799999999864322111  1


Q ss_pred             HHHHHHHHc-------CCCEEEEecCCCCCHHHHHHHHHHHHHH
Q 028792          135 TAKAFADEI-------GIPFMETSAKSATNVEQAFMAMAASIKN  171 (203)
Q Consensus       135 ~~~~~~~~~-------~~~~~~~Sa~~~~gi~~~~~~l~~~~~~  171 (203)
                      +..+.....       ..+++++||++|.|+++++++|.+.+..
T Consensus       218 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~~  261 (341)
T 2p67_A          218 MYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTA  261 (341)
T ss_dssp             HHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence            222222222       3568999999999999999999987653

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.54  E-value=1.1e-14  Score=122.70  Aligned_cols=159  Identities=16%  Similarity=0.154  Sum_probs=96.0

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCC-CCcccccee----------------------------------------
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLE-SYISTIGVD----------------------------------------   44 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~----------------------------------------   44 (203)
                      -...+|+|+|.+++|||||+|+|++..+.+ .....+...                                        
T Consensus        49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~  128 (772)
T 3zvr_A           49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  128 (772)
T ss_dssp             GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence            356799999999999999999999876622 211111000                                        


Q ss_pred             ----------eEEEEEEECCeEEEEEEEeCCChhh-------------hchhhhccc-cCCcEEEEEEeCCChhhHHHHH
Q 028792           45 ----------FKIRTVEQDGKTIKLQIWDTAGQER-------------FRTITSSYY-RGAHGIIVVYDVTDQESFNNVK  100 (203)
Q Consensus        45 ----------~~~~~~~~~~~~~~~~i~D~~g~~~-------------~~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~  100 (203)
                                .....+...+ ...+.++||||...             .......++ ..+|++++|+|++....-.+..
T Consensus       129 ~g~~~~is~~~i~l~I~~P~-~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l  207 (772)
T 3zvr_A          129 TGTNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL  207 (772)
T ss_dssp             HCSTTCCCSCCEEEEEEETT-CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHH
T ss_pred             cCCCCcccccceEEEEecCC-CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHH
Confidence                      0001111111 12478999999543             122223333 6789999999998643322222


Q ss_pred             HHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHH-H-HHHcC-CCEEEEecCCCCCHHHHHHHHHHH
Q 028792          101 QWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKA-F-ADEIG-IPFMETSAKSATNVEQAFMAMAAS  168 (203)
Q Consensus       101 ~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~-~-~~~~~-~~~~~~Sa~~~~gi~~~~~~l~~~  168 (203)
                      .++   ......+.|+++|+||+|+............. . ....+ .+++++||++|.|++++++.+.+.
T Consensus       208 ~ll---~~L~~~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e  275 (772)
T 3zvr_A          208 KIA---KEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  275 (772)
T ss_dssp             HHH---HHHCTTCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred             HHH---HHHHhcCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence            222   23334478999999999997654432221110 0 00012 357789999999999999998763

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.52  E-value=5.2e-15  Score=123.91  Aligned_cols=114  Identities=15%  Similarity=0.204  Sum_probs=78.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc--CCCC----------------CCCccccceeeEEEEEEECCeEEEEEEEeCCChhh
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFAD--DSYL----------------ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER   69 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~--~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~   69 (203)
                      .-+|+|+|+.++|||||..+|+.  +...                .+....++.......+.+++  +.++++||||+..
T Consensus         2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlIDTPGH~D   79 (638)
T 3j25_A            2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWEN--TKVNIIDTPGHMD   79 (638)
T ss_dssp             CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSS--CBCCCEECCCSSS
T ss_pred             eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECC--EEEEEEECCCcHH
Confidence            45799999999999999999962  1111                01111223333333444555  7789999999999


Q ss_pred             hchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028792           70 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTA  127 (203)
Q Consensus        70 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~  127 (203)
                      |.......+..+|++|+|+|+.+.-.... +..+.....+   +.|.++++||+|...
T Consensus        80 F~~Ev~raL~~~DgavlVVDa~~GV~~qT-~~v~~~a~~~---~lp~i~~INKmDr~~  133 (638)
T 3j25_A           80 FLAEVYRSLSVLDGAILLISAKDGVQAQT-RILFHALRKM---GIPTIFFINKIDQNG  133 (638)
T ss_dssp             THHHHHHHHTTCSEEECCEESSCTTCSHH-HHHHHHHHHH---TCSCEECCEECCSSS
T ss_pred             HHHHHHHHHHHhCEEEEEEeCCCCCcHHH-HHHHHHHHHc---CCCeEEEEecccccc
Confidence            99999999999999999999986432222 2333333333   578899999999754

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.50  E-value=6.9e-13  Score=112.46  Aligned_cols=118  Identities=18%  Similarity=0.202  Sum_probs=79.6

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcC--------CC----------CCCCccccceeeEEEEEEECC-----eEEEEEEE
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADD--------SY----------LESYISTIGVDFKIRTVEQDG-----KTIKLQIW   62 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~--------~~----------~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~   62 (203)
                      ++.=+|+|+|+.++|||||..+|+..        ..          ..+....++.......+.+.+     ..+.++++
T Consensus        11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI   90 (709)
T 4fn5_A           11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI   90 (709)
T ss_dssp             GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred             HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence            56779999999999999999999621        11          112223333333444444432     35889999


Q ss_pred             eCCChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028792           63 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTA  127 (203)
Q Consensus        63 D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~  127 (203)
                      ||||+..|.......++-+|++|+|+|+...-......-|.. ....   +.|.++++||+|...
T Consensus        91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~-a~~~---~lp~i~~iNKiDr~~  151 (709)
T 4fn5_A           91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQ-ANKY---GVPRIVYVNKMDRQG  151 (709)
T ss_dssp             CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHHH---TCCEEEEEECSSSTT
T ss_pred             eCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHH-HHHc---CCCeEEEEccccccC
Confidence            999999999999999999999999999986433222223333 3222   689999999999753

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.46  E-value=4e-13  Score=104.45  Aligned_cols=103  Identities=11%  Similarity=0.119  Sum_probs=63.6

Q ss_pred             EEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHH
Q 028792           57 IKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETA  136 (203)
Q Consensus        57 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~  136 (203)
                      ..+.++||+|.....   ......+|.+++++|+...+....+...   +.     ..+.++++||+|+...........
T Consensus       148 ~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~---i~-----~~~~ivvlNK~Dl~~~~~~s~~~~  216 (337)
T 2qm8_A          148 FDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKG---IF-----ELADMIAVNKADDGDGERRASAAA  216 (337)
T ss_dssp             CCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTT---HH-----HHCSEEEEECCSTTCCHHHHHHHH
T ss_pred             CCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHH---Hh-----ccccEEEEEchhccCchhHHHHHH
Confidence            578899999964321   2235789999999998654321111111   11     134577889999754322222222


Q ss_pred             HHHHHH----------cCCCEEEEecCCCCCHHHHHHHHHHHHH
Q 028792          137 KAFADE----------IGIPFMETSAKSATNVEQAFMAMAASIK  170 (203)
Q Consensus       137 ~~~~~~----------~~~~~~~~Sa~~~~gi~~~~~~l~~~~~  170 (203)
                      .++...          +..+++.+||+++.|++++++.|.+...
T Consensus       217 ~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          217 SEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             HHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            333221          1457899999999999999999988764

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.43  E-value=4.9e-13  Score=102.46  Aligned_cols=96  Identities=18%  Similarity=0.177  Sum_probs=77.7

Q ss_pred             hhhhchhhhccccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccC-HHHHHHHHHHcC
Q 028792           67 QERFRTITSSYYRGAHGIIVVYDVTDQE-SFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVS-YETAKAFADEIG  144 (203)
Q Consensus        67 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~-~~~~~~~~~~~~  144 (203)
                      ++++..+.+.++.++|++++|+|+++++ ++..+..|+..+..   .+.|+++|+||+|+.+...+. .++..+++...+
T Consensus        66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g  142 (302)
T 2yv5_A           66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAG  142 (302)
T ss_dssp             CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTT
T ss_pred             CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCC
Confidence            4566777788999999999999999886 88878888876654   368999999999997543222 345566677778


Q ss_pred             CCEEEEecCCCCCHHHHHHHH
Q 028792          145 IPFMETSAKSATNVEQAFMAM  165 (203)
Q Consensus       145 ~~~~~~Sa~~~~gi~~~~~~l  165 (203)
                      .+++++||++|.|+++++..+
T Consensus       143 ~~~~~~SA~~g~gi~~L~~~l  163 (302)
T 2yv5_A          143 YDVLKVSAKTGEGIDELVDYL  163 (302)
T ss_dssp             CEEEECCTTTCTTHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHhhc
Confidence            999999999999999999885

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=99.43  E-value=7e-14  Score=99.92  Aligned_cols=105  Identities=10%  Similarity=-0.025  Sum_probs=70.2

Q ss_pred             CCChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHH----hhc-CCCCcEEEEEeCC-CCCCCcccCHHHHH
Q 028792           64 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEID----RYA-SENVNKLLVGNKC-DLTANKVVSYETAK  137 (203)
Q Consensus        64 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~----~~~-~~~~p~iiv~nK~-D~~~~~~~~~~~~~  137 (203)
                      .+|+..++.+|+.++.++|++|||+|.+|.+.++ .+..+..+.    ... ..+.|++|++||. |+.  ..++..++.
T Consensus       109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp--~Ams~~EI~  185 (227)
T 3l82_B          109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV--KRMPCFYLA  185 (227)
T ss_dssp             --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTS--CBCCHHHHH
T ss_pred             cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCcc--CCCCHHHHH
Confidence            3478888999999999999999999999886543 333222222    211 2478999999995 664  345666655


Q ss_pred             HHHHH----cCCCEEEEecCCCCCHHHHHHHHHHHHHH
Q 028792          138 AFADE----IGIPFMETSAKSATNVEQAFMAMAASIKN  171 (203)
Q Consensus       138 ~~~~~----~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~  171 (203)
                      +....    ..+.++.|||.+|+|+.+.++||.+.+..
T Consensus       186 e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~  223 (227)
T 3l82_B          186 HELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVES  223 (227)
T ss_dssp             HHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTT
T ss_pred             HHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHh
Confidence            44322    34678999999999999999999877643

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.40  E-value=1.1e-11  Score=97.79  Aligned_cols=87  Identities=20%  Similarity=0.188  Sum_probs=61.3

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCC-CCCCccccceeeEEEEEEECCe---------------EEEEEEEeCCChhh
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSY-LESYISTIGVDFKIRTVEQDGK---------------TIKLQIWDTAGQER   69 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~   69 (203)
                      ..-.++.++|++|+|||||+|.|.+... .....|+++.+.....+.+.+.               ...+.+||+||...
T Consensus        18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~   97 (392)
T 1ni3_A           18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK   97 (392)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence            3457899999999999999999998765 4444455555555555555541               13578999999533


Q ss_pred             -------hchhhhccccCCcEEEEEEeCCC
Q 028792           70 -------FRTITSSYYRGAHGIIVVYDVTD   92 (203)
Q Consensus        70 -------~~~~~~~~~~~~d~~i~v~d~~~   92 (203)
                             +.......+..+|++++|+|+.+
T Consensus        98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A           98 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence                   22233445688999999999863

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.38  E-value=5.2e-13  Score=105.11  Aligned_cols=89  Identities=17%  Similarity=0.151  Sum_probs=52.7

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCe---------------EEEEEEEeCCChhhh
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGK---------------TIKLQIWDTAGQERF   70 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~   70 (203)
                      ...++|+++|.||+|||||+|+|.+........++.+.+.....+.+++.               ...+.+||+||....
T Consensus        20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~   99 (396)
T 2ohf_A           20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG   99 (396)
T ss_dssp             SSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence            34589999999999999999999987664444455555555555555442               235899999997654


Q ss_pred             ch-------hhhccccCCcEEEEEEeCCChh
Q 028792           71 RT-------ITSSYYRGAHGIIVVYDVTDQE   94 (203)
Q Consensus        71 ~~-------~~~~~~~~~d~~i~v~d~~~~~   94 (203)
                      ..       .+...++.+|++++|+|+++.+
T Consensus       100 as~~~glg~~~l~~ir~aD~Il~VvD~~~~~  130 (396)
T 2ohf_A          100 AHNGQGLGNAFLSHISACDGIFHLTRAFEDD  130 (396)
T ss_dssp             -------CCHHHHHHHTSSSEEEEEEC----
T ss_pred             cchhhHHHHHHHHHHHhcCeEEEEEecCCCc
Confidence            33       3455678999999999998543

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=99.34  E-value=1.6e-12  Score=97.31  Aligned_cols=107  Identities=9%  Similarity=0.001  Sum_probs=75.2

Q ss_pred             CCChhhhchhhhccccCCcEEEEEEeCCChhhHH---HHHHHHHHHHhh-cCCCCcEEEEEeC-CCCCCCcccCHHHHHH
Q 028792           64 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFN---NVKQWLNEIDRY-ASENVNKLLVGNK-CDLTANKVVSYETAKA  138 (203)
Q Consensus        64 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~---~~~~~~~~l~~~-~~~~~p~iiv~nK-~D~~~~~~~~~~~~~~  138 (203)
                      .+|+...+..|+.++.++|++|||+|.+|++.++   ++.++...+... ...+.|++|++|| .|+.  ..++..++.+
T Consensus       194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp--~Ams~~EI~e  271 (312)
T 3l2o_B          194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV--KRMPCFYLAH  271 (312)
T ss_dssp             ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTS--CBCCHHHHHH
T ss_pred             CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCccccc--CCCCHHHHHH
Confidence            4577888999999999999999999999987644   222222223222 1247899999996 5774  3455555554


Q ss_pred             HHHH----cCCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 028792          139 FADE----IGIPFMETSAKSATNVEQAFMAMAASIKNR  172 (203)
Q Consensus       139 ~~~~----~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~  172 (203)
                      ....    ....++.|||.+|+|+.+.++||.+.+..+
T Consensus       272 ~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k  309 (312)
T 3l2o_B          272 ELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK  309 (312)
T ss_dssp             HTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC-
T ss_pred             HcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHhh
Confidence            4322    245689999999999999999999887543

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.01  E-value=1.1e-10  Score=91.83  Aligned_cols=140  Identities=14%  Similarity=0.185  Sum_probs=81.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC------CCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchh--------h
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADD------SYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI--------T   74 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~   74 (203)
                      .+|+++|.+|+|||||+|+|++.      .......+.++  .....+..+.   .+.++||||.......        .
T Consensus       163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT--~~~~~~~~~~---~~~liDtPG~~~~~~~~~~l~~~~l  237 (369)
T 3ec1_A          163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTT--LDMIEIPLES---GATLYDTPGIINHHQMAHFVDARDL  237 (369)
T ss_dssp             SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSS--CEEEEEECST---TCEEEECCSCCCCSSGGGGSCTTTH
T ss_pred             CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeE--EeeEEEEeCC---CeEEEeCCCcCcHHHHHHHHhHHHH
Confidence            47999999999999999999975      22222222222  3333444443   2689999995422211        1


Q ss_pred             hccc--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEec
Q 028792           75 SSYY--RGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSA  152 (203)
Q Consensus        75 ~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  152 (203)
                      ..++  ...+.++++++....--+..+..    +......+.|+++++||.|....... ......+.+..+..+.+.++
T Consensus       238 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----l~~l~~~~~~~~~v~~k~d~~~~~~~-~~~~~~~~~~~g~~l~p~~~  312 (369)
T 3ec1_A          238 KIITPKREIHPRVYQLNEGQTLFFGGLAR----LDYIKGGRRSFVCYMANELTVHRTKL-EKADSLYANQLGELLSPPSK  312 (369)
T ss_dssp             HHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEEEEG-GGHHHHHHHHBTTTBCSSCG
T ss_pred             HHHhcccccCceEEEEcCCceEEECCEEE----EEEccCCCceEEEEecCCcccccccH-HHHHHHHHHhcCCccCCCCc
Confidence            1122  66899999999742210000000    22223346899999999998654333 23344455666666666666


Q ss_pred             CCCCCH
Q 028792          153 KSATNV  158 (203)
Q Consensus       153 ~~~~gi  158 (203)
                      .+.+++
T Consensus       313 ~~~~~~  318 (369)
T 3ec1_A          313 RYAAEF  318 (369)
T ss_dssp             GGTTTC
T ss_pred             hhhhhc
Confidence            554443

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.00  E-value=8.7e-10  Score=87.58  Aligned_cols=141  Identities=15%  Similarity=0.215  Sum_probs=69.8

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCc----cccceeeEEEEEEECCeEEEEEEEeCCChhhh------------
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYI----STIGVDFKIRTVEQDGKTIKLQIWDTAGQERF------------   70 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~------------   70 (203)
                      ..++++|+|++|+|||||++.|.+..+.....    +..............+....+.++|++|....            
T Consensus        41 ei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~  120 (427)
T 2qag_B           41 FCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVE  120 (427)
T ss_dssp             CEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHH
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHH
Confidence            34789999999999999999999865432111    11111111111122222246889999874321            


Q ss_pred             --chhh----hc---------cccC--CcE-EEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccC
Q 028792           71 --RTIT----SS---------YYRG--AHG-IIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVS  132 (203)
Q Consensus        71 --~~~~----~~---------~~~~--~d~-~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~  132 (203)
                        ...+    ..         .+..  +|+ +.|+.|....-+..+    +..+.... .+.|+|+|+||+|.....+..
T Consensus       121 ~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D----ieilk~L~-~~~~vI~Vi~KtD~Lt~~E~~  195 (427)
T 2qag_B          121 FIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD----LVTMKKLD-SKVNIIPIIAKADAISKSELT  195 (427)
T ss_dssp             HHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH----HHHHHHTC-SCSEEEEEESCGGGSCHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH----HHHHHHHh-hCCCEEEEEcchhccchHHHH
Confidence              0011    00         1122  233 555666543322222    22233333 578999999999976543321


Q ss_pred             --HHHHHHHHHHcCCCEEEEec
Q 028792          133 --YETAKAFADEIGIPFMETSA  152 (203)
Q Consensus       133 --~~~~~~~~~~~~~~~~~~Sa  152 (203)
                        ...+.+.....+++++.+|.
T Consensus       196 ~l~~~I~~~L~~~gi~I~~is~  217 (427)
T 2qag_B          196 KFKIKITSELVSNGVQIYQFPT  217 (427)
T ss_dssp             HHHHHHHHHHBTTBCCCCCCC-
T ss_pred             HHHHHHHHHHHHcCCcEEecCC
Confidence              11122222334677777764

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.99  E-value=9.5e-10  Score=82.82  Aligned_cols=136  Identities=21%  Similarity=0.196  Sum_probs=72.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCC---------ccccceeeEEEEEEEC--CeEEEEEEEeCCChhhhc-----
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFADDSYLESY---------ISTIGVDFKIRTVEQD--GKTIKLQIWDTAGQERFR-----   71 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~---------~~~~~~~~~~~~~~~~--~~~~~~~i~D~~g~~~~~-----   71 (203)
                      .++++++|++|+|||||++.|.+...+..-         ..+..  .....+..+  +-...++++|++|.....     
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~--~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~   79 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVE--IKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENC   79 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCS--CCEEEESCC----CCEEEEECCCC--CCSBCTTC
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCccee--eeeeEEEeecCCCcCCceEEechhhhhhcccHHH
Confidence            589999999999999999999864322110         00110  011111112  112367899999732100     


Q ss_pred             --hh---------------------hhccccCCcEEEEEEeCCC-hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028792           72 --TI---------------------TSSYYRGAHGIIVVYDVTD-QESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTA  127 (203)
Q Consensus        72 --~~---------------------~~~~~~~~d~~i~v~d~~~-~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~  127 (203)
                        ..                     .+..+..+++.++++|... +-.-.+    ...+...... .++++|++|+|...
T Consensus        80 ~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD----~~~l~~L~~~-~~vI~Vi~K~D~lt  154 (270)
T 3sop_A           80 WEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD----LEFMKHLSKV-VNIIPVIAKADTMT  154 (270)
T ss_dssp             SHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH----HHHHHHHHTT-SEEEEEETTGGGSC
T ss_pred             HHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH----HHHHHHHHhc-CcEEEEEeccccCC
Confidence              00                     0112345688899999652 222111    2223333333 89999999999865


Q ss_pred             CcccC--HHHHHHHHHHcCCCEEEE
Q 028792          128 NKVVS--YETAKAFADEIGIPFMET  150 (203)
Q Consensus       128 ~~~~~--~~~~~~~~~~~~~~~~~~  150 (203)
                      ..+..  ...+......+++.+++.
T Consensus       155 ~~e~~~~k~~i~~~l~~~~i~i~~~  179 (270)
T 3sop_A          155 LEEKSEFKQRVRKELEVNGIEFYPQ  179 (270)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCSSC
T ss_pred             HHHHHHHHHHHHHHHHHcCccccCC
Confidence            43321  123344455667776653

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.98  E-value=2.5e-11  Score=95.41  Aligned_cols=136  Identities=10%  Similarity=0.110  Sum_probs=75.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCC-----CCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchh--------hh
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDSYL-----ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI--------TS   75 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~   75 (203)
                      .+|+++|.+|+|||||+|+|++....     .......+++.....+..+..   +.++||||.......        ..
T Consensus       161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~  237 (368)
T 3h2y_A          161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSLK  237 (368)
T ss_dssp             SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHHH
Confidence            57999999999999999999875211     101112222233334444432   779999995432211        11


Q ss_pred             cc--ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEec
Q 028792           76 SY--YRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSA  152 (203)
Q Consensus        76 ~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  152 (203)
                      .+  ....+.++++++......+..+..    +......+.|+++++||.|....... ......+.+..+..+.+.++
T Consensus       238 ~~~~~~~i~~~~~~l~~~~~~~~g~l~~----~d~l~~~~~~~~~v~nk~d~~~~~~~-~~~~~~~~~~~g~~l~p~~~  311 (368)
T 3h2y_A          238 LITPTKEIKPMVFQLNEEQTLFFSGLAR----FDYVSGGRRAFTCHFSNRLTIHRTKL-EKADELYKNHAGDLLSPPTP  311 (368)
T ss_dssp             HHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEEEEH-HHHHHHHHHHBTTTBCSSCH
T ss_pred             HhccccccCceEEEEcCCCEEEEcceEE----EEEecCCCceEEEEecCccccccccH-HHHHHHHHHHhCCccCCCch
Confidence            11  366788999998732110000000    12223346899999999998754332 23334455555655555444

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.96  E-value=1.3e-09  Score=85.55  Aligned_cols=96  Identities=24%  Similarity=0.369  Sum_probs=71.9

Q ss_pred             ChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHH----HHH
Q 028792           66 GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKA----FAD  141 (203)
Q Consensus        66 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~----~~~  141 (203)
                      ..++|......+...+|++++|+|+++++     ..|...+..+.. +.|+++|+||+|+.+.. ...+...+    ++.
T Consensus        55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~-~~p~ilV~NK~DL~~~~-~~~~~~~~~l~~~~~  127 (368)
T 3h2y_A           55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVG-NNKVLLVGNKADLIPKS-VKHDKVKHWMRYSAK  127 (368)
T ss_dssp             -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSS-SSCEEEEEECGGGSCTT-SCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhC-CCcEEEEEEChhcCCcc-cCHHHHHHHHHHHHH
Confidence            35678888888888999999999999864     345555555443 68999999999997543 23333333    356


Q ss_pred             HcCC---CEEEEecCCCCCHHHHHHHHHHH
Q 028792          142 EIGI---PFMETSAKSATNVEQAFMAMAAS  168 (203)
Q Consensus       142 ~~~~---~~~~~Sa~~~~gi~~~~~~l~~~  168 (203)
                      ..+.   .++.+||++|.|++++++.|.+.
T Consensus       128 ~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~  157 (368)
T 3h2y_A          128 QLGLKPEDVFLISAAKGQGIAELADAIEYY  157 (368)
T ss_dssp             HTTCCCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             HcCCCcccEEEEeCCCCcCHHHHHhhhhhh
Confidence            6676   79999999999999999998654

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=98.93  E-value=1.2e-09  Score=88.84  Aligned_cols=149  Identities=14%  Similarity=0.108  Sum_probs=82.9

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHh------cCCCC---C-CCccc-----------cceeeEEEE---------------E
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFA------DDSYL---E-SYIST-----------IGVDFKIRT---------------V   50 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~------~~~~~---~-~~~~~-----------~~~~~~~~~---------------~   50 (203)
                      ....|+|+|.+||||||++++|.      +.+..   . .+.+.           ....+....               .
T Consensus       100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~  179 (504)
T 2j37_W          100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF  179 (504)
T ss_dssp             --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence            45689999999999999999998      32210   0 00000           001111100               0


Q ss_pred             EECCeEEEEEEEeCCChhhhch-hh---hcc--ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcE-EEEEeCC
Q 028792           51 EQDGKTIKLQIWDTAGQERFRT-IT---SSY--YRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNK-LLVGNKC  123 (203)
Q Consensus        51 ~~~~~~~~~~i~D~~g~~~~~~-~~---~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~-iiv~nK~  123 (203)
                      ...+  +.+.|+||||...... ..   ...  ...+|.+++|+|+........   ....+...    .|+ ++|+||.
T Consensus       180 ~~~~--~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~---~a~~~~~~----~~i~gvVlNK~  250 (504)
T 2j37_W          180 KNEN--FEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEA---QAKAFKDK----VDVASVIVTKL  250 (504)
T ss_dssp             HHTT--CCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHH---HHHHHHHH----HCCCCEEEECT
T ss_pred             HHCC--CcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHH---HHHHHHhh----cCceEEEEeCC
Confidence            0022  5688999999653211 11   111  227899999999986543111   11222221    454 7899999


Q ss_pred             CCCCCcccCHHHHHHHHHHcCCCE------------------EEEecCCCCC-HHHHHHHHHHH
Q 028792          124 DLTANKVVSYETAKAFADEIGIPF------------------METSAKSATN-VEQAFMAMAAS  168 (203)
Q Consensus       124 D~~~~~~~~~~~~~~~~~~~~~~~------------------~~~Sa~~~~g-i~~~~~~l~~~  168 (203)
                      |......    .........++|+                  +.+|+..|.| +.++++++.+.
T Consensus       251 D~~~~~g----~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~  310 (504)
T 2j37_W          251 DGHAKGG----GALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL  310 (504)
T ss_dssp             TSCCCCT----HHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred             ccccchH----HHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence            9764321    1222333445544                  2368888988 88888888654

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.92  E-value=5.1e-10  Score=84.83  Aligned_cols=102  Identities=16%  Similarity=0.134  Sum_probs=69.9

Q ss_pred             EEeCCChh-hhchhhhccccCCcEEEEEEeCCChhhHH--HHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHH
Q 028792           61 IWDTAGQE-RFRTITSSYYRGAHGIIVVYDVTDQESFN--NVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAK  137 (203)
Q Consensus        61 i~D~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~  137 (203)
                      |-..||+. .........+..+|++++|+|+.++.+..  .+..++        .++|.++|+||+|+.+...  .+...
T Consensus         3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~~~~--~~~~~   72 (282)
T 1puj_A            3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKADAAV--TQQWK   72 (282)
T ss_dssp             ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSCHHH--HHHHH
T ss_pred             CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccCCHHH--HHHHH
Confidence            34577764 33445566789999999999999887643  233322        3689999999999975211  22234


Q ss_pred             HHHHHcCCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 028792          138 AFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR  172 (203)
Q Consensus       138 ~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~  172 (203)
                      ++.+..+.+++.+||.++.|+++++..+.+.+.+.
T Consensus        73 ~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~~  107 (282)
T 1puj_A           73 EHFENQGIRSLSINSVNGQGLNQIVPASKEILQEK  107 (282)
T ss_dssp             HHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred             HHHHhcCCcEEEEECCCcccHHHHHHHHHHHHHHH
Confidence            44555678999999999999999999988877643

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.87  E-value=1.4e-09  Score=85.53  Aligned_cols=97  Identities=22%  Similarity=0.342  Sum_probs=70.6

Q ss_pred             ChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHH----HHH
Q 028792           66 GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKA----FAD  141 (203)
Q Consensus        66 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~----~~~  141 (203)
                      .+++|......+...++++++|+|++++++     .|...+..... +.|+++|+||+|+.+.. ...+...+    ++.
T Consensus        57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~-~~piilV~NK~DLl~~~-~~~~~~~~~l~~~~~  129 (369)
T 3ec1_A           57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAA-DNPILLVGNKADLLPRS-VKYPKLLRWMRRMAE  129 (369)
T ss_dssp             --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCT-TSCEEEEEECGGGSCTT-CCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhC-CCCEEEEEEChhcCCCc-cCHHHHHHHHHHHHH
Confidence            467788888888899999999999999774     33333444333 68999999999997542 22333333    355


Q ss_pred             HcCC---CEEEEecCCCCCHHHHHHHHHHHH
Q 028792          142 EIGI---PFMETSAKSATNVEQAFMAMAASI  169 (203)
Q Consensus       142 ~~~~---~~~~~Sa~~~~gi~~~~~~l~~~~  169 (203)
                      ..+.   .++.+||++|.|++++++.+.+..
T Consensus       130 ~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~  160 (369)
T 3ec1_A          130 ELGLCPVDVCLVSAAKGIGMAKVMEAINRYR  160 (369)
T ss_dssp             TTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred             HcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence            5665   689999999999999999987654

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.83  E-value=2.7e-08  Score=78.96  Aligned_cols=155  Identities=15%  Similarity=0.160  Sum_probs=82.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-ccccceee--EEEEEEECCeEEEEEEEeCCChhhhc----hhh-hcccc
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFADDSYLESY-ISTIGVDF--KIRTVEQDGKTIKLQIWDTAGQERFR----TIT-SSYYR   79 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~i~D~~g~~~~~----~~~-~~~~~   79 (203)
                      ...++|+|++|+|||||+|.|.+-..+..- ....+.+.  ......... .-.+.++|++|.....    ... ..-+.
T Consensus        69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~-~~~ltv~D~~g~~~~~~~~~~~L~~~~L~  147 (413)
T 1tq4_A           69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPN-IPNVVFWDLPGIGSTNFPPDTYLEKMKFY  147 (413)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSS-CTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred             CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccc-cCCeeehHhhcccchHHHHHHHHHHcCCC
Confidence            347999999999999999999974332211 00000000  011111111 1147899999853211    111 11133


Q ss_pred             CCcEEEEEEeCC--ChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC-------CCcccCHHH----HHHHH----HH
Q 028792           80 GAHGIIVVYDVT--DQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLT-------ANKVVSYET----AKAFA----DE  142 (203)
Q Consensus        80 ~~d~~i~v~d~~--~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~-------~~~~~~~~~----~~~~~----~~  142 (203)
                      ..+..++ ++..  ..+..    .+...+..   .+.|+++|.||.|+.       .-.....+.    +.++.    ..
T Consensus       148 ~~~~~~~-lS~G~~~kqrv----~la~aL~~---~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~  219 (413)
T 1tq4_A          148 EYDFFII-ISATRFKKNDI----DIAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRE  219 (413)
T ss_dssp             GCSEEEE-EESSCCCHHHH----HHHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCeEE-eCCCCccHHHH----HHHHHHHh---cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHh
Confidence            4455554 7765  22221    12222222   358999999999863       111112222    33332    12


Q ss_pred             cC---CCEEEEec--CCCCCHHHHHHHHHHHHHH
Q 028792          143 IG---IPFMETSA--KSATNVEQAFMAMAASIKN  171 (203)
Q Consensus       143 ~~---~~~~~~Sa--~~~~gi~~~~~~l~~~~~~  171 (203)
                      .+   ..++.+|+  ..+.|++++.+.+.+.+.+
T Consensus       220 ~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpe  253 (413)
T 1tq4_A          220 NGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPI  253 (413)
T ss_dssp             TTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred             cCCCCCcEEEEecCcCCccCHHHHHHHHHHhCcc
Confidence            22   36888999  5666799999999876643

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.55  E-value=6.5e-08  Score=73.24  Aligned_cols=58  Identities=28%  Similarity=0.323  Sum_probs=36.0

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCC-CCccccceeeEEEEEEECCeEEEEEEEeCCChh
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLE-SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE   68 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~   68 (203)
                      ...++|+++|.||+|||||+|+|.+..... ...+.++...  ..+..+.   .+.++||||..
T Consensus       118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtpG~~  176 (282)
T 1puj_A          118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQ--QWVKVGK---ELELLDTPGIL  176 (282)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTSCCC--------------CCEEETT---TEEEEECCCCC
T ss_pred             CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeee--EEEEeCC---CEEEEECcCcC
Confidence            456899999999999999999999766322 2222222222  2233332   47899999953

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.54  E-value=3.6e-08  Score=73.88  Aligned_cols=56  Identities=20%  Similarity=0.289  Sum_probs=35.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChh
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE   68 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~   68 (203)
                      ++++++|.+|+|||||+|+|.+...... .++.+.+.....+..+.   .+.+|||||..
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtpG~~  155 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASSV-GAQPGITKGIQWFSLEN---GVKILDTPGIL  155 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECTT---SCEEESSCEEC
T ss_pred             hheEEeCCCCCCHHHHHHHHhccccccc-CCCCCCccceEEEEeCC---CEEEEECCCcc
Confidence            6899999999999999999997665322 12222222222333332   47899999964

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.53  E-value=1.9e-07  Score=74.63  Aligned_cols=91  Identities=20%  Similarity=0.147  Sum_probs=53.6

Q ss_pred             EEEEEEeCCChhhhchh----hh--ccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc
Q 028792           57 IKLQIWDTAGQERFRTI----TS--SYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKV  130 (203)
Q Consensus        57 ~~~~i~D~~g~~~~~~~----~~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~  130 (203)
                      +.+.|+||+|.......    ..  .....+|.+++|+|+...+....   ....+...   -.+..+|+||.|....  
T Consensus       183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~---~a~~f~~~---~~i~gVIlTKlD~~~~--  254 (443)
T 3dm5_A          183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYN---QALAFKEA---TPIGSIIVTKLDGSAK--  254 (443)
T ss_dssp             CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHH---HHHHHHHS---CTTEEEEEECCSSCSS--
T ss_pred             CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHH---HHHHHHhh---CCCeEEEEECCCCccc--
Confidence            56889999994322111    11  11235789999999976443222   11222221   2456789999997533  


Q ss_pred             cCHHHHHHHHHHcCCCEEEEecCCCCCHH
Q 028792          131 VSYETAKAFADEIGIPFMETSAKSATNVE  159 (203)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  159 (203)
                        .-.+.......++|+..++.  |++++
T Consensus       255 --gG~~ls~~~~~g~PI~fig~--Ge~vd  279 (443)
T 3dm5_A          255 --GGGALSAVAATGAPIKFIGT--GEKID  279 (443)
T ss_dssp             --HHHHHHHHHTTCCCEEEEEC--SSSTT
T ss_pred             --ccHHHHHHHHHCCCEEEEEc--CCChH
Confidence              23344555667888887775  66554

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=98.42  E-value=6.3e-07  Score=71.70  Aligned_cols=84  Identities=20%  Similarity=0.118  Sum_probs=48.6

Q ss_pred             EEEEEEeCCChhhhchh----h--hccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCC-c-EEEEEeCCCCCCC
Q 028792           57 IKLQIWDTAGQERFRTI----T--SSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENV-N-KLLVGNKCDLTAN  128 (203)
Q Consensus        57 ~~~~i~D~~g~~~~~~~----~--~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~-p-~iiv~nK~D~~~~  128 (203)
                      +.+.++||||.......    .  ...+..+|.+++|+|+.....   ....   +..+.. .. | ..+|+||.|....
T Consensus       181 ~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~---~~~~~~-~~~~i~gvVlnK~D~~~~  253 (432)
T 2v3c_C          181 ADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQ---AKAFKE-AVGEIGSIIVTKLDGSAK  253 (432)
T ss_dssp             CSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHH---HHHHHT-TSCSCEEEEEECSSSCST
T ss_pred             CCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHH---HHHHhh-cccCCeEEEEeCCCCccc
Confidence            56789999995432111    1  111236899999999875432   1111   222222 24 5 7889999997532


Q ss_pred             cccCHHHHHHHHHHcCCCEEEEe
Q 028792          129 KVVSYETAKAFADEIGIPFMETS  151 (203)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~S  151 (203)
                          ......+....+.++..++
T Consensus       254 ----~g~~l~~~~~~~~pi~~ig  272 (432)
T 2v3c_C          254 ----GGGALSAVAETKAPIKFIG  272 (432)
T ss_dssp             ----THHHHHHHHHSSCCEEEEC
T ss_pred             ----hHHHHHHHHHHCCCEEEee
Confidence                1223446667777776653

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=98.39  E-value=3.1e-07  Score=75.97  Aligned_cols=65  Identities=20%  Similarity=0.089  Sum_probs=39.9

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcc-ccceeeEEEEE--EE-CCeEEEEEEEeCCChhh
Q 028792            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYIS-TIGVDFKIRTV--EQ-DGKTIKLQIWDTAGQER   69 (203)
Q Consensus         5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~-~~~~~~~~~~~--~~-~~~~~~~~i~D~~g~~~   69 (203)
                      ....+.|+|+|.||+|||||+|+|++....-.... +.+.+......  .. ......+.++||||...
T Consensus        35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~  103 (592)
T 1f5n_A           35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD  103 (592)
T ss_dssp             CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred             cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence            34678999999999999999999998764211111 11211112111  11 11225688999999643

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.36  E-value=1.9e-07  Score=69.95  Aligned_cols=93  Identities=14%  Similarity=0.107  Sum_probs=61.1

Q ss_pred             CCChhh-hchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH
Q 028792           64 TAGQER-FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADE  142 (203)
Q Consensus        64 ~~g~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~  142 (203)
                      .||+.. ........+.++|++++|+|+.++.+....  .   +. ..  ++|.++|+||+|+.+...  .+...++.+.
T Consensus         4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~--~---l~-ll--~k~~iivlNK~DL~~~~~--~~~~~~~~~~   73 (262)
T 3cnl_A            4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAY--G---VD-FS--RKETIILLNKVDIADEKT--TKKWVEFFKK   73 (262)
T ss_dssp             -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCT--T---SC-CT--TSEEEEEEECGGGSCHHH--HHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcCh--H---HH-hc--CCCcEEEEECccCCCHHH--HHHHHHHHHH
Confidence            355432 223455677999999999999987653211  0   11 11  689999999999975321  2233445556


Q ss_pred             cCCCEEEEecCCCCCHHHHHHHHHH
Q 028792          143 IGIPFMETSAKSATNVEQAFMAMAA  167 (203)
Q Consensus       143 ~~~~~~~~Sa~~~~gi~~~~~~l~~  167 (203)
                      .+.++ .+||+++.|+++++..+..
T Consensus        74 ~g~~v-~iSa~~~~gi~~L~~~l~~   97 (262)
T 3cnl_A           74 QGKRV-ITTHKGEPRKVLLKKLSFD   97 (262)
T ss_dssp             TTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred             cCCeE-EEECCCCcCHHHHHHHHHH
Confidence            67888 9999999999999887644

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.34  E-value=1.5e-07  Score=71.93  Aligned_cols=91  Identities=11%  Similarity=0.142  Sum_probs=61.8

Q ss_pred             chhhhccccCCcEEEEEEeCCChhh-HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc--CHHHHHHHHHHcCCCE
Q 028792           71 RTITSSYYRGAHGIIVVYDVTDQES-FNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVV--SYETAKAFADEIGIPF  147 (203)
Q Consensus        71 ~~~~~~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~  147 (203)
                      ..+.+..+.++|.+++|+|+.+|.. ...+..++   ......++|.++|+||+|+.+....  ..+....+....+.++
T Consensus        77 ~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L---~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v  153 (307)
T 1t9h_A           77 NELIRPPICNVDQAVLVFSAVQPSFSTALLDRFL---VLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDV  153 (307)
T ss_dssp             CEETTTTEECCCEEEEEEESTTTTCCHHHHHHHH---HHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCE
T ss_pred             hhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHH---HHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeE
Confidence            3445557899999999999997764 32222232   2222346889999999999765321  1234445555668899


Q ss_pred             EEEecCCCCCHHHHHHH
Q 028792          148 METSAKSATNVEQAFMA  164 (203)
Q Consensus       148 ~~~Sa~~~~gi~~~~~~  164 (203)
                      +.+||.++.|+++++..
T Consensus       154 ~~~sa~~~~g~~~L~~~  170 (307)
T 1t9h_A          154 YLTSSKDQDSLADIIPH  170 (307)
T ss_dssp             EECCHHHHTTCTTTGGG
T ss_pred             EEEecCCCCCHHHHHhh
Confidence            99999999888776654

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.32  E-value=1.7e-07  Score=74.71  Aligned_cols=91  Identities=16%  Similarity=0.116  Sum_probs=53.6

Q ss_pred             EEEEEEeCCChhh--hch----hhhcc--ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 028792           57 IKLQIWDTAGQER--FRT----ITSSY--YRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN  128 (203)
Q Consensus        57 ~~~~i~D~~g~~~--~~~----~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~  128 (203)
                      ..+.++||||...  ...    ....+  ....+.+++|+|+...+.....   ...+...   -.+..+|+||.|... 
T Consensus       180 ~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~---a~~f~~~---~~~~gVIlTKlD~~a-  252 (433)
T 3kl4_A          180 MDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDL---ASRFHQA---SPIGSVIITKMDGTA-  252 (433)
T ss_dssp             CSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHH---HHHHHHH---CSSEEEEEECGGGCS-
T ss_pred             CCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHH---HHHHhcc---cCCcEEEEecccccc-
Confidence            5678999999533  111    11111  1246899999999764432222   2222222   246688999999653 


Q ss_pred             cccCHHHHHHHHHHcCCCEEEEecCCCCCHH
Q 028792          129 KVVSYETAKAFADEIGIPFMETSAKSATNVE  159 (203)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  159 (203)
                         ..-.+.......+.|+..++.  |++++
T Consensus       253 ---~~G~als~~~~~g~Pi~fig~--Ge~v~  278 (433)
T 3kl4_A          253 ---KGGGALSAVVATGATIKFIGT--GEKID  278 (433)
T ss_dssp             ---CHHHHHHHHHHHTCEEEEEEC--CSSSS
T ss_pred             ---cchHHHHHHHHHCCCEEEEEC--CCChH
Confidence               233455556667889887775  66653

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.23  E-value=3.1e-06  Score=70.64  Aligned_cols=26  Identities=27%  Similarity=0.356  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCC
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDSYL   34 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~~~   34 (203)
                      ..|+|+|++|||||||++.|.+-..+
T Consensus        46 p~iaIvG~nGsGKSTLL~~I~Gl~~P   71 (608)
T 3szr_A           46 PAIAVIGDQSSGKSSVLEALSGVALP   71 (608)
T ss_dssp             CCEECCCCTTSCHHHHHHHHHSCC--
T ss_pred             CeEEEECCCCChHHHHHHHHhCCCCC
Confidence            45999999999999999999986433

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=98.20  E-value=4.3e-06  Score=63.67  Aligned_cols=91  Identities=14%  Similarity=0.137  Sum_probs=55.0

Q ss_pred             EEEEEEeCCChhh--hch-hhh-----ccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCC
Q 028792           57 IKLQIWDTAGQER--FRT-ITS-----SYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVN-KLLVGNKCDLTA  127 (203)
Q Consensus        57 ~~~~i~D~~g~~~--~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~iiv~nK~D~~~  127 (203)
                      +.+.++||||...  ... +..     .....+|.+++|+|+.....   .......+..    ..+ ..+|+||.|...
T Consensus       181 ~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~~----~~~i~gvVlnk~D~~~  253 (297)
T 1j8m_F          181 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK---AYDLASKFNQ----ASKIGTIIITKMDGTA  253 (297)
T ss_dssp             CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---HHHHHHHHHH----TCTTEEEEEECGGGCT
T ss_pred             CCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHH---HHHHHHHHHh----hCCCCEEEEeCCCCCc
Confidence            5688999999765  221 111     12346899999999864322   1111222222    244 678899999643


Q ss_pred             CcccCHHHHHHHHHHcCCCEEEEecCCCCCHHH
Q 028792          128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQ  160 (203)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  160 (203)
                      .    ...+.......++++..++  .|+++++
T Consensus       254 ~----~g~~~~~~~~~~~pi~~i~--~Ge~v~d  280 (297)
T 1j8m_F          254 K----GGGALSAVAATGATIKFIG--TGEKIDE  280 (297)
T ss_dssp             T----HHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred             c----hHHHHHHHHHHCcCEEEEe--CCCChhh
Confidence            2    3345566777788888776  4666654

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=98.05  E-value=1.9e-05  Score=61.48  Aligned_cols=86  Identities=19%  Similarity=0.216  Sum_probs=55.5

Q ss_pred             ccccCCcEEEEEEeCCChhh-HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc-CHHHHHHHHHHcCCCEEEEecC
Q 028792           76 SYYRGAHGIIVVYDVTDQES-FNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVV-SYETAKAFADEIGIPFMETSAK  153 (203)
Q Consensus        76 ~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~  153 (203)
                      ....++|.+++|.+. +|.. ...+..++.....   .++|.+||+||+|+.+.... ..+.........+.+++.+||.
T Consensus       126 ~i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~---~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~  201 (358)
T 2rcn_A          126 PIAANIDQIVIVSAI-LPELSLNIIDRYLVGCET---LQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSH  201 (358)
T ss_dssp             EEEECCCEEEEEEES-TTTCCHHHHHHHHHHHHH---HTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTT
T ss_pred             HHHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecC
Confidence            346889999988665 4543 3323333322222   25788999999999754321 0122333445668899999999


Q ss_pred             CCCCHHHHHHHH
Q 028792          154 SATNVEQAFMAM  165 (203)
Q Consensus       154 ~~~gi~~~~~~l  165 (203)
                      ++.|++++...+
T Consensus       202 ~~~gl~~L~~~~  213 (358)
T 2rcn_A          202 TQDGLKPLEEAL  213 (358)
T ss_dssp             TTBTHHHHHHHH
T ss_pred             CCcCHHHHHHhc
Confidence            999999887653

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=97.96  E-value=1.1e-05  Score=62.26  Aligned_cols=91  Identities=14%  Similarity=0.113  Sum_probs=50.9

Q ss_pred             EEEEEeCCChhhhchhh----hc--cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc
Q 028792           58 KLQIWDTAGQERFRTIT----SS--YYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVV  131 (203)
Q Consensus        58 ~~~i~D~~g~~~~~~~~----~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~  131 (203)
                      .+.++|++|..+.....    ..  -.-..|-.++++|+.....   +......+....   ....+++||.|....   
T Consensus       213 d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~---~~~~~~~~~~~~---~it~iilTKlD~~a~---  283 (328)
T 3e70_C          213 DVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNA---IVEQARQFNEAV---KIDGIILTKLDADAR---  283 (328)
T ss_dssp             SEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTH---HHHHHHHHHHHS---CCCEEEEECGGGCSC---
T ss_pred             hhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHH---HHHHHHHHHHhc---CCCEEEEeCcCCccc---
Confidence            35679999854322111    00  1123688899999765432   222222232221   234778999995322   


Q ss_pred             CHHHHHHHHHHcCCCEEEEecCCCCCHHH
Q 028792          132 SYETAKAFADEIGIPFMETSAKSATNVEQ  160 (203)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  160 (203)
                       .-.+.......+.|+..++  +|+++++
T Consensus       284 -~G~~l~~~~~~~~pi~~i~--~Ge~v~d  309 (328)
T 3e70_C          284 -GGAALSISYVIDAPILFVG--VGQGYDD  309 (328)
T ss_dssp             -CHHHHHHHHHHTCCEEEEE--CSSSTTC
T ss_pred             -hhHHHHHHHHHCCCEEEEe--CCCCccc
Confidence             2334566677788888877  6666654

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=97.80  E-value=2.7e-05  Score=62.36  Aligned_cols=25  Identities=20%  Similarity=0.158  Sum_probs=22.2

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhc
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      ....-|.|+|++++|||+|+|+|++
T Consensus        65 ~~v~vVsV~G~~~~GKStLLN~llg   89 (447)
T 3q5d_A           65 KEVVAVSVAGAFRKGKSFLMDFMLR   89 (447)
T ss_dssp             SBEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CceEEEEEECCCCCcHHHHHHHHhh
Confidence            4567789999999999999999985

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=97.78  E-value=1.6e-06  Score=70.23  Aligned_cols=110  Identities=11%  Similarity=0.150  Sum_probs=58.8

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhh--hchhh--------h
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER--FRTIT--------S   75 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--~~~~~--------~   75 (203)
                      ...+.|+++|.+|+||||+.++|........ .++.............+......+||..|...  ....+        .
T Consensus        37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~-~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~  115 (469)
T 1bif_A           37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIG-VPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR  115 (469)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHTT-CCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHhccC-CCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence            3457899999999999999999975321000 11111000000000011112235788888632  22222        4


Q ss_pred             ccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEE
Q 028792           76 SYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG  120 (203)
Q Consensus        76 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~  120 (203)
                      .++...++.++|+|.++. +......|+..+...   +.+++++-
T Consensus       116 ~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~---~~~vv~l~  156 (469)
T 1bif_A          116 KFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN---GYKTFFVE  156 (469)
T ss_dssp             HHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH---TCEEEEEE
T ss_pred             HHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc---CCcEEEEE
Confidence            455567888999999986 444445565555443   33444443

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=97.68  E-value=6.2e-05  Score=53.70  Aligned_cols=85  Identities=15%  Similarity=0.085  Sum_probs=55.0

Q ss_pred             EEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhc--CCCCcEEEEEeCCCCCCCcccCHH
Q 028792           57 IKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA--SENVNKLLVGNKCDLTANKVVSYE  134 (203)
Q Consensus        57 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~~p~iiv~nK~D~~~~~~~~~~  134 (203)
                      +.+.++|+|+..  .......+..+|.+++++..+...  ..+...++.+....  ..+.++.+|+|+.|....  . ..
T Consensus        76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~--~-~~  148 (206)
T 4dzz_A           76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMAT--M-LN  148 (206)
T ss_dssp             SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEE--E-EH
T ss_pred             CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCch--H-HH
Confidence            567899999854  334455677799999999876543  55666666665443  234677899999985321  2 23


Q ss_pred             HHHHHHHHcCCCEE
Q 028792          135 TAKAFADEIGIPFM  148 (203)
Q Consensus       135 ~~~~~~~~~~~~~~  148 (203)
                      +..++.+..+.+++
T Consensus       149 ~~~~~l~~~~~~vl  162 (206)
T 4dzz_A          149 VLKESIKDTGVKAF  162 (206)
T ss_dssp             HHHHHHHHHTCCBC
T ss_pred             HHHHHHHHcCCcee
Confidence            44555555665555

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.58  E-value=3.8e-05  Score=53.94  Aligned_cols=23  Identities=30%  Similarity=0.768  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~   31 (203)
                      ++++++|++|+|||||++.+.+.
T Consensus         1 ~~i~l~G~nGsGKTTLl~~l~g~   23 (178)
T 1ye8_A            1 MKIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            47899999999999999998753

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.44  E-value=5e-05  Score=57.97  Aligned_cols=23  Identities=39%  Similarity=0.580  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~   32 (203)
                      .++|+|++|+|||||+|.|.+..
T Consensus       175 ~~~lvG~sG~GKSTLln~L~g~~  197 (307)
T 1t9h_A          175 TTVFAGQSGVGKSSLLNAISPEL  197 (307)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC--
T ss_pred             EEEEECCCCCCHHHHHHHhcccc
Confidence            68999999999999999998654

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.44  E-value=6.8e-05  Score=52.63  Aligned_cols=22  Identities=27%  Similarity=0.543  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~   31 (203)
                      -++|+|++|||||||++.|...
T Consensus         7 ~i~i~GpsGsGKSTL~~~L~~~   28 (180)
T 1kgd_A            7 TLVLLGAHGVGRRHIKNTLITK   28 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            5899999999999999999863

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=97.41  E-value=0.0028  Score=50.71  Aligned_cols=83  Identities=16%  Similarity=0.088  Sum_probs=44.6

Q ss_pred             EEEEEEeCCChhhhchh-hh-----ccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCc
Q 028792           57 IKLQIWDTAGQERFRTI-TS-----SYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVN-KLLVGNKCDLTANK  129 (203)
Q Consensus        57 ~~~~i~D~~g~~~~~~~-~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~iiv~nK~D~~~~~  129 (203)
                      +.+.|+||||....... ..     ..+..++.+++|+|+......   ......+..    ..+ .-+|+||.|.....
T Consensus       184 ~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~---~~~~~~f~~----~l~i~gvVlnK~D~~~~~  256 (433)
T 2xxa_A          184 YDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDA---ANTAKAFNE----ALPLTGVVLTKVDGDARG  256 (433)
T ss_dssp             CSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTH---HHHHHHHHH----HSCCCCEEEECTTSSSCC
T ss_pred             CCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHH---HHHHHHHhc----cCCCeEEEEecCCCCccH
Confidence            56889999995433211 11     123468899999998754322   111222221    123 34689999974322


Q ss_pred             ccCHHHHHHHHHHcCCCEEEE
Q 028792          130 VVSYETAKAFADEIGIPFMET  150 (203)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~  150 (203)
                          ..+.......+.++..+
T Consensus       257 ----g~~l~i~~~~~~Pi~~i  273 (433)
T 2xxa_A          257 ----GAALSIRHITGKPIKFL  273 (433)
T ss_dssp             ----THHHHHHHHHCCCEEEE
T ss_pred             ----HHHHHHHHHHCCCeEEE
Confidence                12334455556654433

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.40  E-value=7.8e-05  Score=53.21  Aligned_cols=21  Identities=43%  Similarity=0.646  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028792           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~   30 (203)
                      .++|+|++|||||||++.|.+
T Consensus         6 ~i~lvGpsGaGKSTLl~~L~~   26 (198)
T 1lvg_A            6 PVVLSGPSGAGKSTLLKKLFQ   26 (198)
T ss_dssp             CEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            589999999999999999975

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.36  E-value=0.0004  Score=52.93  Aligned_cols=22  Identities=45%  Similarity=0.680  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~   32 (203)
                      .++++|++|+|||||+|.|. ..
T Consensus       167 i~~l~G~sG~GKSTLln~l~-~~  188 (302)
T 2yv5_A          167 ICILAGPSGVGKSSILSRLT-GE  188 (302)
T ss_dssp             EEEEECSTTSSHHHHHHHHH-SC
T ss_pred             EEEEECCCCCCHHHHHHHHH-Hh
Confidence            57899999999999999998 43

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.35  E-value=2.7e-05  Score=55.08  Aligned_cols=21  Identities=38%  Similarity=0.675  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 028792           11 LLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        11 i~i~G~~~~GKSsli~~l~~~   31 (203)
                      |+|+||+|||||||+++|...
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999853

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.34  E-value=0.00011  Score=51.83  Aligned_cols=22  Identities=41%  Similarity=0.507  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~   31 (203)
                      .|+++|++|||||||++.|.+.
T Consensus        11 ~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A           11 ILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             EEEEEECTTSCHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            5899999999999999999875

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.32  E-value=0.00016  Score=50.33  Aligned_cols=30  Identities=30%  Similarity=0.355  Sum_probs=22.1

Q ss_pred             CCCCCceeeEEEEEcCCCCcHHHHHHHHhc
Q 028792            1 MNNEYDYLFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         1 ~~~~~~~~~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      |+.+...-..|+++|++||||||+.+.|..
T Consensus         1 m~~~~~~g~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            1 MSTTNHDHHIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             --CCCTTSEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CCccCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence            333333345699999999999999999864

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.30  E-value=0.00012  Score=52.15  Aligned_cols=22  Identities=23%  Similarity=0.442  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~   31 (203)
                      -++++|++|||||||++.|.+.
T Consensus         9 ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            9 LFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHhh
Confidence            4889999999999999999864

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=97.27  E-value=0.00013  Score=50.73  Aligned_cols=20  Identities=40%  Similarity=0.582  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 028792           10 KLLLIGDSGVGKSCLLLRFA   29 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~   29 (203)
                      -++++|++|||||||++.+.
T Consensus        11 i~~l~G~nGsGKSTl~~~~~   30 (171)
T 4gp7_A           11 LVVLIGSSGSGKSTFAKKHF   30 (171)
T ss_dssp             EEEEECCTTSCHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHc
Confidence            47899999999999999654

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.25  E-value=0.00014  Score=52.72  Aligned_cols=23  Identities=26%  Similarity=0.401  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~   32 (203)
                      -++|+|++|||||||++.|.+..
T Consensus        18 ii~l~GpsGsGKSTLlk~L~g~~   40 (219)
T 1s96_A           18 LYIVSAPSGAGKSSLIQALLKTQ   40 (219)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhccC
Confidence            57899999999999999998643

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.24  E-value=0.00015  Score=52.06  Aligned_cols=22  Identities=32%  Similarity=0.465  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~   31 (203)
                      -++|+|++|||||||++.|.+-
T Consensus        22 i~~l~GpnGsGKSTLl~~l~gl   43 (207)
T 1znw_A           22 VVVLSGPSAVGKSTVVRCLRER   43 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            3789999999999999999864

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.22  E-value=0.00018  Score=51.22  Aligned_cols=23  Identities=39%  Similarity=0.560  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~   31 (203)
                      --|+|+|++|+|||||++.|...
T Consensus        20 ~~ivl~GPSGaGKsTL~~~L~~~   42 (197)
T 3ney_A           20 KTLVLIGASGVGRSHIKNALLSQ   42 (197)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECcCCCCHHHHHHHHHhh
Confidence            35789999999999999999853

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.21  E-value=0.00017  Score=52.30  Aligned_cols=23  Identities=35%  Similarity=0.653  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~   32 (203)
                      .++|+|++|+|||||++.|.+..
T Consensus        25 ~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           25 PLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            47899999999999999998643

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.19  E-value=0.0002  Score=51.39  Aligned_cols=23  Identities=35%  Similarity=0.466  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~   32 (203)
                      -|+|+|++|||||||++.|....
T Consensus        10 ~i~l~GpsGsGKsTl~~~L~~~~   32 (208)
T 3tau_A           10 LIVLSGPSGVGKGTVREAVFKDP   32 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHST
T ss_pred             EEEEECcCCCCHHHHHHHHHhhC
Confidence            48899999999999999998643

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.17  E-value=0.0002  Score=51.42  Aligned_cols=24  Identities=33%  Similarity=0.249  Sum_probs=21.0

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhc
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      .-..|+|+|++|||||||++.|.+
T Consensus        21 ~g~~v~I~G~sGsGKSTl~~~l~~   44 (208)
T 3c8u_A           21 GRQLVALSGAPGSGKSTLSNPLAA   44 (208)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999999875

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.16  E-value=0.00027  Score=49.14  Aligned_cols=22  Identities=36%  Similarity=0.413  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      ..|++.|+|||||||+.+.|..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            4689999999999999999986

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=97.16  E-value=0.00022  Score=52.34  Aligned_cols=23  Identities=30%  Similarity=0.336  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~   32 (203)
                      -++++|+.|||||||++.+.+-.
T Consensus        33 ~~~iiG~nGsGKSTLl~~l~Gl~   55 (235)
T 3tif_A           33 FVSIMGPSGSGKSTMLNIIGCLD   55 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            37899999999999999998743

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.15  E-value=0.00022  Score=48.99  Aligned_cols=23  Identities=30%  Similarity=0.398  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~   32 (203)
                      -++++|+.|+|||||++.|.+..
T Consensus        35 ~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           35 MVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            47899999999999999998644

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.14  E-value=0.00024  Score=50.76  Aligned_cols=22  Identities=36%  Similarity=0.557  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      .-|+|+|++|||||||++.|..
T Consensus        13 ~~i~l~G~sGsGKsTl~~~L~~   34 (204)
T 2qor_A           13 PPLVVCGPSGVGKGTLIKKVLS   34 (204)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4589999999999999999975

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.13  E-value=0.00027  Score=48.75  Aligned_cols=20  Identities=30%  Similarity=0.353  Sum_probs=18.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHH
Q 028792            9 FKLLLIGDSGVGKSCLLLRF   28 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l   28 (203)
                      +-|+|+|++||||||+.+.|
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            46899999999999999999

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.11  E-value=0.00027  Score=49.79  Aligned_cols=21  Identities=38%  Similarity=0.561  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028792           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~   30 (203)
                      -++++|++|||||||++.|..
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            478999999999999999975

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=97.11  E-value=0.00032  Score=49.81  Aligned_cols=31  Identities=23%  Similarity=0.225  Sum_probs=23.2

Q ss_pred             CCCCCceeeEEEEEcCCCCcHHHHHHHHhcC
Q 028792            1 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus         1 ~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~   31 (203)
                      |.+...+...|+|+|++||||||+.+.|...
T Consensus         1 ~~~~~~~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            1 MGHEAKHPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             -----CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CCCcccCceEEEEECCCCCCHHHHHHHHHHC
Confidence            4455556788999999999999999999764

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=97.11  E-value=0.00026  Score=51.54  Aligned_cols=23  Identities=39%  Similarity=0.427  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~   32 (203)
                      -++++|+.|+|||||++.+.+-.
T Consensus        32 ~~~iiG~nGsGKSTLl~~l~Gl~   54 (224)
T 2pcj_A           32 FVSIIGASGSGKSTLLYILGLLD   54 (224)
T ss_dssp             EEEEEECTTSCHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            36899999999999999998743

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.10  E-value=0.00027  Score=48.89  Aligned_cols=23  Identities=30%  Similarity=0.524  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~   31 (203)
                      ..|+++|++||||||+.+.|...
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~~   27 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQQ   27 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            46999999999999999998753

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=97.10  E-value=0.00029  Score=50.72  Aligned_cols=22  Identities=23%  Similarity=0.481  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      ++|+|+|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            1 MNIVLMGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999853

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.09  E-value=0.00028  Score=54.97  Aligned_cols=24  Identities=38%  Similarity=0.441  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDSY   33 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~~   33 (203)
                      .++|+|++|+|||||+|.|.+...
T Consensus       217 ~~~lvG~sG~GKSTLln~L~g~~~  240 (358)
T 2rcn_A          217 ISIFAGQSGVGKSSLLNALLGLQN  240 (358)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred             EEEEECCCCccHHHHHHHHhcccc
Confidence            579999999999999999997553

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=97.09  E-value=0.0003  Score=50.65  Aligned_cols=22  Identities=32%  Similarity=0.513  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      ++|+|+|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            1 MNLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999853

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.08  E-value=0.00028  Score=48.67  Aligned_cols=21  Identities=19%  Similarity=0.233  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028792           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~   30 (203)
                      .|+|+|++||||||+.+.|..
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~   23 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSK   23 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999864

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=97.08  E-value=0.00033  Score=50.32  Aligned_cols=22  Identities=32%  Similarity=0.569  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      +.|+|+|+|||||+|....|..
T Consensus         1 M~Iil~GpPGsGKgTqa~~La~   22 (206)
T 3sr0_A            1 MILVFLGPPGAGKGTQAKRLAK   22 (206)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999864

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.07  E-value=0.00027  Score=50.32  Aligned_cols=24  Identities=38%  Similarity=0.601  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCC
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~   32 (203)
                      ..|+|+|++||||||+++.|....
T Consensus         7 ~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            7 LLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhh
Confidence            368999999999999999997643

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=97.07  E-value=0.00032  Score=51.65  Aligned_cols=23  Identities=35%  Similarity=0.447  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~   32 (203)
                      -++++|++|+|||||++.+.+-.
T Consensus        26 ~~~liG~nGsGKSTLl~~l~Gl~   48 (240)
T 2onk_A           26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998743

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.06  E-value=0.0003  Score=50.10  Aligned_cols=22  Identities=32%  Similarity=0.508  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      -.|+|+|++|||||||++.|.+
T Consensus        30 ~~i~l~G~~GsGKSTl~~~L~~   51 (200)
T 4eun_A           30 RHVVVMGVSGSGKTTIAHGVAD   51 (200)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3589999999999999999864

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.05  E-value=0.00035  Score=51.44  Aligned_cols=21  Identities=29%  Similarity=0.624  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 028792            9 FKLLLIGDSGVGKSCLLLRFA   29 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~   29 (203)
                      ..|+|+|++|||||||++.|.
T Consensus        28 ~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           28 LRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            469999999999999999998

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=97.05  E-value=0.00033  Score=50.62  Aligned_cols=23  Identities=26%  Similarity=0.394  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~   32 (203)
                      .++++|+.|+|||||++.|.+-.
T Consensus        37 ~~~iiG~NGsGKSTLlk~l~Gl~   59 (214)
T 1sgw_A           37 VVNFHGPNGIGKTTLLKTISTYL   59 (214)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            36899999999999999998743

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=97.05  E-value=0.00033  Score=52.65  Aligned_cols=23  Identities=35%  Similarity=0.524  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~   32 (203)
                      -++|+|++|||||||++.|.+-.
T Consensus        36 ~~~iiGpnGsGKSTLl~~l~Gl~   58 (275)
T 3gfo_A           36 VTAILGGNGVGKSTLFQNFNGIL   58 (275)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            36899999999999999998743

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=97.04  E-value=0.00034  Score=52.22  Aligned_cols=23  Identities=35%  Similarity=0.381  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~   32 (203)
                      -++++|+.|||||||++.+.+-.
T Consensus        34 ~~~liG~nGsGKSTLlk~l~Gl~   56 (262)
T 1b0u_A           34 VISIIGSSGSGKSTFLRCINFLE   56 (262)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            36899999999999999998743

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=97.03  E-value=0.00047  Score=49.30  Aligned_cols=24  Identities=17%  Similarity=0.005  Sum_probs=21.1

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhc
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      +...|+|.|.+||||||+.+.|..
T Consensus         9 ~~~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A            9 KGKFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred             cCCEEEEEcCCCCCHHHHHHHHHH
Confidence            446799999999999999999864

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=97.02  E-value=0.00035  Score=51.31  Aligned_cols=23  Identities=30%  Similarity=0.518  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~   32 (203)
                      .++++|+.|+|||||++.|.+-.
T Consensus        33 ~~~i~G~nGsGKSTLl~~l~Gl~   55 (237)
T 2cbz_A           33 LVAVVGQVGCGKSSLLSALLAEM   55 (237)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998743

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.01  E-value=0.00038  Score=48.41  Aligned_cols=22  Identities=27%  Similarity=0.366  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      .-|+++|++||||||+.+.|..
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~   25 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3589999999999999999975

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=97.00  E-value=0.00037  Score=51.82  Aligned_cols=23  Identities=35%  Similarity=0.416  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~   32 (203)
                      -++++|+.|+|||||++.+.+-.
T Consensus        35 ~~~liG~nGsGKSTLlk~l~Gl~   57 (257)
T 1g6h_A           35 VTLIIGPNGSGKSTLINVITGFL   57 (257)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998744

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.00  E-value=0.00029  Score=49.21  Aligned_cols=23  Identities=30%  Similarity=0.460  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~   31 (203)
                      -.++++|++|+|||||++.+.+.
T Consensus        39 ~~~~l~G~~G~GKTtL~~~i~~~   61 (180)
T 3ec2_A           39 KGLTFVGSPGVGKTHLAVATLKA   61 (180)
T ss_dssp             CEEEECCSSSSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            45899999999999999998753

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=96.99  E-value=0.0004  Score=50.73  Aligned_cols=23  Identities=30%  Similarity=0.559  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~   32 (203)
                      .++++|+.|+|||||++.+.+-.
T Consensus        36 ~~~i~G~nGsGKSTLl~~l~Gl~   58 (229)
T 2pze_A           36 LLAVAGSTGAGKTSLLMMIMGEL   58 (229)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998753

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=96.99  E-value=0.00035  Score=49.48  Aligned_cols=21  Identities=33%  Similarity=0.699  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028792           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~   30 (203)
                      .++++|++|+|||||++.+.+
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g   23 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHh
Confidence            478999999999999999875

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=96.99  E-value=0.0004  Score=51.83  Aligned_cols=23  Identities=35%  Similarity=0.413  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~   32 (203)
                      -++++|+.|+|||||++.|.+-.
T Consensus        52 i~~liG~NGsGKSTLlk~l~Gl~   74 (263)
T 2olj_A           52 VVVVIGPSGSGKSTFLRCLNLLE   74 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Confidence            47899999999999999998743

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=96.99  E-value=0.0004  Score=51.17  Aligned_cols=23  Identities=26%  Similarity=0.283  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~   32 (203)
                      .++++|+.|+|||||++.|.+-.
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~Gl~   52 (243)
T 1mv5_A           30 IIAFAGPSGGGKSTIFSLLERFY   52 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998643

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.98  E-value=0.00041  Score=51.06  Aligned_cols=23  Identities=35%  Similarity=0.430  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~   32 (203)
                      .++++|+.|+|||||++.|.+-.
T Consensus        34 ~~~l~G~nGsGKSTLl~~l~Gl~   56 (240)
T 1ji0_A           34 IVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998743

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=96.98  E-value=0.00037  Score=51.97  Aligned_cols=21  Identities=33%  Similarity=0.572  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028792           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~   30 (203)
                      .++|+|++|||||||++.+.+
T Consensus        27 ~v~i~Gp~GsGKSTll~~l~g   47 (261)
T 2eyu_A           27 LILVTGPTGSGKSTTIASMID   47 (261)
T ss_dssp             EEEEECSTTCSHHHHHHHHHH
T ss_pred             EEEEECCCCccHHHHHHHHHH
Confidence            589999999999999999875

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=96.98  E-value=0.00041  Score=51.29  Aligned_cols=23  Identities=30%  Similarity=0.301  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~   32 (203)
                      .++|+|+.|+|||||++.|.+-.
T Consensus        37 ~~~i~G~nGsGKSTLl~~l~Gl~   59 (247)
T 2ff7_A           37 VIGIVGRSGSGKSTLTKLIQRFY   59 (247)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998753

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=96.97  E-value=0.00057  Score=51.09  Aligned_cols=23  Identities=35%  Similarity=0.470  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~   32 (203)
                      .++++|++|||||||++.+.+-.
T Consensus        39 ~~~liG~nGsGKSTLl~~l~Gl~   61 (266)
T 4g1u_C           39 MVAIIGPNGAGKSTLLRLLTGYL   61 (266)
T ss_dssp             EEEEECCTTSCHHHHHHHHTSSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            36899999999999999998743

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.97  E-value=0.00042  Score=51.49  Aligned_cols=23  Identities=30%  Similarity=0.323  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~   32 (203)
                      -++|+|+.|+|||||++.|.+-.
T Consensus        43 i~~l~G~NGsGKSTLlk~l~Gl~   65 (256)
T 1vpl_A           43 IFGLIGPNGAGKTTTLRIISTLI   65 (256)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998743

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=96.97  E-value=0.00046  Score=48.97  Aligned_cols=21  Identities=29%  Similarity=0.555  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028792           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~   30 (203)
                      .|+|.|.+||||||+.+.|..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            689999999999999999874

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=96.96  E-value=0.00038  Score=49.87  Aligned_cols=23  Identities=26%  Similarity=0.387  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      -..|+|+|++|||||||++.|.+
T Consensus         6 ~~~i~i~G~~GsGKSTl~~~l~~   28 (211)
T 3asz_A            6 PFVIGIAGGTASGKTTLAQALAR   28 (211)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHH
Confidence            35699999999999999999875

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=96.96  E-value=0.00043  Score=51.20  Aligned_cols=23  Identities=48%  Similarity=0.670  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~   32 (203)
                      .++++|+.|+|||||++.+.+-.
T Consensus        28 ~~~liG~NGsGKSTLlk~l~Gl~   50 (249)
T 2qi9_C           28 ILHLVGPNGAGKSTLLARMAGMT   50 (249)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47899999999999999998743

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=96.96  E-value=0.0005  Score=48.27  Aligned_cols=21  Identities=33%  Similarity=0.507  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028792           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~   30 (203)
                      .|+|.|++||||||+.+.|..
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999864

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=96.95  E-value=0.00045  Score=49.68  Aligned_cols=22  Identities=18%  Similarity=0.385  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      ++|+|+|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            1 MRIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999864

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=96.95  E-value=0.00046  Score=51.11  Aligned_cols=22  Identities=41%  Similarity=0.471  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~   31 (203)
                      .++++|+.|+|||||++.|.+-
T Consensus        31 ~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           31 VHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999984

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=96.94  E-value=0.00034  Score=50.31  Aligned_cols=22  Identities=27%  Similarity=0.389  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~   31 (203)
                      .++++|+.|+|||||++.+.+-
T Consensus        24 ~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           24 IVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             EEEEECCTTSSTTHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999864

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=96.94  E-value=0.00045  Score=49.17  Aligned_cols=22  Identities=32%  Similarity=0.418  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      ..|+|+|++||||||+.+.|..
T Consensus        19 ~~I~l~G~~GsGKSTla~~L~~   40 (202)
T 3t61_A           19 GSIVVMGVSGSGKSSVGEAIAE   40 (202)
T ss_dssp             SCEEEECSTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999999864

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=96.94  E-value=0.00051  Score=48.83  Aligned_cols=22  Identities=36%  Similarity=0.560  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      -.|+++|++||||||+.+.|..
T Consensus        26 ~~i~l~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           26 VRIFLTGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            3689999999999999999863

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=96.93  E-value=0.00046  Score=51.40  Aligned_cols=22  Identities=27%  Similarity=0.341  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~   31 (203)
                      .++|+|+.|+|||||++.|.+-
T Consensus        48 ~~~i~G~nGsGKSTLl~~l~Gl   69 (260)
T 2ghi_A           48 TCALVGHTGSGKSTIAKLLYRF   69 (260)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            4789999999999999999874

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=96.93  E-value=0.00051  Score=47.95  Aligned_cols=24  Identities=29%  Similarity=0.343  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcC
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~~   31 (203)
                      ..-++|+|++|+|||||+++|...
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHh
Confidence            346899999999999999999863

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=96.93  E-value=0.00056  Score=52.05  Aligned_cols=24  Identities=38%  Similarity=0.331  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDSY   33 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~~   33 (203)
                      .++++|++|+|||||+|.|.+...
T Consensus       171 iv~l~G~sG~GKSTll~~l~g~~~  194 (301)
T 1u0l_A          171 ISTMAGLSGVGKSSLLNAINPGLK  194 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTCC
T ss_pred             eEEEECCCCCcHHHHHHHhccccc
Confidence            478999999999999999987543

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=96.93  E-value=0.0005  Score=51.44  Aligned_cols=22  Identities=32%  Similarity=0.442  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~   31 (203)
                      .++|+|+.|+|||||++.+.+-
T Consensus        48 ~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           48 VHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999984

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=96.92  E-value=0.00052  Score=48.88  Aligned_cols=22  Identities=32%  Similarity=0.496  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      +.|+|+|++||||||+.+.|..
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            3799999999999999999876

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=96.92  E-value=0.00049  Score=51.82  Aligned_cols=23  Identities=35%  Similarity=0.450  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~   32 (203)
                      .++|+|+.|+|||||++.|.+-.
T Consensus        49 ~~~liG~NGsGKSTLlk~l~Gl~   71 (279)
T 2ihy_A           49 KWILYGLNGAGKTTLLNILNAYE   71 (279)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47899999999999999998744

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=96.92  E-value=0.00055  Score=48.01  Aligned_cols=22  Identities=23%  Similarity=0.234  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      ..|+|.|++||||||+.+.|..
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999999863

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=96.91  E-value=0.00048  Score=52.48  Aligned_cols=21  Identities=33%  Similarity=0.393  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028792           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~   30 (203)
                      .++|+|++|+|||||++.|.+
T Consensus       128 ~vaIvGpsGsGKSTLl~lL~g  148 (305)
T 2v9p_A          128 CLAFIGPPNTGKSMLCNSLIH  148 (305)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhh
Confidence            589999999999999999875

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=96.91  E-value=0.00061  Score=47.68  Aligned_cols=22  Identities=27%  Similarity=0.519  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      ..|+++|++||||||+.+.|..
T Consensus         5 ~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            5 QAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999863

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=96.91  E-value=0.00049  Score=51.56  Aligned_cols=23  Identities=26%  Similarity=0.322  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~   32 (203)
                      .++|+|+.|+|||||++.|.+-.
T Consensus        47 ~~~i~G~nGsGKSTLlk~l~Gl~   69 (271)
T 2ixe_A           47 VTALVGPNGSGKSTVAALLQNLY   69 (271)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998743

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=96.91  E-value=0.00061  Score=47.89  Aligned_cols=22  Identities=23%  Similarity=0.383  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      ..|+++|++||||||+.+.|..
T Consensus         6 ~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            6 ALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999864

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=96.90  E-value=0.00051  Score=50.96  Aligned_cols=23  Identities=35%  Similarity=0.443  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~   32 (203)
                      .++++|+.|+|||||++.+.+-.
T Consensus        33 ~~~l~G~nGsGKSTLl~~l~Gl~   55 (253)
T 2nq2_C           33 ILAVLGQNGCGKSTLLDLLLGIH   55 (253)
T ss_dssp             EEEEECCSSSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998754

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=96.90  E-value=0.0018  Score=43.49  Aligned_cols=23  Identities=17%  Similarity=0.293  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~   31 (203)
                      ..|++.|++|+|||++.+.+...
T Consensus        28 ~~vll~G~~GtGKt~lA~~i~~~   50 (143)
T 3co5_A           28 SPVFLTGEAGSPFETVARYFHKN   50 (143)
T ss_dssp             SCEEEEEETTCCHHHHHGGGCCT
T ss_pred             CcEEEECCCCccHHHHHHHHHHh
Confidence            46999999999999999988764

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=96.90  E-value=0.00066  Score=48.25  Aligned_cols=25  Identities=28%  Similarity=0.597  Sum_probs=21.7

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhc
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      ...+.|+|+|++||||||+.+.|..
T Consensus        18 ~~~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           18 GSHMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4457899999999999999999864

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=96.88  E-value=0.00059  Score=49.37  Aligned_cols=22  Identities=32%  Similarity=0.395  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      ..|+|+|++||||||+.+.|..
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~   27 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAE   27 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999864

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=96.88  E-value=0.00054  Score=51.19  Aligned_cols=23  Identities=43%  Similarity=0.499  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~   32 (203)
                      .++++|+.|+|||||++.+.+-.
T Consensus        35 ~~~liG~nGsGKSTLl~~i~Gl~   57 (266)
T 2yz2_A           35 CLLVAGNTGSGKSTLLQIVAGLI   57 (266)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47899999999999999998743

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=96.87  E-value=0.0007  Score=48.28  Aligned_cols=22  Identities=32%  Similarity=0.513  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      +.|+++|++||||||+.+.|..
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999999976

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=96.87  E-value=0.00057  Score=48.65  Aligned_cols=22  Identities=32%  Similarity=0.395  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      --|+|+|++|+||||+.+.|..
T Consensus        26 ~~i~l~G~sGsGKSTl~~~La~   47 (200)
T 3uie_A           26 CVIWVTGLSGSGKSTLACALNQ   47 (200)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999875

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.85  E-value=0.00069  Score=46.57  Aligned_cols=22  Identities=27%  Similarity=0.308  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      +.|+|.|.+||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            1 MRIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             CEEEEESCTTSCHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999999864

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=96.84  E-value=0.00036  Score=50.86  Aligned_cols=22  Identities=27%  Similarity=0.421  Sum_probs=14.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHh-cC
Q 028792           10 KLLLIGDSGVGKSCLLLRFA-DD   31 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~-~~   31 (203)
                      -++|+|++|||||||++.|. +.
T Consensus        29 ii~l~Gp~GsGKSTl~~~L~~~~   51 (231)
T 3lnc_A           29 ILVLSSPSGCGKTTVANKLLEKQ   51 (231)
T ss_dssp             EEEEECSCC----CHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            47899999999999999998 54

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=96.84  E-value=0.00068  Score=47.42  Aligned_cols=22  Identities=32%  Similarity=0.462  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      ..|+++|++||||||+.+.|..
T Consensus         6 ~~i~l~G~~GsGKst~a~~La~   27 (185)
T 3trf_A            6 TNIYLIGLMGAGKTSVGSQLAK   27 (185)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999999863

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.83  E-value=0.00091  Score=46.90  Aligned_cols=23  Identities=17%  Similarity=0.299  Sum_probs=20.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      ...|+|.|.+||||||+.+.|..
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999863

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=96.83  E-value=0.00056  Score=49.46  Aligned_cols=22  Identities=27%  Similarity=0.256  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~   31 (203)
                      -++|+|++|+|||||++.|.+.
T Consensus        27 ~~~l~G~nGsGKSTll~~l~g~   48 (231)
T 4a74_A           27 ITEVFGEFGSGKTQLAHTLAVM   48 (231)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999863

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=96.83  E-value=0.00082  Score=49.45  Aligned_cols=24  Identities=21%  Similarity=0.317  Sum_probs=21.3

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhc
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      ..+.|+|+|++||||||+.+.|..
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999999863

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=96.82  E-value=0.00058  Score=52.24  Aligned_cols=25  Identities=24%  Similarity=0.222  Sum_probs=21.7

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhc
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      ..-.-|+|+|++|||||||++.|.+
T Consensus        88 ~~g~ivgI~G~sGsGKSTL~~~L~g  112 (312)
T 3aez_A           88 PVPFIIGVAGSVAVGKSTTARVLQA  112 (312)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCchHHHHHHHHHh
Confidence            4456789999999999999999875

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=96.81  E-value=0.00074  Score=48.74  Aligned_cols=22  Identities=27%  Similarity=0.587  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      +.|+|+|++||||||+.+.|..
T Consensus         5 ~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            5 IRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            6799999999999999999864

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=96.81  E-value=0.00076  Score=50.30  Aligned_cols=23  Identities=30%  Similarity=0.550  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~   32 (203)
                      .++++|+.|+|||||++.+.+-.
T Consensus        32 ~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           32 KVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998754

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=96.80  E-value=0.00083  Score=47.91  Aligned_cols=22  Identities=27%  Similarity=0.303  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      ..|+|.|++||||||+.+.|..
T Consensus         5 ~~I~i~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A            5 VLIAFEGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Confidence            5799999999999999999964

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.80  E-value=0.00077  Score=48.89  Aligned_cols=22  Identities=27%  Similarity=0.430  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      +.|+|.|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            1 MNILIFGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999863

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=96.80  E-value=0.00098  Score=47.30  Aligned_cols=23  Identities=13%  Similarity=0.216  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~   31 (203)
                      ..|+|.|++||||||+.+.|...
T Consensus         5 ~~I~l~G~~GsGKsT~~~~L~~~   27 (204)
T 2v54_A            5 ALIVFEGLDKSGKTTQCMNIMES   27 (204)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHT
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHH
Confidence            57999999999999999999764

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=96.80  E-value=0.00088  Score=47.01  Aligned_cols=25  Identities=24%  Similarity=0.430  Sum_probs=21.4

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcC
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~~   31 (203)
                      ....|+++|++||||||+.+.|...
T Consensus         9 ~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            9 KGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHh
Confidence            3467999999999999999998754

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=96.79  E-value=0.00087  Score=47.11  Aligned_cols=23  Identities=22%  Similarity=0.495  Sum_probs=20.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      ...|+|.|.+||||||+.+.|..
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998863

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=96.78  E-value=0.0009  Score=50.56  Aligned_cols=24  Identities=29%  Similarity=0.336  Sum_probs=21.0

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhc
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      ...-|+++|++||||||+.+.|..
T Consensus        32 ~~~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           32 SPTAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            446799999999999999999964

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=96.77  E-value=0.00071  Score=46.98  Aligned_cols=21  Identities=38%  Similarity=0.542  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028792           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~   30 (203)
                      .|+|+|++||||||+.+.|..
T Consensus         6 ~i~i~G~~GsGKsTla~~La~   26 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAK   26 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            699999999999999999864

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=96.76  E-value=0.00053  Score=46.56  Aligned_cols=22  Identities=32%  Similarity=0.554  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~   31 (203)
                      .++++|++|+|||+|++.+.+.
T Consensus        38 ~~~l~G~~G~GKTtL~~~i~~~   59 (149)
T 2kjq_A           38 FIYVWGEEGAGKSHLLQAWVAQ   59 (149)
T ss_dssp             EEEEESSSTTTTCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999863

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=96.75  E-value=0.0004  Score=48.37  Aligned_cols=21  Identities=33%  Similarity=0.553  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028792           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~   30 (203)
                      .++|+|++|+|||||++.|.+
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~   24 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMP   24 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999986

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=96.75  E-value=0.00072  Score=50.74  Aligned_cols=21  Identities=38%  Similarity=0.623  Sum_probs=19.5

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 028792           11 LLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        11 i~i~G~~~~GKSsli~~l~~~   31 (203)
                      ++++|++|+|||||++.+.+.
T Consensus        47 vlL~Gp~GtGKTtLakala~~   67 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANE   67 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            899999999999999999863

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.75  E-value=0.00084  Score=48.71  Aligned_cols=21  Identities=24%  Similarity=0.580  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 028792            9 FKLLLIGDSGVGKSCLLLRFA   29 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~   29 (203)
                      ..|+|+|++||||||+.+.|.
T Consensus         8 ~~I~l~G~~GsGKsT~a~~La   28 (227)
T 1zd8_A            8 LRAVIMGAPGSGKGTVSSRIT   28 (227)
T ss_dssp             CEEEEEECTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            679999999999999999986

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.74  E-value=0.0022  Score=45.69  Aligned_cols=21  Identities=33%  Similarity=0.593  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028792           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~   30 (203)
                      .+++.|++|+|||+|++.+..
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~   60 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALAR   60 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            389999999999999999875

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=96.74  E-value=0.0006  Score=52.01  Aligned_cols=22  Identities=41%  Similarity=0.510  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~   31 (203)
                      .++|+|++|+|||||++.|.+-
T Consensus        82 ~vaivG~sGsGKSTLl~ll~gl  103 (306)
T 3nh6_A           82 TLALVGPSGAGKSTILRLLFRF  103 (306)
T ss_dssp             EEEEESSSCHHHHHHHHHHTTS
T ss_pred             EEEEECCCCchHHHHHHHHHcC
Confidence            5789999999999999998763

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=96.73  E-value=0.00073  Score=52.66  Aligned_cols=21  Identities=38%  Similarity=0.563  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028792           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~   30 (203)
                      .++|+|++|||||||++.+.+
T Consensus       125 ~i~I~GptGSGKTTlL~~l~g  145 (356)
T 3jvv_A          125 LVLVTGPTGSGKSTTLAAMLD  145 (356)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            689999999999999999875

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=96.73  E-value=0.00071  Score=52.88  Aligned_cols=24  Identities=25%  Similarity=0.373  Sum_probs=21.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcC
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~~   31 (203)
                      .-+++|+|++|+|||||++.|.+-
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl  193 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAV  193 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHH
Confidence            357899999999999999999864

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=96.72  E-value=0.00081  Score=50.91  Aligned_cols=23  Identities=30%  Similarity=0.559  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~   32 (203)
                      .++++|+.|+|||||++.|.+-.
T Consensus        66 ~~~i~G~NGsGKSTLlk~l~Gl~   88 (290)
T 2bbs_A           66 LLAVAGSTGAGKTSLLMMIMGEL   88 (290)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            47899999999999999998743

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.71  E-value=0.00078  Score=48.71  Aligned_cols=23  Identities=17%  Similarity=0.247  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      ...|+|+|++||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKsT~~~~La~   27 (222)
T 1zak_A            5 PLKVMISGAPASGKGTQCELIKT   27 (222)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999863

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=96.69  E-value=0.00094  Score=46.55  Aligned_cols=22  Identities=41%  Similarity=0.573  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      ..|+++|++||||||+.+.|..
T Consensus        12 ~~i~i~G~~GsGKst~~~~l~~   33 (180)
T 3iij_A           12 PNILLTGTPGVGKTTLGKELAS   33 (180)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEeCCCCCHHHHHHHHHH
Confidence            4689999999999999999873

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.68  E-value=0.001  Score=48.02  Aligned_cols=23  Identities=30%  Similarity=0.398  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      -+.|+|+|.+||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKsT~a~~La~   27 (217)
T 3be4_A            5 KHNLILIGAPGSGKGTQCEFIKK   27 (217)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            36799999999999999999853

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=96.68  E-value=0.0016  Score=46.40  Aligned_cols=25  Identities=20%  Similarity=0.268  Sum_probs=21.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcC
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~~   31 (203)
                      ....|+|+|++||||||+.+.|...
T Consensus        20 ~~~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           20 KTFIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHh
Confidence            3467999999999999999999764

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.68  E-value=0.0011  Score=46.03  Aligned_cols=22  Identities=18%  Similarity=0.308  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      ..+.|+|++|||||||+.+|..
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~   26 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVA   26 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4688999999999999999985

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.68  E-value=0.00094  Score=49.46  Aligned_cols=20  Identities=25%  Similarity=0.400  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 028792           10 KLLLIGDSGVGKSCLLLRFA   29 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~   29 (203)
                      -|+|+|++|||||||.+.|.
T Consensus         3 li~I~G~~GSGKSTla~~La   22 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIA   22 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHH
Confidence            47899999999999999986

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=96.67  E-value=0.00089  Score=49.24  Aligned_cols=22  Identities=23%  Similarity=0.391  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      .-|+|+|+.|||||||++.|.+
T Consensus        26 ~iigI~G~~GsGKSTl~k~L~~   47 (245)
T 2jeo_A           26 FLIGVSGGTASGKSTVCEKIME   47 (245)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            5699999999999999999865

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.66  E-value=0.0011  Score=46.58  Aligned_cols=21  Identities=19%  Similarity=0.300  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028792           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~   30 (203)
                      .|++.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999865

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=96.66  E-value=0.00093  Score=49.32  Aligned_cols=21  Identities=43%  Similarity=0.707  Sum_probs=19.5

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 028792           11 LLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        11 i~i~G~~~~GKSsli~~l~~~   31 (203)
                      ++++|++|+|||||++.+.+.
T Consensus        52 ~ll~G~~G~GKTtl~~~i~~~   72 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLARAVAGE   72 (254)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            899999999999999999863

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=96.65  E-value=0.005  Score=49.31  Aligned_cols=25  Identities=20%  Similarity=0.125  Sum_probs=20.9

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHh
Q 028792            5 YDYLFKLLLIGDSGVGKSCLLLRFA   29 (203)
Q Consensus         5 ~~~~~~i~i~G~~~~GKSsli~~l~   29 (203)
                      ...+.-|.|+|+.++|||+|+|.|+
T Consensus        64 ~~~v~vvsv~G~~~~gks~l~N~ll   88 (457)
T 4ido_A           64 DKEVVAVSVAGAFRKGKSFLMDFML   88 (457)
T ss_dssp             TSBEEEEEEEEBTTSSHHHHHHHHH
T ss_pred             CCceEEEEEECCCCCchhHHHHHHH
Confidence            3456778899999999999999664

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=96.65  E-value=0.0011  Score=46.62  Aligned_cols=22  Identities=18%  Similarity=0.391  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      ..|+|+|++||||||+.+.|..
T Consensus        10 ~~I~l~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A           10 NIIFVVGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999863

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.64  E-value=0.0012  Score=45.87  Aligned_cols=22  Identities=36%  Similarity=0.649  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      -.+++.|++|+|||+|++.+..
T Consensus        44 ~~~ll~G~~G~GKT~l~~~~~~   65 (195)
T 1jbk_A           44 NNPVLIGEPGVGKTAIVEGLAQ   65 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHH
Confidence            4589999999999999999875

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.64  E-value=0.0015  Score=47.01  Aligned_cols=22  Identities=41%  Similarity=0.608  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      +.|+|.|.+||||||+.+.|..
T Consensus         5 ~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            5 YIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            6799999999999999999864

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=96.64  E-value=0.001  Score=51.33  Aligned_cols=23  Identities=17%  Similarity=0.406  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~   32 (203)
                      .++|+|++|||||||++.|.+--
T Consensus       173 ~v~i~G~~GsGKTTll~~l~g~~  195 (330)
T 2pt7_A          173 NVIVCGGTGSGKTTYIKSIMEFI  195 (330)
T ss_dssp             CEEEEESTTSCHHHHHHHGGGGS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999998743

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=96.63  E-value=0.0011  Score=51.76  Aligned_cols=22  Identities=36%  Similarity=0.342  Sum_probs=19.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCC
Q 028792           11 LLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        11 i~i~G~~~~GKSsli~~l~~~~   32 (203)
                      ++|+|++|||||||++.+.+-.
T Consensus        57 ~~IiGpnGaGKSTLlr~i~GL~   78 (366)
T 3tui_C           57 YGVIGASGAGKSTLIRCVNLLE   78 (366)
T ss_dssp             EEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEcCCCchHHHHHHHHhcCC
Confidence            6899999999999999998744

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=96.63  E-value=0.001  Score=51.78  Aligned_cols=22  Identities=45%  Similarity=0.644  Sum_probs=19.8

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCC
Q 028792           11 LLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        11 i~i~G~~~~GKSsli~~l~~~~   32 (203)
                      ++++|++|+|||||++.+.+-.
T Consensus        33 ~~llGpsGsGKSTLLr~iaGl~   54 (359)
T 3fvq_A           33 LFIIGASGCGKTTLLRCLAGFE   54 (359)
T ss_dssp             EEEEESTTSSHHHHHHHHHTSS
T ss_pred             EEEECCCCchHHHHHHHHhcCC
Confidence            6899999999999999998754

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=96.62  E-value=0.0015  Score=46.45  Aligned_cols=23  Identities=17%  Similarity=0.430  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      ...|+|.|++||||||+.+.|..
T Consensus        15 ~~~I~l~G~~GsGKsT~~~~L~~   37 (203)
T 1ukz_A           15 VSVIFVLGGPGAGKGTQCEKLVK   37 (203)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999863

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.62  E-value=0.0012  Score=47.84  Aligned_cols=20  Identities=20%  Similarity=0.527  Sum_probs=17.4

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q 028792           11 LLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        11 i~i~G~~~~GKSsli~~l~~   30 (203)
                      |+|+|+|||||+|....|..
T Consensus        32 I~llGpPGsGKgTqa~~L~~   51 (217)
T 3umf_A           32 IFVLGGPGSGKGTQCEKLVQ   51 (217)
T ss_dssp             EEEECCTTCCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            56789999999999998864

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.61  E-value=0.0013  Score=47.94  Aligned_cols=23  Identities=26%  Similarity=0.450  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      -..|+|+|.+||||||+.+.|..
T Consensus        16 ~~~I~l~G~~GsGKsT~a~~La~   38 (233)
T 1ak2_A           16 GVRAVLLGPPGAGKGTQAPKLAK   38 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999999863

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.60  E-value=0.001  Score=46.53  Aligned_cols=22  Identities=41%  Similarity=0.501  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      ..|+|+|.+||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3599999999999999998864

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=96.60  E-value=0.0011  Score=51.86  Aligned_cols=22  Identities=23%  Similarity=0.608  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~   31 (203)
                      .++|+|++|+|||||++.|.+-
T Consensus       177 ~i~ivG~sGsGKSTll~~l~~~  198 (361)
T 2gza_A          177 VIVVAGETGSGKTTLMKALMQE  198 (361)
T ss_dssp             CEEEEESSSSCHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            6899999999999999999874

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.60  E-value=0.0013  Score=46.48  Aligned_cols=22  Identities=23%  Similarity=0.459  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      ..|+|+|++||||||+.+.|..
T Consensus        13 ~~I~l~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A           13 KIIFIIGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999864

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=96.60  E-value=0.0012  Score=51.44  Aligned_cols=22  Identities=36%  Similarity=0.468  Sum_probs=19.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCC
Q 028792           11 LLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        11 i~i~G~~~~GKSsli~~l~~~~   32 (203)
                      ++++|++|+|||||++.+.+-.
T Consensus        44 ~~llGpnGsGKSTLLr~iaGl~   65 (355)
T 1z47_A           44 VGLLGPSGSGKTTILRLIAGLE   65 (355)
T ss_dssp             EEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEECCCCCcHHHHHHHHhCCC
Confidence            6899999999999999998744

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=96.60  E-value=0.0011  Score=51.99  Aligned_cols=21  Identities=33%  Similarity=0.572  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028792           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~   30 (203)
                      .++|+|++|||||||++.|.+
T Consensus       138 ~i~ivG~~GsGKTTll~~l~~  158 (372)
T 2ewv_A          138 LILVTGPTGSGKSTTIASMID  158 (372)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            589999999999999999975

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.59  E-value=0.00048  Score=49.31  Aligned_cols=21  Identities=24%  Similarity=0.453  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028792           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~   30 (203)
                      -|+|.|++||||||+++.|..
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~   22 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSG   22 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            489999999999999999864

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=96.59  E-value=0.0011  Score=50.59  Aligned_cols=84  Identities=15%  Similarity=0.105  Sum_probs=45.3

Q ss_pred             EEEEEeCCChhhhch------------hhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 028792           58 KLQIWDTAGQERFRT------------ITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL  125 (203)
Q Consensus        58 ~~~i~D~~g~~~~~~------------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~  125 (203)
                      .+.++|++|......            ..+.+....+.+++++|+......   ...+..+....  + ..++++||.|.
T Consensus       186 d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~~---~~~~~~~~~~~--~-~t~iivTh~d~  259 (304)
T 1rj9_A          186 DLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNG---LEQAKKFHEAV--G-LTGVIVTKLDG  259 (304)
T ss_dssp             SEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHH---HHHHHHHHHHH--C-CSEEEEECTTS
T ss_pred             CEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHHH---HHHHHHHHHHc--C-CcEEEEECCcc
Confidence            356889998432111            112234567788889998754432   22222222221  2 34778999985


Q ss_pred             CCCcccCHHHHHHHHHHcCCCEEEEe
Q 028792          126 TANKVVSYETAKAFADEIGIPFMETS  151 (203)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~S  151 (203)
                      ...    .-.+.......+.|+..+.
T Consensus       260 ~a~----gg~~l~i~~~~~~pi~~ig  281 (304)
T 1rj9_A          260 TAK----GGVLIPIVRTLKVPIKFVG  281 (304)
T ss_dssp             SCC----CTTHHHHHHHHCCCEEEEE
T ss_pred             ccc----ccHHHHHHHHHCCCeEEEe
Confidence            422    1123455566777877665

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=96.59  E-value=0.0011  Score=50.46  Aligned_cols=22  Identities=27%  Similarity=0.474  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      --++++|++||||||+++.|.+
T Consensus       101 ~vi~lvG~nGsGKTTll~~Lag  122 (302)
T 3b9q_A          101 AVIMIVGVNGGGKTTSLGKLAH  122 (302)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHH
Confidence            3688999999999999999864

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.58  E-value=0.0012  Score=49.04  Aligned_cols=22  Identities=36%  Similarity=0.546  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      ..|+++|.+||||||+.+.|..
T Consensus         5 ~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            5 MLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHH
Confidence            4699999999999999999874

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.57  E-value=0.0013  Score=45.35  Aligned_cols=21  Identities=19%  Similarity=0.456  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028792           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~   30 (203)
                      .|+|.|.+||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999864

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.57  E-value=0.0052  Score=47.46  Aligned_cols=21  Identities=33%  Similarity=0.583  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028792           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~   30 (203)
                      .+++.|++|+||||+++.+.+
T Consensus        38 ~~ll~Gp~G~GKTtl~~~la~   58 (354)
T 1sxj_E           38 HLLLYGPNGTGKKTRCMALLE   58 (354)
T ss_dssp             CEEEECSTTSSHHHHHHTHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            389999999999999998876

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=96.57  E-value=0.0016  Score=50.01  Aligned_cols=25  Identities=20%  Similarity=0.211  Sum_probs=21.5

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhc
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      ...+-|+|+|++|||||||++.|..
T Consensus        90 ~~p~iigI~GpsGSGKSTl~~~L~~  114 (321)
T 3tqc_A           90 KVPYIIGIAGSVAVGKSTTSRVLKA  114 (321)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4557799999999999999998853

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=96.56  E-value=0.0013  Score=51.36  Aligned_cols=22  Identities=41%  Similarity=0.557  Sum_probs=19.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCC
Q 028792           11 LLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        11 i~i~G~~~~GKSsli~~l~~~~   32 (203)
                      ++++|++|+|||||++.+.+-.
T Consensus        32 ~~llGpnGsGKSTLLr~iaGl~   53 (359)
T 2yyz_A           32 VALLGPSGCGKTTTLLMLAGIY   53 (359)
T ss_dssp             EEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEcCCCchHHHHHHHHHCCC
Confidence            6899999999999999998743

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.56  E-value=0.0011  Score=49.04  Aligned_cols=25  Identities=28%  Similarity=0.320  Sum_probs=21.4

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhc
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      .....|+++|++||||||+.+.|..
T Consensus        30 ~~~~~i~l~G~~GsGKSTla~~L~~   54 (253)
T 2p5t_B           30 KQPIAILLGGQSGAGKTTIHRIKQK   54 (253)
T ss_dssp             SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3446899999999999999999864

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=96.55  E-value=0.0019  Score=45.23  Aligned_cols=23  Identities=35%  Similarity=0.478  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      -..|+++|.+||||||+.+.|..
T Consensus        13 ~~~i~l~G~~GsGKsT~~~~L~~   35 (186)
T 2yvu_A           13 GIVVWLTGLPGSGKTTIATRLAD   35 (186)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHH
Confidence            46789999999999999999864

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=96.55  E-value=0.0013  Score=51.28  Aligned_cols=22  Identities=45%  Similarity=0.594  Sum_probs=19.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCC
Q 028792           11 LLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        11 i~i~G~~~~GKSsli~~l~~~~   32 (203)
                      ++++|++|+|||||++.+.+-.
T Consensus        32 ~~llGpnGsGKSTLLr~iaGl~   53 (362)
T 2it1_A           32 MALLGPSGSGKSTLLYTIAGIY   53 (362)
T ss_dssp             EEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEECCCCchHHHHHHHHhcCC
Confidence            6899999999999999998743

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=96.55  E-value=0.0011  Score=52.69  Aligned_cols=22  Identities=32%  Similarity=0.451  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~   31 (203)
                      -++|+|++|||||||++.+++.
T Consensus       169 ii~I~GpnGSGKTTlL~allg~  190 (418)
T 1p9r_A          169 IILVTGPTGSGKSTTLYAGLQE  190 (418)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHhh
Confidence            4899999999999999999863

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=96.55  E-value=0.0014  Score=46.88  Aligned_cols=23  Identities=22%  Similarity=0.198  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      ...|+|.|.+||||||+.+.|..
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A            9 GALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999874

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=96.54  E-value=0.0013  Score=51.54  Aligned_cols=22  Identities=41%  Similarity=0.587  Sum_probs=19.8

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCC
Q 028792           11 LLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        11 i~i~G~~~~GKSsli~~l~~~~   32 (203)
                      ++++|++|+|||||++.+.+-.
T Consensus        32 ~~llGpsGsGKSTLLr~iaGl~   53 (381)
T 3rlf_A           32 VVFVGPSGCGKSTLLRMIAGLE   53 (381)
T ss_dssp             EEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEcCCCchHHHHHHHHHcCC
Confidence            6899999999999999998744

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=96.52  E-value=0.0012  Score=50.86  Aligned_cols=21  Identities=38%  Similarity=0.596  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028792           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~   30 (203)
                      .++++|++|+|||||++.+.+
T Consensus        53 ~~ll~Gp~G~GKTTLa~~ia~   73 (334)
T 1in4_A           53 HVLLAGPPGLGKTTLAHIIAS   73 (334)
T ss_dssp             CEEEESSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            489999999999999999976

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=96.52  E-value=0.0012  Score=50.29  Aligned_cols=23  Identities=22%  Similarity=0.287  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      -.-|+|+|++|||||||++.|.+
T Consensus        80 g~iigI~G~~GsGKSTl~~~L~~  102 (308)
T 1sq5_A           80 PYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999876

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=96.52  E-value=0.0013  Score=46.79  Aligned_cols=24  Identities=25%  Similarity=0.163  Sum_probs=20.6

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhc
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      ...-|+|+|++|||||||++.|..
T Consensus        21 ~~~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A           21 GRLVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999998864

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=96.51  E-value=0.0019  Score=48.81  Aligned_cols=24  Identities=21%  Similarity=0.335  Sum_probs=21.0

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHh
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFA   29 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~   29 (203)
                      .....|+|+|++|||||||++.|.
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~   52 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIY   52 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHH
Confidence            456789999999999999999875

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=96.50  E-value=0.0016  Score=48.18  Aligned_cols=21  Identities=33%  Similarity=0.362  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 028792            9 FKLLLIGDSGVGKSCLLLRFA   29 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~   29 (203)
                      ..|+|+|++||||||+.+.|.
T Consensus        28 ~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           28 PVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            479999999999999999997

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=96.50  E-value=0.0014  Score=51.30  Aligned_cols=22  Identities=36%  Similarity=0.552  Sum_probs=19.8

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCC
Q 028792           11 LLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        11 i~i~G~~~~GKSsli~~l~~~~   32 (203)
                      ++++|++|+|||||++.+.+-.
T Consensus        32 ~~llGpnGsGKSTLLr~iaGl~   53 (372)
T 1g29_1           32 MILLGPSGCGKTTTLRMIAGLE   53 (372)
T ss_dssp             EEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEECCCCcHHHHHHHHHHcCC
Confidence            6899999999999999998754

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=96.50  E-value=0.0013  Score=49.19  Aligned_cols=22  Identities=41%  Similarity=0.658  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~   31 (203)
                      .++++|++|+|||||++.+.+.
T Consensus        75 gvll~Gp~GtGKTtl~~~i~~~   96 (278)
T 1iy2_A           75 GVLLVGPPGVGKTHLARAVAGE   96 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCcChHHHHHHHHHHH
Confidence            3899999999999999999863

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=96.50  E-value=0.0015  Score=45.51  Aligned_cols=21  Identities=24%  Similarity=0.195  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028792           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~   30 (203)
                      -.+|+|+.|+|||||+++|..
T Consensus        28 ~~~i~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILF   48 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            368999999999999999863

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=96.50  E-value=0.0015  Score=51.20  Aligned_cols=23  Identities=39%  Similarity=0.484  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~   32 (203)
                      -++++|++|+|||||++.+.+-.
T Consensus        39 ~~~llGpnGsGKSTLLr~iaGl~   61 (372)
T 1v43_A           39 FLVLLGPSGCGKTTTLRMIAGLE   61 (372)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            36899999999999999998643

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=96.50  E-value=0.0014  Score=53.63  Aligned_cols=23  Identities=17%  Similarity=0.260  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~   32 (203)
                      .++|+|++|||||||++.|.+--
T Consensus       262 ~i~I~GptGSGKTTlL~aL~~~i  284 (511)
T 2oap_1          262 SAIVVGETASGKTTTLNAIMMFI  284 (511)
T ss_dssp             CEEEEESTTSSHHHHHHHHGGGS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            48999999999999999998643

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.50  E-value=0.00099  Score=46.41  Aligned_cols=22  Identities=23%  Similarity=0.283  Sum_probs=15.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      ..|+|.|.+||||||+.+.|..
T Consensus         6 ~~I~l~G~~GsGKST~a~~La~   27 (183)
T 2vli_A            6 PIIWINGPFGVGKTHTAHTLHE   27 (183)
T ss_dssp             CEEEEECCC----CHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5699999999999999999863

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=96.45  E-value=0.0017  Score=46.95  Aligned_cols=21  Identities=33%  Similarity=0.613  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028792           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~   30 (203)
                      -++++|++|+|||||++.+..
T Consensus        25 ~~~i~G~~GsGKTtl~~~l~~   45 (235)
T 2w0m_A           25 FIALTGEPGTGKTIFSLHFIA   45 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            478899999999999999874

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.44  E-value=0.002  Score=44.31  Aligned_cols=22  Identities=41%  Similarity=0.460  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      -.|+|.|.+||||||+.+.|..
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999853

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=96.44  E-value=0.0018  Score=45.09  Aligned_cols=22  Identities=27%  Similarity=0.496  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      ..|+++|.+||||||+.+.|..
T Consensus         6 ~~i~l~G~~GsGKST~~~~L~~   27 (179)
T 2pez_A            6 CTVWLTGLSGAGKTTVSMALEE   27 (179)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4688999999999999999875

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=96.44  E-value=0.0012  Score=51.28  Aligned_cols=23  Identities=26%  Similarity=0.450  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~   32 (203)
                      -++++|++|+|||||++.+.+-.
T Consensus        28 ~~~llGpnGsGKSTLLr~iaGl~   50 (348)
T 3d31_A           28 YFVILGPTGAGKTLFLELIAGFH   50 (348)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCccHHHHHHHHHcCC
Confidence            36899999999999999998743

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=96.42  E-value=0.0019  Score=50.40  Aligned_cols=23  Identities=39%  Similarity=0.612  Sum_probs=20.9

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHH
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRF   28 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l   28 (203)
                      .+..||+++|.+|||||||++++
T Consensus        31 ~~~~killlG~~~SGKST~~kq~   53 (362)
T 1zcb_A           31 ARLVKILLLGAGESGKSTFLKQM   53 (362)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHH
T ss_pred             cCccEEEEECCCCCcHHHHHHHH
Confidence            45799999999999999999886

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.42  E-value=0.002  Score=47.13  Aligned_cols=23  Identities=26%  Similarity=0.336  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      .+.|+|.|++|+||||+.+.|..
T Consensus         9 ~~~i~i~G~~GsGKsTla~~la~   31 (233)
T 3r20_A            9 SLVVAVDGPAGTGKSSVSRGLAR   31 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999999863

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=96.41  E-value=0.0014  Score=47.74  Aligned_cols=24  Identities=33%  Similarity=0.562  Sum_probs=21.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcC
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~~   31 (203)
                      -.-|+|.|+.|||||||++.|.+.
T Consensus        20 g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           20 PFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhc
Confidence            357899999999999999998764

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.41  E-value=0.0021  Score=47.46  Aligned_cols=24  Identities=21%  Similarity=0.306  Sum_probs=21.1

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhc
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      ..+.|+|.|++||||||+.+.|..
T Consensus        21 ~~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           21 EPFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999998864

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.39  E-value=0.0016  Score=45.22  Aligned_cols=22  Identities=36%  Similarity=0.605  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      -.++|.|++|+|||+|++.+..
T Consensus        44 ~~vll~G~~G~GKT~la~~~~~   65 (187)
T 2p65_A           44 NNPILLGDPGVGKTAIVEGLAI   65 (187)
T ss_dssp             CEEEEESCGGGCHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHH
Confidence            4679999999999999998864

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=96.39  E-value=0.0013  Score=50.35  Aligned_cols=23  Identities=35%  Similarity=0.446  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~   31 (203)
                      --++|+|+.|||||||++.|.+.
T Consensus         5 ~v~~i~G~~GaGKTTll~~l~~~   27 (318)
T 1nij_A            5 AVTLLTGFLGAGKTTLLRHILNE   27 (318)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHS
T ss_pred             cEEEEEecCCCCHHHHHHHHHhh
Confidence            45789999999999999999964

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.39  E-value=0.0018  Score=47.88  Aligned_cols=22  Identities=32%  Similarity=0.510  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      -.+++.|++|+|||+|++.+.+
T Consensus        46 ~~vll~G~~GtGKT~la~~la~   67 (257)
T 1lv7_A           46 KGVLMVGPPGTGKTLLAKAIAG   67 (257)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHH
Confidence            3589999999999999999975

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=96.35  E-value=0.0018  Score=50.44  Aligned_cols=22  Identities=27%  Similarity=0.474  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      --++++|++||||||+++.|.+
T Consensus       158 ~vi~lvG~nGsGKTTll~~Lag  179 (359)
T 2og2_A          158 AVIMIVGVNGGGKTTSLGKLAH  179 (359)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEEcCCCChHHHHHHHHHh
Confidence            3688999999999999999864

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.34  E-value=0.0023  Score=46.35  Aligned_cols=23  Identities=17%  Similarity=0.267  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      .-.++|.|++|+|||+|++.+..
T Consensus        52 ~~~~ll~G~~G~GKT~la~~l~~   74 (242)
T 3bos_A           52 VQAIYLWGPVKSGRTHLIHAACA   74 (242)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            35689999999999999999875

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=96.34  E-value=0.0024  Score=43.31  Aligned_cols=19  Identities=47%  Similarity=0.651  Sum_probs=17.3

Q ss_pred             EEEEcCCCCcHHHHHHHHh
Q 028792           11 LLLIGDSGVGKSCLLLRFA   29 (203)
Q Consensus        11 i~i~G~~~~GKSsli~~l~   29 (203)
                      .+|+|+.|+||||++.++.
T Consensus        26 ~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           26 NLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            4789999999999999975

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=96.33  E-value=0.002  Score=50.80  Aligned_cols=22  Identities=41%  Similarity=0.585  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~   31 (203)
                      -++++|++|+|||||++.+.+-
T Consensus        49 ~~~llGpsGsGKSTLLr~iaGl   70 (390)
T 3gd7_A           49 RVGLLGRTGSGKSTLLSAFLRL   70 (390)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCChHHHHHHHHhCC
Confidence            4789999999999999999863

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.32  E-value=0.0023  Score=45.36  Aligned_cols=22  Identities=45%  Similarity=0.581  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      -.+++.|++|+|||+|++.+..
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~   76 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIAN   76 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999875

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=96.31  E-value=0.0025  Score=48.19  Aligned_cols=22  Identities=36%  Similarity=0.413  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      ..|+++|++||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999875

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.31  E-value=0.0022  Score=45.96  Aligned_cols=22  Identities=32%  Similarity=0.468  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      .-|+++|.+|+||||+.+.|..
T Consensus        26 ~~i~~~G~~GsGKsT~~~~l~~   47 (211)
T 1m7g_A           26 LTIWLTGLSASGKSTLAVELEH   47 (211)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999864

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.30  E-value=0.002  Score=48.73  Aligned_cols=22  Identities=27%  Similarity=0.415  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~   31 (203)
                      -++|+|++|+|||||++.+.+.
T Consensus        37 ~~~i~G~~G~GKTTl~~~ia~~   58 (296)
T 1cr0_A           37 VIMVTSGSGMGKSTFVRQQALQ   58 (296)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            4789999999999999998753

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=96.30  E-value=0.0012  Score=51.45  Aligned_cols=23  Identities=26%  Similarity=0.460  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~   32 (203)
                      -++++|++|+|||||++.+.+-.
T Consensus        33 ~~~llGpnGsGKSTLLr~iaGl~   55 (353)
T 1oxx_K           33 RFGILGPSGAGKTTFMRIIAGLD   55 (353)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            36899999999999999998754

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.27  E-value=0.0034  Score=47.17  Aligned_cols=23  Identities=43%  Similarity=0.499  Sum_probs=20.8

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHh
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFA   29 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~   29 (203)
                      ..+.|+|.|.+||||||+.+.|.
T Consensus        74 ~~~iI~I~G~~GSGKSTva~~La   96 (281)
T 2f6r_A           74 GLYVLGLTGISGSGKSSVAQRLK   96 (281)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH
Confidence            45789999999999999999986

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=96.27  E-value=0.0021  Score=52.05  Aligned_cols=22  Identities=36%  Similarity=0.717  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      --++|+|++|||||||++.|.+
T Consensus       294 eVI~LVGpNGSGKTTLl~~LAg  315 (503)
T 2yhs_A          294 FVILMVGVNGVGKTTTIGKLAR  315 (503)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCcccHHHHHHHHHH
Confidence            3588999999999999999864

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=96.26  E-value=0.0029  Score=46.11  Aligned_cols=26  Identities=23%  Similarity=0.378  Sum_probs=20.3

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhc
Q 028792            5 YDYLFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         5 ~~~~~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      ....+++.|+|+|||||||+...|..
T Consensus         5 ~~~~~~~~~~G~pGsGKsT~a~~L~~   30 (230)
T 3gmt_A            5 HHHHMRLILLGAPGAGKGTQANFIKE   30 (230)
T ss_dssp             ----CEEEEECCTTSCHHHHHHHHHH
T ss_pred             cccccceeeECCCCCCHHHHHHHHHH
Confidence            44568999999999999999998853

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=96.25  E-value=0.0017  Score=46.38  Aligned_cols=21  Identities=29%  Similarity=0.471  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028792           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~   30 (203)
                      .+++.|+||+|||+++.+|..
T Consensus        60 ~ili~GPPGtGKTt~a~ala~   80 (212)
T 1tue_A           60 CLVFCGPANTGKSYFGMSFIH   80 (212)
T ss_dssp             EEEEESCGGGCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999888865

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=96.24  E-value=0.0026  Score=46.33  Aligned_cols=23  Identities=17%  Similarity=0.232  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      -.-|+|.|++||||||+++.|..
T Consensus        26 g~~i~i~G~~GsGKsT~~~~l~~   48 (229)
T 4eaq_A           26 SAFITFEGPEGSGKTTVINEVYH   48 (229)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Confidence            35689999999999999999875

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=96.24  E-value=0.0026  Score=45.57  Aligned_cols=21  Identities=24%  Similarity=0.208  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028792           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~   30 (203)
                      -++++|++|+|||||+..+..
T Consensus        22 ~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           22 LTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999987

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.23  E-value=0.0027  Score=46.25  Aligned_cols=22  Identities=18%  Similarity=0.194  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~   31 (203)
                      -++|+|++|+|||||+..+...
T Consensus        26 ~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           26 ITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            4789999999999999999863

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=96.22  E-value=0.0023  Score=47.27  Aligned_cols=22  Identities=27%  Similarity=0.335  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      -.|+++|++|+||||+.+.|..
T Consensus        49 ~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           49 RSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999999864

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=96.22  E-value=0.0022  Score=51.72  Aligned_cols=22  Identities=23%  Similarity=0.474  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~   31 (203)
                      .++|+|+.|||||||++.|.+-
T Consensus       140 ~v~IvGpnGsGKSTLlr~L~Gl  161 (460)
T 2npi_A          140 RVVIVGGSQTGKTSLSRTLCSY  161 (460)
T ss_dssp             CEEEEESTTSSHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhCc
Confidence            5899999999999999998753

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.20  E-value=0.0029  Score=42.47  Aligned_cols=23  Identities=17%  Similarity=0.200  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~   31 (203)
                      ..|++.|++|+|||++.+.+...
T Consensus        25 ~~vll~G~~GtGKt~lA~~i~~~   47 (145)
T 3n70_A           25 IAVWLYGAPGTGRMTGARYLHQF   47 (145)
T ss_dssp             SCEEEESSTTSSHHHHHHHHHHS
T ss_pred             CCEEEECCCCCCHHHHHHHHHHh
Confidence            46899999999999999998754

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=96.19  E-value=0.0027  Score=49.28  Aligned_cols=23  Identities=35%  Similarity=0.523  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~   32 (203)
                      +++++|++|+|||||++.+.+..
T Consensus        73 ~~gIiG~nGaGKTTLl~~I~g~~   95 (347)
T 2obl_A           73 RIGIFAGSGVGKSTLLGMICNGA   95 (347)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68999999999999999998754

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=96.12  E-value=0.0028  Score=49.73  Aligned_cols=22  Identities=23%  Similarity=0.250  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      -.++++|++|+|||||++.|.+
T Consensus       170 ~~i~l~G~~GsGKSTl~~~l~~  191 (377)
T 1svm_A          170 RYWLFKGPIDSGKTTLAAALLE  191 (377)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            3689999999999999999985

>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}

Probab=96.11  E-value=0.0086  Score=43.42  Aligned_cols=24  Identities=17%  Similarity=-0.024  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCC
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~   32 (203)
                      +-|++.|+++.|||+|+++|++..
T Consensus        30 ilvl~~~~~~~~~~~~~~~lf~~~   53 (233)
T 3uc9_A           30 ILVLSDHPHNFLKTQFLQDLFHCS   53 (233)
T ss_dssp             EEEEEEGGGHHHHHHHHHHHHCCC
T ss_pred             eEEEecCcccccHHHHHHHHhccc
Confidence            334445999999999999999864

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.11  E-value=0.004  Score=44.12  Aligned_cols=25  Identities=20%  Similarity=0.243  Sum_probs=21.8

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhc
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      ...+.|.++|.+||||||+.+.|..
T Consensus        10 ~~~~iIgltG~~GSGKSTva~~L~~   34 (192)
T 2grj_A           10 HHHMVIGVTGKIGTGKSTVCEILKN   34 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHH
Confidence            3457899999999999999999865

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.08  E-value=0.0035  Score=45.21  Aligned_cols=21  Identities=33%  Similarity=0.536  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028792           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~   30 (203)
                      -++|.|++|+|||+|++.+..
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~   67 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAK   67 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999864

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=96.07  E-value=0.003  Score=47.60  Aligned_cols=22  Identities=41%  Similarity=0.480  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      -.+++.|+||+|||+|++.+..
T Consensus        55 ~~vll~Gp~GtGKT~la~~la~   76 (297)
T 3b9p_A           55 KGLLLFGPPGNGKTLLARAVAT   76 (297)
T ss_dssp             SEEEEESSSSSCHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHH
Confidence            5789999999999999999976

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.07  E-value=0.0034  Score=46.26  Aligned_cols=22  Identities=36%  Similarity=0.463  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      -.+++.|++|+|||+|++.+..
T Consensus        40 ~~vll~G~~GtGKT~la~~la~   61 (262)
T 2qz4_A           40 KGALLLGPPGCGKTLLAKAVAT   61 (262)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            4589999999999999999975

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=96.06  E-value=0.0033  Score=47.07  Aligned_cols=23  Identities=35%  Similarity=0.489  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~   31 (203)
                      -.+++.|++|+|||+|++.+...
T Consensus        52 ~~~ll~G~~GtGKT~la~~la~~   74 (285)
T 3h4m_A           52 KGILLYGPPGTGKTLLAKAVATE   74 (285)
T ss_dssp             SEEEEESSSSSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            46999999999999999999753

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=96.06  E-value=0.0043  Score=51.01  Aligned_cols=23  Identities=35%  Similarity=0.546  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~   32 (203)
                      -++++|+.|+|||||++.|.+-.
T Consensus        27 i~gLiGpNGaGKSTLlkiL~Gl~   49 (538)
T 3ozx_A           27 ILGVLGKNGVGKTTVLKILAGEI   49 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            36899999999999999998743

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=96.04  E-value=0.005  Score=50.68  Aligned_cols=23  Identities=26%  Similarity=0.377  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~   32 (203)
                      .++++|+.|+|||||++.|.+-.
T Consensus        49 ~~~LvG~NGaGKSTLlk~l~Gl~   71 (538)
T 1yqt_A           49 VVGIVGPNGTGKSTAVKILAGQL   71 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998743

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=96.04  E-value=0.0034  Score=47.48  Aligned_cols=22  Identities=27%  Similarity=0.199  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      .-+++.|+||+|||+|++.+..
T Consensus        37 ~~lLl~GppGtGKT~la~aiA~   58 (293)
T 3t15_A           37 LILGIWGGKGQGKSFQCELVFR   58 (293)
T ss_dssp             SEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4677889999999999999875

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=96.02  E-value=0.0043  Score=45.26  Aligned_cols=25  Identities=20%  Similarity=0.197  Sum_probs=21.6

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhc
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      .....|+|+|++|+||||+.+.|..
T Consensus        14 ~~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           14 MKTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHH
Confidence            4557899999999999999998864

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=95.99  E-value=0.0035  Score=47.57  Aligned_cols=23  Identities=30%  Similarity=0.491  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~   31 (203)
                      -.|++.|++|+|||+|++.+...
T Consensus        50 ~~vLL~Gp~GtGKT~la~ala~~   72 (301)
T 3cf0_A           50 KGVLFYGPPGCGKTLLAKAIANE   72 (301)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCcCHHHHHHHHHHH
Confidence            35899999999999999999863

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=95.97  E-value=0.004  Score=48.67  Aligned_cols=19  Identities=32%  Similarity=0.525  Sum_probs=17.3

Q ss_pred             EEEEcCCCCcHHHHHHHHh
Q 028792           11 LLLIGDSGVGKSCLLLRFA   29 (203)
Q Consensus        11 i~i~G~~~~GKSsli~~l~   29 (203)
                      .+|+|+.|+|||||++++.
T Consensus        26 ~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           26 TVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            5689999999999999986

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=95.97  E-value=0.0045  Score=44.01  Aligned_cols=24  Identities=42%  Similarity=0.645  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCC
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~   32 (203)
                      .-|+|+|++|+|||+|...|...-
T Consensus        35 ~~ilI~GpsGsGKStLA~~La~~g   58 (205)
T 2qmh_A           35 LGVLITGDSGVGKSETALELVQRG   58 (205)
T ss_dssp             EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhC
Confidence            358999999999999999998643

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=95.96  E-value=0.0052  Score=51.29  Aligned_cols=23  Identities=39%  Similarity=0.540  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~   32 (203)
                      .++++|+.|+|||||++.|.+-.
T Consensus       105 i~~LvGpNGaGKSTLLkiL~Gll  127 (608)
T 3j16_B          105 VLGLVGTNGIGKSTALKILAGKQ  127 (608)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            47899999999999999998643

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=95.96  E-value=0.011  Score=45.39  Aligned_cols=23  Identities=26%  Similarity=0.417  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~   31 (203)
                      -.+++.|++|+|||+|++.+...
T Consensus        56 ~~vll~G~~GtGKT~la~~ia~~   78 (338)
T 3pfi_A           56 DHILFSGPAGLGKTTLANIISYE   78 (338)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHHH
Confidence            46899999999999999999653

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=95.94  E-value=0.0041  Score=51.65  Aligned_cols=23  Identities=30%  Similarity=0.372  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~   32 (203)
                      .++++|++|+|||||++.|.+-.
T Consensus       371 ~~~ivG~sGsGKSTLl~~l~g~~  393 (582)
T 3b60_A          371 TVALVGRSGSGKSTIASLITRFY  393 (582)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTTT
T ss_pred             EEEEECCCCCCHHHHHHHHhhcc
Confidence            58999999999999999998743

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=95.94  E-value=0.0038  Score=50.52  Aligned_cols=21  Identities=33%  Similarity=0.479  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028792           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~   30 (203)
                      -++|+|++|+|||||++.|.+
T Consensus        31 ~~~liG~nGsGKSTLl~~l~G   51 (483)
T 3euj_A           31 VTTLSGGNGAGKSTTMAGFVT   51 (483)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHhc
Confidence            478999999999999999864

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=95.92  E-value=0.0039  Score=47.71  Aligned_cols=22  Identities=27%  Similarity=0.487  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      -.+++.|++|+|||+|++.+.+
T Consensus        38 ~~lll~G~~GtGKT~la~~i~~   59 (324)
T 1l8q_A           38 NPIFIYGSVGTGKTHLLQAAGN   59 (324)
T ss_dssp             SSEEEECSSSSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHH
Confidence            4589999999999999999875

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=95.91  E-value=0.0042  Score=49.44  Aligned_cols=23  Identities=22%  Similarity=0.258  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      ..-|+++|++||||||+.++|..
T Consensus       258 ~~lIil~G~pGSGKSTla~~L~~  280 (416)
T 3zvl_A          258 PEVVVAVGFPGAGKSTFIQEHLV  280 (416)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHTG
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            35688999999999999999975

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=95.91  E-value=0.0043  Score=46.45  Aligned_cols=21  Identities=38%  Similarity=0.479  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028792           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~   30 (203)
                      -++|+|++|+|||||+..+..
T Consensus        32 i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           32 VGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            478999999999999999874

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=95.88  E-value=0.0069  Score=45.81  Aligned_cols=22  Identities=36%  Similarity=0.546  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      -.+++.|++|+|||++++.+..
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~   69 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAA   69 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            3699999999999999999875

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=95.85  E-value=0.0062  Score=46.07  Aligned_cols=23  Identities=26%  Similarity=0.601  Sum_probs=19.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      ...+++.|+||+|||++++.+..
T Consensus        67 ~~~vll~G~~GtGKT~la~~la~   89 (309)
T 3syl_A           67 TLHMSFTGNPGTGKTTVALKMAG   89 (309)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999987653

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=95.83  E-value=0.0051  Score=43.62  Aligned_cols=21  Identities=33%  Similarity=0.357  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028792           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~   30 (203)
                      .|+|.|++||||||+.+.|..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAA   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999864

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=95.82  E-value=0.0068  Score=50.58  Aligned_cols=23  Identities=22%  Similarity=0.367  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~   32 (203)
                      .++++|+.|+|||||++.|.+-.
T Consensus       119 ~~~LiG~NGsGKSTLlkiL~Gll  141 (607)
T 3bk7_A          119 VVGIVGPNGTGKTTAVKILAGQL  141 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCChHHHHHHHHhCCC
Confidence            47899999999999999998743

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=95.82  E-value=0.0048  Score=49.40  Aligned_cols=23  Identities=43%  Similarity=0.511  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~   32 (203)
                      +++|+|++|+|||||++.+.+..
T Consensus       159 ~~~IvG~sGsGKSTLl~~Iag~~  181 (438)
T 2dpy_A          159 RMGLFAGSGVGKSVLLGMMARYT  181 (438)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhccc
Confidence            58899999999999999998753

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=95.81  E-value=0.0046  Score=46.90  Aligned_cols=85  Identities=15%  Similarity=0.082  Sum_probs=46.7

Q ss_pred             EEEEEEeCCChhhhchh----hhcccc--CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc
Q 028792           57 IKLQIWDTAGQERFRTI----TSSYYR--GAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKV  130 (203)
Q Consensus        57 ~~~~i~D~~g~~~~~~~----~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~  130 (203)
                      ..+.++||+|.......    ....+.  ..+.+++|+|++..  ...+..+...+.   .-+ ..-+++||.|....  
T Consensus       183 ~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~---~l~-~~giVltk~D~~~~--  254 (296)
T 2px0_A          183 YDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFS---SVP-VNQYIFTKIDETTS--  254 (296)
T ss_dssp             SSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTS---SSC-CCEEEEECTTTCSC--
T ss_pred             CCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHh---cCC-CCEEEEeCCCcccc--
Confidence            46889999996543221    112222  36788999987642  223333322222   111 23556799996532  


Q ss_pred             cCHHHHHHHHHHcCCCEEEEe
Q 028792          131 VSYETAKAFADEIGIPFMETS  151 (203)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~S  151 (203)
                        .-.+.......++++..++
T Consensus       255 --~g~~~~~~~~~~~pi~~i~  273 (296)
T 2px0_A          255 --LGSVFNILAESKIGVGFMT  273 (296)
T ss_dssp             --CHHHHHHHHTCSCCCSEEC
T ss_pred             --hhHHHHHHHHHCcCEEEEE
Confidence              2245566677787765554

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=95.81  E-value=0.0066  Score=50.45  Aligned_cols=23  Identities=35%  Similarity=0.446  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~   32 (203)
                      .++++|++|+|||||++.|.+-.
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~~  393 (582)
T 3b5x_A          371 TVALVGRSGSGKSTIANLFTRFY  393 (582)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999998743

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=95.77  E-value=0.0053  Score=46.32  Aligned_cols=22  Identities=41%  Similarity=0.694  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      -.+++.|+||+|||++++.+..
T Consensus        51 ~~vll~G~~GtGKT~la~~la~   72 (310)
T 1ofh_A           51 KNILMIGPTGVGKTEIARRLAK   72 (310)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999875

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=95.77  E-value=0.0069  Score=50.56  Aligned_cols=23  Identities=22%  Similarity=0.460  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~   32 (203)
                      .++|+|+.|+|||||++.|.+-.
T Consensus       384 i~~i~G~NGsGKSTLlk~l~Gl~  406 (607)
T 3bk7_A          384 VIGIVGPNGIGKTTFVKMLAGVE  406 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998754

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=95.76  E-value=0.0056  Score=44.58  Aligned_cols=21  Identities=33%  Similarity=0.487  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028792           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~   30 (203)
                      -++++|++|+|||||+..+..
T Consensus        25 ~~~i~G~~GsGKTtl~~~~~~   45 (247)
T 2dr3_A           25 VVLLSGGPGTGKTIFSQQFLW   45 (247)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999887753

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=95.75  E-value=0.008  Score=44.73  Aligned_cols=25  Identities=32%  Similarity=0.494  Sum_probs=21.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcC
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~~   31 (203)
                      ..-.+++.|++|+|||+|++.+...
T Consensus        63 ~~~~vLl~G~~GtGKT~la~~ia~~   87 (272)
T 1d2n_A           63 PLVSVLLEGPPHSGKTALAAKIAEE   87 (272)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHH
Confidence            4467999999999999999999763

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=95.75  E-value=0.0047  Score=51.51  Aligned_cols=23  Identities=26%  Similarity=0.417  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~   32 (203)
                      .++++|++|+|||||++.|.+-.
T Consensus       383 ~~~ivG~sGsGKSTll~~l~g~~  405 (598)
T 3qf4_B          383 KVALVGPTGSGKTTIVNLLMRFY  405 (598)
T ss_dssp             EEEEECCTTSSTTHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Confidence            58999999999999999988643

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=95.75  E-value=0.007  Score=46.40  Aligned_cols=22  Identities=32%  Similarity=0.566  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      ..|+|+|++|||||||...|..
T Consensus         6 ~~i~i~GptGsGKTtla~~La~   27 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALAD   27 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999999864

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=95.75  E-value=0.005  Score=47.87  Aligned_cols=22  Identities=18%  Similarity=0.377  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      -.++|.|++|+|||||++.+..
T Consensus        46 ~~vli~G~~G~GKTtl~~~l~~   67 (386)
T 2qby_A           46 NNIFIYGLTGTGKTAVVKFVLS   67 (386)
T ss_dssp             CCEEEEECTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999875

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=95.73  E-value=0.0073  Score=49.69  Aligned_cols=23  Identities=17%  Similarity=0.414  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~   32 (203)
                      .++|+|+.|+|||||++.|.+-.
T Consensus       296 i~~i~G~nGsGKSTLl~~l~Gl~  318 (538)
T 3ozx_A          296 IIGILGPNGIGKTTFARILVGEI  318 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            37899999999999999998754

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.73  E-value=0.0053  Score=48.97  Aligned_cols=21  Identities=38%  Similarity=0.621  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028792           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~   30 (203)
                      -|++.||||+|||+|++++.+
T Consensus       208 GiLL~GPPGtGKT~lakAiA~  228 (428)
T 4b4t_K          208 GVLLYGPPGTGKTMLVKAVAN  228 (428)
T ss_dssp             EEEEESCTTTTHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            599999999999999999986

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=95.70  E-value=0.0084  Score=49.32  Aligned_cols=23  Identities=22%  Similarity=0.460  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~   32 (203)
                      .++|+|+.|+|||||++.|.+-.
T Consensus       314 ~~~i~G~NGsGKSTLlk~l~Gl~  336 (538)
T 1yqt_A          314 VIGIVGPNGIGKTTFVKMLAGVE  336 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998754

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=95.70  E-value=0.0083  Score=46.54  Aligned_cols=23  Identities=30%  Similarity=0.593  Sum_probs=20.0

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHh
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFA   29 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~   29 (203)
                      ...+|+++|++|+||||+.+.|.
T Consensus        23 ~~~~i~l~G~~G~GKTTl~~~la   45 (359)
T 2ga8_A           23 YRVCVILVGSPGSGKSTIAEELC   45 (359)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CeeEEEEECCCCCcHHHHHHHHH
Confidence            34689999999999999998775

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=95.69  E-value=0.0041  Score=51.63  Aligned_cols=22  Identities=32%  Similarity=0.372  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~   31 (203)
                      .++++|++|+|||||++.+.+-
T Consensus       369 ~~~ivG~sGsGKSTll~~l~g~  390 (578)
T 4a82_A          369 TVAFVGMSGGGKSTLINLIPRF  390 (578)
T ss_dssp             EEEEECSTTSSHHHHHTTTTTS
T ss_pred             EEEEECCCCChHHHHHHHHhcC
Confidence            5789999999999999988764

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=95.69  E-value=0.0067  Score=43.26  Aligned_cols=19  Identities=47%  Similarity=0.651  Sum_probs=17.1

Q ss_pred             EEEEcCCCCcHHHHHHHHh
Q 028792           11 LLLIGDSGVGKSCLLLRFA   29 (203)
Q Consensus        11 i~i~G~~~~GKSsli~~l~   29 (203)
                      .+|+|+.|+||||++.++.
T Consensus        26 ~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           26 NLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHH
Confidence            5789999999999999974

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.69  E-value=0.0054  Score=47.25  Aligned_cols=22  Identities=32%  Similarity=0.662  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~   31 (203)
                      .+++.|++|+||||+++.+...
T Consensus        48 ~~ll~Gp~G~GKTtla~~la~~   69 (340)
T 1sxj_C           48 HLLFYGPPGTGKTSTIVALARE   69 (340)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999998753

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=95.68  E-value=0.0057  Score=47.70  Aligned_cols=22  Identities=27%  Similarity=0.484  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~   31 (203)
                      .++|.|++|+|||+|++.+...
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~   67 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWEL   67 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999998753

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=95.67  E-value=0.006  Score=46.48  Aligned_cols=86  Identities=24%  Similarity=0.201  Sum_probs=47.3

Q ss_pred             EEEEEEeCCChhhhchh-------hhc-----cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCC
Q 028792           57 IKLQIWDTAGQERFRTI-------TSS-----YYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCD  124 (203)
Q Consensus        57 ~~~~i~D~~g~~~~~~~-------~~~-----~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D  124 (203)
                      ..+.++|+||.......       ...     .-...+.+++|+|+....  +.+... ..+....   ...-+|+||.|
T Consensus       187 ~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~~--~~l~~a-~~~~~~~---~i~gvVlTk~D  260 (306)
T 1vma_A          187 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQ--NGLVQA-KIFKEAV---NVTGIILTKLD  260 (306)
T ss_dssp             CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHH--HHHHHH-HHHHHHS---CCCEEEEECGG
T ss_pred             CCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH--HHHHHH-HHHHhcC---CCCEEEEeCCC
Confidence            35789999995321110       011     123478899999986332  112221 2222221   23356789999


Q ss_pred             CCCCcccCHHHHHHHHHHcCCCEEEEec
Q 028792          125 LTANKVVSYETAKAFADEIGIPFMETSA  152 (203)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  152 (203)
                      ....    .-.+.......++|+..+..
T Consensus       261 ~~~~----gG~~l~~~~~~~~Pi~~i~~  284 (306)
T 1vma_A          261 GTAK----GGITLAIARELGIPIKFIGV  284 (306)
T ss_dssp             GCSC----TTHHHHHHHHHCCCEEEEEC
T ss_pred             Cccc----hHHHHHHHHHHCCCEEEEeC
Confidence            5422    22366777788888877754

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=95.66  E-value=0.006  Score=46.79  Aligned_cols=23  Identities=39%  Similarity=0.540  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~   31 (203)
                      -.|++.|+||+|||+|++.+...
T Consensus        46 ~~iLL~GppGtGKT~la~ala~~   68 (322)
T 1xwi_A           46 RGILLFGPPGTGKSYLAKAVATE   68 (322)
T ss_dssp             SEEEEESSSSSCHHHHHHHHHHH
T ss_pred             ceEEEECCCCccHHHHHHHHHHH
Confidence            46999999999999999999863

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.66  E-value=0.0059  Score=48.77  Aligned_cols=23  Identities=30%  Similarity=0.369  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~   31 (203)
                      -.|++.||||+|||+|++++.+.
T Consensus       216 rGvLLyGPPGTGKTllAkAiA~e  238 (434)
T 4b4t_M          216 KGALMYGPPGTGKTLLARACAAQ  238 (434)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CeeEEECcCCCCHHHHHHHHHHH
Confidence            46999999999999999999863

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=95.65  E-value=0.0086  Score=45.59  Aligned_cols=23  Identities=22%  Similarity=0.463  Sum_probs=19.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      ..-|+|+|++|||||+|...|..
T Consensus        10 ~~~i~i~GptgsGKt~la~~La~   32 (316)
T 3foz_A           10 PKAIFLMGPTASGKTALAIELRK   32 (316)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcEEEEECCCccCHHHHHHHHHH
Confidence            34588999999999999999974

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=95.63  E-value=0.0073  Score=42.25  Aligned_cols=21  Identities=29%  Similarity=0.368  Sum_probs=19.4

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 028792           11 LLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        11 i~i~G~~~~GKSsli~~l~~~   31 (203)
                      ++|+|.++||||+|..+|...
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~   22 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCCcHHHHHHHHHhc
Confidence            789999999999999999865

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.60  E-value=0.0063  Score=48.62  Aligned_cols=22  Identities=36%  Similarity=0.451  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      --|++.||||+|||+|++++.+
T Consensus       216 rGvLL~GPPGtGKTllAkAiA~  237 (437)
T 4b4t_L          216 KGVLLYGPPGTGKTLLAKAVAA  237 (437)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHH
Confidence            4699999999999999999986

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=95.59  E-value=0.0071  Score=46.67  Aligned_cols=22  Identities=27%  Similarity=0.587  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      .-|+|+|++|||||||...|..
T Consensus         8 ~lI~I~GptgSGKTtla~~La~   29 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAK   29 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHH
Confidence            4689999999999999998863

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=95.58  E-value=0.0067  Score=47.08  Aligned_cols=22  Identities=27%  Similarity=0.256  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~   31 (203)
                      -+.|+|++|+|||||+..+...
T Consensus       133 i~~I~G~~GsGKTTL~~~l~~~  154 (349)
T 1pzn_A          133 ITEVFGEFGSGKTQLAHTLAVM  154 (349)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999864

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=95.57  E-value=0.0074  Score=46.20  Aligned_cols=22  Identities=41%  Similarity=0.504  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      -.+++.|+||+|||+|++.+..
T Consensus        52 ~~vLl~GppGtGKT~la~aia~   73 (322)
T 3eie_A           52 SGILLYGPPGTGKSYLAKAVAT   73 (322)
T ss_dssp             CEEEEECSSSSCHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHH
Confidence            4699999999999999999975

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=95.55  E-value=0.095  Score=37.30  Aligned_cols=85  Identities=9%  Similarity=0.122  Sum_probs=54.5

Q ss_pred             EEEEEEeCCCh-hhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHH
Q 028792           57 IKLQIWDTAGQ-ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYET  135 (203)
Q Consensus        57 ~~~~i~D~~g~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~  135 (203)
                      +.+.++|+|+. ..  ......+..+|.+|+++..+ ..++..+...++.+....  +.++.+|+|+.|....  ....+
T Consensus        68 yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~~~--~~~~~  140 (209)
T 3cwq_A           68 YQNIVIDTQARPED--EDLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG--NNRFRILLTIIPPYPS--KDGDE  140 (209)
T ss_dssp             CSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC--SSSEEEEECSBCCTTS--CHHHH
T ss_pred             CCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc--CCCEEEEEEecCCccc--hHHHH
Confidence            56889999985 32  23445677899999999865 455566666666665533  4568899999986430  11344


Q ss_pred             HHHHHHHcCCCEE
Q 028792          136 AKAFADEIGIPFM  148 (203)
Q Consensus       136 ~~~~~~~~~~~~~  148 (203)
                      ..+..+..+.+++
T Consensus       141 ~~~~l~~~g~~v~  153 (209)
T 3cwq_A          141 ARQLLTTAGLPLF  153 (209)
T ss_dssp             HHHHHHHTTCCBC
T ss_pred             HHHHHHHcCCchh
Confidence            5555555665554

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=95.55  E-value=0.0055  Score=50.96  Aligned_cols=22  Identities=27%  Similarity=0.450  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~   31 (203)
                      .++++|++|+|||||++.|.+-
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~  392 (587)
T 3qf4_A          371 LVAVLGETGSGKSTLMNLIPRL  392 (587)
T ss_dssp             EEEEECSSSSSHHHHHHTTTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999988763

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=95.51  E-value=0.0098  Score=49.62  Aligned_cols=23  Identities=30%  Similarity=0.598  Sum_probs=20.4

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCCC
Q 028792           11 LLLIGDSGVGKSCLLLRFADDSY   33 (203)
Q Consensus        11 i~i~G~~~~GKSsli~~l~~~~~   33 (203)
                      ++|+|+.|+|||||++.|.+-..
T Consensus       381 v~iiG~NGsGKSTLlk~l~Gl~~  403 (608)
T 3j16_B          381 LVMMGENGTGKTTLIKLLAGALK  403 (608)
T ss_dssp             EEEESCTTSSHHHHHHHHHTSSC
T ss_pred             EEEECCCCCcHHHHHHHHhcCCC
Confidence            68999999999999999987543

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=95.51  E-value=0.0086  Score=46.13  Aligned_cols=21  Identities=43%  Similarity=0.681  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028792           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~   30 (203)
                      -|+|+|++|||||+|...|..
T Consensus        42 lIvI~GPTgsGKTtLa~~LA~   62 (339)
T 3a8t_A           42 LLVLMGATGTGKSRLSIDLAA   62 (339)
T ss_dssp             EEEEECSTTSSHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999975

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=95.50  E-value=0.0083  Score=45.78  Aligned_cols=22  Identities=23%  Similarity=0.388  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~   31 (203)
                      -|+|+|++|||||+|...|...
T Consensus         5 ~i~i~GptgsGKt~la~~La~~   26 (322)
T 3exa_A            5 LVAIVGPTAVGKTKTSVMLAKR   26 (322)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEECCCcCCHHHHHHHHHHh
Confidence            5789999999999999999753

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.48  E-value=0.0073  Score=46.48  Aligned_cols=22  Identities=27%  Similarity=0.662  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~   31 (203)
                      .+++.|++|+|||++++.+...
T Consensus        60 ~~ll~G~~G~GKT~la~~la~~   81 (353)
T 1sxj_D           60 HMLFYGPPGTGKTSTILALTKE   81 (353)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3899999999999999998753

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.47  E-value=0.0074  Score=47.64  Aligned_cols=22  Identities=32%  Similarity=0.442  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      --|++.||||+|||.|++++.+
T Consensus       183 rGvLL~GPPGTGKTllAkAiA~  204 (405)
T 4b4t_J          183 KGVILYGPPGTGKTLLARAVAH  204 (405)
T ss_dssp             CCEEEESCSSSSHHHHHHHHHH
T ss_pred             CceEEeCCCCCCHHHHHHHHHH
Confidence            4689999999999999999976

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=95.47  E-value=0.14  Score=38.89  Aligned_cols=21  Identities=24%  Similarity=0.403  Sum_probs=17.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 028792           11 LLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        11 i~i~G~~~~GKSsli~~l~~~   31 (203)
                      +++.|++|+|||++++.+...
T Consensus        51 ~L~~G~~G~GKT~la~~la~~   71 (324)
T 3u61_B           51 ILHSPSPGTGKTTVAKALCHD   71 (324)
T ss_dssp             EEECSSTTSSHHHHHHHHHHH
T ss_pred             EEeeCcCCCCHHHHHHHHHHH
Confidence            455667999999999999753

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=95.46  E-value=0.0075  Score=46.80  Aligned_cols=21  Identities=29%  Similarity=0.667  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028792           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~   30 (203)
                      .+++.|+||+|||+|++.+..
T Consensus        72 ~vLl~GppGtGKT~la~~la~   92 (368)
T 3uk6_A           72 AVLIAGQPGTGKTAIAMGMAQ   92 (368)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999874

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=95.45  E-value=0.0064  Score=46.53  Aligned_cols=24  Identities=13%  Similarity=-0.035  Sum_probs=20.9

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhc
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      ..-.++|.|+||+|||++++.+..
T Consensus        44 ~~~~lli~GpPGTGKT~~v~~v~~   67 (318)
T 3te6_A           44 QNKLFYITNADDSTKFQLVNDVMD   67 (318)
T ss_dssp             CCCEEEEECCCSHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHH
Confidence            345789999999999999999874

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=95.45  E-value=0.0035  Score=46.51  Aligned_cols=21  Identities=38%  Similarity=0.591  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028792           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~   30 (203)
                      .+++.|++|+|||+|++.+..
T Consensus        46 ~vll~G~~GtGKT~la~~la~   66 (268)
T 2r62_A           46 GVLLVGPPGTGKTLLAKAVAG   66 (268)
T ss_dssp             CCCCBCSSCSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            488999999999999999975

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=95.43  E-value=0.0073  Score=46.95  Aligned_cols=23  Identities=26%  Similarity=0.278  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      .-.++|.|++|+|||+|++.+..
T Consensus        44 ~~~vll~G~~G~GKT~l~~~~~~   66 (387)
T 2v1u_A           44 PSNALLYGLTGTGKTAVARLVLR   66 (387)
T ss_dssp             CCCEEECBCTTSSHHHHHHHHHH
T ss_pred             CCcEEEECCCCCCHHHHHHHHHH
Confidence            34789999999999999999875

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=95.42  E-value=0.0093  Score=45.43  Aligned_cols=23  Identities=48%  Similarity=0.624  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      .-.+++.|++|+|||+|+..+..
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~  174 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAH  174 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998875

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=95.39  E-value=0.0068  Score=44.93  Aligned_cols=25  Identities=20%  Similarity=0.238  Sum_probs=21.4

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcC
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~~   31 (203)
                      +...|+|.|.+||||||+++.|...
T Consensus        23 ~~~~I~ieG~~GsGKST~~~~L~~~   47 (263)
T 1p5z_B           23 RIKKISIEGNIAAGKSTFVNILKQL   47 (263)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHh
Confidence            4468999999999999999988753

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=95.38  E-value=0.0085  Score=48.42  Aligned_cols=22  Identities=36%  Similarity=0.604  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      -+++++|+||+|||++++.|..
T Consensus       202 ~~~LL~G~pG~GKT~la~~la~  223 (468)
T 3pxg_A          202 NNPVLIGEPGVGKTAIAEGLAQ  223 (468)
T ss_dssp             CEEEEESCTTTTTHHHHHHHHH
T ss_pred             CCeEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999999864

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=95.33  E-value=0.056  Score=42.06  Aligned_cols=20  Identities=30%  Similarity=0.355  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 028792           10 KLLLIGDSGVGKSCLLLRFA   29 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~   29 (203)
                      -.+++|+.|+|||||++.+.
T Consensus        28 ~~~i~G~nG~GKttll~ai~   47 (359)
T 2o5v_A           28 VTGIYGENGAGKTNLLEAAY   47 (359)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHH
Confidence            46899999999999999986

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=95.31  E-value=0.01  Score=43.98  Aligned_cols=23  Identities=30%  Similarity=0.457  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~   31 (203)
                      ..|+|.|++|+|||++++.+...
T Consensus        30 ~~vll~G~~GtGKt~la~~i~~~   52 (265)
T 2bjv_A           30 KPVLIIGERGTGKELIASRLHYL   52 (265)
T ss_dssp             SCEEEECCTTSCHHHHHHHHHHT
T ss_pred             CCEEEECCCCCcHHHHHHHHHHh
Confidence            46899999999999999999754

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=95.31  E-value=0.0094  Score=46.34  Aligned_cols=23  Identities=39%  Similarity=0.521  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~   31 (203)
                      -.|++.|+||+|||+|++.+...
T Consensus        85 ~~iLL~GppGtGKT~la~ala~~  107 (355)
T 2qp9_X           85 SGILLYGPPGTGKSYLAKAVATE  107 (355)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHHHH
Confidence            35899999999999999999753

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=95.30  E-value=0.012  Score=42.99  Aligned_cols=22  Identities=27%  Similarity=0.403  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      .-|+|.|..||||||+++.|..
T Consensus         3 ~~i~~~G~~g~GKtt~~~~l~~   24 (241)
T 2ocp_A            3 RRLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Confidence            4689999999999999999874

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=95.30  E-value=0.0097  Score=46.29  Aligned_cols=23  Identities=39%  Similarity=0.543  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      ...+++.|+||+|||++.+.+..
T Consensus        51 ~~~vll~GppGtGKT~la~~ia~   73 (363)
T 3hws_A           51 KSNILLIGPTGSGKTLLAETLAR   73 (363)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999875

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=95.29  E-value=0.0087  Score=48.71  Aligned_cols=22  Identities=41%  Similarity=0.658  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~   31 (203)
                      -++++|++|+|||+|++.+.+.
T Consensus        66 GvLL~GppGtGKTtLaraIa~~   87 (499)
T 2dhr_A           66 GVLLVGPPGVGKTHLARAVAGE   87 (499)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999999863

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=95.29  E-value=0.011  Score=42.63  Aligned_cols=23  Identities=30%  Similarity=0.241  Sum_probs=19.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      -.-|+|.|.+||||||+++.|..
T Consensus         6 g~~i~~eG~~gsGKsT~~~~l~~   28 (213)
T 4edh_A            6 GLFVTLEGPEGAGKSTNRDYLAE   28 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHH
Confidence            35689999999999999999863

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=95.27  E-value=0.01  Score=46.43  Aligned_cols=22  Identities=36%  Similarity=0.611  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      ..+++.|++|+|||++++.+..
T Consensus        73 ~~ill~Gp~GtGKT~la~~la~   94 (376)
T 1um8_A           73 SNILLIGPTGSGKTLMAQTLAK   94 (376)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999999875

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=95.26  E-value=0.0099  Score=46.21  Aligned_cols=23  Identities=30%  Similarity=0.375  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      .-.|++.|++|+|||+|++.+..
T Consensus       117 ~~~vLl~GppGtGKT~la~aia~  139 (357)
T 3d8b_A          117 PKGILLFGPPGTGKTLIGKCIAS  139 (357)
T ss_dssp             CSEEEEESSTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999975

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	203
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	2e-63
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	6e-59
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	4e-57
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	5e-57
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	6e-56
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	2e-53
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	4e-53
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	5e-53
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	3e-52
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	3e-51
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	6e-49
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	2e-48
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	3e-48
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	2e-44
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	1e-42
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	3e-42
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	2e-40
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	3e-40
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	2e-39
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	3e-39
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	6e-39
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	3e-38
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	3e-38
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	6e-38
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	7e-38
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	1e-37
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	1e-37
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	4e-37
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	6e-36
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	3e-35
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	7e-34
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	1e-33
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	3e-33
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	6e-33
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	7e-33
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	7e-33
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	2e-32
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	1e-31
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	8e-31
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	2e-29
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	5e-29
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	6e-29
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	2e-28
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	3e-28
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	1e-27
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	6e-27
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	7e-26
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	5e-25
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	1e-24
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	2e-24
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	2e-24
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	3e-24
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	4e-23
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	3e-20
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	4e-19
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	1e-17
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	4e-13
d2gj8a1	161	c.37.1.8 (A:216-376) Probable tRNA modification GT	1e-07
d1tq4a_	400	c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (	4e-06
d2qn6a3	205	c.37.1.8 (A:2-206) Initiation factor eIF2 gamma su	1e-04
d1udxa2	180	c.37.1.8 (A:157-336) Obg GTP-binding protein middl	2e-04
d1puia_	188	c.37.1.8 (A:) Probable GTPase EngB {Escherichia co	7e-04
d2cxxa1	184	c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc	7e-04
d1h65a_	257	c.37.1.8 (A:) Chloroplast protein translocon GTPas	9e-04
d1mkya2	186	c.37.1.8 (A:173-358) Probable GTPase Der, N-termin	0.003
d1xzpa2	160	c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog	0.003

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  191 bits (487), Expect = 2e-63
 Identities = 102/170 (60%), Positives = 137/170 (80%)

Query: 4   EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWD 63
            YDYLFKLLLIGDSGVGK+C+L RF++D++  ++ISTIG+DFKIRT+E DGK IKLQIWD
Sbjct: 2   TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWD 61

Query: 64  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKC 123
           TAGQERFRTIT++YYRGA GI++VYD+T+++SF+N++ W+  I+ +AS +V K+++GNKC
Sbjct: 62  TAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKC 121

Query: 124 DLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRM 173
           D+   + VS E  +  A + GI FMETSAK+  NVE AF  +A  IK +M
Sbjct: 122 DVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKM 171

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  181 bits (460), Expect = 6e-59
 Identities = 133/194 (68%), Positives = 153/194 (78%), Gaps = 4/194 (2%)

Query: 3   NEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIW 62
           +EYDYLFKLLLIG+SGVGKSCLLLRF+DD+Y   YISTIGVDFKI+TVE DGKT+KLQIW
Sbjct: 1   SEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIW 60

Query: 63  DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNK 122
           DTAGQERFRTITSSYYRG+HGII+VYDVTDQESFN VK WL EIDRYA+  V KLLVGNK
Sbjct: 61  DTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNK 120

Query: 123 CDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNA 182
           CDL   +VV Y+ AK FAD   +PF+ETSA  +TNVE AF+ MA  IK  M+ Q  +   
Sbjct: 121 CDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETT 180

Query: 183 RPP----TVQIRGQ 192
           +       V ++GQ
Sbjct: 181 QKKEDKGNVNLKGQ 194

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  176 bits (446), Expect = 4e-57
 Identities = 92/166 (55%), Positives = 130/166 (78%), Gaps = 1/166 (0%)

Query: 8   LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
           + K+LLIGDSGVGKSCLL+RF +D +  S+I+TIG+DFKI+TV+ +GK +KLQIWDTAGQ
Sbjct: 2   IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQ 61

Query: 68  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTA 127
           ERFRTIT++YYRGA GII+VYD+TD+ +F N+KQW   ++ +A++    LLVGNK D+  
Sbjct: 62  ERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME- 120

Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRM 173
            +VV+ +  +A A E+GIPF+E+SAK+  NV + F  +A  I+ ++
Sbjct: 121 TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 166

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  175 bits (445), Expect = 5e-57
 Identities = 84/166 (50%), Positives = 122/166 (73%)

Query: 4   EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWD 63
           +YD+LFK++LIG++GVGK+CL+ RF    +     +TIGVDF I+TVE +G+ +KLQIWD
Sbjct: 1   DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWD 60

Query: 64  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKC 123
           TAGQERFR+IT SYYR A+ +I+ YD+T +ESF  + +WL EI++YAS  V  +LVGNK 
Sbjct: 61  TAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKI 120

Query: 124 DLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
           DL   + VS + A+ F++   + ++ETSAK + NVE+ F+ +A  +
Sbjct: 121 DLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 166

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  173 bits (438), Expect = 6e-56
 Identities = 86/168 (51%), Positives = 125/168 (74%), Gaps = 1/168 (0%)

Query: 4   EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLE-SYISTIGVDFKIRTVEQDGKTIKLQIW 62
            YD  FK++L+GDSGVGK+CLL+RF D ++L  ++IST+G+DF+ + ++ DG  +KLQ+W
Sbjct: 2   FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMW 61

Query: 63  DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNK 122
           DTAGQERFR++T +YYR AH ++++YDVT++ SF+N++ WL EI  YA  +V  +L+GNK
Sbjct: 62  DTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNK 121

Query: 123 CDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIK 170
            D    +VV  E  +  A E G+PFMETSAK+  NV+ AF A+A  +K
Sbjct: 122 VDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELK 169

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  166 bits (422), Expect = 2e-53
 Identities = 87/175 (49%), Positives = 122/175 (69%)

Query: 5   YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDT 64
           YDYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  R+++ DGKTIK QIWDT
Sbjct: 1   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 60

Query: 65  AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCD 124
           AGQER+R ITS+YYRGA G ++VYD+    ++ NV++WL E+  +A  N+  +LVGNK D
Sbjct: 61  AGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 120

Query: 125 LTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPAS 179
           L   + V  + A+AFA++  + F+ETSA  +TNVE+AF  +   I   ++ +  +
Sbjct: 121 LRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIA 175

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  165 bits (419), Expect = 4e-53
 Identities = 86/168 (51%), Positives = 123/168 (73%)

Query: 5   YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDT 64
           +DY+FK+L+IG+S VGK+  L R+ADDS+  +++ST+G+DFK++T+ ++ K IKLQIWDT
Sbjct: 2   FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDT 61

Query: 65  AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCD 124
           AGQER+RTIT++YYRGA G I++YD+T++ESFN V+ W  +I  Y+ +N   LLVGNKCD
Sbjct: 62  AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCD 121

Query: 125 LTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
           +   +VVS E  +  AD +G  F E SAK   NV+Q F  +   I  +
Sbjct: 122 MEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEK 169

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  165 bits (418), Expect = 5e-53
 Identities = 83/165 (50%), Positives = 113/165 (68%)

Query: 5   YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDT 64
           Y Y+FK ++IGD GVGKSCLL +F +  ++     TIGV+F  R +E  G+ IKLQIWDT
Sbjct: 1   YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDT 60

Query: 65  AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCD 124
           AGQERFR +T SYYRGA G ++VYD+T + ++N++  WL +     + N   +L+GNK D
Sbjct: 61  AGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKAD 120

Query: 125 LTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
           L A + V+YE AK FA+E G+ F+E SAK+  NVE AF+  A  I
Sbjct: 121 LEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 165

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  163 bits (414), Expect = 3e-52
 Identities = 82/171 (47%), Positives = 118/171 (69%)

Query: 5   YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDT 64
           YD+LFK L+IG++G GKSCLL +F +  + +    TIGV+F  + +   GK +KLQIWDT
Sbjct: 2   YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDT 61

Query: 65  AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCD 124
           AGQERFR++T SYYRGA G ++VYD+T +E++N +  WL +    AS+N+  +L GNK D
Sbjct: 62  AGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKD 121

Query: 125 LTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMAS 175
           L A++ V++  A  FA E  + F+ETSA +  NVE+AF+  A  I N++ S
Sbjct: 122 LDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIES 172

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  161 bits (408), Expect = 3e-51
 Identities = 73/181 (40%), Positives = 115/181 (63%), Gaps = 11/181 (6%)

Query: 4   EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVE----------QD 53
           +YDYL KLL +GDSGVGK+  L R+ D+ +   +I+T+G+DF+ + V             
Sbjct: 1   DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGK 60

Query: 54  GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRY-ASE 112
              + LQ+WDTAGQERFR++T++++R A G ++++D+T Q+SF NV+ W++++      E
Sbjct: 61  AFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCE 120

Query: 113 NVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
           N + +L+GNK DL   + V+   A+  AD+ GIP+ ETSA +  NVE+A   +   I  R
Sbjct: 121 NPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKR 180

Query: 173 M 173
           M
Sbjct: 181 M 181

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  155 bits (392), Expect = 6e-49
 Identities = 90/167 (53%), Positives = 121/167 (72%)

Query: 7   YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG 66
           YLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R V  DGK IKLQIWDTAG
Sbjct: 2   YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAG 61

Query: 67  QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLT 126
           QE FR+IT SYYRGA G ++VYD+T +E+FN++  WL +  +++S N+  +L+GNK DL 
Sbjct: 62  QESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLE 121

Query: 127 ANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRM 173
           + + V  E  +AFA E G+ FMETSAK+A NVE+AF+  A  I  ++
Sbjct: 122 SRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKI 168

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  153 bits (388), Expect = 2e-48
 Identities = 77/171 (45%), Positives = 106/171 (61%), Gaps = 2/171 (1%)

Query: 4   EYDYL--FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQI 61
           + D L   K+L+IG+SGVGKS LLLRF DD++     +TIGVDFK++T+  DG   KL I
Sbjct: 1   DEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAI 60

Query: 62  WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGN 121
           WDTAGQERFRT+T SYYRGA G+I+VYDVT +++F  +  WLNE++ Y + N    ++  
Sbjct: 61  WDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVG 120

Query: 122 KCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
                 N+ V       FA +  + F+E SAK+   V+ AF  +   I   
Sbjct: 121 NKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQT 171

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  153 bits (386), Expect = 3e-48
 Identities = 69/161 (42%), Positives = 107/161 (66%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           FKL+ +G+  VGK+ L+ RF  DS+  +Y +TIG+DF  +T+  + +TI+LQ+WDTAGQE
Sbjct: 1   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 60

Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
           RFR++  SY R +   +VVYD+T+  SF    +W++++      +V  +LVGNK DL   
Sbjct: 61  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 120

Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
           + VS E  +  A E+ + F+ETSAK+  NV+Q F  +AA++
Sbjct: 121 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 161

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  143 bits (362), Expect = 2e-44
 Identities = 61/163 (37%), Positives = 102/163 (62%)

Query: 7   YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG 66
           Y FK++L+G+  VGK+ L+LR+ ++ + + +I+T+G  F  + +   GK + L IWDTAG
Sbjct: 2   YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAG 61

Query: 67  QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLT 126
           QERF  +   YYR ++G I+VYD+TD++SF  VK W+ E+ +     +   +VGNK DL 
Sbjct: 62  QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 121

Query: 127 ANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
             + VS + A+++A+ +G     TSAK    +E+ F+ +   +
Sbjct: 122 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 164

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  138 bits (349), Expect = 1e-42
 Identities = 63/163 (38%), Positives = 97/163 (59%), Gaps = 2/163 (1%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +K++++G  GVGKS L ++F   +++E Y  TI  DF  + +E D     L+I DTAG E
Sbjct: 4   YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTE 62

Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRY-ASENVNKLLVGNKCDLTA 127
           +F ++   Y +   G I+VY + +Q+SF ++K   ++I R    E V  +LVGNK DL +
Sbjct: 63  QFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLES 122

Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIK 170
            + VS    +A A+E G PFMETSAKS T V++ F  +   + 
Sbjct: 123 EREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMN 165

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score =  138 bits (347), Expect = 3e-42
 Identities = 65/166 (39%), Positives = 96/166 (57%), Gaps = 2/166 (1%)

Query: 8   LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
           L K++++G  GVGKS L L+F  D ++E Y  T   D   + V  DG+ +++ I DTAGQ
Sbjct: 4   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQIDILDTAGQ 62

Query: 68  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRY-ASENVNKLLVGNKCDLT 126
           E +  I  +Y+R   G + V+ +T+ ESF     +  +I R    ENV  LLVGNK DL 
Sbjct: 63  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 122

Query: 127 ANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
             + VS E AK  AD+  + ++ETSAK+  NV++ F  +   I+ R
Sbjct: 123 DKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRAR 168

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  133 bits (335), Expect = 2e-40
 Identities = 78/162 (48%), Positives = 108/162 (66%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           FKL+L+G+S VGKS L+LRF    + E   STIG  F  +TV  D  T+K +IWDTAGQE
Sbjct: 7   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66

Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
           R+ ++   YYRGA   IVVYD+T++ESF   K W+ E+ R AS N+   L GNK DL   
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126

Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIK 170
           + V ++ A+++AD+  + FMETSAK++ NV + FMA+A  + 
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 168

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  133 bits (334), Expect = 3e-40
 Identities = 67/169 (39%), Positives = 101/169 (59%), Gaps = 6/169 (3%)

Query: 6   DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTA 65
             LFK++L+GD GVGKS L+ R+  + +      TIGV+F  + +E DG  + +QIWDTA
Sbjct: 4   SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTA 63

Query: 66  GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASE----NVNKLLVGN 121
           GQERFR++ + +YRG+   ++ + V D +SF N+  W  E   YA      +   +++GN
Sbjct: 64  GQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGN 123

Query: 122 KCDLTANKVVSYETAKAFADEIG-IPFMETSAKSATNVEQAFMAMAASI 169
           K D++  + VS E A+A+  + G  P+ ETSAK ATNV  AF      +
Sbjct: 124 KIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 171

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  130 bits (328), Expect = 2e-39
 Identities = 67/163 (41%), Positives = 103/163 (63%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K+ L+GD+GVGKS ++ RF +DS+  +   TIG  F  +TV+   +  K  IWDTAG E
Sbjct: 5   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 64

Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
           RFR +   YYRG+   I+VYD+T +E+F+ +K W+ E+ ++   ++   + GNKCDLT  
Sbjct: 65  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 124

Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKN 171
           + V    AK +AD I   F+ETSAK+A N+ + F+ ++  I +
Sbjct: 125 REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIPS 167

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  131 bits (329), Expect = 3e-39
 Identities = 49/181 (27%), Positives = 85/181 (46%), Gaps = 14/181 (7%)

Query: 2   NNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQI 61
           +     + K +++GD  VGK+CLL+ +A+D++ E Y+ T+  D    +V   GK   L +
Sbjct: 3   HGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGL 61

Query: 62  WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGN 121
           +DTAGQE +  +    Y      ++ + V +  SF NVK+      +  + NV  LL+G 
Sbjct: 62  YDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGT 121

Query: 122 KCDLTANKV------------VSYETAKAFADEIG-IPFMETSAKSATNVEQAFMAMAAS 168
           + DL  +              +  E  +  A EIG   ++E SA +   ++  F     +
Sbjct: 122 QIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIA 181

Query: 169 I 169
           I
Sbjct: 182 I 182

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  129 bits (324), Expect = 6e-39
 Identities = 71/164 (43%), Positives = 109/164 (66%), Gaps = 5/164 (3%)

Query: 8   LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
           +FK+++IGDS VGK+CL  RF    + +   +TIGVDF+ R V+ DG+ IK+Q+WDTAGQ
Sbjct: 2   IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 61

Query: 68  ERF-RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDL 125
           ERF +++   YYR  H ++ VYD+T+  SF+++  W+ E  ++  + ++ ++LVGNKCDL
Sbjct: 62  ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 121

Query: 126 TANKVVSYETAKAFADEIGIPFMETSAKSAT---NVEQAFMAMA 166
            +   V  + A+ FAD   +P  ETSAK+     +VE  FM +A
Sbjct: 122 RSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLA 165

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  128 bits (321), Expect = 3e-38
 Identities = 54/169 (31%), Positives = 85/169 (50%), Gaps = 2/169 (1%)

Query: 6   DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTA 65
               KL+++G  GVGKS L ++F    ++  Y      D   +    DG   +L I DTA
Sbjct: 4   SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYD-PTIEDSYTKICSVDGIPARLDILDTA 62

Query: 66  GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCD 124
           GQE F  +   Y R  HG ++V+ + D++SFN V +   +I R    ++   +LVGNK D
Sbjct: 63  GQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKAD 122

Query: 125 LTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRM 173
           L + + V    A AF     + + E SAK   NV++AF  +  +++   
Sbjct: 123 LESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQ 171

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  127 bits (320), Expect = 3e-38
 Identities = 56/163 (34%), Positives = 91/163 (55%), Gaps = 3/163 (1%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V    +T  L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDG-ETCLLDILDTAGQE 62

Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTA 127
            +  +   Y R   G + V+ + + +SF ++ Q+  +I R    ++V  +LVGNKCD  A
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD-LA 121

Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIK 170
            + V    A+  A   GIP++ETSAK+   VE AF  +   I+
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  127 bits (320), Expect = 6e-38
 Identities = 49/174 (28%), Positives = 79/174 (45%), Gaps = 14/174 (8%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K +++GD  VGK+CLL+ +  +++   YI T+  D     V  DGK + L +WDTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 64

Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
            +  +    Y      ++ + +    SF NV+       R+   N   +LVG K DL  +
Sbjct: 65  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 124

Query: 129 KVVS------------YETAKAFADEIG-IPFMETSAKSATNVEQAFMAMAASI 169
           K               Y    A A EIG + ++E SA +   ++  F     ++
Sbjct: 125 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 178

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  127 bits (318), Expect = 7e-38
 Identities = 60/164 (36%), Positives = 91/164 (55%), Gaps = 3/164 (1%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++F    ++E Y  TI  D   + VE D +   L+I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDCQQCMLEILDTAGTE 62

Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRY-ASENVNKLLVGNKCDLTA 127
           +F  +   Y +   G  +VY +T Q +FN+++    +I R   +E+V  +LVGNKCDL  
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122

Query: 128 NKVVSYETAKAFADEI-GIPFMETSAKSATNVEQAFMAMAASIK 170
            +VV  E  +  A +     F+E+SAKS  NV + F  +   I 
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQIN 166

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  127 bits (318), Expect = 1e-37
 Identities = 44/181 (24%), Positives = 77/181 (42%), Gaps = 14/181 (7%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K +++GD  VGK+CLL+ +  + +   Y+ T+  D    TV   G+   L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLFDTAGQE 62

Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
            +  +    Y      +V + V    SF NVK+       +       LLVG + DL  +
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD 122

Query: 129 KVV------------SYETAKAFADEI-GIPFMETSAKSATNVEQAFMAMAASIKNRMAS 175
                          + ETA+  A ++  + ++E SA +   ++  F     +       
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEP 182

Query: 176 Q 176
           +
Sbjct: 183 K 183

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  126 bits (317), Expect = 1e-37
 Identities = 66/178 (37%), Positives = 102/178 (57%), Gaps = 4/178 (2%)

Query: 8   LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
           L K++++GDSGVGK+ L+ ++ +  +   Y +TIG DF  + V  D + + +QIWDTAGQ
Sbjct: 2   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 61

Query: 68  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYAS----ENVNKLLVGNKC 123
           ERF+++  ++YRGA   ++V+DVT   +F  +  W +E    AS    EN   +++GNK 
Sbjct: 62  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 121

Query: 124 DLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNN 181
           DL   +V +         +  IP+ ETSAK A NVEQAF  +A +   +       N 
Sbjct: 122 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNE 179

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  125 bits (313), Expect = 4e-37
 Identities = 66/166 (39%), Positives = 99/166 (59%), Gaps = 3/166 (1%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           KL+L+G++ VGKS ++LRF  + + E+   TIG  F  + V  +  T+K +IWDTAGQER
Sbjct: 5   KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64

Query: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLT--- 126
           F ++   YYR A   +VVYDVT  +SF   + W+ E+   AS+++   LVGNK D+    
Sbjct: 65  FASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEG 124

Query: 127 ANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
             + V+ E  +  A+E G+ F ETSAK+  NV   F+ +   I  +
Sbjct: 125 GERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIPLK 170

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  122 bits (305), Expect = 6e-36
 Identities = 54/163 (33%), Positives = 88/163 (53%), Gaps = 2/163 (1%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           ++L+++G  GVGKS L ++F    ++  Y  TI  D   +    D +  +L I DTAGQE
Sbjct: 6   YRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQE 64

Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNK-LLVGNKCDLTA 127
            F  +   Y R   G ++V+ VTD+ SF  + ++  +I R    +    +L+GNK DL  
Sbjct: 65  EFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDH 124

Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIK 170
            + V+ E  +  A ++ + +ME SAK   NV+QAF  +   I+
Sbjct: 125 QRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVIR 167

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  120 bits (301), Expect = 3e-35
 Identities = 48/174 (27%), Positives = 83/174 (47%), Gaps = 14/174 (8%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            KL+++GD   GK+CLL+  + D + E Y+ T+  +  +  +E DGK ++L +WDTAG E
Sbjct: 3   KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLE 61

Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
            +  +    Y     I++ + +   +S  N+ +      ++   NV  +LVGNK DL  +
Sbjct: 62  DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND 121

Query: 129 KVV------------SYETAKAFADEIG-IPFMETSAKSATNVEQAFMAMAASI 169
           +                E  +  A+ IG   +ME SAK+   V + F     + 
Sbjct: 122 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAA 175

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  116 bits (291), Expect = 7e-34
 Identities = 54/169 (31%), Positives = 82/169 (48%), Gaps = 3/169 (1%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +++ + G  GVGKS L+LRF   ++ ESYI T+   ++            LQI DT G  
Sbjct: 3   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDK-SICTLQITDTTGSH 61

Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNK--LLVGNKCDLT 126
           +F  +        H  I+VY +T ++S   +K    +I     +  +   +LVGNKCD +
Sbjct: 62  QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 121

Query: 127 ANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMAS 175
            ++ V    A+A A      FMETSAK   NV++ F  +    K R  S
Sbjct: 122 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKRRTVS 170

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  116 bits (290), Expect = 1e-33
 Identities = 58/166 (34%), Positives = 89/166 (53%), Gaps = 3/166 (1%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++GD GVGKS L ++F    ++  Y  TI  D  ++  E D +   L + DTAGQE
Sbjct: 5   YKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTI-EDSYLKHTEIDNQWAILDVLDTAGQE 63

Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNK-LLVGNKCDLTA 127
            F  +   Y R   G ++VY VTD+ SF +V ++   I R         +LV NK DL  
Sbjct: 64  EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 123

Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSAT-NVEQAFMAMAASIKNR 172
            + V+ +  K  A +  IP++ETSAK    NV++ F  +   I+ +
Sbjct: 124 LRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQ 169

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  115 bits (288), Expect = 3e-33
 Identities = 47/177 (26%), Positives = 84/177 (47%), Gaps = 15/177 (8%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           K++++GDS  GK+ LL  FA D + E+Y+ T+  +    + E D + I+L +WDT+G   
Sbjct: 4   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 62

Query: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN- 128
           +  +    Y  +  +++ +D++  E+ ++V +      +    N   LLVG K DL  + 
Sbjct: 63  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV 122

Query: 129 -----------KVVSYETAKAFADEIGI-PFMETSAKSATN-VEQAFMAMAASIKNR 172
                        VSY+     A +IG   ++E SA  + N V   F     +  N+
Sbjct: 123 STLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVNK 179

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score =  114 bits (286), Expect = 6e-33
 Identities = 36/168 (21%), Positives = 65/168 (38%), Gaps = 9/168 (5%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            ++L++G  G GK+ +L R      + +   TIG + +        K +KL +WD  GQ 
Sbjct: 18  LRILILGLDGAGKTTILYRLQIGEVVTTKP-TIGFNVET----LSYKNLKLNVWDLGGQT 72

Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDR-YASENVNKLLVGNKCDLTA 127
             R     YY     +I V D TD++  +   + L+ + +    ++   L+  NK D   
Sbjct: 73  SIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPG 132

Query: 128 NKVVS---YETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
               S    E       +     + +SA     + +    +   IK  
Sbjct: 133 ALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEE 180

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score =  114 bits (285), Expect = 7e-33
 Identities = 31/166 (18%), Positives = 62/166 (37%), Gaps = 9/166 (5%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            ++L++G    GK+ +L +      + +                  K +K  +WD  GQ+
Sbjct: 13  MRILMLGLDAAGKTTILYKLKLGQSVTTIP-----TVGFNVETVTYKNVKFNVWDVGGQD 67

Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDR-YASENVNKLLVGNKCDLTA 127
           + R +   YY G  G+I V D  D++  +  +Q L+ I       +   L+  NK DL  
Sbjct: 68  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 127

Query: 128 NKV---VSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIK 170
                 +  +       +       + A S   + +    + ++ K
Sbjct: 128 AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYK 173

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  114 bits (285), Expect = 7e-33
 Identities = 70/172 (40%), Positives = 110/172 (63%), Gaps = 7/172 (4%)

Query: 8   LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTI-KLQIWDTAG 66
           + K++++GDSGVGK+ L+ R+ +D Y + Y +TIG DF  + V  DG  +  +Q+WDTAG
Sbjct: 2   ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAG 61

Query: 67  QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNK----LLVGNK 122
           QERF+++  ++YRGA   ++VYDVT+  SF N+K W +E   +A+ N  +    +++GNK
Sbjct: 62  QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNK 121

Query: 123 CDLTANKVVSYE-TAKAFADEIG-IPFMETSAKSATNVEQAFMAMAASIKNR 172
            D   +K +  E +A+  A  +G IP   TSAK+A NV+ AF  +A S   +
Sbjct: 122 IDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQ 173

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  112 bits (281), Expect = 2e-32
 Identities = 56/160 (35%), Positives = 88/160 (55%), Gaps = 1/160 (0%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           K++++G+  VGKS ++ R+    + + Y  TIGVDF  R ++ + + ++L +WDTAGQE 
Sbjct: 4   KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 63

Query: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANK 129
           F  IT +YYRGA   ++V+  TD+ESF  +  W  E       ++   LV NK DL  + 
Sbjct: 64  FDAITKAYYRGAQACVLVFSTTDRESFEAISSW-REKVVAEVGDIPTALVQNKIDLLDDS 122

Query: 130 VVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
            +  E A+  A  + + F  TS K   NV + F  +A   
Sbjct: 123 CIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKH 162

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (276), Expect = 1e-31
 Identities = 49/166 (29%), Positives = 79/166 (47%), Gaps = 4/166 (2%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            KL + G +GVGKS L++RF    ++  Y  T+           D + + ++I DT   +
Sbjct: 3   VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTL-ESTYRHQATIDDEVVSMEILDT-AGQ 60

Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLN-EIDRYASENVNKLLVGNKCDLTA 127
                   + R   G ++VYD+TD+ SF  V    N   +    +NV  +LVGNK DL  
Sbjct: 61  EDTIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDH 120

Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSAT-NVEQAFMAMAASIKNR 172
           ++ VS E  +  A E+   F E SA +   N+ + F  +   ++ R
Sbjct: 121 SRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRR 166

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score =  108 bits (270), Expect = 8e-31
 Identities = 29/164 (17%), Positives = 57/164 (34%), Gaps = 9/164 (5%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           ++L++G    GK+ +L +            T            + K I   +WD  GQ++
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEI-----VTTIPTIGFNVETVEYKNISFTVWDVGGQDK 56

Query: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANK 129
            R +   Y++   G+I V D  D+E  N  ++ L  +          LLV        N 
Sbjct: 57  IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 116

Query: 130 V----VSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
           +    ++ +               T A S   + +    ++  +
Sbjct: 117 MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (262), Expect = 2e-29
 Identities = 52/161 (32%), Positives = 85/161 (52%), Gaps = 3/161 (1%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           FKL+L+GD G GK+  + R     + + Y++T+GV+        +   IK  +WDTAGQE
Sbjct: 4   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63

Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
           +F  +   YY  A   I+++DVT + ++ NV  W  +      EN+  +L GNK D+   
Sbjct: 64  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD-LVRVCENIPIVLCGNKVDIKDR 122

Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
           KV     +  F  +  + + + SAKS  N E+ F+ +A  +
Sbjct: 123 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 161

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (258), Expect = 5e-29
 Identities = 51/163 (31%), Positives = 83/163 (50%), Gaps = 2/163 (1%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K+ ++G   VGKS L ++F +  +++SY  TI  +   + +  +G+   LQ+ DTAGQ+
Sbjct: 5   RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTI-ENTFTKLITVNGQEYHLQLVDTAGQD 63

Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWL-NEIDRYASENVNKLLVGNKCDLTA 127
            +     +Y    +G I+VY VT  +SF  +K      +D      +  +LVGNK DL  
Sbjct: 64  EYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM 123

Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIK 170
            +V+SYE  KA A+     F+E+SAK        F  +    +
Sbjct: 124 ERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAE 166

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score =  103 bits (258), Expect = 6e-29
 Identities = 35/168 (20%), Positives = 63/168 (37%), Gaps = 9/168 (5%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            +LL++G    GK+ +L +F  +      + TI           + +  KL IWD  GQ+
Sbjct: 3   LRLLMLGLDNAGKTTILKKFNGE-----DVDTISPTLGFNIKTLEHRGFKLNIWDVGGQK 57

Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
             R+   +Y+    G+I V D  D++   + ++ L  +           L+  NK DL  
Sbjct: 58  SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPG 117

Query: 128 NKVVSYETAKAFADEI---GIPFMETSAKSATNVEQAFMAMAASIKNR 172
               +        D I          SA +  ++      +   I +R
Sbjct: 118 ALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 165

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score =  103 bits (256), Expect = 2e-28
 Identities = 32/166 (19%), Positives = 65/166 (39%), Gaps = 9/166 (5%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K++++G    GK+ +L +F+ +  + +  +      +I          +  +WD  GQE
Sbjct: 16  HKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVI-----NNTRFLMWDIGGQE 70

Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNE-IDRYASENVNKLLVGNKCDLTA 127
             R+  ++YY     +IVV D TD+E  +  ++ L + +          L+  NK D+  
Sbjct: 71  SLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 130

Query: 128 NKV---VSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIK 170
                 +S         +         A +   + Q    M + +K
Sbjct: 131 CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLK 176

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (253), Expect = 3e-28
 Identities = 49/169 (28%), Positives = 79/169 (46%), Gaps = 3/169 (1%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +K+LL+G  GVGKS L   F          +        R++  DG+   L ++D   Q+
Sbjct: 2   YKVLLLGAPGVGKSALARIFGGVED--GPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQD 59

Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
             R +           ++VY VTD+ SF    +   ++ R   +++V  +LVGNK DL  
Sbjct: 60  GGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR 119

Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQ 176
           ++ VS +  +A A      F+ETSA    NV+  F  +   I+ R  S+
Sbjct: 120 SREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLRRDSK 168

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score =  100 bits (250), Expect = 1e-27
 Identities = 38/173 (21%), Positives = 64/173 (36%), Gaps = 9/173 (5%)

Query: 1   MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ 60
           + +  D   ++LL+G    GK+ LL + A +        T G + K        +  KL 
Sbjct: 9   LKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITP-TQGFNIK----SVQSQGFKLN 63

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLV 119
           +WD  GQ + R    SY+     +I V D  D++ F    Q L E+        V  L+ 
Sbjct: 64  VWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIF 123

Query: 120 GNKCDLT---ANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
            NK DL        ++         +        SA +   V+     +  ++
Sbjct: 124 ANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.1 bits (245), Expect = 6e-27
 Identities = 47/170 (27%), Positives = 82/170 (48%), Gaps = 3/170 (1%)

Query: 6   DYLFKLLLIGDSGVGKSCLLLRFADDSY-LESYISTIGVDFKIRTVEQDGKTIKLQIWDT 64
           +  ++++LIG+ GVGKS L   FA     ++S    +G D   RT+  DG++  + + D 
Sbjct: 1   NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDM 60

Query: 65  A-GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNK 122
              +     +     +     ++VY +TD+ SF    +   ++ R    E++  +LVGNK
Sbjct: 61  WENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNK 120

Query: 123 CDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
            DL   + VS    +A A      F+ETSA    NV++ F  +   ++ R
Sbjct: 121 SDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLR 170

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 96.9 bits (240), Expect = 7e-26
 Identities = 33/198 (16%), Positives = 61/198 (30%), Gaps = 43/198 (21%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            KLLL+G    GKS  + +        S + T G+         D +++  ++ D  GQ 
Sbjct: 3   LKLLLLGTGESGKSTFIKQMRIIH--GSGVPTTGIIEY----PFDLQSVIFRMVDVGGQR 56

Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQES-----------FNNVKQWLNEIDRYASENVNKL 117
             R      +     I+ +  +++ +              +   +   I     +N + +
Sbjct: 57  SERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVI 116

Query: 118 LVGNKCDLTANKVVSYETAKAFADEIGIPFM--------------------------ETS 151
           L  NK DL   K++       F +  G                               T 
Sbjct: 117 LFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTC 176

Query: 152 AKSATNVEQAFMAMAASI 169
           A    N+   F A+  +I
Sbjct: 177 ATDTENIRFVFAAVKDTI 194

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 94.6 bits (234), Expect = 5e-25
 Identities = 32/177 (18%), Positives = 57/177 (32%), Gaps = 20/177 (11%)

Query: 8   LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
           L K+LL+G    GKS  L +            T G+       + + K +  ++ D  GQ
Sbjct: 2   LVKILLLGAGESGKSTFLKQMRII---HGQDPTKGIHEY----DFEIKNVPFKMVDVGGQ 54

Query: 68  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASE-----------NVNK 116
              R      +     I+ +   ++ +      +  N +    +            NV+ 
Sbjct: 55  RSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSI 114

Query: 117 LLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRM 173
           +L  NK DL   KV        F +  G P      +    + + F       + R 
Sbjct: 115 ILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQK--FLVECFRGKRRDQQQRP 169

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 92.8 bits (229), Expect = 1e-24
 Identities = 37/176 (21%), Positives = 60/176 (34%), Gaps = 13/176 (7%)

Query: 1   MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ 60
           M  E     ++L++G  G GK+ +L R            T              K +K Q
Sbjct: 2   MTREM----RILILGLDGAGKTTILYRLQVGEV-----VTTIPTIGFNVETVTYKNLKFQ 52

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKL-LV 119
           +WD  G    R     YY     +I V D  D++     K  L  +          L + 
Sbjct: 53  VWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVF 112

Query: 120 GNKCDLTANKVVS---YETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
            NK D+      S            +      +TSA   T +++A   +  ++K+R
Sbjct: 113 ANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 168

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 92.4 bits (228), Expect = 2e-24
 Identities = 29/168 (17%), Positives = 61/168 (36%), Gaps = 16/168 (9%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           KLL +G    GK+ LL    +D      ++T+   +   + E     IK   +D  G  +
Sbjct: 2   KLLFLGLDNAGKTTLLHMLKND-----RLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQ 56

Query: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCD----- 124
            R +   Y+   +GI+ + D  D E F+  +  L+ +   A       ++          
Sbjct: 57  ARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNA 116

Query: 125 ------LTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMA 166
                  +A  +++   ++    +  +     S        +AF  ++
Sbjct: 117 VSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLS 164

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.4 bits (228), Expect = 2e-24
 Identities = 36/174 (20%), Positives = 71/174 (40%), Gaps = 13/174 (7%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            +L ++GD+  GKS L+ RF   SY          +   + +  DG+T  + I + AG  
Sbjct: 6   LRLGVLGDARSGKSSLIHRFLTGSYQVLE--KTESEQYKKEMLVDGQTHLVLIREEAGAP 63

Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRY-----ASENVNKLLVGNKC 123
             +     +   A  +I V+ + D+ SF  V +   ++            +  +   ++ 
Sbjct: 64  DAK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRI 118

Query: 124 DLTANKVVSYETAKAFADEI-GIPFMETSAKSATNVEQAFMAMAASIKNRMASQ 176
             ++ +VV    A+A   ++    + ET A    NV++ F  +A  +      Q
Sbjct: 119 SASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVTLRKQQ 172

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 93.3 bits (231), Expect = 3e-24
 Identities = 29/195 (14%), Positives = 58/195 (29%), Gaps = 20/195 (10%)

Query: 5   YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDT 64
           Y    +LLL+G    GKS ++ +          + T G+       +     +   ++D 
Sbjct: 3   YRATHRLLLLGAGESGKSTIVKQMRIL----HVVLTSGIFET----KFQVDKVNFHMFDV 54

Query: 65  AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASE-----------N 113
            GQ   R      +     II V   +            N +    +             
Sbjct: 55  GGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRT 114

Query: 114 VNKLLVGNKCDLTANKVVSYETA-KAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
           ++ +L  NK DL A KV++ ++  + +  E         A      +         I++ 
Sbjct: 115 ISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDE 174

Query: 173 MASQPASNNARPPTV 187
                 ++       
Sbjct: 175 FLRISTASGDGRHYC 189

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 88.6 bits (218), Expect = 4e-23
 Identities = 40/166 (24%), Positives = 69/166 (41%), Gaps = 8/166 (4%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            +L L+G    GK+  +   A   + E  I T+G + +  T       + +++WD  GQ 
Sbjct: 3   MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGN----VTIKLWDIGGQP 58

Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
           RFR++   Y RG   I+ + D  DQE     K  L+ +      + +  L++GNK DL  
Sbjct: 59  RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPG 118

Query: 128 ---NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIK 170
               K +  +   +   +  I     S K   N++     +    K
Sbjct: 119 ALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSK 164

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 81.9 bits (201), Expect = 3e-20
 Identities = 34/198 (17%), Positives = 58/198 (29%), Gaps = 46/198 (23%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            KLLL+G    GKS ++ +        + I      FK             +++D  GQ 
Sbjct: 3   VKLLLLGAGESGKSTIVKQMKIIHEAGTGIVETHFTFKDLHF---------KMFDVGGQR 53

Query: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-----------WLNEIDRYASENVNKL 117
             R      + G   II    ++D +      +           + +  +     + + +
Sbjct: 54  SERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSII 113

Query: 118 LVGNKCDLTANKVVSYETAKAFADEIG--------------------------IPFMETS 151
           L  NK DL   K+        + +  G                          I    T 
Sbjct: 114 LFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTC 173

Query: 152 AKSATNVEQAFMAMAASI 169
           A    NV+  F A+   I
Sbjct: 174 ATDTKNVQFVFDAVTDVI 191

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 79.0 bits (193), Expect = 4e-19
 Identities = 33/181 (18%), Positives = 58/181 (32%), Gaps = 21/181 (11%)

Query: 5   YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDT 64
           Y    KL+ +G    GK+ LL    DD   +   +      ++         +    +D 
Sbjct: 10  YKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTI-----AGMTFTTFDL 64

Query: 65  AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKC 123
            G  + R +  +Y    +GI+ + D  D E     K+ L+ +    +  NV  L++GNK 
Sbjct: 65  GGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKI 124

Query: 124 DLTANKVVS---------------YETAKAFADEIGIPFMETSAKSATNVEQAFMAMAAS 168
           D                          +    +   +     S        + F  MA  
Sbjct: 125 DRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQY 184

Query: 169 I 169
           I
Sbjct: 185 I 185

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 75.4 bits (184), Expect = 1e-17
 Identities = 25/148 (16%), Positives = 51/148 (34%), Gaps = 6/148 (4%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
            +L +G    GK+ L +R     Y ++  ++I     I  V  +       I     +  
Sbjct: 2   AVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSSAIYKVNNNRGNSLTLIDLPGHESL 60

Query: 70  FRTITSSYYRGAHGIIVVYDVTDQESF-NNVKQWLNEIDRYASENVNK---LLVGNKCDL 125
              +   +   A  ++ V D    +    +V ++L ++   +    N    L+  NK D+
Sbjct: 61  RFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDI 120

Query: 126 TANKVVSYETAKAFADEIGIPFMETSAK 153
              K       +    E+    +  SA 
Sbjct: 121 AMAKSAK-LIQQQLEKELNTLRVTRSAA 147

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 63.5 bits (153), Expect = 4e-13
 Identities = 30/174 (17%), Positives = 53/174 (30%), Gaps = 25/174 (14%)

Query: 7   YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG 66
           Y   +++ G    GK+ LL     DS       T+     +   + DG  +   + D  G
Sbjct: 2   YQPSIIIAGPQNSGKTSLLTLLTTDSVRP----TVVSQEPLSAADYDGSGV--TLVDFPG 55

Query: 67  QERFRTITSSYY-----RGAHGIIVVYDVTDQESFNNVKQWLNEI----DRYASENVNKL 117
             + R   S Y           I +V    D +      ++L +I    +      ++ L
Sbjct: 56  HVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDIL 115

Query: 118 LVGNKCDLTANKVVSYETAKAFADEI---------GIPFMETSAKSATNVEQAF 162
           +  NK +L        +   A   EI          +  +E         E   
Sbjct: 116 IACNKSEL-FTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTL 168

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

 Score = 47.4 bits (111), Expect = 1e-07
 Identities = 26/159 (16%), Positives = 54/159 (33%), Gaps = 15/159 (9%)

Query: 9   FKLLLIGDSGVGKSCLLLRFA-DDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDT--- 64
            K+++ G    GKS LL   A  ++ + + I+    D     +  DG  + +        
Sbjct: 2   MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRE 61

Query: 65  ---AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGN 121
                +             A  ++ + D T  ++ +  + W  E        +   +V N
Sbjct: 62  ASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIW-PEFIARLPAKLPITVVRN 120

Query: 122 KCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQ 160
           K D+T             ++  G   +  SA++   V+ 
Sbjct: 121 KADITGET-------LGMSEVNGHALIRLSARTGEGVDV 152

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.4 bits (104), Expect = 4e-06
 Identities = 17/120 (14%), Positives = 29/120 (24%), Gaps = 7/120 (5%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIR--TVEQDGKTIKLQIWDTAG 66
             + + G++G GKS  +         E   +  GV          +      +  WD  G
Sbjct: 57  LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPG 116

Query: 67  QERFRTITSSYYR--GAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCD 124
                    +Y      +       ++      N       I            V  K D
Sbjct: 117 IGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMM---KKEFYFVRTKVD 173

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} Length = 205

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 39.2 bits (90), Expect = 1e-04
 Identities = 22/137 (16%), Positives = 43/137 (31%), Gaps = 9/137 (6%)

Query: 40  TIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNV 99
           T        + ++     ++   D  G E       S      G I+V    +       
Sbjct: 69  TEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQT 128

Query: 100 KQWLNEIDRYASENVNKLLV-GNKCDLTANK--VVSYETAKAFADEIG---IPFMETSAK 153
           ++    +       V  L++  NK D+ + +  +  Y   K F        +P +  SA 
Sbjct: 129 REHFVALGII---GVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVPIIPVSAL 185

Query: 154 SATNVEQAFMAMAASIK 170
              N++     +   IK
Sbjct: 186 HKINIDSLIEGIEEYIK 202

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

 Score = 38.5 bits (88), Expect = 2e-04
 Identities = 27/168 (16%), Positives = 47/168 (27%), Gaps = 13/168 (7%)

Query: 13  LIGDSGVGKSCLLLRFAD-DSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ---- 67
           L+G    GKS LL         +  Y  T            + +     + D  G     
Sbjct: 6   LVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERF--TLADIPGIIEGA 63

Query: 68  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQW----LNEIDRYASENVNKLLVGNKC 123
              + +   + R      V+  V D                     A      L+  NK 
Sbjct: 64  SEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKV 123

Query: 124 DLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKN 171
           DL   + V  +         G+  +  SA +   +     A+ A +++
Sbjct: 124 DLLEEEAV--KALADALAREGLAVLPVSALTGAGLPALKEALHALVRS 169

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} Length = 188

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

 Score = 37.1 bits (84), Expect = 7e-04
 Identities = 23/165 (13%), Positives = 43/165 (26%), Gaps = 10/165 (6%)

Query: 6   DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTA 65
           D   ++   G S  GKS  L    +   L     T G    I   E       + +    
Sbjct: 14  DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYG 73

Query: 66  GQ-------ERFRTITSSYYRGAHGIIVVYDVTDQESFNN--VKQWLNEIDRYASENVNK 116
                     +++     Y      +  +  + D         +Q +          +  
Sbjct: 74  YAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVL 133

Query: 117 LLVGNKCDLTANKVVSYETAKAFADEIG-IPFMETSAKSATNVEQ 160
           L   +K    A K       +A     G +     S+     V++
Sbjct: 134 LTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDK 178

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 37.0 bits (84), Expect = 7e-04
 Identities = 26/180 (14%), Positives = 44/180 (24%), Gaps = 20/180 (11%)

Query: 13  LIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIR---------TVEQDGKTIKLQIWD 63
             G S VGKS L+ R             +                           +   
Sbjct: 5   FAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPKEVQ 64

Query: 64  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRY-------ASENVNK 116
              ++          +     ++V D           +   EI             ++  
Sbjct: 65  ERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPT 124

Query: 117 LLVGNKCDLTANKVVSYETAKAF----ADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
           ++  NK D   N                 EI   F+  SAK   N+E+    +   I+ R
Sbjct: 125 IVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRER 184

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 257

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 36.7 bits (84), Expect = 9e-04
 Identities = 18/139 (12%), Positives = 38/139 (27%), Gaps = 16/139 (11%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG-- 66
             +L++G  GVGKS  +     +  +           +   V +      L I DT G  
Sbjct: 33  LTILVMGKGGVGKSSTVNSIIGERVVSIS-PFQSEGPRPVMVSRSRAGFTLNIIDTPGLI 91

Query: 67  ---------QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNK- 116
                        ++           ++ V  +      N  K     I     + +   
Sbjct: 92  EGGYINDMALNIIKSFLLDK--TIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNK 149

Query: 117 -LLVGNKCDLTANKVVSYE 134
            ++       +    + Y+
Sbjct: 150 AIVALTHAQFSPPDGLPYD 168

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 35.0 bits (79), Expect = 0.003
 Identities = 28/179 (15%), Positives = 53/179 (29%), Gaps = 20/179 (11%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDS-----------YLESYISTIGVDFKIRTVEQDGKTI 57
            K+ ++G   VGKS L     +                          K   V+  G   
Sbjct: 9   IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRR 68

Query: 58  KLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKL 117
           K ++     ++            A  +++V       +    +Q               +
Sbjct: 69  KSRVEPRTVEKYSNYRVVDSIEKADVVVIVL----DATQGITRQDQRMAGLMERRGRASV 124

Query: 118 LVGNKCDLTANKVVSYETAKAFADEI-----GIPFMETSAKSATNVEQAFMAMAASIKN 171
           +V NK DL  ++   Y+       E        P + TSA    N+++   AM  +  +
Sbjct: 125 VVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYAS 183

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 34.6 bits (78), Expect = 0.003
 Identities = 27/160 (16%), Positives = 51/160 (31%), Gaps = 19/160 (11%)

Query: 10  KLLLIGDSGVGKSCLLLRFAD-DSYLESYISTIGVDFKIRTVEQDGKT--------IKLQ 60
           +++++G   VGKS LL R  + D  + + I     D     +   G          ++ +
Sbjct: 2   RMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSE 61

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120
             D   +      T      A  ++ V D +      + K      ++          V 
Sbjct: 62  TNDLVERLGIER-TLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYLV------VI 114

Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQ 160
           NK D+           K   D      ++ SA     +E+
Sbjct: 115 NKVDVVEKINEEEIKNKLGTDR---HMVKISALKGEGLEK 151

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	203
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	100.0
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	100.0
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	100.0
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	100.0
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	100.0
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	100.0
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	100.0
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	100.0
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	100.0
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	100.0
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.98
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.97
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.97
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.97
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.97
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.97
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.96
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.94
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.94
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.93
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.92
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.92
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.91
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.91
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.91
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.91
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.91
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.9
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.9
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.9
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.9
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.89
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.86
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.86
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.86
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.86
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.85
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.85
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.82
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.81
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.81
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.78
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.77
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.76
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.76
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.75
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.71
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.7
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.65
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.65
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.58
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.55
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.49
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	99.46
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	99.43
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	99.4
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	99.38
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	99.3
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	99.16
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	99.11
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	98.98
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.71
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.56
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	98.51
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.47
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.45
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.4
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.37
d1okkd2	207	GTPase domain of the signal recognition particle r	98.36
d2qy9a2	211	GTPase domain of the signal recognition particle r	98.34
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.31
d1j8yf2	211	GTPase domain of the signal sequence recognition p	98.24
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.23
d1ls1a2	207	GTPase domain of the signal sequence recognition p	98.07
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.82
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.82
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.75
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.68
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.67
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.66
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.64
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.6
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.6
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.59
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.57
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.54
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.52
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.49
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.48
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.47
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.46
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.4
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.35
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.35
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	97.32
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.28
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.28
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.26
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.23
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.22
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.22
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.19
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.19
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.18
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.16
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.16
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	97.16
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	97.14
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	97.13
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.11
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.11
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.1
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.09
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.06
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	97.05
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.04
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	97.03
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	97.03
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	97.02
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	97.02
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	97.02
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.01
d2awna2	232	Maltose transport protein MalK, N-terminal domain	96.99
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	96.98
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	96.98
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	96.97
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	96.97
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	96.93
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	96.92
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	96.91
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.91
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	96.9
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	96.88
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	96.86
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	96.84
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	96.83
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	96.82
d1g2912	240	Maltose transport protein MalK, N-terminal domain	96.8
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.79
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	96.74
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.71
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	96.69
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.69
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	96.68
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.65
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.62
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.6
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	96.6
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	96.56
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.54
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.47
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.45
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.42
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.38
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	96.38
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.35
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.28
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.28
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.28
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	96.28
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	96.25
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.21
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.16
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.07
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.96
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	95.96
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	95.93
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.85
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	95.79
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	95.73
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	95.72
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	95.67
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	95.66
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	95.64
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	95.6
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	95.56
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	95.54
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.53
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	95.48
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	95.46
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	95.46
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	95.44
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	95.42
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	95.34
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	95.31
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	95.31
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	95.28
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	95.19
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	95.14
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	94.95
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	94.91
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	94.91
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	94.85
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	94.85
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	94.84
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	94.81
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	94.76
d1tuea_	205	Replication protein E1 helicase domain {Human papi	94.68
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	94.64
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	94.64
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	94.59
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	94.57
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	94.39
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	94.36
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	94.16
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	94.07
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	94.05
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	93.98
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	93.91
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	93.84
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	93.4
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	93.22
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	93.16
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	92.82
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	92.22
d1xpua3	289	Transcription termination factor Rho, ATPase domai	92.18
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	91.26
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	91.03
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	90.62
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	90.39
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	90.32
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	89.84
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	88.73
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	88.45
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	88.31
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	87.08
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	87.04
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	86.73
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	85.59
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	85.43
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	84.8
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	84.67
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	84.62
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	84.43
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	84.24
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	83.1
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	82.94
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	82.57
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	81.83
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	81.7
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	81.44
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	81.07
d1zpda1	175	Pyruvate decarboxylase {Zymomonas mobilis [TaxId:	81.04
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	80.73
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	80.47
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	80.31

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=4.1e-38  Score=221.50  Aligned_cols=168  Identities=51%  Similarity=0.954  Sum_probs=156.4

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcE
Q 028792            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG   83 (203)
Q Consensus         4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   83 (203)
                      +.++.+||+++|++|||||||+++|..+.+.+.+.++.+.+.....+...+..+.+.+||+||++++..++..++..+|+
T Consensus         1 ~~~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~   80 (169)
T d3raba_           1 NFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMG   80 (169)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCE
T ss_pred             CCCeEEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCE
Confidence            46789999999999999999999999999988888888888888889899999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHH
Q 028792           84 IIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFM  163 (203)
Q Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  163 (203)
                      +|+|||+++++++..+..|+..+........|+++++||.|+.....+..+++.++++.+++++++|||++|.|++++|+
T Consensus        81 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~  160 (169)
T d3raba_          81 FILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFE  160 (169)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHCCSCCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred             EEEEEECccchhhhhhhhhhhhhhcccCCcceEEEEEeecccccccccchhhhHHHHHHcCCEEEEecCCCCcCHHHHHH
Confidence            99999999999999999988888777667799999999999988778888999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 028792          164 AMAASIKN  171 (203)
Q Consensus       164 ~l~~~~~~  171 (203)
                      +|++.+.+
T Consensus       161 ~l~~~i~e  168 (169)
T d3raba_         161 RLVDVICE  168 (169)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhh
Confidence            99998865

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.2e-38  Score=221.01  Aligned_cols=170  Identities=49%  Similarity=0.869  Sum_probs=158.1

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcE
Q 028792            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG   83 (203)
Q Consensus         4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   83 (203)
                      ++++.+||+++|.+|||||||+++|..+.+...+.++.+.++....+..++..+.+.+||+||++++...+..++.++|+
T Consensus         1 ~~~~~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~   80 (171)
T d2ew1a1           1 DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANA   80 (171)
T ss_dssp             CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSE
T ss_pred             CCCEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccce
Confidence            46889999999999999999999999999988888899889999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHH
Q 028792           84 IIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFM  163 (203)
Q Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  163 (203)
                      +++|+|++++.++..+..|+..+........|+++|+||+|+.+...+..+++.++++.+++++++|||++|+||+++|.
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ilvgnK~D~~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gV~e~f~  160 (171)
T d2ew1a1          81 LILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFL  160 (171)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHH
T ss_pred             EEEeeecccchhhhhhhhhhhhhcccccccccEEEEEeecccccccchhhhHHHHHHHhCCCEEEEEccCCCCCHHHHHH
Confidence            99999999999999999999988777777799999999999987778888999999999999999999999999999999


Q ss_pred             HHHHHHHHHh
Q 028792          164 AMAASIKNRM  173 (203)
Q Consensus       164 ~l~~~~~~~~  173 (203)
                      +|++.+.+..
T Consensus       161 ~l~~~l~~~~  170 (171)
T d2ew1a1         161 DLACRLISEA  170 (171)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhc
Confidence            9998877543

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.1e-37  Score=220.97  Aligned_cols=174  Identities=75%  Similarity=1.187  Sum_probs=161.3

Q ss_pred             CCCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCc
Q 028792            3 NEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAH   82 (203)
Q Consensus         3 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d   82 (203)
                      +++++.+||+|+|++|||||||+++|..+.+...+.++.+..+....+.+++..+.+.+||+||++++..++..++..+|
T Consensus         1 ~~~~~~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~   80 (194)
T d2bcgy1           1 SEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSH   80 (194)
T ss_dssp             CCCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCS
T ss_pred             CCCCEEEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCC
Confidence            46789999999999999999999999999999888899888888888889999999999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHH
Q 028792           83 GIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAF  162 (203)
Q Consensus        83 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~  162 (203)
                      ++|+|||+++++++..+..|+..+........|+++++||.|+.+...+..++...++...++.++++||++|.|++++|
T Consensus        81 ~~i~v~d~t~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~gi~e~f  160 (194)
T d2bcgy1          81 GIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAF  160 (194)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHH
T ss_pred             EEEEEEeCcchhhhhhHhhhhhhhhhcccCCceEEEEEeccccccccchhHHHHhhhhhccCcceEEEecCcCccHHHHH
Confidence            99999999999999999999888877777789999999999999888899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhccC
Q 028792          163 MAMAASIKNRMASQ  176 (203)
Q Consensus       163 ~~l~~~~~~~~~~~  176 (203)
                      .+|++.+.+.....
T Consensus       161 ~~l~~~i~~~~~~~  174 (194)
T d2bcgy1         161 LTMARQIKESMSQQ  174 (194)
T ss_dssp             HHHHHHHHHHCCHH
T ss_pred             HHHHHHHHHHhhhc
Confidence            99999888755443

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-37  Score=218.45  Aligned_cols=165  Identities=37%  Similarity=0.749  Sum_probs=148.5

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEE
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV   86 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (203)
                      |.+||+|+|.+|||||||+++|..+.+...+.++.+..........++..+.+.+||++|+.++..++..++.++|++++
T Consensus         2 y~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   81 (167)
T d1z08a1           2 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAIL   81 (167)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEE
T ss_pred             ceEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEE
Confidence            78999999999999999999999999999999999989999999999999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHH
Q 028792           87 VYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMA  166 (203)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  166 (203)
                      |||++++++|+.+..|+..+........|+++++||+|+...+.++.+++.++++.+++++++|||++|.|++++|.+|+
T Consensus        82 v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~e~~~~a~~~~~~~~e~Sak~~~~v~e~F~~l~  161 (167)
T d1z08a1          82 VYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLC  161 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHH
T ss_pred             EEeCCchhHHHhhhhhhhhcccccccccceeeeccccccccccccchHHHHHHHHHcCCeEEEEecCCCcCHHHHHHHHH
Confidence            99999999999999999888776666789999999999988888999999999999999999999999999999999999


Q ss_pred             HHHHH
Q 028792          167 ASIKN  171 (203)
Q Consensus       167 ~~~~~  171 (203)
                      +.+.+
T Consensus       162 ~~i~~  166 (167)
T d1z08a1         162 KRMIE  166 (167)
T ss_dssp             HHHHC
T ss_pred             HHHhh
Confidence            98763

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.2e-37  Score=215.71  Aligned_cols=165  Identities=50%  Similarity=0.916  Sum_probs=154.9

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEE
Q 028792            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI   84 (203)
Q Consensus         5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (203)
                      .++.+||+++|.+|||||||+++|.++.+...+.++.+.++.......++..+.+.+||++|++.+...+..++.++|++
T Consensus         1 ~~y~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~   80 (166)
T d1z0fa1           1 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA   80 (166)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEE
T ss_pred             CcEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEE
Confidence            47899999999999999999999999999988888888888889999999999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHH
Q 028792           85 IVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMA  164 (203)
Q Consensus        85 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  164 (203)
                      ++|+|+++++++..+..|+..+........|+++++||.|+........+++..+++.+++++++|||++|+|++++|.+
T Consensus        81 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Saktg~~v~e~f~~  160 (166)
T d1z0fa1          81 LMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLE  160 (166)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEeccCchHHHHHHHHHHHHHHhhccccceEEEEcccccchhhcccHHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999988877778999999999999887888888999999999999999999999999999999


Q ss_pred             HHHHH
Q 028792          165 MAASI  169 (203)
Q Consensus       165 l~~~~  169 (203)
                      |++.+
T Consensus       161 i~~~i  165 (166)
T d1z0fa1         161 AAKKI  165 (166)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            98875

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.9e-37  Score=216.50  Aligned_cols=171  Identities=48%  Similarity=0.843  Sum_probs=159.4

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEE
Q 028792            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI   84 (203)
Q Consensus         5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (203)
                      +++.+||+++|.+|||||||+++|..+.+.+.+.++.+.......+..++....+.+||+||++++..++..++..+|++
T Consensus         2 ~~~~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   81 (174)
T d2bmea1           2 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGA   81 (174)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEE
T ss_pred             ccEEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEE
Confidence            57889999999999999999999999999988888888888888888899999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHH
Q 028792           85 IVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMA  164 (203)
Q Consensus        85 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  164 (203)
                      ++|+|.++++++..+..|+..+......+.|+++++||+|+........+....+++.++++++++||++|.|++++|.+
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gi~e~f~~  161 (174)
T d2bmea1          82 LLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQ  161 (174)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEEecccchhHHHHhhhhcccccccCCceEEEEEEecccccchhchhhhHHHHHHHhCCCEEEEeeCCCCcCHHHHHHH
Confidence            99999999999999999999988877778999999999999877788888899999999999999999999999999999


Q ss_pred             HHHHHHHHhcc
Q 028792          165 MAASIKNRMAS  175 (203)
Q Consensus       165 l~~~~~~~~~~  175 (203)
                      |.+.+.++.+.
T Consensus       162 l~~~i~~~~~~  172 (174)
T d2bmea1         162 CARKILNKIES  172 (174)
T ss_dssp             HHHHHHHHHHS
T ss_pred             HHHHHHHHHhc
Confidence            99999877654

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.3e-37  Score=215.85  Aligned_cols=170  Identities=33%  Similarity=0.561  Sum_probs=152.9

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcE
Q 028792            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG   83 (203)
Q Consensus         4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   83 (203)
                      +..+.+||+++|.+|||||||+++|..+.+...+.++.. +.....+..++..+.+.+||++|..++...+..++.++|+
T Consensus         2 ~~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~   80 (173)
T d2fn4a1           2 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE-DSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHG   80 (173)
T ss_dssp             CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCC-EEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSE
T ss_pred             CCCCeEEEEEECCCCcCHHHHHHHHHhCCCCcccccccc-cceeeEeccCCeeeeeeccccccccccccccchhhcccee
Confidence            455789999999999999999999999998888777654 4555778889999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHH
Q 028792           84 IIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAF  162 (203)
Q Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~  162 (203)
                      +++|||+++++++..+..|+..+.... ..+.|+++|+||+|+...+....+++..+++.+++++++|||++|.|++++|
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f  160 (173)
T d2fn4a1          81 FLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAF  160 (173)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHH
T ss_pred             eeeecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechhhccccchhhhhHHHHhcCCEEEEEeCCCCcCHHHHH
Confidence            999999999999999999999876543 4578999999999998777888899999999999999999999999999999


Q ss_pred             HHHHHHHHHHhc
Q 028792          163 MAMAASIKNRMA  174 (203)
Q Consensus       163 ~~l~~~~~~~~~  174 (203)
                      .+|++.+.++++
T Consensus       161 ~~l~~~i~k~~~  172 (173)
T d2fn4a1         161 EQLVRAVRKYQE  172 (173)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhc
Confidence            999999987654

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.4e-37  Score=214.86  Aligned_cols=165  Identities=29%  Similarity=0.387  Sum_probs=134.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEE
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVV   87 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (203)
                      .+||+++|++|||||||+++|.+..+... .++. .......+..++..+.+.+||++|++++..++..++..+|++|+|
T Consensus         1 ifKi~lvG~~~vGKTsLi~~~~~~~~~~~-~~~~-~~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv   78 (168)
T d2gjsa1           1 VYKVLLLGAPGVGKSALARIFGGVEDGPE-AEAA-GHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV   78 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHTC-----------CEEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEE
T ss_pred             CeEEEEECCCCcCHHHHHHHHhCCccCCc-CCee-eeeecceeeccccccceeeeecccccccceecccchhhhhhhcee
Confidence            48999999999999999999998765443 2333 334456677899999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHH
Q 028792           88 YDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMA  166 (203)
Q Consensus        88 ~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  166 (203)
                      ||++++++++.+..|+..+..... ...|+++|+||+|+.+.+.+..+++.++++.+++++++|||++|.|++++|.+|+
T Consensus        79 ~d~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~~f~~l~  158 (168)
T d2gjsa1          79 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV  158 (168)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHH
T ss_pred             ccccccccccccccccchhhcccccccceEEEeecccchhhhcchhHHHHHHHHHhcCCEEEEEeCCCCcCHHHHHHHHH
Confidence            999999999999999999876654 5689999999999988778889999999999999999999999999999999999


Q ss_pred             HHHHHHhc
Q 028792          167 ASIKNRMA  174 (203)
Q Consensus       167 ~~~~~~~~  174 (203)
                      +.+..++.
T Consensus       159 ~~i~~~~~  166 (168)
T d2gjsa1         159 RQIRLRRD  166 (168)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhh
Confidence            98887654

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.4e-37  Score=217.58  Aligned_cols=171  Identities=60%  Similarity=1.057  Sum_probs=130.3

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcE
Q 028792            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG   83 (203)
Q Consensus         4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   83 (203)
                      -+++.+||+++|.++||||||+++|.++.+...+.++.+.++....+..++..+.+.+||+||++.+...+..++..+|+
T Consensus         2 ~~~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~   81 (173)
T d2fu5c1           2 TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG   81 (173)
T ss_dssp             CCSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSE
T ss_pred             cccEEEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCE
Confidence            36889999999999999999999999999888888888888999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHH
Q 028792           84 IIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFM  163 (203)
Q Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  163 (203)
                      +|+|||++++.++..+..|+..+......+.|+++|+||.|+........+++.+++...++++++|||++|+|++++|.
T Consensus        82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~f~  161 (173)
T d2fu5c1          82 IMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFF  161 (173)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHH
T ss_pred             EEEEEECCChhhHHHHHHHHHHhhhhccCCceEEEEEecccchhhcccHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHH
Confidence            99999999999999999999998777777899999999999988888888889999999999999999999999999999


Q ss_pred             HHHHHHHHHhc
Q 028792          164 AMAASIKNRMA  174 (203)
Q Consensus       164 ~l~~~~~~~~~  174 (203)
                      +|++.+.++.+
T Consensus       162 ~l~~~i~~k~~  172 (173)
T d2fu5c1         162 TLARDIKAKMD  172 (173)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHhcC
Confidence            99999977654

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.2e-37  Score=215.90  Aligned_cols=163  Identities=34%  Similarity=0.640  Sum_probs=152.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEE
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVV   87 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (203)
                      .+||+++|++|+|||||+++|..+.+...+.+|.+.+........++..+.+.+||++|+.++...+..++..+|++++|
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v   81 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV   81 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEE
Confidence            48999999999999999999999999888889998888888889999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHH
Q 028792           88 YDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAA  167 (203)
Q Consensus        88 ~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  167 (203)
                      ||++++++++.+..|++.+..... +.|+++|+||+|+.+.+.+..+++.++++.++++++++||++|.|++++|++|++
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~~-~~~iilVgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~  160 (164)
T d1z2aa1          82 FSTTDRESFEAISSWREKVVAEVG-DIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAE  160 (164)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHC-SCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHH
T ss_pred             EeccchhhhhhcccccccccccCC-CceEEEeeccCCcccceeeeehhhHHHHHHcCCEEEEeccCCCcCHHHHHHHHHH
Confidence            999999999999999999877655 6899999999999888888899999999999999999999999999999999999


Q ss_pred             HHHH
Q 028792          168 SIKN  171 (203)
Q Consensus       168 ~~~~  171 (203)
                      .+++
T Consensus       161 ~~lq  164 (164)
T d1z2aa1         161 KHLQ  164 (164)
T ss_dssp             HHHC
T ss_pred             HHhC
Confidence            8763

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-36  Score=214.31  Aligned_cols=172  Identities=51%  Similarity=0.835  Sum_probs=155.5

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEE
Q 028792            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI   84 (203)
Q Consensus         5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (203)
                      .++.+||+|+|++|||||||+++|.++.+...+.++.+.......+..++..+.+.+||++|++.+...+..++..+|++
T Consensus         1 ~~~~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~   80 (175)
T d2f9la1           1 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGA   80 (175)
T ss_dssp             CSEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEE
T ss_pred             CCEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeE
Confidence            37899999999999999999999999999888888888888888889999999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHH
Q 028792           85 IVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMA  164 (203)
Q Consensus        85 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  164 (203)
                      ++|||.++++++..+..|+..+......+.|+++|+||+|+.+......+....+...++.++++|||++|+|++++|.+
T Consensus        81 i~v~d~~~~~S~~~~~~~~~~i~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~i~e~f~~  160 (175)
T d2f9la1          81 LLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKN  160 (175)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEEECCCcccchhHHHHHHHHHHhcCCCCcEEEEEeeecccccccchHHHHHHhhcccCceEEEEecCCCcCHHHHHHH
Confidence            99999999999999999999998887778999999999999877777778888888899999999999999999999999


Q ss_pred             HHHHHHHHhccC
Q 028792          165 MAASIKNRMASQ  176 (203)
Q Consensus       165 l~~~~~~~~~~~  176 (203)
                      |++.+.+...++
T Consensus       161 l~~~i~~~~~~~  172 (175)
T d2f9la1         161 ILTEIYRIVSQK  172 (175)
T ss_dssp             HHHHHHHHHHTS
T ss_pred             HHHHHHHHhhhc
Confidence            999987665543

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-36  Score=214.78  Aligned_cols=170  Identities=53%  Similarity=0.876  Sum_probs=153.5

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      .|.+||+|+|++|||||||+++|.++++.+.+.++.+...........+..+.+.+||++|+..+...+..++..+|++|
T Consensus         1 ~y~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i   80 (173)
T d2a5ja1           1 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL   80 (173)
T ss_dssp             CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEE
T ss_pred             CeeEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEE
Confidence            37899999999999999999999999998888888888888888888888999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHH
Q 028792           86 VVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAM  165 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  165 (203)
                      +|||++++++++.+..|+..+......+.|+++|+||+|+...+....++..++++.++++++++||++|.|++++|.+|
T Consensus        81 lv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~a~~~~~~~~e~Sa~tg~~V~e~f~~i  160 (173)
T d2a5ja1          81 LVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINT  160 (173)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHH
T ss_pred             EEEeecChHHHHhHHHHHHHHHHhCCCCCeEEEEecCCchhhhhhhHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHH
Confidence            99999999999999999998888777789999999999998777888899999999999999999999999999999999


Q ss_pred             HHHHHHHhcc
Q 028792          166 AASIKNRMAS  175 (203)
Q Consensus       166 ~~~~~~~~~~  175 (203)
                      ++.+.++.++
T Consensus       161 ~~~i~~~~~~  170 (173)
T d2a5ja1         161 AKEIYRKIQQ  170 (173)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHc
Confidence            9998876654

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-36  Score=211.56  Aligned_cols=161  Identities=43%  Similarity=0.749  Sum_probs=151.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEE
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVY   88 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (203)
                      |||+++|.+|||||||+++|.++++...+.++.+..........++..+.+.+||++|++.+...+..++..+|++++||
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~   80 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVY   80 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEee
Confidence            69999999999999999999999999999999888888888888888999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHHH
Q 028792           89 DVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAAS  168 (203)
Q Consensus        89 d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~  168 (203)
                      |++++.++..+..|+..+......+.|+++|+||.|+.+......+++.++++.+++++++|||++|+|++++|.+|.+.
T Consensus        81 d~~~~~s~~~i~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~v~e~f~~i~~~  160 (164)
T d1yzqa1          81 DITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAA  160 (164)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             ccccccchhhhHhhHHHHHHhcCCCceEEEEecccchhhhhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHHHHHHh
Confidence            99999999999999999887777789999999999998877888899999999999999999999999999999999886


Q ss_pred             H
Q 028792          169 I  169 (203)
Q Consensus       169 ~  169 (203)
                      +
T Consensus       161 l  161 (164)
T d1yzqa1         161 L  161 (164)
T ss_dssp             S
T ss_pred             h
Confidence            5

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=6.4e-36  Score=209.81  Aligned_cols=164  Identities=41%  Similarity=0.713  Sum_probs=154.0

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      .+.+||+++|.+|||||||+++|..+.+...+.++............++....+.+||++|++++..++..++..+|+++
T Consensus         2 ~k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (167)
T d1z0ja1           2 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI   81 (167)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceE
Confidence            36799999999999999999999999999999999988888888888988899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHH
Q 028792           86 VVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAM  165 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  165 (203)
                      +|||+++++++..+..|+..+........|+++|+||+|+.+.+.+..+++.++++..++++++|||++|.||+++|.+|
T Consensus        82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~nV~e~f~~l  161 (167)
T d1z0ja1          82 IVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEI  161 (167)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             EEeeechhhhhhhHHHhhhhhhhccCCcceEEEecccchhccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHH
Confidence            99999999999999999988887777789999999999998778889999999999999999999999999999999999


Q ss_pred             HHHH
Q 028792          166 AASI  169 (203)
Q Consensus       166 ~~~~  169 (203)
                      .+.+
T Consensus       162 ~~~i  165 (167)
T d1z0ja1         162 SRRI  165 (167)
T ss_dssp             HHHC
T ss_pred             HHhC
Confidence            8875

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.2e-36  Score=210.26  Aligned_cols=164  Identities=31%  Similarity=0.505  Sum_probs=149.1

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      .+.+||+|+|++|||||||+++|.++.+...+.+|.+..+ ...+..++..+.+.+||++|..++..++..++..+|+++
T Consensus         2 ~k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~i   80 (167)
T d1xtqa1           2 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI   80 (167)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEE
T ss_pred             CcceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeccc-ceEEecCcEEEEeeecccccccccccccchhhhhhhhhh
Confidence            3568999999999999999999999998888888887665 466778999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHH
Q 028792           86 VVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMA  164 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  164 (203)
                      +|||+++++++..+..|+..+.... ..+.|+++|+||+|+...+.++.+++.++++.++++|++|||++|.|++++|..
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  160 (167)
T d1xtqa1          81 LVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRR  160 (167)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHH
T ss_pred             hhcccchhhhhhhhhhhhhhhhhcccccccceeeeccccccccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHH
Confidence            9999999999999999998886654 457899999999999887888999999999999999999999999999999999


Q ss_pred             HHHHHH
Q 028792          165 MAASIK  170 (203)
Q Consensus       165 l~~~~~  170 (203)
                      |+..+.
T Consensus       161 li~~~~  166 (167)
T d1xtqa1         161 IILEAE  166 (167)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            998764

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-36  Score=216.20  Aligned_cols=172  Identities=43%  Similarity=0.819  Sum_probs=151.9

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECC----------eEEEEEEEeCCChhhhchh
Q 028792            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDG----------KTIKLQIWDTAGQERFRTI   73 (203)
Q Consensus         4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~i~D~~g~~~~~~~   73 (203)
                      +.++.+||+++|++|||||||+++|+++.+...+.++.+.++....+..++          ..+.+.+||++|++++..+
T Consensus         1 ~~d~~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~   80 (186)
T d2f7sa1           1 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSL   80 (186)
T ss_dssp             CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHH
T ss_pred             CCCEEEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHH
Confidence            468899999999999999999999999998888888877777666655433          3468999999999999999


Q ss_pred             hhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEec
Q 028792           74 TSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSA  152 (203)
Q Consensus        74 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  152 (203)
                      +..++.++|++|+|||++++.+++.+..|+..+.... ....|+++|+||.|+...+.+..+++.++++.+++++++|||
T Consensus        81 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sa  160 (186)
T d2f7sa1          81 TTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSA  160 (186)
T ss_dssp             HHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBT
T ss_pred             HHHHHhcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccchhhhcchHHHHHHHHHHcCCEEEEEeC
Confidence            9999999999999999999999999999988765443 346789999999999888889999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHhcc
Q 028792          153 KSATNVEQAFMAMAASIKNRMAS  175 (203)
Q Consensus       153 ~~~~gi~~~~~~l~~~~~~~~~~  175 (203)
                      ++|+|++++|.+|.+.+.++.++
T Consensus       161 k~~~~i~e~f~~l~~~i~~k~~~  183 (186)
T d2f7sa1         161 ATGQNVEKAVETLLDLIMKRMEQ  183 (186)
T ss_dssp             TTTBTHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHh
Confidence            99999999999999998876543

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9e-36  Score=209.85  Aligned_cols=165  Identities=33%  Similarity=0.582  Sum_probs=145.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEE
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVV   87 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (203)
                      .+||+++|.+|||||||+++|..+.+...+.++.+ +.....+..++..+.+.+||++|..++......++..+|++++|
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv   83 (171)
T d2erya1           5 KYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLV   83 (171)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCC-EEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccc-cceeeeeeecccccccccccccccccccccccccccccceEEEe
Confidence            48999999999999999999999998888877765 45567777899999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHH
Q 028792           88 YDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMA  166 (203)
Q Consensus        88 ~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  166 (203)
                      ||.++++++..+..|+..+.... ....|+++|+||+|+...+.+..+++.++++.+++++++|||++|.|++++|.+|+
T Consensus        84 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~i~e~f~~l~  163 (171)
T d2erya1          84 FSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELV  163 (171)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSCSSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHH
T ss_pred             eccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhhhccchHHHHHHHHHHcCCEEEEEcCCCCcCHHHHHHHHH
Confidence            99999999999999998765543 45789999999999988888999999999999999999999999999999999999


Q ss_pred             HHHHHHh
Q 028792          167 ASIKNRM  173 (203)
Q Consensus       167 ~~~~~~~  173 (203)
                      +.+.+++
T Consensus       164 ~~i~k~~  170 (171)
T d2erya1         164 RVIRKFQ  170 (171)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhh
Confidence            9886543

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=100.00  E-value=3.6e-36  Score=211.30  Aligned_cols=163  Identities=39%  Similarity=0.652  Sum_probs=145.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEE
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVV   87 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (203)
                      .+||+++|++|||||||+++|..+.+...+.+|.+..+ ...+..++..+.+.+||++|..++..++..++.++|++++|
T Consensus         4 ~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv   82 (168)
T d1u8za_           4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV   82 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCCCcccCCcccccc-ccccccccccccccccccccccchhhhhhhcccccceeEEE
Confidence            58999999999999999999999999888888887554 35667889999999999999999988899999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHH
Q 028792           88 YDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMA  166 (203)
Q Consensus        88 ~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  166 (203)
                      ||+++++++..+..|+..+.... ..+.|+++|+||+|+.+.+.++.+++.++++.+++++++|||++|.|++++|.+|+
T Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l~  162 (168)
T d1u8za_          83 FSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLM  162 (168)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             eeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHHHH
Confidence            99999999999999999887654 35789999999999988778899999999999999999999999999999999999


Q ss_pred             HHHHH
Q 028792          167 ASIKN  171 (203)
Q Consensus       167 ~~~~~  171 (203)
                      +.+..
T Consensus       163 ~~i~~  167 (168)
T d1u8za_         163 REIRA  167 (168)
T ss_dssp             HHHHT
T ss_pred             HHHHC
Confidence            88753

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.3e-35  Score=208.65  Aligned_cols=163  Identities=36%  Similarity=0.611  Sum_probs=148.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEE
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVV   87 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (203)
                      .+||+++|++|+|||||++++.++.+.+.+.++.+..+ ...+..++..+.+.+||++|...+...+..+++.+|++++|
T Consensus         4 t~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~llv   82 (169)
T d1x1ra1           4 TYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIV   82 (169)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeecc-ccccccccccccccccccccccccccchhhhhhhccEEEEe
Confidence            58999999999999999999999998888888776444 45667889999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCC-CHHHHHHHH
Q 028792           88 YDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSAT-NVEQAFMAM  165 (203)
Q Consensus        88 ~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-gi~~~~~~l  165 (203)
                      ||++++++|..+..|+..+.+.. ..+.|+++++||+|+...+.++.+++.++++.++++++++||+++. ||+++|..|
T Consensus        83 ~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~Sak~~~~nV~~~F~~l  162 (169)
T d1x1ra1          83 YSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDL  162 (169)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHHHH
T ss_pred             cccccchhhhccchhhHHHHhhccccCccEEEEecccchhhhceeehhhHHHHHHHcCCEEEEEcCCCCCcCHHHHHHHH
Confidence            99999999999999999986654 3578999999999999888899999999999999999999999886 999999999


Q ss_pred             HHHHHH
Q 028792          166 AASIKN  171 (203)
Q Consensus       166 ~~~~~~  171 (203)
                      ++.+.+
T Consensus       163 ~~~i~~  168 (169)
T d1x1ra1         163 VRVIRQ  168 (169)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            998875

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-35  Score=211.10  Aligned_cols=163  Identities=27%  Similarity=0.418  Sum_probs=141.3

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEE
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV   86 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (203)
                      +.+||+++|++|||||||+++|..+.+...+.+|.+. ........++..+.+.+||++|++++...+..++.++|++++
T Consensus         2 ~~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il   80 (191)
T d2ngra_           2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFD-NYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV   80 (191)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEE-EEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred             CceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceee-ecceeEeeCCceeeeeccccccchhhhhhhhhcccccceeec
Confidence            4689999999999999999999999998888888764 344556678888999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHcC-CCEEEEecC
Q 028792           87 VYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN------------KVVSYETAKAFADEIG-IPFMETSAK  153 (203)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~  153 (203)
                      |||+++++||+.+..|+.........+.|+++|+||.|+.+.            ..+..+++.+++..++ +++++|||+
T Consensus        81 v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk  160 (191)
T d2ngra_          81 CFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSAL  160 (191)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSCEEECCTT
T ss_pred             ccccchHHHHHHHHHHHHHHHhhcCCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcCCCeEEEEeCC
Confidence            999999999999987555544444457999999999998633            3577888999999875 799999999


Q ss_pred             CCCCHHHHHHHHHHHHH
Q 028792          154 SATNVEQAFMAMAASIK  170 (203)
Q Consensus       154 ~~~gi~~~~~~l~~~~~  170 (203)
                      +|.||+++|+.|+..+.
T Consensus       161 ~~~~V~e~f~~l~~~~~  177 (191)
T d2ngra_         161 TQKGLKNVFDEAILAAL  177 (191)
T ss_dssp             TCTTHHHHHHHHHHHHT
T ss_pred             CCcCHHHHHHHHHHHHh
Confidence            99999999999988764

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-35  Score=211.80  Aligned_cols=168  Identities=30%  Similarity=0.477  Sum_probs=145.5

Q ss_pred             CCCCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCC
Q 028792            2 NNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGA   81 (203)
Q Consensus         2 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~   81 (203)
                      +++....+||+++|.+|||||||+++|+.+.+...+.+|.. +.....+...+..+.+.+||++|++.+...+..++.++
T Consensus         3 ~~~~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~-~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~a   81 (185)
T d2atxa1           3 HGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMT   81 (185)
T ss_dssp             SCCEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSC-CCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTC
T ss_pred             CCCCCcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCcee-eeeeEEEeeCCceEEeecccccccchhhhhhhhccccc
Confidence            34778899999999999999999999999999888888875 44556667788889999999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC------------CcccCHHHHHHHHHHcC-CCEE
Q 028792           82 HGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTA------------NKVVSYETAKAFADEIG-IPFM  148 (203)
Q Consensus        82 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~------------~~~~~~~~~~~~~~~~~-~~~~  148 (203)
                      |++++|||++++++|+++..|+.........+.|+++|+||+|+.+            .+.++.+++.++++.++ +.|+
T Consensus        82 ~~~ilv~d~t~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~~~~~  161 (185)
T d2atxa1          82 DVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYV  161 (185)
T ss_dssp             SEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEE
T ss_pred             ceeeeccccchHHHHHHHHHHHHHHHHhcCCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcCCCEEE
Confidence            9999999999999999877644444333345799999999999865            34678888999999988 6999


Q ss_pred             EEecCCCCCHHHHHHHHHHHHH
Q 028792          149 ETSAKSATNVEQAFMAMAASIK  170 (203)
Q Consensus       149 ~~Sa~~~~gi~~~~~~l~~~~~  170 (203)
                      +|||++|.||+++|+.+++.++
T Consensus       162 E~SAk~~~gv~e~F~~li~~il  183 (185)
T d2atxa1         162 ECSALTQKGLKTVFDEAIIAIL  183 (185)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EecCCCCcCHHHHHHHHHHHHc
Confidence            9999999999999999998875

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5e-35  Score=205.78  Aligned_cols=166  Identities=52%  Similarity=0.960  Sum_probs=144.1

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-ccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcE
Q 028792            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESY-ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG   83 (203)
Q Consensus         5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   83 (203)
                      ++..+||+++|+++||||||+++|+.+.+.... .++.+.++....+..++..+.+.+||+||++.+...+..++.++|+
T Consensus         3 ~d~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~   82 (170)
T d2g6ba1           3 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA   82 (170)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred             CceEEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCce
Confidence            578899999999999999999999988875544 4556777888888899999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHH
Q 028792           84 IIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFM  163 (203)
Q Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  163 (203)
                      +++|||+++++++..+..|+..+........|+++++||.|......+..+++..+++.++++++++||++|.|++++|.
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~d~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~  162 (170)
T d2g6ba1          83 LLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFT  162 (170)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHH
T ss_pred             eEEEecCCcccchhhhhhhhhhhhhccCCCceEEEEEeeechhhcccccHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHH
Confidence            99999999999999999998888777777789999999999988888999999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 028792          164 AMAASIK  170 (203)
Q Consensus       164 ~l~~~~~  170 (203)
                      +|++.+.
T Consensus       163 ~l~~~i~  169 (170)
T d2g6ba1         163 AIAKELK  169 (170)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHcC
Confidence            9998875

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-35  Score=208.22  Aligned_cols=164  Identities=48%  Similarity=0.797  Sum_probs=153.2

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEE
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV   86 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (203)
                      -.+||+++|.+|||||||+++|..+.+...+.++.+..+........+..+.+.+||++|++.+...+..++.++|++++
T Consensus         5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   84 (170)
T d1r2qa_           5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIV   84 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEEE
Confidence            35899999999999999999999999999989999988888888899999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHH
Q 028792           87 VYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMA  166 (203)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  166 (203)
                      |+|+++++++..+..|+..+......+.|+++|+||+|+...+.++.+++.+++..+++++++|||++|.||+++|.+|+
T Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~SAk~g~~V~e~f~~l~  164 (170)
T d1r2qa_          85 VYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIA  164 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             EeccchhhHHHHHHHHhhhhhhccCCCceEEeecccccccccccccHHHHHHHHHhcCCEEEEeeCCCCCCHHHHHHHHH
Confidence            99999999999999999988777777899999999999988888999999999999999999999999999999999998


Q ss_pred             HHHH
Q 028792          167 ASIK  170 (203)
Q Consensus       167 ~~~~  170 (203)
                      +.+.
T Consensus       165 ~~i~  168 (170)
T d1r2qa_         165 KKLP  168 (170)
T ss_dssp             HTSC
T ss_pred             HHHh
Confidence            8653

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.9e-36  Score=211.18  Aligned_cols=161  Identities=33%  Similarity=0.520  Sum_probs=144.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEE
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVV   87 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (203)
                      .+||+++|.+|||||||+++|+.+.+...+.+|.+..+ ......++..+.+.+||++|.+.+...+..++..+|++++|
T Consensus         2 ~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~-~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv   80 (171)
T d2erxa1           2 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV   80 (171)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeecc-ccceeeccccceeccccccccccccccccccccceeEEEEE
Confidence            48999999999999999999999998888888887444 44567888889999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHH
Q 028792           88 YDVTDQESFNNVKQWLNEIDRYAS--ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAM  165 (203)
Q Consensus        88 ~d~~~~~s~~~~~~~~~~l~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  165 (203)
                      ||+++++++..+..|+..+.....  .+.|+++|+||+|+...+.+..+++.++++.+++++++|||++|.|++++|..|
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l  160 (171)
T d2erxa1          81 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQEL  160 (171)
T ss_dssp             EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHH
T ss_pred             eecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHHH
Confidence            999999999999999888765433  578999999999998778889999999999999999999999999999999999


Q ss_pred             HHHH
Q 028792          166 AASI  169 (203)
Q Consensus       166 ~~~~  169 (203)
                      ++.+
T Consensus       161 ~~~~  164 (171)
T d2erxa1         161 LNLE  164 (171)
T ss_dssp             HHTC
T ss_pred             HHHH
Confidence            8754

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-35  Score=206.85  Aligned_cols=163  Identities=39%  Similarity=0.653  Sum_probs=147.5

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEE
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV   86 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (203)
                      +.+||+++|++|||||||+++|+++.+...+.++.+ +........++..+.+.+||++|+..+......++.++|++++
T Consensus         2 k~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~il   80 (167)
T d1kaoa_           2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL   80 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC-EEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCcee-eeeeeeeecCcceEeeccccCCCccccccchHHHhhcccceee
Confidence            579999999999999999999999998888877776 4455667788889999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHH
Q 028792           87 VYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAM  165 (203)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  165 (203)
                      |||+++++++..+..|+..+..... .+.|+++|+||+|+...+....+++..+++.+++++++|||++|.|++++|.+|
T Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~i~e~f~~i  160 (167)
T d1kaoa_          81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEI  160 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHH
T ss_pred             eeeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchhhcccchHHHHHHHHHHcCCeEEEECCCCCcCHHHHHHHH
Confidence            9999999999999999988876543 578999999999998877888899999999999999999999999999999999


Q ss_pred             HHHHH
Q 028792          166 AASIK  170 (203)
Q Consensus       166 ~~~~~  170 (203)
                      ++.+.
T Consensus       161 ~~~i~  165 (167)
T d1kaoa_         161 VRQMN  165 (167)
T ss_dssp             HHHHH
T ss_pred             HHHHc
Confidence            98764

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.1e-35  Score=205.87  Aligned_cols=164  Identities=32%  Similarity=0.523  Sum_probs=143.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEE
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVV   87 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (203)
                      .+||+++|++|||||||+++|.++.+...+.||.+..+.. .+..++..+.+.+||++|...+. ....++..+|++++|
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~-~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv   79 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRH-QATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLV   79 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEE-EEEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeccccc-cccccccceEEEEeecccccccc-cchhhhcccccceee
Confidence            4899999999999999999999999999988988766554 44568888999999999987664 455678899999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCC-HHHHHHHH
Q 028792           88 YDVTDQESFNNVKQWLNEIDRY-ASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATN-VEQAFMAM  165 (203)
Q Consensus        88 ~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g-i~~~~~~l  165 (203)
                      ||+++++++..+..|+..+... ...+.|+++|+||+|+...+.++.+++.++++.++++|++|||++|.| |+++|..|
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~Saktg~gnV~e~F~~l  159 (168)
T d2atva1          80 YDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYEL  159 (168)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHH
T ss_pred             cccCCccchhhhhhhcccccccccccCcceeeeccchhhhhhccCcHHHHHHHHHHhCCeEEEEccccCCcCHHHHHHHH
Confidence            9999999999999987765443 335799999999999987778899999999999999999999999985 99999999


Q ss_pred             HHHHHHHh
Q 028792          166 AASIKNRM  173 (203)
Q Consensus       166 ~~~~~~~~  173 (203)
                      ++.+.+++
T Consensus       160 ~~~i~~~r  167 (168)
T d2atva1         160 CREVRRRR  167 (168)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhc
Confidence            99887664

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.2e-35  Score=203.93  Aligned_cols=164  Identities=56%  Similarity=1.021  Sum_probs=145.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEE
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVV   87 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (203)
                      .+||+++|.+|+|||||+++|+.+.+...+.++.+.++....+..++..+.+.+||+||++.+..++..+++++|++++|
T Consensus         2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T d1g16a_           2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHH
Q 028792           88 YDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAA  167 (203)
Q Consensus        88 ~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  167 (203)
                      ||.+++++++.+..|+..+........|++++++|.|+.. .....+++.+++..+++++++|||++|+|++++|.+|++
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~e~f~~l~~  160 (166)
T d1g16a_          82 YDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAK  160 (166)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTT-CCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHH
T ss_pred             EECCCccCHHHHHhhhhhhhccccCcceeeeecchhhhhh-hhhhHHHHHHHHHhcCCeEEEECCCCCCCHHHHHHHHHH
Confidence            9999999999999998888887777889999999999754 456678899999999999999999999999999999999


Q ss_pred             HHHHH
Q 028792          168 SIKNR  172 (203)
Q Consensus       168 ~~~~~  172 (203)
                      .+.++
T Consensus       161 ~i~~k  165 (166)
T d1g16a_         161 LIQEK  165 (166)
T ss_dssp             HHHHT
T ss_pred             HHHhc
Confidence            88764

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-34  Score=204.04  Aligned_cols=163  Identities=30%  Similarity=0.521  Sum_probs=141.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEE
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVV   87 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (203)
                      ..||+|+|++|+|||||+++|..+.+...+.+|.+ .........++..+.+.+||++|++.+...+..++.++|++|+|
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMC   80 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE-EEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCcee-eeccccccccccceeeeccccCccchhcccchhhcccchhhhhh
Confidence            47999999999999999999999999888888776 44456667888889999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHcC-CCEEEEecCC
Q 028792           88 YDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN------------KVVSYETAKAFADEIG-IPFMETSAKS  154 (203)
Q Consensus        88 ~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~  154 (203)
                      ||++++++|+.+..|+..+......+.|+++++||+|+.+.            +.+..++..++++.++ .+|++|||++
T Consensus        81 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SAkt  160 (177)
T d1kmqa_          81 FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT  160 (177)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTT
T ss_pred             cccchhHHHHHHHHHHHHHHHHhCCCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCcEEEEecCCC
Confidence            99999999999887555544444457999999999998653            3567888999999988 5899999999


Q ss_pred             CCCHHHHHHHHHHHHHH
Q 028792          155 ATNVEQAFMAMAASIKN  171 (203)
Q Consensus       155 ~~gi~~~~~~l~~~~~~  171 (203)
                      |.|++++|+.+.+.+++
T Consensus       161 ~~gi~e~F~~i~~~~l~  177 (177)
T d1kmqa_         161 KDGVREVFEMATRAALQ  177 (177)
T ss_dssp             CTTHHHHHHHHHHHHHC
T ss_pred             CcCHHHHHHHHHHHHhC
Confidence            99999999999998763

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-35  Score=209.26  Aligned_cols=161  Identities=32%  Similarity=0.617  Sum_probs=141.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEE
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVV   87 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (203)
                      .+||+++|++|||||||+++|.++.+...+.+|.+.++....+..++..+.+.+||++|+..+...+..++.++|++++|
T Consensus         3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   82 (170)
T d1i2ma_           3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIM   82 (170)
T ss_dssp             EEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchhhc
Confidence            58999999999999999999999999999899999888888888889899999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHH
Q 028792           88 YDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAA  167 (203)
Q Consensus        88 ~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  167 (203)
                      ||++++++|+.+..|+..+..... +.|+++|+||+|+......  ++...++...+++++++||++|.|++++|.+|.+
T Consensus        83 ~d~~~~~Sf~~~~~~~~~~~~~~~-~~piilvgnK~Dl~~~~~~--~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~  159 (170)
T d1i2ma_          83 FDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR  159 (170)
T ss_dssp             EETTSGGGGTTHHHHHHHHHHHHC-SCCEEEEEECCCCSCSCCT--TTSHHHHSSCSSEEEEEBTTTTBTTTHHHHHHHH
T ss_pred             cccccccccchhHHHHHHHhhccC-CCceeeecchhhhhhhhhh--hHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            999999999999999998876654 6999999999999765433  3455778888999999999999999999999999


Q ss_pred             HHHH
Q 028792          168 SIKN  171 (203)
Q Consensus       168 ~~~~  171 (203)
                      .+..
T Consensus       160 ~l~~  163 (170)
T d1i2ma_         160 KLIG  163 (170)
T ss_dssp             HHHT
T ss_pred             HHcc
Confidence            8863

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.1e-34  Score=204.06  Aligned_cols=162  Identities=41%  Similarity=0.727  Sum_probs=149.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEE
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVV   87 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (203)
                      .+||+++|++|+|||||+++|.++.+...+.++.+..+....+..++..+.+.+||++|.+++...+..++..+|++++|
T Consensus         3 ~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv   82 (170)
T d1ek0a_           3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVV   82 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEEE
Confidence            58999999999999999999999999999999998888888999999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC---CcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHH
Q 028792           88 YDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTA---NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMA  164 (203)
Q Consensus        88 ~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  164 (203)
                      ||++++.+++.+..|+..+........|+++++||.|+.+   .+.+..+++.++++.++++|+++||++|.|++++|.+
T Consensus        83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gV~e~F~~  162 (170)
T d1ek0a_          83 YDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLG  162 (170)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHH
T ss_pred             EeCCcccchhhhhhhhhhhccccccccceeeeecccccccccchhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHHH
Confidence            9999999999999999888777777899999999999754   3577889999999999999999999999999999999


Q ss_pred             HHHHH
Q 028792          165 MAASI  169 (203)
Q Consensus       165 l~~~~  169 (203)
                      |.+.+
T Consensus       163 i~~~i  167 (170)
T d1ek0a_         163 IGEKI  167 (170)
T ss_dssp             HHTTS
T ss_pred             HHHHh
Confidence            87654

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9e-35  Score=203.90  Aligned_cols=163  Identities=36%  Similarity=0.623  Sum_probs=146.0

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEE
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV   86 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (203)
                      +.+||+++|++|||||||+++|..+.+...+.++.+..+ ...+..++..+.+.+||++|...+...+..++..+|++|+
T Consensus         2 r~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   80 (167)
T d1c1ya_           2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL   80 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCcccccc-ceeEEeeeeEEEeccccccCcccccccccccccccceeEE
Confidence            679999999999999999999999999888888877544 4556678888999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHc-CCCEEEEecCCCCCHHHHHHH
Q 028792           87 VYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSYETAKAFADEI-GIPFMETSAKSATNVEQAFMA  164 (203)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~~~~~  164 (203)
                      |||++++++|+.+..|+..+.... ..+.|+++|+||+|+........++...+++.. ++++++|||++|.|++++|.+
T Consensus        81 v~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~F~~  160 (167)
T d1c1ya_          81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYD  160 (167)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHH
T ss_pred             eeeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcccccccchhHHHHHHHHhCCCEEEEEcCCCCcCHHHHHHH
Confidence            999999999999999999886654 357899999999999888888888889998875 689999999999999999999


Q ss_pred             HHHHHH
Q 028792          165 MAASIK  170 (203)
Q Consensus       165 l~~~~~  170 (203)
                      |++.+.
T Consensus       161 l~~~i~  166 (167)
T d1c1ya_         161 LVRQIN  166 (167)
T ss_dssp             HHHHHT
T ss_pred             HHHHhc
Confidence            998764

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.2e-34  Score=200.91  Aligned_cols=163  Identities=36%  Similarity=0.679  Sum_probs=145.6

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEE
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV   86 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (203)
                      +.+||+++|++|||||||+++|+++.++..+.++.+..+... +...+..+.+.+||++|...+...+..++..++++++
T Consensus         2 ~e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ii   80 (166)
T d1ctqa_           2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   80 (166)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEE-EEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeeccc-eeeeceeeeeeeeeccCccccccchhhhhhcccccce
Confidence            468999999999999999999999999888888887665544 5577888999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHH
Q 028792           87 VYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAM  165 (203)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  165 (203)
                      |+|++++.+++.+..|+..+..... .+.|+++|+||+|+.. +....+++.++++.+++++++|||++|+|++++|.+|
T Consensus        81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~i  159 (166)
T d1ctqa_          81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL  159 (166)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred             eecccccccHHHHHHHHHHHHHhcCCCCCeEEEEeccccccc-ccccHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHHHH
Confidence            9999999999999999999877654 4689999999999854 5567888999999999999999999999999999999


Q ss_pred             HHHHHH
Q 028792          166 AASIKN  171 (203)
Q Consensus       166 ~~~~~~  171 (203)
                      ++.+.+
T Consensus       160 ~~~i~~  165 (166)
T d1ctqa_         160 VREIRQ  165 (166)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            998764

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.6e-34  Score=201.18  Aligned_cols=165  Identities=28%  Similarity=0.418  Sum_probs=140.5

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCC-CCccccceeeEEEEEEECCeEEEEEEEeCCC---hhhhchhhhccccCCc
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFADDSYLE-SYISTIGVDFKIRTVEQDGKTIKLQIWDTAG---QERFRTITSSYYRGAH   82 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g---~~~~~~~~~~~~~~~d   82 (203)
                      ..+||+++|++|+|||||+++|.+..... ...++.+.+.....+..++..+.+.+||+++   ++++  .+..++..+|
T Consensus         2 ~~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~--~~~~~~~~~~   79 (172)
T d2g3ya1           2 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGD   79 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHH--HHHCCCCCCS
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccccccccc--cccccccccc
Confidence            56999999999999999999999776543 3345566667778888899999999999875   3333  4567889999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHH
Q 028792           83 GIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQA  161 (203)
Q Consensus        83 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~  161 (203)
                      ++|+|||+++++++..+..|+..+.... ..+.|+++|+||+|+...+.++.+++.+++..+++++++|||++|.|++++
T Consensus        80 ~~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~g~~i~~~  159 (172)
T d2g3ya1          80 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKEL  159 (172)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHH
T ss_pred             eeeeeecccccchhhhhhhhhhhhhhccccCCceEEEEeccccccccccccHHHHHHHHHHcCCeEEEEeCCCCcCHHHH
Confidence            9999999999999999999998886553 357999999999999887888999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHh
Q 028792          162 FMAMAASIKNRM  173 (203)
Q Consensus       162 ~~~l~~~~~~~~  173 (203)
                      |.+|++.+..++
T Consensus       160 f~~l~~~i~~rr  171 (172)
T d2g3ya1         160 FEGIVRQVRLRR  171 (172)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHcc
Confidence            999999987665

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.4e-34  Score=201.36  Aligned_cols=170  Identities=47%  Similarity=0.814  Sum_probs=152.9

Q ss_pred             CCCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCc
Q 028792            3 NEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAH   82 (203)
Q Consensus         3 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d   82 (203)
                      ++....+||+++|.+|+|||||+++|.++.+...+.++.+.......+..++..+.+.+||+||++++..++..++.++|
T Consensus         2 ~~~~~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   81 (177)
T d1x3sa1           2 EDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQ   81 (177)
T ss_dssp             TTEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCC
T ss_pred             CcccceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCC
Confidence            34456799999999999999999999999999998888888888888889999999999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHH
Q 028792           83 GIIVVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQA  161 (203)
Q Consensus        83 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~  161 (203)
                      ++++|||+++++++..+..|+..+..... ...|+++++||.|.. ...+..+++.++++.++++++++||++|+|++++
T Consensus        82 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~-~~~v~~~~~~~~~~~~~~~~~e~Sa~tg~gv~e~  160 (177)
T d1x3sa1          82 GVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE-NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCA  160 (177)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS-SCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred             EEEEEEECCCccccccchhhhhhhcccccccceeeEEEeeccccc-cccccHHHHHHHHHHCCCEEEEEeCCCCCCHHHH
Confidence            99999999999999999999998866543 468889999999964 4567788899999999999999999999999999


Q ss_pred             HHHHHHHHHHHh
Q 028792          162 FMAMAASIKNRM  173 (203)
Q Consensus       162 ~~~l~~~~~~~~  173 (203)
                      |++|++.+.+..
T Consensus       161 f~~l~~~l~~~p  172 (177)
T d1x3sa1         161 FEELVEKIIQTP  172 (177)
T ss_dssp             HHHHHHHHHTSG
T ss_pred             HHHHHHHHccCc
Confidence            999999887543

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.3e-33  Score=197.15  Aligned_cols=165  Identities=41%  Similarity=0.741  Sum_probs=145.1

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      +..+||+|+|++|||||||+++|..+.+...+.++.+..........++..+.+.+||++|...+...+...+..+|+++
T Consensus         4 ~~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   83 (174)
T d1wmsa_           4 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCL   83 (174)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceEE
Confidence            46789999999999999999999999999888888888888888888999999999999999998889999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcC----CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC-CCEEEEecCCCCCHHH
Q 028792           86 VVYDVTDQESFNNVKQWLNEIDRYAS----ENVNKLLVGNKCDLTANKVVSYETAKAFADEIG-IPFMETSAKSATNVEQ  160 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~l~~~~~----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~  160 (203)
                      +++|.+++.++..+..|+..+.....    .+.|+++|+||.|+.+ +.+..+++.+++++.+ +++++|||++|.|+++
T Consensus        84 ~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~-~~v~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e  162 (174)
T d1wmsa_          84 LTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAA  162 (174)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSS-CSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHH
T ss_pred             EEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhh-ccCcHHHHHHHHHHcCCCeEEEEcCCCCcCHHH
Confidence            99999999999999999988765432    4689999999999854 5788889999998875 8999999999999999


Q ss_pred             HHHHHHHHHHH
Q 028792          161 AFMAMAASIKN  171 (203)
Q Consensus       161 ~~~~l~~~~~~  171 (203)
                      +|++|++.++.
T Consensus       163 ~f~~l~~~il~  173 (174)
T d1wmsa_         163 AFEEAVRRVLA  173 (174)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHhc
Confidence            99999998863

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.8e-34  Score=202.61  Aligned_cols=164  Identities=29%  Similarity=0.546  Sum_probs=141.6

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEE
Q 028792            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI   84 (203)
Q Consensus         5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (203)
                      .++.+||+|+|++|||||||+++|+.+.+...+.+|... .....+..++..+.+.+||++|++.+...+..++.++|++
T Consensus         2 ~p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~~-~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~   80 (183)
T d1mh1a_           2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVS   80 (183)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCC-EEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEE
T ss_pred             CceeEEEEEECCCCCCHHHHHHHHHhCCCCcccccceee-ceeeeeeccCcceEEEeecccccccchhhhhhccccccee
Confidence            368899999999999999999999999998888888763 4446677889999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHH-HHHHHHhhcCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHcC-CCEEEE
Q 028792           85 IVVYDVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDLTAN------------KVVSYETAKAFADEIG-IPFMET  150 (203)
Q Consensus        85 i~v~d~~~~~s~~~~~~-~~~~l~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~  150 (203)
                      ++|||++++++|+.+.. |...+... ..+.|+++|+||+|+...            ......+...+++.++ ++|++|
T Consensus        81 ilv~d~~~~~sf~~i~~~~~~~~~~~-~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~E~  159 (183)
T d1mh1a_          81 LICFSLVSPASFENVRAKWYPEVRHH-CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC  159 (183)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHH-STTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred             eeeeccchHHHHHHHHHHHHHHHHHh-CCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCceEEEc
Confidence            99999999999999987 44445444 447899999999998544            2345667888888887 799999


Q ss_pred             ecCCCCCHHHHHHHHHHHHH
Q 028792          151 SAKSATNVEQAFMAMAASIK  170 (203)
Q Consensus       151 Sa~~~~gi~~~~~~l~~~~~  170 (203)
                      ||++|.||+++|..|++.++
T Consensus       160 SAk~~~~V~e~F~~l~~~il  179 (183)
T d1mh1a_         160 SALTQRGLKTVFDEAIRAVL  179 (183)
T ss_dssp             CTTTCTTHHHHHHHHHHHHS
T ss_pred             CCCCCcCHHHHHHHHHHHHc
Confidence            99999999999999999875

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.3e-33  Score=197.58  Aligned_cols=159  Identities=45%  Similarity=0.843  Sum_probs=143.3

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhch-hhhccccCCcEEE
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT-ITSSYYRGAHGII   85 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~~d~~i   85 (203)
                      +.+||+++|++|||||||+++|..+.+...+.++.+................+.+||++|...+.. .+..++.++|++|
T Consensus         1 r~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i   80 (165)
T d1z06a1           1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVV   80 (165)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEE
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceE
Confidence            579999999999999999999999999999888888888888888999999999999999776654 4667889999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCC---CCCHHHH
Q 028792           86 VVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKS---ATNVEQA  161 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~gi~~~  161 (203)
                      +|||++++++++.+..|+..+..... .+.|+++|+||+|+.+...++.+++.++++.+++++++|||++   ++||+++
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAkt~~~~~~V~e~  160 (165)
T d1z06a1          81 FVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAI  160 (165)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHH
T ss_pred             EEEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchhccchhHHHHHHHHHHCCCEEEEEecccCCcCcCHHHH
Confidence            99999999999999999998876543 5789999999999988778899999999999999999999987   5699999


Q ss_pred             HHHH
Q 028792          162 FMAM  165 (203)
Q Consensus       162 ~~~l  165 (203)
                      |.+|
T Consensus       161 F~~l  164 (165)
T d1z06a1         161 FMTL  164 (165)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            9887

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.5e-33  Score=199.05  Aligned_cols=166  Identities=43%  Similarity=0.747  Sum_probs=131.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEEC-CeEEEEEEEeCCChhhhchhhhccccCCcEEEE
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQD-GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV   86 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (203)
                      .+||+++|++|||||||+++|.++++.+.+.++.+........... .....+.+||++|++.+...+..++..+|++++
T Consensus         2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   81 (175)
T d1ky3a_           2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVL   81 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEEE
Confidence            5899999999999999999999999888887777666666555543 445778999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcC----CCCcEEEEEeCCCCCCCc-ccCHHHHHHHHHHcC-CCEEEEecCCCCCHHH
Q 028792           87 VYDVTDQESFNNVKQWLNEIDRYAS----ENVNKLLVGNKCDLTANK-VVSYETAKAFADEIG-IPFMETSAKSATNVEQ  160 (203)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~l~~~~~----~~~p~iiv~nK~D~~~~~-~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~  160 (203)
                      |||++++.++..+..|+..+.....    .+.|+++++||+|+.+.+ .+..+++.+++..++ +++++|||++|.|+++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~gv~e  161 (175)
T d1ky3a_          82 VYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDT  161 (175)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHH
T ss_pred             EeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHHHHHHHcCCCeEEEEeCCCCcCHHH
Confidence            9999999999999999998865432    468999999999997643 467788899999886 7899999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 028792          161 AFMAMAASIKNRM  173 (203)
Q Consensus       161 ~~~~l~~~~~~~~  173 (203)
                      +|.+|++.+++++
T Consensus       162 ~f~~l~~~~l~~~  174 (175)
T d1ky3a_         162 AFEEIARSALQQN  174 (175)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcc
Confidence            9999999888765

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2.1e-33  Score=199.82  Aligned_cols=167  Identities=40%  Similarity=0.701  Sum_probs=147.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEE
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVV   87 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (203)
                      .+||+|+|.+|||||||+++|.++.+...+.+|.+.++....+...+..+.+.+||++|...+...+..++..+|+++++
T Consensus         2 ~~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~   81 (184)
T d1vg8a_           2 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLV   81 (184)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEe
Confidence            58999999999999999999999999999999998888888888888889999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcC----CCCcEEEEEeCCCCCCCcccCHHHHHHHHHH-cCCCEEEEecCCCCCHHHHH
Q 028792           88 YDVTDQESFNNVKQWLNEIDRYAS----ENVNKLLVGNKCDLTANKVVSYETAKAFADE-IGIPFMETSAKSATNVEQAF  162 (203)
Q Consensus        88 ~d~~~~~s~~~~~~~~~~l~~~~~----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gi~~~~  162 (203)
                      +|.+++.++..+..|+..+.....    .+.|+++|+||+|+.+ .....++..+++.. .++++++|||++|.|++++|
T Consensus        82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~f  160 (184)
T d1vg8a_          82 FDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAF  160 (184)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSC-CCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHH
T ss_pred             ecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccc-cchhHHHHHHHHHHhcCCeEEEEcCCCCcCHHHHH
Confidence            999999999999999988765532    3579999999999865 45666667777655 46899999999999999999


Q ss_pred             HHHHHHHHHHhcc
Q 028792          163 MAMAASIKNRMAS  175 (203)
Q Consensus       163 ~~l~~~~~~~~~~  175 (203)
                      .+|++.+.+++.+
T Consensus       161 ~~l~~~i~~~~~~  173 (184)
T d1vg8a_         161 QTIARNALKQETE  173 (184)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcccc
Confidence            9999988876554

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=7.9e-33  Score=195.98  Aligned_cols=163  Identities=28%  Similarity=0.490  Sum_probs=140.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEE
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVV   87 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (203)
                      .+||+++|++|||||||+++|..+.++..+.++.. +.....+..++..+.+.+||++|++.+...+..++..+|++++|
T Consensus         2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (179)
T d1m7ba_           2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVF-ENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLIC   80 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE-EEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCcee-ecccccccccceEEeeccccccccccccccccchhhhhhhhhee
Confidence            47999999999999999999999999888888775 34445566788899999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC------------CcccCHHHHHHHHHHcC-CCEEEEecCC
Q 028792           88 YDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTA------------NKVVSYETAKAFADEIG-IPFMETSAKS  154 (203)
Q Consensus        88 ~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~------------~~~~~~~~~~~~~~~~~-~~~~~~Sa~~  154 (203)
                      ||+++++||+.+..|+.........+.|+++|+||.|+..            ...++.++...++++++ ..|++|||++
T Consensus        81 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~y~E~SAk~  160 (179)
T d1m7ba_          81 FDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQ  160 (179)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTT
T ss_pred             eecccCCCHHHHHHHHHHHHhccCCcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHhCCCeEEEEeCCC
Confidence            9999999999988865554444445799999999999853            34578889999999987 4899999999


Q ss_pred             CC-CHHHHHHHHHHHHHH
Q 028792          155 AT-NVEQAFMAMAASIKN  171 (203)
Q Consensus       155 ~~-gi~~~~~~l~~~~~~  171 (203)
                      |+ |++++|+.++..+++
T Consensus       161 ~~n~i~~~F~~~~~~~l~  178 (179)
T d1m7ba_         161 SENSVRDIFHVATLACVN  178 (179)
T ss_dssp             BHHHHHHHHHHHHHHHHT
T ss_pred             CCcCHHHHHHHHHHHHhc
Confidence            98 599999999998864

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=4.4e-31  Score=186.12  Aligned_cols=162  Identities=25%  Similarity=0.334  Sum_probs=134.1

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEE
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV   86 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (203)
                      ..+||+++|++|||||||++++.++.+... .++... .....+..++..+.+.+||++|+..+     .++.++|++|+
T Consensus         4 p~~ki~vlG~~~vGKTsLi~~~~~~~f~~~-~~t~~~-~~~~~i~v~~~~~~l~i~Dt~g~~~~-----~~~~~ad~~il   76 (175)
T d2bmja1           4 PELRLGVLGDARSGKSSLIHRFLTGSYQVL-EKTESE-QYKKEMLVDGQTHLVLIREEAGAPDA-----KFSGWADAVIF   76 (175)
T ss_dssp             CEEEEEEECCTTTTHHHHHHHHHHSCCCCC-CCSSCE-EEEEEEEETTEEEEEEEEECSSCCCH-----HHHHHCSEEEE
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHhCCCCCc-CCccce-eEEEEeecCceEEEEEEeeccccccc-----ccccccceeEE
Confidence            369999999999999999999999887654 344433 44566778999999999999997653     36788999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcC---CCCcEEEEEeCCCCCC--CcccCHHHHHHHHHH-cCCCEEEEecCCCCCHHH
Q 028792           87 VYDVTDQESFNNVKQWLNEIDRYAS---ENVNKLLVGNKCDLTA--NKVVSYETAKAFADE-IGIPFMETSAKSATNVEQ  160 (203)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~l~~~~~---~~~p~iiv~nK~D~~~--~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gi~~  160 (203)
                      |||++++++|+.+..|+..+.....   ...|+++|+||.|+..  .+.+..+++..++.. ++++|++|||++|.|+++
T Consensus        77 Vfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~~  156 (175)
T d2bmja1          77 VFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDR  156 (175)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHHTSTTEEEEEEBTTTTBTHHH
T ss_pred             EeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHHHHHHhCCCeEEEeCCCCCcCHHH
Confidence            9999999999999999988865533   4678999999988754  456778888888655 468999999999999999


Q ss_pred             HHHHHHHHHHHHhcc
Q 028792          161 AFMAMAASIKNRMAS  175 (203)
Q Consensus       161 ~~~~l~~~~~~~~~~  175 (203)
                      +|..|++.+...+.+
T Consensus       157 ~F~~l~~~i~~~~~~  171 (175)
T d2bmja1         157 VFQEVAQKVVTLRKQ  171 (175)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhh
Confidence            999999988877653

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.97  E-value=6.8e-32  Score=188.58  Aligned_cols=156  Identities=24%  Similarity=0.397  Sum_probs=127.2

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEE
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV   86 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (203)
                      .++||+++|++|||||||+++|..+.+...+.+|.+..+  ..+..++  +.+++||+||+..+...+..++..++++++
T Consensus         1 ~e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   76 (164)
T d1zd9a1           1 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNM--RKITKGN--VTIKLWDIGGQPRFRSMWERYCRGVSAIVY   76 (164)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEE--EEEEETT--EEEEEEEECCSHHHHTTHHHHHTTCSEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeee--eeeeeee--EEEEEeeccccccccccccccccccchhhc
Confidence            368999999999999999999999998888878776443  4455555  789999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCcccCHHHHHHH-----HHHcCCCEEEEecCCCCCHHH
Q 028792           87 VYDVTDQESFNNVKQWLNEIDRY-ASENVNKLLVGNKCDLTANKVVSYETAKAF-----ADEIGIPFMETSAKSATNVEQ  160 (203)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~~  160 (203)
                      |||+++++++.....++..+... ...+.|+++|+||.|+.+..  ...++.+.     +...+++++++||++|+|+++
T Consensus        77 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e  154 (164)
T d1zd9a1          77 MVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL--DEKELIEKMNLSAIQDREICCYSISCKEKDNIDI  154 (164)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHH
T ss_pred             ccccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhh--hHHHHHHHHHHHHHHhCCCEEEEEeCcCCcCHHH
Confidence            99999999999998877766443 33579999999999986542  23333322     223356799999999999999


Q ss_pred             HHHHHHHH
Q 028792          161 AFMAMAAS  168 (203)
Q Consensus       161 ~~~~l~~~  168 (203)
                      +|+||++.
T Consensus       155 ~~~~l~~~  162 (164)
T d1zd9a1         155 TLQWLIQH  162 (164)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHc
Confidence            99999874

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.97  E-value=5.9e-31  Score=183.86  Aligned_cols=158  Identities=23%  Similarity=0.392  Sum_probs=123.8

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEE
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV   86 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (203)
                      +.+||+++|++|||||||+++|.+..+. ...+|.+  .....+..++  +.+.+||+||+..+...+..++..++++++
T Consensus         1 k~~ki~ivG~~~~GKTsLi~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   75 (165)
T d1ksha_           1 RELRLLMLGLDNAGKTTILKKFNGEDVD-TISPTLG--FNIKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLIW   75 (165)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTCCCS-SCCCCSS--EEEEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEEE
T ss_pred             CcEEEEEECCCCCCHHHHHHHHcCCCCC-cccceEe--eeeeeccccc--cceeeeecCcchhhhhHHHhhhhhhhccee
Confidence            4689999999999999999999887653 3445554  3344455555  789999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHH-hhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHH-----HHcCCCEEEEecCCCCCHHH
Q 028792           87 VYDVTDQESFNNVKQWLNEID-RYASENVNKLLVGNKCDLTANKVVSYETAKAFA-----DEIGIPFMETSAKSATNVEQ  160 (203)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~l~-~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~  160 (203)
                      |+|+++..++.....++..+. .....+.|+++|+||.|+.+...  .++.....     ...++++++|||++|+|+++
T Consensus        76 v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e  153 (165)
T d1ksha_          76 VVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALS--CNAIQEALELDSIRSHHWRIQGCSAVTGEDLLP  153 (165)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHH
T ss_pred             eeecccchhHHHHHHhhhhhhhhcccCCCceEEEEeccccccccC--HHHHHHHHHhhhhhcCCCEEEEEECCCCCCHHH
Confidence            999999999988877665543 33346799999999999875433  23332222     12245799999999999999


Q ss_pred             HHHHHHHHHHH
Q 028792          161 AFMAMAASIKN  171 (203)
Q Consensus       161 ~~~~l~~~~~~  171 (203)
                      +|+||++.+.+
T Consensus       154 ~~~~l~~~i~~  164 (165)
T d1ksha_         154 GIDWLLDDISS  164 (165)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHc
Confidence            99999998864

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.97  E-value=2.5e-31  Score=187.67  Aligned_cols=160  Identities=26%  Similarity=0.360  Sum_probs=125.9

Q ss_pred             CCCCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCC
Q 028792            2 NNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGA   81 (203)
Q Consensus         2 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~   81 (203)
                      .+..++.+||+++|++|||||||+++|.++.+.... ++.+  +....+...+  +.+.+||++|.+.+...+..++..+
T Consensus        10 ~~~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~~-~~~~--~~~~~i~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~   84 (176)
T d1fzqa_          10 KSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHIT-PTQG--FNIKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENT   84 (176)
T ss_dssp             SSCCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEE-EETT--EEEEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTC
T ss_pred             hCCCCCEEEEEEECCCCCCHHHHHHHHhcCCCCcce-eeee--eeEEEeccCC--eeEeEeeccccccchhHHHHHhhcc
Confidence            345678899999999999999999999988764332 3333  3444555555  7899999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCcccCHHHHHHH-----HHHcCCCEEEEecCCC
Q 028792           82 HGIIVVYDVTDQESFNNVKQWLNEIDRY-ASENVNKLLVGNKCDLTANKVVSYETAKAF-----ADEIGIPFMETSAKSA  155 (203)
Q Consensus        82 d~~i~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~  155 (203)
                      |++++|||++++.++.++..++..+... ...+.|+++++||+|+.+...  .....+.     +....+++++|||++|
T Consensus        85 ~~ii~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~SA~tg  162 (176)
T d1fzqa_          85 DILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP--ASEIAEGLNLHTIRDRVWQIQSCSALTG  162 (176)
T ss_dssp             SEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTC
T ss_pred             ceeEEeeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEecccccccc--HHHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence            9999999999999999998877666443 335789999999999975432  2222222     2223467999999999


Q ss_pred             CCHHHHHHHHHHH
Q 028792          156 TNVEQAFMAMAAS  168 (203)
Q Consensus       156 ~gi~~~~~~l~~~  168 (203)
                      +|++++|+||.+.
T Consensus       163 ~gv~e~~~~l~~~  175 (176)
T d1fzqa_         163 EGVQDGMNWVCKN  175 (176)
T ss_dssp             TTHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHhc
Confidence            9999999999874

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.97  E-value=2.9e-31  Score=188.36  Aligned_cols=162  Identities=22%  Similarity=0.372  Sum_probs=123.2

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEE
Q 028792            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI   84 (203)
Q Consensus         5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (203)
                      ..+.+||+++|++|||||||+++|....+... .+|.+  .........+  +.+.+||+||+..+...+..++..+|++
T Consensus        14 ~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~~-~~t~~--~~~~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~~~i   88 (182)
T d1moza_          14 SNKELRILILGLDGAGKTTILYRLQIGEVVTT-KPTIG--FNVETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAV   88 (182)
T ss_dssp             CSSCEEEEEEEETTSSHHHHHHHTCCSEEEEE-CSSTT--CCEEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHhcCCCCcc-ccccc--eEEEEEeeCC--EEEEEEecccccccchhHHhhhccceeE
Confidence            45689999999999999999999987765433 34444  3334444555  7899999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHh-hcCCCCcEEEEEeCCCCCCCcccCHHHHHHH-----HHHcCCCEEEEecCCCCCH
Q 028792           85 IVVYDVTDQESFNNVKQWLNEIDR-YASENVNKLLVGNKCDLTANKVVSYETAKAF-----ADEIGIPFMETSAKSATNV  158 (203)
Q Consensus        85 i~v~d~~~~~s~~~~~~~~~~l~~-~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi  158 (203)
                      ++|+|++++.++.+...|+..+.. ....+.|+++++||+|+.+.  .+..++.+.     +...++++++|||++|+|+
T Consensus        89 i~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~e~SA~~g~gv  166 (182)
T d1moza_          89 IFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA--LSASEVSKELNLVELKDRSWSIVASSAIKGEGI  166 (182)
T ss_dssp             EEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTH
T ss_pred             EEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeeccccc--cCHHHHHHHHHHHHHhhCCCEEEEEECCCCCCH
Confidence            999999999999988887766533 33457999999999998643  233333332     2233467999999999999


Q ss_pred             HHHHHHHHHHHHHHh
Q 028792          159 EQAFMAMAASIKNRM  173 (203)
Q Consensus       159 ~~~~~~l~~~~~~~~  173 (203)
                      +++|+||.+.+.+++
T Consensus       167 ~e~~~~l~~~i~~~~  181 (182)
T d1moza_         167 TEGLDWLIDVIKEEQ  181 (182)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcC
Confidence            999999999987653

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.97  E-value=2.4e-30  Score=182.16  Aligned_cols=157  Identities=22%  Similarity=0.429  Sum_probs=121.5

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      .+.+||+++|++|||||||+++|..+..... .+|.+  ..........  +.+.+||+||...+...+..++..+++++
T Consensus        10 ~k~~kIvlvG~~~vGKTSli~rl~~~~~~~~-~~t~~--~~~~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~~~ii   84 (173)
T d1e0sa_          10 NKEMRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVG--FNVETVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGLI   84 (173)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHTTCCCCEEE-EEETT--EEEEEEEETT--EEEEEEEESCCGGGHHHHGGGTTTCCEEE
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCCc-cceee--eeEEEeeccc--eeeEEecCCCcchhhhHHHhhhcccceEE
Confidence            3569999999999999999999998775433 23333  2333333444  78999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHh-hcCCCCcEEEEEeCCCCCCCcccCHHHHHHH-----HHHcCCCEEEEecCCCCCHH
Q 028792           86 VVYDVTDQESFNNVKQWLNEIDR-YASENVNKLLVGNKCDLTANKVVSYETAKAF-----ADEIGIPFMETSAKSATNVE  159 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~l~~-~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~  159 (203)
                      +|+|+++.+++..+..|+..+.. ......|+++++||+|+.+.  ....++...     +...++.+++|||++|+|++
T Consensus        85 ~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~e~SA~tg~gv~  162 (173)
T d1e0sa_          85 FVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY  162 (173)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred             EEEecccchhHHHHHHHHHHHhhhcccccceeeeeeeccccccc--ccHHHHHHHHHHHHHHhCCCEEEEeeCCCCcCHH
Confidence            99999999999998887766543 33457999999999998653  222223222     22235679999999999999


Q ss_pred             HHHHHHHHHH
Q 028792          160 QAFMAMAASI  169 (203)
Q Consensus       160 ~~~~~l~~~~  169 (203)
                      ++|+||.+.+
T Consensus       163 e~~~~l~~~~  172 (173)
T d1e0sa_         163 EGLTWLTSNY  172 (173)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhc
Confidence            9999998754

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.96  E-value=1.8e-28  Score=169.86  Aligned_cols=156  Identities=19%  Similarity=0.305  Sum_probs=119.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEE
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVY   88 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (203)
                      +||+++|++|||||||+++|.++++.........   ....  .+...+.+.+||++|...+...+..++..++++++++
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~   75 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF---NVET--VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSC---CEEE--EECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccccceee---EEEE--EeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEE
Confidence            6899999999999999999998877554433222   1222  3344588999999999999888999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCcccC---HHHHHHHHHHcCCCEEEEecCCCCCHHHHHHH
Q 028792           89 DVTDQESFNNVKQWLNEIDRY-ASENVNKLLVGNKCDLTANKVVS---YETAKAFADEIGIPFMETSAKSATNVEQAFMA  164 (203)
Q Consensus        89 d~~~~~s~~~~~~~~~~l~~~-~~~~~p~iiv~nK~D~~~~~~~~---~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  164 (203)
                      |.+++.++..+..|+..+... .....|+++++||.|+.+.....   .+....+++..++++++|||++|+|++++|+|
T Consensus        76 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAktg~gi~e~~~~  155 (160)
T d1r8sa_          76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDW  155 (160)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHH
T ss_pred             EecChHHHHHHHHHHHHHHHhhcccCceEEEEeecccccccccHHHHHHHHHHHHHhhCCCEEEEeECCCCCCHHHHHHH
Confidence            999999999988877766443 33568999999999987543221   11112233344678999999999999999999


Q ss_pred             HHHHH
Q 028792          165 MAASI  169 (203)
Q Consensus       165 l~~~~  169 (203)
                      |.+.+
T Consensus       156 l~~~l  160 (160)
T d1r8sa_         156 LSNQL  160 (160)
T ss_dssp             HHHHC
T ss_pred             HHhcC
Confidence            98753

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.94  E-value=1.4e-26  Score=162.97  Aligned_cols=157  Identities=21%  Similarity=0.341  Sum_probs=117.1

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      .+.+||+|+|.+|||||||+++|.++++.... ++..  .........+  ..+.+||+++.......+...+..+++++
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~-~~~~--~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~i   87 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIG--SNVEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI   87 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEE-CCSC--SSCEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCccc-cccc--eeEEEEeecc--eEEEEeccccccccccchhhhhccceeee
Confidence            45699999999999999999999998765432 2222  2233344444  78899999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----HcCCCEEEEecCCCCCHH
Q 028792           86 VVYDVTDQESFNNVKQWLNEIDRY-ASENVNKLLVGNKCDLTANKVVSYETAKAFAD-----EIGIPFMETSAKSATNVE  159 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~  159 (203)
                      +++|.++.+++.....+....... .....|+++|+||.|+.....  ..+......     ..+++++++||++|+|++
T Consensus        88 ~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~~Sa~tg~Gi~  165 (177)
T d1zj6a1          88 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMT--VAEISQFLKLTSIKDHQWHIQACCALTGEGLC  165 (177)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred             eecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccCc--HHHHHHHHHHHhhHhcCCEEEEEeCCCCCCHH
Confidence            999999999988877655544333 335799999999999865432  333333322     234679999999999999


Q ss_pred             HHHHHHHHHH
Q 028792          160 QAFMAMAASI  169 (203)
Q Consensus       160 ~~~~~l~~~~  169 (203)
                      ++|+||.+.+
T Consensus       166 e~~~~L~~~l  175 (177)
T d1zj6a1         166 QGLEWMMSRL  175 (177)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999999876

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.94  E-value=1.4e-25  Score=156.36  Aligned_cols=160  Identities=23%  Similarity=0.379  Sum_probs=121.3

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEE
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV   86 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (203)
                      +.+||+++|.+|||||||+++|.++.+.... ++..  ........++  +.+.+||.++...+...+...+...+++++
T Consensus         4 ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~~-~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (169)
T d1upta_           4 REMRILILGLDGAGKTTILYRLQVGEVVTTI-PTIG--FNVETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVIY   78 (169)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSSCCCCC-CCSS--EEEEEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCCccee-cccc--eeeeeeccCc--eEEEEeeccccccccccchhhhhhhhhhhh
Confidence            4599999999999999999999988775432 3332  3333444455  778899999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHH-HHhhcCCCCcEEEEEeCCCCCCCccc---CHHHHHHHHHHcCCCEEEEecCCCCCHHHHH
Q 028792           87 VYDVTDQESFNNVKQWLNE-IDRYASENVNKLLVGNKCDLTANKVV---SYETAKAFADEIGIPFMETSAKSATNVEQAF  162 (203)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~-l~~~~~~~~p~iiv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~  162 (203)
                      ++|+.+..++.....+... +........|+++++||.|+......   ..+....++...+++++++||++|+|++++|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gv~e~~  158 (169)
T d1upta_          79 VVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAM  158 (169)
T ss_dssp             EEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHH
T ss_pred             hhhhhhcchhhhccchhhhhhhhhccccceEEEEEeeccccccccHHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHH
Confidence            9999988887777665444 33334457899999999998754321   1111122334446789999999999999999


Q ss_pred             HHHHHHHHH
Q 028792          163 MAMAASIKN  171 (203)
Q Consensus       163 ~~l~~~~~~  171 (203)
                      ++|.+.+.+
T Consensus       159 ~~l~~~l~~  167 (169)
T d1upta_         159 EWLVETLKS  167 (169)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHh
Confidence            999998754

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.93  E-value=4.9e-25  Score=155.36  Aligned_cols=158  Identities=18%  Similarity=0.135  Sum_probs=109.6

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhcCCCCC-CCccccceeeEEEEEEECCeEEEEEEEeCCChhhh--------chhhh
Q 028792            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLE-SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF--------RTITS   75 (203)
Q Consensus         5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~--------~~~~~   75 (203)
                      ..+.-.|+|+|.+|||||||+++|++.+... ...+..+...........+  ..+.+||+||....        .....
T Consensus         2 ~~~~~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~   79 (178)
T d1wf3a1           2 KTYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFMDQEVY   79 (178)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHHHHHHH
T ss_pred             CccCcEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeeee--eeeeecccccccccccccchhcccccc
Confidence            3456679999999999999999999876432 2223333344444455555  67899999996432        22233


Q ss_pred             ccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC-CCEEEEecCC
Q 028792           76 SYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIG-IPFMETSAKS  154 (203)
Q Consensus        76 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~  154 (203)
                      ..+..+|++++|+|++++..... ..+.+.+.... .+.|+++|+||+|+....   .+....+.+..+ ..++++||++
T Consensus        80 ~~~~~ad~il~v~D~~~~~~~~~-~~i~~~l~~~~-~~~piilv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~iSA~~  154 (178)
T d1wf3a1          80 EALADVNAVVWVVDLRHPPTPED-ELVARALKPLV-GKVPILLVGNKLDAAKYP---EEAMKAYHELLPEAEPRMLSALD  154 (178)
T ss_dssp             HHTSSCSEEEEEEETTSCCCHHH-HHHHHHHGGGT-TTSCEEEEEECGGGCSSH---HHHHHHHHHTSTTSEEEECCTTC
T ss_pred             cccccccceeeeechhhhhcccc-cchhhheeccc-cchhhhhhhcccccccCH---HHHHHHHHhhcccCceEEEecCC
Confidence            45788999999999987654322 33444454443 368999999999986532   233344445554 5789999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 028792          155 ATNVEQAFMAMAASI  169 (203)
Q Consensus       155 ~~gi~~~~~~l~~~~  169 (203)
                      |.|+++++++|.+.+
T Consensus       155 ~~gi~~L~~~i~~~l  169 (178)
T d1wf3a1         155 ERQVAELKADLLALM  169 (178)
T ss_dssp             HHHHHHHHHHHHTTC
T ss_pred             CCCHHHHHHHHHHhC
Confidence            999999999998754

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=2.6e-24  Score=149.05  Aligned_cols=151  Identities=22%  Similarity=0.312  Sum_probs=115.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEEe
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYD   89 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   89 (203)
                      ||+++|++|||||||+++|.++.+.. ..++..  .........+  ..+.+||++|...+...+..++..++++++++|
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   76 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWH--PTSEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVD   76 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCC-CCCCCS--CEEEEECCTT--CCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCe-eeceee--EeEEEeccCC--eeEEEEeeccchhhhhhHhhhhhheeeeeeecc
Confidence            79999999999999999999887653 344443  3333444444  668899999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH------------HcCCCEEEEecCCCC
Q 028792           90 VTDQESFNNVKQWLNEIDRY-ASENVNKLLVGNKCDLTANKVVSYETAKAFAD------------EIGIPFMETSAKSAT  156 (203)
Q Consensus        90 ~~~~~s~~~~~~~~~~l~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~------------~~~~~~~~~Sa~~~~  156 (203)
                      .++..++.....++...... ...+.|+++++||.|+...  ....++.+...            ...+.+++|||++|+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~  154 (166)
T d2qtvb1          77 AADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNA--VSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRN  154 (166)
T ss_dssp             TTCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSC--CCHHHHHHHHTCSSCCC---CCSSCCEEEEEEBTTTTB
T ss_pred             ccchhhhhhhhHHHHhhhhhhccCCceEEEEecccccccc--CCHHHHHHHhhhhhhhHHHhhcccCCCEEEEeeCCCCC
Confidence            99999988877766665443 3357899999999998643  23333332221            123569999999999


Q ss_pred             CHHHHHHHHHH
Q 028792          157 NVEQAFMAMAA  167 (203)
Q Consensus       157 gi~~~~~~l~~  167 (203)
                      |++|+|+||.+
T Consensus       155 Gv~e~~~~l~~  165 (166)
T d2qtvb1         155 GYLEAFQWLSQ  165 (166)
T ss_dssp             SHHHHHHHHTT
T ss_pred             CHHHHHHHHhC
Confidence            99999999964

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=3.4e-25  Score=153.60  Aligned_cols=150  Identities=23%  Similarity=0.290  Sum_probs=109.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCC-CCccccceeeEEEEEEECCeEEEEEEEeCCChhhhc--------hhhhcccc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDSYLE-SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR--------TITSSYYR   79 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--------~~~~~~~~   79 (203)
                      ++|+++|.+|||||||+++|++.+... ...+..........+...+  ..+.++|+||.....        .....++.
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~   79 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQEIE   79 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccC--ceeeeccccccccccccchhHHHHHHHHHHH
Confidence            799999999999999999999776542 2334444444445555666  678899999953321        12334568


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHH
Q 028792           80 GAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVE  159 (203)
Q Consensus        80 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  159 (203)
                      .+|++++++|..+..++.....|...+... ..+.|+++|+||+|+.......       .+..+.+++++||++|+|++
T Consensus        80 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~iilv~NK~Dl~~~~~~~-------~~~~~~~~~~iSAk~~~gi~  151 (161)
T d2gj8a1          80 QADRVLFMVDGTTTDAVDPAEIWPEFIARL-PAKLPITVVRNKADITGETLGM-------SEVNGHALIRLSARTGEGVD  151 (161)
T ss_dssp             TCSEEEEEEETTTCCCCSHHHHCHHHHHHS-CTTCCEEEEEECHHHHCCCCEE-------EEETTEEEEECCTTTCTTHH
T ss_pred             hccccceeeccccccchhhhhhhhhhhhhc-ccccceeeccchhhhhhhHHHH-------HHhCCCcEEEEECCCCCCHH
Confidence            899999999999887766666665555444 3468999999999986542211       11234689999999999999


Q ss_pred             HHHHHHHHH
Q 028792          160 QAFMAMAAS  168 (203)
Q Consensus       160 ~~~~~l~~~  168 (203)
                      +++++|.+.
T Consensus       152 ~L~~~l~~~  160 (161)
T d2gj8a1         152 VLRNHLKQS  160 (161)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhh
Confidence            999999875

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.91  E-value=2.7e-24  Score=153.24  Aligned_cols=157  Identities=23%  Similarity=0.239  Sum_probs=114.4

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEE
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV   86 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (203)
                      +.+||+++|..|||||||+++|....++..     +  .....+....  +.+.+||++|+..+...+..++..++++++
T Consensus         1 ~e~KivllG~~~vGKTsl~~r~~~~~~~t~-----~--~~~~~~~~~~--~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~   71 (195)
T d1svsa1           1 REVKLLLLGAGESGKSTIVKQMKIIHEAGT-----G--IVETHFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIF   71 (195)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHSCCC-----S--EEEEEEEETT--EEEEEEEECCSGGGGGGGGGGCTTCSEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCc-----c--EEEEEEEeee--eeeeeeccccccccccchhhcccCCceeee
Confidence            468999999999999999999987665432     2  2223344444  789999999999999999999999999999


Q ss_pred             EEeCCChhhHH-----------HHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC---------------cccCHHHHHHH-
Q 028792           87 VYDVTDQESFN-----------NVKQWLNEIDRYASENVNKLLVGNKCDLTAN---------------KVVSYETAKAF-  139 (203)
Q Consensus        87 v~d~~~~~s~~-----------~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~---------------~~~~~~~~~~~-  139 (203)
                      |+|.++.+++.           ....|...+........|+++++||.|+...               ......+...+ 
T Consensus        72 v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (195)
T d1svsa1          72 CVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYI  151 (195)
T ss_dssp             EEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHH
T ss_pred             EEeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHH
Confidence            99998877552           2333544454444567899999999985211               11222222221 


Q ss_pred             ----HHH------cCCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 028792          140 ----ADE------IGIPFMETSAKSATNVEQAFMAMAASIKNR  172 (203)
Q Consensus       140 ----~~~------~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~  172 (203)
                          ...      ..+.+++|||++++||+++|..+.+.+++.
T Consensus       152 ~~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il~~  194 (195)
T d1svsa1         152 QCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKN  194 (195)
T ss_dssp             HHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHHhc
Confidence                111      124577899999999999999999888754

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=6.4e-24  Score=151.85  Aligned_cols=160  Identities=20%  Similarity=0.172  Sum_probs=121.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEE
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV   86 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (203)
                      +.+||+++|..|||||||+++|..+.+.  +.||++..  ...+....  +.+++||++|+..+...+..++..++++++
T Consensus         1 ke~Kiv~lG~~~vGKTsll~r~~~~~~~--~~pTiG~~--~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   74 (200)
T d2bcjq2           1 RELKLLLLGTGESGKSTFIKQMRIIHGS--GVPTTGII--EYPFDLQS--VIFRMVDVGGQRSERRKWIHCFENVTSIMF   74 (200)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHTSS--CCCCCSCE--EEEEECSS--CEEEEEECCCSTTGGGGGGGGCSSCSEEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhCCCCC--CCceeeEE--EEEEeccc--eeeeeccccccccccccccccccccceeeE
Confidence            4689999999999999999999877763  55777644  33444444  788999999999999999999999999999


Q ss_pred             EEeCCChh-----------hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc----------------ccCHHHHHHH
Q 028792           87 VYDVTDQE-----------SFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANK----------------VVSYETAKAF  139 (203)
Q Consensus        87 v~d~~~~~-----------s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~----------------~~~~~~~~~~  139 (203)
                      ++|.++.+           .++....|...+......+.|+++++||.|+....                ..+......+
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (200)
T d2bcjq2          75 LVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREF  154 (200)
T ss_dssp             EEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHH
T ss_pred             eeeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHH
Confidence            99998754           24445667777766655689999999999974221                1223333333


Q ss_pred             HHH----------cCCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 028792          140 ADE----------IGIPFMETSAKSATNVEQAFMAMAASIKNR  172 (203)
Q Consensus       140 ~~~----------~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~  172 (203)
                      ...          ..+.+++|||++|+|+.++|+.|.+.+.+.
T Consensus       155 i~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~~  197 (200)
T d2bcjq2         155 ILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL  197 (200)
T ss_dssp             HHHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHHHH
Confidence            221          124578999999999999999999988754

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.91  E-value=1.4e-23  Score=148.15  Aligned_cols=157  Identities=23%  Similarity=0.294  Sum_probs=113.1

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      .+..||+++|++|||||||+++|.++.+.... ++..  .....+..++  ..+..||+.+...+...+.......++++
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~-~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHV-PTLH--PTSEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIV   85 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCC--CSCEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccee-cccc--cceeEEEecc--cccccccccchhhhhhHHhhhhcccceee
Confidence            46789999999999999999999988765432 3333  3334455566  56789999999999888999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHh-hcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHc-----------------CCCE
Q 028792           86 VVYDVTDQESFNNVKQWLNEIDR-YASENVNKLLVGNKCDLTANKVVSYETAKAFADEI-----------------GIPF  147 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~l~~-~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~-----------------~~~~  147 (203)
                      +++|.++...+.....++..... ....+.|+++++||.|+...  .....+.+.....                 ++++
T Consensus        86 ~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (186)
T d1f6ba_          86 FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEA--ISEERLREMFGLYGQTTGKGSVSLKELNARPLEV  163 (186)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTC--CCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred             eeeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCcccc--CCHHHHHHHHhhcccchhhhhhhHHHhhcCCCEE
Confidence            99999999888877765444433 33457999999999998643  3344444433221                 2458


Q ss_pred             EEEecCCCCCHHHHHHHHHHHH
Q 028792          148 METSAKSATNVEQAFMAMAASI  169 (203)
Q Consensus       148 ~~~Sa~~~~gi~~~~~~l~~~~  169 (203)
                      ++|||++|+|++|+|+||.+.+
T Consensus       164 ~~~SA~tg~Gi~e~~~~l~~~i  185 (186)
T d1f6ba_         164 FMCSVLKRQGYGEGFRWMAQYI  185 (186)
T ss_dssp             EECBTTTTBSHHHHHHHHHTTC
T ss_pred             EEEeCCCCCCHHHHHHHHHHhh
Confidence            9999999999999999998753

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.91  E-value=7.6e-24  Score=149.32  Aligned_cols=160  Identities=14%  Similarity=0.147  Sum_probs=107.1

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCc-------cccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccc
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYI-------STIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYY   78 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~   78 (203)
                      -+.++|+++|.+++|||||+|+|++........       ...+.......+..++  ..+.++|+||+..+.......+
T Consensus         3 ~k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~l   80 (179)
T d1wb1a4           3 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAA   80 (179)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHT
T ss_pred             CCCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCC--ccccccccccccccccchhhhh
Confidence            467899999999999999999998643221111       1111122222333444  6788999999998888888888


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccC--HHHHHHHHHHc----CCCEEEEec
Q 028792           79 RGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVS--YETAKAFADEI----GIPFMETSA  152 (203)
Q Consensus        79 ~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~----~~~~~~~Sa  152 (203)
                      ..+|++++++|+.+...... ...+..+..   .+.|+++|+||+|+.......  .+....+.+..    +.+++++||
T Consensus        81 ~~~d~~ilv~d~~~g~~~~~-~~~~~~~~~---~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~iSA  156 (179)
T d1wb1a4          81 DIIDLALIVVDAKEGPKTQT-GEHMLILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISA  156 (179)
T ss_dssp             TSCCEEEEEEETTTCSCHHH-HHHHHHHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCT
T ss_pred             hhccccccccccccccchhh-hhhhhhhhh---cCCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc
Confidence            99999999999987543221 222222222   368999999999987643221  11222222222    368999999


Q ss_pred             CCCCCHHHHHHHHHHHHHH
Q 028792          153 KSATNVEQAFMAMAASIKN  171 (203)
Q Consensus       153 ~~~~gi~~~~~~l~~~~~~  171 (203)
                      ++|+|++++++.|.+.+.+
T Consensus       157 ~~g~gi~eL~~~I~~~l~~  175 (179)
T d1wb1a4         157 KTGFGVDELKNLIITTLNN  175 (179)
T ss_dssp             TTCTTHHHHHHHHHHHHHH
T ss_pred             cCCcCHHHHHHHHHhcCCc
Confidence            9999999999999988764

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.91  E-value=8.9e-24  Score=149.06  Aligned_cols=157  Identities=17%  Similarity=0.158  Sum_probs=104.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhc-------hhhhccccCCc
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR-------TITSSYYRGAH   82 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~~~~~~~~~d   82 (203)
                      .|+++|.+|||||||+|+|++........+..+.......... .....+.+||+||.....       ......+..++
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~   81 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEV-SEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTR   81 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEEC-SSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeeceeee-cCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhh
Confidence            5999999999999999999976544333333333333332222 222568899999943211       12233467899


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhhc--CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHH
Q 028792           83 GIIVVYDVTDQESFNNVKQWLNEIDRYA--SENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQ  160 (203)
Q Consensus        83 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  160 (203)
                      ++++++|..... +.....+...+....  ..++|+++|+||+|+.....  .+...+.....+.+++++||++|+|+++
T Consensus        82 ~~~~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~~~--~~~~~~~~~~~~~~~~~iSA~tg~gid~  158 (180)
T d1udxa2          82 VLLYVLDAADEP-LKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEA--VKALADALAREGLAVLPVSALTGAGLPA  158 (180)
T ss_dssp             EEEEEEETTSCH-HHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHH--HHHHHHHHHTTTSCEEECCTTTCTTHHH
T ss_pred             hhhhhccccccc-ccchhhhhhhhhccccccchhhhhhhhhhhhhhhHHH--HHHHHHHHHhcCCeEEEEEcCCCCCHHH
Confidence            999999986532 223333333322211  12579999999999976433  2345555666789999999999999999


Q ss_pred             HHHHHHHHHH
Q 028792          161 AFMAMAASIK  170 (203)
Q Consensus       161 ~~~~l~~~~~  170 (203)
                      +++.|.+.+.
T Consensus       159 L~~~i~~~l~  168 (180)
T d1udxa2         159 LKEALHALVR  168 (180)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999988774

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.90  E-value=3.9e-23  Score=144.57  Aligned_cols=156  Identities=19%  Similarity=0.184  Sum_probs=100.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCC-CCccccceeeEEEEEEECCeEEEEEEEeCCChhh---------hchhhhcccc
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDSYLE-SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER---------FRTITSSYYR   79 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~~~~~   79 (203)
                      .|+++|.+|||||||+++|++..... ...+..+.......+...+  ..+.++|++|...         +.......+.
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~   79 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYG--KTFKLVDTCGVFDNPQDIISQKMKEVTLNMIR   79 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETT--EEEEEEECTTTTSSGGGCCCHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcceecccCceeeccccccccccc--cccccccccceeeeeccccccccccccccccc
Confidence            68999999999999999999765432 2222222223333444444  6788999998321         2223344568


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHH
Q 028792           80 GAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVE  159 (203)
Q Consensus        80 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  159 (203)
                      .+|++++++|.+...... ...++..+...   +.|+++|+||+|+.+.  ...+...++.+.....++++||++|.|++
T Consensus        80 ~ad~i~~~~~~~~~~~~~-~~~~~~~l~~~---~~pviiv~NK~Dl~~~--~~~~~~~~~~~~~~~~~i~iSAk~g~gid  153 (171)
T d1mkya1          80 EADLVLFVVDGKRGITKE-DESLADFLRKS---TVDTILVANKAENLRE--FEREVKPELYSLGFGEPIPVSAEHNINLD  153 (171)
T ss_dssp             TCSEEEEEEETTTCCCHH-HHHHHHHHHHH---TCCEEEEEESCCSHHH--HHHHTHHHHGGGSSCSCEECBTTTTBSHH
T ss_pred             cCcEEEEeeccccccccc-ccccccccccc---cccccccchhhhhhhh--hhhHHHHHHHhcCCCCeEEEecCCCCCHH
Confidence            899999999987654432 23344444443   5799999999998532  22222233333334678999999999999


Q ss_pred             HHHHHHHHHHHHHh
Q 028792          160 QAFMAMAASIKNRM  173 (203)
Q Consensus       160 ~~~~~l~~~~~~~~  173 (203)
                      +++++|.+.+.+..
T Consensus       154 ~L~~~i~~~l~e~~  167 (171)
T d1mkya1         154 TMLETIIKKLEEKG  167 (171)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhCCCCC
Confidence            99999999886654

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.90  E-value=7.1e-23  Score=145.02  Aligned_cols=162  Identities=23%  Similarity=0.216  Sum_probs=107.7

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCC-CCccccceeeEEEEEEECCeEEEEEEEeCCChhhhc------------h
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLE-SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR------------T   72 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------------~   72 (203)
                      ...++|+|+|.+|+|||||+|+|++..... ...+..+.......+..++  ..+.++|+||.....            .
T Consensus         6 ~~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~   83 (186)
T d1mkya2           6 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDG--RKYVFVDTAGLRRKSRVEPRTVEKYSNY   83 (186)
T ss_dssp             CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETT--EEEEESSCSCC-----------CCSCCH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCC--ceeeeeccCCccccccccccccccchhH
Confidence            345999999999999999999999866432 2223333333344555666  567889999954321            1


Q ss_pred             hhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHc-----CCCE
Q 028792           73 ITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEI-----GIPF  147 (203)
Q Consensus        73 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~  147 (203)
                      .....+..+|++++|+|++.+.. .....+...+..   .+.|+++++||+|+........++..+.....     .+++
T Consensus        84 ~~~~~~~~~dvii~v~d~~~~~~-~~~~~~~~~~~~---~~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i  159 (186)
T d1mkya2          84 RVVDSIEKADVVVIVLDATQGIT-RQDQRMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPL  159 (186)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCCC-HHHHHHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCE
T ss_pred             HHHHHHhcCCEEEEeecccccch-hhHHHHHHHHHH---cCCceeeeccchhhhcchhhhhhhHHHHHHHHhcccCCCeE
Confidence            23334578999999999986543 122333333333   36899999999998766655555544433332     3689


Q ss_pred             EEEecCCCCCHHHHHHHHHHHHHHHh
Q 028792          148 METSAKSATNVEQAFMAMAASIKNRM  173 (203)
Q Consensus       148 ~~~Sa~~~~gi~~~~~~l~~~~~~~~  173 (203)
                      +++||++|.|+++++++|.+.+.++.
T Consensus       160 ~~vSa~~g~gv~~L~~~i~~~~~~~~  185 (186)
T d1mkya2         160 IFTSADKGWNIDRMIDAMNLAYASYT  185 (186)
T ss_dssp             EECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred             EEEeCCCCCCHHHHHHHHHHHHHhCC
Confidence            99999999999999999988777653

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.90  E-value=3.3e-23  Score=146.45  Aligned_cols=153  Identities=18%  Similarity=0.182  Sum_probs=98.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChh-----------h----hchhh
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE-----------R----FRTIT   74 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~-----------~----~~~~~   74 (203)
                      .|+++|.||||||||+|+|++........+..+.+  ...+...+    +.++|+||..           .    +....
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~~~~~~g~T~~--~~~~~~~~----~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~   75 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRK--IIEIEWKN----HKIIDMPGFGFMMGLPKEVQERIKDEIVHFI   75 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTS--CEEEEETT----EEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCEeec--cccccccc----ceecccCCceeccccccccccccchhhhhhh
Confidence            68999999999999999999877654444433333  33344444    5689999941           1    11222


Q ss_pred             hccccCCcEEEEEEeCCChhhHHHHHH-------HHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC---
Q 028792           75 SSYYRGAHGIIVVYDVTDQESFNNVKQ-------WLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIG---  144 (203)
Q Consensus        75 ~~~~~~~d~~i~v~d~~~~~s~~~~~~-------~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~---  144 (203)
                      ...+..+|++++|+|+...........       ....+......+.|+++|+||+|+.+.....   ...+.....   
T Consensus        76 ~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~p~iiv~NK~D~~~~~~~~---~~~~~~~~~~~~  152 (184)
T d2cxxa1          76 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQEV---INFLAEKFEVPL  152 (184)
T ss_dssp             HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHHHH---HHHHHHHHTCCG
T ss_pred             hhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHHcCCCEEEEEeeeehhhhHHHH---HHHHHHHhcccc
Confidence            334578999999999975433221110       0111122222368999999999986543221   112222222   


Q ss_pred             ----CCEEEEecCCCCCHHHHHHHHHHHHHH
Q 028792          145 ----IPFMETSAKSATNVEQAFMAMAASIKN  171 (203)
Q Consensus       145 ----~~~~~~Sa~~~~gi~~~~~~l~~~~~~  171 (203)
                          ..++++||++|+|+++++++|.+.+.+
T Consensus       153 ~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~e  183 (184)
T d2cxxa1         153 SEIDKVFIPISAKFGDNIERLKNRIFEVIRE  183 (184)
T ss_dssp             GGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             cccCCeEEEEECCCCCCHHHHHHHHHHHccC
Confidence                348999999999999999999998865

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=1.9e-23  Score=149.54  Aligned_cols=159  Identities=20%  Similarity=0.251  Sum_probs=110.1

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEE
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV   86 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (203)
                      +.+||+++|.+|||||||+++|.   +...+.||.+.  ....+....  ..+.+||++|+..+...+..++..++++++
T Consensus         1 r~iKivllG~~~vGKTsll~r~~---f~~~~~pTiG~--~~~~~~~~~--~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~   73 (200)
T d1zcba2           1 RLVKILLLGAGESGKSTFLKQMR---IIHGQDPTKGI--HEYDFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILF   73 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHH---HHHSCCCCSSE--EEEEEEETT--EEEEEEEECC-------CTTSCTTCCEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHh---cCCCCCCeeee--EEEEEeeee--eeeeeecccceeeecccccccccccceeEE
Confidence            57999999999999999999993   44456677763  444555555  788999999999999999999999999999


Q ss_pred             EEeCCChhh----------HHHHHHHHHHHH-hhcCCCCcEEEEEeCCCCCCC----------------cccCHHHHHHH
Q 028792           87 VYDVTDQES----------FNNVKQWLNEID-RYASENVNKLLVGNKCDLTAN----------------KVVSYETAKAF  139 (203)
Q Consensus        87 v~d~~~~~s----------~~~~~~~~~~l~-~~~~~~~p~iiv~nK~D~~~~----------------~~~~~~~~~~~  139 (203)
                      ++|.++..+          +.+...++..+. .....+.|+++++||.|+.+.                .....+.+.++
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~  153 (200)
T d1zcba2          74 LVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKF  153 (200)
T ss_dssp             EEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHH
T ss_pred             EEEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHH
Confidence            999987532          344444444432 233357999999999997421                01222333333


Q ss_pred             HHHc-----------CCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 028792          140 ADEI-----------GIPFMETSAKSATNVEQAFMAMAASIKNR  172 (203)
Q Consensus       140 ~~~~-----------~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~  172 (203)
                      ....           .+.+++|||+++.+|+++|..+.+.+.+.
T Consensus       154 ~~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~~~  197 (200)
T d1zcba2         154 LVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHD  197 (200)
T ss_dssp             HHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHHHH
Confidence            2221           24567899999999999999998887754

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.89  E-value=1.5e-22  Score=139.99  Aligned_cols=148  Identities=22%  Similarity=0.201  Sum_probs=101.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCC-CCCccccceeeEEEEEEECCeEEEEEEEeCCChhhh---------chhhhccc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDSYL-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF---------RTITSSYY   78 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~~~~   78 (203)
                      +||+++|.+|+|||||+|+|++.... ....+..+.......+...+  ..+.+||+||....         .......+
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~   78 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQEI   78 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCC--eeEEeccccccccCCccHHHHHHHHHHHHHH
Confidence            69999999999999999999976543 23333444444455556666  67889999994211         01122235


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCH
Q 028792           79 RGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNV  158 (203)
Q Consensus        79 ~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  158 (203)
                      ..+|++++|+|++++........+.     .. ...++++++||.|+.+..  ..++..+.. ..+.+++++||++|+|+
T Consensus        79 ~~ad~ii~v~d~~~~~~~~~~~~~~-----~~-~~~~~i~~~~k~d~~~~~--~~~~~~~~~-~~~~~~~~vSA~~g~gi  149 (160)
T d1xzpa2          79 EKADIVLFVLDASSPLDEEDRKILE-----RI-KNKRYLVVINKVDVVEKI--NEEEIKNKL-GTDRHMVKISALKGEGL  149 (160)
T ss_dssp             HHCSEEEEEEETTSCCCHHHHHHHH-----HH-TTSSEEEEEEECSSCCCC--CHHHHHHHH-TCSTTEEEEEGGGTCCH
T ss_pred             HhCCEEEEEEeCCCCcchhhhhhhh-----hc-ccccceeeeeeccccchh--hhHHHHHHh-CCCCcEEEEECCCCCCH
Confidence            7899999999999877643322221     11 246889999999987642  333333222 23578999999999999


Q ss_pred             HHHHHHHHH
Q 028792          159 EQAFMAMAA  167 (203)
Q Consensus       159 ~~~~~~l~~  167 (203)
                      ++++++|.+
T Consensus       150 ~~L~~~I~k  158 (160)
T d1xzpa2         150 EKLEESIYR  158 (160)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999999865

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.86  E-value=4.8e-22  Score=145.01  Aligned_cols=161  Identities=16%  Similarity=0.130  Sum_probs=102.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEE----------------EEECCeEEEEEEEeCCChhhhchh
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRT----------------VEQDGKTIKLQIWDTAGQERFRTI   73 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~i~D~~g~~~~~~~   73 (203)
                      .|+|+|.+++|||||+++|++...........+.......                ..+......+.++||||+..|...
T Consensus         7 ~IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~~   86 (227)
T d1g7sa4           7 IVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTL   86 (227)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTS
T ss_pred             EEEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceeccccc
Confidence            3999999999999999999864321111111111000110                111223357889999999988888


Q ss_pred             hhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCH--------------------
Q 028792           74 TSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSY--------------------  133 (203)
Q Consensus        74 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~--------------------  133 (203)
                      ....+..+|++|+|+|+.+.-.... ...+..+..   .+.|+++++||+|+........                    
T Consensus        87 ~~~~~~~~D~~ilVvda~~g~~~~~-~~~~~~~~~---~~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  162 (227)
T d1g7sa4          87 RKRGGALADLAILIVDINEGFKPQT-QEALNILRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLD  162 (227)
T ss_dssp             BCSSSBSCSEEEEEEETTTCCCHHH-HHHHHHHHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHH
T ss_pred             chhcccccceEEEEEecccCcccch-hHHHHHhhc---CCCeEEEEEECccCCCchhhhhhHHHHHhhhcchHHHHHHHH
Confidence            8788899999999999986433222 222233332   3689999999999865432110                    


Q ss_pred             HHHHH----HHHH--------------cCCCEEEEecCCCCCHHHHHHHHHHHHHHHhc
Q 028792          134 ETAKA----FADE--------------IGIPFMETSAKSATNVEQAFMAMAASIKNRMA  174 (203)
Q Consensus       134 ~~~~~----~~~~--------------~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~  174 (203)
                      ....+    +...              ..++++++||++|.|++++++.|.....+...
T Consensus       163 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~~~~~  221 (227)
T d1g7sa4         163 TKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYLR  221 (227)
T ss_dssp             HHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHHHHHH
Confidence            01111    1111              01468999999999999999999887766544

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.86  E-value=4.6e-21  Score=136.64  Aligned_cols=157  Identities=16%  Similarity=0.144  Sum_probs=93.5

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhh----------h---c
Q 028792            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER----------F---R   71 (203)
Q Consensus         5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~---~   71 (203)
                      .+...+|+|+|.+|||||||+|+|++...........+.+..........   .+.+.|+++...          .   .
T Consensus        20 ~~~~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~d~~~~~~~~~~~~~~~~~~~~~   96 (195)
T d1svia_          20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMI   96 (195)
T ss_dssp             CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeecccccccc---cceEEEEEeeccccccccccchhhhHH
Confidence            44456899999999999999999997653222112222112222222222   244566665211          1   1


Q ss_pred             hhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH----cCCCE
Q 028792           72 TITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADE----IGIPF  147 (203)
Q Consensus        72 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~----~~~~~  147 (203)
                      ......+..+|++++++|++.+..- ...++++.+..   .+.|+++|+||+|+.+..... +....+.+.    ...++
T Consensus        97 ~~~~~~~~~~~~vi~viD~~~~~~~-~~~~~~~~l~~---~~~piivv~NK~D~~~~~~~~-~~~~~~~~~l~~~~~~~~  171 (195)
T d1svia_          97 ETYITTREELKAVVQIVDLRHAPSN-DDVQMYEFLKY---YGIPVIVIATKADKIPKGKWD-KHAKVVRQTLNIDPEDEL  171 (195)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHHH---TTCCEEEEEECGGGSCGGGHH-HHHHHHHHHHTCCTTSEE
T ss_pred             hhhhccccchhhhhhhhhccccccc-ccccccccccc---ccCcceechhhccccCHHHHH-HHHHHHHHHhcccCCCCE
Confidence            1122345668999999999865431 22334444433   368999999999986543322 222222222    23579


Q ss_pred             EEEecCCCCCHHHHHHHHHHHH
Q 028792          148 METSAKSATNVEQAFMAMAASI  169 (203)
Q Consensus       148 ~~~Sa~~~~gi~~~~~~l~~~~  169 (203)
                      +++||++|.|+++++++|.+.+
T Consensus       172 ~~~SA~~~~gi~el~~~i~~~l  193 (195)
T d1svia_         172 ILFSSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEEeCCCCCCHHHHHHHHHHHh
Confidence            9999999999999999998876

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=9.8e-21  Score=136.11  Aligned_cols=117  Identities=21%  Similarity=0.348  Sum_probs=85.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhc-hhhhccccCCcEEEEEE
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR-TITSSYYRGAHGIIVVY   88 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-~~~~~~~~~~d~~i~v~   88 (203)
                      +|+|+|++|||||||+++|.++.+.... ++.+.......+. ++..+.+.+||++|+..+. ..+..++..++++++|+
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~~-~t~~~~~~~~~~~-~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~   79 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSSAIYKVN-NNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVV   79 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCBC-CCCSCEEEEEECS-STTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCccc-CCeeEEEEEEEEe-eeeeeeeeeeeccccccccchhhhhhhhhccccceEE
Confidence            6999999999999999999988776553 4555444433332 3445789999999988774 46677889999999999


Q ss_pred             eCCChhhH-HHHHHHHHH-HHhh--cCCCCcEEEEEeCCCCCCC
Q 028792           89 DVTDQESF-NNVKQWLNE-IDRY--ASENVNKLLVGNKCDLTAN  128 (203)
Q Consensus        89 d~~~~~s~-~~~~~~~~~-l~~~--~~~~~p~iiv~nK~D~~~~  128 (203)
                      |+++..++ .+...++.. +...  .....|++|++||+|+...
T Consensus        80 D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a  123 (207)
T d2fh5b1          80 DSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMA  123 (207)
T ss_dssp             ETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTC
T ss_pred             EcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCC
Confidence            99987653 444444333 3222  2346899999999999754

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.86  E-value=5.9e-22  Score=140.15  Aligned_cols=157  Identities=18%  Similarity=0.173  Sum_probs=99.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchh-------hhccccCC
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI-------TSSYYRGA   81 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-------~~~~~~~~   81 (203)
                      -+|+|+|.+|||||||+|+|.+........+..+...........+. ..+.+||+||..+....       ....+..+
T Consensus         2 ~~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~~~-~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~   80 (185)
T d1lnza2           2 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHIERT   80 (185)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred             CeEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEecCC-cEEEEecCCCcccCchHHHHHHHHHHHHHHHh
Confidence            36999999999999999999976654333333333333333333221 35789999996332111       11224568


Q ss_pred             cEEEEEEeCCChhhHHHH--HHHHHHH---HhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHc--CCCEEEEecCC
Q 028792           82 HGIIVVYDVTDQESFNNV--KQWLNEI---DRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEI--GIPFMETSAKS  154 (203)
Q Consensus        82 d~~i~v~d~~~~~s~~~~--~~~~~~l---~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~  154 (203)
                      +.++++++....+.....  ..+....   ......++|+++|+||+|+.+..    +....+.+..  +.+++.+||++
T Consensus        81 ~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~----~~~~~~~~~~~~~~~v~~iSA~~  156 (185)
T d1lnza2          81 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA----ENLEAFKEKLTDDYPVFPISAVT  156 (185)
T ss_dssp             CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH----HHHHHHHHHCCSCCCBCCCSSCC
T ss_pred             hhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHH----HHHHHHHHHhccCCcEEEEECCC
Confidence            889888887654322211  1111111   11222468999999999986532    2233344443  57899999999


Q ss_pred             CCCHHHHHHHHHHHHH
Q 028792          155 ATNVEQAFMAMAASIK  170 (203)
Q Consensus       155 ~~gi~~~~~~l~~~~~  170 (203)
                      |+|+++++++|.+.+.
T Consensus       157 g~Gi~~L~~~i~~~L~  172 (185)
T d1lnza2         157 REGLRELLFEVANQLE  172 (185)
T ss_dssp             SSTTHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHhhh
Confidence            9999999999988774

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.85  E-value=1.4e-20  Score=134.06  Aligned_cols=161  Identities=17%  Similarity=0.204  Sum_probs=105.5

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCC---Cccccce--eeEEEEEE-------------------ECCeEEEEEEE
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFADDSYLES---YISTIGV--DFKIRTVE-------------------QDGKTIKLQIW   62 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~---~~~~~~~--~~~~~~~~-------------------~~~~~~~~~i~   62 (203)
                      ..++|+++|..++|||||+++|++......   .....+.  .+......                   .......+.++
T Consensus         4 ~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   83 (195)
T d1kk1a3           4 AEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFI   83 (195)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEE
T ss_pred             CcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEeee
Confidence            457999999999999999999986432211   1111111  11111111                   01123568999


Q ss_pred             eCCChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc--CHHHHHHHH
Q 028792           63 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVV--SYETAKAFA  140 (203)
Q Consensus        63 D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~--~~~~~~~~~  140 (203)
                      |+||+..|.......+..+|++++|+|+.+........+.+..+....  ..++++++||+|+.+....  ..+.+.++.
T Consensus        84 DtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~~--~~~iiv~inK~D~~d~~~~~~~~~~~~~~~  161 (195)
T d1kk1a3          84 DAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIG--QKNIIIAQNKIELVDKEKALENYRQIKEFI  161 (195)
T ss_dssp             ECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHHHH
T ss_pred             ccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHhc--CccceeeeecccchhhHHHHHHHHHHHHHh
Confidence            999999998888888899999999999987532223334444344332  2467888999998764322  122333444


Q ss_pred             HHc---CCCEEEEecCCCCCHHHHHHHHHHHH
Q 028792          141 DEI---GIPFMETSAKSATNVEQAFMAMAASI  169 (203)
Q Consensus       141 ~~~---~~~~~~~Sa~~~~gi~~~~~~l~~~~  169 (203)
                      ...   .++++++||++|+|++++++.+.+.+
T Consensus       162 ~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~i  193 (195)
T d1kk1a3         162 EGTVAENAPIIPISALHGANIDVLVKAIEDFI  193 (195)
T ss_dssp             TTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             ccccCCCCeEEEEECCCCCCHHHHHHHHHHHC
Confidence            333   36899999999999999999887643

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.85  E-value=2e-21  Score=141.16  Aligned_cols=159  Identities=21%  Similarity=0.202  Sum_probs=114.4

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      .+.+||+++|..|||||||+++|..+.+    .||.+  +....+.+++  +.+.+||++|+..+...|..++..+++++
T Consensus         4 k~~~KilllG~~~vGKTsll~~~~~~~~----~pTiG--~~~~~~~~~~--~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii   75 (221)
T d1azta2           4 RATHRLLLLGAGESGKSTIVKQMRILHV----VLTSG--IFETKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAII   75 (221)
T ss_dssp             HHSEEEEEECSTTSSHHHHHHHHHHHHC----CCCCS--CEEEEEEETT--EEEEEEECCCSTTTTTGGGGGCTTCSEEE
T ss_pred             hhcCEEEEECCCCCCHHHHHHHHhcCCc----CCCCC--eEEEEEEECc--EEEEEEecCccceeccchhhhcccccceE
Confidence            4578999999999999999999975443    35555  4445566666  78999999999999999999999999999


Q ss_pred             EEEeCCChh----------hHHHHHH-HHHHHHhhcCCCCcEEEEEeCCCCCCCcc----c-------------------
Q 028792           86 VVYDVTDQE----------SFNNVKQ-WLNEIDRYASENVNKLLVGNKCDLTANKV----V-------------------  131 (203)
Q Consensus        86 ~v~d~~~~~----------s~~~~~~-~~~~l~~~~~~~~p~iiv~nK~D~~~~~~----~-------------------  131 (203)
                      +++|.++.+          .+.+... |...+......+.|++|++||+|+.+...    .                   
T Consensus        76 ~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~~~  155 (221)
T d1azta2          76 FVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDAT  155 (221)
T ss_dssp             EEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTTCC
T ss_pred             EEEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhhhhccCcccHHHhCccccccCCccccc
Confidence            999998543          2333333 33333333335799999999999853210    0                   


Q ss_pred             -------CHHHHHHHH-----HHc--------CCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 028792          132 -------SYETAKAFA-----DEI--------GIPFMETSAKSATNVEQAFMAMAASIKNR  172 (203)
Q Consensus       132 -------~~~~~~~~~-----~~~--------~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~  172 (203)
                             ..+++..+.     ..+        .+...+|||.++.++..+|..+.+.+.+.
T Consensus       156 ~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v~d~I~~~  216 (221)
T d1azta2         156 PEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRM  216 (221)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHHHHHHHTTHHHHHHH
T ss_pred             ccCCCchhHHHHHHHHHHHHHHHhccCCCCCCceeeeecceeccHHHHHHHHHHHHHHHHH
Confidence                   122222222     111        13356899999999999999998888765

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.82  E-value=2.4e-19  Score=128.60  Aligned_cols=160  Identities=15%  Similarity=0.193  Sum_probs=100.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCC---Cccccc--eeeEEEEEEE------------------------CCeEEE
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFADDSYLES---YISTIG--VDFKIRTVEQ------------------------DGKTIK   58 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~---~~~~~~--~~~~~~~~~~------------------------~~~~~~   58 (203)
                      .++|+++|..++|||||+++|++......   ......  .......+..                        ......
T Consensus         8 ~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~   87 (205)
T d2qn6a3           8 EVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRR   87 (205)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEE
T ss_pred             CeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccceEE
Confidence            37999999999999999999986322110   000000  0000000000                        111246


Q ss_pred             EEEEeCCChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccC--HHHH
Q 028792           59 LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVS--YETA  136 (203)
Q Consensus        59 ~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~  136 (203)
                      +.++|+||+..|.......+..+|++|+|+|+.+.-.-...++.+..+....  -.|+++++||+|+.+.....  ....
T Consensus        88 ~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~~--i~~iIV~vNK~Dl~~~~~~~~~~~~~  165 (205)
T d2qn6a3          88 ISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEEALSQYRQI  165 (205)
T ss_dssp             EEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTT--CCCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred             EEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHHcC--CceeeeccccCCCccchHHHHHHHHH
Confidence            8999999999998877778889999999999987521122233333333322  25888899999997643221  1122


Q ss_pred             HHHHHHc---CCCEEEEecCCCCCHHHHHHHHHHHH
Q 028792          137 KAFADEI---GIPFMETSAKSATNVEQAFMAMAASI  169 (203)
Q Consensus       137 ~~~~~~~---~~~~~~~Sa~~~~gi~~~~~~l~~~~  169 (203)
                      ..+....   +++++++||++|.|++++++.|.+.+
T Consensus       166 ~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~i  201 (205)
T d2qn6a3         166 KQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYI  201 (205)
T ss_dssp             HHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhC
Confidence            2222222   37899999999999999999887653

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.81  E-value=1e-19  Score=129.24  Aligned_cols=155  Identities=16%  Similarity=0.130  Sum_probs=103.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcC----------------CCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhc
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFADD----------------SYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR   71 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~   71 (203)
                      .++|+++|..++|||||+++|+..                ....+....++.+.....+...+  ..+.++|+||+..|.
T Consensus         3 ~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~--~~~~~iDtPGh~~f~   80 (196)
T d1d2ea3           3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAA--RHYAHTDCPGHADYV   80 (196)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSS--CEEEEEECSSHHHHH
T ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEece--eeEEeecCcchHHHH
Confidence            479999999999999999999741                11122223333333334444444  678899999999998


Q ss_pred             hhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccC---HHHHHHHHHHcC----
Q 028792           72 TITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVS---YETAKAFADEIG----  144 (203)
Q Consensus        72 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~---~~~~~~~~~~~~----  144 (203)
                      ......+..+|++++|+|+.+... ...++.+..+....  ..|+|+++||+|+.......   ..++..+....+    
T Consensus        81 ~~~~~~~~~aD~allVVda~~G~~-~QT~~~~~~a~~~~--~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~  157 (196)
T d1d2ea3          81 KNMITGTAPLDGCILVVAANDGPM-PQTREHLLLARQIG--VEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGE  157 (196)
T ss_dssp             HHHHHTSSCCSEEEEEEETTTCSC-HHHHHHHHHHHHTT--CCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred             HHHHHHHhhcCeEEEEEEcCCCCc-hhHHHHHHHHHHhc--CCcEEEEEecccccccHHHHHHHHHHHHHHHHHhCCCcc
Confidence            888888899999999999987432 12233333333322  35788899999987543221   123444444443    


Q ss_pred             -CCEEEEecCCC----------CCHHHHHHHHHH
Q 028792          145 -IPFMETSAKSA----------TNVEQAFMAMAA  167 (203)
Q Consensus       145 -~~~~~~Sa~~~----------~gi~~~~~~l~~  167 (203)
                       ++++++||++|          .++.++++.|.+
T Consensus       158 ~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~  191 (196)
T d1d2ea3         158 ETPIIVGSALCALEQRDPELGLKSVQKLLDAVDT  191 (196)
T ss_dssp             TSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHH
T ss_pred             cCEEEEEEccccccccCcccccCCHHHHHHHHHh
Confidence             67999999988          477777776654

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=2.9e-19  Score=125.29  Aligned_cols=157  Identities=18%  Similarity=0.144  Sum_probs=100.9

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCc-cccceeeEEEEEEECCeEEEEEEEeCCChhhh---------chhhh
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYI-STIGVDFKIRTVEQDGKTIKLQIWDTAGQERF---------RTITS   75 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~   75 (203)
                      .|--.|+|+|.+|||||||+|+|++........ ++............+.  ..+..+|++|....         .....
T Consensus         3 ~~~~~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (179)
T d1egaa1           3 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAAS   80 (179)
T ss_dssp             CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTT
T ss_pred             ccccEEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCC--ceeEeecCCCceecchhhhhhhhhhccc
Confidence            355579999999999999999999876543222 2222222223333344  45667888874321         11223


Q ss_pred             ccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC-CCEEEEecCC
Q 028792           76 SYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIG-IPFMETSAKS  154 (203)
Q Consensus        76 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~  154 (203)
                      .....+++++++.|..+....  ...+...+.   ....|.++++||.|+.............+...++ .+++++||++
T Consensus        81 ~~~~~~~~~l~~~d~~~~~~~--~~~~~~~l~---~~~~~~i~v~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~  155 (179)
T d1egaa1          81 SSIGDVELVIFVVEGTRWTPD--DEMVLNKLR---EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAET  155 (179)
T ss_dssp             SCCCCEEEEEEEEETTCCCHH--HHHHHHHHH---SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred             cchhhcceeEEEEecCccchh--HHHHHHHhh---hccCceeeeeeeeeccchhhhhhhHhhhhhhhcCCCCEEEEeCcC
Confidence            345678899999998764321  122222222   3357889999999987654433344455555555 5899999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 028792          155 ATNVEQAFMAMAASI  169 (203)
Q Consensus       155 ~~gi~~~~~~l~~~~  169 (203)
                      |+|+++++++|.+.+
T Consensus       156 g~gi~~L~~~i~~~l  170 (179)
T d1egaa1         156 GLNVDTIAAIVRKHL  170 (179)
T ss_dssp             TTTHHHHHHHHHTTC
T ss_pred             CCCHHHHHHHHHHhC
Confidence            999999999987754

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.78  E-value=3e-18  Score=123.76  Aligned_cols=151  Identities=22%  Similarity=0.240  Sum_probs=99.1

Q ss_pred             CCCceeeEEEEEcCCCCcHHHHHHHHhcC--CCC-------------------------------CCCccccceeeEEEE
Q 028792            3 NEYDYLFKLLLIGDSGVGKSCLLLRFADD--SYL-------------------------------ESYISTIGVDFKIRT   49 (203)
Q Consensus         3 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~--~~~-------------------------------~~~~~~~~~~~~~~~   49 (203)
                      .+....++|+++|..++|||||+.+|+..  ...                               .......+.......
T Consensus         4 ~~~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~   83 (222)
T d1zunb3           4 HERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRY   83 (222)
T ss_dssp             TTSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEE
T ss_pred             cccCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEE
Confidence            45678899999999999999999999631  110                               011112222333333


Q ss_pred             EEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCC-cEEEEEeCCCCCCC
Q 028792           50 VEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENV-NKLLVGNKCDLTAN  128 (203)
Q Consensus        50 ~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~-p~iiv~nK~D~~~~  128 (203)
                      +...+  ..+.++|+||+..|.......+..+|++|+|+|+.+...-. ..+.+..+...   ++ .+++++||+|+.+.
T Consensus        84 ~~~~~--~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Q-t~e~~~~~~~~---gv~~iiv~vNK~D~~~~  157 (222)
T d1zunb3          84 FSTAK--RKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQ-TRRHSYIASLL---GIKHIVVAINKMDLNGF  157 (222)
T ss_dssp             EECSS--EEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHH-HHHHHHHHHHT---TCCEEEEEEECTTTTTS
T ss_pred             Eeccc--eEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccc-hHHHHHHHHHc---CCCEEEEEEEccccccc
Confidence            44444  67899999999999888888889999999999998643221 12222222222   44 47888999999765


Q ss_pred             cccCHH----HHHHHHHHcC-----CCEEEEecCCCCCHH
Q 028792          129 KVVSYE----TAKAFADEIG-----IPFMETSAKSATNVE  159 (203)
Q Consensus       129 ~~~~~~----~~~~~~~~~~-----~~~~~~Sa~~~~gi~  159 (203)
                      .+...+    ++..+.+..+     ++++++||.+|+|+.
T Consensus       158 ~~~~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~  197 (222)
T d1zunb3         158 DERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVV  197 (222)
T ss_dssp             CHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTS
T ss_pred             cceehhhhHHHHhhhhHhhccCCCceEEEEEEcccCccCC
Confidence            432222    3344555543     468999999999884

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.77  E-value=9.8e-19  Score=125.04  Aligned_cols=141  Identities=15%  Similarity=0.120  Sum_probs=93.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcC------C-----------CCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhh
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFADD------S-----------YLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF   70 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~~------~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~   70 (203)
                      .++|+++|.+++|||||+++|+..      .           .+.+....++.+.....+.+++  .+++++|+||+..|
T Consensus         3 ~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~--~~i~iiDtPGh~df   80 (204)
T d2c78a3           3 HVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAK--RHYSHVDCPGHADY   80 (204)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSS--CEEEEEECCCSGGG
T ss_pred             CeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCC--eEEEEEeCCCchhh
Confidence            489999999999999999999631      0           0111112334444555666666  67889999999999


Q ss_pred             chhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCcccC---HHHHHHHHHHcC--
Q 028792           71 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVN-KLLVGNKCDLTANKVVS---YETAKAFADEIG--  144 (203)
Q Consensus        71 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~iiv~nK~D~~~~~~~~---~~~~~~~~~~~~--  144 (203)
                      .......+..+|++|+|+|+.+.-.... ...+..+...   +.| +++++||+|+.+.....   .+++..+....+  
T Consensus        81 ~~~~~~~~~~aD~avlVvda~~Gv~~qt-~~~~~~~~~~---gi~~iiv~iNK~D~~~~~~~~~~~~~~i~~~l~~~~~~  156 (204)
T d2c78a3          81 IKNMITGAAQMDGAILVVSAADGPMPQT-REHILLARQV---GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFP  156 (204)
T ss_dssp             HHHHHHHHTTCSSEEEEEETTTCCCHHH-HHHHHHHHHT---TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHCCEEEEEEECCCCCcHHH-HHHHHHHHHc---CCCeEEEEEEecccCCCHHHHHHHHHHHHHHHHhcCCC
Confidence            8888888999999999999987544322 2222223222   555 67789999986543211   123334444332  


Q ss_pred             ---CCEEEEecCC
Q 028792          145 ---IPFMETSAKS  154 (203)
Q Consensus       145 ---~~~~~~Sa~~  154 (203)
                         +++++.|+..
T Consensus       157 ~~~i~~i~~sa~~  169 (204)
T d2c78a3         157 GDEVPVIRGSALL  169 (204)
T ss_dssp             TTTSCEEECCHHH
T ss_pred             cccceeeeeechh
Confidence               5688888753

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.76  E-value=2.3e-17  Score=122.17  Aligned_cols=116  Identities=19%  Similarity=0.212  Sum_probs=83.8

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhc--CCC----------------CCCCccccceeeEEEEEEECCeEEEEEEEeCCChh
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFAD--DSY----------------LESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE   68 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~--~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~   68 (203)
                      +.-+|+++|+.++|||||+.+|+.  +..                +.+.....+.......+.+++  .+++++||||+.
T Consensus         5 ~iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~--~~~n~iDtPG~~   82 (276)
T d2bv3a2           5 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD--HRINIIDAPGHV   82 (276)
T ss_dssp             GEEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETT--EEEEEECCCSSS
T ss_pred             hceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCC--eEEEEecCCchh
Confidence            334799999999999999999962  111                112223344455556677777  788999999999


Q ss_pred             hhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 028792           69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN  128 (203)
Q Consensus        69 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~  128 (203)
                      .|.......+..+|++|+|+|+.+.-.......| +..   ...+.|.++++||+|....
T Consensus        83 dF~~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w-~~a---~~~~lP~i~fINKmDr~~a  138 (276)
T d2bv3a2          83 DFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVW-RQA---EKYKVPRIAFANKMDKTGA  138 (276)
T ss_dssp             SCSTTHHHHHHHCCEEEEEEETTTSSCHHHHHHH-HHH---HTTTCCEEEEEECTTSTTC
T ss_pred             hhHHHHHHHHHhhhheEEeccccCCcchhHHHHH-HHH---HHcCCCEEEEEeccccccc
Confidence            9999999999999999999999875443222333 223   3347999999999998643

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=3.4e-18  Score=120.32  Aligned_cols=161  Identities=16%  Similarity=0.112  Sum_probs=85.4

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCC-hhh-------hc---h
Q 028792            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG-QER-------FR---T   72 (203)
Q Consensus         4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g-~~~-------~~---~   72 (203)
                      +.+..++|+++|.+|||||||+|+|.+...........+.......+..... ......+.++ ...       ..   .
T Consensus        12 p~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (188)
T d1puia_          12 PSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADG-KRLVDLPGYGYAEVPEEMKRKWQRALG   90 (188)
T ss_dssp             SCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETT-EEEEECCCCC------CCHHHHHHHHH
T ss_pred             CCccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccc-cceeeeecccccchhhhhhhhhhhhhh
Confidence            5677899999999999999999999987654332222222222222222222 2222222222 111       01   1


Q ss_pred             hhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccC--HHHHHHHHHHc--CCCEE
Q 028792           73 ITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVS--YETAKAFADEI--GIPFM  148 (203)
Q Consensus        73 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~--~~~~~  148 (203)
                      .........+.++.+.+........ ...++..+.   ....++++++||+|+.......  .+...+.....  ..+++
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~~~~i  166 (188)
T d1puia_          91 EYLEKRQSLQGLVVLMDIRHPLKDL-DQQMIEWAV---DSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVE  166 (188)
T ss_dssp             HHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHH---HTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEE
T ss_pred             hhhhhhhheeEEEEeecccccchhH-HHHHHHHhh---hccccccchhhhhhccCHHHHHHHHHHHHHHHHhhCCCCcEE
Confidence            1112234455666667666543322 122322232   2357889999999987543221  12222222222  25789


Q ss_pred             EEecCCCCCHHHHHHHHHHHH
Q 028792          149 ETSAKSATNVEQAFMAMAASI  169 (203)
Q Consensus       149 ~~Sa~~~~gi~~~~~~l~~~~  169 (203)
                      ++||++|.|++++++.|.+.+
T Consensus       167 ~vSA~~g~Gid~L~~~i~~~~  187 (188)
T d1puia_         167 TFSSLKKQGVDKLRQKLDTWF  187 (188)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHH
T ss_pred             EEeCCCCCCHHHHHHHHHHHh
Confidence            999999999999999987654

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.75  E-value=1.6e-18  Score=124.35  Aligned_cols=116  Identities=22%  Similarity=0.336  Sum_probs=82.1

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhcc----ccCCc
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSY----YRGAH   82 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~----~~~~d   82 (203)
                      |..+|+|+|++|||||||+|+|.+.++.+    +++.......+..++  ..+.+||+||+..+...+...    ...++
T Consensus         2 ~~p~V~lvG~~n~GKTSLln~l~~~~~~~----~tt~~~~~~~~~~~~--~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~   75 (209)
T d1nrjb_           2 YQPSIIIAGPQNSGKTSLLTLLTTDSVRP----TVVSQEPLSAADYDG--SGVTLVDFPGHVKLRYKLSDYLKTRAKFVK   75 (209)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSSCCC----BCCCSSCEEETTGGG--SSCEEEECCCCGGGTHHHHHHHHHHGGGEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCC----eEEecceEEEEEeCC--eEEEEEecccccchhhHHHHHHHHHhhhcc
Confidence            56799999999999999999999877543    233333333444444  567899999988765554443    45568


Q ss_pred             EEEEEEeCCC-hhhHHHHHHHHH----HHHhhcCCCCcEEEEEeCCCCCCC
Q 028792           83 GIIVVYDVTD-QESFNNVKQWLN----EIDRYASENVNKLLVGNKCDLTAN  128 (203)
Q Consensus        83 ~~i~v~d~~~-~~s~~~~~~~~~----~l~~~~~~~~p~iiv~nK~D~~~~  128 (203)
                      .+++++|+.+ ..++.....|+.    .+......+.|+++|+||+|+...
T Consensus        76 ~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~  126 (209)
T d1nrjb_          76 GLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA  126 (209)
T ss_dssp             EEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred             ccceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeeccccc
Confidence            9999999774 555555555443    334445568999999999998754

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.71  E-value=9.5e-17  Score=118.51  Aligned_cols=112  Identities=16%  Similarity=0.226  Sum_probs=81.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCC--CCC----------------CCccccceeeEEEEEEECCeEEEEEEEeCCChhhh
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDS--YLE----------------SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF   70 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~--~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~   70 (203)
                      =+|+|+|+.++|||||+.+|+...  ...                +.....+.......+.+++  .+++++||||+..|
T Consensus         3 RNv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~--~~~n~iDtPGh~dF   80 (267)
T d2dy1a2           3 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRG--HRVFLLDAPGYGDF   80 (267)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETT--EEEEEEECCCSGGG
T ss_pred             eEEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccc--cceeEEccCchhhh
Confidence            369999999999999999996211  100                0112234445555667777  67899999999999


Q ss_pred             chhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 028792           71 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLT  126 (203)
Q Consensus        71 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~  126 (203)
                      .......+..+|++++|+|+.+.-.......| ..+..   .+.|.++++||+|..
T Consensus        81 ~~e~~~al~~~D~avlvvda~~Gv~~~t~~~~-~~~~~---~~~p~~i~iNk~D~~  132 (267)
T d2dy1a2          81 VGEIRGALEAADAALVAVSAEAGVQVGTERAW-TVAER---LGLPRMVVVTKLDKG  132 (267)
T ss_dssp             HHHHHHHHHHCSEEEEEEETTTCSCHHHHHHH-HHHHH---TTCCEEEEEECGGGC
T ss_pred             hhhhhhhhcccCceEEEeeccCCccchhHHHH-Hhhhh---ccccccccccccccc
Confidence            99899999999999999999875443333333 22332   368999999999964

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.70  E-value=8.9e-18  Score=122.59  Aligned_cols=148  Identities=16%  Similarity=0.187  Sum_probs=100.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc--CCC-----------------------------CCCCccccceeeEEEEEEECCeE
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFAD--DSY-----------------------------LESYISTIGVDFKIRTVEQDGKT   56 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~--~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~   56 (203)
                      .++|+++|..++|||||+.+|+.  +..                             ..+....++.+.....+.+.+  
T Consensus         6 ~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~--   83 (239)
T d1f60a3           6 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK--   83 (239)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS--
T ss_pred             ccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccCC--
Confidence            48999999999999999999962  111                             011223444455556666666  


Q ss_pred             EEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChhh---H---HHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCc
Q 028792           57 IKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQES---F---NNVKQWLNEIDRYASENVN-KLLVGNKCDLTANK  129 (203)
Q Consensus        57 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~l~~~~~~~~p-~iiv~nK~D~~~~~  129 (203)
                      .+++++|+||+..|......-+..+|++|+|+|+....-   +   ......+.....+   +.| +|+++||+|+.+..
T Consensus        84 ~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~~---gv~~iiv~iNKmD~~~~d  160 (239)
T d1f60a3          84 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTL---GVRQLIVAVNKMDSVKWD  160 (239)
T ss_dssp             EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHT---TCCEEEEEEECGGGGTTC
T ss_pred             EEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHHc---CCCeEEEEEECCCCCCCC
Confidence            789999999999999888889999999999999985321   0   0122222222222   444 78889999987644


Q ss_pred             ccCH----HHHHHHHHHcC-----CCEEEEecCCCCCHHH
Q 028792          130 VVSY----ETAKAFADEIG-----IPFMETSAKSATNVEQ  160 (203)
Q Consensus       130 ~~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~  160 (203)
                      ....    +++..+....+     ++++++|+..|.|+-+
T Consensus       161 ~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~  200 (239)
T d1f60a3         161 ESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE  200 (239)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCccee
Confidence            3222    23444554443     5789999999998754

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.65  E-value=1.5e-16  Score=115.27  Aligned_cols=149  Identities=21%  Similarity=0.263  Sum_probs=92.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCC--C-----------------------------CCCCccccceeeEEEEEEECCeE
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFADDS--Y-----------------------------LESYISTIGVDFKIRTVEQDGKT   56 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~   56 (203)
                      .++|+++|.-++|||||+.+|+...  .                             ..+.....+.......+..++  
T Consensus         3 ~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~--   80 (224)
T d1jnya3           3 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK--   80 (224)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS--
T ss_pred             ccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCC--
Confidence            5799999999999999999986311  0                             011112222223333344444  


Q ss_pred             EEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChhh---H---HHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc-
Q 028792           57 IKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQES---F---NNVKQWLNEIDRYASENVNKLLVGNKCDLTANK-  129 (203)
Q Consensus        57 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~-  129 (203)
                      ..++++|+||+..|.......+..+|++++|+|+.+...   +   ....+.+......  ...++|+++||+|+.... 
T Consensus        81 ~~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~--~~~~iIv~iNK~D~~~~~~  158 (224)
T d1jnya3          81 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTM--GLDQLIVAVNKMDLTEPPY  158 (224)
T ss_dssp             CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHT--TCTTCEEEEECGGGSSSTT
T ss_pred             ceeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHHh--CCCceEEEEEcccCCCccc
Confidence            779999999999999999899999999999999987421   1   1122222222222  134678889999986422 


Q ss_pred             -ccCH----HHHHHHHHHcC-----CCEEEEecCCCCCHHH
Q 028792          130 -VVSY----ETAKAFADEIG-----IPFMETSAKSATNVEQ  160 (203)
Q Consensus       130 -~~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~  160 (203)
                       ....    .++..+...++     ++++++||..|.|+.+
T Consensus       159 ~~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~  199 (224)
T d1jnya3         159 DEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH  199 (224)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred             cHHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCccc
Confidence             1111    22334444443     5689999999998853

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.65  E-value=6.3e-17  Score=118.54  Aligned_cols=151  Identities=18%  Similarity=0.179  Sum_probs=82.5

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCC--C-----------------------------CCCCccccceeeEEEEEEECCe
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFADDS--Y-----------------------------LESYISTIGVDFKIRTVEQDGK   55 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~~~~~   55 (203)
                      ..++|+++|..++|||||+.+|+...  .                             ........+.......+..++ 
T Consensus        23 ~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~-  101 (245)
T d1r5ba3          23 EHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH-  101 (245)
T ss_dssp             EEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS-
T ss_pred             CceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCcccccccccccccc-
Confidence            35799999999999999999995211  0                             001111122222222333344 


Q ss_pred             EEEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChh---hHH---HHHHHHHHHHhhcCCCC-cEEEEEeCCCCCCC
Q 028792           56 TIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQE---SFN---NVKQWLNEIDRYASENV-NKLLVGNKCDLTAN  128 (203)
Q Consensus        56 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~l~~~~~~~~-p~iiv~nK~D~~~~  128 (203)
                       ..+.++|+||+..|..........+|++++|+|+.+..   ++.   ...+.+..+...   +. ++++++||+|+...
T Consensus       102 -~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~~---~i~~iiv~iNKmD~~~~  177 (245)
T d1r5ba3         102 -RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQ---GINHLVVVINKMDEPSV  177 (245)
T ss_dssp             -EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHT---TCSSEEEEEECTTSTTC
T ss_pred             -ceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHHc---CCCeEEEEEEcCCCCcc
Confidence             67899999999999888888889999999999998632   111   122222222222   34 57888999998643


Q ss_pred             c--ccCHHH----HHHHHHHc-------CCCEEEEecCCCCCHHHHH
Q 028792          129 K--VVSYET----AKAFADEI-------GIPFMETSAKSATNVEQAF  162 (203)
Q Consensus       129 ~--~~~~~~----~~~~~~~~-------~~~~~~~Sa~~~~gi~~~~  162 (203)
                      .  +...++    +..+....       .++++++||++|+|+.+++
T Consensus       178 ~~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~  224 (245)
T d1r5ba3         178 QWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  224 (245)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             chhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccch
Confidence            2  111222    22222222       2579999999999997654

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.58  E-value=1.4e-14  Score=106.73  Aligned_cols=126  Identities=15%  Similarity=0.164  Sum_probs=78.2

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-ccccceeeEEEEEEECCeEEEEEEEeCCChhhhc-------hhhh--
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESY-ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR-------TITS--   75 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~~~--   75 (203)
                      ...++|+++|.+|+|||||+|+|++....... .+..+..........++  ..+.++||||.....       ....  
T Consensus        30 ~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g--~~i~viDTPGl~~~~~~~~~~~~~i~~~  107 (257)
T d1h65a_          30 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSF  107 (257)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEecc--EEEEEEeeecccCCcchHHHHHHHHHHH
Confidence            45699999999999999999999987655332 23333344455556666  678999999953211       1111  


Q ss_pred             ccccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhcCC--CCcEEEEEeCCCCCCCcccCHH
Q 028792           76 SYYRGAHGIIVVYDVTDQE-SFNNVKQWLNEIDRYASE--NVNKLLVGNKCDLTANKVVSYE  134 (203)
Q Consensus        76 ~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~--~~p~iiv~nK~D~~~~~~~~~~  134 (203)
                      ......|+++||++++... +-.+ ...+..+......  -.++++|+||.|...+.....+
T Consensus       108 ~~~~~~~~il~v~~~~~~r~~~~~-~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~~~~~~~e  168 (257)
T d1h65a_         108 LLDKTIDVLLYVDRLDAYRVDNLD-KLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYD  168 (257)
T ss_dssp             TTTCEECEEEEEEESSCCCCCHHH-HHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCHH
T ss_pred             HhcCCCCeEEEEEECCCCCCCHHH-HHHHHHHHHHcchhhhhCEEEEEECcccCCcCCCcHH
Confidence            1224578999999886531 1111 2222222222111  2578999999998776555443

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.55  E-value=2.4e-14  Score=111.76  Aligned_cols=158  Identities=13%  Similarity=0.125  Sum_probs=90.2

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-cc--ccceeeEEEEEEECCeEEEEEEEeCCChhhhchh-----hhccc
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESY-IS--TIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI-----TSSYY   78 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-----~~~~~   78 (203)
                      ..++|+|+|.+|+|||||+|+|.+....... .+  ..+++.....+...+. -.+.+|||||.......     ....+
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~~~~-~~~~l~DtPG~~~~~~~~~~~~~~~~~  133 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNI-PNVVFWDLPGIGSTNFPPDTYLEKMKF  133 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSC-TTEEEEECCCGGGSSCCHHHHHHHTTG
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeeccCC-CeEEEEeCCCcccccccHHHHHHHhhh
Confidence            4589999999999999999999975432211 11  1111111122222221 24779999996533221     22235


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC-------CcccCHH----HH----HHHHHHc
Q 028792           79 RGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTA-------NKVVSYE----TA----KAFADEI  143 (203)
Q Consensus        79 ~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~-------~~~~~~~----~~----~~~~~~~  143 (203)
                      ..+|.++++.|..-.+.   -..+...+..   .++|+++|.||+|...       ......+    .+    ....+..
T Consensus       134 ~~~d~~l~~~~~~~~~~---d~~l~~~l~~---~~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~l~~~  207 (400)
T d1tq4a_         134 YEYDFFIIISATRFKKN---DIDIAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFREN  207 (400)
T ss_dssp             GGCSEEEEEESSCCCHH---HHHHHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred             hcceEEEEecCCCCCHH---HHHHHHHHHH---cCCCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHHHHHHHHc
Confidence            67888888887542221   1223333333   3689999999999531       1111222    12    1222333


Q ss_pred             C---CCEEEEecCC--CCCHHHHHHHHHHHHHH
Q 028792          144 G---IPFMETSAKS--ATNVEQAFMAMAASIKN  171 (203)
Q Consensus       144 ~---~~~~~~Sa~~--~~gi~~~~~~l~~~~~~  171 (203)
                      +   -++|.+|..+  ..|+.++.+.+.+.+.+
T Consensus       208 ~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~~  240 (400)
T d1tq4a_         208 GIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPI  240 (400)
T ss_dssp             TCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred             CCCCCCEEEecCCcccccCHHHHHHHHHHHhHH
Confidence            3   3588888765  45899999888777644

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.49  E-value=7.5e-14  Score=106.11  Aligned_cols=115  Identities=18%  Similarity=0.250  Sum_probs=78.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc--CCC--------------CCCCccccceeeEEEEEEE--------------CCeEE
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFAD--DSY--------------LESYISTIGVDFKIRTVEQ--------------DGKTI   57 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~--~~~--------------~~~~~~~~~~~~~~~~~~~--------------~~~~~   57 (203)
                      .=+|+|+|+.++|||||+.+|+.  +..              ..+.....+.......+.+              ++..+
T Consensus        17 IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~~~   96 (341)
T d1n0ua2          17 VRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSF   96 (341)
T ss_dssp             EEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEE
T ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhccccccce
Confidence            33699999999999999999962  111              1111122222222222222              33567


Q ss_pred             EEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 028792           58 KLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLT  126 (203)
Q Consensus        58 ~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~  126 (203)
                      .++++||||+..|.......+.-+|++++|+|+.+.-.......|....    ..+.|.++++||+|..
T Consensus        97 ~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~~~~a~----~~~~p~i~viNKiDr~  161 (341)
T d1n0ua2          97 LINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL----GERIKPVVVINKVDRA  161 (341)
T ss_dssp             EEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH----HTTCEEEEEEECHHHH
T ss_pred             EEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHHHHHHHH----HcCCCeEEEEECcccc
Confidence            8999999999999999989999999999999999765543333333322    2368999999999953

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.46  E-value=4.5e-14  Score=102.94  Aligned_cols=110  Identities=15%  Similarity=0.039  Sum_probs=65.8

Q ss_pred             EEEEEeCCChhhhchhhhc---c--ccCCcEEEEEEeCC---ChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc
Q 028792           58 KLQIWDTAGQERFRTITSS---Y--YRGAHGIIVVYDVT---DQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANK  129 (203)
Q Consensus        58 ~~~i~D~~g~~~~~~~~~~---~--~~~~d~~i~v~d~~---~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~  129 (203)
                      .+.++|+||+..+......   +  ....+.+++++|+.   ++..+.............  ...|.++++||+|+....
T Consensus        96 ~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~--~~~~~ivvinK~D~~~~~  173 (244)
T d1yrba1          96 DYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLR--LGATTIPALNKVDLLSEE  173 (244)
T ss_dssp             SEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHH--HTSCEEEEECCGGGCCHH
T ss_pred             ceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHH--hCCCceeeeeccccccHH
Confidence            4789999998765332221   1  23456899999975   334332222211111111  257999999999987643


Q ss_pred             ccCHHH--------------------------HHHHHH--HcCCCEEEEecCCCCCHHHHHHHHHHHH
Q 028792          130 VVSYET--------------------------AKAFAD--EIGIPFMETSAKSATNVEQAFMAMAASI  169 (203)
Q Consensus       130 ~~~~~~--------------------------~~~~~~--~~~~~~~~~Sa~~~~gi~~~~~~l~~~~  169 (203)
                      ......                          ......  ...++++++||++|+|+++++..|.+.+
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~~  241 (244)
T d1yrba1         174 EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHY  241 (244)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            211100                          000111  1247899999999999999999987753

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.43  E-value=4.3e-13  Score=101.48  Aligned_cols=105  Identities=10%  Similarity=0.077  Sum_probs=64.0

Q ss_pred             EEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHH
Q 028792           57 IKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETA  136 (203)
Q Consensus        57 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~  136 (203)
                      +.+.+++|.|...-   .......+|..++|..+...+..   +.....+...     +-++|+||+|+.+.........
T Consensus       144 ~d~iiiETVG~gq~---e~~~~~~~D~~v~v~~p~~GD~i---Q~~k~gilE~-----aDi~vvNKaD~~~~~~~~~~~~  212 (323)
T d2qm8a1         144 FDVILVETVGVGQS---ETAVADLTDFFLVLMLPGAGDEL---QGIKKGIFEL-----ADMIAVNKADDGDGERRASAAA  212 (323)
T ss_dssp             CCEEEEEECSSSSC---HHHHHTTSSEEEEEECSCC---------CCTTHHHH-----CSEEEEECCSTTCCHHHHHHHH
T ss_pred             CCeEEEeehhhhhh---hhhhhcccceEEEEeeccchhhh---hhhhhhHhhh-----hheeeEeccccccchHHHHHHH
Confidence            34667777774321   12234569999999998765542   2222222222     3389999999876544333322


Q ss_pred             HHHHHH----------cCCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 028792          137 KAFADE----------IGIPFMETSAKSATNVEQAFMAMAASIKNR  172 (203)
Q Consensus       137 ~~~~~~----------~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~  172 (203)
                      ..+...          +..+++.+||.+|+|+++++++|.+.....
T Consensus       213 ~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~~~  258 (323)
T d2qm8a1         213 SEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRSKL  258 (323)
T ss_dssp             HHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHHHHH
Confidence            222222          346799999999999999999997765543

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.40  E-value=2.6e-12  Score=95.54  Aligned_cols=85  Identities=18%  Similarity=0.132  Sum_probs=56.3

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCe---------------EEEEEEEeCCChh---
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGK---------------TIKLQIWDTAGQE---   68 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~---   68 (203)
                      +.++|.+||.|+||||||+++|++........|.++.+.....+.+.+.               ...+.+.|+||.-   
T Consensus         1 m~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga   80 (278)
T d1jala1           1 MGFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA   80 (278)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCc
Confidence            3589999999999999999999977665544455555555555544332               1358899999942   


Q ss_pred             -hhchhh---hccccCCcEEEEEEeCC
Q 028792           69 -RFRTIT---SSYYRGAHGIIVVYDVT   91 (203)
Q Consensus        69 -~~~~~~---~~~~~~~d~~i~v~d~~   91 (203)
                       .-.++.   ...++.+|++++|+|+.
T Consensus        81 ~~g~Glg~~FL~~ir~~d~LihVVr~f  107 (278)
T d1jala1          81 SKGEGLGNKFLANIRETDAIGHVVRCF  107 (278)
T ss_dssp             HHHGGGTCCHHHHHHTCSEEEEEEECS
T ss_pred             ccCCCccHHHHHHHHhccceEEEeecc
Confidence             222233   34468899999999874

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=99.38  E-value=6.4e-13  Score=100.62  Aligned_cols=86  Identities=14%  Similarity=0.063  Sum_probs=51.4

Q ss_pred             cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccC--HHHHHHHHH-------HcCCCE
Q 028792           77 YYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVS--YETAKAFAD-------EIGIPF  147 (203)
Q Consensus        77 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~-------~~~~~~  147 (203)
                      +...+|.+++|.++...+   +++.....+...     +-++|+||+|........  ..+......       .+..++
T Consensus       164 i~~~aD~~l~v~~P~~Gd---~iq~~k~gi~e~-----aDi~VvNKaD~~~~~~~~~~~~~~~~al~~~~~~~~~w~p~V  235 (327)
T d2p67a1         164 VARMVDCFISLQIAGGGD---DLQGIKKGLMEV-----ADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRV  235 (327)
T ss_dssp             HHTTCSEEEEEECC---------CCCCHHHHHH-----CSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEE
T ss_pred             hhhccceEEEEecCCCch---hhhhhchhhhcc-----ccEEEEEeecccchHHHHHHHHHHHHHhhhcccCCCCCccee
Confidence            456799999998865433   333333333333     238899999986532211  111111111       123579


Q ss_pred             EEEecCCCCCHHHHHHHHHHHHH
Q 028792          148 METSAKSATNVEQAFMAMAASIK  170 (203)
Q Consensus       148 ~~~Sa~~~~gi~~~~~~l~~~~~  170 (203)
                      +.|||.+|+|++++++.|.+...
T Consensus       236 ~~~SA~~g~Gi~eL~~~I~~~~~  258 (327)
T d2p67a1         236 LTCSALEKRGIDEIWHAIIDFKT  258 (327)
T ss_dssp             EECBGGGTBSHHHHHHHHHHHHH
T ss_pred             EEEEeeCCCCHHHHHHHHHHHHH
Confidence            99999999999999999977554

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.30  E-value=3.4e-11  Score=90.17  Aligned_cols=87  Identities=20%  Similarity=0.160  Sum_probs=59.9

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCC-CCCCccccceeeEEEEEEECCe---------------EEEEEEEeCCChhh
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSY-LESYISTIGVDFKIRTVEQDGK---------------TIKLQIWDTAGQER   69 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~   69 (203)
                      ...++|.++|.|+||||||+++|++... .....|.++.+.....+.+.+.               ...+.+.|.||...
T Consensus         8 ~~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~   87 (296)
T d1ni3a1           8 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK   87 (296)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeecccccc
Confidence            3558999999999999999999996543 2333455555555555554432               24688999998432


Q ss_pred             h-------chhhhccccCCcEEEEEEeCCC
Q 028792           70 F-------RTITSSYYRGAHGIIVVYDVTD   92 (203)
Q Consensus        70 ~-------~~~~~~~~~~~d~~i~v~d~~~   92 (203)
                      -       .......++.+|++++|+|+.+
T Consensus        88 gA~~g~GLGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          88 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             ccccccccHHHHHHHhhccceeEEEEeccC
Confidence            1       1233445689999999999854

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.16  E-value=3.9e-11  Score=90.80  Aligned_cols=83  Identities=18%  Similarity=0.117  Sum_probs=45.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEE--E--------------------CCeEEEEEEEeCCC
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVE--Q--------------------DGKTIKLQIWDTAG   66 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~--~--------------------~~~~~~~~i~D~~g   66 (203)
                      ++|+++|.|+||||||+|+|.+.+......|.++.+.......  .                    ......+.++|+||
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG   80 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence            5899999999999999999997665444445444333222111  0                    11236789999999


Q ss_pred             hhhh-------chhhhccccCCcEEEEEEeCC
Q 028792           67 QERF-------RTITSSYYRGAHGIIVVYDVT   91 (203)
Q Consensus        67 ~~~~-------~~~~~~~~~~~d~~i~v~d~~   91 (203)
                      .-..       .......++.+|++++|+|+.
T Consensus        81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~  112 (319)
T d1wxqa1          81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDAT  112 (319)
T ss_dssp             --------------CCCSSTTCSEEEEEEETT
T ss_pred             cccchhcccchHHHHHHhhccceEEEEEeccc
Confidence            4321       112233457899999999986

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.11  E-value=7e-10  Score=82.92  Aligned_cols=118  Identities=16%  Similarity=0.236  Sum_probs=69.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCC-CCCCccccceeeEEEEEEE----------CC----------------------
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFADDSY-LESYISTIGVDFKIRTVEQ----------DG----------------------   54 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~----------~~----------------------   54 (203)
                      ..+|+|+|..++|||||+|+|++..+ +....+++...........          .+                      
T Consensus        26 ~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (299)
T d2akab1          26 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG  105 (299)
T ss_dssp             CCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCS
T ss_pred             CCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhhC
Confidence            46899999999999999999999876 3333333221111111000          00                      


Q ss_pred             -----------------eEEEEEEEeCCChhhh-------------chhhhccccCCc-EEEEEEeCCChhhHHHHHHHH
Q 028792           55 -----------------KTIKLQIWDTAGQERF-------------RTITSSYYRGAH-GIIVVYDVTDQESFNNVKQWL  103 (203)
Q Consensus        55 -----------------~~~~~~i~D~~g~~~~-------------~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~~  103 (203)
                                       ....+.++|+||....             ..+...++...+ ++++|.++....+-.....+.
T Consensus       106 ~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~~  185 (299)
T d2akab1         106 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIA  185 (299)
T ss_dssp             STTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHH
T ss_pred             CCcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHHH
Confidence                             0013789999994321             223444555665 555666666544433333443


Q ss_pred             HHHHhhcCCCCcEEEEEeCCCCCCC
Q 028792          104 NEIDRYASENVNKLLVGNKCDLTAN  128 (203)
Q Consensus       104 ~~l~~~~~~~~p~iiv~nK~D~~~~  128 (203)
                      .   .......++++|+||+|..+.
T Consensus       186 ~---~~~~~~~r~i~Vltk~D~~~~  207 (299)
T d2akab1         186 K---EVDPQGQRTIGVITKLDLMDE  207 (299)
T ss_dssp             H---HHCTTCSSEEEEEECGGGSCT
T ss_pred             H---HhCcCCCceeeEEeccccccc
Confidence            3   334445789999999998765

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.98  E-value=1.7e-09  Score=81.10  Aligned_cols=26  Identities=23%  Similarity=0.511  Sum_probs=23.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCC
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFADDSY   33 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~~~~   33 (203)
                      ..+|+|+|..++|||||+|+|++..+
T Consensus        24 lP~ivVvG~~ssGKSSliNaLlG~~~   49 (306)
T d1jwyb_          24 LPQIVVVGSQSSGKSSVLENIVGRDF   49 (306)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred             CCeEEEEeCCCCCHHHHHHHHhCCCC
Confidence            46899999999999999999998776

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.71  E-value=6.7e-09  Score=76.56  Aligned_cols=59  Identities=27%  Similarity=0.307  Sum_probs=37.3

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCC-CccccceeeEEEEEEECCeEEEEEEEeCCCh
Q 028792            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLES-YISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ   67 (203)
Q Consensus         4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~   67 (203)
                      .....++|+|+|.||||||||+|+|.+...... ..|.++  .....+..+.   .+.++||||.
T Consensus       108 ~~~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~~pG~T--r~~~~i~~~~---~~~l~DTPGi  167 (273)
T d1puja_         108 VKPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGIT--TSQQWVKVGK---ELELLDTPGI  167 (273)
T ss_dssp             CCCCCEEEEEEESTTSSHHHHHHHHHTSCCC--------------CCEEETT---TEEEEECCCC
T ss_pred             CCCCceEEEEEecCccchhhhhhhhhccceEEECCccccc--ccceEEECCC---CeEEecCCCc
Confidence            345679999999999999999999998665332 223333  3333333332   3789999994

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.56  E-value=2e-08  Score=71.19  Aligned_cols=58  Identities=26%  Similarity=0.186  Sum_probs=35.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCC------CCCccccceeeEEEEEEECCeEEEEEEEeCCChhhh
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDSYL------ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF   70 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~   70 (203)
                      ..+++|++|||||||+|+|..+...      ........++.....+..+++.   .++||||...+
T Consensus        97 t~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~gg---~iiDTPG~r~~  160 (225)
T d1u0la2          97 ISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGG---YVVDTPGFANL  160 (225)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSC---EEESSCSSTTC
T ss_pred             eEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECCCc---EEEeCCccccc
Confidence            5689999999999999999864321      1112223333444455554332   48899996543

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.51  E-value=1.4e-06  Score=61.81  Aligned_cols=70  Identities=16%  Similarity=0.238  Sum_probs=39.3

Q ss_pred             CcEEEEEEeCCChhhHHH-HHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC--CCEEEEecCCCCC
Q 028792           81 AHGIIVVYDVTDQESFNN-VKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIG--IPFMETSAKSATN  157 (203)
Q Consensus        81 ~d~~i~v~d~~~~~s~~~-~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~g  157 (203)
                      .+.+|.++|+...+.... ...+..++. ..     =++++||+|+.+.    .+.+++..+..+  +++++++ .-...
T Consensus       122 l~~vi~vVDa~~~~~~~~~~~~~~~Qi~-~A-----D~ivlNK~Dl~~~----~~~~~~~l~~lNP~a~Ii~~~-~g~v~  190 (222)
T d1nija1         122 LDGVIALVDAVHADEQMNQFTIAQSQVG-YA-----DRILLTKTDVAGE----AEKLHERLARINARAPVYTVT-HGDID  190 (222)
T ss_dssp             EEEEEEEEETTTHHHHHHHCHHHHHHHH-TC-----SEEEEECTTTCSC----THHHHHHHHHHCSSSCEEECC-SSCCC
T ss_pred             ccchhhhhhhhhhhhhhhhhHHHHHHHH-hC-----CcccccccccccH----HHHHHHHHHHHhCCCeEEEee-CCccC
Confidence            578899999876543211 111222231 22     1789999998753    234555555555  6777655 22334


Q ss_pred             HHHH
Q 028792          158 VEQA  161 (203)
Q Consensus       158 i~~~  161 (203)
                      ++.+
T Consensus       191 ~~~l  194 (222)
T d1nija1         191 LGLL  194 (222)
T ss_dssp             GGGG
T ss_pred             HHHh
Confidence            4444

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.47  E-value=2.8e-07  Score=65.23  Aligned_cols=86  Identities=20%  Similarity=0.237  Sum_probs=59.3

Q ss_pred             hccccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH--cCCCEEEEe
Q 028792           75 SSYYRGAHGIIVVYDVTDQE-SFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADE--IGIPFMETS  151 (203)
Q Consensus        75 ~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~S  151 (203)
                      +....+.|.+++|+++.+|+ +...+..++-....   .+.+.+||+||+|+.+...  .+...++...  ...+++.+|
T Consensus         5 RP~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~---~~i~pvIvlnK~DL~~~~~--~~~~~~~~~~~~~~~~v~~vS   79 (225)
T d1u0la2           5 KPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK---NELETVMVINKMDLYDEDD--LRKVRELEEIYSGLYPIVKTS   79 (225)
T ss_dssp             TTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHH--HHHHHHHHHHHTTTSCEEECC
T ss_pred             CCCcccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---cCCCEEEEEeCcccCCHHH--HHHHHHhhcccccceeEEEec
Confidence            34568899999999998765 33334444433332   3689999999999975332  2233333333  236899999


Q ss_pred             cCCCCCHHHHHHHH
Q 028792          152 AKSATNVEQAFMAM  165 (203)
Q Consensus       152 a~~~~gi~~~~~~l  165 (203)
                      ++++.|++++..+|
T Consensus        80 a~~~~g~~~L~~~l   93 (225)
T d1u0la2          80 AKTGMGIEELKEYL   93 (225)
T ss_dssp             TTTCTTHHHHHHHH
T ss_pred             cccchhHhhHHHHh
Confidence            99999999998876

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.45  E-value=5.9e-08  Score=71.33  Aligned_cols=117  Identities=16%  Similarity=0.145  Sum_probs=77.0

Q ss_pred             hhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecC
Q 028792           74 TSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAK  153 (203)
Q Consensus        74 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  153 (203)
                      ....+..+|++++|+|+.+|.+..+  ..+   ..... ++|.++|+||+|+.+...  .+...++....+..++.+|+.
T Consensus         9 i~~~i~~~DvIl~V~DaR~P~ss~~--~~l---~~~~~-~Kp~IlVlNK~DLv~~~~--~~~w~~~f~~~~~~~i~isa~   80 (273)
T d1puja_           9 VTEKLKLIDIVYELVDARIPMSSRN--PMI---EDILK-NKPRIMLLNKADKADAAV--TQQWKEHFENQGIRSLSINSV   80 (273)
T ss_dssp             HHHHGGGCSEEEEEEETTSTTTTSC--HHH---HHHCS-SSCEEEEEECGGGSCHHH--HHHHHHHHHTTTCCEEECCTT
T ss_pred             HHHHHHhCCEEEEEEECCCCCCCCC--HHH---HHHHc-CCCeEEEEECccCCchHH--HHHHHHHHHhcCCccceeecc
Confidence            3456789999999999988765321  111   12222 579999999999875422  233444555667889999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHhccCC-CCCCCCCCccccCCCCCCCCC
Q 028792          154 SATNVEQAFMAMAASIKNRMASQP-ASNNARPPTVQIRGQPVNQKS  198 (203)
Q Consensus       154 ~~~gi~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  198 (203)
                      ++.+..++...+.+.+.+...... ........+...-+.|+.+||
T Consensus        81 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~vvG~PNvGKS  126 (273)
T d1puja_          81 NGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKS  126 (273)
T ss_dssp             TCTTGGGHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEESTTSSHH
T ss_pred             cCCCccccchhhhhhhhhhhhhhhhccCCCCceEEEEEecCccchh
Confidence            999999888888777665443322 122334455555666666554

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.40  E-value=3.6e-07  Score=64.26  Aligned_cols=91  Identities=23%  Similarity=0.239  Sum_probs=52.3

Q ss_pred             EEEEEEeCCChhhhchh----hhcc---cc-----CCcEEEEEEeCCCh-hhHHHHHHHHHHHHhhcCCCCcEEEEEeCC
Q 028792           57 IKLQIWDTAGQERFRTI----TSSY---YR-----GAHGIIVVYDVTDQ-ESFNNVKQWLNEIDRYASENVNKLLVGNKC  123 (203)
Q Consensus        57 ~~~~i~D~~g~~~~~~~----~~~~---~~-----~~d~~i~v~d~~~~-~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~  123 (203)
                      ..+.++||+|...+...    ...+   ..     ..+-.++|+|++.. +.+..+...+..+       .+--++++|.
T Consensus        94 ~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~-------~~~~lI~TKl  166 (213)
T d1vmaa2          94 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQAKIFKEAV-------NVTGIILTKL  166 (213)
T ss_dssp             CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHHHHHHHHHHHHHS-------CCCEEEEECG
T ss_pred             CCEEEEeccccccchHHHHHHHHHHHhhhhhccccccceeEEeeccccCcchhhhhhhhcccc-------CCceEEEecc
Confidence            45789999994332211    1111   11     24678999998743 3333333332222       2336789999


Q ss_pred             CCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHH
Q 028792          124 DLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQ  160 (203)
Q Consensus       124 D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  160 (203)
                      |-..    ..=.+.......++|+..++  +|+++++
T Consensus       167 De~~----~~G~~l~~~~~~~~Pi~~i~--~Gq~v~D  197 (213)
T d1vmaa2         167 DGTA----KGGITLAIARELGIPIKFIG--VGEKAED  197 (213)
T ss_dssp             GGCS----CTTHHHHHHHHHCCCEEEEE--CSSSGGG
T ss_pred             cCCC----cccHHHHHHHHHCCCEEEEe--CCCCccc
Confidence            9542    22345666777888988777  4666654

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.37  E-value=5.1e-08  Score=69.30  Aligned_cols=57  Identities=25%  Similarity=0.285  Sum_probs=31.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC------CCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhh
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDSY------LESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF   70 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~   70 (203)
                      ..+++|++|||||||+|+|..+..      .........++.....+..+++    .++||||...+
T Consensus        99 ~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~~~rGrHTTt~~~l~~~~gg----~iiDTPG~r~~  161 (231)
T d1t9ha2          99 TTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGG----LVADTPGFSSL  161 (231)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTE----EEESSCSCSSC
T ss_pred             eEEEECCCCccHHHHHHhhccHhHhhhcccccccCCCceeeeeEEEEecCCC----EEEECCccccc
Confidence            467999999999999999986532      1111111122222233345553    37899997553

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=98.36  E-value=3.4e-07  Score=64.14  Aligned_cols=91  Identities=15%  Similarity=0.160  Sum_probs=53.3

Q ss_pred             EEEEEEeCCChhhhchh----hhcc--------ccCCcEEEEEEeCCC-hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCC
Q 028792           57 IKLQIWDTAGQERFRTI----TSSY--------YRGAHGIIVVYDVTD-QESFNNVKQWLNEIDRYASENVNKLLVGNKC  123 (203)
Q Consensus        57 ~~~~i~D~~g~~~~~~~----~~~~--------~~~~d~~i~v~d~~~-~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~  123 (203)
                      ..+.++||+|...+...    ...+        ....+-.++|+|++. .+....+...+..+      + +--++++|.
T Consensus        89 ~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~------~-~~~lI~TKl  161 (207)
T d1okkd2          89 YDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAV------G-LTGVIVTKL  161 (207)
T ss_dssp             CSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHH------C-CSEEEEECT
T ss_pred             CCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHHHHhhhcc------C-CceEEEecc
Confidence            45789999995433221    1111        124578899999874 44444444444433      1 225689999


Q ss_pred             CCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHH
Q 028792          124 DLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQ  160 (203)
Q Consensus       124 D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  160 (203)
                      |-...    .=.+.......+.|+..++  +|++.++
T Consensus       162 Det~~----~G~~l~~~~~~~~Pi~~i~--~Gq~p~D  192 (207)
T d1okkd2         162 DGTAK----GGVLIPIVRTLKVPIKFVG--VGEGPDD  192 (207)
T ss_dssp             TSSCC----CTTHHHHHHHHCCCEEEEE--CSSSTTC
T ss_pred             CCCCC----ccHHHHHHHHHCCCEEEEe--CCCChHh
Confidence            95432    2224556777788887776  3555543

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=98.34  E-value=2.2e-07  Score=65.23  Aligned_cols=91  Identities=22%  Similarity=0.268  Sum_probs=52.8

Q ss_pred             EEEEEEeCCChhhhch----hhh---cccc-----CCcEEEEEEeCCC-hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCC
Q 028792           57 IKLQIWDTAGQERFRT----ITS---SYYR-----GAHGIIVVYDVTD-QESFNNVKQWLNEIDRYASENVNKLLVGNKC  123 (203)
Q Consensus        57 ~~~~i~D~~g~~~~~~----~~~---~~~~-----~~d~~i~v~d~~~-~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~  123 (203)
                      ..+.++||+|......    ...   ...+     ..+-.++|+|+.. .+....+...+..+       .+--++++|.
T Consensus        92 ~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~-------~~~~lIlTKl  164 (211)
T d2qy9a2          92 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAV-------GLTGITLTKL  164 (211)
T ss_dssp             CSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHHHHHHHHHHHHS-------CCCEEEEECC
T ss_pred             CCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCcchHHHHhhhhhcc-------CCceEEEeec
Confidence            4578999999433221    111   1122     2468899999874 33443333332222       2336789999


Q ss_pred             CCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHH
Q 028792          124 DLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQ  160 (203)
Q Consensus       124 D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  160 (203)
                      |-...    .=.+.......++|+..++  .|+++++
T Consensus       165 De~~~----~G~~l~~~~~~~~Pi~~i~--~Gq~v~D  195 (211)
T d2qy9a2         165 DGTAK----GGVIFSVADQFGIPIRYIG--VGERIED  195 (211)
T ss_dssp             TTCTT----TTHHHHHHHHHCCCEEEEE--CSSSGGG
T ss_pred             CCCCC----ccHHHHHHHHHCCCEEEEe--CCCCccc
Confidence            95432    2335566777888988777  5666644

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.31  E-value=2.1e-06  Score=58.36  Aligned_cols=22  Identities=32%  Similarity=0.807  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      +||+|+|++|+|||||++.+.+
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~   22 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVE   22 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHh
Confidence            5899999999999999999986

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=98.24  E-value=5.3e-07  Score=63.34  Aligned_cols=91  Identities=13%  Similarity=0.149  Sum_probs=53.8

Q ss_pred             EEEEEEeCCChhhhch------hhhcc--ccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028792           57 IKLQIWDTAGQERFRT------ITSSY--YRGAHGIIVVYDVTDQE-SFNNVKQWLNEIDRYASENVNKLLVGNKCDLTA  127 (203)
Q Consensus        57 ~~~~i~D~~g~~~~~~------~~~~~--~~~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~  127 (203)
                      ..+.++||+|...+..      ....+  ....+-+++|+|++... ....+...+.    ..   .+--++++|.|-. 
T Consensus        95 ~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~~~~----~~---~~~~lI~TKlDet-  166 (211)
T d1j8yf2          95 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLASKFNQ----AS---KIGTIIITKMDGT-  166 (211)
T ss_dssp             CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHH----HC---TTEEEEEECTTSC-
T ss_pred             CceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcchHHHHhhhhc----cc---CcceEEEecccCC-
Confidence            4678999999543321      11111  12356789999987543 3333332221    11   1235679999954 


Q ss_pred             CcccCHHHHHHHHHHcCCCEEEEecCCCCCHHH
Q 028792          128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQ  160 (203)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  160 (203)
                         ...=.+.......++|+..++  +|+++++
T Consensus       167 ---~~~G~~l~~~~~~~lPi~~it--~Gq~v~D  194 (211)
T d1j8yf2         167 ---AKGGGALSAVAATGATIKFIG--TGEKIDE  194 (211)
T ss_dssp             ---SCHHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred             ---CcccHHHHHHHHHCcCEEEEe--CCCCccc
Confidence               334556677788889988877  4777654

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.23  E-value=2.8e-07  Score=65.44  Aligned_cols=88  Identities=13%  Similarity=0.174  Sum_probs=61.1

Q ss_pred             hccccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccC--HHHHHHHHHHcCCCEEEEe
Q 028792           75 SSYYRGAHGIIVVYDVTDQE-SFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVS--YETAKAFADEIGIPFMETS  151 (203)
Q Consensus        75 ~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~S  151 (203)
                      +....+.|.+++|+++.+|+ +...+..++-..   ...+.+.+||+||+|+.+.....  .+...+.....+.+++.+|
T Consensus         5 RP~vANiD~~~iV~s~~~P~~~~~~idR~Lv~a---~~~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~S   81 (231)
T d1t9ha2           5 RPPICNVDQAVLVFSAVQPSFSTALLDRFLVLV---EANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTS   81 (231)
T ss_dssp             TTTEECCCEEEEEEESTTTTCCHHHHHHHHHHH---HTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECC
T ss_pred             CCCccccCEEEEEEECCCCCCCHHHHHHHHHHH---HHcCCCEEEEEecccccccHHHHHHHHHHHHHHhhccccceeee
Confidence            44567899999999998765 333344443332   23478889999999997653321  1223344556689999999


Q ss_pred             cCCCCCHHHHHHHH
Q 028792          152 AKSATNVEQAFMAM  165 (203)
Q Consensus       152 a~~~~gi~~~~~~l  165 (203)
                      +.++.|++++..+|
T Consensus        82 a~~~~gl~~L~~~l   95 (231)
T d1t9ha2          82 SKDQDSLADIIPHF   95 (231)
T ss_dssp             HHHHTTCTTTGGGG
T ss_pred             cCChhHHHHHHHhh
Confidence            99999999887764

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=98.07  E-value=1.3e-05  Score=56.01  Aligned_cols=84  Identities=19%  Similarity=0.187  Sum_probs=48.9

Q ss_pred             EEEEEEeCCChhhhchh----hhcc--ccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc
Q 028792           57 IKLQIWDTAGQERFRTI----TSSY--YRGAHGIIVVYDVTDQE-SFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANK  129 (203)
Q Consensus        57 ~~~~i~D~~g~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~  129 (203)
                      ..+.++||+|.......    +..+  ....+-+++|.|++..+ ....+..+++.+    .   .--++++|.|-..  
T Consensus        93 ~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~~~~~f~~~~----~---~~~~I~TKlDe~~--  163 (207)
T d1ls1a2          93 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKV----G---VTGLVLTKLDGDA--  163 (207)
T ss_dssp             CCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHHHHHHT----C---CCEEEEECGGGCS--
T ss_pred             CcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHHHHHHHHHhhC----C---CCeeEEeecCccc--
Confidence            46789999995433221    1112  24567889999987544 333333222212    1   2247899999532  


Q ss_pred             ccCHHHHHHHHHHcCCCEEEEe
Q 028792          130 VVSYETAKAFADEIGIPFMETS  151 (203)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~S  151 (203)
                        ..=.+.......+.|+..++
T Consensus       164 --~~G~~l~~~~~~~~Pi~~i~  183 (207)
T d1ls1a2         164 --RGGAALSARHVTGKPIYFAG  183 (207)
T ss_dssp             --SCHHHHHHHHHHCCCEEEEC
T ss_pred             --cchHHHHHHHHHCCCEEEEe
Confidence              23445666777888887664

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.82  E-value=5.3e-06  Score=55.96  Aligned_cols=26  Identities=23%  Similarity=0.349  Sum_probs=23.4

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhc
Q 028792            5 YDYLFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         5 ~~~~~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      .++.++|+|+|+|||||||+.+.|..
T Consensus         2 ~pk~~~I~i~G~~GsGKTT~~~~La~   27 (174)
T d1y63a_           2 QPKGINILITGTPGTGKTSMAEMIAA   27 (174)
T ss_dssp             CCSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCCEEEEEeCCCCCHHHHHHHHHH
Confidence            46779999999999999999999974

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.82  E-value=4.4e-06  Score=56.83  Aligned_cols=41  Identities=17%  Similarity=0.336  Sum_probs=29.3

Q ss_pred             HHHHHHHcCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccCCCC
Q 028792          136 AKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPAS  179 (203)
Q Consensus       136 ~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~~~~~~  179 (203)
                      ..++.+.++.+++.+..   .++++.+..+.+.+.+.....+..
T Consensus       148 ~~~~l~~~~~~~i~i~~---~~~~e~~~~i~~~I~~ll~~~~~~  188 (192)
T d1lw7a2         148 LKKLLDKYKVPYIEIES---PSYLDRYNQVKAVIEKVLNEEEIS  188 (192)
T ss_dssp             HHHHHHGGGCCCEEEEC---SSHHHHHHHHHHHHHHHTSCCCCS
T ss_pred             HHHHHHHCCCCEEEeCC---CCHHHHHHHHHHHHHHHHCcCcHh
Confidence            44556667788887753   478899999988887766655543

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.75  E-value=6.3e-06  Score=55.43  Aligned_cols=23  Identities=43%  Similarity=0.606  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      .++|+++|+|||||||+.+.|..
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~   26 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999999964

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.68  E-value=1.2e-05  Score=53.90  Aligned_cols=22  Identities=32%  Similarity=0.336  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      .-|+|+|++|||||||+++|..
T Consensus         3 Pvi~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           3 PLLAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            4589999999999999999985

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.67  E-value=1.4e-05  Score=54.97  Aligned_cols=26  Identities=23%  Similarity=0.437  Sum_probs=23.4

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhc
Q 028792            5 YDYLFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         5 ~~~~~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      ..+.++|+|+|+|||||||+...|..
T Consensus         3 ~~r~mrIiliG~PGSGKtT~a~~La~   28 (189)
T d2ak3a1           3 SARLLRAAIMGAPGSGKGTVSSRITK   28 (189)
T ss_dssp             SSCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcceeEEEECCCCCCHHHHHHHHHH
Confidence            45779999999999999999999975

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.66  E-value=1.2e-05  Score=54.62  Aligned_cols=22  Identities=27%  Similarity=0.486  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      ++|+|+|+|||||||+.+.|..
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVA   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999998864

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.64  E-value=1.4e-05  Score=54.81  Aligned_cols=25  Identities=24%  Similarity=0.377  Sum_probs=22.0

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhc
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      ++-++|+++|+|||||||+.+.|..
T Consensus         1 p~~~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           1 PKGVRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHH
Confidence            3568999999999999999999874

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.60  E-value=1.6e-05  Score=52.27  Aligned_cols=20  Identities=40%  Similarity=0.544  Sum_probs=18.4

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q 028792           11 LLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        11 i~i~G~~~~GKSsli~~l~~   30 (203)
                      |++.|+||||||||+++|..
T Consensus         5 Iii~G~pGsGKTTla~~L~~   24 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIA   24 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78899999999999999865

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.60  E-value=1.7e-05  Score=54.06  Aligned_cols=22  Identities=27%  Similarity=0.525  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      ++|+|+|+|||||||+.+.|..
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVE   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999998875

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.59  E-value=1.8e-05  Score=53.86  Aligned_cols=22  Identities=32%  Similarity=0.733  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      ++|+|+|+|||||||+.+.|..
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~   22 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAE   22 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999999874

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.57  E-value=1.7e-05  Score=53.28  Aligned_cols=21  Identities=19%  Similarity=0.450  Sum_probs=18.4

Q ss_pred             EE-EEEcCCCCcHHHHHHHHhc
Q 028792           10 KL-LLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i-~i~G~~~~GKSsli~~l~~   30 (203)
                      || .|+|.+|||||||+++|+.
T Consensus         2 kii~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHH
Confidence            44 5999999999999999974

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.54  E-value=2.2e-05  Score=53.32  Aligned_cols=22  Identities=18%  Similarity=0.385  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      ++|+|+|+|||||||..+.|..
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~   22 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIME   22 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999998863

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=1.4e-05  Score=54.45  Aligned_cols=21  Identities=29%  Similarity=0.567  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 028792           11 LLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        11 i~i~G~~~~GKSsli~~l~~~   31 (203)
                      |+|+||+|+||+||+++|...
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            889999999999999999853

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.49  E-value=2.8e-05  Score=52.88  Aligned_cols=23  Identities=26%  Similarity=0.531  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      .++|+|+|+|||||||+.+.|..
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~   24 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQE   24 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            37899999999999999999964

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.48  E-value=2.3e-05  Score=53.70  Aligned_cols=23  Identities=17%  Similarity=0.247  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      .++|+|+|+|||||||+.+.|..
T Consensus         3 Pm~I~i~GppGsGKsT~a~~La~   25 (189)
T d1zaka1           3 PLKVMISGAPASGKGTQCELIKT   25 (189)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999998864

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.47  E-value=2.9e-05  Score=51.95  Aligned_cols=21  Identities=38%  Similarity=0.561  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028792           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~   30 (203)
                      -|++.|+|||||||+.++|..
T Consensus         4 lI~i~G~~GsGKTTva~~L~~   24 (176)
T d2bdta1           4 LYIITGPAGVGKSTTCKRLAA   24 (176)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            388999999999999999974

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.46  E-value=4e-05  Score=52.66  Aligned_cols=24  Identities=17%  Similarity=0.257  Sum_probs=20.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhc
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      +..-|+|+|+|||||||+.+.|..
T Consensus         5 kp~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           5 KPNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            346789999999999999999864

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.40  E-value=3.7e-05  Score=50.86  Aligned_cols=21  Identities=33%  Similarity=0.610  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028792           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~   30 (203)
                      .|+++|++||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKSTvak~La~   24 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQ   24 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999975

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.35  E-value=4.9e-05  Score=51.37  Aligned_cols=25  Identities=20%  Similarity=0.210  Sum_probs=21.3

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhc
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      +...-|+++|.|||||||++++|..
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3456789999999999999999864

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.35  E-value=4.7e-05  Score=51.38  Aligned_cols=21  Identities=33%  Similarity=0.699  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028792           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~   30 (203)
                      .|+|.|++|+|||||++.+..
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~   23 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            489999999999999999873

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=0.0002  Score=52.06  Aligned_cols=63  Identities=21%  Similarity=0.131  Sum_probs=38.9

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcc---ccceeeEEEEEE-ECCeEEEEEEEeCCChh
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYIS---TIGVDFKIRTVE-QDGKTIKLQIWDTAGQE   68 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~i~D~~g~~   68 (203)
                      ..+.=|.|+|+.++|||+|+|.|++....-...+   ..+..+-..... ..+....+.++|+.|..
T Consensus        30 ~~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~~   96 (277)
T d1f5na2          30 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLG   96 (277)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBC
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeeccCCCCceEEEEeccccc
Confidence            3466789999999999999999997653211111   111112222222 23344678899999954

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.28  E-value=8e-05  Score=51.05  Aligned_cols=22  Identities=23%  Similarity=0.552  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      +.|+|+|+|||||||..+.|..
T Consensus         2 ~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           2 LVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999998864

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.28  E-value=6.6e-05  Score=51.98  Aligned_cols=22  Identities=14%  Similarity=0.336  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      .-|+++|.|||||||+.++|..
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4588999999999999999974

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.26  E-value=6e-05  Score=50.43  Aligned_cols=22  Identities=41%  Similarity=0.501  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      .+|+++|++||||||+.+.|..
T Consensus         2 p~IvliG~~G~GKSTig~~La~   23 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLAK   23 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998863

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.23  E-value=7.9e-05  Score=50.36  Aligned_cols=19  Identities=21%  Similarity=0.275  Sum_probs=17.5

Q ss_pred             EEEEcCCCCcHHHHHHHHh
Q 028792           11 LLLIGDSGVGKSCLLLRFA   29 (203)
Q Consensus        11 i~i~G~~~~GKSsli~~l~   29 (203)
                      |+|.|++||||||+++.|.
T Consensus         4 I~i~G~~GsGKsT~~~~L~   22 (190)
T d1khta_           4 VVVTGVPGVGSTTSSQLAM   22 (190)
T ss_dssp             EEEECCTTSCHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            7888999999999999885

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.22  E-value=8.5e-05  Score=50.76  Aligned_cols=21  Identities=38%  Similarity=0.675  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 028792           11 LLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        11 i~i~G~~~~GKSsli~~l~~~   31 (203)
                      |+|+||+|||||||+++|...
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            799999999999999999753

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.22  E-value=7.8e-05  Score=49.69  Aligned_cols=21  Identities=38%  Similarity=0.542  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028792           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~   30 (203)
                      +|+++|++||||||+.+.|..
T Consensus         2 ~I~liG~~GsGKsTi~k~La~   22 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAK   22 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998853

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.19  E-value=9.1e-05  Score=49.46  Aligned_cols=20  Identities=40%  Similarity=0.569  Sum_probs=17.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q 028792           11 LLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        11 i~i~G~~~~GKSsli~~l~~   30 (203)
                      ++++|++||||||+.+.|..
T Consensus         9 ivl~G~~GsGKsT~a~~La~   28 (171)
T d1knqa_           9 YVLMGVSGSGKSAVASEVAH   28 (171)
T ss_dssp             EEEECSTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            56799999999999999864

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.19  E-value=9.6e-05  Score=50.21  Aligned_cols=21  Identities=33%  Similarity=0.513  Sum_probs=18.8

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 028792           11 LLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        11 i~i~G~~~~GKSsli~~l~~~   31 (203)
                      |+|+||+|||||||++.|...
T Consensus         5 ivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           5 VVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            689999999999999999753

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.18  E-value=0.00011  Score=49.22  Aligned_cols=22  Identities=23%  Similarity=0.389  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      +-|.++|.|||||||+.+.|..
T Consensus         7 ~~I~l~G~~GsGKTTia~~La~   28 (183)
T d1m8pa3           7 FTIFLTGYMNSGKDAIARALQV   28 (183)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            6788999999999999988863

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.16  E-value=0.00011  Score=49.09  Aligned_cols=21  Identities=43%  Similarity=0.564  Sum_probs=18.6

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 028792           11 LLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        11 i~i~G~~~~GKSsli~~l~~~   31 (203)
                      |++.|++||||||+.+.|...
T Consensus         7 I~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           7 LLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             EEEEECTTSCHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            778999999999999998753

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.16  E-value=0.00011  Score=49.85  Aligned_cols=21  Identities=38%  Similarity=0.574  Sum_probs=17.6

Q ss_pred             eEEE-EEcCCCCcHHHHHHHHh
Q 028792            9 FKLL-LIGDSGVGKSCLLLRFA   29 (203)
Q Consensus         9 ~~i~-i~G~~~~GKSsli~~l~   29 (203)
                      +||+ |.|.+||||||+++.|.
T Consensus         1 mkiivi~G~~GsGKTT~~~~La   22 (194)
T d1nksa_           1 MKIGIVTGIPGVGKSTVLAKVK   22 (194)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            3565 57999999999999985

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=97.16  E-value=0.00011  Score=52.25  Aligned_cols=23  Identities=30%  Similarity=0.301  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~   32 (203)
                      .++|+|++|||||||++.|.+-.
T Consensus        31 ~vaIvG~sGsGKSTLl~ll~gl~   53 (241)
T d2pmka1          31 VIGIVGRSGSGKSTLTKLIQRFY   53 (241)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            58999999999999999998743

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=97.14  E-value=0.00018  Score=53.53  Aligned_cols=23  Identities=17%  Similarity=0.384  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~   31 (203)
                      -+|+|.|++|||||||+++|+..
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~  189 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEF  189 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGG
T ss_pred             CCEEEEeeccccchHHHHHHhhh
Confidence            36999999999999999999863

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.13  E-value=0.00015  Score=50.20  Aligned_cols=23  Identities=26%  Similarity=0.394  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~   32 (203)
                      -++++|+.|+|||||++.+.+-.
T Consensus        29 i~~l~G~NGsGKSTLl~~i~gl~   51 (200)
T d1sgwa_          29 VVNFHGPNGIGKTTLLKTISTYL   51 (200)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCChHHHHHHHHhccc
Confidence            36899999999999999998744

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.11  E-value=0.00013  Score=48.82  Aligned_cols=21  Identities=29%  Similarity=0.411  Sum_probs=17.9

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 028792           11 LLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        11 i~i~G~~~~GKSsli~~l~~~   31 (203)
                      |+|.|++||||||+.+.|...
T Consensus         6 I~l~G~~GsGKsTva~~L~~~   26 (178)
T d1qhxa_           6 IILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            566699999999999999753

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.11  E-value=0.00016  Score=49.54  Aligned_cols=24  Identities=17%  Similarity=0.389  Sum_probs=20.8

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhc
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      ..--|+|+|+|||||||+...|..
T Consensus         7 ~~~iI~i~GppGSGKsT~a~~La~   30 (196)
T d1ukza_           7 QVSVIFVLGGPGAGKGTQCEKLVK   30 (196)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            455689999999999999999975

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.10  E-value=0.00013  Score=49.93  Aligned_cols=20  Identities=45%  Similarity=0.689  Sum_probs=18.5

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q 028792           11 LLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        11 i~i~G~~~~GKSsli~~l~~   30 (203)
                      |+|+||+|||||||+++|..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~   22 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQ   22 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999864

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.09  E-value=0.00013  Score=49.98  Aligned_cols=22  Identities=18%  Similarity=0.388  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      --|+|+|+|||||||+...|..
T Consensus         9 ~iI~l~G~pGSGKsT~a~~La~   30 (194)
T d3adka_           9 KIIFVVGGPGSGKGTQCEKIVQ   30 (194)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3488999999999999999974

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.06  E-value=0.00012  Score=52.66  Aligned_cols=22  Identities=32%  Similarity=0.430  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      --|++.|+||+|||||+++|..
T Consensus        33 ~~ilL~GpPGtGKT~la~~la~   54 (273)
T d1gvnb_          33 TAFLLGGQPGSGKTSLRSAIFE   54 (273)
T ss_dssp             EEEEEECCTTSCTHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            3589999999999999999975

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.05  E-value=0.00016  Score=51.79  Aligned_cols=22  Identities=32%  Similarity=0.418  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~   31 (203)
                      .++|+|++|||||||++.|.+-
T Consensus        43 ~iaivG~sGsGKSTLl~ll~gl   64 (253)
T d3b60a1          43 TVALVGRSGSGKSTIASLITRF   64 (253)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTT
T ss_pred             EEEEECCCCChHHHHHHHHhcc
Confidence            5899999999999999999863

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.04  E-value=0.00016  Score=50.18  Aligned_cols=21  Identities=29%  Similarity=0.469  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 028792           11 LLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        11 i~i~G~~~~GKSsli~~l~~~   31 (203)
                      |+|+||+|||||||+++|+..
T Consensus         5 ivi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           5 YIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             EEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            789999999999999999853

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.03  E-value=0.00017  Score=48.40  Aligned_cols=20  Identities=20%  Similarity=0.489  Sum_probs=18.1

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q 028792           11 LLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        11 i~i~G~~~~GKSsli~~l~~   30 (203)
                      |+++|++||||||+.+.|..
T Consensus         5 Iil~G~~GsGKSTia~~LA~   24 (170)
T d1e6ca_           5 IFMVGARGCGMTTVGRELAR   24 (170)
T ss_dssp             EEEESCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999863

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=97.03  E-value=0.00024  Score=50.52  Aligned_cols=22  Identities=27%  Similarity=0.324  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~   31 (203)
                      .++|+|+.|+|||||++.|.+-
T Consensus        30 ~vaivG~sGsGKSTLl~ll~gl   51 (242)
T d1mv5a_          30 IIAFAGPSGGGKSTIFSLLERF   51 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            6899999999999999999863

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.02  E-value=0.00018  Score=51.51  Aligned_cols=23  Identities=26%  Similarity=0.322  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~   32 (203)
                      .++|+|+.|||||||++.|.+-.
T Consensus        42 ~vaivG~sGsGKSTLl~li~gl~   64 (251)
T d1jj7a_          42 VTALVGPNGSGKSTVAALLQNLY   64 (251)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhccc
Confidence            57999999999999999988743

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=97.02  E-value=0.00038  Score=45.99  Aligned_cols=23  Identities=30%  Similarity=0.439  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~   31 (203)
                      .-|++-|+-|||||||++.+...
T Consensus        34 ~ii~L~G~LGaGKTtfvr~~~~~   56 (158)
T d1htwa_          34 IMVYLNGDLGAGKTTLTRGMLQG   56 (158)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEecCCCccHHHHHHHHHhh
Confidence            34788999999999999999843

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=97.02  E-value=0.00019  Score=50.84  Aligned_cols=24  Identities=42%  Similarity=0.540  Sum_probs=21.2

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhc
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      ..-.+++.||||+||||+++.+..
T Consensus        34 ~~~~~Ll~GPpG~GKTtla~~la~   57 (239)
T d1ixsb2          34 PLEHLLLFGPPGLGKTTLAHVIAH   57 (239)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHH
Confidence            456799999999999999999875

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.01  E-value=0.0002  Score=48.76  Aligned_cols=24  Identities=25%  Similarity=0.163  Sum_probs=20.9

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhc
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      ..+=|+|.|++|||||||.+.|..
T Consensus        21 ~~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          21 GRLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            456699999999999999999863

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.99  E-value=0.00024  Score=50.12  Aligned_cols=22  Identities=41%  Similarity=0.534  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~   31 (203)
                      -++++|+.|||||||++.+.+-
T Consensus        28 i~~liGpsGsGKSTLl~~i~Gl   49 (232)
T d2awna2          28 FVVFVGPSGCGKSTLLRMIAGL   49 (232)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHhcC
Confidence            3789999999999999998764

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.98  E-value=0.0002  Score=50.69  Aligned_cols=22  Identities=36%  Similarity=0.499  Sum_probs=19.4

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCC
Q 028792           11 LLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        11 i~i~G~~~~GKSsli~~l~~~~   32 (203)
                      ++++|+.|+|||||++.+.+-.
T Consensus        27 ~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          27 CVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEECCCCChHHHHHHHHHcCC
Confidence            5689999999999999998744

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.98  E-value=9.3e-05  Score=50.49  Aligned_cols=22  Identities=27%  Similarity=0.496  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      .-|.++|.|||||||+.+.|..
T Consensus        20 ~vI~L~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          20 CTVWLTGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             EEEEEESSCHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4678999999999999999963

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.97  E-value=0.00021  Score=52.05  Aligned_cols=23  Identities=30%  Similarity=0.556  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~   32 (203)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        64 ~vaivG~nGsGKSTLl~~i~Gl~   86 (281)
T d1r0wa_          64 MLAITGSTGSGKTSLLMLILGEL   86 (281)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhCCC
Confidence            48899999999999999998743

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.97  E-value=0.00025  Score=50.03  Aligned_cols=23  Identities=30%  Similarity=0.336  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~   32 (203)
                      -++++|++|||||||++.+.+-.
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~gl~   55 (230)
T d1l2ta_          33 FVSIMGPSGSGKSTMLNIIGCLD   55 (230)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCcchhhHhccCCC
Confidence            37899999999999999887743

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.93  E-value=0.00026  Score=49.37  Aligned_cols=24  Identities=21%  Similarity=0.246  Sum_probs=20.9

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhc
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      ..+.|+|.|+|||||||+.+.|..
T Consensus         2 k~i~IaIdGp~GsGKgT~ak~La~   25 (223)
T d1q3ta_           2 KTIQIAIDGPASSGKSTVAKIIAK   25 (223)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            347889999999999999999874

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.92  E-value=0.0003  Score=49.82  Aligned_cols=23  Identities=39%  Similarity=0.484  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~   32 (203)
                      -+.++|++|+|||||++.+.+-.
T Consensus        34 ~~~liGpsGaGKSTLl~~i~Gl~   56 (239)
T d1v43a3          34 FLVLLGPSGCGKTTTLRMIAGLE   56 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            37899999999999999998744

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.91  E-value=0.00027  Score=48.42  Aligned_cols=23  Identities=35%  Similarity=0.590  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      .-+++++|+||+|||++++.|..
T Consensus        43 k~n~lLvG~pGVGKTalv~~LA~   65 (195)
T d1jbka_          43 KNNPVLIGEPGVGKTAIVEGLAQ   65 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCeEEEecCCcccHHHHHHHHH
Confidence            34789999999999999998874

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.91  E-value=0.00023  Score=50.24  Aligned_cols=22  Identities=36%  Similarity=0.501  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      ..+++.||||+||||+++.|..
T Consensus        36 ~~~L~~GPpGtGKT~lA~~la~   57 (238)
T d1in4a2          36 DHVLLAGPPGLGKTTLAHIIAS   57 (238)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHh
Confidence            4689999999999999999875

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=96.90  E-value=0.00029  Score=50.03  Aligned_cols=22  Identities=36%  Similarity=0.481  Sum_probs=19.9

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCC
Q 028792           11 LLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        11 i~i~G~~~~GKSsli~~l~~~~   32 (203)
                      +.++|+.|+|||||++.+.+-.
T Consensus        35 ~~liGpnGaGKSTl~~~i~Gl~   56 (240)
T d1ji0a_          35 VTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCcHHHHHHHHhCCC
Confidence            6899999999999999998754

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=96.88  E-value=0.00032  Score=49.76  Aligned_cols=22  Identities=32%  Similarity=0.369  Sum_probs=19.8

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCC
Q 028792           11 LLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        11 i~i~G~~~~GKSsli~~l~~~~   32 (203)
                      +.++|+.|+|||||++.|.+-.
T Consensus        31 ~glvG~nGaGKSTLl~~l~G~~   52 (238)
T d1vpla_          31 FGLIGPNGAGKTTTLRIISTLI   52 (238)
T ss_dssp             EEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            6799999999999999998754

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=96.86  E-value=0.0002  Score=50.67  Aligned_cols=21  Identities=52%  Similarity=0.743  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 028792           11 LLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        11 i~i~G~~~~GKSsli~~l~~~   31 (203)
                      ++++|+.|+|||||++.+.+-
T Consensus        28 ~~iiG~nGaGKSTLl~~l~Gl   48 (231)
T d1l7vc_          28 LHLVGPNGAGKSTLLARMAGM   48 (231)
T ss_dssp             EECBCCTTSSHHHHHHHHHTS
T ss_pred             EEEECCCCCcHHHHHHHHhCC
Confidence            689999999999999999873

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=96.84  E-value=0.00026  Score=49.82  Aligned_cols=22  Identities=27%  Similarity=0.502  Sum_probs=20.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCC
Q 028792           11 LLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        11 i~i~G~~~~GKSsli~~l~~~~   32 (203)
                      ++++|+.|+|||||++.+.+-.
T Consensus        29 ~~liGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          29 FVILGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             EEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEECCCCCcHHHHHHHHhcCc
Confidence            7899999999999999999854

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=96.83  E-value=0.00029  Score=49.96  Aligned_cols=23  Identities=35%  Similarity=0.297  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~   32 (203)
                      -+.++|++|||||||++.+.+-.
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~Gl~   55 (240)
T d3dhwc1          33 IYGVIGASGAGKSTLIRCVNLLE   55 (240)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHcCCc
Confidence            36899999999999999998743

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.82  E-value=0.00021  Score=51.19  Aligned_cols=21  Identities=33%  Similarity=0.461  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028792           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~   30 (203)
                      .++|+|++|||||||++.|.+
T Consensus        46 ~vaivG~sGsGKSTLl~ll~g   66 (255)
T d2hyda1          46 TVAFVGMSGGGKSTLINLIPR   66 (255)
T ss_dssp             EEEEECSTTSSHHHHHTTTTT
T ss_pred             EEEEECCCCCcHHHHHHHHHh
Confidence            689999999999999998876

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=96.80  E-value=0.00041  Score=49.15  Aligned_cols=23  Identities=35%  Similarity=0.481  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~   32 (203)
                      -+.++|+.|+|||||++.+.+-.
T Consensus        31 ~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          31 FMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            47899999999999999998744

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.79  E-value=0.00037  Score=50.28  Aligned_cols=22  Identities=41%  Similarity=0.558  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      -+++++|+||+|||++++.|..
T Consensus        40 ~n~lLVG~~GvGKTalv~~la~   61 (268)
T d1r6bx2          40 NNPLLVGESGVGKTAIAEGLAW   61 (268)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEECCCCCcHHHHHHHHHH
Confidence            4799999999999999999874

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.74  E-value=0.00046  Score=49.43  Aligned_cols=22  Identities=36%  Similarity=0.460  Sum_probs=19.9

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCC
Q 028792           11 LLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        11 i~i~G~~~~GKSsli~~l~~~~   32 (203)
                      +.++|+.|+|||||++.+.+-.
T Consensus        33 ~~liG~nGaGKSTLl~~i~Gl~   54 (254)
T d1g6ha_          33 TLIIGPNGSGKSTLINVITGFL   54 (254)
T ss_dssp             EEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCcHHHHHHHHHCCC
Confidence            6899999999999999998754

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.71  E-value=0.00048  Score=48.36  Aligned_cols=22  Identities=41%  Similarity=0.579  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      -.+++.|++|+||||+++.+..
T Consensus        46 ~~lll~Gp~G~GKTtla~~iak   67 (231)
T d1iqpa2          46 PHLLFAGPPGVGKTTAALALAR   67 (231)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHH
Confidence            4689999999999999999875

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.69  E-value=0.00051  Score=48.96  Aligned_cols=23  Identities=35%  Similarity=0.543  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      .-.|++.|+||+|||+|++++.+
T Consensus        40 ~~~vLL~GppGtGKT~la~alA~   62 (246)
T d1d2na_          40 LVSVLLEGPPHSGKTALAAKIAE   62 (246)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECcCCCCHHHHHHHHhh
Confidence            45799999999999999999975

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.69  E-value=0.00036  Score=49.87  Aligned_cols=24  Identities=25%  Similarity=0.416  Sum_probs=20.9

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhc
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      ..-.++|.|+||+|||++++.+..
T Consensus        42 ~~~~lll~GppGtGKT~l~~~l~~   65 (276)
T d1fnna2          42 HYPRATLLGRPGTGKTVTLRKLWE   65 (276)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHH
Confidence            345799999999999999999875

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.68  E-value=0.00046  Score=49.50  Aligned_cols=23  Identities=35%  Similarity=0.381  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~   32 (203)
                      -+.|+|+.|||||||++.+.+-.
T Consensus        30 i~~iiG~sGsGKSTLl~~i~Gl~   52 (258)
T d1b0ua_          30 VISIIGSSGSGKSTFLRCINFLE   52 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCc
Confidence            37899999999999999998743

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.65  E-value=0.00046  Score=50.93  Aligned_cols=22  Identities=41%  Similarity=0.694  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      -.++++||||+|||.|.+++..
T Consensus        50 ~~iLl~GPpG~GKT~lAkalA~   71 (309)
T d1ofha_          50 KNILMIGPTGVGKTEIARRLAK   71 (309)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHhh
Confidence            4689999999999999999975

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.62  E-value=0.00052  Score=48.73  Aligned_cols=23  Identities=26%  Similarity=0.403  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~   31 (203)
                      -.+++.||||+||||+++.+...
T Consensus        53 ~~lll~GPpG~GKTt~a~~la~~   75 (253)
T d1sxja2          53 RAAMLYGPPGIGKTTAAHLVAQE   75 (253)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999999863

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.60  E-value=0.00051  Score=49.33  Aligned_cols=21  Identities=29%  Similarity=0.273  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028792           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~   30 (203)
                      -+++.|+||+|||++++.+..
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~   68 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVK   68 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHH
Confidence            345679999999999999875

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.60  E-value=0.00068  Score=46.93  Aligned_cols=23  Identities=22%  Similarity=0.358  Sum_probs=20.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      .+-|+|.|++|||||||.+.|..
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~   24 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQ   24 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            36789999999999999998853

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.56  E-value=0.00038  Score=49.34  Aligned_cols=23  Identities=26%  Similarity=0.460  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~   32 (203)
                      .++++|++|+|||||++.+.+-.
T Consensus        33 ~~~iiG~sGsGKSTll~~i~gl~   55 (242)
T d1oxxk2          33 RFGILGPSGAGKTTFMRIIAGLD   55 (242)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCc
Confidence            47899999999999999998744

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.54  E-value=0.00065  Score=47.11  Aligned_cols=21  Identities=33%  Similarity=0.474  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028792           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~   30 (203)
                      =|+|.|||||||||+...|..
T Consensus         5 iI~I~GppGSGKgT~ak~La~   25 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAE   25 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            477889999999999999874

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.47  E-value=0.00074  Score=46.03  Aligned_cols=26  Identities=31%  Similarity=0.482  Sum_probs=22.5

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhc
Q 028792            5 YDYLFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         5 ~~~~~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      ..+.+-|+|-|..||||||+++.|..
T Consensus         6 ~~kp~~I~ieG~~GsGKTTl~~~L~~   31 (197)
T d2vp4a1           6 GTQPFTVLIEGNIGSGKTTYLNHFEK   31 (197)
T ss_dssp             TCCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHH
Confidence            44567899999999999999999875

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.45  E-value=0.00073  Score=48.16  Aligned_cols=21  Identities=43%  Similarity=0.646  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028792           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~   30 (203)
                      .|++.|+||+|||+|++.+.+
T Consensus        44 giLl~GppGtGKT~la~aia~   64 (247)
T d1ixza_          44 GVLLVGPPGVGKTHLARAVAG   64 (247)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEecCCCCChhHHHHHHHH
Confidence            589999999999999999986

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.42  E-value=0.00078  Score=48.10  Aligned_cols=21  Identities=24%  Similarity=0.256  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028792           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~   30 (203)
                      -|+|.|++|+|||||++++..
T Consensus        31 ~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          31 ITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHH
Confidence            477899999999999999864

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.38  E-value=0.00091  Score=46.88  Aligned_cols=22  Identities=27%  Similarity=0.564  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      -.+++.|++|+||||+++.+..
T Consensus        34 ~~lll~Gp~G~GKTtl~~~i~~   55 (237)
T d1sxjd2          34 PHMLFYGPPGTGKTSTILALTK   55 (237)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCChHHHHHHHHH
Confidence            3589999999999999999875

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.38  E-value=0.00089  Score=47.39  Aligned_cols=22  Identities=32%  Similarity=0.499  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      -.+++.|++|+||||+++.+..
T Consensus        34 ~~lll~Gp~G~GKTt~~~~la~   55 (252)
T d1sxje2          34 PHLLLYGPNGTGKKTRCMALLE   55 (252)
T ss_dssp             CCEEEECSTTSSHHHHHHTHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999875

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.35  E-value=0.00099  Score=46.48  Aligned_cols=22  Identities=23%  Similarity=0.430  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      -.+++.|++|+||||+++.|..
T Consensus        37 ~~~ll~Gp~G~GKTt~a~~la~   58 (224)
T d1sxjb2          37 PHMIISGMPGIGKTTSVHCLAH   58 (224)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCchhhHHHHHH
Confidence            4589999999999999998864

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.28  E-value=0.001  Score=47.63  Aligned_cols=23  Identities=30%  Similarity=0.504  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~   31 (203)
                      -.|++.|+||+|||++++++...
T Consensus        39 ~giLL~GppGtGKT~l~~ala~~   61 (258)
T d1e32a2          39 RGILLYGPPGTGKTLIARAVANE   61 (258)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceeEEecCCCCCchHHHHHHHHH
Confidence            46999999999999999999863

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.28  E-value=0.0012  Score=45.80  Aligned_cols=24  Identities=29%  Similarity=0.343  Sum_probs=20.6

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhc
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      +-+-|.+.|.||||||||.+.|..
T Consensus        23 kg~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          23 RGLTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            345689999999999999999864

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.28  E-value=0.0011  Score=47.46  Aligned_cols=22  Identities=32%  Similarity=0.510  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      -.+++.||||+|||++++.+..
T Consensus        46 ~~iLL~GppGtGKT~la~~iA~   67 (256)
T d1lv7a_          46 KGVLMVGPPGTGKTLLAKAIAG   67 (256)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEeeCCCCCCccHHHHHHHH
Confidence            3589999999999999999975

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.28  E-value=0.0011  Score=46.23  Aligned_cols=22  Identities=32%  Similarity=0.564  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      ..+++.|++|+||||+++.+..
T Consensus        36 ~~lLl~Gp~G~GKttl~~~la~   57 (227)
T d1sxjc2          36 PHLLFYGPPGTGKTSTIVALAR   57 (227)
T ss_dssp             CCEEEECSSSSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCChhHHHHHHHH
Confidence            3589999999999999999975

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.25  E-value=0.001  Score=51.52  Aligned_cols=22  Identities=41%  Similarity=0.694  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      -+|+++||+|||||-|.++|..
T Consensus        50 sNILliGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_          50 KNILMIGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             ccEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999999953

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.21  E-value=0.0015  Score=44.26  Aligned_cols=23  Identities=22%  Similarity=0.297  Sum_probs=20.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      .+-|+|.|.+||||||+.+.|..
T Consensus         3 p~IIgitG~~gSGKstva~~l~~   25 (191)
T d1uf9a_           3 PIIIGITGNIGSGKSTVAALLRS   25 (191)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            46788999999999999998864

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.16  E-value=0.0015  Score=44.76  Aligned_cols=21  Identities=24%  Similarity=0.453  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028792           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~   30 (203)
                      -|+|-|..||||||+++.|..
T Consensus         2 lI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999998864

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.96  E-value=0.0016  Score=46.80  Aligned_cols=23  Identities=30%  Similarity=0.491  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~   31 (203)
                      -.|++.|+||+|||+|++++.+.
T Consensus        42 ~giLL~Gp~GtGKT~l~~ala~~   64 (265)
T d1r7ra3          42 KGVLFYGPPGCGKTLLAKAIANE   64 (265)
T ss_dssp             CEEEEBCCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcchhHHHHHHHH
Confidence            46999999999999999999763

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=95.96  E-value=0.0013  Score=49.92  Aligned_cols=21  Identities=38%  Similarity=0.665  Sum_probs=18.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 028792            9 FKLLLIGDSGVGKSCLLLRFA   29 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~   29 (203)
                      -++++||+||||||++++.|.
T Consensus        44 ~n~llvG~~GvGKtaiv~~la   64 (387)
T d1qvra2          44 NNPVLIGEPGVGKTAIVEGLA   64 (387)
T ss_dssp             CCCEEEECTTSCHHHHHHHHH
T ss_pred             CCCeEECCCCCCHHHHHHHHH
Confidence            467999999999999997665

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=95.93  E-value=0.0028  Score=46.46  Aligned_cols=25  Identities=20%  Similarity=0.232  Sum_probs=21.5

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHh
Q 028792            5 YDYLFKLLLIGDSGVGKSCLLLRFA   29 (203)
Q Consensus         5 ~~~~~~i~i~G~~~~GKSsli~~l~   29 (203)
                      ....+-|.|.|++|||||||.+.|.
T Consensus        77 ~k~P~iIGIaG~sgSGKSTla~~L~  101 (308)
T d1sq5a_          77 QRIPYIISIAGSVAVGKSTTARVLQ  101 (308)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCCCcHHHHHHH
Confidence            3456889999999999999988875

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.85  E-value=0.0034  Score=46.20  Aligned_cols=22  Identities=27%  Similarity=0.534  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      -.++++||+|+|||.|.+.|..
T Consensus        53 ~~~lf~Gp~GvGKT~lak~la~   74 (315)
T d1r6bx3          53 GSFLFAGPTGVGKTEVTVQLSK   74 (315)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCcchhHHHHHHHHh
Confidence            3689999999999999999863

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=95.79  E-value=0.0033  Score=43.30  Aligned_cols=23  Identities=39%  Similarity=0.550  Sum_probs=19.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      .+-|+|.|..||||||+.+.|..
T Consensus         3 k~iIgitG~igSGKStv~~~l~~   25 (208)
T d1vhta_           3 RYIVALTGGIGSGKSTVANAFAD   25 (208)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEECCCcCCHHHHHHHHHH
Confidence            45688999999999999998764

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.73  E-value=0.0028  Score=43.60  Aligned_cols=20  Identities=20%  Similarity=0.327  Sum_probs=17.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q 028792           11 LLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        11 i~i~G~~~~GKSsli~~l~~   30 (203)
                      |+|-|..||||||+++.|..
T Consensus         5 IviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           5 IVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             EEEEECTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            77889999999999998863

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=95.72  E-value=0.0034  Score=43.08  Aligned_cols=23  Identities=30%  Similarity=0.472  Sum_probs=19.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      .+-|+|.|..||||||+.+.|..
T Consensus         2 ~~iIgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           2 TYIVGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEEECCCCCCHHHHHHHHHH
Confidence            46789999999999999998753

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=95.67  E-value=0.0015  Score=48.45  Aligned_cols=20  Identities=40%  Similarity=0.649  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 028792           10 KLLLIGDSGVGKSCLLLRFA   29 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~   29 (203)
                      .|+++|+||+|||+|++++.
T Consensus        30 ~vLl~G~pG~GKT~lar~~~   49 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALA   49 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHH
Confidence            58999999999999999885

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.66  E-value=0.0032  Score=43.01  Aligned_cols=23  Identities=17%  Similarity=0.187  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~   32 (203)
                      -+.|.|+||+|||+|...|....
T Consensus        25 v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          25 ITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            36899999999999999987543

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=95.64  E-value=0.0028  Score=47.62  Aligned_cols=22  Identities=23%  Similarity=0.250  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      --+++.||||+|||+|.+.|.+
T Consensus       155 ~~~~~~g~~~~gk~~~~~~~~~  176 (362)
T d1svma_         155 RYWLFKGPIDSGKTTLAAALLE  176 (362)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999874

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.60  E-value=0.0052  Score=44.47  Aligned_cols=25  Identities=20%  Similarity=0.303  Sum_probs=20.6

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHh
Q 028792            5 YDYLFKLLLIGDSGVGKSCLLLRFA   29 (203)
Q Consensus         5 ~~~~~~i~i~G~~~~GKSsli~~l~   29 (203)
                      ....+=|.|-|++|||||||...|.
T Consensus        24 ~~~P~iIGi~G~qGSGKSTl~~~l~   48 (286)
T d1odfa_          24 NKCPLFIFFSGPQGSGKSFTSIQIY   48 (286)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCEEEEeECCCCCCHHHHHHHHH
Confidence            3456788999999999999987663

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=95.56  E-value=0.00066  Score=46.15  Aligned_cols=18  Identities=39%  Similarity=0.621  Sum_probs=16.3

Q ss_pred             EEEcCCCCcHHHHHHHHh
Q 028792           12 LLIGDSGVGKSCLLLRFA   29 (203)
Q Consensus        12 ~i~G~~~~GKSsli~~l~   29 (203)
                      +|+|+.|||||||+.+|.
T Consensus        28 vi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          28 TLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHSCCSHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            568999999999999985

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.54  E-value=0.0035  Score=43.26  Aligned_cols=20  Identities=25%  Similarity=0.373  Sum_probs=17.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q 028792           11 LLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        11 i~i~G~~~~GKSsli~~l~~   30 (203)
                      |+|-|..||||||+++.|..
T Consensus         6 I~ieG~dGsGKsT~~~~L~~   25 (209)
T d1nn5a_           6 IVLEGVDRAGKSTQSRKLVE   25 (209)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67779999999998888753

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.46  E-value=0.0038  Score=43.59  Aligned_cols=23  Identities=30%  Similarity=0.232  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~   32 (203)
                      -++|.|+||+|||+|...+....
T Consensus        36 ~~li~G~pGsGKT~l~lq~~~~~   58 (251)
T d1szpa2          36 ITELFGEFRTGKSQLCHTLAVTC   58 (251)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Confidence            47899999999999999987543

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=95.46  E-value=0.0044  Score=41.50  Aligned_cols=23  Identities=43%  Similarity=0.644  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~   32 (203)
                      -|+|.|++|+||||+.-.|...-
T Consensus        16 gvl~~G~sG~GKStlal~l~~~g   38 (176)
T d1kkma_          16 GVLITGDSGVGKSETALELVQRG   38 (176)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHTT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHcC
Confidence            48999999999999999988643

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=95.44  E-value=0.0036  Score=47.06  Aligned_cols=23  Identities=35%  Similarity=0.554  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      .-+++++||+|+|||-|.++|..
T Consensus        68 ~~niLfiGPTGvGKTElAk~LA~   90 (364)
T d1um8a_          68 KSNILLIGPTGSGKTLMAQTLAK   90 (364)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CcceeeeCCCCccHHHHHHHHHh
Confidence            45699999999999999999863

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.42  E-value=0.0026  Score=44.48  Aligned_cols=21  Identities=24%  Similarity=0.382  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028792           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~   30 (203)
                      .|+|-|+.||||||+++.|..
T Consensus         4 ~I~ieG~dGsGKST~~~~L~~   24 (241)
T d1p5zb_           4 KISIEGNIAAGKSTFVNILKQ   24 (241)
T ss_dssp             EEEEECSTTSSHHHHHTTTGG
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999998875

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=95.34  E-value=0.0053  Score=41.11  Aligned_cols=23  Identities=39%  Similarity=0.596  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~~   32 (203)
                      -|+|.|++|+||||+.-.|...-
T Consensus        17 gvli~G~sG~GKS~lal~l~~~G   39 (177)
T d1knxa2          17 GVLLTGRSGIGKSECALDLINKN   39 (177)
T ss_dssp             EEEEEESSSSSHHHHHHHHHTTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHcC
Confidence            47899999999999999998643

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.31  E-value=0.0031  Score=45.87  Aligned_cols=19  Identities=26%  Similarity=0.485  Sum_probs=16.8

Q ss_pred             EEEEcCCCCcHHHHHHHHh
Q 028792           11 LLLIGDSGVGKSCLLLRFA   29 (203)
Q Consensus        11 i~i~G~~~~GKSsli~~l~   29 (203)
                      .+++|+.|+||||++.+|.
T Consensus        27 nvlvG~NgsGKS~iL~Ai~   45 (308)
T d1e69a_          27 TAIVGPNGSGKSNIIDAIK   45 (308)
T ss_dssp             EEEECCTTTCSTHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHH
Confidence            3789999999999999883

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.31  E-value=0.0044  Score=44.68  Aligned_cols=24  Identities=33%  Similarity=0.458  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcC
Q 028792            8 LFKLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus         8 ~~~i~i~G~~~~GKSsli~~l~~~   31 (203)
                      ..-|.|.|+.|+|||||+..+++.
T Consensus        44 ~~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          44 SFFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHh
Confidence            346789999999999999998753

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.28  E-value=0.0048  Score=43.30  Aligned_cols=22  Identities=27%  Similarity=0.256  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028792           10 KLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~~   31 (203)
                      -++|.|+||+|||+|...+...
T Consensus        38 ~~li~G~pGsGKT~~~lq~~~~   59 (254)
T d1pzna2          38 ITEVFGEFGSGKTQLAHTLAVM   59 (254)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            4789999999999999988753

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=95.19  E-value=0.0052  Score=46.77  Aligned_cols=21  Identities=33%  Similarity=0.506  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 028792           11 LLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        11 i~i~G~~~~GKSsli~~l~~~   31 (203)
                      |+|.|++||||||+++.++..
T Consensus       161 iLvtGpTGSGKSTTl~~~l~~  181 (401)
T d1p9ra_         161 ILVTGPTGSGKSTTLYAGLQE  181 (401)
T ss_dssp             EEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEcCCCCCccHHHHHHhhh
Confidence            899999999999999999863

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=95.14  E-value=0.006  Score=44.88  Aligned_cols=20  Identities=20%  Similarity=0.491  Sum_probs=17.3

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q 028792           11 LLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        11 i~i~G~~~~GKSsli~~l~~   30 (203)
                      +++.|+||+|||.|.+.|..
T Consensus       126 ~l~~G~pG~GKT~la~ala~  145 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHALGE  145 (321)
T ss_dssp             EEEECSSSSCHHHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHH
Confidence            44579999999999999975

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=94.95  E-value=0.007  Score=42.26  Aligned_cols=23  Identities=35%  Similarity=0.648  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~   31 (203)
                      --++|.|+||+|||+|+.++...
T Consensus        27 sl~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          27 SIILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHH
Confidence            45789999999999999998753

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=94.91  E-value=0.0034  Score=45.44  Aligned_cols=20  Identities=30%  Similarity=0.476  Sum_probs=15.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 028792           10 KLLLIGDSGVGKSCLLLRFA   29 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~   29 (203)
                      =|+|.|++||||||+.++|.
T Consensus         6 IIgIaG~SGSGKTTva~~l~   25 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFD   25 (288)
T ss_dssp             EEEEESCC---CCTHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHH
Confidence            48999999999999999874

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=94.91  E-value=0.0076  Score=40.03  Aligned_cols=24  Identities=38%  Similarity=0.596  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCC
Q 028792            9 FKLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~~~   32 (203)
                      .-|+|.|++|+||||+.-.|...-
T Consensus        16 ~gvli~G~sg~GKS~la~~l~~~g   39 (169)
T d1ko7a2          16 VGVLITGDSGIGKSETALELIKRG   39 (169)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHTT
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHcC
Confidence            358999999999999998888643

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=94.85  E-value=0.0088  Score=44.11  Aligned_cols=24  Identities=21%  Similarity=0.386  Sum_probs=21.8

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhc
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      ..++|.|=|.-|+||||+++.|..
T Consensus         3 ~~lrI~IEG~iGsGKTTl~~~La~   26 (329)
T d1e2ka_           3 TLLRVYIDGPHGMGKTTTTQLLVA   26 (329)
T ss_dssp             EEEEEEECSCTTSSHHHHHHHHTC
T ss_pred             CceEEEEECCcCCCHHHHHHHHHH
Confidence            568899999999999999999864

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.85  E-value=0.0075  Score=42.15  Aligned_cols=21  Identities=29%  Similarity=0.472  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028792           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~   30 (203)
                      -|+|=|..||||||+++.|..
T Consensus         4 ~IviEG~~GsGKST~~~~L~~   24 (241)
T d2ocpa1           4 RLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            478899999999999999974

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=94.84  E-value=0.011  Score=43.78  Aligned_cols=25  Identities=28%  Similarity=0.321  Sum_probs=22.5

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcC
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~~   31 (203)
                      ..++|.|=|.-|+||||+++.|...
T Consensus         5 ~~~rI~iEG~iGsGKSTl~~~L~~~   29 (333)
T d1p6xa_           5 TIVRIYLDGVYGIGKSTTGRVMASA   29 (333)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHSG
T ss_pred             ceEEEEEECCccCCHHHHHHHHHHH
Confidence            5689999999999999999998763

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.81  E-value=0.0087  Score=41.09  Aligned_cols=20  Identities=25%  Similarity=0.519  Sum_probs=18.1

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q 028792           11 LLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        11 i~i~G~~~~GKSsli~~l~~   30 (203)
                      +++.|++|+||||+++.+..
T Consensus        27 lLl~Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2          27 LLIQALPGMGDDALIYALSR   46 (207)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            89999999999999997753

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.76  E-value=0.0087  Score=41.98  Aligned_cols=19  Identities=37%  Similarity=0.590  Sum_probs=17.4

Q ss_pred             EEEEcCCCCcHHHHHHHHh
Q 028792           11 LLLIGDSGVGKSCLLLRFA   29 (203)
Q Consensus        11 i~i~G~~~~GKSsli~~l~   29 (203)
                      +++.|++|+|||++++.+.
T Consensus        37 ~Ll~Gp~G~GKtt~a~~~~   55 (239)
T d1njfa_          37 YLFSGTRGVGKTSIARLLA   55 (239)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHH
Confidence            7889999999999999875

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=94.68  E-value=0.0064  Score=41.47  Aligned_cols=25  Identities=24%  Similarity=0.290  Sum_probs=20.9

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhc
Q 028792            6 DYLFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         6 ~~~~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      ++.=-+++.|++++|||.|+..|+.
T Consensus        51 PKkn~i~~~GP~~TGKS~f~~sl~~   75 (205)
T d1tuea_          51 PKKNCLVFCGPANTGKSYFGMSFIH   75 (205)
T ss_dssp             TTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred             CCceEEEEECCCCccHHHHHHHHHH
Confidence            3445689999999999999998874

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.64  E-value=0.0077  Score=45.53  Aligned_cols=19  Identities=32%  Similarity=0.511  Sum_probs=16.8

Q ss_pred             EEEEcCCCCcHHHHHHHHh
Q 028792           11 LLLIGDSGVGKSCLLLRFA   29 (203)
Q Consensus        11 i~i~G~~~~GKSsli~~l~   29 (203)
                      .+|+|+.|+|||+++.++.
T Consensus        28 ~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          28 TSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            3588999999999999984

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=94.64  E-value=0.009  Score=44.14  Aligned_cols=25  Identities=24%  Similarity=0.430  Sum_probs=22.4

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcC
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~~   31 (203)
                      ..++|.|=|.-|+||||+++.|...
T Consensus         4 ~~lrI~IEG~iGsGKSTl~~~L~~~   28 (331)
T d1osna_           4 GVLRIYLDGAYGIGKTTAAEEFLHH   28 (331)
T ss_dssp             EEEEEEEEESSSSCTTHHHHHHHHT
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHH
Confidence            5689999999999999999999753

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.59  E-value=0.01  Score=41.54  Aligned_cols=21  Identities=19%  Similarity=0.120  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028792           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~   30 (203)
                      -++|.|+||+|||+|...+..
T Consensus        39 ~~~i~G~~GsGKT~lalq~~~   59 (258)
T d1v5wa_          39 ITEAFGEFRTGKTQLSHTLCV   59 (258)
T ss_dssp             EEEEECCTTCTHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999999975

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=94.57  E-value=0.0097  Score=41.38  Aligned_cols=21  Identities=19%  Similarity=0.173  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028792           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~   30 (203)
                      -++|.|+||+|||+|...+..
T Consensus        36 l~~i~G~~G~GKT~~~l~~a~   56 (258)
T d2i1qa2          36 VTEFAGVFGSGKTQIMHQSCV   56 (258)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            468899999999999999874

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.39  E-value=0.011  Score=40.80  Aligned_cols=21  Identities=29%  Similarity=0.612  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 028792           11 LLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        11 i~i~G~~~~GKSsli~~l~~~   31 (203)
                      +.+.|++|+|||-|++++.+.
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~   59 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNE   59 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            789999999999999999764

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.36  E-value=0.012  Score=40.65  Aligned_cols=20  Identities=20%  Similarity=0.195  Sum_probs=18.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q 028792           11 LLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        11 i~i~G~~~~GKSsli~~l~~   30 (203)
                      |+|-|..||||||+++.|..
T Consensus         6 I~iEG~DGsGKST~~~~L~~   25 (214)
T d1tmka_           6 ILIEGLDRTGKTTQCNILYK   25 (214)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            78999999999999998863

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=94.16  E-value=0.0093  Score=43.04  Aligned_cols=15  Identities=27%  Similarity=0.625  Sum_probs=13.1

Q ss_pred             EEEEcCCCCcHHHHH
Q 028792           11 LLLIGDSGVGKSCLL   25 (203)
Q Consensus        11 i~i~G~~~~GKSsli   25 (203)
                      ++|+|.||+||||.+
T Consensus        17 ~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEECCCTTSCHHHHH
T ss_pred             EEEEeeCCccHHHHH
Confidence            689999999999754

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=94.07  E-value=0.015  Score=40.14  Aligned_cols=20  Identities=35%  Similarity=0.634  Sum_probs=17.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 028792           10 KLLLIGDSGVGKSCLLLRFA   29 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~   29 (203)
                      -++|.|+||+|||+|...+.
T Consensus        28 ~~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          28 STLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH
Confidence            46789999999999987765

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=94.05  E-value=0.013  Score=44.67  Aligned_cols=22  Identities=45%  Similarity=0.585  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      -+++|+|.+|+|||++++.++.
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li~   72 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELAY   72 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHHH
T ss_pred             ceEEEEeCCCCcHHHHHHHHHH
Confidence            4689999999999999887764

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=93.98  E-value=0.021  Score=41.82  Aligned_cols=20  Identities=40%  Similarity=0.692  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 028792           10 KLLLIGDSGVGKSCLLLRFA   29 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~   29 (203)
                      .++++|++|+|||.+.+.|.
T Consensus        55 ~~lf~Gp~G~GKt~lak~la   74 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLA   74 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHH
T ss_pred             EEEEECCCcchHHHHHHHHH
Confidence            57888999999999999875

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=93.91  E-value=0.017  Score=41.23  Aligned_cols=20  Identities=30%  Similarity=0.469  Sum_probs=17.5

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q 028792           11 LLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        11 i~i~G~~~~GKSsli~~l~~   30 (203)
                      ++|.|+||+|||+|+..+..
T Consensus        38 ~vi~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          38 IMVTSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            67999999999999888763

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=93.84  E-value=0.013  Score=42.57  Aligned_cols=15  Identities=40%  Similarity=0.789  Sum_probs=13.2

Q ss_pred             EEEEcCCCCcHHHHH
Q 028792           11 LLLIGDSGVGKSCLL   25 (203)
Q Consensus        11 i~i~G~~~~GKSsli   25 (203)
                      ++|.|.+|+||||.+
T Consensus        27 ~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          27 LLIMAGAGSGKTRVL   41 (318)
T ss_dssp             EEEEECTTSCHHHHH
T ss_pred             EEEEecCCccHHHHH
Confidence            789999999999754

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=93.40  E-value=0.023  Score=39.56  Aligned_cols=21  Identities=19%  Similarity=0.123  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028792           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~   30 (203)
                      -|+|.|..||||||+.+.|..
T Consensus         3 iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            378999999999999998854

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=93.22  E-value=0.025  Score=42.18  Aligned_cols=18  Identities=22%  Similarity=0.541  Sum_probs=15.3

Q ss_pred             EEEEcCCCCcHHHHHHHH
Q 028792           11 LLLIGDSGVGKSCLLLRF   28 (203)
Q Consensus        11 i~i~G~~~~GKSsli~~l   28 (203)
                      .+|.|+||+|||+++.++
T Consensus       166 ~vI~G~pGTGKTt~i~~~  183 (359)
T d1w36d1         166 SVISGGPGTGKTTTVAKL  183 (359)
T ss_dssp             EEEECCTTSTHHHHHHHH
T ss_pred             EEEEcCCCCCceehHHHH
Confidence            678999999999988553

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=93.16  E-value=0.025  Score=40.07  Aligned_cols=19  Identities=42%  Similarity=0.564  Sum_probs=16.8

Q ss_pred             EEEEcCCCCcHHHHHHHHh
Q 028792           11 LLLIGDSGVGKSCLLLRFA   29 (203)
Q Consensus        11 i~i~G~~~~GKSsli~~l~   29 (203)
                      ++|.|++|+|||+|+-.|.
T Consensus        32 ~~i~G~~G~GKS~l~l~la   50 (274)
T d1nlfa_          32 GALVSPGGAGKSMLALQLA   50 (274)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHH
Confidence            5689999999999998875

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=92.82  E-value=0.034  Score=39.67  Aligned_cols=26  Identities=19%  Similarity=0.289  Sum_probs=21.8

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHhc
Q 028792            5 YDYLFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         5 ~~~~~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      .+..--+.+.|++++|||+|++.+..
T Consensus       101 ~~k~n~~~l~G~~~tGKS~f~~~i~~  126 (267)
T d1u0ja_         101 FGKRNTIWLFGPATTGKTNIAEAIAH  126 (267)
T ss_dssp             STTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCccEEEEEEcCCCCCHHHHHHHHHH
Confidence            34556788999999999999999874

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.22  E-value=0.054  Score=33.52  Aligned_cols=24  Identities=17%  Similarity=0.175  Sum_probs=21.2

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhc
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      .=|.|.+.|..|+|||+|.++|..
T Consensus         5 qgf~i~~tg~~~~gk~~ia~al~~   28 (122)
T d1g8fa3           5 QGFSIVLGNSLTVSREQLSIALLS   28 (122)
T ss_dssp             CCEEEEECTTCCSCHHHHHHHHHH
T ss_pred             cceEEEEeCCCCCCHHHHHHHHHH
Confidence            348899999999999999999964

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=92.18  E-value=0.046  Score=39.30  Aligned_cols=21  Identities=29%  Similarity=0.458  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028792           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~   30 (203)
                      +++|+|++|+|||+|+..+..
T Consensus        45 r~~I~g~~g~GKT~l~~~i~~   65 (289)
T d1xpua3          45 RGLIVAPPKAGKTMLLQNIAQ   65 (289)
T ss_dssp             EEEEEECSSSSHHHHHHHHHH
T ss_pred             eeeEeCCCCCCHHHHHHHHHH
Confidence            789999999999999988875

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=91.26  E-value=0.063  Score=37.38  Aligned_cols=19  Identities=32%  Similarity=0.401  Sum_probs=17.3

Q ss_pred             EEEEcCCCCcHHHHHHHHh
Q 028792           11 LLLIGDSGVGKSCLLLRFA   29 (203)
Q Consensus        11 i~i~G~~~~GKSsli~~l~   29 (203)
                      ++|.|+..+|||++++++.
T Consensus        44 ~iiTGpN~~GKSt~lk~i~   62 (234)
T d1wb9a2          44 LIITGPNMGGKSTYMRQTA   62 (234)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEeccCchhhHHHHHHHH
Confidence            6899999999999999974

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=91.03  E-value=0.068  Score=36.96  Aligned_cols=19  Identities=37%  Similarity=0.499  Sum_probs=17.4

Q ss_pred             EEEEcCCCCcHHHHHHHHh
Q 028792           11 LLLIGDSGVGKSCLLLRFA   29 (203)
Q Consensus        11 i~i~G~~~~GKSsli~~l~   29 (203)
                      ++|.|+..+|||++++++.
T Consensus        38 ~iiTGpN~~GKSt~lk~i~   56 (224)
T d1ewqa2          38 VLITGPNMAGKSTFLRQTA   56 (224)
T ss_dssp             EEEESCSSSSHHHHHHHHH
T ss_pred             EEEECCCccccchhhhhhH
Confidence            6899999999999999874

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=90.62  E-value=0.076  Score=37.24  Aligned_cols=22  Identities=32%  Similarity=0.531  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028792            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      .-|+|.|++|+||+.+.+.+-.
T Consensus        24 ~pvlI~Ge~GtGK~~~A~~ih~   45 (247)
T d1ny5a2          24 CPVLITGESGVGKEVVARLIHK   45 (247)
T ss_dssp             SCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEECCCCcCHHHHHHHHHH
Confidence            3589999999999999998864

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=90.39  E-value=0.086  Score=35.10  Aligned_cols=22  Identities=27%  Similarity=0.368  Sum_probs=19.4

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCC
Q 028792           11 LLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        11 i~i~G~~~~GKSsli~~l~~~~   32 (203)
                      |+|+|...||||.+..+|....
T Consensus         2 iLVtGGarSGKS~~AE~l~~~~   23 (180)
T d1c9ka_           2 ILVTGGARSGKSRHAEALIGDA   23 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCSC
T ss_pred             EEEECCCCccHHHHHHHHHhcC
Confidence            6899999999999999997543

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=90.32  E-value=0.087  Score=37.35  Aligned_cols=20  Identities=25%  Similarity=0.411  Sum_probs=17.5

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q 028792           11 LLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        11 i~i~G~~~~GKSsli~~l~~   30 (203)
                      +.|.|++++|||+|.-.+..
T Consensus        57 tei~G~~gsGKTtl~l~~~~   76 (263)
T d1u94a1          57 VEIYGPESSGKTTLTLQVIA   76 (263)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEecCCCcHHHHHHHHHHH
Confidence            57899999999999988764

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=89.84  E-value=1.4  Score=29.65  Aligned_cols=76  Identities=11%  Similarity=0.072  Sum_probs=47.0

Q ss_pred             EEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEE-EEEeCCCCCCCcccCHHH
Q 028792           57 IKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKL-LVGNKCDLTANKVVSYET  135 (203)
Q Consensus        57 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~i-iv~nK~D~~~~~~~~~~~  135 (203)
                      +.+.++|+|+...  ......+..+|.++++...+ ..++..+......+..   .+.|++ +|+|+.+.... ....+.
T Consensus       112 ~d~IiiD~~~~~~--~~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~~~---~~~~~~giv~N~~~~~~~-~~~~~~  184 (237)
T d1g3qa_         112 FDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLKK---AGLAILGFVLNRYGRSDR-DIPPEA  184 (237)
T ss_dssp             CSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHHH---TTCEEEEEEEEEETSCTT-CCCHHH
T ss_pred             CCEEEEccccccc--ccchhhhhhhhccccccccc-ceecchhhHHHHHHhh---hhhhhhhhhhcccccccc-hhhhHH
Confidence            4578999987543  33444567899999999864 4555555555544443   256654 78999986543 334444


Q ss_pred             HHHH
Q 028792          136 AKAF  139 (203)
Q Consensus       136 ~~~~  139 (203)
                      .+.+
T Consensus       185 ~~~~  188 (237)
T d1g3qa_         185 AEDV  188 (237)
T ss_dssp             HHHH
T ss_pred             HHhh
Confidence            4333

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.73  E-value=0.15  Score=36.33  Aligned_cols=21  Identities=38%  Similarity=0.779  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028792           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~   30 (203)
                      |++++|.+|+|||+|+..+..
T Consensus        70 r~~If~~~g~GKt~l~~~i~~   90 (276)
T d2jdid3          70 KIGLFGGAGVGKTVLIMELIN   90 (276)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEeeCCCCCCHHHHHHHHHH
Confidence            689999999999999888875

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=88.45  E-value=0.15  Score=35.85  Aligned_cols=88  Identities=19%  Similarity=0.279  Sum_probs=51.5

Q ss_pred             EEEEEEeCCChhhhchh-hhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCC-CCc-EEEEEeCCCCCCCcccCH
Q 028792           57 IKLQIWDTAGQERFRTI-TSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASE-NVN-KLLVGNKCDLTANKVVSY  133 (203)
Q Consensus        57 ~~~~i~D~~g~~~~~~~-~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~-~~p-~iiv~nK~D~~~~~~~~~  133 (203)
                      +.+.++|+|+....... .......+|.++++.+. +..++..+......+...... +.+ .-++.|+.+....    .
T Consensus       116 ~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~-~~~sl~~~~~~~~~i~~~~~~~~~~~~~vv~N~~~~~~~----~  190 (269)
T d1cp2a_         116 LDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASG-EMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVANE----Y  190 (269)
T ss_dssp             CSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECS-SHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSSCC----H
T ss_pred             CCEEEeccCCccchhHHHHHHHhhccCceeeccch-hhhHHHHHHHHHHHHHhhccccceeccceEEeeecCCCc----c
Confidence            45788999864322221 22223457888777765 566666666666666554432 233 2367899876442    3


Q ss_pred             HHHHHHHHHcCCCEEE
Q 028792          134 ETAKAFADEIGIPFME  149 (203)
Q Consensus       134 ~~~~~~~~~~~~~~~~  149 (203)
                      +...++.+..+.+++.
T Consensus       191 ~~~~~~~~~~~~~~~~  206 (269)
T d1cp2a_         191 ELLDAFAKELGSQLIH  206 (269)
T ss_dssp             HHHHHHHHHHTCCEEE
T ss_pred             chhhhhHhhcCCeEEE
Confidence            4566677777776554

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=88.31  E-value=0.12  Score=32.30  Aligned_cols=19  Identities=26%  Similarity=0.167  Sum_probs=15.6

Q ss_pred             EEEEcCCCCcHHHHHHHHh
Q 028792           11 LLLIGDSGVGKSCLLLRFA   29 (203)
Q Consensus        11 i~i~G~~~~GKSsli~~l~   29 (203)
                      .++.++.|+|||.++-.+.
T Consensus        11 ~ll~apTGsGKT~~~~~~~   29 (136)
T d1a1va1          11 AHLHAPTGSGKSTKVPAAY   29 (136)
T ss_dssp             EEEECCTTSCTTTHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHH
Confidence            4678999999999886655

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=87.04  E-value=0.22  Score=33.48  Aligned_cols=24  Identities=13%  Similarity=0.092  Sum_probs=21.3

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhc
Q 028792            7 YLFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         7 ~~~~i~i~G~~~~GKSsli~~l~~   30 (203)
                      ....+++.|++|+|||++...|..
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~   37 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPE   37 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999998874

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=86.73  E-value=0.98  Score=29.54  Aligned_cols=100  Identities=16%  Similarity=0.232  Sum_probs=54.4

Q ss_pred             eeeEEEEEcC-CCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhh---------------
Q 028792            7 YLFKLLLIGD-SGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF---------------   70 (203)
Q Consensus         7 ~~~~i~i~G~-~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------------   70 (203)
                      +.+||.|+|. .+.|-+ |+..|..+.....                 ...+.++++|.+.....               
T Consensus        23 ~~~kV~I~GA~G~Ig~~-l~~~La~g~v~g~-----------------~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~   84 (175)
T d7mdha1          23 KLVNIAVSGAAGMISNH-LLFKLASGEVFGQ-----------------DQPIALKLLGSERSFQALEGVAMELEDSLYPL   84 (175)
T ss_dssp             CCEEEEEETTTSHHHHH-HHHHHHHTTTTCT-----------------TCCEEEEEECCGGGHHHHHHHHHHHHTTTCTT
T ss_pred             CCcEEEEECCCcHHHHH-HHHHHHcCcccCC-----------------CceEEEEEecCccccchhcchhhhhccccccc
Confidence            5689999996 667755 5555655443211                 11145677777663211               


Q ss_pred             ------chhhhccccCCcEEEEEEeCCChh--h-HHH-------HHHHHHHHHhhcCCCCcEEEEEeCCC
Q 028792           71 ------RTITSSYYRGAHGIIVVYDVTDQE--S-FNN-------VKQWLNEIDRYASENVNKLLVGNKCD  124 (203)
Q Consensus        71 ------~~~~~~~~~~~d~~i~v~d~~~~~--s-~~~-------~~~~~~~l~~~~~~~~p~iiv~nK~D  124 (203)
                            .......+.++|++|++-......  + .+.       ++.+.+.+.++.+.+..++++.|-.|
T Consensus        85 ~~~~~~~~~~~~~~~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~NPvd  154 (175)
T d7mdha1          85 LREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCN  154 (175)
T ss_dssp             EEEEEEESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHH
T ss_pred             ccCccccccchhhccCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecCcHH
Confidence                  001122367889999887654211  2 111       23344445555554555666777665

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=85.59  E-value=0.24  Score=35.00  Aligned_cols=38  Identities=16%  Similarity=0.239  Sum_probs=22.9

Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcE-EEEEeCC
Q 028792           82 HGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNK-LLVGNKC  123 (203)
Q Consensus        82 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~-iiv~nK~  123 (203)
                      +.+++|... ++.++.+....+..+...   +.|+ -+|+|+.
T Consensus       199 t~~~lVt~p-e~~~~~~~~r~~~~l~~~---gi~~~~vVvN~v  237 (296)
T d1ihua1         199 TRLVLVARL-QKSTLQEVARTHLELAAI---GLKNQYLVINGV  237 (296)
T ss_dssp             EEEEEEEES-CHHHHHHHHHHHHHHHHH---TCCCEEEEEEEE
T ss_pred             ceeeEecCc-chhHHHHHHHHHHHHHhc---CCCceEEEEcCC
Confidence            456666554 355666666666666655   3444 5677986

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=85.43  E-value=0.27  Score=32.92  Aligned_cols=20  Identities=20%  Similarity=0.373  Sum_probs=16.6

Q ss_pred             EEEEEcCC-CCcHHHHHHHHh
Q 028792           10 KLLLIGDS-GVGKSCLLLRFA   29 (203)
Q Consensus        10 ~i~i~G~~-~~GKSsli~~l~   29 (203)
                      ++.|.|.. ||||||+.-.|.
T Consensus         3 ~~~i~gt~~GVGKTtvs~~La   23 (224)
T d1byia_           3 RYFVTGTDTEVGKTVASCALL   23 (224)
T ss_dssp             EEEEEESSTTSCHHHHHHHHH
T ss_pred             eEEEEECCCCccHHHHHHHHH
Confidence            68899995 999999877664

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=84.80  E-value=0.28  Score=34.44  Aligned_cols=18  Identities=33%  Similarity=0.763  Sum_probs=14.0

Q ss_pred             EEEEcCCCCcHHHHHHHH
Q 028792           11 LLLIGDSGVGKSCLLLRF   28 (203)
Q Consensus        11 i~i~G~~~~GKSsli~~l   28 (203)
                      |++.|..|+||||+.-.|
T Consensus        23 ii~sGKGGVGKTT~a~nL   40 (279)
T d1ihua2          23 IMLMGKGGVGKTTMAAAI   40 (279)
T ss_dssp             EEEECSTTSSHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            355699999999976555

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=84.67  E-value=0.22  Score=35.60  Aligned_cols=21  Identities=29%  Similarity=0.469  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028792           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~   30 (203)
                      |++++|.+|+|||+|+..+..
T Consensus        70 r~~If~~~g~GKt~ll~~~~~   90 (285)
T d2jdia3          70 RELIIGDRQTGKTSIAIDTII   90 (285)
T ss_dssp             BCEEEESTTSSHHHHHHHHHH
T ss_pred             EEEeecCCCCChHHHHHHHHH
Confidence            678999999999999887764

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=84.62  E-value=0.3  Score=34.57  Aligned_cols=20  Identities=25%  Similarity=0.318  Sum_probs=17.5

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q 028792           11 LLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        11 i~i~G~~~~GKSsli~~l~~   30 (203)
                      +.+.|++++|||+|.-.+..
T Consensus        60 tei~G~~~sGKT~l~l~~~~   79 (268)
T d1xp8a1          60 TEIYGPESGGKTTLALAIVA   79 (268)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEecCCccchHHHHHHHHH
Confidence            56899999999999988764

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=84.43  E-value=0.32  Score=34.46  Aligned_cols=88  Identities=17%  Similarity=0.220  Sum_probs=47.1

Q ss_pred             EEEEEEeCCChhhhchhhhc-cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcE-EEEEeCCCCCCCcccCH
Q 028792           57 IKLQIWDTAGQERFRTITSS-YYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYAS-ENVNK-LLVGNKCDLTANKVVSY  133 (203)
Q Consensus        57 ~~~~i~D~~g~~~~~~~~~~-~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~-iiv~nK~D~~~~~~~~~  133 (203)
                      +.+.++|+|+.......... ....+|.++++.. .+..++..+......+..... .+.++ .+|.|+.+...    ..
T Consensus       119 ~D~iiiD~pp~~~~~~~~~~~~~~~a~~vlv~~~-~~~~s~~~~~~~~~~i~~~~~~~~~~~~gvv~n~~~~~~----~~  193 (289)
T d2afhe1         119 LDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCS-GEMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNTDR----ED  193 (289)
T ss_dssp             CSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEEC-SSHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCTT----HH
T ss_pred             CCeEeeccCCccCHHHHHHHHHhhccceeecccc-hhHHHHHHHHHHHHHHHhhhhcccccccceeehhhcchh----hH
Confidence            45678888764322221111 1235666666654 445566656665555544332 23443 36789886432    13


Q ss_pred             HHHHHHHHHcCCCEEE
Q 028792          134 ETAKAFADEIGIPFME  149 (203)
Q Consensus       134 ~~~~~~~~~~~~~~~~  149 (203)
                      +...++.+..+.+++.
T Consensus       194 ~~~~~~~~~~g~~vl~  209 (289)
T d2afhe1         194 ELIIALANKLGTQMIH  209 (289)
T ss_dssp             HHHHHHHHHHTSCEEE
T ss_pred             HHHHHHHHHcCCeEEE
Confidence            3455666777776654

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=84.24  E-value=0.32  Score=34.41  Aligned_cols=20  Identities=20%  Similarity=0.353  Sum_probs=17.1

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q 028792           11 LLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        11 i~i~G~~~~GKSsli~~l~~   30 (203)
                      +.+.|++++|||+|.-.+..
T Consensus        63 ~e~~G~~~~GKT~l~l~~~~   82 (269)
T d1mo6a1          63 IEIYGPESSGKTTVALHAVA   82 (269)
T ss_dssp             EEEECSSSSSHHHHHHHHHH
T ss_pred             EEEecCCCcHHHHHHHHHHH
Confidence            57899999999999877763

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=83.10  E-value=0.26  Score=35.60  Aligned_cols=14  Identities=43%  Similarity=0.688  Sum_probs=12.9

Q ss_pred             EEEcCCCCcHHHHH
Q 028792           12 LLIGDSGVGKSCLL   25 (203)
Q Consensus        12 ~i~G~~~~GKSsli   25 (203)
                      +++|.+|+|||||-
T Consensus        18 lfFGLSGTGKTTLs   31 (313)
T d2olra1          18 VFFGLSGTGKTTLS   31 (313)
T ss_dssp             EEECSTTSSHHHHH
T ss_pred             EEEccCCCCcccce
Confidence            79999999999975

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=82.94  E-value=0.73  Score=29.37  Aligned_cols=24  Identities=17%  Similarity=0.296  Sum_probs=17.3

Q ss_pred             eeeEEEEEcC-CCCcHHHHHHHHhcC
Q 028792            7 YLFKLLLIGD-SGVGKSCLLLRFADD   31 (203)
Q Consensus         7 ~~~~i~i~G~-~~~GKSsli~~l~~~   31 (203)
                      +.+||.|+|. .++|.+... .|..+
T Consensus         2 ~p~KV~IiGA~G~VG~~la~-~l~~~   26 (154)
T d5mdha1           2 EPIRVLVTGAAGQIAYSLLY-SIGNG   26 (154)
T ss_dssp             CCEEEEESSTTSHHHHTTHH-HHHTT
T ss_pred             CceEEEEECCCCHHHHHHHH-HHHHH
Confidence            4589999995 788988554 44443

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=82.57  E-value=0.27  Score=35.60  Aligned_cols=15  Identities=40%  Similarity=0.616  Sum_probs=13.4

Q ss_pred             EEEEcCCCCcHHHHH
Q 028792           11 LLLIGDSGVGKSCLL   25 (203)
Q Consensus        11 i~i~G~~~~GKSsli   25 (203)
                      -++.|.+|+|||||-
T Consensus        17 alffGLSGTGKTTLs   31 (318)
T d1j3ba1          17 AVFFGLSGTGKTTLS   31 (318)
T ss_dssp             EEEEECTTSCHHHHT
T ss_pred             EEEEccCCCCccccc
Confidence            489999999999974

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=81.83  E-value=0.45  Score=29.95  Aligned_cols=17  Identities=29%  Similarity=0.524  Sum_probs=13.8

Q ss_pred             EEEcCCCCcHHH-HHHHH
Q 028792           12 LLIGDSGVGKSC-LLLRF   28 (203)
Q Consensus        12 ~i~G~~~~GKSs-li~~l   28 (203)
                      +++||=.||||| |++++
T Consensus         6 ~i~GpMfsGKTteLi~~~   23 (139)
T d2b8ta1           6 FITGPMFAGKTAELIRRL   23 (139)
T ss_dssp             EEECSTTSCHHHHHHHHH
T ss_pred             EEEccccCHHHHHHHHHH
Confidence            568999999999 66655

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=81.70  E-value=6.3  Score=27.28  Aligned_cols=19  Identities=26%  Similarity=0.487  Sum_probs=15.4

Q ss_pred             EEEEEcCCCCcHHHHHHHH
Q 028792           10 KLLLIGDSGVGKSCLLLRF   28 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l   28 (203)
                      +|+|-|..|+||||+.-.|
T Consensus         4 ~IaisgKGGVGKTT~a~NL   22 (289)
T d2afhe1           4 QCAIYGKGGIGKSTTTQNL   22 (289)
T ss_dssp             EEEEEECTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4677899999999976554

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=81.44  E-value=0.35  Score=34.36  Aligned_cols=21  Identities=29%  Similarity=0.392  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028792           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli~~l~~   30 (203)
                      |+.|+|.+|+|||+|+..+..
T Consensus        69 r~~Ifg~~g~GKt~l~~~~~~   89 (276)
T d1fx0a3          69 RELIIGDRQTGKTAVATDTIL   89 (276)
T ss_dssp             BCBEEESSSSSHHHHHHHHHH
T ss_pred             eEeeccCCCCChHHHHHHHHh
Confidence            578999999999999877654

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=81.07  E-value=0.35  Score=35.07  Aligned_cols=15  Identities=40%  Similarity=0.614  Sum_probs=13.3

Q ss_pred             EEEEcCCCCcHHHHH
Q 028792           11 LLLIGDSGVGKSCLL   25 (203)
Q Consensus        11 i~i~G~~~~GKSsli   25 (203)
                      -+++|-+|+|||||-
T Consensus        17 alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          17 TVFFGLSGTGKTTLS   31 (323)
T ss_dssp             EEEECCTTSSHHHHH
T ss_pred             EEEEccCCCCcccce
Confidence            369999999999986

>d1zpda1 c.31.1.3 (A:188-362) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Pyruvate oxidase and decarboxylase, middle domain
domain: Pyruvate decarboxylase
species: Zymomonas mobilis [TaxId: 542]

Probab=81.04  E-value=4  Score=26.23  Aligned_cols=55  Identities=24%  Similarity=0.238  Sum_probs=37.0

Q ss_pred             CChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEe
Q 028792           91 TDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETS  151 (203)
Q Consensus        91 ~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S  151 (203)
                      +|+.+++.......  ......+.|+|+++......    -..+++.+++++.+++++.+.
T Consensus         3 sd~~~l~~~v~~~~--~~l~~AkrPvIi~G~g~~~~----~a~~~l~~lae~~~~Pv~tt~   57 (175)
T d1zpda1           3 SDEASLNAAVDETL--KFIANRDKVAVLVGSKLRAA----GAEEAAVKFTDALGGAVATMA   57 (175)
T ss_dssp             CCHHHHHHHHHHHH--HHHTTCSCEEEEECTTTTTT----TCHHHHHHHHHHHCCCEEEEG
T ss_pred             CChHHHHHHHHHHH--HHHHcCCCEEEEECcCcccc----chHHHHHHHHHhhceeEEecc
Confidence            45555554433222  22234478999999888643    346889999999999998664

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=80.73  E-value=0.26  Score=30.24  Aligned_cols=16  Identities=25%  Similarity=0.243  Sum_probs=12.8

Q ss_pred             eEEEEEcCCCCcHHHH
Q 028792            9 FKLLLIGDSGVGKSCL   24 (203)
Q Consensus         9 ~~i~i~G~~~~GKSsl   24 (203)
                      -++++.+++|+|||..
T Consensus         8 ~~~il~~~tGsGKT~~   23 (140)
T d1yksa1           8 MTTVLDFHPGAGKTRR   23 (140)
T ss_dssp             CEEEECCCTTSSTTTT
T ss_pred             CcEEEEcCCCCChhHH
Confidence            4568889999999933

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=80.47  E-value=2.7  Score=26.51  Aligned_cols=25  Identities=28%  Similarity=0.477  Sum_probs=17.4

Q ss_pred             eeEEEEEcC-CCCcHHHHHHHHhcCCC
Q 028792            8 LFKLLLIGD-SGVGKSCLLLRFADDSY   33 (203)
Q Consensus         8 ~~~i~i~G~-~~~GKSsli~~l~~~~~   33 (203)
                      .+||.|+|. .++|.+ +...|..+..
T Consensus         4 p~KV~IiGA~G~VG~~-~a~~l~~~~l   29 (154)
T d1y7ta1           4 PVRVAVTGAAGQIGYS-LLFRIAAGEM   29 (154)
T ss_dssp             CEEEEESSTTSHHHHH-HHHHHHTTTT
T ss_pred             CCEEEEECCCCHHHHH-HHHHHHhccc
Confidence            489999996 788955 5555555443

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=80.31  E-value=0.54  Score=31.01  Aligned_cols=16  Identities=25%  Similarity=0.530  Sum_probs=13.1

Q ss_pred             EEEEEcCCCCcHHHHH
Q 028792           10 KLLLIGDSGVGKSCLL   25 (203)
Q Consensus        10 ~i~i~G~~~~GKSsli   25 (203)
                      ++++.+++|+|||...
T Consensus        25 n~lv~~pTGsGKT~i~   40 (200)
T d1wp9a1          25 NCLIVLPTGLGKTLIA   40 (200)
T ss_dssp             CEEEECCTTSCHHHHH
T ss_pred             CeEEEeCCCCcHHHHH
Confidence            4788999999999643