Citrus Sinensis ID: 028798

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200---
MRQQQQTRPFNVNLLPMLLLAILACLVGSSNGSLLTPFADRPRSLLSDLWTERLADPFRVLEQIPFELERDETMALSPARVDWKETPEGHFIMLDVPGVKRDELKIEVEENRVLRVSGERKREEEKKGDQWHRVERSHGKFWRQFKLPDNVDLDSVQAKLENGVLTLSLKKLSPDQIKGPRVVGIAGGEDEPAKLQSEARQEL
cccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccEEEEcccEEEEEEEccccccccEEEEEEcccEEEEEEEEEEEEEEcccEEEEEEEEEEEEEEEEEcccccccccEEEEEcccEEEEEEccccccccccccEEEEEcccccccccHHHHHHcc
cccHcccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccEEEEEEccccccccEEEEEEcccEEEEEccccEEEcccccEEEEEEEccccEEEEEEccccccHHEEEEEEcccEEEEEEcccccccccccEEEEEEccccccccccccccccc
mrqqqqtrpfnvnLLPMLLLAILACLvgssngslltpfadrprsllsdlwterladpfrvleqipfelerdetmalsparvdwketpeghfimldvpgvkrdelkiEVEENRvlrvsgerkreeekkgdqwhrvershgkfwrqfklpdnvdldSVQAKLENGVLTLSLkklspdqikgprvvgiaggedepakLQSEARQEL
mrqqqqtrpfnVNLLPMLLLAILACLVGSSNGSLLTPFADRPRSLLSDLWTERLADPFRVLEQIPFELERDETMALSparvdwketpeghfimldvpgvkrdelkieveenrvlrvsgerkreeekkgdqwhrvershgkfwrqfklpdnVDLDSVQAKLENGVLTlslkklspdqikgPRVVGIAggedepaklqsearqel
MRQQQQTRPFNVNllpmlllailaclVGSSNGSLLTPFADRPRSLLSDLWTERLADPFRVLEQIPFELERDETMALSPARVDWKETPEGHFIMLDVPGVKRDELKIEVEENRVLRVSGerkreeekkGDQWHRVERSHGKFWRQFKLPDNVDLDSVQAKLENGVLTLSLKKLSPDQIKGPRVVGIAGGEDEPAKLQSEARQEL
*********FNVNLLPMLLLAILACLVGSSNGSLLTPFADRPRSLLSDLWTERLADPFRVLEQIPFELERDETMALSPARVDWKETPEGHFIMLDVPGVKRDELKIE*****************************SHGKFWRQFKLPDNVDLDSVQAKLENGVLTLSLK*********************************
************NLLPMLLLAILACLVG*********FADRPRSLLSDLWTERLADPFRVLEQIPFELERDETMALSPARVDWKETPEGHFIMLDVPGVKRDELKIEVEENRV********************VERSHGKFWRQFKLPDNVDLDSVQAKLENGVLTLSL**********************************
MRQQQQTRPFNVNLLPMLLLAILACLVGSSNGSLLTPFADRPRSLLSDLWTERLADPFRVLEQIPFELERDETMALSPARVDWKETPEGHFIMLDVPGVKRDELKIEVEENRVLRV****************RVERSHGKFWRQFKLPDNVDLDSVQAKLENGVLTLSLKKLSPDQIKGPRVVGIAGGED*************
******TRPFNVNLLPMLLLAILACLVGSSNGSLLTPFADRPRSLLSDLWTERLADPFRVLEQIPF****DET**LSPARVDWKETPEGHFIMLDVPGVKRDELKIEVEENRVLRVSGERKREEEKKGDQWHRVERSHGKFWRQFKLPDNVDLDSVQAKLENGVLTLSLKKLSPDQIKGPRVVGIAG****************
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MRQQQQTRPFNVNLLPMLLLAILACLVGSSNGSLLTPFADRPRSLLSDLWTERLADPFRVLEQIPFELERDETMALSPARVDWKETPEGHFIMLDVPGVKRDELKIEVEENRVLRVSGERKREEEKKGDQWHRVERSHGKFWRQFKLPDNVDLDSVQAKLENGVLTLSLKKLSPDQIKGPRVVGIAGGEDEPAKLQSEARQEL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query203 2.2.26 [Sep-21-2011]
Q38806195 22.0 kDa heat shock prote yes no 0.940 0.979 0.671 8e-70
P19244197 22.7 kDa class IV heat sh N/A no 0.935 0.964 0.661 4e-65
P30236192 22.0 kDa class IV heat sh no no 0.871 0.921 0.722 6e-64
Q7XUW5215 23.2 kDa heat shock prote yes no 0.689 0.651 0.602 6e-48
Q9LNW0157 17.8 kDa class I heat sho no no 0.758 0.980 0.426 2e-31
P04794154 17.5 kDa class I heat sho no no 0.738 0.974 0.403 1e-30
P27880158 18.2 kDa class I heat sho N/A no 0.738 0.949 0.403 2e-30
P27879143 18.1 kDa class I heat sho N/A no 0.546 0.776 0.535 2e-30
P02519153 17.3 kDa class I heat sho no no 0.729 0.967 0.419 9e-30
Q84Q77161 17.9 kDa class I heat sho no no 0.546 0.689 0.526 1e-29
>sp|Q38806|HSP22_ARATH 22.0 kDa heat shock protein OS=Arabidopsis thaliana GN=HSP22.0 PE=2 SV=1 Back     alignment and function desciption
 Score =  263 bits (671), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 129/192 (67%), Positives = 158/192 (82%), Gaps = 1/192 (0%)

Query: 13  NLLPMLLL-AILACLVGSSNGSLLTPFADRPRSLLSDLWTERLADPFRVLEQIPFELERD 71
           +LL +  + A+L   + +S GSL +     P SLLSDLW +R  DPF++LE+IP  LERD
Sbjct: 4   HLLSIFFIGALLLGNIKTSEGSLSSALETTPGSLLSDLWLDRFPDPFKILERIPLGLERD 63

Query: 72  ETMALSPARVDWKETPEGHFIMLDVPGVKRDELKIEVEENRVLRVSGERKREEEKKGDQW 131
            ++ALSPARVDWKET EGH IMLD+PG+K+DE+KIEVEEN VLRVSGERKREEEKKGDQW
Sbjct: 64  TSVALSPARVDWKETAEGHEIMLDIPGLKKDEVKIEVEENGVLRVSGERKREEEKKGDQW 123

Query: 132 HRVERSHGKFWRQFKLPDNVDLDSVQAKLENGVLTLSLKKLSPDQIKGPRVVGIAGGEDE 191
           HRVERS+GKFWRQFKLPDNVD++SV+AKLENGVLT++L KLSP+++KGPRVV IA  ED+
Sbjct: 124 HRVERSYGKFWRQFKLPDNVDMESVKAKLENGVLTINLTKLSPEKVKGPRVVNIAAEEDQ 183

Query: 192 PAKLQSEARQEL 203
            AK+ S   +EL
Sbjct: 184 TAKISSSESKEL 195

Arabidopsis thaliana (taxid: 3702)
>sp|P19244|HSP41_PEA 22.7 kDa class IV heat shock protein OS=Pisum sativum GN=HSP22.7 PE=2 SV=1 Back     alignment and function description
>sp|P30236|HSP41_SOYBN 22.0 kDa class IV heat shock protein OS=Glycine max GN=HSP22.0 PE=3 SV=1 Back     alignment and function description
>sp|Q7XUW5|HS232_ORYSJ 23.2 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP23.2 PE=2 SV=2 Back     alignment and function description
>sp|Q9LNW0|HS178_ARATH 17.8 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.8 PE=2 SV=1 Back     alignment and function description
>sp|P04794|HSP14_SOYBN 17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-E PE=3 SV=1 Back     alignment and function description
>sp|P27880|HSP12_MEDSA 18.2 kDa class I heat shock protein OS=Medicago sativa GN=HSP18.2 PE=2 SV=1 Back     alignment and function description
>sp|P27879|HSP11_MEDSA 18.1 kDa class I heat shock protein (Fragment) OS=Medicago sativa GN=HSP18.1 PE=2 SV=1 Back     alignment and function description
>sp|P02519|HSP11_SOYBN 17.3 kDa class I heat shock protein OS=Glycine max GN=HSP17.3-B PE=3 SV=1 Back     alignment and function description
>sp|Q84Q77|HS17A_ORYSJ 17.9 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.9A PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query203
297809237195 ATHSP22.0 [Arabidopsis lyrata subsp. lyr 0.940 0.979 0.682 2e-69
341872719197 HSP22 [Brassica rapa subsp. pekinensis] 0.926 0.954 0.687 6e-69
341872727197 HSP22 [Brassica napus] 0.926 0.954 0.687 7e-69
342240195197 HSP22 [Brassica oleracea] 0.926 0.954 0.687 8e-69
341872715197 HSP22 [Capsella bursa-pastoris] 0.926 0.954 0.687 1e-68
341872725197 HSP22 [Brassica napus] 0.926 0.954 0.682 4e-68
15234985195 heat shock protein 22 [Arabidopsis thali 0.940 0.979 0.671 4e-68
341872717197 HSP22 [Brassica juncea] gi|341872729|gb| 0.935 0.964 0.675 5e-68
341872733197 HSP22 [Raphanus sativus] 0.935 0.964 0.670 6e-67
224126627192 predicted protein [Populus trichocarpa] 0.886 0.937 0.737 1e-65
>gi|297809237|ref|XP_002872502.1| ATHSP22.0 [Arabidopsis lyrata subsp. lyrata] gi|297318339|gb|EFH48761.1| ATHSP22.0 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
 Score =  267 bits (683), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 131/192 (68%), Positives = 160/192 (83%), Gaps = 1/192 (0%)

Query: 13  NLLPMLLL-AILACLVGSSNGSLLTPFADRPRSLLSDLWTERLADPFRVLEQIPFELERD 71
           +LL +  + A+L   + +S GSL +     P SLLSDLW +R  DPF++LE+IP ELERD
Sbjct: 4   HLLSIFFIGALLLGNIKTSEGSLSSALETTPGSLLSDLWLDRFPDPFKILERIPLELERD 63

Query: 72  ETMALSPARVDWKETPEGHFIMLDVPGVKRDELKIEVEENRVLRVSGERKREEEKKGDQW 131
            ++ALSPARVDWKET EGH I+LDVPG+K+DE+KIEVEENRVLRVSGERKREEEKKGDQW
Sbjct: 64  TSVALSPARVDWKETAEGHEILLDVPGLKKDEVKIEVEENRVLRVSGERKREEEKKGDQW 123

Query: 132 HRVERSHGKFWRQFKLPDNVDLDSVQAKLENGVLTLSLKKLSPDQIKGPRVVGIAGGEDE 191
           HRVERS+GKFWRQFKLPDNVD++SV+AKLENGVLT++L KLSP+++KGPRVV IA  ED+
Sbjct: 124 HRVERSYGKFWRQFKLPDNVDMESVKAKLENGVLTINLTKLSPEKVKGPRVVNIAAEEDQ 183

Query: 192 PAKLQSEARQEL 203
            AK+ S   +EL
Sbjct: 184 TAKISSSESKEL 195

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|341872719|gb|AEL00028.1| HSP22 [Brassica rapa subsp. pekinensis] gi|341872721|gb|AEL00029.1| HSP22 [Brassica rapa subsp. chinensis] gi|341872723|gb|AEL00030.1| HSP22 [Brassica oleracea var. capitata] Back     alignment and taxonomy information
>gi|341872727|gb|AEL00032.1| HSP22 [Brassica napus] Back     alignment and taxonomy information
>gi|342240195|gb|AEL00036.1| HSP22 [Brassica oleracea] Back     alignment and taxonomy information
>gi|341872715|gb|AEL00026.1| HSP22 [Capsella bursa-pastoris] Back     alignment and taxonomy information
>gi|341872725|gb|AEL00031.1| HSP22 [Brassica napus] Back     alignment and taxonomy information
>gi|15234985|ref|NP_192763.1| heat shock protein 22 [Arabidopsis thaliana] gi|75281779|sp|Q38806.1|HSP22_ARATH RecName: Full=22.0 kDa heat shock protein; Short=AtHsp22.0; Flags: Precursor gi|511796|gb|AAA19931.1| AtHSP22.0 [Arabidopsis thaliana] gi|3695402|gb|AAC62802.1| contains similarity to heat shock hsp20 proteins (Pfam: PF00011, E=1.2e-46 [Arabidopsis thaliana] gi|4538954|emb|CAB39778.1| heat shock protein 22.0 [Arabidopsis thaliana] gi|7267721|emb|CAB78148.1| heat shock protein 22.0 [Arabidopsis thaliana] gi|28466919|gb|AAO44068.1| At4g10250 [Arabidopsis thaliana] gi|110743833|dbj|BAE99751.1| heat shock protein 22.0 [Arabidopsis thaliana] gi|332657459|gb|AEE82859.1| heat shock protein 22 [Arabidopsis thaliana] gi|1094856|prf||2106413A small heat shock protein Back     alignment and taxonomy information
>gi|341872717|gb|AEL00027.1| HSP22 [Brassica juncea] gi|341872729|gb|AEL00033.1| HSP22 [Brassica juncea] gi|341872731|gb|AEL00034.1| HSP22 [Brassica juncea] Back     alignment and taxonomy information
>gi|341872733|gb|AEL00035.1| HSP22 [Raphanus sativus] Back     alignment and taxonomy information
>gi|224126627|ref|XP_002319884.1| predicted protein [Populus trichocarpa] gi|222858260|gb|EEE95807.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query203
TAIR|locus:2122774195 ATHSP22.0 "AT4G10250" [Arabido 0.871 0.907 0.655 8.1e-60
UNIPROTKB|Q7XUW5215 HSP23.2 "23.2 kDa heat shock p 0.669 0.632 0.577 9.3e-43
UNIPROTKB|Q943E7149 HSP16.9C "16.9 kDa class I hea 0.650 0.885 0.467 3.9e-28
TAIR|locus:2024997157 AT1G07400 [Arabidopsis thalian 0.674 0.872 0.455 3.9e-28
UNIPROTKB|P27777150 HSP16.9A "16.9 kDa class I hea 0.689 0.933 0.451 5e-28
UNIPROTKB|Q943E6150 HSP16.9B "16.9 kDa class I hea 0.689 0.933 0.444 8.2e-28
UNIPROTKB|Q53M11206 HSP21.9 "21.9 kDa heat shock p 0.738 0.728 0.410 3.5e-27
TAIR|locus:2042977153 AT2G29500 "AT2G29500" [Arabido 0.645 0.856 0.455 3.5e-27
UNIPROTKB|P31673154 HSP17.4 "17.4 kDa class I heat 0.694 0.915 0.420 1.9e-26
UNIPROTKB|Q84Q72161 HSP18.1 "18.1 kDa class I heat 0.556 0.701 0.478 1.9e-26
TAIR|locus:2122774 ATHSP22.0 "AT4G10250" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 613 (220.8 bits), Expect = 8.1e-60, P = 8.1e-60
 Identities = 116/177 (65%), Positives = 141/177 (79%)

Query:    27 VGSSNGSLLTPFADRPRSLLSDLWTERLADPFRVLEQIPFELERDETMALSPARVDWKET 86
             + +S GSL +     P SLLSDLW +R  DPF++LE+IP  LERD ++ALSPARVDWKET
Sbjct:    19 IKTSEGSLSSALETTPGSLLSDLWLDRFPDPFKILERIPLGLERDTSVALSPARVDWKET 78

Query:    87 PEGHFIMLDVPGVKRDELKIEVEENRVLRVSGXXXXXXXXXGDQWHRVERSHGKFWRQFK 146
              EGH IMLD+PG+K+DE+KIEVEEN VLRVSG         GDQWHRVERS+GKFWRQFK
Sbjct:    79 AEGHEIMLDIPGLKKDEVKIEVEENGVLRVSGERKREEEKKGDQWHRVERSYGKFWRQFK 138

Query:   147 LPDNVDLDSVQAKLENGVLTLSLKKLSPDQIKGPRVVGIAGGEDEPAKLQSEARQEL 203
             LPDNVD++SV+AKLENGVLT++L KLSP+++KGPRVV IA  ED+ AK+ S   +EL
Sbjct:   139 LPDNVDMESVKAKLENGVLTINLTKLSPEKVKGPRVVNIAAEEDQTAKISSSESKEL 195
GO:0003674 "molecular_function" evidence=ND
GO:0009408 "response to heat" evidence=IEP;ISS;RCA
GO:0009507 "chloroplast" evidence=ISM
GO:0006457 "protein folding" evidence=RCA
GO:0009644 "response to high light intensity" evidence=RCA
GO:0042542 "response to hydrogen peroxide" evidence=RCA
GO:0005783 "endoplasmic reticulum" evidence=IDA
UNIPROTKB|Q7XUW5 HSP23.2 "23.2 kDa heat shock protein" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q943E7 HSP16.9C "16.9 kDa class I heat shock protein 3" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2024997 AT1G07400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P27777 HSP16.9A "16.9 kDa class I heat shock protein 1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q943E6 HSP16.9B "16.9 kDa class I heat shock protein 2" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q53M11 HSP21.9 "21.9 kDa heat shock protein" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2042977 AT2G29500 "AT2G29500" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P31673 HSP17.4 "17.4 kDa class I heat shock protein" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q84Q72 HSP18.1 "18.1 kDa class I heat shock protein" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q38806HSP22_ARATHNo assigned EC number0.67180.94080.9794yesno
P30236HSP41_SOYBNNo assigned EC number0.72220.87190.9218nono
P19244HSP41_PEANo assigned EC number0.66140.93590.9644N/Ano
Q7XUW5HS232_ORYSJNo assigned EC number0.60270.68960.6511yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh2_kg.6__3003__AT4G10250.1
annotation not avaliable (195 aa)
(Arabidopsis lyrata)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query203
cd0647292 cd06472, ACD_ScHsp26_like, Alpha crystallin domain 4e-47
pfam00011101 pfam00011, HSP20, Hsp20/alpha crystallin family 8e-34
cd0646488 cd06464, ACD_sHsps-like, Alpha-crystallin domain ( 3e-32
COG0071146 COG0071, IbpA, Molecular chaperone (small heat sho 5e-28
cd0029880 cd00298, ACD_sHsps_p23-like, This domain family in 1e-24
cd0647193 cd06471, ACD_LpsHSP_like, Group of bacterial prote 2e-19
cd0647090 cd06470, ACD_IbpA-B_like, Alpha-crystallin domain 6e-13
cd0652683 cd06526, metazoan_ACD, Alpha-crystallin domain (AC 2e-10
PRK10743137 PRK10743, PRK10743, heat shock protein IbpA; Provi 0.001
cd0648187 cd06481, ACD_HspB9_like, Alpha crystallin domain ( 0.002
>gnl|CDD|107229 cd06472, ACD_ScHsp26_like, Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins Back     alignment and domain information 
 Score =  149 bits (379), Expect = 4e-47
 Identities = 62/92 (67%), Positives = 78/92 (84%)

Query: 80  RVDWKETPEGHFIMLDVPGVKRDELKIEVEENRVLRVSGERKREEEKKGDQWHRVERSHG 139
           RVDWKETPE H    DVPGVK++++K+EVE+ RVLR+SGERK+EEEKKGD WHRVERS G
Sbjct: 1   RVDWKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSG 60

Query: 140 KFWRQFKLPDNVDLDSVQAKLENGVLTLSLKK 171
           +F R+F+LP+N D D V+A LENGVLT+++ K
Sbjct: 61  RFVRRFRLPENADADEVKAFLENGVLTVTVPK 92

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative stress. Also belonging to this group is wheat HSP16.9 which differs in quaternary structure from the shell-type particles of ScHsp26, it assembles as a dodecameric double disc, with each disc organized as a trimer of dimers. Length = 92
>gnl|CDD|215655 pfam00011, HSP20, Hsp20/alpha crystallin family Back     alignment and domain information
>gnl|CDD|107221 cd06464, ACD_sHsps-like, Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps) Back     alignment and domain information
>gnl|CDD|223149 COG0071, IbpA, Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|107219 cd00298, ACD_sHsps_p23-like, This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins Back     alignment and domain information
>gnl|CDD|107228 cd06471, ACD_LpsHSP_like, Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18 Back     alignment and domain information
>gnl|CDD|107227 cd06470, ACD_IbpA-B_like, Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins Back     alignment and domain information
>gnl|CDD|107247 cd06526, metazoan_ACD, Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps) Back     alignment and domain information
>gnl|CDD|182691 PRK10743, PRK10743, heat shock protein IbpA; Provisional Back     alignment and domain information
>gnl|CDD|107236 cd06481, ACD_HspB9_like, Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 203
PRK10743137 heat shock protein IbpA; Provisional 99.95
PRK11597142 heat shock chaperone IbpB; Provisional 99.95
COG0071146 IbpA Molecular chaperone (small heat shock protein 99.95
cd0647292 ACD_ScHsp26_like Alpha crystallin domain (ACD) fou 99.94
PF00011102 HSP20: Hsp20/alpha crystallin family This prints e 99.92
cd0647193 ACD_LpsHSP_like Group of bacterial proteins contai 99.91
cd0647090 ACD_IbpA-B_like Alpha-crystallin domain (ACD) foun 99.91
cd0649786 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domai 99.89
cd0647883 ACD_HspB4-5-6 Alpha-crystallin domain found in alp 99.88
cd0649884 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domai 99.88
cd0647981 ACD_HspB7_like Alpha crystallin domain (ACD) found 99.87
cd0647683 ACD_HspB2_like Alpha crystallin domain (ACD) found 99.86
cd0648187 ACD_HspB9_like Alpha crystallin domain (ACD) found 99.86
cd0647586 ACD_HspB1_like Alpha crystallin domain (ACD) found 99.85
cd0648287 ACD_HspB10 Alpha crystallin domain (ACD) found in 99.84
cd0646488 ACD_sHsps-like Alpha-crystallin domain (ACD) of al 99.84
cd0647783 ACD_HspB3_Like Alpha crystallin domain (ACD) found 99.83
cd0652683 metazoan_ACD Alpha-crystallin domain (ACD) of meta 99.82
KOG3591173 consensus Alpha crystallins [Posttranslational mod 99.77
cd0648091 ACD_HspB8_like Alpha-crystallin domain (ACD) found 99.75
KOG0710196 consensus Molecular chaperone (small heat-shock pr 99.74
cd0029880 ACD_sHsps_p23-like This domain family includes the 99.52
cd0646978 p23_DYX1C1_like p23_like domain found in proteins 99.26
PF05455177 GvpH: GvpH; InterPro: IPR008633 This family consis 98.94
cd0646384 p23_like Proteins containing this p23_like domain 98.93
cd0646684 p23_CS_SGT1_like p23_like domain similar to the C- 98.67
PF0496979 CS: CS domain; InterPro: IPR017447 The function of 98.42
cd06465108 p23_hB-ind1_like p23_like domain found in human (h 98.01
PF08190328 PIH1: pre-RNA processing PIH1/Nop17 97.95
cd0648984 p23_CS_hSgt1_like p23_like domain similar to the C 97.89
cd0646785 p23_NUDC_like p23_like domain of NUD (nuclear dist 97.7
cd0646892 p23_CacyBP p23_like domain found in proteins simil 97.62
cd0648887 p23_melusin_like p23_like domain similar to the C- 97.62
cd0649385 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear 97.47
cd00237106 p23 p23 binds heat shock protein (Hsp)90 and parti 97.07
cd0649493 p23_NUDCD2_like p23-like NUD (nuclear distribution 96.92
PLN03088356 SGT1, suppressor of G2 allele of SKP1; Provisional 96.48
KOG1309196 consensus Suppressor of G2 allele of skp1 [Signal 96.41
cd0649087 p23_NCB5OR p23_like domain found in NAD(P)H cytoch 95.96
cd0649287 p23_mNUDC_like p23-like NUD (nuclear distribution) 95.33
cd06495102 p23_NUDCD3_like p23-like NUD (nuclear distribution 94.45
KOG3158180 consensus HSP90 co-chaperone p23 [Posttranslationa 87.48
PF13349166 DUF4097: Domain of unknown function (DUF4097) 85.16
PF14913194 DPCD: DPCD protein family 85.03
cd0648287 ACD_HspB10 Alpha crystallin domain (ACD) found in 80.58
>PRK10743 heat shock protein IbpA; Provisional Back     alignment and domain information 
Probab=99.95  E-value=1.5e-27  Score=185.17  Aligned_cols=102  Identities=27%  Similarity=0.446  Sum_probs=90.4

Q ss_pred             ceeeEEE-CCCeEEEEEEeCCCCCcceEEEEEcCeEEEEEeEEeeeeeccCCeEEEEeeeeeEEEEEEECCCCcccCCeE
Q 028798           79 ARVDWKE-TPEGHFIMLDVPGVKRDELKIEVEENRVLRVSGERKREEEKKGDQWHRVERSHGKFWRQFKLPDNVDLDSVQ  157 (203)
Q Consensus        79 p~~di~e-~~d~y~i~~~LPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~i~  157 (203)
                      |++||++ ++++|.|+++|||++++||+|++++| +|+|+|+++.+.  ++.+|+++||++|+|+|+|.||++||.+  +
T Consensus        35 p~~di~ee~~~~~~v~aelPGv~kedi~V~v~~~-~LtI~ge~~~~~--~~~~~~~~Er~~g~F~R~~~LP~~Vd~~--~  109 (137)
T PRK10743         35 PPYNVELVDENHYRIAIAVAGFAESELEITAQDN-LLVVKGAHADEQ--KERTYLYQGIAERNFERKFQLAENIHVR--G  109 (137)
T ss_pred             CcEEEEEcCCCEEEEEEECCCCCHHHeEEEEECC-EEEEEEEECccc--cCCcEEEEEEECCEEEEEEECCCCcccC--c
Confidence            6799994 89999999999999999999999987 799999976542  4567999999999999999999999999  5


Q ss_pred             EEEECCEEEEEEeccCCCCCCCCeEEEec
Q 028798          158 AKLENGVLTLSLKKLSPDQIKGPRVVGIA  186 (203)
Q Consensus       158 A~~~dGvL~I~lPK~~~~~~~~~r~I~I~  186 (203)
                      |+|+||||+|++||..++..+ +|+|+|+
T Consensus       110 A~~~dGVL~I~lPK~~~~~~~-~r~I~I~  137 (137)
T PRK10743        110 ANLVNGLLYIDLERVIPEAKK-PRRIEIN  137 (137)
T ss_pred             CEEeCCEEEEEEeCCCccccC-CeEEeeC
Confidence            999999999999997554434 8999984

>PRK11597 heat shock chaperone IbpB; Provisional Back     alignment and domain information
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins Back     alignment and domain information
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry Back     alignment and domain information
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18 Back     alignment and domain information
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins Back     alignment and domain information
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa) Back     alignment and domain information
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20 Back     alignment and domain information
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa) Back     alignment and domain information
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins Back     alignment and domain information
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins Back     alignment and domain information
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins Back     alignment and domain information
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins Back     alignment and domain information
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins Back     alignment and domain information
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps) Back     alignment and domain information
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins Back     alignment and domain information
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps) Back     alignment and domain information
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21 Back     alignment and domain information
>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins Back     alignment and domain information
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1 Back     alignment and domain information
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [] Back     alignment and domain information
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1 Back     alignment and domain information
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1) Back     alignment and domain information
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown Back     alignment and domain information
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins Back     alignment and domain information
>PF08190 PIH1: pre-RNA processing PIH1/Nop17 Back     alignment and domain information
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins Back     alignment and domain information
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins Back     alignment and domain information
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP) Back     alignment and domain information
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins Back     alignment and domain information
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins Back     alignment and domain information
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor Back     alignment and domain information
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins Back     alignment and domain information
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional Back     alignment and domain information
>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms] Back     alignment and domain information
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins Back     alignment and domain information
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins Back     alignment and domain information
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins Back     alignment and domain information
>KOG3158 consensus HSP90 co-chaperone p23 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13349 DUF4097: Domain of unknown function (DUF4097) Back     alignment and domain information
>PF14913 DPCD: DPCD protein family Back     alignment and domain information
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query203
1gme_A151 Crystal Structure And Assembly Of An Eukaryotic Sma 3e-21
2byu_A101 Negative Stain Em Reconstruction Of M.Tuberculosis 2e-17
2h50_A93 Multiple Distinct Assemblies Reveal Conformational 4e-17
3gla_A100 Crystal Structure Of The Hspa From Xanthomonas Axon 2e-09
3gt6_A103 Crystal Structure Of The Hspa From Xanthomonas Axon 2e-09
4fei_A102 Hsp17.7 From Deinococcus Radiodurans Length = 102 1e-05
>pdb|1GME|A Chain A, Crystal Structure And Assembly Of An Eukaryotic Small Heat Shock Protein Length = 151 Back     alignment and structure 
Iteration: 1

 Score = 98.2 bits (243), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 64/142 (45%), Positives = 87/142 (61%), Gaps = 9/142 (6%)
Query: 46  LSDLWTERLADPFRVLEQIPFELER--DETMALSPARVDWKETPEGHFIMLDVPGVKRDE 103
            +DLW    ADPF     I   +     ET A + AR+DWKETPE H    D+PGVK++E
Sbjct: 13  FADLW----ADPFDTFRSIVPAISGGGSETAAFANARMDWKETPEAHVFKADLPGVKKEE 68
Query: 104 LKIEVEENRVLRVSGXXXXXXXXXGDQWHRVERSHGKFWRQFKLPDNVDLDSVQAKLENG 163
           +K+EVE+  VL VSG          D+WHRVERS GKF R+F+L ++  ++ V+A LENG
Sbjct: 69  VKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENG 128
Query: 164 VLTLSLKKLSPDQIKGPRVVGI 185
           VLT+++ K    ++K P V  I
Sbjct: 129 VLTVTVPKA---EVKKPEVKAI 147
>pdb|2BYU|A Chain A, Negative Stain Em Reconstruction Of M.Tuberculosis Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer Length = 101 Back     alignment and structure
>pdb|2H50|A Chain A, Multiple Distinct Assemblies Reveal Conformational Flexibility In The Small Heat Shock Protein Hsp26 Length = 93 Back     alignment and structure
>pdb|3GLA|A Chain A, Crystal Structure Of The Hspa From Xanthomonas Axonopodis Length = 100 Back     alignment and structure
>pdb|3GT6|A Chain A, Crystal Structure Of The Hspa From Xanthomonas Axonopodis Length = 103 Back     alignment and structure
>pdb|4FEI|A Chain A, Hsp17.7 From Deinococcus Radiodurans Length = 102 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query203
1gme_A151 Heat shock protein 16.9B; small heat shock protein 1e-50
3gla_A100 Low molecular weight heat shock protein; HSPA, SHP 5e-44
3aab_A123 Putative uncharacterized protein ST1653; alpha-cry 3e-38
4eld_A161 MJ16.5-P1, small heat shock protein HSP16.5; chape 8e-38
3q9p_A85 Heat shock protein beta-1; alpha-crystallin domain 3e-18
3l1e_A106 Alpha-crystallin A chain; lens transparency, polyd 4e-18
2wj5_A101 Heat shock protein beta-6; chaperone, disulfide bo 5e-18
2klr_A175 Alpha-crystallin B chain; protein, dimer, oligomer 6e-17
2bol_A314 TSP36, small heat shock protein; A-crystallin, mol 2e-16
2bol_A314 TSP36, small heat shock protein; A-crystallin, mol 2e-10
2y1y_A90 Alpha-crystallin B chain,; small heat shock protei 1e-15
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-09
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone, alpha-crystallin; 2.70A {Triticum aestivum} SCOP: b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A Length = 151 Back     alignment and structure
 Score =  160 bits (406), Expect = 1e-50
 Identities = 67/147 (45%), Positives = 96/147 (65%), Gaps = 3/147 (2%)

Query: 43  RSLLSDLWTERLADPFRVLEQI--PFELERDETMALSPARVDWKETPEGHFIMLDVPGVK 100
           RS + D + +  ADPF     I         ET A + AR+DWKETPE H    D+PGVK
Sbjct: 6   RSNVFDPFADLWADPFDTFRSIVPAISGGGSETAAFANARMDWKETPEAHVFKADLPGVK 65

Query: 101 RDELKIEVEENRVLRVSGERKREEEKKGDQWHRVERSHGKFWRQFKLPDNVDLDSVQAKL 160
           ++E+K+EVE+  VL VSGER +E+E K D+WHRVERS GKF R+F+L ++  ++ V+A L
Sbjct: 66  KEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGL 125

Query: 161 ENGVLTLSLKKLSPDQIKGPRVVGIAG 187
           ENGVLT+++ K    + +  + + I+G
Sbjct: 126 ENGVLTVTVPKAEVKKPE-VKAIQISG 151
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A Length = 100 Back     alignment and structure
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain, chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A Length = 123 Back     alignment and structure
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A Length = 161 Back     alignment and structure
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A Length = 85 Back     alignment and structure
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A Length = 106 Back     alignment and structure
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus} Length = 101 Back     alignment and structure
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity, intermolecular INTE chaperone, SHSP, human, small heat-shock protein, cataract; NMR {Homo sapiens} PDB: 2ygd_A Length = 175 Back     alignment and structure
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata} Length = 314 Back     alignment and structure
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata} Length = 314 Back     alignment and structure
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone, stress protein, eye LEN protein, cataract; HET: MSE; 2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A Length = 90 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query203
1gme_A151 Heat shock protein 16.9B; small heat shock protein 99.96
4eld_A161 MJ16.5-P1, small heat shock protein HSP16.5; chape 99.96
3gla_A100 Low molecular weight heat shock protein; HSPA, SHP 99.95
4fei_A102 Heat shock protein-related protein; stress respons 99.93
3aab_A123 Putative uncharacterized protein ST1653; alpha-cry 99.92
3l1e_A106 Alpha-crystallin A chain; lens transparency, polyd 99.92
2klr_A175 Alpha-crystallin B chain; protein, dimer, oligomer 99.91
2wj5_A101 Heat shock protein beta-6; chaperone, disulfide bo 99.91
3q9p_A85 Heat shock protein beta-1; alpha-crystallin domain 99.88
2y1y_A90 Alpha-crystallin B chain,; small heat shock protei 99.87
2bol_A314 TSP36, small heat shock protein; A-crystallin, mol 99.85
2bol_A314 TSP36, small heat shock protein; A-crystallin, mol 99.82
2xcm_C92 SGT1-like protein, cytosolic heat shock protein 90 98.95
1rl1_A114 Suppressor of G2 allele of SKP1 homolog; beta sand 98.94
3eud_A115 Protein SHQ1; CS domain HSP20-like domain SHQ1 H/A 98.23
2k8q_A134 Protein SHQ1; beta-sandwich, CS domain, nucleus, s 98.23
3igf_A374 ALL4481 protein; two-domained protein consisting o 98.08
1x5m_A127 Calcyclin-binding protein; CS domain, structural g 97.7
1wh0_A134 Ubiquitin carboxyl-terminal hydrolase 19; USP, CS 97.63
1wgv_A124 KIAA1068 protein; CS domain, HSP20-like fold, stru 97.54
1ejf_A125 Progesterone receptor P23; chaperone, CO-chaperone 97.5
3qor_A121 Nuclear migration protein NUDC; beta-sandwich, cha 97.45
1wfi_A131 Nuclear distribution gene C homolog; NUDC, riken s 97.24
2rh0_A157 NUDC domain-containing protein 2; 13542905, nuclea 97.12
2o30_A131 Nuclear movement protein; MCSG, structural genomic 97.09
2kmw_A150 Uncharacterized protein AT3G03773; protein structu 96.81
2cg9_X134 CO-chaperone protein SBA1; chaperone complex, HSP9 96.67
4eld_A161 MJ16.5-P1, small heat shock protein HSP16.5; chape 91.65
3q9p_A85 Heat shock protein beta-1; alpha-crystallin domain 81.66
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone, alpha-crystallin; 2.70A {Triticum aestivum} SCOP: b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A Back     alignment and structure
Probab=99.96  E-value=7.9e-30  Score=199.90  Aligned_cols=109  Identities=50%  Similarity=0.879  Sum_probs=98.3

Q ss_pred             CCceeeEEECCCeEEEEEEeCCCCCcceEEEEEcCeEEEEEeEEeeeeeccCCeEEEEeeeeeEEEEEEECCCCcccCCe
Q 028798           77 SPARVDWKETPEGHFIMLDVPGVKRDELKIEVEENRVLRVSGERKREEEKKGDQWHRVERSHGKFWRQFKLPDNVDLDSV  156 (203)
Q Consensus        77 ~~p~~di~e~~d~y~i~~~LPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~i  156 (203)
                      ..|+++|+|++++|+|.++|||++++||+|++++++.|+|+|+++.+.+.++.+|+++||++|+|+|+|.||.+||.++|
T Consensus        42 ~~p~~di~e~~d~~~v~~dlPGv~kedI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~Er~~g~F~R~~~LP~~vd~~~i  121 (151)
T 1gme_A           42 ANARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEV  121 (151)
T ss_dssp             GGGCEEEEECSSEEEEEEECTTCCGGGEEEEEETTTEEEEEECCCCCCCCTTCEEEECCCCCCCEEEEEECSSCCCGGGC
T ss_pred             cCCceEEEEcCCEEEEEEECCCCChHHEEEEEecCCEEEEEEEEccccccCCceEEEEeEeccEEEEEEECCCCccccce
Confidence            34789999999999999999999999999999644479999999877777788999999999999999999999999999


Q ss_pred             EEEEECCEEEEEEeccCCCCCCCCeEEEec
Q 028798          157 QAKLENGVLTLSLKKLSPDQIKGPRVVGIA  186 (203)
Q Consensus       157 ~A~~~dGvL~I~lPK~~~~~~~~~r~I~I~  186 (203)
                      +|+|+||+|+|++||....+++ .++|+|+
T Consensus       122 ~A~~~nGvL~I~lPK~~~~~~~-~~~I~I~  150 (151)
T 1gme_A          122 KAGLENGVLTVTVPKAEVKKPE-VKAIQIS  150 (151)
T ss_dssp             EEEEETTEEEEEEECCCCCTTC-CCCCCCC
T ss_pred             EEEEECCEEEEEEEccCcCCCC-CeEeeeC
Confidence            9999999999999999876643 5778875
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A Back     alignment and structure
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A Back     alignment and structure
>4fei_A Heat shock protein-related protein; stress response, alpha-crystallin domain fold, aggregates, C chaperone; 2.40A {Deinococcus radiodurans} Back     alignment and structure
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain, chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A Back     alignment and structure
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A Back     alignment and structure
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity, intermolecular INTE chaperone, SHSP, human, small heat-shock protein, cataract; NMR {Homo sapiens} PDB: 2ygd_A Back     alignment and structure
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus} Back     alignment and structure
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A Back     alignment and structure
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone, stress protein, eye LEN protein, cataract; HET: MSE; 2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A Back     alignment and structure
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata} Back     alignment and structure
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata} Back     alignment and structure
>2xcm_C SGT1-like protein, cytosolic heat shock protein 90; chaperone-protein binding complex, stress response; HET: ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S* Back     alignment and structure
>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta strands, similar to P23, lacking LAST beta strand SEEN in P23, protein degradation; NMR {Homo sapiens} SCOP: b.15.1.3 Back     alignment and structure
>3eud_A Protein SHQ1; CS domain HSP20-like domain SHQ1 H/ACA snoRNP ribosome biogenesis, nucleus, nuclear protein; HET: MSE; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2k8q_A Protein SHQ1; beta-sandwich, CS domain, nucleus, structural protein; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP} Back     alignment and structure
>1x5m_A Calcyclin-binding protein; CS domain, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1wh0_A Ubiquitin carboxyl-terminal hydrolase 19; USP, CS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.15.1.3 Back     alignment and structure
>1wgv_A KIAA1068 protein; CS domain, HSP20-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.15.1.4 Back     alignment and structure
>1ejf_A Progesterone receptor P23; chaperone, CO-chaperone, beta-sandwich; 2.49A {Homo sapiens} SCOP: b.15.1.2 Back     alignment and structure
>3qor_A Nuclear migration protein NUDC; beta-sandwich, chaperone, protein cell cycle; HET: OCS; 1.75A {Homo sapiens} PDB: 3qor_B* 2cr0_A Back     alignment and structure
>1wfi_A Nuclear distribution gene C homolog; NUDC, riken structural genomics/proteomics initiative, RSGI, structural genomics, transport protein; NMR {Mus musculus} SCOP: b.15.1.4 Back     alignment and structure
>2rh0_A NUDC domain-containing protein 2; 13542905, nuclear movement protein, structural genomics, joint center for structural genomics, JCSG; 1.95A {Mus musculus} Back     alignment and structure
>2o30_A Nuclear movement protein; MCSG, structural genomics, PSI-2, structure initiative; 1.66A {Encephalitozoon cuniculi} Back     alignment and structure
>2kmw_A Uncharacterized protein AT3G03773; protein structure initiative, center for eukaryotic structural genomics, CESG, structural genomics; NMR {Arabidopsis thaliana} Back     alignment and structure
>2cg9_X CO-chaperone protein SBA1; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae} Back     alignment and structure
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A Back     alignment and structure
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 203
d1gmea_150 b.15.1.1 (A:) Small heat shock protein {Wheat (Tri 2e-33
d1shsa_115 b.15.1.1 (A:) Small heat shock protein {Archaeon M 3e-21
d1rl1a_92 b.15.1.3 (A:) Suppressor of G2 allele of skp1 homo 0.003
>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum aestivum) [TaxId: 4565]} Length = 150 Back     information, alignment and structure

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: HSP20
domain: Small heat shock protein
species: Wheat (Triticum aestivum) [TaxId: 4565]

 Score =  115 bits (288), Expect = 2e-33
 Identities = 67/147 (45%), Positives = 97/147 (65%), Gaps = 3/147 (2%)

Query: 43  RSLLSDLWTERLADPFRVLEQIPFELE--RDETMALSPARVDWKETPEGHFIMLDVPGVK 100
           RS + D + +  ADPF     I   +     ET A + AR+DWKETPE H    D+PGVK
Sbjct: 5   RSNVFDPFADLWADPFDTFRSIVPAISGGGSETAAFANARMDWKETPEAHVFKADLPGVK 64

Query: 101 RDELKIEVEENRVLRVSGERKREEEKKGDQWHRVERSHGKFWRQFKLPDNVDLDSVQAKL 160
           ++E+K+EVE+  VL VSGER +E+E K D+WHRVERS GKF R+F+L ++  ++ V+A L
Sbjct: 65  KEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGL 124

Query: 161 ENGVLTLSLKKLSPDQIKGPRVVGIAG 187
           ENGVLT+++ K    + +  + + I+G
Sbjct: 125 ENGVLTVTVPKAEVKKPE-VKAIQISG 150
>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 115 Back     information, alignment and structure
>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog, gst1 {Human (Homo sapiens) [TaxId: 9606]} Length = 92 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query203
d1gmea_150 Small heat shock protein {Wheat (Triticum aestivum 99.97
d1shsa_115 Small heat shock protein {Archaeon Methanococcus j 99.92
d1rl1a_92 Suppressor of G2 allele of skp1 homolog, gst1 {Hum 98.3
d1ejfa_110 Co-chaperone p23 {Human (Homo sapiens) [TaxId: 960 97.62
d1wh0a_134 Ubiquitin carboxyl-terminal hydrolase 19, USP19 {H 96.78
d1wfia_131 Nuclear migration protein nudC {Mouse (Mus musculu 96.63
d1wgva_124 NudC domain containing protein 3, NUDCD3 (KIAA1068 96.56
>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum aestivum) [TaxId: 4565]} Back     information, alignment and structure
class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: HSP20
domain: Small heat shock protein
species: Wheat (Triticum aestivum) [TaxId: 4565]

Probab=99.97  E-value=4.7e-31  Score=204.59  Aligned_cols=110  Identities=51%  Similarity=0.891  Sum_probs=99.8

Q ss_pred             CCceeeEEECCCeEEEEEEeCCCCCcceEEEEEcCeEEEEEeEEeeeeeccCCeEEEEeeeeeEEEEEEECCCCcccCCe
Q 028798           77 SPARVDWKETPEGHFIMLDVPGVKRDELKIEVEENRVLRVSGERKREEEKKGDQWHRVERSHGKFWRQFKLPDNVDLDSV  156 (203)
Q Consensus        77 ~~p~~di~e~~d~y~i~~~LPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~i  156 (203)
                      ..|+++|.|++++|+|+++|||++++||+|+++++.+|+|+|+++.+.+.++..|+.+|+.+|.|+|+|.||.+||.++|
T Consensus        41 ~~p~~dv~e~~~~~~i~~~lPG~~~edi~v~v~~~~~l~i~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i  120 (150)
T d1gmea_          41 ANARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEV  120 (150)
T ss_dssp             GGGCEEEEECSSEEEEEEECTTCCGGGEEEEEETTTEEEEEECCCCCCCCTTCEEEECCCCCCCEEEEEECSSCCCGGGC
T ss_pred             CCCceeEEECCCEEEEEEEeCCCccCCEEEEEEEccceeEEEEEecccccccceeeeeeeccceEEEEEECCCCeeecee
Confidence            34689999999999999999999999999999976679999999888877888999999999999999999999999999


Q ss_pred             EEEEECCEEEEEEeccCCCCCCCCeEEEecc
Q 028798          157 QAKLENGVLTLSLKKLSPDQIKGPRVVGIAG  187 (203)
Q Consensus       157 ~A~~~dGvL~I~lPK~~~~~~~~~r~I~I~~  187 (203)
                      +|+|+||+|+|++||...++++ .+.|+|++
T Consensus       121 ~A~~~nGvL~I~lpK~~~~~~~-~~~I~I~g  150 (150)
T d1gmea_         121 KAGLENGVLTVTVPKAEVKKPE-VKAIQISG  150 (150)
T ss_dssp             EEEEETTEEEEEEECCCCCTTC-CCCCCCCC
T ss_pred             EEEEECCEEEEEEEcCCcCCCC-ceEEeccC
Confidence            9999999999999999877754 66677753
>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog, gst1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ejfa_ b.15.1.2 (A:) Co-chaperone p23 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wh0a_ b.15.1.3 (A:) Ubiquitin carboxyl-terminal hydrolase 19, USP19 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wfia_ b.15.1.4 (A:) Nuclear migration protein nudC {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wgva_ b.15.1.4 (A:) NudC domain containing protein 3, NUDCD3 (KIAA1068) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure