Citrus Sinensis ID: 028800

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200---
Protein Sequence
MGNTEKLLNQIMDLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVPTKQQEKVDEDDLSRRLAELKARG
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHccccHHccccccccccccccccHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MGNTEKLLNQIMDLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESamagstslstpegevNSLMQQVADDYglevsvglpqpaahavptkqqekvdeDDLSRRLAELKARG
Flexible Loop (DISEMBL)
MGNTEKLLNQImdlkftskslqRQARKCekeekaeklkvkkaiekgnmdgariyaensirKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPaahavptkqqekvdeddLSRRLAELKARG
Low Complexity Region (SEG)
MGNTEKLLNQIMDLKFTSKSLQRQarkcekeekaeklkvkkaiekGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVPTKQQEKVDEDDLSRRLAELKARG
Disordered region (IsUnstruct)
****************************************************IYA********EQMNYLRLASRLDAVVARLDTQAKMTTIN***************************************************************************************************************
Disordered Region (DISOPRED)
**********IMDL***********************************GARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAK****************************************************************VNSLMQQVADDYG********************************AELK***
Disordered Region (DISEMBL)
MGNTEKLLNQIMDLKFTSK*****************LKVKKAIEKGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMES*************EVNSLMQQVADDYGLEVSVGLPQPA****************LSRRLAELKARG
Disordered Region (DISPRO)
****EKLLNQIMDLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEV**G************************RLAEL****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGNTEKLLNQIMDLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNxxxxxxxxxxxxxxxxxxxxxAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVPTxxxxxxxxxxxxxxxxxxxxxG
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	203	2.2.26 [Sep-21-2011]
O96552	192	Charged multivesicular bo	yes	no	0.935	0.989	0.487	1e-49
Q5R605	196	Charged multivesicular bo	yes	no	0.935	0.969	0.450	2e-41
Q9HD42	196	Charged multivesicular bo	yes	no	0.935	0.969	0.450	2e-41
Q6PHF0	198	Charged multivesicular bo	yes	no	0.926	0.949	0.456	3e-41
Q921W0	196	Charged multivesicular bo	yes	no	0.935	0.969	0.439	1e-40
Q6NUD8	196	Charged multivesicular bo	N/A	no	0.935	0.969	0.418	6e-39
O60074	200	Vacuolar protein-sorting-	yes	no	0.965	0.98	0.453	2e-38
Q7ZVB1	199	Charged multivesicular bo	no	no	0.935	0.954	0.471	2e-36
Q5E994	199	Charged multivesicular bo	no	no	0.965	0.984	0.48	3e-36
Q5ZKX1	199	Charged multivesicular bo	no	no	0.965	0.984	0.46	9e-36

>sp|O96552|CHMP1_DICDI Charged multivesicular body protein 1 OS=Dictyostelium discoideum GN=chmp1 PE=3 SV=1

 Score =  196 bits (497), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 95/195 (48%), Positives = 152/195 (77%), Gaps = 5/195 (2%)

Query: 9   NQIMDLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQMNY 68
           NQ+  LKFTSK L++Q++K E+ EKA+K+K+KKAIE+GNMDGARIYA+N+IR++ + +NY
Sbjct: 3   NQLFQLKFTSKQLEKQSKKSEQSEKAQKIKLKKAIEQGNMDGARIYAQNAIREKNQSLNY 62

Query: 69  LRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNM 128
           LRLASR+DAV +R++T  +M ++  SMANIVKS+E S+   +L+K+++ MD FE+QF ++
Sbjct: 63  LRLASRIDAVASRVETAIRMKSVTGSMANIVKSMEKSMRNMDLEKITQVMDQFERQFEDL 122

Query: 129 EVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVPTKQQEKVD 188
           +VQ+ ++E+AM  +T+LSTP  +V+ L+ QVAD++GL  +VG+   +A   P+++ ++ +
Sbjct: 123 DVQSVYVENAMNQTTTLSTPADQVDLLISQVADEHGL--NVGMQMGSA---PSEKVQQGE 177

Query: 189 EDDLSRRLAELKARG 203
            D+L+ RL  LK + 
Sbjct: 178 TDELTERLNRLKQKN 192

Probable peripherally associated component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and are delivered to lysosomes enabling degradation of membrane proteins.
Dictyostelium discoideum (taxid: 44689)

>sp|Q5R605|CHM1A_PONAB Charged multivesicular body protein 1a OS=Pongo abelii GN=CHMP1A PE=2 SV=1

 Score =  168 bits (426), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 86/191 (45%), Positives = 135/191 (70%), Gaps = 1/191 (0%)

Query: 11  IMDLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQMNYLR 70
           +  LKFT+K L++ A+K EK+ KAE+ KVKKA+ + N++ AR+YAEN+IRK+ E +N+LR
Sbjct: 5   LFQLKFTAKQLEKLAKKAEKDSKAEQAKVKKALLQKNVECARVYAENAIRKKNEGVNWLR 64

Query: 71  LASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEV 130
           +ASR+DAV +++ T   M  + K+MA + K+L+ +L+T +LQK+S  MD FE+Q  N++V
Sbjct: 65  MASRVDAVASKVQTAVTMKGVTKNMAQVTKALDKALSTMDLQKVSSVMDRFEQQVQNLDV 124

Query: 131 QAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQ-PAAHAVPTKQQEKVDE 189
               ME +M+ +T+L+TP+ +V+SL+ Q+A++ GLEV   L Q P   +   +   +  E
Sbjct: 125 HTSVMEDSMSSATTLTTPQEQVDSLIMQIAEENGLEVLDQLSQLPEGASAVGESSVRSQE 184

Query: 190 DDLSRRLAELK 200
           D LSRRLA L+
Sbjct: 185 DQLSRRLAALR 195

Probable peripherally associated component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids. The MVB pathway appears to require the sequential function of ESCRT-O, -I,-II and -III complexes. ESCRT-III proteins mostly dissociate from the invaginating membrane before the ILV is released. The ESCRT machinery also functions in topologically equivalent membrane fission events, such as the terminal stages of cytokinesis and the budding of enveloped viruses (lentiviruses). ESCRT-III proteins are believed to mediate the necessary vesicle extrusion and/or membrane fission activities, possibly in conjunction with the AAA ATPase VPS4. Involved in cytokinesis. Involved in recruiting VPS4A and/or VPS4B to the midbody of dividing cells. May also be involved in chromosome condensation. Targets the Polycomb group (PcG) protein BMI1/PCGF4 to regions of condensed chromatin. May play a role in stable cell cycle progression and in PcG gene silencing.

Pongo abelii (taxid: 9601)

>sp|Q9HD42|CHM1A_HUMAN Charged multivesicular body protein 1a OS=Homo sapiens GN=CHMP1A PE=1 SV=1

 Score =  168 bits (426), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 86/191 (45%), Positives = 135/191 (70%), Gaps = 1/191 (0%)

Query: 11  IMDLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQMNYLR 70
           +  LKFT+K L++ A+K EK+ KAE+ KVKKA+ + N++ AR+YAEN+IRK+ E +N+LR
Sbjct: 5   LFQLKFTAKQLEKLAKKAEKDSKAEQAKVKKALLQKNVECARVYAENAIRKKNEGVNWLR 64

Query: 71  LASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEV 130
           +ASR+DAV +++ T   M  + K+MA + K+L+ +L+T +LQK+S  MD FE+Q  N++V
Sbjct: 65  MASRVDAVASKVQTAVTMKGVTKNMAQVTKALDKALSTMDLQKVSSVMDRFEQQVQNLDV 124

Query: 131 QAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQ-PAAHAVPTKQQEKVDE 189
               ME +M+ +T+L+TP+ +V+SL+ Q+A++ GLEV   L Q P   +   +   +  E
Sbjct: 125 HTSVMEDSMSSATTLTTPQEQVDSLIMQIAEENGLEVLDQLSQLPEGASAVGESSVRSQE 184

Query: 190 DDLSRRLAELK 200
           D LSRRLA L+
Sbjct: 185 DQLSRRLAALR 195

Probable peripherally associated component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids. The MVB pathway appears to require the sequential function of ESCRT-O, -I,-II and -III complexes. ESCRT-III proteins mostly dissociate from the invaginating membrane before the ILV is released. The ESCRT machinery also functions in topologically equivalent membrane fission events, such as the terminal stages of cytokinesis and the budding of enveloped viruses (HIV-1 and other lentiviruses). ESCRT-III proteins are believed to mediate the necessary vesicle extrusion and/or membrane fission activities, possibly in conjunction with the AAA ATPase VPS4. Involved in cytokinesis. Involved in recruiting VPS4A and/or VPS4B to the midbody of dividing cells. May also be involved in chromosome condensation. Targets the Polycomb group (PcG) protein BMI1/PCGF4 to regions of condensed chromatin. May play a role in stable cell cycle progression and in PcG gene silencing.

Homo sapiens (taxid: 9606)

>sp|Q6PHF0|CHM1A_DANRE Charged multivesicular body protein 1a OS=Danio rerio GN=chmp1a PE=2 SV=1

 Score =  168 bits (425), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 89/195 (45%), Positives = 135/195 (69%), Gaps = 7/195 (3%)

Query: 11  IMDLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQMNYLR 70
           +  LKFTSK L+R A+K EK+ K+E+ KVKKA+++ N++ AR+YAEN+IRK+ E +N+LR
Sbjct: 5   LFQLKFTSKQLERLAKKAEKDSKSEQAKVKKALQQKNVECARVYAENAIRKKNEGLNWLR 64

Query: 71  LASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEV 130
           +ASR+DAV +++ T   M  + K+M  + K+L+ +L++ +LQK+S  MD FE Q  N++V
Sbjct: 65  MASRVDAVASKVQTALTMKGVAKNMTQVTKALDKALSSMDLQKVSAVMDKFETQVQNLDV 124

Query: 131 QAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHA-----VPTKQQE 185
               ME +M+ +T+LSTP+ +V+ L+ Q+A++ GLEV   L Q  A A        + QE
Sbjct: 125 HTSVMEDSMSSATTLSTPQQQVDDLILQIAEESGLEVEDQLSQLPAGASALGETSARAQE 184

Query: 186 KVDEDDLSRRLAELK 200
           K  ED LSRRLA L+
Sbjct: 185 K--EDQLSRRLAALR 197

Probable peripherally associated component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids.

Danio rerio (taxid: 7955)

>sp|Q921W0|CHM1A_MOUSE Charged multivesicular body protein 1a OS=Mus musculus GN=Chmp1a PE=1 SV=1

 Score =  166 bits (419), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 84/191 (43%), Positives = 135/191 (70%), Gaps = 1/191 (0%)

Query: 11  IMDLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQMNYLR 70
           +  LKFT+K L++ A+K EK+ KAE+ KVKKA+++ N++ AR+YAEN+IRK+ E +N+LR
Sbjct: 5   LFQLKFTAKQLEKLAKKAEKDSKAEQAKVKKALQQKNVECARVYAENAIRKKNEGVNWLR 64

Query: 71  LASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEV 130
           +ASR+DAV +++ T   M  + K+MA + K+L+ +L+  +LQK+S  MD FE+Q  N++V
Sbjct: 65  MASRVDAVASKVQTAVTMKGVTKNMAQVTKALDKALSAMDLQKVSAVMDRFEQQVQNLDV 124

Query: 131 QAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQ-PAAHAVPTKQQEKVDE 189
               ME +++ +T+L+TP+ +V+SL+ Q+A++ GLEV   L Q P   +   +   +  E
Sbjct: 125 HTSVMEDSVSSATTLTTPQEQVDSLIVQIAEENGLEVLDQLSQLPEGASAVGESSVRSQE 184

Query: 190 DDLSRRLAELK 200
           D LSRRLA L+
Sbjct: 185 DQLSRRLAALR 195

Probable peripherally associated component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids. The MVB pathway appears to require the sequential function of ESCRT-O, -I,-II and -III complexes. ESCRT-III proteins mostly dissociate from the invaginating membrane before the ILV is released. The ESCRT machinery also functions in topologically equivalent membrane fission events, such as the terminal stages of cytokinesis. ESCRT-III proteins are believed to mediate the necessary vesicle extrusion and/or membrane fission activities, possibly in conjunction with the AAA ATPase VPS4. Involved in cytokinesis. Involved in recruiting VPS4A and/or VPS4B to the midbody of dividing cells. May also be involved in chromosome condensation. Targets the Polycomb group (PcG) protein BMI1/PCGF4 to regions of condensed chromatin. May play a role in stable cell cycle progression and in PcG gene silencing.

Mus musculus (taxid: 10090)

>sp|Q6NUD8|CHM1A_XENLA Charged multivesicular body protein 1a OS=Xenopus laevis GN=chmp1a PE=2 SV=1

 Score =  160 bits (404), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 80/191 (41%), Positives = 133/191 (69%), Gaps = 1/191 (0%)

Query: 11  IMDLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQMNYLR 70
           +  LKFT+K L++ A+K EK+   E+ KVKKA+++ N++ AR+YAEN+IRK+ E +N+LR
Sbjct: 5   LFQLKFTAKQLEKLAKKAEKDSNTEQAKVKKALQQKNVEVARVYAENAIRKKNEGLNWLR 64

Query: 71  LASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEV 130
           +ASR+DAV +++ T   M  + K+MA + K+L+ +L++ +LQK+S  MD F++Q  N++V
Sbjct: 65  MASRVDAVASKVQTAVTMKGVTKNMAQVTKALDKALSSMDLQKVSAVMDKFDQQVQNLDV 124

Query: 131 QAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQ-PAAHAVPTKQQEKVDE 189
               ME +M+ + +L+TP+ +V++L+ Q+A++ GLEV   L Q P   +   +   +  E
Sbjct: 125 HTSVMEDSMSSAMTLTTPQEQVDNLIVQIAEENGLEVMDQLNQLPQGASSVGESSTRTQE 184

Query: 190 DDLSRRLAELK 200
           D LSRRLA L+
Sbjct: 185 DQLSRRLASLR 195

Probable peripherally associated component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids.

Xenopus laevis (taxid: 8355)

>sp|O60074|DID2_SCHPO Vacuolar protein-sorting-associated protein 46 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=did2 PE=3 SV=2

 Score =  159 bits (401), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 93/205 (45%), Positives = 135/205 (65%), Gaps = 9/205 (4%)

Query: 1   MGNTEKLLNQIMDLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIR 60
           M N E  L Q   LKF +KSL +Q+ K  KEE+AE+ KVKKAI KGN + ARIYA N+IR
Sbjct: 1   MSNLEASLFQ---LKFAAKSLNKQSLKAAKEERAEREKVKKAITKGNSEIARIYASNAIR 57

Query: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDS 120
           K+ E +N L+L+SR+DAV +RL T   M  ++ +MA +V+ ++ ++ T NL+ +S+ MD 
Sbjct: 58  KQQESLNLLKLSSRIDAVSSRLQTAVTMRAVSGNMAGVVRGMDRAMKTMNLEMISQVMDK 117

Query: 121 FEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLE----VSVGLPQPAA 176
           FE QF ++ VQ  +M  AM   T++ TP+ +V+ LMQ VAD+ GLE    ++  L  PAA
Sbjct: 118 FEAQFDDVNVQTGYMNKAMGSVTAVDTPQEDVDLLMQTVADEAGLEFNQNMNNNLSVPAA 177

Query: 177 HAVPTKQQEKVDEDDLSRRLAELKA 201
            +VPT     V++D+L  RL  L++
Sbjct: 178 -SVPTP-AAPVEDDNLQERLRALRS 200

Class E VPS protein implicated in concentration and sorting of cargo proteins of the multivesicular body (MVB) for incorporation into intralumenal vesicles. The lumenal sequestrated membrane proteins will be targeted into the vacuole after fusion of the endosome with the vacuole.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q7ZVB1|CHM1B_DANRE Charged multivesicular body protein 1b OS=Danio rerio GN=chmp1b PE=2 SV=1

 Score =  152 bits (383), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 90/191 (47%), Positives = 147/191 (76%), Gaps = 1/191 (0%)

Query: 10  QIMDLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQMNYL 69
            + +LKF +K LQR ++KC+KEEKAEK+KVKKAI+KGNM+ ARI+AEN+IR++ + +N+L
Sbjct: 7   HLFNLKFAAKELQRNSKKCDKEEKAEKVKVKKAIQKGNMEVARIHAENAIRQKNQSVNFL 66

Query: 70  RLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNME 129
           R+++R+DAV AR+ T   M  + KSMA +VK ++++L + NL+K+S  M+ FE+QF  ++
Sbjct: 67  RMSARVDAVAARVQTAVTMNQVTKSMAGVVKGMDATLKSMNLEKISGLMEKFERQFETLD 126

Query: 130 VQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVPTKQQEKVDE 189
           VQ   ME +M+ +T+L+TP+G+V++LM ++AD+ GL++++ LPQ    +V T      ++
Sbjct: 127 VQTAQMEDSMSSTTTLTTPQGQVDTLMMEMADEAGLDLNMELPQGQTGSVGTS-VASAEQ 185

Query: 190 DDLSRRLAELK 200
           D+LS+RLA+L+
Sbjct: 186 DELSQRLAKLR 196

Probable peripherally associated component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids.

Danio rerio (taxid: 7955)

>sp|Q5E994|CHM1B_BOVIN Charged multivesicular body protein 1b OS=Bos taurus GN=CHMP1B PE=2 SV=1

 Score =  151 bits (381), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 96/200 (48%), Positives = 148/200 (74%), Gaps = 4/200 (2%)

Query: 1   MGNTEKLLNQIMDLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIR 60
           M N EK    + +LKF +K L R A+KC+KEEKAEK K+KKAI+KGNM+ ARI+AEN+IR
Sbjct: 1   MSNMEK---HLFNLKFAAKELGRSAKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIR 57

Query: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDS 120
           ++ + +N+LR+++R+DAV AR+ T   M  + KSMA +VKS++++L T NL+K+S  MD 
Sbjct: 58  QKNQAVNFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKTMNLEKISALMDK 117

Query: 121 FEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVP 180
           FE QF  ++VQ + ME  M+ +T+L+TP+G+V+ L+Q++AD+ GL++++ LPQ    +V 
Sbjct: 118 FEHQFETLDVQTQQMEDTMSSTTTLTTPQGQVDMLLQEMADEAGLDLNMELPQGQTGSVG 177

Query: 181 TKQQEKVDEDDLSRRLAELK 200
           T      ++D+LS+RLA L+
Sbjct: 178 TS-VASAEQDELSQRLARLR 196

Probable peripherally associated component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids. The MVB pathway appears to require the sequential function of ESCRT-O, -I,-II and -III complexes. ESCRT-III proteins mostly dissociate from the invaginating membrane before the ILV is released. The ESCRT machinery also functions in topologically equivalent membrane fission events, such as the terminal stages of cytokinesis and the budding of enveloped viruses (lentiviruses). ESCRT-III proteins are believed to mediate the necessary vesicle extrusion and/or membrane fission activities, possibly in conjunction with the AAA ATPase VPS4. Involved in cytokinesis. Involved in recruiting VPS4A and/or VPS4B and SPAST to the midbody of dividing cells.

Bos taurus (taxid: 9913)

>sp|Q5ZKX1|CHM1B_CHICK Charged multivesicular body protein 1b OS=Gallus gallus GN=CHMP1B PE=2 SV=1

 Score =  149 bits (377), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 92/200 (46%), Positives = 148/200 (74%), Gaps = 4/200 (2%)

Query: 1   MGNTEKLLNQIMDLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIR 60
           M N EK    + +LKF +K L R +++C+KEEKAEK K+KKAI+KGNM+ ARI+AEN+IR
Sbjct: 1   MSNMEK---HLFNLKFAAKELNRNSKRCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIR 57

Query: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDS 120
           ++ + +N+LR+++R+DAV AR+ T   M  + KSMA +VKS++++L + NL+K+S  MD 
Sbjct: 58  QKNQAINFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKSMNLEKISALMDK 117

Query: 121 FEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVP 180
           FE QF  ++VQ + ME+ M+ +T+L+TP+ +V+ L+Q++AD+ GL++++ LPQ    +V 
Sbjct: 118 FEHQFETLDVQTQQMENTMSNTTTLTTPQNQVDMLLQEMADEAGLDLNMELPQGQTGSVG 177

Query: 181 TKQQEKVDEDDLSRRLAELK 200
           T      ++D+LS+RLA L+
Sbjct: 178 TS-VASAEQDELSQRLARLR 196

Probable peripherally associated component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids.

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	203
297844728	203	SNF7 family protein [Arabidopsis lyrata	1.0	1.0	0.901	1e-104
15220819	203	vacuolar protein sorting 46.1 [Arabidops	1.0	1.0	0.896	1e-104
28916459	203	putative developmental protein [Nicotian	1.0	1.0	0.896	1e-103
9802746	222	Similar to developmental protein [Arabid	0.995	0.909	0.896	1e-102
224059190	203	predicted protein [Populus trichocarpa]	1.0	1.0	0.960	2e-99
255549676	203	chmp1, putative [Ricinus communis] gi|22	1.0	1.0	0.955	4e-99
356550466	203	PREDICTED: charged multivesicular body p	1.0	1.0	0.945	3e-98
18410249	203	SNF7-like protein [Arabidopsis thaliana]	1.0	1.0	0.935	4e-97
449447834	203	PREDICTED: charged multivesicular body p	1.0	1.0	0.926	5e-97
21537090	203	developmental protein, putative [Arabido	1.0	1.0	0.935	9e-97

>gi|297844728|ref|XP_002890245.1| SNF7 family protein [Arabidopsis lyrata subsp. lyrata] gi|297336087|gb|EFH66504.1| SNF7 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  382 bits (982), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 183/203 (90%), Positives = 196/203 (96%)

Query: 1   MGNTEKLLNQIMDLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIR 60
           MGNT+KL+NQI DLKFTSKSLQRQARKCE+EEK+EKLKVKKAIEKGNMDGARIYAEN+IR
Sbjct: 1   MGNTDKLMNQIFDLKFTSKSLQRQARKCEREEKSEKLKVKKAIEKGNMDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDS 120
           KR+EQMNYLRL+SRLDAVVARLDTQAKM TI KSM NIVKSLES+LATGNLQKMSETMDS
Sbjct: 61  KRSEQMNYLRLSSRLDAVVARLDTQAKMATITKSMTNIVKSLESTLATGNLQKMSETMDS 120

Query: 121 FEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVP 180
           FEKQFVNMEVQAEFME+AMAGS+SLSTPEGEVNSLMQQVADDYGLEVSVGLPQPA HA+P
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSSSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAIP 180

Query: 181 TKQQEKVDEDDLSRRLAELKARG 203
           T  +EKV+EDDLSRRLAELKARG
Sbjct: 181 TNTEEKVEEDDLSRRLAELKARG 203

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15220819|ref|NP_173215.1| vacuolar protein sorting 46.1 [Arabidopsis thaliana] gi|21553734|gb|AAM62827.1| developmental protein, putative [Arabidopsis thaliana] gi|26451738|dbj|BAC42964.1| unknown protein [Arabidopsis thaliana] gi|332191507|gb|AEE29628.1| vacuolar protein sorting 46.1 [Arabidopsis thaliana]

 Score =  381 bits (978), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 182/203 (89%), Positives = 196/203 (96%)

Query: 1   MGNTEKLLNQIMDLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIR 60
           MGNT+KL+NQI +LKFTSKSLQRQARKCEKEE++EKLKVKKAIEKGNMDGARIYAEN+IR
Sbjct: 1   MGNTDKLMNQIFELKFTSKSLQRQARKCEKEERSEKLKVKKAIEKGNMDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDS 120
           KR+EQMNYLRL+SRLDAVVARLDTQAKM TI KSM NIVKSLESSL TGNLQKMSETMDS
Sbjct: 61  KRSEQMNYLRLSSRLDAVVARLDTQAKMATITKSMTNIVKSLESSLTTGNLQKMSETMDS 120

Query: 121 FEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVP 180
           FEKQFVNMEVQAEFM++AMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPA HA+P
Sbjct: 121 FEKQFVNMEVQAEFMDNAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAIP 180

Query: 181 TKQQEKVDEDDLSRRLAELKARG 203
           TK +EKV+EDDL+RRLAELKARG
Sbjct: 181 TKTEEKVEEDDLTRRLAELKARG 203

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|28916459|gb|AAO59435.1| putative developmental protein [Nicotiana benthamiana]

 Score =  379 bits (972), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 182/203 (89%), Positives = 195/203 (96%)

Query: 1   MGNTEKLLNQIMDLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIR 60
           MGNTEKL+NQIM+LKFTSKSLQRQARKCEK+EK+EKLKVKKAIEKGNMDGARIYAEN+IR
Sbjct: 1   MGNTEKLMNQIMELKFTSKSLQRQARKCEKDEKSEKLKVKKAIEKGNMDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDS 120
           KR+EQMNYLRL+SRLDAVVARLDTQAKMTTI+KSM NIVKSLESSLATGNLQKMSETMD 
Sbjct: 61  KRSEQMNYLRLSSRLDAVVARLDTQAKMTTISKSMGNIVKSLESSLATGNLQKMSETMDK 120

Query: 121 FEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVP 180
           FE+QFVNMEVQAEFMES+MAGSTSLSTPE +VNSLM QVADDYGLEVSVGLPQ A HA+P
Sbjct: 121 FEQQFVNMEVQAEFMESSMAGSTSLSTPEDQVNSLMHQVADDYGLEVSVGLPQAAGHAIP 180

Query: 181 TKQQEKVDEDDLSRRLAELKARG 203
           TK  EKVDEDDL+RRLAELKARG
Sbjct: 181 TKDSEKVDEDDLTRRLAELKARG 203

Source: Nicotiana benthamiana

Species: Nicotiana benthamiana

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9802746|gb|AAF99815.1|AC034257_7 Similar to developmental protein [Arabidopsis thaliana]

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 181/202 (89%), Positives = 195/202 (96%)

Query: 1   MGNTEKLLNQIMDLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIR 60
           MGNT+KL+NQI +LKFTSKSLQRQARKCEKEE++EKLKVKKAIEKGNMDGARIYAEN+IR
Sbjct: 1   MGNTDKLMNQIFELKFTSKSLQRQARKCEKEERSEKLKVKKAIEKGNMDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDS 120
           KR+EQMNYLRL+SRLDAVVARLDTQAKM TI KSM NIVKSLESSL TGNLQKMSETMDS
Sbjct: 61  KRSEQMNYLRLSSRLDAVVARLDTQAKMATITKSMTNIVKSLESSLTTGNLQKMSETMDS 120

Query: 121 FEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVP 180
           FEKQFVNMEVQAEFM++AMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPA HA+P
Sbjct: 121 FEKQFVNMEVQAEFMDNAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAIP 180

Query: 181 TKQQEKVDEDDLSRRLAELKAR 202
           TK +EKV+EDDL+RRLAELKAR
Sbjct: 181 TKTEEKVEEDDLTRRLAELKAR 202

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224059190|ref|XP_002299759.1| predicted protein [Populus trichocarpa] gi|222847017|gb|EEE84564.1| predicted protein [Populus trichocarpa]

 Score =  366 bits (940), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 195/203 (96%), Positives = 199/203 (98%)

Query: 1   MGNTEKLLNQIMDLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIR 60
           MGN EKLLNQIMDLKFTSKSLQRQARKCEKEEK+EKLKVKKAIEKGNMDGARIYAEN+IR
Sbjct: 1   MGNAEKLLNQIMDLKFTSKSLQRQARKCEKEEKSEKLKVKKAIEKGNMDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDS 120
           KRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMA+IVKSLES+LATGNLQKMSETMD 
Sbjct: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMASIVKSLESTLATGNLQKMSETMDQ 120

Query: 121 FEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVP 180
           FEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAV 
Sbjct: 121 FEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVA 180

Query: 181 TKQQEKVDEDDLSRRLAELKARG 203
           TK QEKVDEDDLSRRLAELKARG
Sbjct: 181 TKSQEKVDEDDLSRRLAELKARG 203

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255549676|ref|XP_002515889.1| chmp1, putative [Ricinus communis] gi|223544794|gb|EEF46309.1| chmp1, putative [Ricinus communis]

 Score =  365 bits (938), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 194/203 (95%), Positives = 200/203 (98%)

Query: 1   MGNTEKLLNQIMDLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIR 60
           MGNTEKLLNQIMDLKFT+KSLQRQARKCEKEEK+EKLKVKKAIEKGNMDGARIYAEN+IR
Sbjct: 1   MGNTEKLLNQIMDLKFTAKSLQRQARKCEKEEKSEKLKVKKAIEKGNMDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDS 120
           KRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMA+IVKSLES+LATGNLQKMSETMD 
Sbjct: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMASIVKSLESTLATGNLQKMSETMDQ 120

Query: 121 FEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVP 180
           FEKQFVNMEVQAEFME+AMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAV 
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVA 180

Query: 181 TKQQEKVDEDDLSRRLAELKARG 203
           TK QEKVDEDDLSRRLAELKARG
Sbjct: 181 TKSQEKVDEDDLSRRLAELKARG 203

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356550466|ref|XP_003543608.1| PREDICTED: charged multivesicular body protein 1-like isoform 1 [Glycine max] gi|356550468|ref|XP_003543609.1| PREDICTED: charged multivesicular body protein 1-like isoform 2 [Glycine max] gi|356550470|ref|XP_003543610.1| PREDICTED: charged multivesicular body protein 1-like isoform 3 [Glycine max] gi|356556672|ref|XP_003546647.1| PREDICTED: charged multivesicular body protein 1-like [Glycine max]

 Score =  363 bits (931), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 192/203 (94%), Positives = 200/203 (98%)

Query: 1   MGNTEKLLNQIMDLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIR 60
           MGNTEKL+NQIM+LKFTSKSLQRQ+RKCEKEEK+EKLKVKKAIEKGNMDGARIYAEN+IR
Sbjct: 1   MGNTEKLMNQIMELKFTSKSLQRQSRKCEKEEKSEKLKVKKAIEKGNMDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDS 120
           KRTEQMNYLRLASRLDAVVARLDTQAKMTTI+KSM NIVKSLESSLATGNLQKMSETMDS
Sbjct: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMTTISKSMGNIVKSLESSLATGNLQKMSETMDS 120

Query: 121 FEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVP 180
           FEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVP
Sbjct: 121 FEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVP 180

Query: 181 TKQQEKVDEDDLSRRLAELKARG 203
            K+ +KVDEDDLSRRLAELKARG
Sbjct: 181 AKEADKVDEDDLSRRLAELKARG 203

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18410249|ref|NP_565053.1| SNF7-like protein [Arabidopsis thaliana] gi|297839171|ref|XP_002887467.1| SNF7 family protein [Arabidopsis lyrata subsp. lyrata] gi|5903092|gb|AAD55650.1|AC008017_23 Highly similar to developmental protein DG1118 [Arabidopsis thaliana] gi|16648963|gb|AAL24333.1| Highly similar to developmental protein DG1118 [Arabidopsis thaliana] gi|20148689|gb|AAM10235.1| similar to developmental protein DG1118 [Arabidopsis thaliana] gi|297333308|gb|EFH63726.1| SNF7 family protein [Arabidopsis lyrata subsp. lyrata] gi|332197285|gb|AEE35406.1| SNF7-like protein [Arabidopsis thaliana]

 Score =  359 bits (921), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 190/203 (93%), Positives = 198/203 (97%)

Query: 1   MGNTEKLLNQIMDLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIR 60
           MGNT+KL+NQI DLKFTSKSLQRQ+RKCEKEEKAEKLKVKKAIEKGNMDGARIYAEN+IR
Sbjct: 1   MGNTDKLMNQIFDLKFTSKSLQRQSRKCEKEEKAEKLKVKKAIEKGNMDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDS 120
           KR+EQMNYLRLASRLDAVVARLDTQAKMTTI KSM NIVKSLESSLATGNLQKMSETMDS
Sbjct: 61  KRSEQMNYLRLASRLDAVVARLDTQAKMTTITKSMTNIVKSLESSLATGNLQKMSETMDS 120

Query: 121 FEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVP 180
           FEKQFVNMEVQAEFME+AMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPA HA+P
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAIP 180

Query: 181 TKQQEKVDEDDLSRRLAELKARG 203
           TK +EKVDEDDLSRRLAELKARG
Sbjct: 181 TKTEEKVDEDDLSRRLAELKARG 203

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449447834|ref|XP_004141672.1| PREDICTED: charged multivesicular body protein 1-like [Cucumis sativus] gi|449480603|ref|XP_004155942.1| PREDICTED: charged multivesicular body protein 1-like [Cucumis sativus]

 Score =  358 bits (920), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 188/203 (92%), Positives = 201/203 (99%)

Query: 1   MGNTEKLLNQIMDLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIR 60
           MGNTEKLLNQIM+LKFTSKSLQRQARKCEKEEK+EKLK+KKA+EKGN+DGARIYAEN+IR
Sbjct: 1   MGNTEKLLNQIMELKFTSKSLQRQARKCEKEEKSEKLKIKKAMEKGNVDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDS 120
           KRTEQMNYLRL+SRLDAVVARLDTQAKMTTINKSMA+IVKSLES+LATGNLQKMSETMD 
Sbjct: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESTLATGNLQKMSETMDQ 120

Query: 121 FEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVP 180
           FEKQFVNMEVQAEFME+AMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPA+HAVP
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAVP 180

Query: 181 TKQQEKVDEDDLSRRLAELKARG 203
           TK+ EKVDEDDL+RRLAELKARG
Sbjct: 181 TKETEKVDEDDLTRRLAELKARG 203

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21537090|gb|AAM61431.1| developmental protein, putative [Arabidopsis thaliana]

 Score =  358 bits (918), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 190/203 (93%), Positives = 197/203 (97%)

Query: 1   MGNTEKLLNQIMDLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIR 60
           MGNT+KL+NQI DLKFTSKSLQRQ+RKCEKEEKAEKLKVKKAIEKGNMDGARIYAEN+IR
Sbjct: 1   MGNTDKLMNQIFDLKFTSKSLQRQSRKCEKEEKAEKLKVKKAIEKGNMDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDS 120
           KR EQMNYLRLASRLDAVVARLDTQAKMTTI KSM NIVKSLESSLATGNLQKMSETMDS
Sbjct: 61  KRREQMNYLRLASRLDAVVARLDTQAKMTTITKSMTNIVKSLESSLATGNLQKMSETMDS 120

Query: 121 FEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVP 180
           FEKQFVNMEVQAEFME+AMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPA HA+P
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAIP 180

Query: 181 TKQQEKVDEDDLSRRLAELKARG 203
           TK +EKVDEDDLSRRLAELKARG
Sbjct: 181 TKTEEKVDEDDLSRRLAELKARG 203

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	203
TAIR|locus:2032607	203	VPS46.2 [Arabidopsis thaliana	1.0	1.0	0.837	1e-82
TAIR|locus:2007883	203	VPS46.1 "vacuolar protein sort	1.0	1.0	0.802	6e-80
DICTYBASE|DDB_G0267394	192	vps46 "SNF7 family protein" [D	0.931	0.984	0.427	1.6e-38
UNIPROTKB|Q5E994	199	CHMP1B "Charged multivesicular	0.965	0.984	0.4	9.2e-36
UNIPROTKB|Q7LBR1	199	CHMP1B "Charged multivesicular	0.965	0.984	0.395	2.4e-35
UNIPROTKB|Q5ZKX1	199	CHMP1B "Charged multivesicular	0.965	0.984	0.39	5.1e-35
RGD|1593500	230	Chmp1b "charged multivesicular	0.965	0.852	0.39	5.1e-35
ZFIN|ZDB-GENE-030131-8370	199	chmp1b "chromatin modifying pr	0.965	0.984	0.385	5.1e-35
UNIPROTKB|F1NVQ6	199	CHMP1B "Charged multivesicular	0.965	0.984	0.39	6.5e-35
MGI|MGI:1914314	199	Chmp1b "charged multivesicular	0.965	0.984	0.39	8.3e-35

TAIR|locus:2032607 VPS46.2 [Arabidopsis thaliana (taxid:3702)]

 Score = 829 (296.9 bits), Expect = 1.0e-82, P = 1.0e-82
 Identities = 170/203 (83%), Positives = 177/203 (87%)

Query:     1 MGNTEKLLNQIMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIR 60
             MGNT+KL+NQI DLKFTSKSLQRQ                     GNMDGARIYAEN+IR
Sbjct:     1 MGNTDKLMNQIFDLKFTSKSLQRQSRKCEKEEKAEKLKVKKAIEKGNMDGARIYAENAIR 60

Query:    61 KRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDS 120
             KR+EQMNYLRLASRLDAVVARLDTQAKMTTI KSM NIVKSLESSLATGNLQKMSETMDS
Sbjct:    61 KRSEQMNYLRLASRLDAVVARLDTQAKMTTITKSMTNIVKSLESSLATGNLQKMSETMDS 120

Query:   121 FEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVP 180
             FEKQFVNMEVQAEFME+AMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPA HA+P
Sbjct:   121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAIP 180

Query:   181 TKQQEKVDEDDLSRRLAELKARG 203
             TK +EKVDEDDLSRRLAELKARG
Sbjct:   181 TKTEEKVDEDDLSRRLAELKARG 203

GO:0009507 "chloroplast" evidence=ISM

GO:0015031 "protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=ISS;RCA

GO:0000578 "embryonic axis specification" evidence=IGI

GO:0009793 "embryo development ending in seed dormancy" evidence=IGI

GO:0032509 "endosome transport via multivesicular body sorting pathway" evidence=IGI

GO:0040007 "growth" evidence=IGI

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0010286 "heat acclimation" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

TAIR|locus:2007883 VPS46.1 "vacuolar protein sorting 46.1" [Arabidopsis thaliana (taxid:3702)]

 Score = 803 (287.7 bits), Expect = 6.0e-80, P = 6.0e-80
 Identities = 163/203 (80%), Positives = 175/203 (86%)

Query:     1 MGNTEKLLNQIMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIR 60
             MGNT+KL+NQI +LKFTSKSLQRQ                     GNMDGARIYAEN+IR
Sbjct:     1 MGNTDKLMNQIFELKFTSKSLQRQARKCEKEERSEKLKVKKAIEKGNMDGARIYAENAIR 60

Query:    61 KRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDS 120
             KR+EQMNYLRL+SRLDAVVARLDTQAKM TI KSM NIVKSLESSL TGNLQKMSETMDS
Sbjct:    61 KRSEQMNYLRLSSRLDAVVARLDTQAKMATITKSMTNIVKSLESSLTTGNLQKMSETMDS 120

Query:   121 FEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVP 180
             FEKQFVNMEVQAEFM++AMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPA HA+P
Sbjct:   121 FEKQFVNMEVQAEFMDNAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAIP 180

Query:   181 TKQQEKVDEDDLSRRLAELKARG 203
             TK +EKV+EDDL+RRLAELKARG
Sbjct:   181 TKTEEKVEEDDLTRRLAELKARG 203

GO:0015031 "protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=ISS

GO:0000578 "embryonic axis specification" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

GO:0032509 "endosome transport via multivesicular body sorting pathway" evidence=IGI

GO:0040007 "growth" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

DICTYBASE|DDB_G0267394 vps46 "SNF7 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
 Identities = 83/194 (42%), Positives = 133/194 (68%)

Query:     9 NQIMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNY 68
             NQ+  LKFTSK L++Q                     GNMDGARIYA+N+IR++ + +NY
Sbjct:     3 NQLFQLKFTSKQLEKQSKKSEQSEKAQKIKLKKAIEQGNMDGARIYAQNAIREKNQSLNY 62

Query:    69 LRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNM 128
             LRLASR+DAV +R++T  +M ++  SMANIVKS+E S+   +L+K+++ MD FE+QF ++
Sbjct:    63 LRLASRIDAVASRVETAIRMKSVTGSMANIVKSMEKSMRNMDLEKITQVMDQFERQFEDL 122

Query:   129 EVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVPTKQQEKVD 188
             +VQ+ ++E+AM  +T+LSTP  +V+ L+ QVAD++GL  +VG+   +A   P+++ ++ +
Sbjct:   123 DVQSVYVENAMNQTTTLSTPADQVDLLISQVADEHGL--NVGMQMGSA---PSEKVQQGE 177

Query:   189 EDDLSRRLAELKAR 202
              D+L+ RL  LK +
Sbjct:   178 TDELTERLNRLKQK 191

GO:0015031 "protein transport" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0045324 "late endosome to vacuole transport" evidence=ISS

GO:0006623 "protein targeting to vacuole" evidence=ISS

GO:0005770 "late endosome" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0010008 "endosome membrane" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|Q5E994 CHMP1B "Charged multivesicular body protein 1b" [Bos taurus (taxid:9913)]

 Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
 Identities = 80/200 (40%), Positives = 128/200 (64%)

Query:     1 MGNTEKLLNQIMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIR 60
             M N EK    + +LKF +K L R                      GNM+ ARI+AEN+IR
Sbjct:     1 MSNMEK---HLFNLKFAAKELGRSAKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIR 57

Query:    61 KRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDS 120
             ++ + +N+LR+++R+DAV AR+ T   M  + KSMA +VKS++++L T NL+K+S  MD 
Sbjct:    58 QKNQAVNFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKTMNLEKISALMDK 117

Query:   121 FEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVP 180
             FE QF  ++VQ + ME  M+ +T+L+TP+G+V+ L+Q++AD+ GL++++ LPQ    +V 
Sbjct:   118 FEHQFETLDVQTQQMEDTMSSTTTLTTPQGQVDMLLQEMADEAGLDLNMELPQGQTGSVG 177

Query:   181 TKQQEKVDEDDLSRRLAELK 200
             T      ++D+LS+RLA L+
Sbjct:   178 TSVAS-AEQDELSQRLARLR 196

GO:0031902 "late endosome membrane" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

UNIPROTKB|Q7LBR1 CHMP1B "Charged multivesicular body protein 1b" [Homo sapiens (taxid:9606)]

 Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
 Identities = 79/200 (39%), Positives = 127/200 (63%)

Query:     1 MGNTEKLLNQIMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIR 60
             M N EK    + +LKF +K L R                      GNM+ ARI+AEN+IR
Sbjct:     1 MSNMEK---HLFNLKFAAKELSRSAKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIR 57

Query:    61 KRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDS 120
             ++ + +N+LR+++R+DAV AR+ T   M  + KSMA +VKS++++L T NL+K+S  MD 
Sbjct:    58 QKNQAVNFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKTMNLEKISALMDK 117

Query:   121 FEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVP 180
             FE QF  ++VQ + ME  M+ +T+L+TP+ +V+ L+Q++AD+ GL++++ LPQ    +V 
Sbjct:   118 FEHQFETLDVQTQQMEDTMSSTTTLTTPQNQVDMLLQEMADEAGLDLNMELPQGQTGSVG 177

Query:   181 TKQQEKVDEDDLSRRLAELK 200
             T      ++D+LS+RLA L+
Sbjct:   178 TSVAS-AEQDELSQRLARLR 196

GO:0007049 "cell cycle" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0031902 "late endosome membrane" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0000910 "cytokinesis" evidence=IMP

UNIPROTKB|Q5ZKX1 CHMP1B "Charged multivesicular body protein 1b" [Gallus gallus (taxid:9031)]

 Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
 Identities = 78/200 (39%), Positives = 128/200 (64%)

Query:     1 MGNTEKLLNQIMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIR 60
             M N EK    + +LKF +K L R                      GNM+ ARI+AEN+IR
Sbjct:     1 MSNMEK---HLFNLKFAAKELNRNSKRCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIR 57

Query:    61 KRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDS 120
             ++ + +N+LR+++R+DAV AR+ T   M  + KSMA +VKS++++L + NL+K+S  MD 
Sbjct:    58 QKNQAINFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKSMNLEKISALMDK 117

Query:   121 FEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVP 180
             FE QF  ++VQ + ME+ M+ +T+L+TP+ +V+ L+Q++AD+ GL++++ LPQ    +V 
Sbjct:   118 FEHQFETLDVQTQQMENTMSNTTTLTTPQNQVDMLLQEMADEAGLDLNMELPQGQTGSVG 177

Query:   181 TKQQEKVDEDDLSRRLAELK 200
             T      ++D+LS+RLA L+
Sbjct:   178 TSVAS-AEQDELSQRLARLR 196

GO:0015031 "protein transport" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0031902 "late endosome membrane" evidence=IEA

RGD|1593500 Chmp1b "charged multivesicular body protein 1B" [Rattus norvegicus (taxid:10116)]

 Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
 Identities = 78/200 (39%), Positives = 127/200 (63%)

Query:     1 MGNTEKLLNQIMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIR 60
             + N EK    + +LKF +K L R                      GNM+ ARI+AEN+IR
Sbjct:    32 LSNMEK---HLFNLKFAAKELNRSAKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIR 88

Query:    61 KRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDS 120
             ++ + +N+LR+++R+DAV AR+ T   M  + KSMA +VKS++++L T NL+K+S  MD 
Sbjct:    89 QKNQAVNFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKTMNLEKISALMDK 148

Query:   121 FEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVP 180
             FE QF  ++VQ + ME  M+ +T+L+TP+ +V+ L+Q++AD+ GL++++ LPQ    +V 
Sbjct:   149 FEHQFETLDVQTQQMEDTMSSTTTLTTPQNQVDMLLQEMADEAGLDLNMELPQGQTGSVG 208

Query:   181 TKQQEKVDEDDLSRRLAELK 200
             T      ++D+LS+RLA L+
Sbjct:   209 TSVAS-AEQDELSQRLARLR 227

GO:0000910 "cytokinesis" evidence=ISO

GO:0019904 "protein domain specific binding" evidence=ISO

ZFIN|ZDB-GENE-030131-8370 chmp1b "chromatin modifying protein 1B" [Danio rerio (taxid:7955)]

 Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
 Identities = 77/200 (38%), Positives = 130/200 (65%)

Query:     1 MGNTEKLLNQIMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIR 60
             M + EK    + +LKF +K LQR                      GNM+ ARI+AEN+IR
Sbjct:     1 MSSMEK---HLFNLKFAAKELQRNSKKCDKEEKAEKVKVKKAIQKGNMEVARIHAENAIR 57

Query:    61 KRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDS 120
             ++ + +N+LR+++R+DAV AR+ T   M  + KSMA +VK ++++L + NL+K+S  M+ 
Sbjct:    58 QKNQSVNFLRMSARVDAVAARVQTAVTMNQVTKSMAGVVKGMDATLKSMNLEKISGLMEK 117

Query:   121 FEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVP 180
             FE+QF  ++VQ   ME +M+ +T+L+TP+G+V++LM ++AD+ GL++++ LPQ    +V 
Sbjct:   118 FERQFETLDVQTAQMEDSMSSTTTLTTPQGQVDTLMMEMADEAGLDLNMELPQGQTGSVG 177

Query:   181 TKQQEKVDEDDLSRRLAELK 200
             T      ++D+LS+RLA+L+
Sbjct:   178 TSVAS-AEQDELSQRLAKLR 196

GO:0015031 "protein transport" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0006810 "transport" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0031902 "late endosome membrane" evidence=IEA

UNIPROTKB|F1NVQ6 CHMP1B "Charged multivesicular body protein 1b" [Gallus gallus (taxid:9031)]

 Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
 Identities = 78/200 (39%), Positives = 127/200 (63%)

Query:     1 MGNTEKLLNQIMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIR 60
             M N EK    + +LKF +K L R                      GNM+ ARI+AEN+IR
Sbjct:     1 MSNMEK---HLFNLKFAAKELNRNSKRCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIR 57

Query:    61 KRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDS 120
             ++ + +N+LR+++R+DAV AR+ T   M  + KSMA +VKS++++L + NL+K+S  MD 
Sbjct:    58 QKNQAINFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKSMNLEKISALMDK 117

Query:   121 FEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVP 180
             FE QF  ++VQ + ME  M+ +T+L+TP+ +V+ L+Q++AD+ GL++++ LPQ    +V 
Sbjct:   118 FEHQFETLDVQTQQMEDTMSNTTTLTTPQNQVDMLLQEMADEAGLDLNMELPQGQTGSVG 177

Query:   181 TKQQEKVDEDDLSRRLAELK 200
             T      ++D+LS+RLA L+
Sbjct:   178 TSVAS-AEQDELSQRLARLR 196

GO:0015031 "protein transport" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

MGI|MGI:1914314 Chmp1b "charged multivesicular body protein 1B" [Mus musculus (taxid:10090)]

 Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
 Identities = 78/200 (39%), Positives = 127/200 (63%)

Query:     1 MGNTEKLLNQIMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIR 60
             M N EK    + +LKF +K L R                      GNM+ ARI+AEN+IR
Sbjct:     1 MSNMEK---HLFNLKFAAKELNRSSKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIR 57

Query:    61 KRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDS 120
             ++ + +N+LR+++R+DAV AR+ T   M  + KSMA +VKS++++L + NL+K+S  MD 
Sbjct:    58 QKNQGVNFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKSMNLEKISALMDK 117

Query:   121 FEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVP 180
             FE QF  ++VQ + ME  M+ +T+L+TP+ +V+ L+Q++AD+ GL++++ LPQ    +V 
Sbjct:   118 FEHQFETLDVQTQQMEDTMSSTTTLTTPQNQVDMLLQEMADEAGLDLNMELPQGQTGSVG 177

Query:   181 TKQQEKVDEDDLSRRLAELK 200
             T      ++D+LS+RLA L+
Sbjct:   178 TSVAS-AEQDELSQRLARLR 196

GO:0000910 "cytokinesis" evidence=ISO

GO:0005575 "cellular_component" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=ISO

GO:0051301 "cell division" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9HD42	CHM1A_HUMAN	No assigned EC number	0.4502	0.9359	0.9693	yes	no
Q6PHF0	CHM1A_DANRE	No assigned EC number	0.4564	0.9261	0.9494	yes	no
Q921W0	CHM1A_MOUSE	No assigned EC number	0.4397	0.9359	0.9693	yes	no
Q5R605	CHM1A_PONAB	No assigned EC number	0.4502	0.9359	0.9693	yes	no
P69771	DID2_YEAST	No assigned EC number	0.37	0.9408	0.9362	yes	no
O60074	DID2_SCHPO	No assigned EC number	0.4536	0.9655	0.98	yes	no
O96552	CHMP1_DICDI	No assigned EC number	0.4871	0.9359	0.9895	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: scaffold_101977.1 annotation not avaliable (203 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	203
pfam03357	169	pfam03357, Snf7, Snf7	2e-14
COG5491	204	COG5491, VPS24, Conserved protein implicated in se	9e-09

>gnl|CDD|146145 pfam03357, Snf7, Snf7

 Score = 67.3 bits (165), Expect = 2e-14
 Identities = 33/163 (20%), Positives = 70/163 (42%), Gaps = 2/163 (1%)

Query: 11  IMDLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQMNYLR 70
           I+ L+   + L ++    EK+ K  + ++KK  +KGN D A I  +   R   +      
Sbjct: 3   ILSLRKAIRELDKKQESLEKKIKKLEAEIKKLAKKGNKDAALILLKQKKRYEKQLDQLDG 62

Query: 71  LASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEV 130
             + L+ V   ++       +  +M    K++++     ++ K+ + MD  E Q    + 
Sbjct: 63  QLANLEQVRMAIENAKTNQEVLNAMKGGAKAMKAMNKNMDIDKIDDLMDEIEDQMEKADE 122

Query: 131 QAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQ 173
            +E +   +  +      E E+++ +  + D+ G E  V LP 
Sbjct: 123 ISEMLSDTLDDADEE--DEEELDAELDALLDEIGDEELVELPS 163

This family of proteins are involved in protein sorting and transport from the endosome to the vacuole/lysosome in eukaryotic cells. Vacuoles/lysosomes play an important role in the degradation of both lipids and cellular proteins. In order to perform this degradative function, vacuoles/lysosomes contain numerous hydrolases which have been transported in the form of inactive precursors via the biosynthetic pathway and are proteolytically activated upon delivery to the vacuole/lysosome. The delivery of transmembrane proteins, such as activated cell surface receptors to the lumen of the vacuole/lysosome, either for degradation/downregulation, or in the case of hydrolases, for proper localisation, requires the formation of multivesicular bodies (MVBs). These late endosomal structures are formed by invaginating and budding of the limiting membrane into the lumen of the compartment. During this process, a subset of the endosomal membrane proteins is sorted into the forming vesicles. Mature MVBs fuse with the vacuole/lysosome, thereby releasing cargo containing vesicles into its hydrolytic lumen for degradation. Endosomal proteins that are not sorted into the intralumenal MVB vesicles are either recycled back to the plasma membrane or Golgi complex, or remain in the limiting membrane of the MVB and are thereby transported to the limiting membrane of the vacuole/lysosome as a consequence of fusion. Therefore, the MVB sorting pathway plays a critical role in the decision between recycling and degradation of membrane proteins. A few archaeal sequences are also present within this family. Length = 169

>gnl|CDD|227778 COG5491, VPS24, Conserved protein implicated in secretion [Cell motility and secretion]

 Score = 52.9 bits (127), Expect = 9e-09
 Identities = 53/204 (25%), Positives = 81/204 (39%), Gaps = 26/204 (12%)

Query: 19  KSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQMNYLRLASRLDAV 78
            SL+RQA+K  +E K E  K +  + +         A N  R   E     +  SRLDA 
Sbjct: 3   SSLERQAKKLVRELKQEAKKGQVLLNE-----IAKKAPNRRRLAEELYKLRKARSRLDAS 57

Query: 79  VARLDTQAKMTTINKSMANIVKSLESSLATGN-LQKMSETMDSFEKQFVNMEVQ---AEF 134
           ++RL +   M      M  +   +  +    N L+ +   M  FE QF+ +E+     E 
Sbjct: 58  ISRLQSLDTMLFEKVVMRQVSGDMAKAAMYMNELESIRRIMQLFETQFLALELVQLRLET 117

Query: 135 MESAMAGSTSLS--TPEGEVNSLMQQVADDYGLE---------VSVGLPQPAAHAV---- 179
           M+  M             E++ L+ +V  + GLE          +V        AV    
Sbjct: 118 MDELMDVVVGDPVLEDLEELDELVNKVLPEIGLELDESEQSLPANVVENGSVPAAVSPEA 177

Query: 180 --PTKQQEKVDEDDLSRRLAELKA 201
               ++ EK+ ED L  RL EL A
Sbjct: 178 RKILEEAEKIAEDRLQERLRELPA 201

Length = 204

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	203
KOG3232	203	consensus Vacuolar assembly/sorting protein DID2 [	100.0
KOG3230	224	consensus Vacuolar assembly/sorting protein DID4 [	100.0
KOG3229	227	consensus Vacuolar sorting protein VPS24 [Intracel	100.0
KOG3231	208	consensus Predicted assembly/vacuolar sorting prot	100.0
PF03357	171	Snf7: Snf7; InterPro: IPR005024 This is a family o	99.94
KOG1656	221	consensus Protein involved in glucose derepression	99.62
PTZ00464	211	SNF-7-like protein; Provisional	99.62
KOG2910	209	consensus Uncharacterized conserved protein predic	99.59
PTZ00446	191	vacuolar sorting protein SNF7-like; Provisional	99.57
COG5491	204	VPS24 Conserved protein implicated in secretion [C	99.53
KOG2911	439	consensus Uncharacterized conserved protein [Funct	99.15
KOG1655	218	consensus Protein involved in vacuolar protein sor	98.56
COG5491	204	VPS24 Conserved protein implicated in secretion [C	98.02
PTZ00464	211	SNF-7-like protein; Provisional	97.8
PRK10698	222	phage shock protein PspA; Provisional	97.52
KOG3231	208	consensus Predicted assembly/vacuolar sorting prot	97.25
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	97.2
PTZ00446	191	vacuolar sorting protein SNF7-like; Provisional	97.19
PF03398	165	Ist1: Regulator of Vps4 activity in the MVB pathwa	97.19
KOG3230	224	consensus Vacuolar assembly/sorting protein DID4 [	97.1
PF03357	171	Snf7: Snf7; InterPro: IPR005024 This is a family o	97.0
TIGR02977	219	phageshock_pspA phage shock protein A. Members of	96.8
KOG1656	221	consensus Protein involved in glucose derepression	96.33
COG1842	225	PspA Phage shock protein A (IM30), suppresses sigm	95.29
KOG3229	227	consensus Vacuolar sorting protein VPS24 [Intracel	93.8
KOG2910	209	consensus Uncharacterized conserved protein predic	87.88
KOG3232	203	consensus Vacuolar assembly/sorting protein DID2 [	87.52
COG1937	89	Uncharacterized protein conserved in bacteria [Fun	84.85
PF02583	85	Trns_repr_metal: Metal-sensitive transcriptional r	82.6
KOG2027	388	consensus Spindle pole body protein [Cytoskeleton]	81.91

>KOG3232 consensus Vacuolar assembly/sorting protein DID2 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=9.9e-48  Score=300.36  Aligned_cols=201  Identities=63%  Similarity=0.890  Sum_probs=189.6

Q ss_pred             CCchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028800            1 MGNTEKLLNQIMDLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVA   80 (203)
Q Consensus         1 mg~~~~l~~~~~~lr~~~r~L~re~~kle~ee~k~~~~iK~a~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aqL~~v~~   80 (203)
                      ||+.+.|...+|+|+|+.++|.|++++|+++|+.++.++|+|+++||.+.|||||.|+||++++..+|+++++++|+|..
T Consensus         1 ~~s~~~le~~lf~LkF~sk~L~r~a~kceKeEK~Ek~K~kkAi~kgN~dvArIyAeNAIRkkne~~n~LrlssRvDAVaa   80 (203)
T KOG3232|consen    1 MGSTDKLENHLFDLKFTSKQLQRQAKKCEKEEKAEKAKLKKAIQKGNMDVARIYAENAIRKKNEAVNYLRLSSRVDAVAA   80 (203)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            68889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHH
Q 028800           81 RLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVA  160 (203)
Q Consensus        81 ~l~~a~~~~~~~~~m~~~~~~m~~~n~~m~l~~i~~~m~~f~~e~~~~~i~~e~m~d~~~~~~~~~~~eeevd~ll~qv~  160 (203)
                      |++|+.+|.+|+++|.+++++|....+.||+++|+.+|+.|+++|+.+++..++|+++|++++....|.++||.|+++|+
T Consensus        81 RvqTavtmr~Vt~sM~gVvK~md~alktmNLekis~~MDkFE~qFedldvqt~~me~~m~~st~l~tpq~~Vd~Lmq~vA  160 (203)
T KOG3232|consen   81 RVQTAVTMRKVTKSMAGVVKSMDSALKTMNLEKISQLMDKFEKQFEDLDVQTEVMEKAMSGSTALSTPQGDVDSLMQQVA  160 (203)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhHHHHHHHhccCcccccCChhHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999988999999999999999


Q ss_pred             HHhcchhhcCCCCC--CCCCCCcccccCCcHHHHHHHHHHHhcC
Q 028800          161 DDYGLEVSVGLPQP--AAHAVPTKQQEKVDEDDLSRRLAELKAR  202 (203)
Q Consensus       161 ~E~gi~~~~~l~~~--p~~~~~~~~~~~~~~ddl~~RL~~Lr~~  202 (203)
                      ||+|++++..||..  |..|+++.++. .++|+|.+||++||+.
T Consensus       161 DeaGlElnq~lp~~~~~a~~~~t~~~~-~e~d~L~qRLaaLR~~  203 (203)
T KOG3232|consen  161 DEAGLELNQELPQNVVPAISVKTSAVV-DEEDDLTQRLAALRAR  203 (203)
T ss_pred             HHhchhhhhcCCCCCCCCcCCCCcccc-chhhHHHHHHHHHhcC
Confidence            99999999999877  34455554332 3459999999999973

>KOG3230 consensus Vacuolar assembly/sorting protein DID4 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.2e-46  Score=297.80  Aligned_cols=198  Identities=25%  Similarity=0.393  Sum_probs=184.3

Q ss_pred             hHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028800            4 TEKLLNQIMDLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLD   83 (203)
Q Consensus         4 ~~~l~~~~~~lr~~~r~L~re~~kle~ee~k~~~~iK~a~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aqL~~v~~~l~   83 (203)
                      ..-|++.++.|..+.|+|+|+..+++.++|++..+||+.+|.|+.+++||+|++|||.|+++.+|+.+++||.+|+.+++
T Consensus        11 ~e~Lr~nqRal~~a~ReleRer~~le~qeKklvaeIKk~AK~gq~~A~KimAkdLvRtR~~i~kf~~~kaqiqaVSl~iQ   90 (224)
T KOG3230|consen   11 AELLRENQRALNKATRELERERQKLELQEKKLVAEIKKTAKQGQMDAVKIMAKDLVRTRRYIKKFQNMKAQIQAVSLRIQ   90 (224)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34578888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHHHHh
Q 028800           84 TQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDY  163 (203)
Q Consensus        84 ~a~~~~~~~~~m~~~~~~m~~~n~~m~l~~i~~~m~~f~~e~~~~~i~~e~m~d~~~~~~~~~~~eeevd~ll~qv~~E~  163 (203)
                      +..++..++.+|+++|+.|..||+.||||+++++|++|++|.+.|++.+|||+|++|++++++++|||+|.+++||+||+
T Consensus        91 tlkss~sma~aMkGaTkam~~MNrqmnlpq~qkIm~eFekQse~Mdm~~Emm~daIDdal~~~edEEEtd~lvnqVLDEi  170 (224)
T KOG3230|consen   91 TLKSSTSMAQAMKGATKAMAGMNRQMNLPQIQKIMQEFEKQSEIMDMKEEMMDDAIDDALGDDEDEEETDDLVNQVLDEI  170 (224)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhcCCCCCCCC----CCC------ccc-----ccCCcHHHHHHHHHHHhc
Q 028800          164 GLEVSVGLPQPAAH----AVP------TKQ-----QEKVDEDDLSRRLAELKA  201 (203)
Q Consensus       164 gi~~~~~l~~~p~~----~~~------~~~-----~~~~~~ddl~~RL~~Lr~  201 (203)
                      |++++.+|.++|+.    |++      .++     .....+|||++||++||.
T Consensus       171 Gvdl~~qL~~~P~~~~~~~~a~~ig~~~a~~~gs~~~~~~dddLqaRL~~Lrk  223 (224)
T KOG3230|consen  171 GVDLASQLSSLPSAAGSLPIAKTIGGKKAEAAGSEFHSDADDDLQARLDNLRK  223 (224)
T ss_pred             cccHHHHhccCcccccccchhhccCCccccccccccCCCchhHHHHHHHHHhc
Confidence            99999999999873    111      111     123459999999999996

>KOG3229 consensus Vacuolar sorting protein VPS24 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3e-41  Score=270.46  Aligned_cols=198  Identities=18%  Similarity=0.298  Sum_probs=178.5

Q ss_pred             hHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028800            4 TEKLLNQIMDLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLD   83 (203)
Q Consensus         4 ~~~l~~~~~~lr~~~r~L~re~~kle~ee~k~~~~iK~a~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aqL~~v~~~l~   83 (203)
                      +..+++|.+.||+..|.|+|+++.+++++++.+..||+++|+||...|++|||++|+.|+++.++|..+|||+||+++|.
T Consensus        13 KEq~r~wq~kiRke~r~ldrqir~iqree~kv~~~iK~aAKknD~~t~~iLAKEiv~srk~v~Rly~sKAqlnSv~M~l~   92 (227)
T KOG3229|consen   13 KEQVREWQSKIRKEGRQLDRQIRDIQREEEKVQKSIKQAAKKNDKDTCRILAKEIVQSRKAVKRLYESKAQLNSVSMQLK   92 (227)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhHHHHHH
Confidence            66799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHHHHh
Q 028800           84 TQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDY  163 (203)
Q Consensus        84 ~a~~~~~~~~~m~~~~~~m~~~n~~m~l~~i~~~m~~f~~e~~~~~i~~e~m~d~~~~~~~~~~~eeevd~ll~qv~~E~  163 (203)
                      .+.++..++++|.++|.+|+.+|+++.+|+|..||.+|++++++.|+++||++|+|+++.+.++.++++|+.|++|+.+|
T Consensus        93 eqla~~r~~G~lqkStevMk~v~sLvk~Pel~~TMrelSkEmmKaGIIEEmvdet~esv~d~eemeEe~deEVdkIL~~i  172 (227)
T KOG3229|consen   93 EQLATLRVAGSLQKSTEVMKAVNSLVKLPELAATMRELSKEMMKAGIIEEMVDETMESVEDSEEMEEEADEEVDKILTEI  172 (227)
T ss_pred             HHHHHHHHHhhHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999998889999999999999999


Q ss_pred             cchhhcCCCCCCCCC---CC--cccc--------c----CCcHHHHHHHHHHHhc
Q 028800          164 GLEVSVGLPQPAAHA---VP--TKQQ--------E----KVDEDDLSRRLAELKA  201 (203)
Q Consensus       164 gi~~~~~l~~~p~~~---~~--~~~~--------~----~~~~ddl~~RL~~Lr~  201 (203)
                      ...-...+|.+|...   ++  ...|        +    +++..++..||++||+
T Consensus       173 t~~~~~~~p~a~~~~~~~~~~~~a~p~~~~~a~~d~~e~eE~le~mr~RLa~lrs  227 (227)
T KOG3229|consen  173 TGEKAGEAPLAVTATLAAVPAEKASPSAKEDAAEDGVEEEEELEEMRSRLAALRS  227 (227)
T ss_pred             hccccccCCcchHHHHhcCccccCCCcchhhhhhccchHHHHHHHHHHHHHHhcC
Confidence            866666666655321   11  1001        1    1135678889999995

>KOG3231 consensus Predicted assembly/vacuolar sorting protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.7e-39  Score=250.84  Aligned_cols=198  Identities=23%  Similarity=0.375  Sum_probs=183.9

Q ss_pred             hHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028800            4 TEKLLNQIMDLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLD   83 (203)
Q Consensus         4 ~~~l~~~~~~lr~~~r~L~re~~kle~ee~k~~~~iK~a~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aqL~~v~~~l~   83 (203)
                      +.-.++.-+.||.+.|.|+|+.++++++|++++.+||+.++.||.++||+||++||..|+|..+-+.+++++.+++.|-.
T Consensus        10 ke~~ren~ReLRkt~RdierdRr~me~~Ek~LElEIkk~Aa~GnndAcr~LAKQLV~lRkQKtrt~a~s~ki~s~~~QnK   89 (208)
T KOG3231|consen   10 KEVIRENNRELRKTQRDIERDRRAMEKQEKQLELEIKKMAAIGNNDACRVLAKQLVHLRKQKTRTFAVSSKITSMSTQNK   89 (208)
T ss_pred             HHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhHHHHH
Confidence            34466777899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHHHHh
Q 028800           84 TQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDY  163 (203)
Q Consensus        84 ~a~~~~~~~~~m~~~~~~m~~~n~~m~l~~i~~~m~~f~~e~~~~~i~~e~m~d~~~~~~~~~~~eeevd~ll~qv~~E~  163 (203)
                      .+.++.+++++|...+++|+.+|+.|+|+++..+|.+|++..++|++.+|||+|++|+.++.+.++||.+.+|+||+||+
T Consensus        90 ~M~s~~km~~AMgTTaKTM~amNk~M~pek~~~tmr~FQ~anmKMemTeEMiNDTLDdild~sgDeeEs~aiVNqVLDEI  169 (208)
T KOG3231|consen   90 VMNSQMKMAGAMGTTAKTMQAMNKKMDPEKTLQTMRNFQKANMKMEMTEEMINDTLDDILDGSGDEEESQAIVNQVLDEI  169 (208)
T ss_pred             HHHHHHHHHHHhchHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHhcCCCcHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhcCCCCCCCC-CCCcccccCCcHHHHHHHHHHHhc
Q 028800          164 GLEVSVGLPQPAAH-AVPTKQQEKVDEDDLSRRLAELKA  201 (203)
Q Consensus       164 gi~~~~~l~~~p~~-~~~~~~~~~~~~ddl~~RL~~Lr~  201 (203)
                      ||++++++.++|+. |.+.........+|+++.|++||+
T Consensus       170 GIEisgKma~~P~a~s~~~~st~kat~~Die~QLa~Lrs  208 (208)
T KOG3231|consen  170 GIEISGKMAKAPSARSLPSASTSKATISDIERQLAALRS  208 (208)
T ss_pred             hhhhcchhccCCccCCCCccccCCCcHHHHHHHHHHhcC
Confidence            99999999999954 333222223568999999999985

>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7

Probab=99.94  E-value=1.5e-26  Score=183.88  Aligned_cols=168  Identities=26%  Similarity=0.354  Sum_probs=138.6

Q ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028800            9 NQIMDLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKM   88 (203)
Q Consensus         9 ~~~~~lr~~~r~L~re~~kle~ee~k~~~~iK~a~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aqL~~v~~~l~~a~~~   88 (203)
                      +++++|+.+.+.|++++.+|+.+.+++..++|+++++|+...|++|++..++.+++..+++.+..+|+++..+|+++..+
T Consensus         1 eai~~Lk~~~~~L~~~~~~le~~i~~~~~~~k~~~~~~~~~~A~~~lk~~k~~~k~~~~~~~~~~~l~~~~~~ie~a~~~   80 (171)
T PF03357_consen    1 EAILKLKKTIRRLEKQIKRLEKKIKKLEKKAKKAIKKGNKERAKIYLKRKKRLEKQLEKLLNQLSNLESVLLQIETAQSN   80 (171)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHHHHhcchh-
Q 028800           89 TTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEV-  167 (203)
Q Consensus        89 ~~~~~~m~~~~~~m~~~n~~m~l~~i~~~m~~f~~e~~~~~i~~e~m~d~~~~~~~~~~~eeevd~ll~qv~~E~gi~~-  167 (203)
                      ..++.+|+.++++|+.+|+.+++++|..+|++|..+++.++.++++|++.++..  +..+++|++++++++.+|++.+. 
T Consensus        81 ~~v~~al~~~~~~Lk~~~~~i~~~~v~~~~d~~~e~~e~~~ei~~~l~~~~~~~--~~~dd~ele~eL~~l~~e~~~~~~  158 (171)
T PF03357_consen   81 QQVVKALKQSSKALKKINKQINLDKVEKLMDDFQEEMEDQDEISEALSDSMDQV--DDVDDEELEEELEQLEDEIEEEEE  158 (171)
T ss_dssp             HHHSSS----SHHHHHHHHSTTSCCHHHHHHHHHHHHHHHTS------------------TTSTTCHHHHHHHCCCTTS-
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHccccCC--CCCCHHHHHHHHHHHHHHHhhhhh
Confidence            999999999999999999999999999999999999999999999999988664  35678899999999999999998 


Q ss_pred             -hcCCCCCCCCC
Q 028800          168 -SVGLPQPAAHA  178 (203)
Q Consensus       168 -~~~l~~~p~~~  178 (203)
                       ...||++|+++
T Consensus       159 ~~~~lp~~P~~~  170 (171)
T PF03357_consen  159 EKQQLPSVPSTE  170 (171)
T ss_dssp             -SS-SS---HH-
T ss_pred             ccccCCcCCCCC
Confidence             88899888653

The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.

>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.62  E-value=1.6e-13  Score=110.73  Aligned_cols=171  Identities=18%  Similarity=0.209  Sum_probs=129.3

Q ss_pred             hHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 028800            4 TEKLLNQIMDLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVAR--   81 (203)
Q Consensus         4 ~~~l~~~~~~lr~~~r~L~re~~kle~ee~k~~~~iK~a~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aqL~~v~~~--   81 (203)
                      ..+..+.+-+||.+..-|++..   +.-++++..++...+++.-...-|...+.|-|+|.+..+|.+....|..+..|  
T Consensus        16 ~~t~~eaI~kLrEteemL~KKq---e~Le~ki~~e~e~~A~k~~tkNKR~AlqaLkrKK~~E~qL~qidG~l~tie~Qr~   92 (221)
T KOG1656|consen   16 KPTPQEAIQKLRETEEMLEKKQ---EFLEKKIEQEVENNARKYGTKNKRMALQALKRKKRYEKQLAQIDGTLSTIEFQRE   92 (221)
T ss_pred             CCChHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            3456788999999988888766   55566777777776665556666666666667888888888888888888777  


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--CCCCCCCchHHHHHHHHH
Q 028800           82 -LDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMA--GSTSLSTPEGEVNSLMQQ  158 (203)
Q Consensus        82 -l~~a~~~~~~~~~m~~~~~~m~~~n~~m~l~~i~~~m~~f~~e~~~~~i~~e~m~d~~~--~~~~~~~~eeevd~ll~q  158 (203)
                       |+.+.++..+..+|..++++|+.+++.||+++|..+|++...|.+.+..|++.|+..+.  ..+|+++...|.|+|-++
T Consensus        93 alEnA~~n~Evl~~m~~~A~AmK~~h~~mDiDkVdd~MdeI~eQqe~a~eIseAiS~Pvg~~a~~DEDEL~~ELdeLeqe  172 (221)
T KOG1656|consen   93 ALENANTNTEVLDAMGSAAKAMKAAHKNMDIDKVDDLMDEIAEQQEVAEEISEAISAPVGFGADFDEDELMAELDELEQE  172 (221)
T ss_pred             HHHcccccHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHhCccccccccCHHHHHHHHHHHHHH
Confidence             68899999999999999999999999999999999999999999999999888888764  224434444455555555


Q ss_pred             HHHHhcchhhc---CCCCCCCC
Q 028800          159 VADDYGLEVSV---GLPQPAAH  177 (203)
Q Consensus       159 v~~E~gi~~~~---~l~~~p~~  177 (203)
                      .++.--+++..   .||++|+.
T Consensus       173 eld~~ll~~~~p~v~LP~vPs~  194 (221)
T KOG1656|consen  173 ELDKELLDIRAPPVPLPDVPSI  194 (221)
T ss_pred             HHHHHHhccCCCCCCCCCCCcc
Confidence            55554444333   34555543

>PTZ00464 SNF-7-like protein; Provisional

Probab=99.62  E-value=1.5e-13  Score=113.44  Aligned_cols=171  Identities=12%  Similarity=0.093  Sum_probs=133.5

Q ss_pred             hHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Q 028800            4 TEKLLNQIMDLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQM----NYLRLASRLDAVV   79 (203)
Q Consensus         4 ~~~l~~~~~~lr~~~r~L~re~~kle~ee~k~~~~iK~a~kkg~~~~ari~Ak~lvr~rk~~~----~l~~~~aqL~~v~   79 (203)
                      ..++.+.+..+|.....|++.+.+++.+..+.+..+++.-..++ ...|.-|..++|.||...    ++......|+.+.
T Consensus        13 ~~t~~d~~~~l~~r~~~l~kKi~~ld~E~~~ak~~~k~~~~~~~-~~~K~~Al~~LK~KK~~E~ql~~l~~q~~nleq~~   91 (211)
T PTZ00464         13 KPTLEDASKRIGGRSEVVDARINKIDAELMKLKEQIQRTRGMTQ-SRHKQRAMQLLQQKRMYQNQQDMMMQQQFNMDQLQ   91 (211)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35799999999999999999999999988888877765433221 235667888888776444    4667777888889


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHH
Q 028800           80 ARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQV  159 (203)
Q Consensus        80 ~~l~~a~~~~~~~~~m~~~~~~m~~~n~~m~l~~i~~~m~~f~~e~~~~~i~~e~m~d~~~~~~~~~~~eeevd~ll~qv  159 (203)
                      +.|+++..+..+..+|+.++.+|+.+|+.+++++|..+|+++..+++..+.++++++..+...  +..+++|++..++.+
T Consensus        92 ~~ie~a~~~~~vv~amk~g~kaLK~~~k~i~id~Vd~l~Dei~E~~e~~~EI~e~Ls~~~~~~--~~~DEdELe~ELe~L  169 (211)
T PTZ00464         92 FTTESVKDTKVQVDAMKQAAKTLKKQFKKLNVDKVEDLQDELADLYEDTQEIQEIMGRAYDVP--DDIDEDEMLGELDAL  169 (211)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC--CCCCHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999988888754321  235677777777777


Q ss_pred             HHHhcchhh----cCCCCCCCC
Q 028800          160 ADDYGLEVS----VGLPQPAAH  177 (203)
Q Consensus       160 ~~E~gi~~~----~~l~~~p~~  177 (203)
                      ..|...+..    ...|++|+.
T Consensus       170 e~e~~~e~~~~~l~~~~~~p~~  191 (211)
T PTZ00464        170 DFDMEKEADASYLADALAVPGT  191 (211)
T ss_pred             HHHHhccccchhhhccccCCCC
Confidence            776533222    244555554

>KOG2910 consensus Uncharacterized conserved protein predicted to be involved in protein sorting [General function prediction only]

Probab=99.59  E-value=9.8e-13  Score=105.20  Aligned_cols=160  Identities=15%  Similarity=0.245  Sum_probs=134.0

Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH---HHHH
Q 028800            7 LLNQIMDLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQMNYL-RLASRLDAV---VARL   82 (203)
Q Consensus         7 l~~~~~~lr~~~r~L~re~~kle~ee~k~~~~iK~a~kkg~~~~ari~Ak~lvr~rk~~~~l~-~~~aqL~~v---~~~l   82 (203)
                      .+.++..||.+.+.|-++.+++++.....+..+|++++.|..+.|+.+.    +++++...|+ +...||..+   .+.|
T Consensus        14 ~DrAIL~lK~QRdkl~qyqkR~e~~le~Er~~Ar~lird~rKdrAlllL----KkKryQE~Ll~qt~~qL~nlEqmvsdi   89 (209)
T KOG2910|consen   14 QDRAILSLKTQRDKLKQYQKRLEKQLEAERQLARDLIRDGRKDRALLLL----KKKRYQEELLTQTDNQLINLEQMVSDI   89 (209)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6788999999999999999999999999999999999999988876655    7666666665 677777666   4557


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHHHH
Q 028800           83 DTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADD  162 (203)
Q Consensus        83 ~~a~~~~~~~~~m~~~~~~m~~~n~~m~l~~i~~~m~~f~~e~~~~~i~~e~m~d~~~~~~~~~~~eeevd~ll~qv~~E  162 (203)
                      +......+|..+++..+.+++++|+.++++.|.++|++-...++..+.+++|+++.|+.     ++++++.+.++-+..|
T Consensus        90 Eft~vqk~V~~gLk~GN~~lkkl~~~~~ideV~rimddt~ea~~YQ~Ein~~L~~~ls~-----~dEddi~~EldaLese  164 (209)
T KOG2910|consen   90 EFTQVQKKVMEGLKQGNEALKKLQQEFDIDEVDRIMDDTQEAIEYQDEINAILSGSLSA-----EDEDDILAELDALESE  164 (209)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhHHHHHHHHHHHHHHHHhhccc-----ccHHHHHHHHHHHHHH
Confidence            88888899999999999999999999999999999999999999999999999998885     3455565555555555


Q ss_pred             hcchhhcCCCCCCCC
Q 028800          163 YGLEVSVGLPQPAAH  177 (203)
Q Consensus       163 ~gi~~~~~l~~~p~~  177 (203)
                      ...+  .++|..|+.
T Consensus       165 ~~~e--~e~PevPs~  177 (209)
T KOG2910|consen  165 LEVE--AELPEVPST  177 (209)
T ss_pred             hhhh--hhcCCCCCC
Confidence            4333  678888765

>PTZ00446 vacuolar sorting protein SNF7-like; Provisional

Probab=99.57  E-value=1.1e-12  Score=106.51  Aligned_cols=149  Identities=11%  Similarity=0.166  Sum_probs=121.8

Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH---HHH
Q 028800            6 KLLNQIMDLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRT-EQMNYLRLASRLDAV---VAR   81 (203)
Q Consensus         6 ~l~~~~~~lr~~~r~L~re~~kle~ee~k~~~~iK~a~kkg~~~~ari~Ak~lvr~rk-~~~~l~~~~aqL~~v---~~~   81 (203)
                      +..+.+.+||.+...|.+...+|+..-.++...+|+++++|+...    |..++|.|| +...+.++.+++..+   ...
T Consensus        24 ~~~~AIl~Lk~~~~~L~krq~~Le~kIe~e~~~Ak~~~~~~kk~~----Al~~LkrKK~~E~ql~q~~~ql~nLEq~~~~   99 (191)
T PTZ00446         24 EIYKAILKNREAIDALEKKQVQVEKKIKQLEIEAKQKVEQNQMSN----AKILLKRKKLYEQEIENILNNRLTLEDNMIN   99 (191)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            588999999999999999999999999999999999999999665    555556444 444444555555555   566


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHHH
Q 028800           82 LDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVAD  161 (203)
Q Consensus        82 l~~a~~~~~~~~~m~~~~~~m~~~n~~m~l~~i~~~m~~f~~e~~~~~i~~e~m~d~~~~~~~~~~~eeevd~ll~qv~~  161 (203)
                      |+++..+..+..+|+.++.+|+.+|+.|++++|..+|+++..+++..+.++++++..+    .+..+++|++..++.+..
T Consensus       100 iE~a~~~~ev~~aLk~g~~aLK~~~k~~~idkVd~lmDei~E~~e~~~EIseaLs~~~----~~~~DEdELe~ELe~Le~  175 (191)
T PTZ00446        100 LENMHLHKIAVNALSYAANTHKKLNNEINTQKVEKIIDTIQENKDIQEEINQALSFNL----LNNVDDDEIDKELDLLKE  175 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCC----CCCCCHHHHHHHHHHHHH
Confidence            8999999999999999999999999999999999999999999999999988777532    123567777777776654


Q ss_pred             H
Q 028800          162 D  162 (203)
Q Consensus       162 E  162 (203)
                      |
T Consensus       176 e  176 (191)
T PTZ00446        176 Q  176 (191)
T ss_pred             H
Confidence            3

>COG5491 VPS24 Conserved protein implicated in secretion [Cell motility and secretion]

Probab=99.53  E-value=9.3e-13  Score=107.65  Aligned_cols=174  Identities=26%  Similarity=0.308  Sum_probs=118.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028800           21 LQRQARKCEKEEKAEKLKVKKAIEKG--NMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANI   98 (203)
Q Consensus        21 L~re~~kle~ee~k~~~~iK~a~kkg--~~~~ari~Ak~lvr~rk~~~~l~~~~aqL~~v~~~l~~a~~~~~~~~~m~~~   98 (203)
                      +++++.++-.+.+...+....+.++.  +.-..+++++.+++.+++..|+...+++|.++...+....       +|.++
T Consensus         5 ~~~~~~k~~~~~k~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~srL~~~~sRLqs~~~~~~e~~-------~m~~v   77 (204)
T COG5491           5 LERQAKKLVRELKQEAKKGQVLLNEIAKKAPNRRRLAEELYKLRKARSRLDASISRLQSLDTMLFEKV-------VMRQV   77 (204)
T ss_pred             HHHHHHHhhhhhhhHhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH
Confidence            56666666666666555555554433  4445777777777777666666666666665555555444       55555


Q ss_pred             HHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHH---HHHHhhhcCCCC--CCCchHHHHHHHHHHHHHhcchhhcCCC
Q 028800           99 VKSLESSLATGN-LQKMSETMDSFEKQFVNMEVQA---EFMESAMAGSTS--LSTPEGEVNSLMQQVADDYGLEVSVGLP  172 (203)
Q Consensus        99 ~~~m~~~n~~m~-l~~i~~~m~~f~~e~~~~~i~~---e~m~d~~~~~~~--~~~~eeevd~ll~qv~~E~gi~~~~~l~  172 (203)
                      +..|...+..|+ ++.|.++|+.|+..+..++...   ++|.+.++...+  ..++.+++|+.++.|++|+|+++.....
T Consensus        78 ~~~~~~a~~~mnel~~i~ri~~~~et~~~~mE~~~~~le~m~e~~~v~~~~~v~~~l~~lde~v~~v~pEi~lel~~~~~  157 (204)
T COG5491          78 SGDMAKAAMYMNELESIRRIMQLFETQFLALELVQLRLETMDELMDVVVGDPVLEDLEELDELVNKVLPEIGLELDESEQ  157 (204)
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhhhhHHHHHHHHHhhchhhhhhhhhHhh
Confidence            555555666666 8889999999999999999777   677777766664  3577889999999999999999995444


Q ss_pred             CCCC-------CCCC-ccc-------ccCCcHHHHHHHHHHHhc
Q 028800          173 QPAA-------HAVP-TKQ-------QEKVDEDDLSRRLAELKA  201 (203)
Q Consensus       173 ~~p~-------~~~~-~~~-------~~~~~~ddl~~RL~~Lr~  201 (203)
                      +.|.       .|.. .++       ++...++.|.+||..|++
T Consensus       158 ~~~~~~~~~~~~~a~~~~ea~~ileea~~~aE~~l~e~~~~L~~  201 (204)
T COG5491         158 SLPANVVENGSVPAAVSPEARKILEEAEKIAEDRLQERLRELPA  201 (204)
T ss_pred             cchhhhhcccccccccChhhhhhHHHHHhhHHHHHHHHHHhccc
Confidence            4332       1111 111       122348999999999985

>KOG2911 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.15  E-value=1.2e-08  Score=90.87  Aligned_cols=169  Identities=15%  Similarity=0.214  Sum_probs=143.8

Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028800            6 KLLNQIMDLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQ   85 (203)
Q Consensus         6 ~l~~~~~~lr~~~r~L~re~~kle~ee~k~~~~iK~a~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aqL~~v~~~l~~a   85 (203)
                      .++-.+.+|+.+.-.|.|++..|+.+-++...+++.+.+.|....|..|++.--+.-|...+......+|.+|-.+|.++
T Consensus       230 ~~D~~V~~L~~~~~~L~kqie~L~qeie~~~~~~r~~~k~g~K~iA~~ylr~rk~~eK~~er~~~~l~~l~~vl~~Id~s  309 (439)
T KOG2911|consen  230 EIDGSVADLIQARAKLAKQIEFLEQEIEKSKEKLRQALKEGKKQIAITYLRARKLLEKDLERKVSSLNNLETVLSQIDNS  309 (439)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Confidence            45667889999999999999999999999999999999999999999999888888888889999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHHHHhc
Q 028800           86 AKMTTINKSMANIVKSLESSLA-TGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYG  164 (203)
Q Consensus        86 ~~~~~~~~~m~~~~~~m~~~n~-~m~l~~i~~~m~~f~~e~~~~~i~~e~m~d~~~~~~~~~~~eeevd~ll~qv~~E~g  164 (203)
                      .++.-|..+++.++.+|+.++. ...++++..+|++...-++....+++.|....-+..  +-++|+++..+.++..+..
T Consensus       310 ~~nkvvl~AyksGs~alK~il~~~~s~ekVed~Ldev~et~d~~~EV~~~la~~~~~~~--d~~de~lEkEL~~L~~D~~  387 (439)
T KOG2911|consen  310 QTNKVVLQAYKSGSEALKAILAQGGSTEKVEDVLDEVNETLDRQEEVEDALASYNVNNI--DFEDEDLEKELEDLEADEK  387 (439)
T ss_pred             cccHHHHHHHHHhHHHHHHHHhccCChhhHHHHHHHHHHHHhhHHHHHHHHhcCCCCCC--ccchHHHHHHHHHHHhccc
Confidence            9999999999999999999999 567888999999999999998888777666544432  4567888888888887665


Q ss_pred             chhhcCCCCCCC
Q 028800          165 LEVSVGLPQPAA  176 (203)
Q Consensus       165 i~~~~~l~~~p~  176 (203)
                      -.-+-.+|..|.
T Consensus       388 k~e~~~lp~~~~  399 (439)
T KOG2911|consen  388 KNEDLVLPLNSV  399 (439)
T ss_pred             cCCccCCCCCCc
Confidence            433334444443

>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.56  E-value=4.8e-05  Score=61.66  Aligned_cols=152  Identities=13%  Similarity=0.199  Sum_probs=116.9

Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-hhHHHHHHHHHHHHHHHHHHHHHHHHH-------HH
Q 028800            5 EKLLNQIMDLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGN-MDGARIYAENSIRKRTEQMNYLRLASR-------LD   76 (203)
Q Consensus         5 ~~l~~~~~~lr~~~r~L~re~~kle~ee~k~~~~iK~a~kkg~-~~~ari~Ak~lvr~rk~~~~l~~~~aq-------L~   76 (203)
                      -+|.+++-.+......++..|.+|+.+=-+++.+|++. +-|. ..+.|.-|=.+++.||   .|...+.+       |+
T Consensus        15 psL~dai~~v~~r~dSve~KIskLDaeL~k~~~Qi~k~-R~gpaq~~~KqrAlrVLkQKK---~yE~q~d~L~~QsfNMe   90 (218)
T KOG1655|consen   15 PSLQDAIDSVNKRSDSVEKKISKLDAELCKYKDQIKKT-RPGPAQNALKQRALRVLKQKK---MYENQKDSLDQQSFNME   90 (218)
T ss_pred             hhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhc-CCCcchhHHHHHHHHHHHHHH---HHHHHHHHHHHhcccHH
Confidence            46899999999999999999999999999999999987 4443 3445555555555444   34444444       45


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCchHHHHHHH
Q 028800           77 AVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLM  156 (203)
Q Consensus        77 ~v~~~l~~a~~~~~~~~~m~~~~~~m~~~n~~m~l~~i~~~m~~f~~e~~~~~i~~e~m~d~~~~~~~~~~~eeevd~ll  156 (203)
                      .+.+..+...-+...+.+|+...+.|+...+.+++++|...=+++.-=|+..+.++|.++-..+...   .++++.+..+
T Consensus        91 Qa~~t~e~LKdtq~Tv~AmK~~~k~mK~~ykkvnId~IedlQDem~Dlmd~a~EiQE~Lgr~y~~pe---ide~dL~aEL  167 (218)
T KOG1655|consen   91 QANFTAESLKDTQATVAAMKDTNKEMKKQYKKVNIDKIEDLQDEMEDLMDQADEIQEVLGRNYNTPD---IDEADLDAEL  167 (218)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC---cCHHHHHHHH
Confidence            5556666667777788999999999999999999999998888888888899999988888765543   5567777777


Q ss_pred             HHHHHHh
Q 028800          157 QQVADDY  163 (203)
Q Consensus       157 ~qv~~E~  163 (203)
                      +-+.+|.
T Consensus       168 daL~~E~  174 (218)
T KOG1655|consen  168 DALGQEL  174 (218)
T ss_pred             HHHHhHh
Confidence            7775554

>COG5491 VPS24 Conserved protein implicated in secretion [Cell motility and secretion]

Probab=98.02  E-value=0.00018  Score=59.17  Aligned_cols=126  Identities=17%  Similarity=0.137  Sum_probs=77.7

Q ss_pred             HHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028800           28 CEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQM--NYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESS  105 (203)
Q Consensus        28 le~ee~k~~~~iK~a~kkg~~~~ari~Ak~lvr~rk~~~--~l~~~~aqL~~v~~~l~~a~~~~~~~~~m~~~~~~m~~~  105 (203)
                      +++..++.....|.-.++|.....++-.+.-.++|....  ++..+.++|+.+.+||++..+       +-.-.-+|..+
T Consensus         5 ~~~~~~k~~~~~k~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~srL~~~~sRLqs~~~-------~~~e~~~m~~v   77 (204)
T COG5491           5 LERQAKKLVRELKQEAKKGQVLLNEIAKKAPNRRRLAEELYKLRKARSRLDASISRLQSLDT-------MLFEKVVMRQV   77 (204)
T ss_pred             HHHHHHHhhhhhhhHhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence            778888888889988888876664444444444444444  778888888888888877644       45566778888


Q ss_pred             HhcCCHHHHHHH----HHHHHHHHHHHHHHHHHHH---hhhcCCCCCCCc--hHHHHHHHHHHH
Q 028800          106 LATGNLQKMSET----MDSFEKQFVNMEVQAEFME---SAMAGSTSLSTP--EGEVNSLMQQVA  160 (203)
Q Consensus       106 n~~m~l~~i~~~----m~~f~~e~~~~~i~~e~m~---d~~~~~~~~~~~--eeevd~ll~qv~  160 (203)
                      ...+........    +..+...++.+...=|.+-   +.+....+...+  ..+.++.+++..
T Consensus        78 ~~~~~~a~~~mnel~~i~ri~~~~et~~~~mE~~~~~le~m~e~~~v~~~~~v~~~l~~lde~v  141 (204)
T COG5491          78 SGDMAKAAMYMNELESIRRIMQLFETQFLALELVQLRLETMDELMDVVVGDPVLEDLEELDELV  141 (204)
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhhhhHHHHHHHH
Confidence            766555544322    2345556666665555555   455444444443  334444444444

>PTZ00464 SNF-7-like protein; Provisional

Probab=97.80  E-value=0.014  Score=48.41  Aligned_cols=51  Identities=20%  Similarity=0.192  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028800           52 RIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSL  102 (203)
Q Consensus        52 ri~Ak~lvr~rk~~~~l~~~~aqL~~v~~~l~~a~~~~~~~~~m~~~~~~m  102 (203)
                      |.|=+++-+...+..++..+...++.......+..++..-+.+|+++-+.|
T Consensus        71 K~~E~ql~~l~~q~~nleq~~~~ie~a~~~~~vv~amk~g~kaLK~~~k~i  121 (211)
T PTZ00464         71 RMYQNQQDMMMQQQFNMDQLQFTTESVKDTKVQVDAMKQAAKTLKKQFKKL  121 (211)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            444444555555555555555555555555555555555555555544443

>PRK10698 phage shock protein PspA; Provisional

Probab=97.52  E-value=0.021  Score=47.72  Aligned_cols=108  Identities=18%  Similarity=0.122  Sum_probs=77.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHH-------HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q 028800           16 FTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARI-------YAENSIRKRTEQMNYL----RLASRLDAVVARLDT   84 (203)
Q Consensus        16 ~~~r~L~re~~kle~ee~k~~~~iK~a~kkg~~~~ari-------~Ak~lvr~rk~~~~l~----~~~aqL~~v~~~l~~   84 (203)
                      -..+.+.|+...++....+...++..|+.+|+.+-||.       |+..+-..+.+.....    .+..++..+..+|+.
T Consensus        52 A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~e  131 (222)
T PRK10698         52 AEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSE  131 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35677999999999999999999999999999999998       8877777666655443    456666666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 028800           85 QAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEK  123 (203)
Q Consensus        85 a~~~~~~~~~m~~~~~~m~~~n~~m~l~~i~~~m~~f~~  123 (203)
                      +.+-..+--+=..++.+..++|..+.--.....|..|++
T Consensus       132 ak~k~~~L~aR~~~A~a~~~~~~~~~~~~~~~a~~~f~r  170 (222)
T PRK10698        132 TRARQQALMLRHQAASSSRDVRRQLDSGKLDEAMARFES  170 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence            666555555555666666666665554444556666555

>KOG3231 consensus Predicted assembly/vacuolar sorting protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.25  E-value=0.038  Score=44.00  Aligned_cols=164  Identities=12%  Similarity=0.222  Sum_probs=96.9

Q ss_pred             chHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH---------HHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 028800            3 NTEKLLNQIMDLKFTSKSLQRQARKCEKEEKAEKLK---------VKKAIEKGNMDGARIYAENSIRKRTEQMNYLRLAS   73 (203)
Q Consensus         3 ~~~~l~~~~~~lr~~~r~L~re~~kle~ee~k~~~~---------iK~a~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~a   73 (203)
                      |.-.|+.+.+.|-...|.++++-++||.+-++.-..         .|+.+.-.+ .-.|.||        ...+...+..
T Consensus        16 n~ReLRkt~RdierdRr~me~~Ek~LElEIkk~Aa~GnndAcr~LAKQLV~lRk-QKtrt~a--------~s~ki~s~~~   86 (208)
T KOG3231|consen   16 NNRELRKTQRDIERDRRAMEKQEKQLELEIKKMAAIGNNDACRVLAKQLVHLRK-QKTRTFA--------VSSKITSMST   86 (208)
T ss_pred             hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHH-hhhhhhh--------hhhhhhhhHH
Confidence            345688889999999999999999999988876432         222222111 1123444        1222333333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCchHHHH
Q 028800           74 RLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVN  153 (203)
Q Consensus        74 qL~~v~~~l~~a~~~~~~~~~m~~~~~~m~~~n~~m~l~~i~~~m~~f~~e~~~~~i~~e~m~d~~~~~~~~~~~eeevd  153 (203)
                      |=-.+.+++.-+..|....+.|+-..+.|.----.-+...+++.  +...++. -.++.+.++|.|+..-+.++...-|+
T Consensus        87 QnK~M~s~~km~~AMgTTaKTM~amNk~M~pek~~~tmr~FQ~a--nmKMemT-eEMiNDTLDdild~sgDeeEs~aiVN  163 (208)
T KOG3231|consen   87 QNKVMNSQMKMAGAMGTTAKTMQAMNKKMDPEKTLQTMRNFQKA--NMKMEMT-EEMINDTLDDILDGSGDEEESQAIVN  163 (208)
T ss_pred             HHHHHHHHHHHHHHhchHHHHHHHHHccCCHHHHHHHHHHHHHH--HHHhhhH-HHHHHhhHHHHhcCCCcHHHHHHHHH
Confidence            33334455544445555555555544444322111112233222  2222222 24678999999999988888889999


Q ss_pred             HHHHHHHHHhcchhhcCCCCCCCCC
Q 028800          154 SLMQQVADDYGLEVSVGLPQPAAHA  178 (203)
Q Consensus       154 ~ll~qv~~E~gi~~~~~l~~~p~~~  178 (203)
                      .+++++=-|+...+..--...|.+.
T Consensus       164 qVLDEIGIEisgKma~~P~a~s~~~  188 (208)
T KOG3231|consen  164 QVLDEIGIEISGKMAKAPSARSLPS  188 (208)
T ss_pred             HHHHHhhhhhcchhccCCccCCCCc
Confidence            9999999999988876443445543

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=97.20  E-value=0.095  Score=43.29  Aligned_cols=126  Identities=18%  Similarity=0.201  Sum_probs=76.9

Q ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHH
Q 028800           12 MDLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQMNYL-----------RLASRLDAVVA   80 (203)
Q Consensus        12 ~~lr~~~r~L~re~~kle~ee~k~~~~iK~a~kkg~~~~ari~Ak~lvr~rk~~~~l~-----------~~~aqL~~v~~   80 (203)
                      -......+.+.+++..++....+...++..|+++|+.+.||.++........+...|.           .++.++..+..
T Consensus        47 a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~  126 (221)
T PF04012_consen   47 ARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEA  126 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444566678999999999999999999999999999999988877777666555444           33344444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028800           81 RLDTQAKMTTINKSMANIVKSLESSL---ATGNLQKMSETMDSFEKQFVNMEVQAEFMES  137 (203)
Q Consensus        81 ~l~~a~~~~~~~~~m~~~~~~m~~~n---~~m~l~~i~~~m~~f~~e~~~~~i~~e~m~d  137 (203)
                      +|....+-..+..+-..++..-..++   ..+++......+..++.....+.-..+.+.+
T Consensus       127 kl~e~k~k~~~l~ar~~~a~a~~~~~~~~~~~~~~~a~~~~er~e~ki~~~ea~a~a~~e  186 (221)
T PF04012_consen  127 KLEELKSKREELKARENAAKAQKKVNEALASFSVSSAMDSFERMEEKIEEMEARAEASAE  186 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55444444444433333333333333   3444444444555555555554444444443

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>PTZ00446 vacuolar sorting protein SNF7-like; Provisional

Probab=97.19  E-value=0.093  Score=42.92  Aligned_cols=86  Identities=12%  Similarity=-0.011  Sum_probs=51.2

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHH
Q 028800           14 LKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRK---------RTEQMNYLRLASRLDAVVARLDT   84 (203)
Q Consensus        14 lr~~~r~L~re~~kle~ee~k~~~~iK~a~kkg~~~~ari~Ak~lvr~---------rk~~~~l~~~~aqL~~v~~~l~~   84 (203)
                      .+.++=.|...+..|++.+..+..+|...-.         .|+..++.         =+....|...-.++++-...|++
T Consensus        25 ~~~AIl~Lk~~~~~L~krq~~Le~kIe~e~~---------~Ak~~~~~~kk~~Al~~LkrKK~~E~ql~q~~~ql~nLEq   95 (191)
T PTZ00446         25 IYKAILKNREAIDALEKKQVQVEKKIKQLEI---------EAKQKVEQNQMSNAKILLKRKKLYEQEIENILNNRLTLED   95 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556667888888888888888888765432         23444342         22333344555566666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc
Q 028800           85 QAKMTTINKSMANIVKSLESSLAT  108 (203)
Q Consensus        85 a~~~~~~~~~m~~~~~~m~~~n~~  108 (203)
                      +..+......=..+..+|+..++.
T Consensus        96 ~~~~iE~a~~~~ev~~aLk~g~~a  119 (191)
T PTZ00446         96 NMINLENMHLHKIAVNALSYAANT  119 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666555555555555666666554

>PF03398 Ist1: Regulator of Vps4 activity in the MVB pathway; InterPro: IPR005061 This is a eukaryotic protein family of unknown function

Probab=97.19  E-value=0.0063  Score=48.56  Aligned_cols=151  Identities=21%  Similarity=0.339  Sum_probs=103.4

Q ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028800           12 MDLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTI   91 (203)
Q Consensus        12 ~~lr~~~r~L~re~~kle~ee~k~~~~iK~a~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aqL~~v~~~l~~a~~~~~~   91 (203)
                      ..||.....|.--.++.....+..+.+|-..++.|+.+.||+-+.++|+-.....-|.-+---.+-+..++.........
T Consensus         2 ~~lkla~~Rl~~l~~K~~~~~~~~rkdIa~LL~~g~~~~Ar~rvE~li~ed~~~e~~e~Le~yce~l~~r~~~i~~~k~~   81 (165)
T PF03398_consen    2 TQLKLAISRLKLLQNKRQAQAKQARKDIAQLLKNGKEESARIRVEQLIREDNMIEAYEILELYCELLLARFSLIEKSKEC   81 (165)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCT-TSS
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Confidence            46888889999999999999999999999999999999999999999999999998888888888887777666555444


Q ss_pred             HHHHHHHHHH-HHHHHhcCCHHHHHHHHHH----HHHHHHHHH-------HHHHHHHhhhcCCCCCCCchHHHHHHHHHH
Q 028800           92 NKSMANIVKS-LESSLATGNLQKMSETMDS----FEKQFVNME-------VQAEFMESAMAGSTSLSTPEGEVNSLMQQV  159 (203)
Q Consensus        92 ~~~m~~~~~~-m~~~n~~m~l~~i~~~m~~----f~~e~~~~~-------i~~e~m~d~~~~~~~~~~~eeevd~ll~qv  159 (203)
                      -..+..+..+ +-...+.-++|++..+=.-    |.++|...-       +...++.- ++.   ..-+++.++.++.+|
T Consensus        82 p~~l~eAi~siiyAa~r~~elpEL~~vr~~l~~kyG~~f~~~a~~~~~~~Vn~~iv~k-Ls~---~~p~~~~v~~~L~eI  157 (165)
T PF03398_consen   82 PPELKEAISSIIYAAPRCGELPELQEVRKQLAEKYGKEFVEAAMENRDNGVNPRIVEK-LSV---KPPSEELVEKYLKEI  157 (165)
T ss_dssp             SCCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHCCC-HHHHHHHHTTTTTTS-HHHHHH-CS----S---CCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHhCHHHHHHHHHhcCCCcCHHHHHH-cCC---CCcCHHHHHHHHHHH
Confidence            4444444443 4444444588887665544    444443221       11111111 221   124467899999999


Q ss_pred             HHHhcch
Q 028800          160 ADDYGLE  166 (203)
Q Consensus       160 ~~E~gi~  166 (203)
                      +.|+|++
T Consensus       158 A~e~~i~  164 (165)
T PF03398_consen  158 AKEYGIP  164 (165)
T ss_dssp             HHHCT-S
T ss_pred             HHHcCCC
Confidence            9999975

; PDB: 3GGZ_B 3GGY_B 3FRR_A 3FRS_A.

>KOG3230 consensus Vacuolar assembly/sorting protein DID4 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.10  E-value=0.037  Score=45.15  Aligned_cols=152  Identities=14%  Similarity=0.205  Sum_probs=76.4

Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028800            6 KLLNQIMDLKFTSKSLQRQARKCEKEEKAEKLKVKKA---IEKGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARL   82 (203)
Q Consensus         6 ~l~~~~~~lr~~~r~L~re~~kle~ee~k~~~~iK~a---~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aqL~~v~~~l   82 (203)
                      .|....+.|-.+...|+-+-++|=.+-|+.-+.=...   +...|.-..|-|.+.++-.|.   ++...+-++.++-+.-
T Consensus        20 al~~a~ReleRer~~le~qeKklvaeIKk~AK~gq~~A~KimAkdLvRtR~~i~kf~~~ka---qiqaVSl~iQtlkss~   96 (224)
T KOG3230|consen   20 ALNKATRELERERQKLELQEKKLVAEIKKTAKQGQMDAVKIMAKDLVRTRRYIKKFQNMKA---QIQAVSLRIQTLKSST   96 (224)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhHH
Confidence            3455555555555555555555554444432211110   111223334556666655543   3345555666666665


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHHH
Q 028800           83 DTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFV-NMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVAD  161 (203)
Q Consensus        83 ~~a~~~~~~~~~m~~~~~~m~~~n~~m~l~~i~~~m~~f~~e~~-~~~i~~e~m~d~~~~~~~~~~~eeevd~ll~qv~~  161 (203)
                      .-+.+|..++++|....+.|.-    -.+.+|..-...-+..|+ +-.++.+.|+|+|++..++++.++=|..+++++=-
T Consensus        97 sma~aMkGaTkam~~MNrqmnl----pq~qkIm~eFekQse~Mdm~~Emm~daIDdal~~~edEEEtd~lvnqVLDEiGv  172 (224)
T KOG3230|consen   97 SMAQAMKGATKAMAGMNRQMNL----PQIQKIMQEFEKQSEIMDMKEEMMDDAIDDALGDDEDEEETDDLVNQVLDEIGV  172 (224)
T ss_pred             HHHHHHHHHHHHHHHHhhccCh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHcc
Confidence            6666666777766665443321    122222222222222222 12255677777777666666667777777777654


Q ss_pred             Hhc
Q 028800          162 DYG  164 (203)
Q Consensus       162 E~g  164 (203)
                      .++
T Consensus       173 dl~  175 (224)
T KOG3230|consen  173 DLA  175 (224)
T ss_pred             cHH
Confidence            444

>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7

Probab=97.00  E-value=0.005  Score=48.40  Aligned_cols=97  Identities=21%  Similarity=0.267  Sum_probs=57.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHH---HHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028800           17 TSKSLQRQARKCEKEEKAEKLKVKKA---IEKGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINK   93 (203)
Q Consensus        17 ~~r~L~re~~kle~ee~k~~~~iK~a---~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aqL~~v~~~l~~a~~~~~~~~   93 (203)
                      ++..|...+++|++..+++..+|+..   +++--..+-+..|+.+.|.++...   +...++.....+|+..........
T Consensus         2 ai~~Lk~~~~~L~~~~~~le~~i~~~~~~~k~~~~~~~~~~A~~~lk~~k~~~---k~~~~~~~~~~~l~~~~~~ie~a~   78 (171)
T PF03357_consen    2 AILKLKKTIRRLEKQIKRLEKKIKKLEKKAKKAIKKGNKERAKIYLKRKKRLE---KQLEKLLNQLSNLESVLLQIETAQ   78 (171)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCTT-HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677777788888888777777654   223333444566666666555433   344455666667777777667777


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHH
Q 028800           94 SMANIVKSLESSLATGNLQKMSETM  118 (203)
Q Consensus        94 ~m~~~~~~m~~~n~~m~l~~i~~~m  118 (203)
                      ....+..+|+..++.  +.++...|
T Consensus        79 ~~~~v~~al~~~~~~--Lk~~~~~i  101 (171)
T PF03357_consen   79 SNQQVVKALKQSSKA--LKKINKQI  101 (171)
T ss_dssp             HHHHHSSS----SHH--HHHHHHST
T ss_pred             HHHHHHHHHHHHHHH--HHHHHHhh
Confidence            777777777777666  44444444

The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.

>TIGR02977 phageshock_pspA phage shock protein A

Probab=96.80  E-value=0.23  Score=41.20  Aligned_cols=111  Identities=17%  Similarity=0.111  Sum_probs=64.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHH
Q 028800           17 TSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQM-----------NYLRLASRLDAVVARLDTQ   85 (203)
Q Consensus        17 ~~r~L~re~~kle~ee~k~~~~iK~a~kkg~~~~ari~Ak~lvr~rk~~~-----------~l~~~~aqL~~v~~~l~~a   85 (203)
                      ..+.++|++..++....+...+++.|+++|+.+-||-.+..-........           ....++.+|..+..+++.+
T Consensus        53 ~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~  132 (219)
T TIGR02977        53 DKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEA  132 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44668899999999999999999999999999988865433222222222           2224555555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 028800           86 AKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVN  127 (203)
Q Consensus        86 ~~~~~~~~~m~~~~~~m~~~n~~m~l~~i~~~m~~f~~e~~~  127 (203)
                      .+....-.+=...+..-..++..+.--.+...+..|++--++
T Consensus       133 k~k~~~l~ar~~~A~a~~~~~~~~~~~~~~~a~~~fer~e~k  174 (219)
T TIGR02977       133 RARQKALAIRHQAASSRLDVRRQLDSGRSDEAMARFEQYERR  174 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence            555443333333444444444433322233444555443333

Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.

>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.33  E-value=0.3  Score=40.14  Aligned_cols=131  Identities=13%  Similarity=0.245  Sum_probs=89.3

Q ss_pred             HHHHHHHHHHHHHHHHcCChhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028800           29 EKEEKAEKLKVKKAIEKGNMDGARIYAE----NSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLES  104 (203)
Q Consensus        29 e~ee~k~~~~iK~a~kkg~~~~ari~Ak----~lvr~rk~~~~l~~~~aqL~~v~~~l~~a~~~~~~~~~m~~~~~~m~~  104 (203)
                      ++.+.=+..+|-.-+..+    ||.|+.    -++..=+.+.+|.+--+|++++.+.|+.+..+..-.+.=.-+..+|+.
T Consensus        34 ~KKqe~Le~ki~~e~e~~----A~k~~tkNKR~AlqaLkrKK~~E~qL~qidG~l~tie~Qr~alEnA~~n~Evl~~m~~  109 (221)
T KOG1656|consen   34 EKKQEFLEKKIEQEVENN----ARKYGTKNKRMALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLDAMGS  109 (221)
T ss_pred             HHHHHHHHHHHHHHHHHH----HHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcccccHHHHHHHHH
Confidence            444444555555444332    555543    344444566778888899999999999998877777777778888888


Q ss_pred             HHhcCCHHHHHHHHHHHHHHHHHHH---HHHHHHHhhhcCCCCC--CCchHHHHHHHHHHHHHh
Q 028800          105 SLATGNLQKMSETMDSFEKQFVNME---VQAEFMESAMAGSTSL--STPEGEVNSLMQQVADDY  163 (203)
Q Consensus       105 ~n~~m~l~~i~~~m~~f~~e~~~~~---i~~e~m~d~~~~~~~~--~~~eeevd~ll~qv~~E~  163 (203)
                      .-+.|+--.=.--++++..-|++..   -+.+-|+++++...+.  ..+++|....++++.+|.
T Consensus       110 ~A~AmK~~h~~mDiDkVdd~MdeI~eQqe~a~eIseAiS~Pvg~~a~~DEDEL~~ELdeLeqee  173 (221)
T KOG1656|consen  110 AAKAMKAAHKNMDIDKVDDLMDEIAEQQEVAEEISEAISAPVGFGADFDEDELMAELDELEQEE  173 (221)
T ss_pred             HHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHhCccccccccCHHHHHHHHHHHHHHH
Confidence            8888554443334445555555544   3445578899999873  588999999999998876

>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]

Probab=95.29  E-value=1.5  Score=36.78  Aligned_cols=117  Identities=21%  Similarity=0.240  Sum_probs=73.0

Q ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH
Q 028800           10 QIMDLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQM-----------NYLRLASRLDAV   78 (203)
Q Consensus        10 ~~~~lr~~~r~L~re~~kle~ee~k~~~~iK~a~kkg~~~~ari~Ak~lvr~rk~~~-----------~l~~~~aqL~~v   78 (203)
                      .+-++.-..+.++|+..++.....++..+.+.|+.+||.+-||-.+...-..-+...           ...+++.++..+
T Consensus        46 ~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~L  125 (225)
T COG1842          46 ALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAAL  125 (225)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334455667789999999999999999999999999998887765544333322222           222344444444


Q ss_pred             HHHH---HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Q 028800           79 VARL---DTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNME  129 (203)
Q Consensus        79 ~~~l---~~a~~~~~~~~~m~~~~~~m~~~n~~m~l~~i~~~m~~f~~e~~~~~  129 (203)
                      ..+|   .+-..+.....+..++..-|..+...++.   ...|..|++--++..
T Consensus       126 e~Ki~e~~~~~~~l~ar~~~akA~~~v~~~~~~~s~---~sa~~~fer~e~kie  176 (225)
T COG1842         126 EQKIAELRAKKEALKARKAAAKAQEKVNRSLGGGSS---SSAMAAFERMEEKIE  176 (225)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc---hhhHHHHHHHHHHHH
Confidence            4443   33444444555566666667777677666   445555555444433

>KOG3229 consensus Vacuolar sorting protein VPS24 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.80  E-value=3.3  Score=34.25  Aligned_cols=36  Identities=19%  Similarity=0.250  Sum_probs=17.8

Q ss_pred             HHHHHHhhhcCCCCCCCchHHHHHHHHHHHHHhcch
Q 028800          131 QAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLE  166 (203)
Q Consensus       131 ~~e~m~d~~~~~~~~~~~eeevd~ll~qv~~E~gi~  166 (203)
                      .+++|+.+.|+-...++.++|||.++.++..+-..+
T Consensus       144 vdet~esv~d~eemeEe~deEVdkIL~~it~~~~~~  179 (227)
T KOG3229|consen  144 VDETMESVEDSEEMEEEADEEVDKILTEITGEKAGE  179 (227)
T ss_pred             HHHHHhcccchhhHHHHHHHHHHHHHHHHhcccccc
Confidence            344444444444333445555666665555554443

>KOG2910 consensus Uncharacterized conserved protein predicted to be involved in protein sorting [General function prediction only]

Probab=87.88  E-value=14  Score=30.34  Aligned_cols=101  Identities=17%  Similarity=0.241  Sum_probs=69.7

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH-HHHHHHHHH--------HHHHHHHHHHHHHHHH
Q 028800           15 KFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIR-KRTEQMNYL--------RLASRLDAVVARLDTQ   85 (203)
Q Consensus        15 r~~~r~L~re~~kle~ee~k~~~~iK~a~kkg~~~~ari~Ak~lvr-~rk~~~~l~--------~~~aqL~~v~~~l~~a   85 (203)
                      +..+-+-||-|-.+-.+..++.+-.|+.-+.  .+.=|.+|+.+|| .||....|+        .+-.|-+.--..|+.+
T Consensus         8 ~~~Itd~DrAIL~lK~QRdkl~qyqkR~e~~--le~Er~~Ar~lird~rKdrAlllLKkKryQE~Ll~qt~~qL~nlEqm   85 (209)
T KOG2910|consen    8 KSRITDQDRAILSLKTQRDKLKQYQKRLEKQ--LEAERQLARDLIRDGRKDRALLLLKKKRYQEELLTQTDNQLINLEQM   85 (209)
T ss_pred             CCCcchHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455667777777777777777766655432  5566889999999 566554444        2223333334557888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 028800           86 AKMTTINKSMANIVKSLESSLATGNLQKMSETMD  119 (203)
Q Consensus        86 ~~~~~~~~~m~~~~~~m~~~n~~m~l~~i~~~m~  119 (203)
                      .+...++..-+.+..+++..|..  +.+++..|+
T Consensus        86 vsdiEft~vqk~V~~gLk~GN~~--lkkl~~~~~  117 (209)
T KOG2910|consen   86 VSDIEFTQVQKKVMEGLKQGNEA--LKKLQQEFD  117 (209)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhcC
Confidence            88888888888999999999988  666665443

>KOG3232 consensus Vacuolar assembly/sorting protein DID2 [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.52  E-value=14  Score=29.93  Aligned_cols=168  Identities=15%  Similarity=0.183  Sum_probs=70.1

Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH---HHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028800            5 EKLLNQIMDLKFTSKSLQRQARKCEKEEKAEKLKVKK---AIEKGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVAR   81 (203)
Q Consensus         5 ~~l~~~~~~lr~~~r~L~re~~kle~ee~k~~~~iK~---a~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aqL~~v~~~   81 (203)
                      ..|++..|--+.-.|+-.+=.+.-.-|..|++.-|++   -+.+=.-+.|--.-.+.|..=+-..|+-...+++++....
T Consensus         9 ~~lf~LkF~sk~L~r~a~kceKeEK~Ek~K~kkAi~kgN~dvArIyAeNAIRkkne~~n~LrlssRvDAVaaRvqTavtm   88 (203)
T KOG3232|consen    9 NHLFDLKFTSKQLQRQAKKCEKEEKAEKAKLKKAIQKGNMDVARIYAENAIRKKNEAVNYLRLSSRVDAVAARVQTAVTM   88 (203)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555555544444333333333344455555544   0111111111111222333333444555555666555544


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH--HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHH
Q 028800           82 LDTQAKMTTINKSMANIVKSL--ESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQV  159 (203)
Q Consensus        82 l~~a~~~~~~~~~m~~~~~~m--~~~n~~m~l~~i~~~m~~f~~e~~~~~i~~e~m~d~~~~~~~~~~~eeevd~ll~qv  159 (203)
                      -.-..+|..|+.+|..+-+.|  .++...  .+++.+...++.-+.   +..+.+|+++-.-....++.+.=...+-++.
T Consensus        89 r~Vt~sM~gVvK~md~alktmNLekis~~--MDkFE~qFedldvqt---~~me~~m~~st~l~tpq~~Vd~Lmq~vADea  163 (203)
T KOG3232|consen   89 RKVTKSMAGVVKSMDSALKTMNLEKISQL--MDKFEKQFEDLDVQT---EVMEKAMSGSTALSTPQGDVDSLMQQVADEA  163 (203)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCHHHHHHH--HHHHHHHhhhhhhHH---HHHHHhccCcccccCChhHHHHHHHHHHHHh
Confidence            444455666666666554443  233333  333444433333332   3334455554333333333333333333333


Q ss_pred             HHHhcchhhcCC-CCCCCC
Q 028800          160 ADDYGLEVSVGL-PQPAAH  177 (203)
Q Consensus       160 ~~E~gi~~~~~l-~~~p~~  177 (203)
                      =-|...++...+ |..|.+
T Consensus       164 GlElnq~lp~~~~~a~~~~  182 (203)
T KOG3232|consen  164 GLELNQELPQNVVPAISVK  182 (203)
T ss_pred             chhhhhcCCCCCCCCcCCC
Confidence            334444444433 555544

>COG1937 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=84.85  E-value=11  Score=27.12  Aligned_cols=78  Identities=12%  Similarity=0.224  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 028800           61 KRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMA  140 (203)
Q Consensus        61 ~rk~~~~l~~~~aqL~~v~~~l~~a~~~~~~~~~m~~~~~~m~~~n~~m~l~~i~~~m~~f~~e~~~~~i~~e~m~d~~~  140 (203)
                      +++..+|+-+...|+.+|..-|+.-.-...+...+..+-..++.+...                     ++++-+...+.
T Consensus         8 kkkl~~RlrRi~GQv~gI~rMlEe~~~C~dVl~QIaAVr~Al~~~~~~---------------------vl~~hl~~cv~   66 (89)
T COG1937           8 KKKLLNRLRRIEGQVRGIERMLEEDRDCIDVLQQIAAVRGALNGLMRE---------------------VLEEHLKECVK   66 (89)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHH
Confidence            567778888999999999888887777777776666666666665443                     45555555554


Q ss_pred             CCCCCCCchHHHHHHHHHH
Q 028800          141 GSTSLSTPEGEVNSLMQQV  159 (203)
Q Consensus       141 ~~~~~~~~eeevd~ll~qv  159 (203)
                      ....+...++.+++++.-+
T Consensus        67 ~a~~~~~~~~~i~el~~~~   85 (89)
T COG1937          67 RAVEDGDEEESIDELIKAL   85 (89)
T ss_pred             HHhhccchHhHHHHHHHHH
Confidence            4433333356666665543

>PF02583 Trns_repr_metal: Metal-sensitive transcriptional repressor; InterPro: IPR003735 This entry describes proteins of unknown function

Probab=82.60  E-value=14  Score=25.93  Aligned_cols=77  Identities=12%  Similarity=0.196  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 028800           61 KRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMA  140 (203)
Q Consensus        61 ~rk~~~~l~~~~aqL~~v~~~l~~a~~~~~~~~~m~~~~~~m~~~n~~m~l~~i~~~m~~f~~e~~~~~i~~e~m~d~~~  140 (203)
                      +++-..||.+...|+.+|..-++.-.....+...+..+-.+|..+...                     ++++.+...+.
T Consensus         4 k~~ll~RL~rIeGQv~gI~~Miee~~~C~dIl~Qi~Av~~Al~~~~~~---------------------vl~~hl~~c~~   62 (85)
T PF02583_consen    4 KKDLLNRLKRIEGQVRGIERMIEEDRDCEDILQQIAAVRSALDKVGKL---------------------VLEDHLEHCLV   62 (85)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTE-HHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHH
Confidence            455677888999999999888777777777777777776666666554                     56666777776


Q ss_pred             CCCCC-CCchHHHHHHHHH
Q 028800          141 GSTSL-STPEGEVNSLMQQ  158 (203)
Q Consensus       141 ~~~~~-~~~eeevd~ll~q  158 (203)
                      ....+ .+.++.+++++.-
T Consensus        63 ~~~~~~~~~~~~i~el~~~   81 (85)
T PF02583_consen   63 EAIQDEEDREEAIEELIKL   81 (85)
T ss_dssp             CHCCTCCCHHHHHHHHHHH
T ss_pred             hHhcCcccHHHHHHHHHHH
Confidence            65543 4556666666543

; PDB: 2HH7_A 3AAI_A 4ADZ_B.

>KOG2027 consensus Spindle pole body protein [Cytoskeleton]

Probab=81.91  E-value=40  Score=30.62  Aligned_cols=138  Identities=19%  Similarity=0.277  Sum_probs=95.8

Q ss_pred             HHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 028800           27 KCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMAN-IVKSLESS  105 (203)
Q Consensus        27 kle~ee~k~~~~iK~a~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aqL~~v~~~l~~a~~~~~~~~~m~~-~~~~m~~~  105 (203)
                      |=+-.-++++.+|-..++.|+.+.|++=+..+||-.+...-|.-+--=.+-+..|+.....+...-..++. ++.+|=+.
T Consensus        12 Kk~a~~kq~RrdIA~lL~sg~~~~A~~RvE~li~ee~~~~a~e~le~fCelll~R~~~i~~~~~cp~~l~EAVsSlifAA   91 (388)
T KOG2027|consen   12 KKEALAKQLRRDIADLLKSGQDERARIRVEHLIREENLLEAYEILELFCELLLARLSLIEKQKECPDDLKEAVSSLIFAA   91 (388)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhcccCCHHHHHHHHHHHHHh
Confidence            33556788899999999999999999999999998888887777666677777777777766666655555 45556666


Q ss_pred             HhcCCHHHHHHHHHHH----HHHHHHHHHHH--------HHHHhhhcCCCCCCCchHHHHHHHHHHHHHhcchhh
Q 028800          106 LATGNLQKMSETMDSF----EKQFVNMEVQA--------EFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVS  168 (203)
Q Consensus       106 n~~m~l~~i~~~m~~f----~~e~~~~~i~~--------e~m~d~~~~~~~~~~~eeevd~ll~qv~~E~gi~~~  168 (203)
                      -+.-++++|..+=+-|    .++|...-+-.        .+|..    .....-+.+-+..++.+|+.|+++...
T Consensus        92 ~R~~EvpEL~~i~~~f~~kYGk~f~~~a~~l~p~~~Vn~kiiek----Ls~~~P~~e~k~k~lkEIA~ey~v~~~  162 (388)
T KOG2027|consen   92 PRLSEVPELREIRDLFVKKYGKEFVKAAIELRPGNGVNRKIIEK----LSVEAPPKELKEKYLKEIAKEYNVNWE  162 (388)
T ss_pred             ccccccHHHHHHHHHHHHHHhHHHHHHHHhccccCCcCHHHHHH----hcCCCCcHHHHHHHHHHHHHHhCCCcc
Confidence            6666799987665554    44444433221        12222    111123455569999999999998553

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	203
3frt_A	218	Charged multivesicular BODY protein 3; ESCRT, ESCR	4e-29
2gd5_A	179	Charged multivesicular BODY protein 3; CHMP3, ESCR	2e-28
3eab_G	50	CHMP1B; spastin, MIT, ESCRT, alternative splicing,	3e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04

>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens} Length = 218

 Score =  107 bits (267), Expect = 4e-29
 Identities = 34/203 (16%), Positives = 77/203 (37%), Gaps = 5/203 (2%)

Query: 5   EKLLNQIMDLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTE 64
           E +    + ++   + + RQ R  ++EE+  K  VK A +KG  D   + A+  IR R  
Sbjct: 10  ELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKA 69

Query: 65  QMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQ 124
                   + +++V+  +  Q  +  +  S+    + +++  +   + ++  TM    K+
Sbjct: 70  VSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKE 129

Query: 125 FVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVP---- 180
            +   +  E +E            E E    + ++  +         P     A+P    
Sbjct: 130 MMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRILFEITAGALGKAPSKVTDALPEPEP 189

Query: 181 -TKQQEKVDEDDLSRRLAELKAR 202
                   DE++    L  +++R
Sbjct: 190 PGAMAASEDEEEEEEALEAMQSR 212

>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A Length = 179

 Score =  104 bits (259), Expect = 2e-28
 Identities = 28/168 (16%), Positives = 65/168 (38%)

Query: 5   EKLLNQIMDLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTE 64
           E +    + ++   + + RQ R  ++EE+  K  VK A +KG  D   + A+  IR R  
Sbjct: 10  ELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKA 69

Query: 65  QMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQ 124
                   + +++V+  +  Q  +  +  S+    + +++  +   + ++  TM    K+
Sbjct: 70  VSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKE 129

Query: 125 FVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLP 172
            +   +  E +E            E E    + ++  +         P
Sbjct: 130 MMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRILFEITAGALGKAP 177

>3eab_G CHMP1B; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens} Length = 50

 Score = 50.3 bits (120), Expect = 3e-09
 Identities = 19/50 (38%), Positives = 35/50 (70%), Gaps = 1/50 (2%)

Query: 151 EVNSLMQQVADDYGLEVSVGLPQPAAHAVPTKQQEKVDEDDLSRRLAELK 200
           +V+ L+Q++AD+ GL++++ LPQ    +V T      ++D+LS+RLA L+
Sbjct: 1   QVDMLLQEMADEAGLDLNMELPQGQTGSVGTSVA-SAEQDELSQRLARLR 49

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 3e-05
 Identities = 34/205 (16%), Positives = 62/205 (30%), Gaps = 60/205 (29%)

Query: 13  DLKFTSKSLQR---QARKCEKEEKAEKLKVKKAIEKGNMDGA-RIYAENSIRKRTEQMNY 68
                +  L        K +      KL     +EK   +    I    SI        Y
Sbjct: 384 SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP---SI--------Y 432

Query: 69  LRLASRLDAVVARLDTQAKMTTINKSMA---NIVKSLESSLATGN-------------LQ 112
           L L  +L+              +++S+    NI K+ +S                   L+
Sbjct: 433 LELKVKLE----------NEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLK 482

Query: 113 K--MSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVA--------DD 162
                E M  F   F++      F+E  +   ++     G + + +QQ+         +D
Sbjct: 483 NIEHPERMTLFRMVFLDF----RFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDND 538

Query: 163 YGLEVSVG-----LPQPAAHAVPTK 182
              E  V      LP+   + + +K
Sbjct: 539 PKYERLVNAILDFLPKIEENLICSK 563

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.8 bits (92), Expect = 4e-04
 Identities = 16/96 (16%), Positives = 34/96 (35%), Gaps = 23/96 (23%)

Query: 58  SIRKRTEQM-NYLR--LASR--------LDAV-----VARLDTQAK--MTTINKSMANIV 99
           +I+ R   +   LR  L S+        L  V         +   K  +TT  K + + +
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFL 281

Query: 100 KSLESSLATGNLQKMS----ETMDSFEKQFVNMEVQ 131
            +  ++  + +   M+    E      K +++   Q
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLK-YLDCRPQ 316

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	203
3frt_A	218	Charged multivesicular BODY protein 3; ESCRT, ESCR	100.0
2gd5_A	179	Charged multivesicular BODY protein 3; CHMP3, ESCR	100.0
3eab_G	50	CHMP1B; spastin, MIT, ESCRT, alternative splicing,	99.07
3frt_A	218	Charged multivesicular BODY protein 3; ESCRT, ESCR	97.9
3um3_B	104	Charged multivesicular BODY protein 4B; alpha-heli	97.81
2gd5_A	179	Charged multivesicular BODY protein 3; CHMP3, ESCR	97.18
4abm_A	79	Charged multivesicular BODY protein 4B; cell cycle	97.16
3frr_A	191	Uncharacterized protein KIAA0174; ESCRT, ESCRT-III	97.07
3ggy_A	193	Increased sodium tolerance protein 1; ESCRT-III li	96.77
2v6x_B	54	DOA4-independent degradation protein 4; protein tr	96.42
3ggz_E	29	Vacuolar protein-sorting-associated protein 46; no	95.71
2xze_Q	40	Charged multivesicular BODY protein 3; hydrolase-p	88.77
2luh_B	59	Vacuolar protein-sorting-associated protein 60; VT	86.7
2hh7_A	119	Hypothetical protein CSOR; 4-helix bundle, unknown	86.16

>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}

Probab=100.00  E-value=2.5e-49  Score=325.98  Aligned_cols=195  Identities=17%  Similarity=0.266  Sum_probs=138.4

Q ss_pred             hHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028800            4 TEKLLNQIMDLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLD   83 (203)
Q Consensus         4 ~~~l~~~~~~lr~~~r~L~re~~kle~ee~k~~~~iK~a~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aqL~~v~~~l~   83 (203)
                      +..+++|.+.||++.|+|+|++++|+++|++++.+||+++++||+++|||||+++||+|+++.+||++++||++|+++|+
T Consensus         9 ~e~~r~~~r~Lr~~~R~LdR~~~kle~eEkk~~~~IKkaakkg~~~~arilAkelVR~Rk~~~rl~~~kaqL~sV~~rlq   88 (218)
T 3frt_A            9 KELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMK   88 (218)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHHHHh
Q 028800           84 TQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDY  163 (203)
Q Consensus        84 ~a~~~~~~~~~m~~~~~~m~~~n~~m~l~~i~~~m~~f~~e~~~~~i~~e~m~d~~~~~~~~~~~eeevd~ll~qv~~E~  163 (203)
                      +++++.+|+++|++++++|+.+|++||+|+|+.+|++|++||+++|++++||+|+|++.++.+++++|+|++|++|++|+
T Consensus        89 t~~s~~~v~~sM~~st~~M~~~n~~m~l~~i~~tM~efekE~~k~~i~eEmm~Da~d~~~~~~~~eee~d~~v~kVldEi  168 (218)
T 3frt_A           89 NQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRILFEI  168 (218)
T ss_dssp             HHHHCC----CCCCCHHHHHHHHHSTTSHHHHHHHHHHHHHHHHHSCC----------------CTTSTTTHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccccCCchHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999998888889999999999999999


Q ss_pred             cchhhcCCCCCCCC---CCCcc-----ccc-------CCcHHHHHHHHHHHhc
Q 028800          164 GLEVSVGLPQPAAH---AVPTK-----QQE-------KVDEDDLSRRLAELKA  201 (203)
Q Consensus       164 gi~~~~~l~~~p~~---~~~~~-----~~~-------~~~~ddl~~RL~~Lr~  201 (203)
                      |.   ++|+.+|++   +.|.+     ++.       ++..+++.+||++||+
T Consensus       169 ~~---~~l~~~p~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~m~~rl~al~s  218 (218)
T 3frt_A          169 TA---GALGKAPSKVTDALPEPEPPGAMAASEDEEEEEEALEAMQSRLATLRS  218 (218)
T ss_dssp             -----------------------------------------------------
T ss_pred             hH---hHhhcCCCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcC
Confidence            94   556666643   12211     011       1224578999999995

>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A

Probab=100.00  E-value=2.2e-42  Score=278.05  Aligned_cols=170  Identities=16%  Similarity=0.245  Sum_probs=139.3

Q ss_pred             hHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028800            4 TEKLLNQIMDLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLD   83 (203)
Q Consensus         4 ~~~l~~~~~~lr~~~r~L~re~~kle~ee~k~~~~iK~a~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aqL~~v~~~l~   83 (203)
                      +..|++|.+.||+++|+|+|++++|++++++++.+||+++++||.++||+||+++||+|++..+|+.++++|++|+++|+
T Consensus         9 ~e~lr~~~~~L~~~~r~Ldr~~~kle~~ekk~~~~Ikka~k~g~~~~aki~Ak~lvr~rk~~~~l~~~~a~l~~v~~~lq   88 (179)
T 2gd5_A            9 KELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMK   88 (179)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHHHHh
Q 028800           84 TQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDY  163 (203)
Q Consensus        84 ~a~~~~~~~~~m~~~~~~m~~~n~~m~l~~i~~~m~~f~~e~~~~~i~~e~m~d~~~~~~~~~~~eeevd~ll~qv~~E~  163 (203)
                      ++.++..++++|++++++|+.+|+.||+|+|+.+|++|+++++++|+++++|+|+|+++++++++++++|+++++|++|+
T Consensus        89 t~~~~~~v~~am~~~~~~M~~~n~~m~l~~i~~~M~e~~~e~~~~~~~~E~m~d~~~~~~~~~~~eee~d~~v~kVl~E~  168 (179)
T 2gd5_A           89 NQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRILFEI  168 (179)
T ss_dssp             HHHHHHHHTSSCCCCSHHHHTTTSSTTSSSCCHHHHHHHHHHHHHTSCC-------------------CTTHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999998888889999999999999999


Q ss_pred             cchhhcCCCCCCC
Q 028800          164 GLEVSVGLPQPAA  176 (203)
Q Consensus       164 gi~~~~~l~~~p~  176 (203)
                      |+   .+||.+|+
T Consensus       169 ~~---~~l~~~P~  178 (179)
T 2gd5_A          169 TA---GALGKAPS  178 (179)
T ss_dssp             -------------
T ss_pred             hH---hhcccCCC
Confidence            95   47877765

>3eab_G CHMP1B; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}

Probab=99.07  E-value=4.2e-12  Score=80.79  Aligned_cols=50  Identities=38%  Similarity=0.643  Sum_probs=31.4

Q ss_pred             HHHHHHHHHHHHhcchhhcCCCCCCCCCCCcccccCCcHHHHHHHHHHHhc
Q 028800          151 EVNSLMQQVADDYGLEVSVGLPQPAAHAVPTKQQEKVDEDDLSRRLAELKA  201 (203)
Q Consensus       151 evd~ll~qv~~E~gi~~~~~l~~~p~~~~~~~~~~~~~~ddl~~RL~~Lr~  201 (203)
                      +||++|+||++|+|++++.+|+.+|.++++.+ +...++|+|.+||++||+
T Consensus         1 qVd~Lm~qVaDE~Glel~~~L~~~~~~~~~~~-~~~~~eD~L~~RLaaLR~   50 (50)
T 3eab_G            1 QVDMLLQEMADEAGLDLNMELPQGQTGSVGTS-VASAEQDELSQRLARLRD   50 (50)
T ss_dssp             CCCHHHHHHHHHTTCC---------CHHHHHH-HHHHHHHHHHHHHHTTC-
T ss_pred             CHHHHHHHHHHHhCchHHhhcccccccccCCC-CCcccHHHHHHHHHHHhC
Confidence            47899999999999999999999876543222 223469999999999995

>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}

Probab=97.90  E-value=8.2e-06  Score=66.78  Aligned_cols=150  Identities=13%  Similarity=0.123  Sum_probs=64.9

Q ss_pred             hHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH-----HHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028800            4 TEKLLNQIMDLKFTSKSLQRQARKCEKEEKAEKLK-----VKKAIEKGNMDGARIYAENSIRKRTEQMNYLRLASRLDAV   78 (203)
Q Consensus         4 ~~~l~~~~~~lr~~~r~L~re~~kle~ee~k~~~~-----iK~a~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aqL~~v   78 (203)
                      +..|....++|-+.++.|+++-+++..+-++.-++     +|-.++  +.-..|-+...+.+.+   .++.....+|...
T Consensus        16 ~r~Lr~~~R~LdR~~~kle~eEkk~~~~IKkaakkg~~~~arilAk--elVR~Rk~~~rl~~~k---aqL~sV~~rlqt~   90 (218)
T 3frt_A           16 SLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAK--EMIRSRKAVSKLYASK---AHMNSVLMGMKNQ   90 (218)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH--HHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH--HHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence            34466666666666666666666665555443222     111111  1222232333333333   4445555666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH--HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCchHHHHHHH
Q 028800           79 VARLDTQAKMTTINKSMANIVKSL--ESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLM  156 (203)
Q Consensus        79 ~~~l~~a~~~~~~~~~m~~~~~~m--~~~n~~m~l~~i~~~m~~f~~e~~~~~i~~e~m~d~~~~~~~~~~~eeevd~ll  156 (203)
                      ......+.++..++.+|+.+...|  ..+...  ..++++-+.++   -..-++.+++|+++++....+++.+++|+.++
T Consensus        91 ~s~~~v~~sM~~st~~M~~~n~~m~l~~i~~t--M~efekE~~k~---~i~eEmm~Da~d~~~~~~~~eee~d~~v~kVl  165 (218)
T 3frt_A           91 LAVLRVAGSLQKSTEVMKAMQSLVKIPEIQAT--MRELSKEMMKA---GIIEEMLEDTFESMDDQEEMEEEAEMEIDRIL  165 (218)
T ss_dssp             HHCC----CCCCCHHHHHHHHHSTTSHHHHHH--HHHHHHHHHHH---SCC----------------CTTSTTTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH--HHHHHHHHHHh---hhHHHHHHHHHhcccccCCchHHHHHHHHHHH
Confidence            655555566666666666666665  455444  44444433332   12223566666666655444556666777777


Q ss_pred             HHHHHHh
Q 028800          157 QQVADDY  163 (203)
Q Consensus       157 ~qv~~E~  163 (203)
                      +++....
T Consensus       166 dEi~~~~  172 (218)
T 3frt_A          166 FEITAGA  172 (218)
T ss_dssp             HTC----
T ss_pred             HHHhHhH
Confidence            7666543

>3um3_B Charged multivesicular BODY protein 4B; alpha-helix of C-terminal tail of CHMP4B, ESCRT-III, CHMPS, protein-transport protein complex, BROX; 3.80A {Homo sapiens}

Probab=97.81  E-value=0.00011  Score=53.22  Aligned_cols=71  Identities=20%  Similarity=0.240  Sum_probs=49.5

Q ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHHHHh----cchh----hcCCCCCCCCCC
Q 028800          108 TGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDY----GLEV----SVGLPQPAAHAV  179 (203)
Q Consensus       108 ~m~l~~i~~~m~~f~~e~~~~~i~~e~m~d~~~~~~~~~~~eeevd~ll~qv~~E~----gi~~----~~~l~~~p~~~~  179 (203)
                      .|++++|..+|+++..+++..+-++++++..++.  +...+++|++..+..+..+.    -+++    ...||.+|+.+.
T Consensus         2 ~m~idkVe~lmDei~E~~e~~~EI~e~Ls~~~~~--~~~~DEdELe~ELe~Le~e~l~~~~l~~~~~~~~~LP~vP~~~l   79 (104)
T 3um3_B            2 NMDIDKVDELMQDIADQQELAEEISTAISKPVGF--GEEFDEDELMAELEELEQEELDKNLLEISGPETVPLPNVPSIAL   79 (104)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC--CCCCCHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCcC
Confidence            5899999999999999999999999998886532  12234556666555555442    2222    235888887765


Q ss_pred             C
Q 028800          180 P  180 (203)
Q Consensus       180 ~  180 (203)
                      |
T Consensus        80 p   80 (104)
T 3um3_B           80 P   80 (104)
T ss_pred             C
Confidence            4

>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A

Probab=97.18  E-value=0.00027  Score=55.91  Aligned_cols=148  Identities=12%  Similarity=0.119  Sum_probs=79.3

Q ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028800           13 DLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRK-RTEQMNYLRLASRLDAVVARLDTQAKMTTI   91 (203)
Q Consensus        13 ~lr~~~r~L~re~~kle~ee~k~~~~iK~a~kkg~~~~ari~Ak~lvr~-rk~~~~l~~~~aqL~~v~~~l~~a~~~~~~   91 (203)
                      .||...+.|.+.++.|+++..++..+-|+....= ..+++--..+.+|. =++..+.-+...+|....++|+......+.
T Consensus        11 ~lr~~~~~L~~~~r~Ldr~~~kle~~ekk~~~~I-kka~k~g~~~~aki~Ak~lvr~rk~~~~l~~~~a~l~~v~~~lqt   89 (179)
T 2gd5_A           11 LVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSV-KDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKN   89 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4688889999999999999988887776543321 22222222233331 223334445677777888888888887777


Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHH--HHHHHHHHHHH---HHHHHHHhhhcCCCCCCCchHHHHHHHHHHHHHh
Q 028800           92 NKSMANIVKSLESSLATGNLQKMSETM--DSFEKQFVNME---VQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDY  163 (203)
Q Consensus        92 ~~~m~~~~~~m~~~n~~m~l~~i~~~m--~~f~~e~~~~~---i~~e~m~d~~~~~~~~~~~eeevd~ll~qv~~E~  163 (203)
                      ..++..++.+|+.+.+.  +..+...|  ++++.-|.++.   ..-++++++|++++++..++++.++.++.+.+.+
T Consensus        90 ~~~~~~v~~am~~~~~~--M~~~n~~m~l~~i~~~M~e~~~e~~~~~~~~E~m~d~~~~~~~~~~~eee~d~~v~kV  164 (179)
T 2gd5_A           90 QLAVLRVAGSLQKSTEV--MKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRI  164 (179)
T ss_dssp             HHHHHHHTSSCCCCSHH--HHTTTSSTTSSSCCHHHHHHHHHHHHHTSCC-------------------CTTHHHHT
T ss_pred             HHHHHHHHHHHHHHHHH--HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcHHHHHHHHHHH
Confidence            77777777777776665  34444444  55555555554   4444447788888766544555555555554443

>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}

Probab=97.16  E-value=0.011  Score=40.48  Aligned_cols=74  Identities=16%  Similarity=0.149  Sum_probs=59.9

Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 028800            6 KLLNQIMDLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRT-EQMNYLRLASRLDAVVARLDT   84 (203)
Q Consensus         6 ~l~~~~~~lr~~~r~L~re~~kle~ee~k~~~~iK~a~kkg~~~~ari~Ak~lvr~rk-~~~~l~~~~aqL~~v~~~l~~   84 (203)
                      +..+++.+||.+...|++...+|+..-......+|+++ .+|..    -|..+.|.+| +...+.++.++++++..++.+
T Consensus         3 ~~~~AI~~Lr~~~d~L~kkq~~L~~~i~~e~~~Ak~~~-~knK~----~Al~aLkrKK~~E~qL~q~~~ql~~LE~q~~~   77 (79)
T 4abm_A            3 MEQEAIQRLRDTEEMLSKKQEFLEKKIEQELTAAKKHG-TKNKR----AALQALKRKKRYEKQLAQIDGTLSTIEFQREA   77 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TSCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCHH----HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Confidence            57889999999999999999999999999999999999 55543    4666677555 455566888888888877654

>3frr_A Uncharacterized protein KIAA0174; ESCRT, ESCRT-III, CHMP, IST1, alternative splicing, phosphoprotein, protein binding; 1.80A {Homo sapiens} PDB: 3frs_A

Probab=97.07  E-value=0.053  Score=43.21  Aligned_cols=158  Identities=14%  Similarity=0.201  Sum_probs=110.3

Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028800            7 LLNQIMDLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQA   86 (203)
Q Consensus         7 l~~~~~~lr~~~r~L~re~~kle~ee~k~~~~iK~a~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aqL~~v~~~l~~a~   86 (203)
                      -...+..||..+..|.=-.+|-....+..+.+|-+.++.|..+.||+-+.++||-.....-|.-+---.+-+..++....
T Consensus        10 ~~K~K~~Lklai~Rl~ll~~Kk~~~~k~~RrdIA~LL~~gk~~~AriRvE~iI~ed~~ie~~EilElyCelL~~R~~li~   89 (191)
T 3frr_A           10 AERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHIIREDYLVEAMEILELYCDLLLARFGLIQ   89 (191)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44667889999999988888889999999999999999999999999999999999888877766666666666655554


Q ss_pred             HHHHHHHHHHH-HHHHHHHHHhc-CCHHHHHHHHHH----HHHHHHHHHH------HHHHHHhhhcCCCCCCCchHHHHH
Q 028800           87 KMTTINKSMAN-IVKSLESSLAT-GNLQKMSETMDS----FEKQFVNMEV------QAEFMESAMAGSTSLSTPEGEVNS  154 (203)
Q Consensus        87 ~~~~~~~~m~~-~~~~m~~~n~~-m~l~~i~~~m~~----f~~e~~~~~i------~~e~m~d~~~~~~~~~~~eeevd~  154 (203)
                      .+...-..+.. ++.++-...+. -++|++..+=.-    |.++|...-+      ....+-.-++   ...-+.+-++.
T Consensus        90 ~~k~cp~~l~EAvsslIyAa~R~~~elpEL~~ir~~l~~KyGkeF~~~a~e~~~~~Vn~~iv~kLs---~~~P~~~lv~~  166 (191)
T 3frr_A           90 SMKELDSGLAESVSTLIWAAPRLQSEVAELKIVADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLS---VEAPPKILVER  166 (191)
T ss_dssp             SCSSCCGGGHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCHHHHHHHHTTTTSCSCHHHHHHTC---CSCCCHHHHHH
T ss_pred             ccCCCCHHHHHHHHHHHHhhhcccccChHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCHHHHHHcC---CCCcCHHHHHH
Confidence            43333334444 34445555554 789998666554    4444443311      1111111111   12355788999


Q ss_pred             HHHHHHHHhcchh
Q 028800          155 LMQQVADDYGLEV  167 (203)
Q Consensus       155 ll~qv~~E~gi~~  167 (203)
                      .+.+|+.++|++-
T Consensus       167 yL~EIA~~y~V~w  179 (191)
T 3frr_A          167 YLIEIAKNYNVPY  179 (191)
T ss_dssp             HHHHHHHHHTCCC
T ss_pred             HHHHHHHHcCCCC
Confidence            9999999999764

>3ggy_A Increased sodium tolerance protein 1; ESCRT-III like, phosphoprotein, protein transport, endocytosis; 1.70A {Saccharomyces cerevisiae} PDB: 3ggz_A

Probab=96.77  E-value=0.12  Score=41.29  Aligned_cols=158  Identities=16%  Similarity=0.183  Sum_probs=109.7

Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028800            7 LLNQIMDLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQA   86 (203)
Q Consensus         7 l~~~~~~lr~~~r~L~re~~kle~ee~k~~~~iK~a~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aqL~~v~~~l~~a~   86 (203)
                      ....+..||..+..|.=-.+|-....+..+.+|-+.++.|..+.||+-+.++||-.....-|.-+---.+-+..++....
T Consensus         9 ~~KlK~~Lklai~Rl~llq~Kk~~~~k~~RrdIA~LL~~gk~~~AriRvE~iI~ed~~ie~~EilElyCelL~aR~~ll~   88 (193)
T 3ggy_A            9 TIKLKTCLKMCIQRLRYAQEKQQAIAKQSRRQVAQLLLTNKEQKAHYRVETLIHDDIHIELLEILELYCELLLARVQVIN   88 (193)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34677889999999999999999999999999999999999999999999999998888877665555555555554433


Q ss_pred             H--------HHHHHHHHHH-HHHHHHHHHhcCCHHHHHHHHHH----HHHHHHHH------HHHHHHHHhhhcCCCCCCC
Q 028800           87 K--------MTTINKSMAN-IVKSLESSLATGNLQKMSETMDS----FEKQFVNM------EVQAEFMESAMAGSTSLST  147 (203)
Q Consensus        87 ~--------~~~~~~~m~~-~~~~m~~~n~~m~l~~i~~~m~~----f~~e~~~~------~i~~e~m~d~~~~~~~~~~  147 (203)
                      .        ....-..+.. ++.++-......++|++..+=.-    |.++|...      |+...++.- ++.   ..-
T Consensus        89 ~~~~e~~~~~k~cp~~l~EAvsslIyAa~R~~elpEL~~ir~~l~~KyGkeF~~~a~en~~gVn~kiv~k-Ls~---~~P  164 (193)
T 3ggy_A           89 DISTEEQLVKEHMDDGINEAIRSLIYAILFVDEVKELSQLKDLMAWKINVEFVNGVIADHIDVPEKIIKK-CSP---SVP  164 (193)
T ss_dssp             TCCSHHHHHHHSSSSSHHHHHHHHHHHGGGCTTCTTHHHHHHHHHHHTCHHHHHHHHHHCTTCCHHHHHH-HSC---CCC
T ss_pred             hhcccccccccCCCHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhCHHHHHHHHhcCCCCCHHHHHH-cCC---CCc
Confidence            3        2223333444 44445555555789988655444    45555432      222222222 222   134


Q ss_pred             chHHHHHHHHHHHHHhcchhh
Q 028800          148 PEGEVNSLMQQVADDYGLEVS  168 (203)
Q Consensus       148 ~eeevd~ll~qv~~E~gi~~~  168 (203)
                      +.+-++..+.+|+.++|++.+
T Consensus       165 ~~elv~~yL~EIA~ey~V~w~  185 (193)
T 3ggy_A          165 KEELVDLYLKEIAKTYDVPYS  185 (193)
T ss_dssp             CHHHHHHHHHHHHHHTTCCHH
T ss_pred             CHHHHHHHHHHHHHHcCCCCC
Confidence            578899999999999998654

>2v6x_B DOA4-independent degradation protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}

Probab=96.42  E-value=0.00079  Score=43.00  Aligned_cols=14  Identities=50%  Similarity=0.717  Sum_probs=13.2

Q ss_pred             cHHHHHHHHHHHhc
Q 028800          188 DEDDLSRRLAELKA  201 (203)
Q Consensus       188 ~~ddl~~RL~~Lr~  201 (203)
                      .+|||++||++||+
T Consensus        39 ~ddDLQARLdsLRR   52 (54)
T 2v6x_B           39 PDDDLQARLNTLKK   52 (54)
T ss_dssp             CCHHHHHHHHHHHC
T ss_pred             chHHHHHHHHHhcc
Confidence            69999999999997

>3ggz_E Vacuolar protein-sorting-associated protein 46; novel MIM binding mode, phosphoprotein, coiled coil, endosome, membrane; 3.80A {Saccharomyces cerevisiae}

Probab=95.71  E-value=0.008  Score=33.05  Aligned_cols=17  Identities=35%  Similarity=0.599  Sum_probs=14.8

Q ss_pred             ccCCcHHHHHHHHHHHh
Q 028800          184 QEKVDEDDLSRRLAELK  200 (203)
Q Consensus       184 ~~~~~~ddl~~RL~~Lr  200 (203)
                      ++++.||.|.+||++||
T Consensus        12 ~~eekEDkLAqRLRALR   28 (29)
T 3ggz_E           12 VDDEKEDKLAQRLRALR   28 (29)
T ss_pred             ccchhhHHHHHHHHHHc
Confidence            44577999999999999

>2xze_Q Charged multivesicular BODY protein 3; hydrolase-protein transport complex; 1.75A {Homo sapiens}

Probab=88.77  E-value=0.1  Score=30.95  Aligned_cols=12  Identities=33%  Similarity=0.667  Sum_probs=10.2

Q ss_pred             HHHHHHHHHHhc
Q 028800          190 DDLSRRLAELKA  201 (203)
Q Consensus       190 ddl~~RL~~Lr~  201 (203)
                      ..|+.||++||+
T Consensus        29 ~~MqsRLaALRS   40 (40)
T 2xze_Q           29 EAMQSRLATLRS   40 (40)
T ss_dssp             HHHHHHHHHHTC
T ss_pred             HHHHHHHHHhcC
Confidence            458999999996

>2luh_B Vacuolar protein-sorting-associated protein 60; VTA1, VPS60, ESCRT, MVB, novel MIT recognition mode, protein transport, endocytosis; NMR {Saccharomyces cerevisiae}

Probab=86.70  E-value=0.49  Score=30.34  Aligned_cols=54  Identities=11%  Similarity=0.161  Sum_probs=43.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHHHH
Q 028800          109 GNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADD  162 (203)
Q Consensus       109 m~l~~i~~~m~~f~~e~~~~~i~~e~m~d~~~~~~~~~~~eeevd~ll~qv~~E  162 (203)
                      +|+.+|....+++.-.++..+.+++.++.+.+-...++.++++.+..++-+.+|
T Consensus         1 inIDkIedlqDem~Dl~e~~nEIQE~L~rsy~~pe~DdiDE~eL~aELdaL~de   54 (59)
T 2luh_B            1 INIDKLQDMQDEMLDLIEQGDELQEVLAMNNNSGELDDISDAELDAELDALAQE   54 (59)
T ss_dssp             CHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHTTCCGGGTTHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccCCHHHHHHHHHHhhcc
Confidence            567888888889999999999999999988766543446688888888777665

>2hh7_A Hypothetical protein CSOR; 4-helix bundle, unknown function; 2.55A {Mycobacterium tuberculosis}

Probab=86.16  E-value=3.9  Score=29.85  Aligned_cols=63  Identities=19%  Similarity=0.278  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 028800           61 KRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMA  140 (203)
Q Consensus        61 ~rk~~~~l~~~~aqL~~v~~~l~~a~~~~~~~~~m~~~~~~m~~~n~~m~l~~i~~~m~~f~~e~~~~~i~~e~m~d~~~  140 (203)
                      +++...||-+...|+.+|..-|+.-.....+...+..+..+++.++..                     ++++-+...+.
T Consensus         9 kk~ll~RLkRIeGQvrGI~rMIEedr~C~DIL~QlaAVrsAL~~~~~~---------------------ILe~HL~~Cv~   67 (119)
T 2hh7_A            9 KRAALNRLKTVRGHLDGIVRMLESDAYCVDVMKQISAVQSSLERANRV---------------------MLHNHLETCFS   67 (119)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHTTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHH
Confidence            456778888999999999998888777777777777777777766544                     56667777776


Q ss_pred             CCCC
Q 028800          141 GSTS  144 (203)
Q Consensus       141 ~~~~  144 (203)
                      ....
T Consensus        68 ~a~~   71 (119)
T 2hh7_A           68 TAVL   71 (119)
T ss_dssp             TCSS
T ss_pred             hHhc
Confidence            6543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00