Citrus Sinensis ID: 028810

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200---
Protein Sequence
MASASAETASSSSEIATAAASPTTERRGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQRRIRQAAAAAANES
Secondary Structure (PSIPRED)
ccccccccccccHHHHHccccccccccccccccccccHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccccEEEEEEcccccEEEEEEccccEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccHHHccccHHcccccccccccccccccccHHHcHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccccEEEEEEEcccEEEEEEcccccEEEEEEcccHEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEHHHHHEEcHcHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
masasaetasssseiataaasptterrgipaaqFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKeggealtadfevsegifsrariedtdSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQRRIRQAAAAAANES
Flexible Loop (DISEMBL)
masasaetasssseiataaasptterrgIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKeggealtadfevsEGIFsrariedtdSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQRRIRQAAAAAANES
Low Complexity Region (SEG)
MasasaetasssseiataaasptteRRGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQRRIRQaaaaaaNES
Disordered region (IsUnstruct)
******************************AAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQRRI***********
Disordered Region (DISOPRED)
********************************QFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVE**************PDIEKCLDIVA**************DFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWD*****************
Disordered Region (DISEMBL)
*************************RRGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQRR************
Disordered Region (DISPRO)
****************************IPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQRRIRQ*********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MASASAETASSSSEIATAAASPTTERRGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATVLLQKNxxxxxxxxxxxxxxxxxxxxxVTITQVTVARVYNWDVHQRRIRQAAAAAANES
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	203	2.2.26 [Sep-21-2011]
P57741	195	Probable prefoldin subuni	yes	no	0.866	0.902	0.818	1e-82
P61759	196	Prefoldin subunit 3 OS=Mu	yes	no	0.896	0.928	0.442	1e-39
Q5RCG9	197	Prefoldin subunit 3 OS=Po	yes	no	0.896	0.923	0.434	2e-39
P61758	197	Prefoldin subunit 3 OS=Ho	yes	no	0.896	0.923	0.429	6e-39
Q2TBX2	197	Prefoldin subunit 3 OS=Bo	yes	no	0.896	0.923	0.440	1e-37
O18054	185	Probable prefoldin subuni	yes	no	0.842	0.924	0.36	5e-30
Q9VGP6	185	Probable prefoldin subuni	yes	no	0.793	0.870	0.406	8e-29
Q54LS2	195	Probable prefoldin subuni	yes	no	0.788	0.820	0.402	1e-28
P48363	199	Prefoldin subunit 3 OS=Sa	yes	no	0.857	0.874	0.356	5e-27
Q10143	169	Probable prefoldin subuni	yes	no	0.778	0.934	0.397	4e-26

>sp|P57741|PFD3_ARATH Probable prefoldin subunit 3 OS=Arabidopsis thaliana GN=At5g49510 PE=2 SV=1

 Score =  305 bits (781), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 144/176 (81%), Positives = 162/176 (92%)

Query: 24  TERRGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPD 83
           TERRGIPAA+F++DV+T+LSQ  LD NSALAF QERLQQYK+VEMKLLAQQRDLQAKIPD
Sbjct: 14  TERRGIPAAKFIQDVETYLSQSGLDPNSALAFHQERLQQYKVVEMKLLAQQRDLQAKIPD 73

Query: 84  IEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEA 143
           IEKCL++VATL+AKK  GEAL ADFEVSEGI+SRA IEDTDSVCLWLGANVMLEYSC+EA
Sbjct: 74  IEKCLEVVATLEAKKGTGEALLADFEVSEGIYSRACIEDTDSVCLWLGANVMLEYSCEEA 133

Query: 144 TVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQRRIRQAAAAA 199
           + LL+ NLENAKASLEVL+ADLQFLRDQVT+TQVT+ARVYNWDVHQRR++Q    A
Sbjct: 134 SALLKNNLENAKASLEVLVADLQFLRDQVTVTQVTIARVYNWDVHQRRVKQVTPTA 189

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.
Arabidopsis thaliana (taxid: 3702)

>sp|P61759|PFD3_MOUSE Prefoldin subunit 3 OS=Mus musculus GN=Vbp1 PE=2 SV=2

 Score =  162 bits (410), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 81/183 (44%), Positives = 117/183 (63%), Gaps = 1/183 (0%)

Query: 9   ASSSSEIATAAASPTTERRGIPAAQFVEDVQTFLSQLDLDV-NSALAFLQERLQQYKLVE 67
           A     + TAA +      GIP A FVEDV +F+ Q   +  ++ L  L E+ Q+YK +E
Sbjct: 4   AKDGCGLETAAGNGRRLHLGIPEAVFVEDVDSFMKQPGNETADTVLKKLDEQYQKYKFME 63

Query: 68  MKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVC 127
           + L  ++R L+ +IP+I++ L+I+  +Q KKE   ++   F +++ ++ +A +  TD VC
Sbjct: 64  LNLAQKKRRLKGQIPEIKQTLEILKYMQKKKESTNSMETRFLLADNLYCKASVPPTDKVC 123

Query: 128 LWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDV 187
           LWLGANVMLEY  DEA  LL+KNL  A  +L+ L  DL FLRDQ T T+V +ARVYNWDV
Sbjct: 124 LWLGANVMLEYDIDEAQALLEKNLSTATKNLDSLEEDLDFLRDQFTTTEVNMARVYNWDV 183

Query: 188 HQR 190
            +R
Sbjct: 184 KRR 186

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.

Mus musculus (taxid: 10090)

>sp|Q5RCG9|PFD3_PONAB Prefoldin subunit 3 OS=Pongo abelii GN=VBP1 PE=2 SV=1

 Score =  161 bits (408), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 83/191 (43%), Positives = 121/191 (63%), Gaps = 9/191 (4%)

Query: 4   ASAETASSSSEIATAAASPTTERR---GIPAAQFVEDVQTFLSQLDLDV-NSALAFLQER 59
           A+ + +    E+AT        RR   GIP A FVEDV +F+ Q   +  ++ L  L E+
Sbjct: 2   AAVKDSCGKGEMATGNG-----RRLHLGIPEAVFVEDVDSFMKQPGNETADTVLKKLDEQ 56

Query: 60  LQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRAR 119
            Q+YK +E+ L  ++R L+ +IP+I++ L+I+  +Q KKE   ++   F +++ ++ +A 
Sbjct: 57  YQKYKFMELNLAQKKRRLKGQIPEIKQTLEILKYMQKKKESTNSMETRFLLADNLYCKAS 116

Query: 120 IEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTV 179
           +  TD VCLWLGANVMLEY  DEA  LL+KNL  A  +L+ L  DL FLRDQ T T+V +
Sbjct: 117 VPPTDKVCLWLGANVMLEYDIDEAQALLEKNLSTATKNLDSLEEDLDFLRDQFTTTEVNM 176

Query: 180 ARVYNWDVHQR 190
           ARVYNWDV +R
Sbjct: 177 ARVYNWDVKRR 187

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.

Pongo abelii (taxid: 9601)

>sp|P61758|PFD3_HUMAN Prefoldin subunit 3 OS=Homo sapiens GN=VBP1 PE=1 SV=3

 Score =  160 bits (404), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 82/191 (42%), Positives = 121/191 (63%), Gaps = 9/191 (4%)

Query: 4   ASAETASSSSEIATAAASPTTERR---GIPAAQFVEDVQTFLSQLDLDV-NSALAFLQER 59
           A+ + +    E+AT        RR   GIP A FVEDV +F+ Q   +  ++ L  L E+
Sbjct: 2   AAVKDSCGKGEMATGNG-----RRLHLGIPEAVFVEDVDSFMKQPGNETADTVLKKLDEQ 56

Query: 60  LQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRAR 119
            Q+YK +E+ L  ++R L+ +IP+I++ L+I+  +Q KKE   ++   F +++ ++ +A 
Sbjct: 57  YQKYKFMELNLAQKKRRLKGQIPEIKQTLEILKYMQKKKESTNSMETRFLLADNLYCKAS 116

Query: 120 IEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTV 179
           +  TD +CLWLGANVMLEY  DEA  LL+KNL  A  +L+ L  DL FLRDQ T T+V +
Sbjct: 117 VPPTDKMCLWLGANVMLEYDIDEAQALLEKNLSTATKNLDSLEEDLDFLRDQFTTTEVNM 176

Query: 180 ARVYNWDVHQR 190
           ARVYNWDV +R
Sbjct: 177 ARVYNWDVKRR 187

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.

Homo sapiens (taxid: 9606)

>sp|Q2TBX2|PFD3_BOVIN Prefoldin subunit 3 OS=Bos taurus GN=VBP1 PE=2 SV=1

 Score =  155 bits (393), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 82/186 (44%), Positives = 115/186 (61%), Gaps = 4/186 (2%)

Query: 9   ASSSSEIATAAASPTTERR---GIPAAQFVEDVQTFLSQLDLDV-NSALAFLQERLQQYK 64
           A+S         +    RR   GIP A FVEDV +F+ Q   +  +  L  L E+ Q+YK
Sbjct: 2   AASKDGCGVGEVAAGNGRRLHLGIPEAVFVEDVDSFMKQPGNETADIVLKKLDEQYQKYK 61

Query: 65  LVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTD 124
            +E+ L  ++R L+ +IP+I++ L+I+   Q KKE   +L   F +++ ++ +A +  TD
Sbjct: 62  FMELNLAQKKRRLKGQIPEIKQTLEILKYKQKKKESTSSLETRFLLADNLYCKASVPPTD 121

Query: 125 SVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYN 184
            VCLWLGANVMLEY  DEA  LL+KNL  A  +L+ L  DL FLRDQ T T+V +ARVYN
Sbjct: 122 KVCLWLGANVMLEYDIDEAQALLEKNLLTATKNLDSLEEDLDFLRDQFTTTEVNMARVYN 181

Query: 185 WDVHQR 190
           WDV +R
Sbjct: 182 WDVKRR 187

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.

Bos taurus (taxid: 9913)

>sp|O18054|PFD3_CAEEL Probable prefoldin subunit 3 OS=Caenorhabditis elegans GN=pfd-3 PE=3 SV=1

 Score =  130 bits (328), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 63/175 (36%), Positives = 110/175 (62%), Gaps = 4/175 (2%)

Query: 27  RGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEK 86
           RGIP ++ +EDV+++L++  L +  A   L+E+  +YK VE  +LAQ+  +  KIP+ E 
Sbjct: 11  RGIPKSELIEDVESWLTKEKLSIEEAEVVLREKYGKYKYVESSMLAQKVRMSEKIPEFEN 70

Query: 87  CLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATVL 146
            L I+ TL AK+   E+    F +S+ ++++A ++  + V +WLGANVM+EY  + A  L
Sbjct: 71  SLSIIDTLIAKRAADESFETTFLLSDDVYTKATVQKPEKVSIWLGANVMVEYDLENARKL 130

Query: 147 LQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQRRIRQAAAAAAN 201
           L KN  + +  ++ L  +L +++DQ+T T+V ++ + N+ V++RR    AA A N
Sbjct: 131 LDKNRGSVQKVVDELTNELSYIKDQITTTEVNMSHIVNFGVNKRR----AALAVN 181

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.

Caenorhabditis elegans (taxid: 6239)

>sp|Q9VGP6|PFD3_DROME Probable prefoldin subunit 3 OS=Drosophila melanogaster GN=CG6719 PE=3 SV=2

 Score =  126 bits (317), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 67/165 (40%), Positives = 106/165 (64%), Gaps = 4/165 (2%)

Query: 28  GIPAAQFVEDVQTFLSQL-DLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEK 86
           GIP A F+E++ TF+SQ  + +    L  L E+  +Y+ +   L A++R L+++IPD+E+
Sbjct: 13  GIPEAVFLEEIDTFMSQPENENCEKVLQRLDEQHGKYRFMACNLEARRRKLKSQIPDLER 72

Query: 87  CLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATVL 146
            L++V  L+ + E  E     F +S+ +F +  +  T +V LWLGA+VMLEY  DEA  L
Sbjct: 73  SLEMVNVLRKEDEERET---QFLLSDQVFIKTLVPPTKTVYLWLGASVMLEYPLDEAEAL 129

Query: 147 LQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQRR 191
           L +N+ +A  +L+ +  D  FLRDQ+T T+V +ARVYNW V +R+
Sbjct: 130 LNQNITSAVGNLKSVEHDQDFLRDQITTTEVNMARVYNWGVKKRQ 174

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.

Drosophila melanogaster (taxid: 7227)

>sp|Q54LS2|PFD3_DICDI Probable prefoldin subunit 3 OS=Dictyostelium discoideum GN=pfdn3 PE=3 SV=1

 Score =  126 bits (316), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 66/164 (40%), Positives = 99/164 (60%), Gaps = 4/164 (2%)

Query: 28  GIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKC 87
            IP   F+ +V+ F+   D DV +    LQE  Q+YK  E KL      L  +   +++ 
Sbjct: 23  NIPMVTFISNVEEFVK--DKDVENVFKQLQEAYQKYKFFESKLSNNISMLTQRSKQLQES 80

Query: 88  LDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATVLL 147
           LDIV  ++ K    E+ +  +E+SEG++S A++ +  S+ LWLGANVMLEYS +EA  +L
Sbjct: 81  LDIVDHVENK--SNESFSVQYELSEGVYSSAQVNEPKSIYLWLGANVMLEYSFEEAREVL 138

Query: 148 QKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQRR 191
           +KN +     L   I DL F++DQ+T T V V+RVYN+D+ Q+R
Sbjct: 139 RKNKDTVDRQLSESIQDLGFVKDQITTTDVNVSRVYNYDIIQKR 182

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.

Dictyostelium discoideum (taxid: 44689)

>sp|P48363|PFD3_YEAST Prefoldin subunit 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PAC10 PE=1 SV=1

 Score =  120 bits (302), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 66/185 (35%), Positives = 108/185 (58%), Gaps = 11/185 (5%)

Query: 27  RGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEK 86
           RGIP A F+E+V   +     D        QERL +YK ++   LA  + L+ +IPD+E 
Sbjct: 13  RGIPQAPFIENVNEIIKDPS-DFELCFNKFQERLSKYKFMQESKLATIKQLKTRIPDLEN 71

Query: 87  CLDIVATLQAKKEGG----EALTADFEVSEGIFSRARIEDTD-----SVCLWLGANVMLE 137
            L I  +L+   + G    E +   +++++ ++++A+++  +      V LWLGA+VMLE
Sbjct: 72  TLKICQSLRNHSDEGDESDEPILLHYQLNDTLYTKAQVDIPEDRADLKVGLWLGADVMLE 131

Query: 138 YSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQRR-IRQAA 196
           Y  DEA  LL+K L +++ SL V   D++FLR+ +T  +V  AR+YNWDV +R+ ++QA 
Sbjct: 132 YPIDEAIELLKKKLADSEQSLTVSTEDVEFLRENITTMEVNCARLYNWDVQRRQDLKQAQ 191

Query: 197 AAAAN 201
               N
Sbjct: 192 EGTKN 196

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q10143|PFD3_SCHPO Probable prefoldin subunit 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC3H8.07c PE=3 SV=1

 Score =  117 bits (294), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 66/166 (39%), Positives = 100/166 (60%), Gaps = 8/166 (4%)

Query: 27  RGIPAAQFVEDVQTFLSQLDLD-VNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIE 85
           RGIP AQF E       +L ++     L   QE + +YK +E  ++ +   L  KIPDI 
Sbjct: 7   RGIPPAQFFE-----FKELSMEEAQGHLEKFQEAIAKYKFMETSVVRRVASLDDKIPDIR 61

Query: 86  KCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATV 145
           K L  V  L+ ++  G++ T  +E+++ + ++A +E  D+V LWLGANVMLEY+ +EA  
Sbjct: 62  KTLQSVQFLKERQ--GDSFTVTYELNDTLNAKAEVEAKDNVYLWLGANVMLEYTVEEAEA 119

Query: 146 LLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQRR 191
           LL + L +A+ +L+    DL+FLR QVT  +V  ARVYN+ V  R+
Sbjct: 120 LLTQKLNSAEETLKACKEDLEFLRAQVTTMEVNTARVYNYTVLLRK 165

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	203
225432002	188	PREDICTED: probable prefoldin subunit 3	0.906	0.978	0.848	2e-87
255556430	185	prefoldin subunit, putative [Ricinus com	0.876	0.962	0.870	2e-86
115489090	196	Os12g0562900 [Oryza sativa Japonica Grou	0.847	0.877	0.872	3e-83
351727893	195	uncharacterized protein LOC100527836 [Gl	0.881	0.917	0.843	5e-83
449432928	194	PREDICTED: probable prefoldin subunit 3-	0.866	0.907	0.842	4e-82
414878111	188	TPA: prefoldin subunit 3 [Zea mays]	0.886	0.957	0.818	4e-82
388508614	192	unknown [Lotus japonicus]	0.881	0.932	0.821	5e-82
226504476	188	LOC100282989 [Zea mays] gi|195626666|gb|	0.876	0.946	0.825	5e-82
224108764	192	predicted protein [Populus trichocarpa]	0.916	0.968	0.801	7e-82
242083808	191	hypothetical protein SORBIDRAFT_08g01827	0.842	0.895	0.865	7e-82

>gi|225432002|ref|XP_002279358.1| PREDICTED: probable prefoldin subunit 3 [Vitis vinifera]

 Score =  327 bits (837), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 157/185 (84%), Positives = 171/185 (92%), Gaps = 1/185 (0%)

Query: 15  IATAAASP-TTERRGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQ 73
           +A++++SP  TERRGIP A FV DVQT+L++  LD NSALAFLQERLQQYKLVEMKLLAQ
Sbjct: 1   MASSSSSPAVTERRGIPGASFVHDVQTYLTESGLDCNSALAFLQERLQQYKLVEMKLLAQ 60

Query: 74  QRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGAN 133
           QRDLQAKIPDIEKCLD+VATL+AKK  GE L ADFEVSEGI+SRARIEDTDSVCLWLGAN
Sbjct: 61  QRDLQAKIPDIEKCLDVVATLEAKKGTGEPLIADFEVSEGIYSRARIEDTDSVCLWLGAN 120

Query: 134 VMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQRRIR 193
           VMLEYSC+EAT LLQKNLENAKASLEVL+ DLQFLRDQVTITQVT+ARVYNWDVHQRRIR
Sbjct: 121 VMLEYSCEEATALLQKNLENAKASLEVLVTDLQFLRDQVTITQVTIARVYNWDVHQRRIR 180

Query: 194 QAAAA 198
           QAAAA
Sbjct: 181 QAAAA 185

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556430|ref|XP_002519249.1| prefoldin subunit, putative [Ricinus communis] gi|223541564|gb|EEF43113.1| prefoldin subunit, putative [Ricinus communis]

 Score =  323 bits (829), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 155/178 (87%), Positives = 166/178 (93%)

Query: 19  AASPTTERRGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQ 78
           A+   TERRGIP AQFVEDV+T+LSQ  LDVNS L+FLQERLQQYKLVEMKLLAQQRDLQ
Sbjct: 2   ASVSATERRGIPGAQFVEDVETYLSQSGLDVNSGLSFLQERLQQYKLVEMKLLAQQRDLQ 61

Query: 79  AKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEY 138
           AKIPDIEKCLD+VATLQAKK  GEAL ADFEVSEGI+SRA IEDTDSVCLWLGANVMLEY
Sbjct: 62  AKIPDIEKCLDVVATLQAKKGTGEALLADFEVSEGIYSRACIEDTDSVCLWLGANVMLEY 121

Query: 139 SCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQRRIRQAA 196
           SC+EAT LLQKNL+NAKASLEVL+ADLQFLRDQVTITQVT+ARVYNWDVHQRR+RQAA
Sbjct: 122 SCEEATALLQKNLDNAKASLEVLVADLQFLRDQVTITQVTIARVYNWDVHQRRMRQAA 179

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115489090|ref|NP_001067032.1| Os12g0562900 [Oryza sativa Japonica Group] gi|77556159|gb|ABA98955.1| prefoldin subunit 3, putative, expressed [Oryza sativa Japonica Group] gi|113649539|dbj|BAF30051.1| Os12g0562900 [Oryza sativa Japonica Group] gi|215701045|dbj|BAG92469.1| unnamed protein product [Oryza sativa Japonica Group] gi|215765550|dbj|BAG87247.1| unnamed protein product [Oryza sativa Japonica Group] gi|222617303|gb|EEE53435.1| hypothetical protein OsJ_36518 [Oryza sativa Japonica Group]

 Score =  313 bits (801), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 150/172 (87%), Positives = 161/172 (93%)

Query: 24  TERRGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPD 83
           TERRGIPAA FVEDV+T+L Q  LDVNS LAFLQERLQQYK+VEMKLLAQQRDLQAKIPD
Sbjct: 21  TERRGIPAASFVEDVETYLRQAGLDVNSGLAFLQERLQQYKIVEMKLLAQQRDLQAKIPD 80

Query: 84  IEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEA 143
           IEKCLDIVATLQAKK  GEALTADFE+SEGI+SRA+IEDTDSVCLWLGANVMLEYSCDEA
Sbjct: 81  IEKCLDIVATLQAKKALGEALTADFELSEGIYSRAKIEDTDSVCLWLGANVMLEYSCDEA 140

Query: 144 TVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQRRIRQA 195
             LL+KNLENAKASLEVL+ADLQFLRDQ TITQVT+ARV+NWDVHQRR +QA
Sbjct: 141 NALLKKNLENAKASLEVLVADLQFLRDQQTITQVTIARVFNWDVHQRRSKQA 192

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727893|ref|NP_001238200.1| uncharacterized protein LOC100527836 [Glycine max] gi|255633340|gb|ACU17027.1| unknown [Glycine max]

 Score =  312 bits (799), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 151/179 (84%), Positives = 165/179 (92%)

Query: 24  TERRGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPD 83
           TERRGIP AQFVEDVQT+L+Q  LDV SALAFLQERLQQYK+VEMKLLAQQRDLQAKIPD
Sbjct: 17  TERRGIPGAQFVEDVQTYLTQSGLDVGSALAFLQERLQQYKVVEMKLLAQQRDLQAKIPD 76

Query: 84  IEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEA 143
           IEKCLD+VATL+AKK  GE L ADFEVSEGI+S+ARIE+TDSVCLWLGANVMLEYS +EA
Sbjct: 77  IEKCLDVVATLKAKKGTGEELIADFEVSEGIYSQARIEETDSVCLWLGANVMLEYSLEEA 136

Query: 144 TVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQRRIRQAAAAAANE 202
           T LLQKNL+NA+ASLEVLIADLQFLRDQVTITQVT+ARVYNWDVHQRRI+QA A  A +
Sbjct: 137 TGLLQKNLDNARASLEVLIADLQFLRDQVTITQVTIARVYNWDVHQRRIQQAVATTAQD 195

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432928|ref|XP_004134250.1| PREDICTED: probable prefoldin subunit 3-like [Cucumis sativus]

 Score =  309 bits (792), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 150/178 (84%), Positives = 165/178 (92%), Gaps = 2/178 (1%)

Query: 23  TTERRGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIP 82
            T+RRGIPAAQFVEDV+T+LSQL LDV SALAFLQERLQQYKLVEMKLLAQQRDLQAKIP
Sbjct: 13  VTDRRGIPAAQFVEDVRTYLSQLQLDVQSALAFLQERLQQYKLVEMKLLAQQRDLQAKIP 72

Query: 83  DIEKCLDIVATLQAKKEG--GEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSC 140
           DI+KCLDIVATLQAKKE   GE L ADFE+SEGI+SRARIE+TDSVCLWLGANVML+YS 
Sbjct: 73  DIKKCLDIVATLQAKKEAATGEPLVADFEISEGIYSRARIEETDSVCLWLGANVMLDYSY 132

Query: 141 DEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQRRIRQAAAA 198
           +EA  LLQKNL+NAKASLEVL+ADLQFLRDQVTITQVT+ARVYNWDVHQRR++ A A+
Sbjct: 133 EEAITLLQKNLDNAKASLEVLVADLQFLRDQVTITQVTIARVYNWDVHQRRVQLAGAS 190

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|414878111|tpg|DAA55242.1| TPA: prefoldin subunit 3 [Zea mays]

 Score =  309 bits (791), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 149/182 (81%), Positives = 164/182 (90%), Gaps = 2/182 (1%)

Query: 16  ATAAASP--TTERRGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQ 73
           A AA++P    ERRGIPAA FVEDV+ +L Q+ LDVNSALAFLQERLQQYK+VEMKLLAQ
Sbjct: 3   AAAASTPQGVAERRGIPAAAFVEDVEAYLRQVGLDVNSALAFLQERLQQYKIVEMKLLAQ 62

Query: 74  QRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGAN 133
           QRDLQAKIPDIEKCLDIV TLQAKK+ GEAL ADFE+SEGI+SRA+IEDTDSVCLWLGAN
Sbjct: 63  QRDLQAKIPDIEKCLDIVTTLQAKKDLGEALIADFELSEGIYSRAKIEDTDSVCLWLGAN 122

Query: 134 VMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQRRIR 193
           VMLEYSCDEA  LL+KNLENAKASLEVL+ADL FLRDQ TITQVT+ARV+NWDVH RR +
Sbjct: 123 VMLEYSCDEANALLKKNLENAKASLEVLVADLHFLRDQQTITQVTIARVFNWDVHHRRSK 182

Query: 194 QA 195
           QA
Sbjct: 183 QA 184

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388508614|gb|AFK42373.1| unknown [Lotus japonicus]

 Score =  309 bits (791), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 147/179 (82%), Positives = 162/179 (90%)

Query: 24  TERRGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPD 83
           TERRGIPAAQFVEDVQT+L+QL LDVNS LAFLQERLQQY+LVEMKLLAQQRDLQAKIPD
Sbjct: 14  TERRGIPAAQFVEDVQTYLTQLGLDVNSTLAFLQERLQQYRLVEMKLLAQQRDLQAKIPD 73

Query: 84  IEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEA 143
           IEKCLD+V TLQAKK  GE L  DFEVSEGI+SRARI++TDSVCLWLGANVMLEYS +EA
Sbjct: 74  IEKCLDVVGTLQAKKGTGEELITDFEVSEGIYSRARIDETDSVCLWLGANVMLEYSLEEA 133

Query: 144 TVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQRRIRQAAAAAANE 202
           T LL KNL+NAKASLEVL+ADL FLRDQVTITQVT+ARVYNWDVH RR++Q A+  A +
Sbjct: 134 TSLLHKNLDNAKASLEVLVADLLFLRDQVTITQVTIARVYNWDVHNRRLQQVASTTAQD 192

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226504476|ref|NP_001149365.1| LOC100282989 [Zea mays] gi|195626666|gb|ACG35163.1| prefoldin subunit 3 [Zea mays]

 Score =  309 bits (791), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 151/183 (82%), Positives = 165/183 (90%), Gaps = 5/183 (2%)

Query: 18  AAASPTT-----ERRGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLA 72
           AAAS +T     ERRGIPAA FVEDV+ +L Q+ LDVNSALAFLQERLQQYK+VEMKLLA
Sbjct: 2   AAASVSTPQGVAERRGIPAAAFVEDVEAYLRQVGLDVNSALAFLQERLQQYKIVEMKLLA 61

Query: 73  QQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGA 132
           QQRDLQAKIPDIEKCLDIVATLQAKK+ GEAL ADFE+SEGI+SRA+IEDTDSVCLWLGA
Sbjct: 62  QQRDLQAKIPDIEKCLDIVATLQAKKDLGEALIADFELSEGIYSRAKIEDTDSVCLWLGA 121

Query: 133 NVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQRRI 192
           NVMLEYSCDEA  LL+KNLENAKASLEVL+ADL FLRDQ TITQVT+ARV+NWDVH RR 
Sbjct: 122 NVMLEYSCDEANALLKKNLENAKASLEVLVADLHFLRDQQTITQVTIARVFNWDVHHRRS 181

Query: 193 RQA 195
           +QA
Sbjct: 182 KQA 184

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224108764|ref|XP_002314961.1| predicted protein [Populus trichocarpa] gi|222864001|gb|EEF01132.1| predicted protein [Populus trichocarpa]

 Score =  308 bits (789), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 153/191 (80%), Positives = 167/191 (87%), Gaps = 5/191 (2%)

Query: 9   ASSSSEIATAAASPTTERRGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEM 68
           ASSSS      A  TTERRGIP AQFVEDV+T+L+Q  LDVNS+L+FLQERLQQYKLVEM
Sbjct: 2   ASSSS----TEAETTTERRGIPGAQFVEDVETYLTQSGLDVNSSLSFLQERLQQYKLVEM 57

Query: 69  KLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCL 128
           KLLAQ RDLQAKIPDIEKCLD+VA L AKK  GE L ADFEVSEGI+S+ARIED  SVCL
Sbjct: 58  KLLAQHRDLQAKIPDIEKCLDVVAILLAKKGTGEPLIADFEVSEGIYSQARIEDAGSVCL 117

Query: 129 WLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVH 188
           WLGANVMLEYSC+EAT LLQKNL+NAKASLEVL+ADLQFLRDQVTITQVT+ARVYNWDVH
Sbjct: 118 WLGANVMLEYSCEEATALLQKNLDNAKASLEVLVADLQFLRDQVTITQVTIARVYNWDVH 177

Query: 189 Q-RRIRQAAAA 198
           Q RR+R+A  A
Sbjct: 178 QKRRMREAVTA 188

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242083808|ref|XP_002442329.1| hypothetical protein SORBIDRAFT_08g018270 [Sorghum bicolor] gi|241943022|gb|EES16167.1| hypothetical protein SORBIDRAFT_08g018270 [Sorghum bicolor]

 Score =  308 bits (789), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 148/171 (86%), Positives = 160/171 (93%)

Query: 25  ERRGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDI 84
           ERRGIPAA FVEDV+ +L Q  LDVNSALAFLQERLQQYK+VEMKLLAQQRDLQAKIPDI
Sbjct: 17  ERRGIPAAAFVEDVEAYLRQAGLDVNSALAFLQERLQQYKIVEMKLLAQQRDLQAKIPDI 76

Query: 85  EKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEAT 144
           EKCLDIVATLQAKK+ GEAL ADFE+SEGI+SRA+IEDTDSVCLWLGANVMLEYSCDEA 
Sbjct: 77  EKCLDIVATLQAKKDLGEALIADFELSEGIYSRAKIEDTDSVCLWLGANVMLEYSCDEAN 136

Query: 145 VLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQRRIRQA 195
            LL+KNLENAKASLEVL+ADLQFLRDQ TITQVT+ARV+NWDVHQRR +QA
Sbjct: 137 ALLKKNLENAKASLEVLVADLQFLRDQQTITQVTIARVFNWDVHQRRSKQA 187

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	203
TAIR|locus:2157819	195	PFD3 "prefoldin 3" [Arabidopsi	0.832	0.866	0.834	4.1e-72
UNIPROTKB|K7GNY9	197	VBP1 "Uncharacterized protein"	0.802	0.827	0.475	4.4e-36
UNIPROTKB|F6XQ49	197	VBP1 "Uncharacterized protein"	0.802	0.827	0.475	7.2e-36
MGI|MGI:1333804	196	Vbp1 "von Hippel-Lindau bindin	0.802	0.831	0.469	7.2e-36
UNIPROTKB|P61758	197	VBP1 "Prefoldin subunit 3" [Ho	0.802	0.827	0.463	1.5e-35
UNIPROTKB|G5E5K1	197	VBP1 "Prefoldin subunit 3" [Bo	0.802	0.827	0.475	1.9e-35
UNIPROTKB|F1RZQ7	197	VBP1 "Uncharacterized protein"	0.802	0.827	0.469	1.9e-35
UNIPROTKB|E1BXR1	200	VBP1 "Uncharacterized protein"	0.802	0.815	0.469	2.4e-35
UNIPROTKB|Q2TBX2	197	VBP1 "Prefoldin subunit 3" [Bo	0.802	0.827	0.475	5.1e-35
ZFIN|ZDB-GENE-050522-494	236	vbp1 "von Hippel-Lindau bindin	0.802	0.690	0.463	7.4e-34

TAIR|locus:2157819 PFD3 "prefoldin 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 729 (261.7 bits), Expect = 4.1e-72, P = 4.1e-72
 Identities = 141/169 (83%), Positives = 159/169 (94%)

Query:    26 RRGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIE 85
             RRGIPAA+F++DV+T+LSQ  LD NSALAF QERLQQYK+VEMKLLAQQRDLQAKIPDIE
Sbjct:    16 RRGIPAAKFIQDVETYLSQSGLDPNSALAFHQERLQQYKVVEMKLLAQQRDLQAKIPDIE 75

Query:    86 KCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATV 145
             KCL++VATL+AKK  GEAL ADFEVSEGI+SRA IEDTDSVCLWLGANVMLEYSC+EA+ 
Sbjct:    76 KCLEVVATLEAKKGTGEALLADFEVSEGIYSRACIEDTDSVCLWLGANVMLEYSCEEASA 135

Query:   146 LLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQRRIRQ 194
             LL+ NLENAKASLEVL+ADLQFLRDQVT+TQVT+ARVYNWDVHQRR++Q
Sbjct:   136 LLKNNLENAKASLEVLVADLQFLRDQVTVTQVTIARVYNWDVHQRRVKQ 184

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0016272 "prefoldin complex" evidence=IEA;ISS

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

UNIPROTKB|K7GNY9 VBP1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
 Identities = 78/164 (47%), Positives = 111/164 (67%)

Query:    28 GIPAAQFVEDVQTFLSQLDLDV-NSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEK 86
             GIP A FVEDV +F+ Q   +  ++ L  L E+ Q+YK +E+ L  ++R L+ +IP+I++
Sbjct:    24 GIPEAVFVEDVDSFMKQPGNETADTVLKKLDEQYQKYKFMELNLAQKKRRLKGQIPEIKQ 83

Query:    87 CLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATVL 146
              L+I+  +Q KKE   +L   F +++ ++ +A +  TD VCLWLGANVMLEY  DEA  L
Sbjct:    84 TLEILKYMQKKKESTSSLETRFLLADNLYCKASVPPTDKVCLWLGANVMLEYDIDEAQAL 143

Query:   147 LQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQR 190
             L+KNL  A  +L+ L  DL FLRDQ T T+V +ARVYNWDV +R
Sbjct:   144 LEKNLSTATKNLDSLEEDLDFLRDQFTTTEVNMARVYNWDVKRR 187

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

UNIPROTKB|F6XQ49 VBP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
 Identities = 78/164 (47%), Positives = 111/164 (67%)

Query:    28 GIPAAQFVEDVQTFLSQLDLDV-NSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEK 86
             GIP A FVEDV +F+ Q   +  ++ L  L E+ Q+YK +E+ L  ++R L+ +IP+I++
Sbjct:    24 GIPEAVFVEDVDSFMKQPGNETADTVLKKLDEQYQKYKFMELNLAQKKRRLKGQIPEIKQ 83

Query:    87 CLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATVL 146
              L+I+  +Q KKE   +L   F +++ ++ +A +  TD VCLWLGANVMLEY  DEA  L
Sbjct:    84 TLEILKYMQKKKESTGSLETRFLLADNLYCKASVPPTDKVCLWLGANVMLEYDIDEAQAL 143

Query:   147 LQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQR 190
             L+KNL  A  +L+ L  DL FLRDQ T T+V +ARVYNWDV +R
Sbjct:   144 LEKNLSTATKNLDSLEEDLDFLRDQFTTTEVNMARVYNWDVKRR 187

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

MGI|MGI:1333804 Vbp1 "von Hippel-Lindau binding protein 1" [Mus musculus (taxid:10090)]

 Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
 Identities = 77/164 (46%), Positives = 111/164 (67%)

Query:    28 GIPAAQFVEDVQTFLSQLDLDV-NSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEK 86
             GIP A FVEDV +F+ Q   +  ++ L  L E+ Q+YK +E+ L  ++R L+ +IP+I++
Sbjct:    23 GIPEAVFVEDVDSFMKQPGNETADTVLKKLDEQYQKYKFMELNLAQKKRRLKGQIPEIKQ 82

Query:    87 CLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATVL 146
              L+I+  +Q KKE   ++   F +++ ++ +A +  TD VCLWLGANVMLEY  DEA  L
Sbjct:    83 TLEILKYMQKKKESTNSMETRFLLADNLYCKASVPPTDKVCLWLGANVMLEYDIDEAQAL 142

Query:   147 LQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQR 190
             L+KNL  A  +L+ L  DL FLRDQ T T+V +ARVYNWDV +R
Sbjct:   143 LEKNLSTATKNLDSLEEDLDFLRDQFTTTEVNMARVYNWDVKRR 186

GO:0005634 "nucleus" evidence=TAS

GO:0005737 "cytoplasm" evidence=TAS

GO:0006457 "protein folding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

UNIPROTKB|P61758 VBP1 "Prefoldin subunit 3" [Homo sapiens (taxid:9606)]

 Score = 384 (140.2 bits), Expect = 1.5e-35, P = 1.5e-35
 Identities = 76/164 (46%), Positives = 111/164 (67%)

Query:    28 GIPAAQFVEDVQTFLSQLDLDV-NSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEK 86
             GIP A FVEDV +F+ Q   +  ++ L  L E+ Q+YK +E+ L  ++R L+ +IP+I++
Sbjct:    24 GIPEAVFVEDVDSFMKQPGNETADTVLKKLDEQYQKYKFMELNLAQKKRRLKGQIPEIKQ 83

Query:    87 CLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATVL 146
              L+I+  +Q KKE   ++   F +++ ++ +A +  TD +CLWLGANVMLEY  DEA  L
Sbjct:    84 TLEILKYMQKKKESTNSMETRFLLADNLYCKASVPPTDKMCLWLGANVMLEYDIDEAQAL 143

Query:   147 LQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQR 190
             L+KNL  A  +L+ L  DL FLRDQ T T+V +ARVYNWDV +R
Sbjct:   144 LEKNLSTATKNLDSLEEDLDFLRDQFTTTEVNMARVYNWDVKRR 187

GO:0016272 "prefoldin complex" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006457 "protein folding" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0051084 "'de novo' posttranslational protein folding" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|G5E5K1 VBP1 "Prefoldin subunit 3" [Bos taurus (taxid:9913)]

 Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
 Identities = 78/164 (47%), Positives = 110/164 (67%)

Query:    28 GIPAAQFVEDVQTFLSQLDLDV-NSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEK 86
             GIP A FVEDV +F+ Q   +  +  L  L E+ Q+YK +E+ L  ++R L+ +IP+I++
Sbjct:    24 GIPEAVFVEDVDSFMKQPGNETADIVLKKLDEQYQKYKFMELNLAQKKRRLKGQIPEIKQ 83

Query:    87 CLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATVL 146
              L+I+  +Q KKE   +L   F +++ ++ +A +  TD VCLWLGANVMLEY  DEA  L
Sbjct:    84 TLEILKYMQKKKESTSSLETRFLLADNLYCKASVPPTDKVCLWLGANVMLEYDIDEAQAL 143

Query:   147 LQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQR 190
             L+KNL  A  +L+ L  DL FLRDQ T T+V +ARVYNWDV +R
Sbjct:   144 LEKNLLTATKNLDSLEEDLDFLRDQFTTTEVNMARVYNWDVKRR 187

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

UNIPROTKB|F1RZQ7 VBP1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
 Identities = 77/164 (46%), Positives = 110/164 (67%)

Query:    28 GIPAAQFVEDVQTFLSQLDLDV-NSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEK 86
             GIP A FVEDV +F+ Q   +  ++ L  L E+ Q+YK +E+ L  ++R L+ +IP+I++
Sbjct:    24 GIPEAVFVEDVDSFMKQPGNETADTVLKKLDEQYQKYKFMELNLAQKKRRLKGQIPEIKQ 83

Query:    87 CLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATVL 146
              L+I+  +Q KKE   +L   F +++ ++ +A +  TD VCLWLGANVMLEY  DEA  L
Sbjct:    84 TLEILKYMQKKKESTSSLETRFLLADNLYCKASVPPTDKVCLWLGANVMLEYDIDEAQAL 143

Query:   147 LQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQR 190
             L+KNL  A  +L+ L  DL FLRDQ T T+  +ARVYNWDV +R
Sbjct:   144 LEKNLSTATKNLDSLEEDLDFLRDQFTTTEQNMARVYNWDVKRR 187

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

UNIPROTKB|E1BXR1 VBP1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
 Identities = 77/164 (46%), Positives = 109/164 (66%)

Query:    28 GIPAAQFVEDVQTFLSQLDLDV-NSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEK 86
             GIP A FVEDV +F+ Q   +  +  L  L E+ Q+YK +E+ L  ++R L+ +IP+I++
Sbjct:    27 GIPEAVFVEDVDSFMKQPGNETADVVLKKLDEQYQKYKFLELNLAQKKRRLKGQIPEIKQ 86

Query:    87 CLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATVL 146
              L+I+  +Q KKE    +   F +++ ++ +A +  TD VCLWLGANVMLEY  DEA  L
Sbjct:    87 TLEILKHMQKKKESTNPMETRFLLADNLYCKASVPPTDKVCLWLGANVMLEYDIDEAQAL 146

Query:   147 LQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQR 190
             L+KNL  A  +L+ L  DL FLRDQ T T+V +ARVYNWDV +R
Sbjct:   147 LEKNLSTATRNLDSLEEDLDFLRDQFTTTEVNMARVYNWDVKRR 190

GO:0006457 "protein folding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

UNIPROTKB|Q2TBX2 VBP1 "Prefoldin subunit 3" [Bos taurus (taxid:9913)]

 Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
 Identities = 78/164 (47%), Positives = 109/164 (66%)

Query:    28 GIPAAQFVEDVQTFLSQLDLDV-NSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEK 86
             GIP A FVEDV +F+ Q   +  +  L  L E+ Q+YK +E+ L  ++R L+ +IP+I++
Sbjct:    24 GIPEAVFVEDVDSFMKQPGNETADIVLKKLDEQYQKYKFMELNLAQKKRRLKGQIPEIKQ 83

Query:    87 CLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATVL 146
              L+I+   Q KKE   +L   F +++ ++ +A +  TD VCLWLGANVMLEY  DEA  L
Sbjct:    84 TLEILKYKQKKKESTSSLETRFLLADNLYCKASVPPTDKVCLWLGANVMLEYDIDEAQAL 143

Query:   147 LQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQR 190
             L+KNL  A  +L+ L  DL FLRDQ T T+V +ARVYNWDV +R
Sbjct:   144 LEKNLLTATKNLDSLEEDLDFLRDQFTTTEVNMARVYNWDVKRR 187

GO:0051086 "chaperone mediated protein folding independent of cofactor" evidence=TAS

GO:0006457 "protein folding" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0005634 "nucleus" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

ZFIN|ZDB-GENE-050522-494 vbp1 "von Hippel-Lindau binding protein 1" [Danio rerio (taxid:7955)]

 Score = 368 (134.6 bits), Expect = 7.4e-34, P = 7.4e-34
 Identities = 76/164 (46%), Positives = 107/164 (65%)

Query:    28 GIPAAQFVEDVQTFLSQLDLDVNSA-LAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEK 86
             GIP A FVEDV  F+ Q   D   A L  L E+ Q+YK +E+ L  ++  L+++IP I++
Sbjct:    61 GIPEAIFVEDVDAFMKQPGNDTADAVLRKLDEQYQKYKYMELNLGQKKLRLKSQIPQIKQ 120

Query:    87 CLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATVL 146
              L+I+  +Q KK+  + +   F +++ ++ +A +  TD VCLWLGANVMLEY  D A  L
Sbjct:   121 TLEILRHMQKKKDTTDPMETHFLLADNVYCKASVPPTDKVCLWLGANVMLEYDIDAAQAL 180

Query:   147 LQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQR 190
             L+KNL  A  +L+ L  DL FLRDQ T T+V +ARVYNWDV +R
Sbjct:   181 LEKNLATASRNLDSLEEDLDFLRDQFTTTEVNMARVYNWDVKRR 224

GO:0006457 "protein folding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P48363	PFD3_YEAST	No assigned EC number	0.3567	0.8571	0.8743	yes	no
O18054	PFD3_CAEEL	No assigned EC number	0.36	0.8423	0.9243	yes	no
P57741	PFD3_ARATH	No assigned EC number	0.8181	0.8669	0.9025	yes	no
P61758	PFD3_HUMAN	No assigned EC number	0.4293	0.8965	0.9238	yes	no
P61759	PFD3_MOUSE	No assigned EC number	0.4426	0.8965	0.9285	yes	no
Q2TBX2	PFD3_BOVIN	No assigned EC number	0.4408	0.8965	0.9238	yes	no
Q5RCG9	PFD3_PONAB	No assigned EC number	0.4345	0.8965	0.9238	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00033164001	SubName- Full=Chromosome chr5 scaffold_64, whole genome shotgun sequence; (188 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00019996001	SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (157 aa)				•	•	•	•		0.944
	GSVIVG00008670001	SubName- Full=Chromosome chr10 scaffold_204, whole genome shotgun sequence; (141 aa)				•	•	•	•		0.927
	GSVIVG00007091001	SubName- Full=Chromosome undetermined scaffold_183, whole genome shotgun sequence; (90 aa)				•	•	•	•		0.888
	GSVIVG00007448001	SubName- Full=Chromosome chr14 scaffold_190, whole genome shotgun sequence; (89 aa)				•	•	•	•		0.835
	GSVIVG00017003001	SubName- Full=Chromosome chr11 scaffold_14, whole genome shotgun sequence; (129 aa)				•	•	•	•		0.798
	GSVIVG00035100001	SubName- Full=Chromosome chr1 scaffold_75, whole genome shotgun sequence; (207 aa)				•	•				0.646
	GSVIVG00019150001	RecName- Full=T-complex protein 1, alpha subunit; (540 aa)				•	•	•	•		0.639
	GSVIVG00021307001	SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (586 aa)				•					0.639
	GSVIVG00019045001	SubName- Full=Putative uncharacterized protein (Chromosome chr15 scaffold_19, whole genome shot [...] (113 aa)				•	•				0.639
	GSVIVG00010470001	SubName- Full=Chromosome chr17 scaffold_263, whole genome shotgun sequence; (386 aa)				•					0.597

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	203
pfam02996	120	pfam02996, Prefoldin, Prefoldin subunit	2e-27
cd00584	129	cd00584, Prefoldin_alpha, Prefoldin alpha subunit;	6e-19
cd00890	129	cd00890, Prefoldin, Prefoldin is a hexameric molec	7e-15
PRK03947	140	PRK03947, PRK03947, prefoldin subunit alpha; Revie	4e-06
COG1730	145	COG1730, GIM5, Predicted prefoldin, molecular chap	2e-05
TIGR00293	126	TIGR00293, TIGR00293, prefoldin, archaeal alpha su	3e-04

>gnl|CDD|202504 pfam02996, Prefoldin, Prefoldin subunit

 Score =  100 bits (250), Expect = 2e-27
 Identities = 39/123 (31%), Positives = 64/123 (52%), Gaps = 3/123 (2%)

Query: 63  YKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIED 122
            K     L A+   L+  I ++EK L+ + TL+ + EG E L     +  G+F +  + D
Sbjct: 1   LKQEIESLQAELARLREAIEELEKTLETLKTLKKEDEGKEVL---VPLGAGLFVKGEVID 57

Query: 123 TDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARV 182
           TD V + LGA   +E S +EA   L+K +E  +  LE L  +L+ L+DQ+T  +  + +V
Sbjct: 58  TDKVLVDLGAGYYVEKSLEEAIEFLKKRIEELEKQLEKLEEELEKLKDQITTLEANLQQV 117

Query: 183 YNW 185
              
Sbjct: 118 QQK 120

This family comprises of several prefoldin subunits. The biogenesis of the cytoskeletal proteins actin and tubulin involves interaction of nascent chains of each of the two proteins with the oligomeric protein prefoldin (PFD) and their subsequent transfer to the cytosolic chaperonin CCT (chaperonin containing TCP-1). Electron microscopy shows that eukaryotic PFD, which has a similar structure to its archaeal counterpart, interacts with unfolded actin along the tips of its projecting arms. In its PFD-bound state, actin seems to acquire a conformation similar to that adopted when it is bound to CCT. Length = 120

>gnl|CDD|238327 cd00584, Prefoldin_alpha, Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly

 Score = 78.4 bits (194), Expect = 6e-19
 Identities = 35/132 (26%), Positives = 61/132 (46%), Gaps = 3/132 (2%)

Query: 53  LAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSE 112
           L  L  +LQ  +    +L  +   L   I + E+  + + TL+   EG E L     +  
Sbjct: 1   LEQLAAQLQVLQQEIEELQQELARLNEAIAEYEQAKETLETLKKADEGKETL---VPLGA 57

Query: 113 GIFSRARIEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQV 172
           G+F +A+++DTD V + LG    +E   +EA   L K +E     +E L  +L  L+DQ+
Sbjct: 58  GVFVKAKVKDTDKVLVDLGTGYYVEKDLEEAIEFLDKKIEELTKQIEKLQKELAKLKDQI 117

Query: 173 TITQVTVARVYN 184
              +  +  +  
Sbjct: 118 NTLEAELQELQQ 129

The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils. Length = 129

>gnl|CDD|238453 cd00890, Prefoldin, Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly

 Score = 67.7 bits (166), Expect = 7e-15
 Identities = 40/129 (31%), Positives = 68/129 (52%), Gaps = 3/129 (2%)

Query: 56  LQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIF 115
           L  +LQQ +     L  Q + L+A++ + EK  + + TL+  +E  E L     +  G+F
Sbjct: 4   LAAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLKKAEEEKELLVP---LGAGLF 60

Query: 116 SRARIEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTIT 175
            +A ++D D V + LG  V +E S +EA   L+K LE  +  +E L   L+ L+DQ+T  
Sbjct: 61  VKAEVKDDDKVLVDLGTGVYVEKSLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITEL 120

Query: 176 QVTVARVYN 184
           Q  + ++  
Sbjct: 121 QEELQQLQQ 129

The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils. Length = 129

>gnl|CDD|235179 PRK03947, PRK03947, prefoldin subunit alpha; Reviewed

 Score = 44.1 bits (105), Expect = 4e-06
 Identities = 38/118 (32%), Positives = 62/118 (52%), Gaps = 5/118 (4%)

Query: 56  LQERLQQYKLVEMKLLAQQRD-LQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGI 114
           L  +LQ  +  +++ L QQ + LQA I +++   + +  L++K EG E L     +  G 
Sbjct: 11  LAAQLQALQ-AQIEALQQQLEELQASINELDTAKETLEELKSKGEGKETL---VPIGAGS 66

Query: 115 FSRARIEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQV 172
           F +A+++D D V + LGA    E   DEA  +L K  E  + +LE L   LQ L  ++
Sbjct: 67  FVKAKVKDKDKVIVSLGAGYSAEKDLDEAIEILDKRKEELEKALEKLEEALQKLASRI 124

Length = 140

>gnl|CDD|224644 COG1730, GIM5, Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 3/118 (2%)

Query: 56  LQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIF 115
           L  +LQ  +     L AQ   L A I +++  ++ +  L+   EG E L     V  G+F
Sbjct: 11  LAAQLQILQSQIESLQAQIAALNAAISELQTAIETLENLKGAGEGKEVL---VPVGAGLF 67

Query: 116 SRARIEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVT 173
            +A+++D D V + +G+    E S DEA   L+K +E  + ++E L   L  L  ++ 
Sbjct: 68  VKAKVKDMDKVIVSIGSGYYAEKSADEAIEFLKKRIEELEKAIEKLQQALAELAQRIE 125

Length = 145

>gnl|CDD|129394 TIGR00293, TIGR00293, prefoldin, archaeal alpha subunit/eukaryotic subunit 5

 Score = 38.8 bits (91), Expect = 3e-04
 Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 6/117 (5%)

Query: 56  LQERLQQYKLVEMKLLAQQRD-LQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGI 114
           L   LQ  +  +++ L  Q   L+A I ++E  ++ +  L+   EG E L     V  G 
Sbjct: 4   LAAELQILQQ-QVESLQAQIAALRALIAELETAIETLEDLK-GAEGKETLVP---VGAGS 58

Query: 115 FSRARIEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQ 171
           F +A+++DTD V + +G+   +E   +EA   L+K +E  + ++E L   L  L  +
Sbjct: 59  FVKAKVKDTDKVLVSIGSGYYVEKDAEEAIEFLKKRIEELEKAIEKLQEALAELASR 115

Members of this protein family, rich in coiled coil regions, are molecular chaperones in the class of the prefoldin (GimC) alpha subunit. Prefoldin is a hexamer of two alpha and four beta subunits. This protein appears universal in the archaea but is restricted to Aquifex aeolicus among bacteria so far. Eukaryotes have several related proteins; only prefoldin subunit 5, which appeared the most similar to archaeal prefoldin alpha, is included in this model. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil [Protein fate, Protein folding and stabilization]. Length = 126

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	203
KOG3313	187	consensus Molecular chaperone Prefoldin, subunit 3	100.0
PRK03947	140	prefoldin subunit alpha; Reviewed	99.95
TIGR00293	126	prefoldin, archaeal alpha subunit/eukaryotic subun	99.94
cd00584	129	Prefoldin_alpha Prefoldin alpha subunit; Prefoldin	99.93
PF02996	120	Prefoldin: Prefoldin subunit; InterPro: IPR004127	99.9
cd00890	129	Prefoldin Prefoldin is a hexameric molecular chape	99.89
COG1730	145	GIM5 Predicted prefoldin, molecular chaperone impl	99.79
PRK14011	144	prefoldin subunit alpha; Provisional	99.79
PRK01203	130	prefoldin subunit alpha; Provisional	99.68
KOG3048	153	consensus Molecular chaperone Prefoldin, subunit 5	98.8
KOG3047	157	consensus Predicted transcriptional regulator UXT	98.69
cd00632	105	Prefoldin_beta Prefoldin beta; Prefoldin is a hexa	98.56
TIGR02338	110	gimC_beta prefoldin, beta subunit, archaeal. Chape	98.54
PF01920	106	Prefoldin_2: Prefoldin subunit; InterPro: IPR00277	98.06
PRK09343	121	prefoldin subunit beta; Provisional	97.35
cd00890	129	Prefoldin Prefoldin is a hexameric molecular chape	97.18
COG1382	119	GimC Prefoldin, chaperonin cofactor [Posttranslati	97.11
PRK03947	140	prefoldin subunit alpha; Reviewed	96.63
KOG4098	140	consensus Molecular chaperone Prefoldin, subunit 2	96.6
TIGR00293	126	prefoldin, archaeal alpha subunit/eukaryotic subun	96.37
cd00584	129	Prefoldin_alpha Prefoldin alpha subunit; Prefoldin	95.57
KOG3130	514	consensus Uncharacterized conserved protein [Funct	91.57
PRK01203	130	prefoldin subunit alpha; Provisional	89.77
PRK14011	144	prefoldin subunit alpha; Provisional	82.31

>KOG3313 consensus Molecular chaperone Prefoldin, subunit 3 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.9e-68  Score=441.61  Aligned_cols=174  Identities=55%  Similarity=0.867  Sum_probs=166.6

Q ss_pred             CCCCCCCCcccccccHHHHhccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCC
Q 028810           23 TTERRGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGE  102 (203)
Q Consensus        23 ~~~~rgIP~A~FiedV~~~~~~~~~~~e~~l~~lqe~~~KYk~me~~l~qq~~~L~~kIpdikktLe~V~~L~~k~~~~e  102 (203)
                      .+++||||+|+|||||++|+++|+......++.||++|+||||||.++.+++.+|+.|||||+++|++|+.|.++++.++
T Consensus         9 ~k~~rGIPeA~fiedV~s~~~qp~~~~~~~l~~~~E~~~kYkfme~~l~a~~~~l~~kIPd~entLeiv~~l~~~~~~~~   88 (187)
T KOG3313|consen    9 SKNARGIPEAKFIEDVESYISQPELESLEALKKLQERYGKYKFMEASLLAQKRRLKTKIPDIENTLEIVQTLIAKKDEGE   88 (187)
T ss_pred             hhccCCCChhHHHHHHHHHHcCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhCcccCc
Confidence            68999999999999999999999833333499999999999999999999999999999999999999999999988888


Q ss_pred             CeeEEEEcccceeeeEEeCCCCeEEEecccceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810          103 ALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARV  182 (203)
Q Consensus       103 ~~et~f~L~d~~y~kA~I~~tdkV~LwLGAnVmvEy~l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~EVn~ARv  182 (203)
                      .++++|+|+||+|++|.|||+++|||||||||||||+++||.+||++|+.+++++++.+++||+||||||||||||||||
T Consensus        89 s~~t~f~lsd~vy~ka~V~~~~kV~LWLGAnVMlEY~leEAeaLLkknl~sa~k~l~~~~~DldfLrdQvTTtEVN~Arv  168 (187)
T KOG3313|consen   89 SFETTFLLSDGVYTKASVPPTDKVYLWLGANVMLEYDLEEAEALLKKNLTSAVKSLDVLEEDLDFLRDQVTTTEVNMARV  168 (187)
T ss_pred             ceeEEEEecccceeeeecCCcCeEEEEecceeEEEecHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhceeeeeeeeee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhHHHHHH
Q 028810          183 YNWDVHQRRIRQAA  196 (203)
Q Consensus       183 yN~dV~~r~~~~~~  196 (203)
                      |||||++||+.+..
T Consensus       169 YNw~V~~R~~~~~t  182 (187)
T KOG3313|consen  169 YNWDVKKRRAAKAT  182 (187)
T ss_pred             eechHHHHHHHhhc
Confidence            99999999987653

>PRK03947 prefoldin subunit alpha; Reviewed

Probab=99.95  E-value=1.3e-26  Score=184.79  Aligned_cols=132  Identities=27%  Similarity=0.346  Sum_probs=126.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCCeeEEEEcccceeeeEEeCCCCeEEE
Q 028810           49 VNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCL  128 (203)
Q Consensus        49 ~e~~l~~lqe~~~KYk~me~~l~qq~~~L~~kIpdikktLe~V~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~tdkV~L  128 (203)
                      .++-++.++++|++|+++...|.+++..|...+|+++.++++|+.|..+   .++.+++||||+++|++|+|+++++|++
T Consensus         4 ~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~l~~~---~~~~e~lvplg~~~yv~~~v~~~~kV~v   80 (140)
T PRK03947          4 SEQELEELAAQLQALQAQIEALQQQLEELQASINELDTAKETLEELKSK---GEGKETLVPIGAGSFVKAKVKDKDKVIV   80 (140)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc---CCCCeEEEEcCCCcEEEEEecCCCeEEE
Confidence            4677999999999999999999999999999999999999999999864   3679999999999999999999999999


Q ss_pred             ecccceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810          129 WLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVY  183 (203)
Q Consensus       129 wLGAnVmvEy~l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~EVn~ARvy  183 (203)
                      |||+||||||+++||+++|++|++.++++++.+.++|.++++++..+.-.+.+++
T Consensus        81 ~lG~g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~  135 (140)
T PRK03947         81 SLGAGYSAEKDLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQ  135 (140)
T ss_pred             EcCCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999888865

>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5

Probab=99.94  E-value=1e-25  Score=176.46  Aligned_cols=124  Identities=26%  Similarity=0.342  Sum_probs=117.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCCeeEEEEcccceeeeEEeCCCCeEEEeccc
Q 028810           53 LAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGA  132 (203)
Q Consensus        53 l~~lqe~~~KYk~me~~l~qq~~~L~~kIpdikktLe~V~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~tdkV~LwLGA  132 (203)
                      ++.+..++++|+.+...|.+++..|...+++++.++++|+.|..+    ++.+++||||+++|++|+|+++++|++|||+
T Consensus         1 ~qql~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L~~l~~~----~~~~~lv~lg~~~~v~~~v~~~~~v~v~iG~   76 (126)
T TIGR00293         1 LQQLAAELQILQQQVESLQAQIAALRALIAELETAIETLEDLKGA----EGKETLVPVGAGSFVKAKVKDTDKVLVSIGS   76 (126)
T ss_pred             CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc----CCCeEEEEcCCCeEEEEEeCCCCEEEEEcCC
Confidence            357889999999999999999999999999999999999999742    5789999999999999999999999999999


Q ss_pred             ceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810          133 NVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVA  180 (203)
Q Consensus       133 nVmvEy~l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~EVn~A  180 (203)
                      |||||++++||+++|++|++.+.++++.+.+++.++++|++.+.--+.
T Consensus        77 g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l~  124 (126)
T TIGR00293        77 GYYVEKDAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQEAQ  124 (126)
T ss_pred             CEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999876543

This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.

>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly

Probab=99.93  E-value=1.1e-24  Score=171.14  Aligned_cols=128  Identities=24%  Similarity=0.349  Sum_probs=123.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCCeeEEEEcccceeeeEEeCCCCeEEEecccc
Q 028810           54 AFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGAN  133 (203)
Q Consensus        54 ~~lqe~~~KYk~me~~l~qq~~~L~~kIpdikktLe~V~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~tdkV~LwLGAn  133 (203)
                      +.++..+++|+..-..+++++..|...+++...++++|+.|...   ..+.++++|||.++|++|+|+++++||+|||+|
T Consensus         2 ~~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~---~~~~~~lvplg~~~~~~~~i~~~~~v~v~iG~g   78 (129)
T cd00584           2 EQLAAQLQVLQQEIEELQQELARLNEAIAEYEQAKETLETLKKA---DEGKETLVPLGAGVFVKAKVKDTDKVLVDLGTG   78 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCCeEEEECCCCeEEeEEeCCCCEEEEEcCCC
Confidence            57889999999999999999999999999999999999999753   467999999999999999999999999999999


Q ss_pred             eeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810          134 VMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYN  184 (203)
Q Consensus       134 VmvEy~l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~EVn~ARvyN  184 (203)
                      +|||++++||+++|+++++.++++++.+.+++.+++++++.++.+++++|.
T Consensus        79 ~~vE~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~~~~  129 (129)
T cd00584          79 YYVEKDLEEAIEFLDKKIEELTKQIEKLQKELAKLKDQINTLEAELQELQQ  129 (129)
T ss_pred             EEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999999999874

The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.

>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits

Probab=99.90  E-value=8.1e-23  Score=157.71  Aligned_cols=120  Identities=25%  Similarity=0.338  Sum_probs=110.7

Q ss_pred             HHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCCeeEEEEcccceeeeEEeCCCCeEEEecccceeeeeCHHH
Q 028810           63 YKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDE  142 (203)
Q Consensus        63 Yk~me~~l~qq~~~L~~kIpdikktLe~V~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~tdkV~LwLGAnVmvEy~l~E  142 (203)
                      |+..-.++.+++..|...+.++..++++|+.|..   ...+.++++|||+++|++|+|+++++|++|||+|+++|+|++|
T Consensus         1 l~~~l~~l~~~~~~l~~~~~e~~~~~~~l~~l~~---~~~~~~~lvplg~~~~v~g~i~~~~~vlV~lG~~~~vE~s~~e   77 (120)
T PF02996_consen    1 LQEELENLQQQIEQLEEQIEEYEEAKETLEELKK---EKKEHEILVPLGSGVFVPGKIPDTDKVLVSLGAGYYVEMSLEE   77 (120)
T ss_dssp             HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----TT-EEEEEECTTEEEEEE-SSTTEEEEEEETTEEEEEEHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cCCCceeeecCCCCeEEEEEeCCCCEEEEEeeCCeEEEecHHH
Confidence            3444568899999999999999999999999986   2578999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810          143 ATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNW  185 (203)
Q Consensus       143 A~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~EVn~ARvyN~  185 (203)
                      |+++|++|++.+++.++.+...+..++++++.++..++++|+|
T Consensus        78 A~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~  120 (120)
T PF02996_consen   78 AIEFLKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQQLYQQ  120 (120)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999997

Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.

>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly

Probab=99.89  E-value=1.6e-21  Score=151.49  Aligned_cols=128  Identities=30%  Similarity=0.372  Sum_probs=121.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCCeeEEEEcccceeeeEEeCCCCeEEEecccc
Q 028810           54 AFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGAN  133 (203)
Q Consensus        54 ~~lqe~~~KYk~me~~l~qq~~~L~~kIpdikktLe~V~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~tdkV~LwLGAn  133 (203)
                      +.+...+++|+..-..+++++..+...+++++.+++.|+.|...   .++.+...|+|+++|++|.|+++++|++|||+|
T Consensus         2 ~~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~---~~~~~~l~~~g~~~~~~~~i~~~~~v~v~iG~~   78 (129)
T cd00890           2 QELAAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLKKA---EEEKELLVPLGAGLFVKAEVKDDDKVLVDLGTG   78 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---CCCCeEEEecCCceEEEEEECCCCEEEEEecCC
Confidence            56788999999999999999999999999999999999999864   456778899999999999999999999999999


Q ss_pred             eeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810          134 VMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYN  184 (203)
Q Consensus       134 VmvEy~l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~EVn~ARvyN  184 (203)
                      ++||++++||.++|.++++.+++.++.+++++..++++|+.++.+|+++|+
T Consensus        79 ~~ve~~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~  129 (129)
T cd00890          79 VYVEKSLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQLQQ  129 (129)
T ss_pred             EEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999999999874

The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.

>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]

Probab=99.79  E-value=1.1e-17  Score=136.14  Aligned_cols=128  Identities=26%  Similarity=0.362  Sum_probs=120.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCCeeEEEEcccceeeeEEeCCCCeEEEec
Q 028810           51 SALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWL  130 (203)
Q Consensus        51 ~~l~~lqe~~~KYk~me~~l~qq~~~L~~kIpdikktLe~V~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~tdkV~LwL  130 (203)
                      .-++.+...|+-|+.+-+.|++++..|...+-++..|+++|+.|+..   +++-+++||+|.|+|++|+|.++|+|++.|
T Consensus         6 ~~le~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~lk~~---~~g~E~LVpvGag~fv~~kv~~~~kviV~i   82 (145)
T COG1730           6 QELEELAAQLQILQSQIESLQAQIAALNAAISELQTAIETLENLKGA---GEGKEVLVPVGAGLFVKAKVKDMDKVIVSI   82 (145)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCceEEEEcCCCceEEEEeccCceEEEEc
Confidence            45778999999999999999999999999999999999999999875   235699999999999999999999999999


Q ss_pred             ccceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810          131 GANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVAR  181 (203)
Q Consensus       131 GAnVmvEy~l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~EVn~AR  181 (203)
                      |+||.+|.+++||+++|+++++.+.+.++++.+.|+.|-.+++.++.-+..
T Consensus        83 Gsg~~ae~~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~  133 (145)
T COG1730          83 GSGYYAEKSADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQ  133 (145)
T ss_pred             CCceeeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999998876665

>PRK14011 prefoldin subunit alpha; Provisional

Probab=99.79  E-value=1.2e-17  Score=135.78  Aligned_cols=128  Identities=17%  Similarity=0.203  Sum_probs=119.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCCeeEEEEcccceeeeEEeCCCCeEEEec
Q 028810           51 SALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWL  130 (203)
Q Consensus        51 ~~l~~lqe~~~KYk~me~~l~qq~~~L~~kIpdikktLe~V~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~tdkV~LwL  130 (203)
                      +-++.+...|+.|+.+-+.|++++..|..-+-++..|+++|+.+.      .+-++++|||.|+|++|+|.++|+|++.|
T Consensus         3 ~elq~~~~~l~~~~~qie~L~~si~~L~~a~~e~~~~ie~L~~l~------~~~eiLVPLg~s~yV~g~i~d~dkVlVdI   76 (144)
T PRK14011          3 EELQNQFMALEVYNQQVQKLQEELSSIDMMKMELLKSIESMEGLK------TSEEILIPLGPGAFLKAKIVDPDKAILGV   76 (144)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC------CCCeEEEEcCCCcEEeEEecCCCeEEEEc
Confidence            347788889999999999999999999999999999999999663      46899999999999999999999999999


Q ss_pred             ccceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810          131 GANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYN  184 (203)
Q Consensus       131 GAnVmvEy~l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~EVn~ARvyN  184 (203)
                      |+|++||.+++||+++++++++.++++.+++.+.|+.+++++..++.-+..-|.
T Consensus        77 GtGy~VEk~~~eA~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~L~~k~~  130 (144)
T PRK14011         77 GSDIYLEKDVSEVIEDFKKSVEELDKTKKEGNKKIEELNKEITKLRKELEKRAQ  130 (144)
T ss_pred             cCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999988777644

>PRK01203 prefoldin subunit alpha; Provisional

Probab=99.68  E-value=1.9e-15  Score=121.09  Aligned_cols=118  Identities=16%  Similarity=0.247  Sum_probs=108.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCCeeEEEEcccceeeeEEeCCCCeEEEecccce
Q 028810           55 FLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANV  134 (203)
Q Consensus        55 ~lqe~~~KYk~me~~l~qq~~~L~~kIpdikktLe~V~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~tdkV~LwLGAnV  134 (203)
                      .+.+.|+-|+.+-+.|.+++..|+..+-++..|++.|+.+..    +++-++++|||.++|++|+|.++++|++.+|+|+
T Consensus         4 ~~~~~~~~~~~q~e~l~~ql~~L~~a~se~~~~ie~L~~~~~----~~~~eiLVPLg~slYV~gki~d~~kVlVdIGTGy   79 (130)
T PRK01203          4 DVEAQLNYIESLISSVDSQIDSLNKTLSEVQQTISFLSDNEL----DNSKELLISIGSGIFADGNIKKDKDLIVPIGSGV   79 (130)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc----CCCCeEEEEccCCceEeEEecCCCeEEEEcCCCe
Confidence            456788899999999999999999999999999999888642    4568999999999999999999999999999999


Q ss_pred             eeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810          135 MLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQ  176 (203)
Q Consensus       135 mvEy~l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~E  176 (203)
                      +||.+.++++++|+++++.+++.+......+..|.+++..+-
T Consensus        80 ~VEK~~e~kie~L~~~ie~Le~~i~~K~~~l~~i~~~~~~l~  121 (130)
T PRK01203         80 YIAEERERTIERLKENLEDLKDSIQKLNDQRKTLVDQYNTVY  121 (130)
T ss_pred             EEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999887654

>KOG3048 consensus Molecular chaperone Prefoldin, subunit 5 [Posttranslational modification, protein turnover, chaperones]

Probab=98.80  E-value=4.6e-07  Score=74.04  Aligned_cols=99  Identities=13%  Similarity=0.213  Sum_probs=77.4

Q ss_pred             HHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCCeeEEEEcccceeeeEEeCCCCeEEEecccceeeeeCHHHHHHHHHH
Q 028810           70 LLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATVLLQK  149 (203)
Q Consensus        70 l~qq~~~L~~kIpdikktLe~V~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~tdkV~LwLGAnVmvEy~l~EA~~lL~~  149 (203)
                      ++..+..|..--.-...+++.|+.++.   ..++-+.++||+..+|+.+++.+.+++.+-+|-|-+||.+.++|+++.++
T Consensus        32 lq~Sl~~L~~aq~k~~~~~~aln~~~~---~~eGk~~LVPLTsSlYVPGkl~d~~k~lVDIGTGYyVEK~~e~akdyfkR  108 (153)
T KOG3048|consen   32 LQDSLNALKGAQTKYEESIAALNDVQA---ANEGKKLLVPLTSSLYVPGKLSDNSKFLVDIGTGYYVEKDAEDAKDYFKR  108 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccc---CCCCCeEEEecccceeccceeccccceeEeccCceEEeechHHHHHHHHH
Confidence            333333333333334445555556654   36789999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 028810          150 NLENAKASLEVLIADLQFLRDQ  171 (203)
Q Consensus       150 ~l~~a~~~l~~~~edL~fLrdQ  171 (203)
                      +++-+.+++++++.-+..=+..
T Consensus       109 Kve~l~kq~e~i~~i~~eK~~~  130 (153)
T KOG3048|consen  109 KVEYLTKQIEQIEGILKEKTRT  130 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999998888776654443

>KOG3047 consensus Predicted transcriptional regulator UXT [Transcription]

Probab=98.69  E-value=4e-07  Score=73.56  Aligned_cols=82  Identities=15%  Similarity=0.243  Sum_probs=76.2

Q ss_pred             CCeeEEEEcccceeeeEEeCCCCeEEEecccceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810          102 EALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVAR  181 (203)
Q Consensus       102 e~~et~f~L~d~~y~kA~I~~tdkV~LwLGAnVmvEy~l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~EVn~AR  181 (203)
                      .+++....||.++|+.-.||+|.+|++-||-+++||.++.||+++...+...++.-.+++..|--.|+..|+.+=.-|..
T Consensus        65 kel~~ktdLGcnfFmdi~VpDTk~i~VaL~~~fflElkLadAiKf~DRK~dlLkel~ekLqKdsmkiKa~ihMLLagl~e  144 (157)
T KOG3047|consen   65 KELEGKTDLGCNFFMDIEVPDTKHIVVALCDDFFLELKLADAIKFCDRKMDLLKELMEKLQKDSMKIKADIHMLLAGLDE  144 (157)
T ss_pred             hhhhccccccceeeEeeecCCcceEEEEeecceeeeehHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhh
Confidence            56888899999999999999999999999999999999999999999999999999999999999999999988766655


Q ss_pred             HH
Q 028810          182 VY  183 (203)
Q Consensus       182 vy  183 (203)
                      +|
T Consensus       145 lq  146 (157)
T KOG3047|consen  145 LQ  146 (157)
T ss_pred             hc
Confidence            54

>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea

Probab=98.56  E-value=6.5e-07  Score=68.55  Aligned_cols=102  Identities=18%  Similarity=0.209  Sum_probs=88.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCCeeEEEEcccceeeeEEeCCCCeEEEecccc
Q 028810           54 AFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGAN  133 (203)
Q Consensus        54 ~~lqe~~~KYk~me~~l~qq~~~L~~kIpdikktLe~V~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~tdkV~LwLGAn  133 (203)
                      +.+...|++|+..-..+.+++..|...+-+.+.+++.|..|.      ++-.+++.+|+                     
T Consensus         2 q~~~~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~------~d~~vy~~VG~---------------------   54 (105)
T cd00632           2 QEQLAQLQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKLA------DDAEVYKLVGN---------------------   54 (105)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC------CcchHHHHhhh---------------------
Confidence            456788999999999999999999999999999999888873      23333344443                     


Q ss_pred             eeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810          134 VMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARV  182 (203)
Q Consensus       134 VmvEy~l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~EVn~ARv  182 (203)
                      |+|+.|.+||...|+++++.++..++.+...+..|..++...+.++..+
T Consensus        55 vfv~~~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~  103 (105)
T cd00632          55 VLVKQEKEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQA  103 (105)
T ss_pred             HHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999887653

Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st

>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal

Probab=98.54  E-value=1.4e-06  Score=67.31  Aligned_cols=107  Identities=20%  Similarity=0.250  Sum_probs=94.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCCeeEEEEcccceeeeEEeCCCCeEEEec
Q 028810           51 SALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWL  130 (203)
Q Consensus        51 ~~l~~lqe~~~KYk~me~~l~qq~~~L~~kIpdikktLe~V~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~tdkV~LwL  130 (203)
                      +-++.+...|++|+..-..+.+++..|...+-+.+.+++.+..|.                          |..+||-.+
T Consensus         3 ~~~q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~--------------------------~d~~vyk~V   56 (110)
T TIGR02338         3 PQVQNQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLP--------------------------DDTPVYKSV   56 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--------------------------CcchhHHHh
Confidence            346778888899999899999999999999999999999888773                          234555556


Q ss_pred             ccceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810          131 GANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYN  184 (203)
Q Consensus       131 GAnVmvEy~l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~EVn~ARvyN  184 (203)
                      |. |+|+.+.+||+.-|+++++.++..++.+++.+.+|+.++..++-++..+++
T Consensus        57 G~-vlv~~~~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~~~  109 (110)
T TIGR02338        57 GN-LLVKTDKEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQEALA  109 (110)
T ss_pred             ch-hhheecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            64 999999999999999999999999999999999999999999999988764

Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.

>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea

Probab=98.06  E-value=0.00033  Score=52.37  Aligned_cols=98  Identities=18%  Similarity=0.301  Sum_probs=76.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCCeeEEEEcccceeeeEEeCCCCeEEEecccceee
Q 028810           57 QERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVML  136 (203)
Q Consensus        57 qe~~~KYk~me~~l~qq~~~L~~kIpdikktLe~V~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~tdkV~LwLGAnVmv  136 (203)
                      +..|+.++..-..+.+++..|...+-+++.+++.|..|.                          |..+||.-+| +++|
T Consensus         4 ~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~--------------------------~~~~~y~~vG-~~fv   56 (106)
T PF01920_consen    4 QNKFQELNQQLQQLEQQIQQLERQLRELELTLEELEKLD--------------------------DDRKVYKSVG-KMFV   56 (106)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS--------------------------TT-EEEEEET-TEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--------------------------CcchhHHHHh-HHHH
Confidence            344455555555666777788888888888877776662                          3345565664 6899


Q ss_pred             eeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810          137 EYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVAR  181 (203)
Q Consensus       137 Ey~l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~EVn~AR  181 (203)
                      +.|.+++...|+++++.++..++.+...+.++..++..++.++..
T Consensus        57 ~~~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~  101 (106)
T PF01920_consen   57 KQDKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYE  101 (106)
T ss_dssp             EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999998887653

Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.

>PRK09343 prefoldin subunit beta; Provisional

Probab=97.35  E-value=0.005  Score=48.63  Aligned_cols=109  Identities=17%  Similarity=0.250  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCCeeEEEEcccceeeeEEeCCCCeEEE
Q 028810           49 VNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCL  128 (203)
Q Consensus        49 ~e~~l~~lqe~~~KYk~me~~l~qq~~~L~~kIpdikktLe~V~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~tdkV~L  128 (203)
                      ..+-++..-..|++++..-..+.+++..|...+-+++.+++-+..|.                          +..+||-
T Consensus         5 ~~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~--------------------------~d~~VYk   58 (121)
T PRK09343          5 IPPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEKLP--------------------------DDTPIYK   58 (121)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--------------------------CcchhHH
Confidence            44556677777777888788889999999999999999988877773                          2334555


Q ss_pred             ecccceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810          129 WLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYN  184 (203)
Q Consensus       129 wLGAnVmvEy~l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~EVn~ARvyN  184 (203)
                      .+| .|+|-=+.+||+.-|+++++.++..++.++....+|+.++..++.++..+..
T Consensus        59 ~VG-~vlv~qd~~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~  113 (121)
T PRK09343         59 IVG-NLLVKVDKTKVEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEMLS  113 (121)
T ss_pred             Hhh-HHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555 4778889999999999999999999999999999999999999999987653

>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly

Probab=97.18  E-value=0.0032  Score=48.59  Aligned_cols=113  Identities=17%  Similarity=0.171  Sum_probs=82.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhh----------cCCCCeeEEEEcccceeeeEE
Q 028810           50 NSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKK----------EGGEALTADFEVSEGIFSRAR  119 (203)
Q Consensus        50 e~~l~~lqe~~~KYk~me~~l~qq~~~L~~kIpdikktLe~V~~L~~k~----------~~~e~~et~f~L~d~~y~kA~  119 (203)
                      ...++.++..++++...-..+.+++..++..+-.|+..-+......--.          .-.++-++.++||.|+|++..
T Consensus         5 ~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~l~~~g~~~~~~~~i~~~~~v~v~iG~~~~ve~~   84 (129)
T cd00890           5 AAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLKKAEEEKELLVPLGAGLFVKAEVKDDDKVLVDLGTGVYVEKS   84 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEecCCceEEEEEECCCCEEEEEecCCEEEEec
Confidence            3456778888888888777777777666655554444432222211000          001467789999999999999


Q ss_pred             eCCCCeEEEecccceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810          120 IEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTIT  175 (203)
Q Consensus       120 I~~tdkV~LwLGAnVmvEy~l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~  175 (203)
                      ++..             +-.+++.++.|+++++.+++.+..+...+..|+.+|...
T Consensus        85 ~~eA-------------~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~  127 (129)
T cd00890          85 LEEA-------------IEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQL  127 (129)
T ss_pred             HHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            8765             367999999999999999999999999999999998754

The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.

>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]

Probab=97.11  E-value=0.0058  Score=48.70  Aligned_cols=106  Identities=22%  Similarity=0.297  Sum_probs=82.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCCeeEEEEcccceeeeEEeCCCCeEEEecc
Q 028810           52 ALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLG  131 (203)
Q Consensus        52 ~l~~lqe~~~KYk~me~~l~qq~~~L~~kIpdikktLe~V~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~tdkV~LwLG  131 (203)
                      -++..-..|++++..-..+..++..++..+-|++++|+=+..|..      +                    ..||-.+|
T Consensus         7 ~~q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~e------D--------------------~~vYk~VG   60 (119)
T COG1382           7 EVQAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKLDE------D--------------------APVYKKVG   60 (119)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc------c--------------------cHHHHHhh
Confidence            345555566677777778889999999999999999998887742      1                    13444444


Q ss_pred             cceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810          132 ANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYN  184 (203)
Q Consensus       132 AnVmvEy~l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~EVn~ARvyN  184 (203)
                       |+.|.-+.++|.+=|+++++.++..++.++..-..+++++..+...+-..|+
T Consensus        61 -~llvk~~k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l~  112 (119)
T COG1382          61 -NLLVKVSKEEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKALG  112 (119)
T ss_pred             -hHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence             5666668899999999999999999999999999999998888888877665

>PRK03947 prefoldin subunit alpha; Reviewed

Probab=96.63  E-value=0.048  Score=43.31  Aligned_cols=110  Identities=15%  Similarity=0.199  Sum_probs=81.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCCeeEEEEcccceeeeEEeCCCCeEEEecccceeee
Q 028810           58 ERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLE  137 (203)
Q Consensus        58 e~~~KYk~me~~l~qq~~~L~~kIpdikktLe~V~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~tdkV~LwLGAnVmvE  137 (203)
                      ..++.+..+-..+.++...|..++..+...+.-++....-      ++         +.++. .....|++-||+++++.
T Consensus         6 ~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~------l~---------~l~~~-~~~~e~lvplg~~~yv~   69 (140)
T PRK03947          6 QELEELAAQLQALQAQIEALQQQLEELQASINELDTAKET------LE---------ELKSK-GEGKETLVPIGAGSFVK   69 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HH---------hhccc-CCCCeEEEEcCCCcEEE
Confidence            4455666666678899999999999999998877766532      22         12222 24689999999999999


Q ss_pred             eCHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810          138 YSCDEATV-------------LLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVY  183 (203)
Q Consensus       138 y~l~EA~~-------------lL~~~l~~a~~~l~~~~edL~fLrdQItt~EVn~ARvy  183 (203)
                      -.+.+..+             -+.+-++.+++.++.+...++.|.+++..+.-.+..++
T Consensus        70 ~~v~~~~kV~v~lG~g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~  128 (140)
T PRK03947         70 AKVKDKDKVIVSLGAGYSAEKDLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLA  128 (140)
T ss_pred             EEecCCCeEEEEcCCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99876655             45677777777777788888888888777777776654

>KOG4098 consensus Molecular chaperone Prefoldin, subunit 2 [Posttranslational modification, protein turnover, chaperones]

Probab=96.60  E-value=0.022  Score=46.22  Aligned_cols=97  Identities=14%  Similarity=0.198  Sum_probs=81.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCCeeEEEEcccceeeeEEeCCCCeEEEeccc
Q 028810           53 LAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGA  132 (203)
Q Consensus        53 l~~lqe~~~KYk~me~~l~qq~~~L~~kIpdikktLe~V~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~tdkV~LwLGA  132 (203)
                      -+.++..|+.|+..-..|.+.+..|+...-+.+--|++|+.|.                          |+-++|=.+ .
T Consensus        17 q~~v~a~yn~~r~el~~ia~ki~~LE~d~~EH~lVi~tlk~~d--------------------------p~RKCfRmI-g   69 (140)
T KOG4098|consen   17 QQAVVAKYNALRSELQQIASKITDLEMDLREHKLVIETLKDLD--------------------------PTRKCFRMI-G   69 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC--------------------------hhhHHHHHh-c
Confidence            3578889999999999999999999999999999988888773                          223333333 5


Q ss_pred             ceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810          133 NVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQ  176 (203)
Q Consensus       133 nVmvEy~l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~E  176 (203)
                      ||-|||++.|-+=.|+.|++.++..+..+.++|...-..++.-.
T Consensus        70 GvLVErTVkeVlP~L~~nke~i~~~i~~l~~qL~~k~kElnkfk  113 (140)
T KOG4098|consen   70 GVLVERTVKEVLPILQTNKENIEKVIKKLTDQLVQKGKELNKFK  113 (140)
T ss_pred             cchhhhhHHHHhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999988887777644

>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5

Probab=96.37  E-value=0.076  Score=41.28  Aligned_cols=105  Identities=16%  Similarity=0.149  Sum_probs=78.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCCeeEEEEcccceeeeEEeCCCCeEEEecccceeeeeCH
Q 028810           61 QQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSC  140 (203)
Q Consensus        61 ~KYk~me~~l~qq~~~L~~kIpdikktLe~V~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~tdkV~LwLGAnVmvEy~l  140 (203)
                      +.+..+-..+.+++..|..++.++..++..++....-      +.         +.+..  ....+++-||+++++.-.+
T Consensus         2 qql~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~------L~---------~l~~~--~~~~~lv~lg~~~~v~~~v   64 (126)
T TIGR00293         2 QQLAAELQILQQQVESLQAQIAALRALIAELETAIET------LE---------DLKGA--EGKETLVPVGAGSFVKAKV   64 (126)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HH---------hcccc--CCCeEEEEcCCCeEEEEEe
Confidence            3455666778899999999999999999988887642      21         11222  4578999999999999999


Q ss_pred             HHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810          141 DEAT-------------VLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARV  182 (203)
Q Consensus       141 ~EA~-------------~lL~~~l~~a~~~l~~~~edL~fLrdQItt~EVn~ARv  182 (203)
                      .+..             .-+.+-++-+++.++.+.+.++.|...+....-.+..+
T Consensus        65 ~~~~~v~v~iG~g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i  119 (126)
T TIGR00293        65 KDTDKVLVSIGSGYYVEKDAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQL  119 (126)
T ss_pred             CCCCEEEEEcCCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9886             45577777777777777777777777777777666664

This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.

>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly

Probab=95.57  E-value=0.3  Score=38.05  Aligned_cols=108  Identities=15%  Similarity=0.191  Sum_probs=79.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhc--------------CCCCeeEEEEccccee
Q 028810           50 NSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKE--------------GGEALTADFEVSEGIF  115 (203)
Q Consensus        50 e~~l~~lqe~~~KYk~me~~l~qq~~~L~~kIpdikktLe~V~~L~~k~~--------------~~e~~et~f~L~d~~y  115 (203)
                      ...++.++..++..+..-..+..++..+..-+    .+|+.+.......+              -.++-+..++||.|+|
T Consensus         5 ~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~----~~l~~l~~~~~~~~~lvplg~~~~~~~~i~~~~~v~v~iG~g~~   80 (129)
T cd00584           5 AAQLQVLQQEIEELQQELARLNEAIAEYEQAK----ETLETLKKADEGKETLVPLGAGVFVKAKVKDTDKVLVDLGTGYY   80 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhcCCCCCeEEEECCCCeEEeEEeCCCCEEEEEcCCCEE
Confidence            34566777777777777777777777765544    44444444221111              1245678999999999


Q ss_pred             eeEEeCCCCeEEEecccceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810          116 SRARIEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTI  174 (203)
Q Consensus       116 ~kA~I~~tdkV~LwLGAnVmvEy~l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt  174 (203)
                      +...++...             -.++.-++.|+++++.+++.+..+..++..+...+..
T Consensus        81 vE~~~~eA~-------------~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~  126 (129)
T cd00584          81 VEKDLEEAI-------------EFLDKKIEELTKQIEKLQKELAKLKDQINTLEAELQE  126 (129)
T ss_pred             EEecHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999987654             4689999999999999999999999999999988764

The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.

>KOG3130 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.57  E-value=0.56  Score=44.65  Aligned_cols=86  Identities=17%  Similarity=0.247  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHHhhhcCCCCeeEEEEcccceeeeEEeCCCCeEEEecccceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810           85 EKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIAD  164 (203)
Q Consensus        85 kktLe~V~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~tdkV~LwLGAnVmvEy~l~EA~~lL~~~l~~a~~~l~~~~ed  164 (203)
                      .+.++-+..|-++    =....+++||.-.|.-..+--|..|.+.+|+|-+-+-+.--|.++++-|++.+.++++.+...
T Consensus        30 e~~~erl~~~~kk----Ls~~Imvpig~~a~mpG~lVhTNevtv~~g~nyf~~CS~h~A~~I~~~R~~~~r~q~~~l~~~  105 (514)
T KOG3130|consen   30 EALRERLSTLPKK----LSYNIMVPIGPFAFMPGKLVHTNEVTVLLGDNYFAKCSAHQAVGIVEHRKEHVRKQIDDLKKV  105 (514)
T ss_pred             HHHHHHHHHhhhh----cccceeeecccccccccceeeechhhhhhccchHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444555543    358899999999999999999999999999999999999999999999999999999998776


Q ss_pred             HHHHHHHHHH
Q 028810          165 LQFLRDQVTI  174 (203)
Q Consensus       165 L~fLrdQItt  174 (203)
                      +.-+-.|+.-
T Consensus       106 ~~n~~~~vkf  115 (514)
T KOG3130|consen  106 MKNFESRVKF  115 (514)
T ss_pred             HHhhHHHhhh
Confidence            6666655543

>PRK01203 prefoldin subunit alpha; Provisional

Probab=89.77  E-value=2.4  Score=34.31  Aligned_cols=104  Identities=17%  Similarity=0.247  Sum_probs=74.1

Q ss_pred             HHHHHHHHHHhchhhHHHHHHHHHHHHhhhcC-CCCeeEEEEcccceeeeEEeCCCCeEEEecccceeeeeCHHHHHHH-
Q 028810           69 KLLAQQRDLQAKIPDIEKCLDIVATLQAKKEG-GEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATVL-  146 (203)
Q Consensus        69 ~l~qq~~~L~~kIpdikktLe~V~~L~~k~~~-~e~~et~f~L~d~~y~kA~I~~tdkV~LwLGAnVmvEy~l~EA~~l-  146 (203)
                      .+..+++.++++|..+..-++.++.-..+-.. -+.++.           ..-++...|.+=||++.+|-=.+.+..++ 
T Consensus         4 ~~~~~~~~~~~q~e~l~~ql~~L~~a~se~~~~ie~L~~-----------~~~~~~~eiLVPLg~slYV~gki~d~~kVl   72 (130)
T PRK01203          4 DVEAQLNYIESLISSVDSQIDSLNKTLSEVQQTISFLSD-----------NELDNSKELLISIGSGIFADGNIKKDKDLI   72 (130)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----------cccCCCCeEEEEccCCceEeEEecCCCeEE
Confidence            44556666666666666666666665544111 112222           11234678999999999998888777653 


Q ss_pred             ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810          147 ------------LQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVY  183 (203)
Q Consensus       147 ------------L~~~l~~a~~~l~~~~edL~fLrdQItt~EVn~ARvy  183 (203)
                                  +.++++.+++++++++.-+...+.++..++-+++.++
T Consensus        73 VdIGTGy~VEK~~e~kie~L~~~ie~Le~~i~~K~~~l~~i~~~~~~l~  121 (130)
T PRK01203         73 VPIGSGVYIAEERERTIERLKENLEDLKDSIQKLNDQRKTLVDQYNTVY  121 (130)
T ss_pred             EEcCCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                        5678999999999999999999999999999999887

>PRK14011 prefoldin subunit alpha; Provisional

Probab=82.31  E-value=11  Score=30.92  Aligned_cols=62  Identities=13%  Similarity=0.160  Sum_probs=46.7

Q ss_pred             CCCeEEEecccceeeeeCHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810          122 DTDSVCLWLGANVMLEYSCDEATVL-------------LQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVY  183 (203)
Q Consensus       122 ~tdkV~LwLGAnVmvEy~l~EA~~l-------------L~~~l~~a~~~l~~~~edL~fLrdQItt~EVn~ARvy  183 (203)
                      +...|.+-||++++|-=.+.+..++             +.+=+.-+++.++.++..++.|.+.|..+..++.+|=
T Consensus        48 ~~~eiLVPLg~s~yV~g~i~d~dkVlVdIGtGy~VEk~~~eA~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~  122 (144)
T PRK14011         48 TSEEILIPLGPGAFLKAKIVDPDKAILGVGSDIYLEKDVSEVIEDFKKSVEELDKTKKEGNKKIEELNKEITKLR  122 (144)
T ss_pred             CCCeEEEEcCCCcEEeEEecCCCeEEEEccCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4678999999999998888886553             3455666666777777777777777777777777764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	203
2zdi_C	151	Prefoldin subunit alpha; chaperone, cytoplasm; 3.0	2e-07
1fxk_C	133	Protein (prefoldin); archaeal protein, chaperone;	3e-06

>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii} Length = 151

 Score = 47.7 bits (113), Expect = 2e-07
 Identities = 21/118 (17%), Positives = 44/118 (37%), Gaps = 2/118 (1%)

Query: 56  LQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIF 115
           L    Q  +     L      L     +++   + +  L+  +E    +        G F
Sbjct: 14  LAYEYQVLQAQAQILAQNLELLNLAKAEVQTVRETLENLKKIEEEKPEILVPI--GAGSF 71

Query: 116 SRARIEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVT 173
            +  I D ++  + +G+   +E S DEA   L+K L+    +++     L  L  ++ 
Sbjct: 72  LKGVIVDKNNAIVSVGSGYAVERSIDEAISFLEKRLKEYDEAIKKTQGALAELEKRIG 129

>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 Length = 133

 Score = 44.2 bits (104), Expect = 3e-06
 Identities = 28/123 (22%), Positives = 62/123 (50%), Gaps = 4/123 (3%)

Query: 51  SALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEV 110
           +ALA +  +L  Y+     +  Q   ++A I ++E     ++ +Q  K+G E L     V
Sbjct: 1   AALAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQ-GKDGSETLV---PV 56

Query: 111 SEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRD 170
             G F +A ++DT  V + +GA V ++ + ++A   ++      +++L+ +  +L+ + D
Sbjct: 57  GAGSFIKAELKDTSEVIMSVGAGVAIKKNFEDAMESIKSQKNELESTLQKMGENLRAITD 116

Query: 171 QVT 173
            + 
Sbjct: 117 IMM 119

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	203
1fxk_C	133	Protein (prefoldin); archaeal protein, chaperone;	99.97
2zdi_C	151	Prefoldin subunit alpha; chaperone, cytoplasm; 3.0	99.96
2zqm_A	117	Prefoldin beta subunit 1; chaperone; HET: CIT; 1.9	98.71
1fxk_A	107	Prefoldin; archaeal protein, chaperone; 2.30A {Met	98.53

>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1

Probab=99.97  E-value=3.9e-30  Score=202.21  Aligned_cols=127  Identities=18%  Similarity=0.262  Sum_probs=122.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCCeeEEEEcccceeeeEEeCCCCeEEEeccc
Q 028810           53 LAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGA  132 (203)
Q Consensus        53 l~~lqe~~~KYk~me~~l~qq~~~L~~kIpdikktLe~V~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~tdkV~LwLGA  132 (203)
                      ++.|++++++|+++..++.+++..|..+||++++++++|+.|..    .++.+++||||+++|++|+|+++++||||||+
T Consensus         3 ~~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~l~~----~~~~~~lvplg~~~yv~a~i~~~~~V~v~lG~   78 (133)
T 1fxk_C            3 LAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQG----KDGSETLVPVGAGSFIKAELKDTSEVIMSVGA   78 (133)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----CTTCEEEEEEETTEEEEEECCSTTEEEEEEET
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----CCCCeEEEEcCCCcEEEEEECCCCEEEEEcCC
Confidence            67899999999999999999999999999999999999999975    35799999999999999999999999999999


Q ss_pred             ceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810          133 NVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVY  183 (203)
Q Consensus       133 nVmvEy~l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~EVn~ARvy  183 (203)
                      |||||||++||+++|++|++.++.+++.+.+++.++++||++++-.+..++
T Consensus        79 g~~vE~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~  129 (133)
T 1fxk_C           79 GVAIKKNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELL  129 (133)
T ss_dssp             TEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999998876

>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}

Probab=99.96  E-value=3.7e-29  Score=201.29  Aligned_cols=130  Identities=19%  Similarity=0.229  Sum_probs=124.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhchhhHHHHHHHHHHHHhhhcCCCCeeEEEEcccceeeeEEeCCCCeE
Q 028810           50 NSALAFLQERLQQYKLVEMKLLAQQRDL---QAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSV  126 (203)
Q Consensus        50 e~~l~~lqe~~~KYk~me~~l~qq~~~L---~~kIpdikktLe~V~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~tdkV  126 (203)
                      ++-++.|.+.+++|+++...+.+++..|   ..++||+++++++|+.|..     ++.+++||||+++|++|+|+++++|
T Consensus         8 ~~~l~ql~~~~qql~~~~~~l~~~~~~L~~a~~~~~e~~~~l~~l~~l~~-----~~~~ilvplg~~~yv~g~i~~~~~V   82 (151)
T 2zdi_C            8 NKELEKLAYEYQVLQAQAQILAQNLELLNLAKAEVQTVRETLENLKKIEE-----EKPEILVPIGAGSFLKGVIVDKNNA   82 (151)
T ss_dssp             TTHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC-----SSCEEEEECSSSCEEEEECSCTTEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----CCceEEEEcCCCeEEEEEECCCCEE
Confidence            4568999999999999999999999999   9999999999999998852     6799999999999999999999999


Q ss_pred             EEecccceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810          127 CLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYN  184 (203)
Q Consensus       127 ~LwLGAnVmvEy~l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~EVn~ARvyN  184 (203)
                      |||||+|||||||++||+++|++|++.++.+++.+.+++.+++++|+++++++..++.
T Consensus        83 ~v~lG~g~~vE~~~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~  140 (151)
T 2zdi_C           83 IVSVGSGYAVERSIDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQ  140 (151)
T ss_dssp             EEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred             EEEeCCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999873

>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A

Probab=98.71  E-value=5.6e-07  Score=67.98  Aligned_cols=106  Identities=16%  Similarity=0.277  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCCeeEEEEcccceeeeEEeCCCCeEEEec
Q 028810           51 SALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWL  130 (203)
Q Consensus        51 ~~l~~lqe~~~KYk~me~~l~qq~~~L~~kIpdikktLe~V~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~tdkV~LwL  130 (203)
                      +-++.+...|+.|+..-..+.+++..+...+-+++.+++.|..|.      ++-                    +||.-+
T Consensus         6 ~e~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~------~d~--------------------~vy~~i   59 (117)
T 2zqm_A            6 PQVQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLP------DDA--------------------VVYKTV   59 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC------TTC--------------------CEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC------CCc--------------------HhHHHh
Confidence            346677778888888888999999999999999999988887773      223                    355555


Q ss_pred             ccceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810          131 GANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVY  183 (203)
Q Consensus       131 GAnVmvEy~l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~EVn~ARvy  183 (203)
                      | +|+|+.+.++|...|.++++.++..++.+...+.+++.++..++.++...+
T Consensus        60 G-~vfv~~~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~  111 (117)
T 2zqm_A           60 G-TLIVKTTKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSAL  111 (117)
T ss_dssp             T-TEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             h-HHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5 999999999999999999999999999999999999999999999987765

>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B

Probab=98.53  E-value=5.3e-06  Score=61.68  Aligned_cols=102  Identities=17%  Similarity=0.222  Sum_probs=84.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCCeeEEEEcccceeeeEEeCCCCeEEEeccc
Q 028810           53 LAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGA  132 (203)
Q Consensus        53 l~~lqe~~~KYk~me~~l~qq~~~L~~kIpdikktLe~V~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~tdkV~LwLGA  132 (203)
                      ++.+...|++++..-..+.+++..++..+-+++.+++-|..|.      ++-.+++.+                    | 
T Consensus         3 ~Q~~i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l~------~d~~vy~~i--------------------G-   55 (107)
T 1fxk_A            3 VQHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAA------DDAEVYKSS--------------------G-   55 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC------TTCCEEEEE--------------------T-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC------CCchHHHHH--------------------h-
Confidence            4455566677777777888899999999999999988887772      223344444                    4 


Q ss_pred             ceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810          133 NVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVAR  181 (203)
Q Consensus       133 nVmvEy~l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~EVn~AR  181 (203)
                      +|+|+.|.++|...|.++++.++..++.+...+.+++.++..++.++..
T Consensus        56 ~vfv~~~~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~~  104 (107)
T 1fxk_A           56 NILIRVAKDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQE  104 (107)
T ss_dssp             TEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999999999999999999999999999988754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	203
d1fxkc_	133	a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Met	6e-16

>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 133

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin alpha subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 69.2 bits (169), Expect = 6e-16
 Identities = 25/132 (18%), Positives = 59/132 (44%), Gaps = 4/132 (3%)

Query: 51  SALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEV 110
           +ALA +  +L  Y+     +  Q   ++A I ++E     ++ +Q K            V
Sbjct: 1   AALAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQGKDGS----ETLVPV 56

Query: 111 SEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRD 170
             G F +A ++DT  V + +GA V ++ + ++A   ++      +++L+ +  +L+ + D
Sbjct: 57  GAGSFIKAELKDTSEVIMSVGAGVAIKKNFEDAMESIKSQKNELESTLQKMGENLRAITD 116

Query: 171 QVTITQVTVARV 182
            +         +
Sbjct: 117 IMMKLSPQAEEL 128

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	203
d1fxkc_	133	Prefoldin alpha subunit {Archaeon Methanobacterium	99.89
d1fxka_	107	Prefoldin beta subunit {Archaeon Methanobacterium	97.72
d1fxkc_	133	Prefoldin alpha subunit {Archaeon Methanobacterium	82.38

>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin alpha subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.89  E-value=3.3e-22  Score=154.68  Aligned_cols=127  Identities=18%  Similarity=0.262  Sum_probs=121.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCCeeEEEEcccceeeeEEeCCCCeEEEeccc
Q 028810           53 LAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGA  132 (203)
Q Consensus        53 l~~lqe~~~KYk~me~~l~qq~~~L~~kIpdikktLe~V~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~tdkV~LwLGA  132 (203)
                      |+.|..+++.|+..-..+++++..+...++|+..++++|+.|..    .++.++++|||+++|++|+|+++++|++|||+
T Consensus         3 L~eL~~~~~~l~~~l~~l~~~i~~l~~~~~e~~~~~~~L~~l~~----~~~~e~lvplg~~~~v~~~i~~~~~vlV~lG~   78 (133)
T d1fxkc_           3 LAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQG----KDGSETLVPVGAGSFIKAELKDTSEVIMSVGA   78 (133)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----CTTCEEEEEEETTEEEEEECCSTTEEEEEEET
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----CCCCeEEEEcCCceEEEEEecCCCceEEEecC
Confidence            67888999999999999999999999999999999999999974    35678999999999999999999999999999


Q ss_pred             ceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810          133 NVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVY  183 (203)
Q Consensus       133 nVmvEy~l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~EVn~ARvy  183 (203)
                      |++||+++++|+++|++|++.+++.++.+.+++..++++|+.++..+.++.
T Consensus        79 g~~vE~~~~eA~~~l~~ri~~l~~~~~~l~~~~~~~~~~i~~l~~~~~~l~  129 (133)
T d1fxkc_          79 GVAIKKNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELL  129 (133)
T ss_dssp             TEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CeeeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999998864

>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin beta subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.72  E-value=0.00093  Score=48.37  Aligned_cols=96  Identities=20%  Similarity=0.262  Sum_probs=77.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCCeeEEEEcccceeeeEEeCCCCeEEEecccceeeee
Q 028810           59 RLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEY  138 (203)
Q Consensus        59 ~~~KYk~me~~l~qq~~~L~~kIpdikktLe~V~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~tdkV~LwLGAnVmvEy  138 (203)
                      .|+.++..-..+.+++..|...+-+.+.+|+.|..+.                          |..+||=-+| +|+|+-
T Consensus         9 ~~q~lq~el~~~~~q~~~le~q~~E~~~vl~eL~~l~--------------------------~d~~vyk~vG-~vLv~~   61 (107)
T d1fxka_           9 QFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAA--------------------------DDAEVYKSSG-NILIRV   61 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC--------------------------TTCCEEEEET-TEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--------------------------cccHHHHHhc-chhhcC
Confidence            3444444455667899999999999999988877652                          3344555555 799999


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810          139 SCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVAR  181 (203)
Q Consensus       139 ~l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~EVn~AR  181 (203)
                      +.+|+..-|.++++.++..++.+...+..+++++.....++..
T Consensus        62 ~~~e~~~~l~~~~e~l~~~i~~l~~q~~~l~~~l~~~~~~l~~  104 (107)
T d1fxka_          62 AKDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQE  104 (107)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999988887653

>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin alpha subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=82.38  E-value=4.5  Score=28.49  Aligned_cols=58  Identities=17%  Similarity=0.158  Sum_probs=28.3

Q ss_pred             eeEEEEcccceeeeEEeCCCCeEEEecccceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810          104 LTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTI  174 (203)
Q Consensus       104 ~et~f~L~d~~y~kA~I~~tdkV~LwLGAnVmvEy~l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt  174 (203)
                      -+..++||.|+|++-.++..-            +| ++.=++.|+++++.+.+.+..+...+..+..++..
T Consensus        70 ~~vlV~lG~g~~vE~~~~eA~------------~~-l~~ri~~l~~~~~~l~~~~~~~~~~i~~l~~~~~~  127 (133)
T d1fxkc_          70 SEVIMSVGAGVAIKKNFEDAM------------ES-IKSQKNELESTLQKMGENLRAITDIMMKLSPQAEE  127 (133)
T ss_dssp             TEEEEEEETTEEEEEEHHHHH------------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CceEEEecCCeeeeecHHHHH------------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445555555555555443321            11 33334445555555555555555555555554443