Citrus Sinensis ID: 028860

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200--
Protein Sequence
MENSGWDYGVPIINIVGENFCVPYTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGIPLLTMRQKSFKWRKEWTVHPGESSEDNNDILFRVEQPSPLHIKTKLEVFLPNNNIIGKRAPDFYVTGSFTSLSFKVYRGKTVLCQVANHNYTWGSICKGKENFKVRVHPEVDYSFITALLVILEENET
Secondary Structure (PSIPRED)
cccccccccccEEEEEcccccccccEEEEEEEEEEEEEcccEEEEcccccEEEEEEccccccccEEEEEccccccEEEEEEccccccccEEEEccccccccccEEEEEEcccccccccEEEEEcccccccccccccEEEEEEcccccEEEEEccEEEEEEEEEEccccEEEEEccEEEEEEcccccHHHHHHHHHEEccccc
Secondary Structure Prediction (SSPRO)
cccccccccccEEEEEccHHcccccEEEEEEEEEEEEccccEEEEEccccEEEEEcccccccccEEEEEcccccEEEEEEcccccccccEEEEEccccccccccEEEEEEcccEEcccEEEEEEEcccccccccccEEEEEccccccEEEEcccccEEEEEEEEccccEEEEcccEEEEEEcccccHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mensgwdygvpiinivgenfcvPYTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDGSLWKFQKKrvmrdpagiplltmrqksfkwrkewtvhpgessednndilfrveqpsplhiktklevflpnnniigkrapdfyvtgsftslsfkvyRGKTVLCQVanhnytwgsickgkenfkvrvhpevdYSFITALLVILEENET
Flexible Loop (DISEMBL)
mensgwdygVPIINIVGENFCVPYTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDGSLWKFQKKrvmrdpagiplltmrqksfkwrkewtvhpgessednndiLFRVEQPSPLHIKTKLEVFLPNNNIIGKRAPDFYVTGSFTSLSFKVYRGKTVLCQVANHNYTWGSICKGKENFKVRVHPEVDYSFITALLVILEENET
Low Complexity Region (SEG)
MENSGWDYGVPIINIVGENFCVPYTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGIPLLTMRQKSFKWRKEWTVHPGESSEDNNDILFRVEQPSPLHIKTKLEVFLPNNNIIGKRAPDFYVTGSFTSLSFKVYRGKTVLCQVANHNYTWGSICKGKENFKVRVHPEVDYSFITALLVILEENET
Disordered region (IsUnstruct)
****GWDYGVPIINIVGENFCVPYTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGIPLLTMRQKSFKWRKEWTVH*********DILFRVEQPSPLHIKTKLEVFLPNNNIIGKRAPDFYVTGSFTSLSFKVYRGKTVLCQVANHNYTWGSICKGKENFKVRVHPEVDYSFITALLVIL*****
Disordered Region (DISOPRED)
**********PIINIVGENFCVPYTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGIPLLTMRQKSFKWRKEWTVHPGESSEDNNDILFRVEQPSPLHIKTKLEVFLPNNNIIGKRAPDFYVTGSFTSLSFKVYRGKTVLCQVANHNYTWGSICKGKENFKVRVHPEVDYSFITALLVILEENE*
Disordered Region (DISEMBL)
MENSGWDYGVPIINIVGENFCVPYTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGIPLLTMRQKSFKWRKEWTVHPGESSEDNNDILFRVEQPSPLHIKTKLEVFLPNNNIIGKRAPDFYVTGSFTSLSFKVYRGKTVLCQVANHNYTWGSICKGKENFKVRVHPEVDYSFITALLVILEENET
Disordered Region (DISPRO)
****GWDYGVPIINIVGENFCVPYTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGIPLLTMRQKSFKWRKEWTVHPGESSEDNNDILFRVEQPSPLHIKTKLEVFLPNNNIIGKRAPDFYVTGSFTSLSFKVYRGKTVLCQVANHNYTWGSICKGKENFKVRVHPEVDYSFITALLVILEENET
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MENSGWDYGVPIINIVGENFCVPYTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGIPLLTMRQKSFKWRKEWTVHPGESSEDNNDILFRVEQPSPLHIKTKLEVFLPNNNIIGKRAPDFYVTGSFTSLSFKVYRGKTVLCQVANHNYTWGSICKGKENFKVRVHPEVDYSFITALLVILEENET
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	202	2.2.26 [Sep-21-2011]
Q9LYM3	204	Protein LURP-one-related	yes	no	0.950	0.941	0.507	1e-55
B3H5L1	197	Protein LURP-one-related	no	no	0.920	0.944	0.438	1e-41
Q9LZX1	217	Protein LURP-one-related	no	no	0.900	0.838	0.349	2e-28
Q9SF24	194	Protein LURP-one-related	no	no	0.900	0.938	0.358	4e-28
Q9ZQR8	207	Protein LURP1 OS=Arabidop	no	no	0.905	0.884	0.317	1e-20
Q9LQ36	224	Protein LURP-one-related	no	no	0.896	0.808	0.310	3e-20
Q9LSQ1	185	Protein LURP-one-related	no	no	0.821	0.897	0.278	1e-14
Q9ZVI6	196	Protein LURP-one-related	no	no	0.722	0.744	0.230	6e-06
Q9LVZ8	220	Protein LURP-one-related	no	no	0.747	0.686	0.223	0.0005

>sp|Q9LYM3|LOR14_ARATH Protein LURP-one-related 14 OS=Arabidopsis thaliana GN=At3g56180 PE=2 SV=2

 Score =  215 bits (548), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 100/197 (50%), Positives = 140/197 (71%), Gaps = 5/197 (2%)

Query: 6   WDYGVPIINIVGENFCVPYTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDGSLWKFQKK 65
           W  G P I++V + FC PY M++LVK+++Q  S  +Y+VFD SGNLLLQ+DG  W F +K
Sbjct: 9   WQVGDPAISVVSDQFCNPYPMDLLVKRKVQNFSKDYYEVFDPSGNLLLQIDGQAWGFNRK 68

Query: 66  RVMRDPAGIPLLTMRQKSFKWRKEWTVHPGESSEDNNDILFRVEQPSPLHIKTKLEVFLP 125
           RVMRDPAG  +L+MRQK    + +W VH GES E   D+LF V+Q   + +KT ++VFLP
Sbjct: 69  RVMRDPAGFTILSMRQKGLALKNKWEVHGGESKE-REDLLFTVQQSQAVSLKTSVDVFLP 127

Query: 126 -NNNIIGKRAPDFYVTGSFTSLSFKVYRGKTVLCQVANHNYTWGSICKGKENFKVRVHPE 184
            NNN+      DF+ +G ++++SFKV++   ++  V    +TWGS CKGK NFKVRV+PE
Sbjct: 128 ENNNVKKTNTCDFHASGGYSNISFKVFKADALIAGVG---FTWGSFCKGKYNFKVRVNPE 184

Query: 185 VDYSFITALLVILEENE 201
           VDY+FI ALLV++++NE
Sbjct: 185 VDYAFIIALLVMVDDNE 201

Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors.
Arabidopsis thaliana (taxid: 3702)

>sp|B3H5L1|LOR9_ARATH Protein LURP-one-related 9 OS=Arabidopsis thaliana GN=At3g10986 PE=3 SV=1

 Score =  169 bits (428), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 85/194 (43%), Positives = 127/194 (65%), Gaps = 8/194 (4%)

Query: 12  IINIVGENFCVPYTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDGSLWKFQKKRVMRDP 71
           ++++VGE FC PYT E++V++R + +    YDVFD+S NL+  VDG +W  ++KRV+RD 
Sbjct: 1   MVSVVGEMFCNPYTTELVVRRRRESLKRERYDVFDLSNNLIFTVDGGIWNIRRKRVLRDA 60

Query: 72  AGIPLLTMRQKSF-KWRKEWTVHPGESSEDNNDILFRVEQPSPLHIKTKLEVFLP---NN 127
           AGIPLL+MR K     R  W V+ G+S+E +N +LF   +P+ L  KT L+V LP   ++
Sbjct: 61  AGIPLLSMRTKGLVPMRYNWEVYKGDSTESDN-LLFSAREPNLLSFKTSLDVTLPPDQSS 119

Query: 128 NIIGKRAPDFYVTGSFTSLSFKVYR--GKTVLCQVANHNYTWGSICKGKENFKVRVHPEV 185
             I    PDF   G +   SFK++     T+L +V  H++TWG + KG  +FKVRV+P V
Sbjct: 120 TDISSVEPDFQTFGRYIGSSFKLFEPIHNTLLAEVV-HDFTWGGLIKGSYSFKVRVNPYV 178

Query: 186 DYSFITALLVILEE 199
           D++F+ ALLVI ++
Sbjct: 179 DFAFVVALLVITDD 192

Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LZX1|LOR15_ARATH Protein LURP-one-related 15 OS=Arabidopsis thaliana GN=At5g01750 PE=1 SV=1

 Score =  125 bits (314), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 65/186 (34%), Positives = 114/186 (61%), Gaps = 4/186 (2%)

Query: 15  IVGENFCVPYTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGI 74
           +V   +C PY ++M + +++  +++ ++ + D++GNLL +V   ++    KRV+ D +G 
Sbjct: 27  VVDPKYCAPYPIDMAIVRKMMSLTDGNFVITDVNGNLLFKVKEPVFGLHDKRVLLDGSGT 86

Query: 75  PLLTMRQKSFKWRKEWTVHPGESSEDNNDILFRVEQPSPLHIKTKLEVFLPNNNIIGKRA 134
           P++T+R+K       W V  G S+ D  D+L+ V++ S L +KTKL+VFL +N    ++ 
Sbjct: 87  PVVTLREKMVSMHDRWQVFRGGST-DQRDLLYTVKRSSMLQLKTKLDVFLGHNK--DEKR 143

Query: 135 PDFYVTGSFTSLSFKVYRGKT-VLCQVANHNYTWGSICKGKENFKVRVHPEVDYSFITAL 193
            DF V GS+   S  VY G++  +    +  +T  S+  GK+NF V V+P VDY+FI +L
Sbjct: 144 CDFRVKGSWLERSCVVYAGESDAIVAQMHRKHTVQSVFLGKDNFSVTVYPNVDYAFIASL 203

Query: 194 LVILEE 199
           +VIL++
Sbjct: 204 VVILDD 209

Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SF24|LOR10_ARATH Protein LURP-one-related 10 OS=Arabidopsis thaliana GN=At3g11740 PE=2 SV=2

 Score =  124 bits (312), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 67/187 (35%), Positives = 112/187 (59%), Gaps = 5/187 (2%)

Query: 15  IVGENFCVPYTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGI 74
           IV  NFC PY +E+ + +++  +++ ++ V D++GNLL +V   L+    KR++ D    
Sbjct: 3   IVSPNFCAPYPIELGIVRKVMTLTDGNFAVTDVNGNLLFKVKEPLFSISDKRILLDAYDT 62

Query: 75  PLLTMRQKSFKWRKEWTVHPGESSEDNNDILFRVEQPSPLHI-KTKLEVFLPNNNIIGKR 133
           P+LT+R+        W V+ G+S+ D +D+L+ +++ S + I K KL++FL +N     +
Sbjct: 63  PILTLRENKVSLHDRWLVYRGKST-DQSDLLYTLKRSSMIQIMKPKLDIFLAHNK--EMK 119

Query: 134 APDFYVTGSFTSLSFKVYRGKTVLCQVANH-NYTWGSICKGKENFKVRVHPEVDYSFITA 192
             DF+V GS+   S  VY GK+       H  +T  SI  GK NF V V+P VD++FI +
Sbjct: 120 ICDFHVKGSWIDRSCVVYAGKSDAIVAQMHKKHTAQSILIGKSNFSVTVYPNVDFAFIVS 179

Query: 193 LLVILEE 199
           L+VIL++
Sbjct: 180 LIVILDD 186

Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZQR8|LURP1_ARATH Protein LURP1 OS=Arabidopsis thaliana GN=LURP1 PE=2 SV=1

 Score = 99.8 bits (247), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 60/189 (31%), Positives = 101/189 (53%), Gaps = 6/189 (3%)

Query: 15  IVGENFCVPYTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGI 74
           IVG  +C P  + + + +++  +++ ++ +    G LL +V   L+    KR++ D +G 
Sbjct: 7   IVGSKYCSPNPVGLAIVRKVMKITDGNFVITSADGKLLFKVKDPLFSLHGKRILLDCSGA 66

Query: 75  PLLTMRQKSFKWRKEWTVHPGESSEDNNDILFRVEQPSPLHIKTKLEVFLPNNNIIGKRA 134
            +LT+R K       W V  G S+E+   +L+ V++ S + +  KLEVFL NN  + ++ 
Sbjct: 67  KVLTLRGKMMTMHDRWQVFRGGSTEEGA-LLYTVKRSSMIQLAPKLEVFLANN--VEEKI 123

Query: 135 PDFYVTGSFTSLSFKVYRG--KTVLCQVANHNYTWGSICKGKENFKVRVHPEVDYSFITA 192
            DF V G++   S  VY G   T++  +       G    GK++F V V   VDY+FI +
Sbjct: 124 CDFKVKGAWLDDSCVVYAGDSDTIIAHMCGKQTMRGFFF-GKDHFSVTVDKNVDYAFIAS 182

Query: 193 LLVILEENE 201
           L+VIL E E
Sbjct: 183 LIVILVEIE 191

Involved in basal defense against virulent oomycetes. Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LQ36|LOR1_ARATH Protein LURP-one-related 1 OS=Arabidopsis thaliana GN=At1g33840 PE=2 SV=2

 Score = 98.2 bits (243), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 58/187 (31%), Positives = 107/187 (57%), Gaps = 6/187 (3%)

Query: 15  IVGENFCVPYTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGI 74
           IV   +C  + +++ + +++  +++ ++ + +  GNLL +V    +   +KR++ D  G 
Sbjct: 27  IVDPKYCSLHPVDLAIVRKVLKITDGNFVITNAEGNLLFKVKDPFFSLHEKRILMDGFGT 86

Query: 75  PLLTMRQKSFKWRKEWTVHPGESSEDNNDILFRVEQPSPLHIKTKLEVFLPNNNIIGKRA 134
            +LT++ K       W V  G S+E+  D+L+ V++ + + I TKL+VFL +N  I ++ 
Sbjct: 87  KVLTLKGKIMTMHDRWLVFRGGSTEE-VDLLYTVKRSNMVQITTKLDVFLADN--IEQKK 143

Query: 135 PDFYVTGSFTSLSFKVYRGKT--VLCQVANHNYTWGSICKGKENFKVRVHPEVDYSFITA 192
            D+ + G +   S  VY G +  +L Q+     T  S+  GK+NF + V+P VDY+FI +
Sbjct: 144 CDYRLEGVWLETSCFVYAGDSDIILAQMREKK-TMQSVLFGKDNFCLTVNPNVDYAFIAS 202

Query: 193 LLVILEE 199
           L+VIL E
Sbjct: 203 LIVILVE 209

Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LSQ1|LOR13_ARATH Protein LURP-one-related 13 OS=Arabidopsis thaliana GN=At3g16900 PE=3 SV=1

 Score = 79.7 bits (195), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 91/187 (48%), Gaps = 21/187 (11%)

Query: 12  IINIVGENFCVPYTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDGSLWKFQKKRVMRDP 71
           ++ +VG  F  P  +++     I G +     V D +GN + +V   L+    KR++ DP
Sbjct: 12  MLPLVGSEFVRPQPLDLT----ITGDT-----VKDATGNKVFKVKTPLFGLHNKRILVDP 62

Query: 72  AGIPLLTMRQKSFKWRKEWTVHPGESSEDNNDILFRVEQPSPLHIKTKLEVFLPNNNIIG 131
              P++TM+ K       W V+ G    D +D +F V++ S + +KT++EVFL +N    
Sbjct: 63  NDSPIVTMKMKVTSKHDRWQVYRG---SDLDDKIFTVKRSSTVQLKTRVEVFLKHNQ-TR 118

Query: 132 KRAPDFYVTGSFTSLSFKVYRGKTVLCQVANHNYTWGSICKGKENFKVRVHPEVDYSFIT 191
           + + DF + G F   +  +Y        VA+       + +G E     ++P VDY+FI 
Sbjct: 119 ESSCDFTIKGRFMKRACTIY--------VADSTKIIAQVYEGHERLVATIYPNVDYAFIV 170

Query: 192 ALLVILE 198
            L+ I +
Sbjct: 171 TLIFIFD 177

Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZVI6|LOR8_ARATH Protein LURP-one-related 8 OS=Arabidopsis thaliana GN=At2g38640 PE=2 SV=1

 Score = 50.8 bits (120), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 72/165 (43%), Gaps = 19/165 (11%)

Query: 42  YDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGIPLLTMRQKSFKWRKEWTVHPGESSEDN 101
           + V++ +G L+ +VD  +   +   V+ D +G PLL++R+K       W V+ GE+  D 
Sbjct: 39  FTVYNANGELVFRVDNYMNCPRDNIVLMDASGFPLLSIRRKKLSLGDCWMVYDGETERD- 97

Query: 102 NDILFRVEQPSPLHIKTKLEVFLPNNN----IIGKRAPDFYVTGSFTSLSFKVY---RGK 154
                      P+    K    + N      +  K+   + + GS+   S K+    R K
Sbjct: 98  -----------PIFTARKNVSIISNRKSLAWVSAKKTVLYEIEGSYGQRSCKILDERRNK 146

Query: 155 TVLCQVANHNYTWGSICKGKENFKVRVHPEVDYSFITALLVILEE 199
               ++       G +  GK+ +K+ V  E++     AL +IL++
Sbjct: 147 KKTAEIKRKETVIGGVAFGKDVYKLIVESEMEPRVAMALTIILDQ 191

Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LVZ8|LOR12_ARATH Protein LURP-one-related 12 OS=Arabidopsis thaliana GN=At3g15810 PE=2 SV=1

 Score = 44.7 bits (104), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/161 (22%), Positives = 74/161 (45%), Gaps = 10/161 (6%)

Query: 42  YDVFDISGNLLLQVD--GSLWKFQKKRVMRDPAGIPLLTMRQKSFKWRKEWTVHPGESSE 99
           +  +D  G+++ +VD  G   +   + V+ D  G  LLT+++K     + W    GE SE
Sbjct: 47  FAAYDCRGDIIFRVDSYGPDTRDNDEIVLMDATGKCLLTVKRKRPTLHQRWEGFLGERSE 106

Query: 100 DNNDILFRVEQPSPLHIKTKLEVFLPNNNIIGKRAPDFYVTGSFTSLSFKVY-RGKTVLC 158
               I F V + S +  +  +EV + +         ++ + G F+  S  +Y   K  + 
Sbjct: 107 GQKPI-FSVRRSSIIG-RCTMEVEVYDGT-----GEEYIIDGDFSQRSCLIYDTKKCTVA 159

Query: 159 QVANHNYTWGSICKGKENFKVRVHPEVDYSFITALLVILEE 199
           ++        ++  G++ F + + P  D +F   L+V+L++
Sbjct: 160 EIKRKVDASTNVMLGRDVFTLEIKPGFDGAFAMGLVVVLDQ 200

Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	202
224098750	200	predicted protein [Populus trichocarpa]	0.985	0.995	0.524	1e-60
224112419	195	predicted protein [Populus trichocarpa]	0.945	0.979	0.569	1e-58
255559593	198	conserved hypothetical protein [Ricinus	0.975	0.994	0.539	6e-58
7572916	208	putative protein [Arabidopsis thaliana]	0.965	0.937	0.510	7e-55
30694393	204	uncharacterized protein [Arabidopsis tha	0.950	0.941	0.507	7e-54
297816940	204	hypothetical protein ARALYDRAFT_486059 [	0.950	0.941	0.502	2e-53
186509973	197	LURP-one-like protein 9 [Arabidopsis tha	0.920	0.944	0.438	5e-40
297833890	197	hypothetical protein ARALYDRAFT_317898 [	0.925	0.949	0.430	2e-39
356554644	189	PREDICTED: protein LURP-one-related 14-l	0.920	0.984	0.445	3e-35
357506497	215	hypothetical protein MTR_7g072140 [Medic	0.896	0.841	0.385	6e-30

>gi|224098750|ref|XP_002311255.1| predicted protein [Populus trichocarpa] gi|222851075|gb|EEE88622.1| predicted protein [Populus trichocarpa]

 Score =  238 bits (606), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 106/202 (52%), Positives = 153/202 (75%), Gaps = 3/202 (1%)

Query: 1   MENSGWDYGVPIINIVGENFCVPYTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDGSLW 60
           M+   W YGVP I+++GE++C PY +E++VKK+I  +S++ + VFD+SGN LL+VDG +W
Sbjct: 1   MKVPEWAYGVPPISVIGESYCTPYPLELIVKKKINKLSSSQFQVFDLSGNFLLKVDGGVW 60

Query: 61  KFQKKRVMRDPAGIPLLTMRQKSFKWRKEWTVHPGESSEDNNDILFRVEQPSPLHIKTKL 120
            F+ KRV+ DPAG P+LT+R K+  +R +W  H GES+ D ++ILF V+Q  PL IK ++
Sbjct: 61  NFKLKRVLLDPAGFPILTLRGKALAFRHKWKAHAGESTHDTSNILFSVKQSHPLQIKKQI 120

Query: 121 EVFLPNNNIIGKRAPDFYVTGSFTSLSFKVYRGKTVLCQVANHNYTWGSICKGKENFKVR 180
            +FL NN    K+ PD ++TG++TSLSFKVY G+ ++ +V  HN+T  S CKGKE +KV+
Sbjct: 121 NIFLANN--FKKKEPDIHITGAYTSLSFKVYEGRRLIAEV-KHNFTLESFCKGKEKYKVK 177

Query: 181 VHPEVDYSFITALLVILEENET 202
           V+PEVDY+FI ALLVIL+EN+T
Sbjct: 178 VYPEVDYAFIVALLVILDENDT 199

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112419|ref|XP_002316183.1| predicted protein [Populus trichocarpa] gi|222865223|gb|EEF02354.1| predicted protein [Populus trichocarpa]

 Score =  231 bits (588), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 111/195 (56%), Positives = 153/195 (78%), Gaps = 4/195 (2%)

Query: 8   YGVPIINIVGENFCVPYTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDGSLWKFQKKRV 67
           YGVP +++VGEN+C PY +E++VKK+I+ +SNA ++VFD+SGNLLLQVDG +W FQ KRV
Sbjct: 4   YGVPPVSVVGENYCAPYPLELIVKKKIKKLSNAQFEVFDLSGNLLLQVDGGVWNFQLKRV 63

Query: 68  MRDPAGIPLLTMRQKSFKWRKEWTVHPGESSEDNNDILFRVEQPSPLHIKTKLEVFLPNN 127
           +RDPAG P+LT+R K      +W  H GES++D+N +LF V+Q  PL IK  + VFL NN
Sbjct: 64  LRDPAGFPILTIRGKVLTLWHKWKAHAGESTDDSN-VLFTVKQSHPLQIKKAINVFLTNN 122

Query: 128 NIIGKRAPDFYVTGSFTSLSFKVYRGKTVLCQVANHNYTWGSICKGKENFKVRVHPEVDY 187
           +   K+ PDF+++GS+TSLSFKVY G+ ++ +V  HN+T  S CKGKE +KV+V+PEVDY
Sbjct: 123 S--KKKEPDFHISGSYTSLSFKVYEGRRLIAEV-KHNFTLESFCKGKERYKVKVYPEVDY 179

Query: 188 SFITALLVILEENET 202
           +F+ ALLVIL+EN+T
Sbjct: 180 AFVVALLVILDENDT 194

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255559593|ref|XP_002520816.1| conserved hypothetical protein [Ricinus communis] gi|223539947|gb|EEF41525.1| conserved hypothetical protein [Ricinus communis]

 Score =  229 bits (584), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 109/202 (53%), Positives = 148/202 (73%), Gaps = 5/202 (2%)

Query: 1   MENSGWDYGVPIINIVGENFCVPYTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDGSLW 60
           ME   W +GVP ++++G+ +C PY ME++VKK+I+ MSNA ++VFD+SGNLLLQVDG +W
Sbjct: 1   MEVPTWTFGVPSVSVIGDGYCFPYPMELIVKKKIKKMSNAQFEVFDLSGNLLLQVDGGVW 60

Query: 61  KFQKKRVMRDPAGIPLLTMRQKSFKWRKEWTVHPGESSEDNNDILFRVEQPSPLHIKTKL 120
            F  KR++RDPAG P+LT+R K+     +W  H GE+ ++NN ILF V Q  PL IK  L
Sbjct: 61  SFNMKRIVRDPAGFPILTLRGKALTLWHKWKAHEGENKDENN-ILFSVRQSHPLQIKKDL 119

Query: 121 EVFLPNNNIIGKRAPDFYVTGSFTSLSFKVYRGKTVLCQVANHNYTWGSICKGKENFKVR 180
            VFL N     ++ PDF+VTGS+TSLSFKVY+G  +L +V  H +T  S  KGKE + V+
Sbjct: 120 HVFLAN---FKQKDPDFHVTGSYTSLSFKVYKGHRLLAEV-KHTFTLESFYKGKEKYSVK 175

Query: 181 VHPEVDYSFITALLVILEENET 202
           V+PEVDY+FI ALLVI++EN+T
Sbjct: 176 VYPEVDYAFIVALLVIIDENDT 197

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7572916|emb|CAB87417.1| putative protein [Arabidopsis thaliana]

 Score =  219 bits (557), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 101/198 (51%), Positives = 141/198 (71%), Gaps = 3/198 (1%)

Query: 6   WDYGVPIINIVGENFCVPYTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDGSLWKFQKK 65
           W  G P I++V + FC PY M++LVK+++Q  S  +Y+VFD SGNLLLQ+DG  W F +K
Sbjct: 9   WQVGDPAISVVSDQFCNPYPMDLLVKRKVQNFSKDYYEVFDPSGNLLLQIDGQAWGFNRK 68

Query: 66  RVMRDPAGIPLLTMRQKSFKWRKEWTVHPGESSEDNNDILFRVEQPSPLHIKTKLEVFLP 125
           RVMRDPAG  +L+MRQK    + +W VH GES E   D+LF V+Q   + +KT ++VFLP
Sbjct: 69  RVMRDPAGFTILSMRQKGLALKNKWEVHGGESKE-REDLLFTVQQSQAVSLKTSVDVFLP 127

Query: 126 -NNNIIGKRAPDFYVTGSFTSLSFKVYRGKTVLCQVA-NHNYTWGSICKGKENFKVRVHP 183
            NNN+      DF+ +G ++++SFKV++   ++  V   H +TWGS CKGK NFKVRV+P
Sbjct: 128 ENNNVKKTNTCDFHASGGYSNISFKVFKADALIAGVGVTHKFTWGSFCKGKYNFKVRVNP 187

Query: 184 EVDYSFITALLVILEENE 201
           EVDY+FI ALLV++++NE
Sbjct: 188 EVDYAFIIALLVMVDDNE 205

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30694393|ref|NP_191177.2| uncharacterized protein [Arabidopsis thaliana] gi|308197098|sp|Q9LYM3.2|LOR14_ARATH RecName: Full=Protein LURP-one-related 14 gi|332645969|gb|AEE79490.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  215 bits (548), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 100/197 (50%), Positives = 140/197 (71%), Gaps = 5/197 (2%)

Query: 6   WDYGVPIINIVGENFCVPYTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDGSLWKFQKK 65
           W  G P I++V + FC PY M++LVK+++Q  S  +Y+VFD SGNLLLQ+DG  W F +K
Sbjct: 9   WQVGDPAISVVSDQFCNPYPMDLLVKRKVQNFSKDYYEVFDPSGNLLLQIDGQAWGFNRK 68

Query: 66  RVMRDPAGIPLLTMRQKSFKWRKEWTVHPGESSEDNNDILFRVEQPSPLHIKTKLEVFLP 125
           RVMRDPAG  +L+MRQK    + +W VH GES E   D+LF V+Q   + +KT ++VFLP
Sbjct: 69  RVMRDPAGFTILSMRQKGLALKNKWEVHGGESKE-REDLLFTVQQSQAVSLKTSVDVFLP 127

Query: 126 -NNNIIGKRAPDFYVTGSFTSLSFKVYRGKTVLCQVANHNYTWGSICKGKENFKVRVHPE 184
            NNN+      DF+ +G ++++SFKV++   ++  V    +TWGS CKGK NFKVRV+PE
Sbjct: 128 ENNNVKKTNTCDFHASGGYSNISFKVFKADALIAGVG---FTWGSFCKGKYNFKVRVNPE 184

Query: 185 VDYSFITALLVILEENE 201
           VDY+FI ALLV++++NE
Sbjct: 185 VDYAFIIALLVMVDDNE 201

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297816940|ref|XP_002876353.1| hypothetical protein ARALYDRAFT_486059 [Arabidopsis lyrata subsp. lyrata] gi|297322191|gb|EFH52612.1| hypothetical protein ARALYDRAFT_486059 [Arabidopsis lyrata subsp. lyrata]

 Score =  214 bits (544), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 99/197 (50%), Positives = 140/197 (71%), Gaps = 5/197 (2%)

Query: 6   WDYGVPIINIVGENFCVPYTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDGSLWKFQKK 65
           W  G P I++V + FC PY M+++VK+++Q  S  +Y+VFD SGNLLLQ+DG  W F +K
Sbjct: 9   WQVGDPAISVVSDQFCNPYPMDLVVKRKVQNFSKDYYEVFDPSGNLLLQIDGQAWGFNRK 68

Query: 66  RVMRDPAGIPLLTMRQKSFKWRKEWTVHPGESSEDNNDILFRVEQPSPLHIKTKLEVFLP 125
           RVMRDPAG  +L+MRQK    + +W VH GES E   D+LF V+Q   + +KT ++VFLP
Sbjct: 69  RVMRDPAGFTILSMRQKGLALKNKWEVHGGESKE-REDLLFTVQQSQAVSLKTSVDVFLP 127

Query: 126 -NNNIIGKRAPDFYVTGSFTSLSFKVYRGKTVLCQVANHNYTWGSICKGKENFKVRVHPE 184
            NNN+      DF+ +G ++++SFKV++   ++  V    +TWGS CKGK NFKVRV+PE
Sbjct: 128 ENNNVKKSNTCDFHASGGYSNISFKVFKSDALIAGVG---FTWGSFCKGKYNFKVRVNPE 184

Query: 185 VDYSFITALLVILEENE 201
           VDY+FI ALLV++++NE
Sbjct: 185 VDYAFIIALLVMVDDNE 201

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|186509973|ref|NP_001118614.1| LURP-one-like protein 9 [Arabidopsis thaliana] gi|308197095|sp|B3H5L1.1|LOR9_ARATH RecName: Full=Protein LURP-one-related 9 gi|332641468|gb|AEE74989.1| LURP-one-like protein 9 [Arabidopsis thaliana]

 Score =  169 bits (428), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 85/194 (43%), Positives = 127/194 (65%), Gaps = 8/194 (4%)

Query: 12  IINIVGENFCVPYTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDGSLWKFQKKRVMRDP 71
           ++++VGE FC PYT E++V++R + +    YDVFD+S NL+  VDG +W  ++KRV+RD 
Sbjct: 1   MVSVVGEMFCNPYTTELVVRRRRESLKRERYDVFDLSNNLIFTVDGGIWNIRRKRVLRDA 60

Query: 72  AGIPLLTMRQKSF-KWRKEWTVHPGESSEDNNDILFRVEQPSPLHIKTKLEVFLP---NN 127
           AGIPLL+MR K     R  W V+ G+S+E +N +LF   +P+ L  KT L+V LP   ++
Sbjct: 61  AGIPLLSMRTKGLVPMRYNWEVYKGDSTESDN-LLFSAREPNLLSFKTSLDVTLPPDQSS 119

Query: 128 NIIGKRAPDFYVTGSFTSLSFKVYR--GKTVLCQVANHNYTWGSICKGKENFKVRVHPEV 185
             I    PDF   G +   SFK++     T+L +V  H++TWG + KG  +FKVRV+P V
Sbjct: 120 TDISSVEPDFQTFGRYIGSSFKLFEPIHNTLLAEVV-HDFTWGGLIKGSYSFKVRVNPYV 178

Query: 186 DYSFITALLVILEE 199
           D++F+ ALLVI ++
Sbjct: 179 DFAFVVALLVITDD 192

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297833890|ref|XP_002884827.1| hypothetical protein ARALYDRAFT_317898 [Arabidopsis lyrata subsp. lyrata] gi|297330667|gb|EFH61086.1| hypothetical protein ARALYDRAFT_317898 [Arabidopsis lyrata subsp. lyrata]

 Score =  167 bits (424), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 84/195 (43%), Positives = 127/195 (65%), Gaps = 8/195 (4%)

Query: 12  IINIVGENFCVPYTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDGSLWKFQKKRVMRDP 71
           ++++VGE FC PYT E++V++R + +   HYDVFD+S NL+  V+G +W  ++KRV+RD 
Sbjct: 1   MVSVVGEMFCNPYTTELVVRRRRESLKREHYDVFDLSDNLIFTVEGGIWNIRRKRVLRDA 60

Query: 72  AGIPLLTMRQKSF-KWRKEWTVHPGESSEDNNDILFRVEQPSPLHIKTKLEVFLP---NN 127
            GIPLL+MR K     R +W V+ GES+E + D+LF   +P+ L  K  L+V LP   N+
Sbjct: 61  TGIPLLSMRTKGLVTMRYKWEVYKGESTE-SEDLLFSAREPNLLSFKPSLDVTLPPPQNS 119

Query: 128 NIIGKRAPDFYVTGSFTSLSFKVYR--GKTVLCQVANHNYTWGSICKGKENFKVRVHPEV 185
             I   APDF   G +   SFK++     T+L +V  H+++WG   KG  +FKVRV+P +
Sbjct: 120 TDISSIAPDFQTFGRYIGSSFKLFEPIHNTLLAEVV-HDFSWGGPIKGSYSFKVRVNPYI 178

Query: 186 DYSFITALLVILEEN 200
           D++F+ ALLVI ++ 
Sbjct: 179 DFAFVVALLVITDDT 193

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554644|ref|XP_003545654.1| PREDICTED: protein LURP-one-related 14-like [Glycine max]

 Score =  154 bits (388), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 85/191 (44%), Positives = 123/191 (64%), Gaps = 5/191 (2%)

Query: 12  IINIVGENFCVPYTMEMLVKKRIQGM-SNAHYDVFDISGNLLLQVDGSLWKFQKKRVMRD 70
           +I++V ++FCV Y  E+ VKK  +G   N  Y+V D++G+LLLQVDGS    +KKRVMRD
Sbjct: 1   MISVVEDSFCVTYPTEITVKKNYRGFFLNQRYEVLDVNGDLLLQVDGSSLDVRKKRVMRD 60

Query: 71  PAGIPLLTMRQKSFKWRKEWTVHPGESSEDNNDILFRVEQPSPLHIKTKLEVFLPNNNII 130
            AG P+LTMR+K    R  W VH G+SSE+  D++F V++  PL +K +L+VF+  N  I
Sbjct: 61  AAGSPILTMREKLITLRHRWMVHRGKSSEE-KDLIFGVQRSHPLDMKPRLDVFMATN--I 117

Query: 131 GKRAPDFYVTGSFTSLSFKVYRGKTVLCQVANHNYTWGSICKGKENFKVRVHPEVDYSFI 190
            +    F + GS +  S KVY+G T++ +V    Y   +     E+FKV+++  VDY+FI
Sbjct: 118 NEDISSFQLVGSHSDKSCKVYKGDTMIAEVIG-VYPRSNFSNWTESFKVKMNAGVDYAFI 176

Query: 191 TALLVILEENE 201
            ALLVIL  N+
Sbjct: 177 VALLVILTVND 187

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357506497|ref|XP_003623537.1| hypothetical protein MTR_7g072140 [Medicago truncatula] gi|355498552|gb|AES79755.1| hypothetical protein MTR_7g072140 [Medicago truncatula]

 Score =  136 bits (342), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 72/187 (38%), Positives = 117/187 (62%), Gaps = 6/187 (3%)

Query: 15  IVGENFCVPYTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGI 74
           I G+ +C PY +++ V K++  +S+ ++ V D++GN++ +V GSL   + +RV+ D AG 
Sbjct: 23  IFGQQYCAPYPVDLAVVKKVMTISDGNFAVTDVNGNIVFKVKGSLLTLRDRRVLVDAAGY 82

Query: 75  PLLTMRQKSFKWRKEWTVHPGESSEDNNDILFRVEQPSPLHIKTKLEVFLPNNNIIGKRA 134
           P+ T+R+K       W    GES+ D  D++F +++ S +  KTKL+VFL +N    +  
Sbjct: 83  PIATLRRKIMTMHDRWEAFRGEST-DAKDLIFTLKRSSLIQFKTKLDVFLASNK--KENV 139

Query: 135 PDFYVTGSFTSLSFKVYRGKT--VLCQVANHNYTWGSICKGKENFKVRVHPEVDYSFITA 192
            DF V GS+   S  VY G++  ++ Q+ +  YT  SI  GK+NF V ++P VDY+FI A
Sbjct: 140 CDFKVKGSWFDRSCIVYAGESNNIVAQM-HKKYTVQSILIGKDNFMVTIYPNVDYAFIVA 198

Query: 193 LLVILEE 199
           L+VIL+E
Sbjct: 199 LIVILDE 205

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	202
TAIR|locus:2078506	204	AT3G56180 "AT3G56180" [Arabido	0.950	0.941	0.507	4.9e-53
TAIR|locus:4515103053	197	AT3G10986 "AT3G10986" [Arabido	0.920	0.944	0.438	7.5e-41
TAIR|locus:2181082	217	AT5G01750 "AT5G01750" [Arabido	0.896	0.834	0.363	3.4e-29
TAIR|locus:2081481	194	AT3G11740 "AT3G11740" [Arabido	0.896	0.932	0.356	1.5e-28
TAIR|locus:2055250	207	LURP1 "AT2G14560" [Arabidopsis	0.905	0.884	0.317	2.4e-21
TAIR|locus:2086062	185	AT3G16900 "AT3G16900" [Arabido	0.707	0.772	0.296	2.3e-14
TAIR|locus:2064179	196	AT2G38640 "AT2G38640" [Arabido	0.742	0.765	0.229	1.4e-05
TAIR|locus:2016299	210	AT1G80120 "AT1G80120" [Arabido	0.881	0.847	0.230	3.6e-05
TAIR|locus:2065753	182	AT2G30270 "AT2G30270" [Arabido	0.782	0.868	0.209	0.0002
TAIR|locus:2093242	220	AT3G15810 "AT3G15810" [Arabido	0.747	0.686	0.223	0.00057

TAIR|locus:2078506 AT3G56180 "AT3G56180" [Arabidopsis thaliana (taxid:3702)]

 Score = 549 (198.3 bits), Expect = 4.9e-53, P = 4.9e-53
 Identities = 100/197 (50%), Positives = 140/197 (71%)

Query:     6 WDYGVPIINIVGENFCVPYTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDGSLWKFQKK 65
             W  G P I++V + FC PY M++LVK+++Q  S  +Y+VFD SGNLLLQ+DG  W F +K
Sbjct:     9 WQVGDPAISVVSDQFCNPYPMDLLVKRKVQNFSKDYYEVFDPSGNLLLQIDGQAWGFNRK 68

Query:    66 RVMRDPAGIPLLTMRQKSFKWRKEWTVHPGESSEDNNDILFRVEQPSPLHIKTKLEVFLP 125
             RVMRDPAG  +L+MRQK    + +W VH GES E   D+LF V+Q   + +KT ++VFLP
Sbjct:    69 RVMRDPAGFTILSMRQKGLALKNKWEVHGGESKE-REDLLFTVQQSQAVSLKTSVDVFLP 127

Query:   126 NNNIIGK-RAPDFYVTGSFTSLSFKVYRGKTVLCQVANHNYTWGSICKGKENFKVRVHPE 184
              NN + K    DF+ +G ++++SFKV++   ++  V    +TWGS CKGK NFKVRV+PE
Sbjct:   128 ENNNVKKTNTCDFHASGGYSNISFKVFKADALIAGVG---FTWGSFCKGKYNFKVRVNPE 184

Query:   185 VDYSFITALLVILEENE 201
             VDY+FI ALLV++++NE
Sbjct:   185 VDYAFIIALLVMVDDNE 201

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:4515103053 AT3G10986 "AT3G10986" [Arabidopsis thaliana (taxid:3702)]

 Score = 434 (157.8 bits), Expect = 7.5e-41, P = 7.5e-41
 Identities = 85/194 (43%), Positives = 127/194 (65%)

Query:    12 IINIVGENFCVPYTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDGSLWKFQKKRVMRDP 71
             ++++VGE FC PYT E++V++R + +    YDVFD+S NL+  VDG +W  ++KRV+RD 
Sbjct:     1 MVSVVGEMFCNPYTTELVVRRRRESLKRERYDVFDLSNNLIFTVDGGIWNIRRKRVLRDA 60

Query:    72 AGIPLLTMRQKSF-KWRKEWTVHPGESSEDNNDILFRVEQPSPLHIKTKLEVFLP---NN 127
             AGIPLL+MR K     R  W V+ G+S+E +N +LF   +P+ L  KT L+V LP   ++
Sbjct:    61 AGIPLLSMRTKGLVPMRYNWEVYKGDSTESDN-LLFSAREPNLLSFKTSLDVTLPPDQSS 119

Query:   128 NIIGKRAPDFYVTGSFTSLSFKVYRG--KTVLCQVANHNYTWGSICKGKENFKVRVHPEV 185
               I    PDF   G +   SFK++     T+L +V  H++TWG + KG  +FKVRV+P V
Sbjct:   120 TDISSVEPDFQTFGRYIGSSFKLFEPIHNTLLAEVV-HDFTWGGLIKGSYSFKVRVNPYV 178

Query:   186 DYSFITALLVILEE 199
             D++F+ ALLVI ++
Sbjct:   179 DFAFVVALLVITDD 192

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2181082 AT5G01750 "AT5G01750" [Arabidopsis thaliana (taxid:3702)]

 Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
 Identities = 68/187 (36%), Positives = 117/187 (62%)

Query:    15 IVGENFCVPYTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGI 74
             +V   +C PY ++M + +++  +++ ++ + D++GNLL +V   ++    KRV+ D +G 
Sbjct:    27 VVDPKYCAPYPIDMAIVRKMMSLTDGNFVITDVNGNLLFKVKEPVFGLHDKRVLLDGSGT 86

Query:    75 PLLTMRQKSFKWRKEWTVHPGESSEDNNDILFRVEQPSPLHIKTKLEVFLPNNNIIGKRA 134
             P++T+R+K       W V  G S+ D  D+L+ V++ S L +KTKL+VFL +N    KR 
Sbjct:    87 PVVTLREKMVSMHDRWQVFRGGST-DQRDLLYTVKRSSMLQLKTKLDVFLGHNKD-EKRC 144

Query:   135 PDFYVTGSFTSLSFKVYRGKT--VLCQVANHNYTWGSICKGKENFKVRVHPEVDYSFITA 192
              DF V GS+   S  VY G++  ++ Q+ +  +T  S+  GK+NF V V+P VDY+FI +
Sbjct:   145 -DFRVKGSWLERSCVVYAGESDAIVAQM-HRKHTVQSVFLGKDNFSVTVYPNVDYAFIAS 202

Query:   193 LLVILEE 199
             L+VIL++
Sbjct:   203 LVVILDD 209

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

GO:0006569 "tryptophan catabolic process" evidence=RCA

GO:0006995 "cellular response to nitrogen starvation" evidence=RCA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

TAIR|locus:2081481 AT3G11740 "AT3G11740" [Arabidopsis thaliana (taxid:3702)]

 Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
 Identities = 67/188 (35%), Positives = 117/188 (62%)

Query:    15 IVGENFCVPYTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGI 74
             IV  NFC PY +E+ + +++  +++ ++ V D++GNLL +V   L+    KR++ D    
Sbjct:     3 IVSPNFCAPYPIELGIVRKVMTLTDGNFAVTDVNGNLLFKVKEPLFSISDKRILLDAYDT 62

Query:    75 PLLTMRQKSFKWRKEWTVHPGESSEDNNDILFRVEQPSPLHI-KTKLEVFLPNNNIIGKR 133
             P+LT+R+        W V+ G+S+ D +D+L+ +++ S + I K KL++FL +N  +  +
Sbjct:    63 PILTLRENKVSLHDRWLVYRGKST-DQSDLLYTLKRSSMIQIMKPKLDIFLAHNKEM--K 119

Query:   134 APDFYVTGSFTSLSFKVYRGKT--VLCQVANHNYTWGSICKGKENFKVRVHPEVDYSFIT 191
               DF+V GS+   S  VY GK+  ++ Q+ +  +T  SI  GK NF V V+P VD++FI 
Sbjct:   120 ICDFHVKGSWIDRSCVVYAGKSDAIVAQM-HKKHTAQSILIGKSNFSVTVYPNVDFAFIV 178

Query:   192 ALLVILEE 199
             +L+VIL++
Sbjct:   179 SLIVILDD 186

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2055250 LURP1 "AT2G14560" [Arabidopsis thaliana (taxid:3702)]

 Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
 Identities = 60/189 (31%), Positives = 101/189 (53%)

Query:    15 IVGENFCVPYTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGI 74
             IVG  +C P  + + + +++  +++ ++ +    G LL +V   L+    KR++ D +G 
Sbjct:     7 IVGSKYCSPNPVGLAIVRKVMKITDGNFVITSADGKLLFKVKDPLFSLHGKRILLDCSGA 66

Query:    75 PLLTMRQKSFKWRKEWTVHPGESSEDNNDILFRVEQPSPLHIKTKLEVFLPNNNIIGKRA 134
              +LT+R K       W V  G S+E+   +L+ V++ S + +  KLEVFL NN  + ++ 
Sbjct:    67 KVLTLRGKMMTMHDRWQVFRGGSTEEGA-LLYTVKRSSMIQLAPKLEVFLANN--VEEKI 123

Query:   135 PDFYVTGSFTSLSFKVYRGK--TVLCQVANHNYTWGSICKGKENFKVRVHPEVDYSFITA 192
              DF V G++   S  VY G   T++  +     T      GK++F V V   VDY+FI +
Sbjct:   124 CDFKVKGAWLDDSCVVYAGDSDTIIAHMCGKQ-TMRGFFFGKDHFSVTVDKNVDYAFIAS 182

Query:   193 LLVILEENE 201
             L+VIL E E
Sbjct:   183 LIVILVEIE 191

GO:0003674 "molecular_function" evidence=ND

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0050832 "defense response to fungus" evidence=RCA;IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

TAIR|locus:2086062 AT3G16900 "AT3G16900" [Arabidopsis thaliana (taxid:3702)]

 Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
 Identities = 46/155 (29%), Positives = 78/155 (50%)

Query:    44 VFDISGNLLLQVDGSLWKFQKKRVMRDPAGIPLLTMRQKSFKWRKEWTVHPGESSEDNND 103
             V D +GN + +V   L+    KR++ DP   P++TM+ K       W V+ G    D +D
Sbjct:    35 VKDATGNKVFKVKTPLFGLHNKRILVDPNDSPIVTMKMKVTSKHDRWQVYRGS---DLDD 91

Query:   104 ILFRVEQPSPLHIKTKLEVFLPNNNIIGKRAPDFYVTGSFTSLSFKVYRGKTVLCQVANH 163
              +F V++ S + +KT++EVFL +N    + + DF + G F   +  +Y        VA+ 
Sbjct:    92 KIFTVKRSSTVQLKTRVEVFLKHNQT-RESSCDFTIKGRFMKRACTIY--------VADS 142

Query:   164 NYTWGSICKGKENFKVRVHPEVDYSFITALLVILE 198
                   + +G E     ++P VDY+FI  L+ I +
Sbjct:   143 TKIIAQVYEGHERLVATIYPNVDYAFIVTLIFIFD 177

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2064179 AT2G38640 "AT2G38640" [Arabidopsis thaliana (taxid:3702)]

 Score = 117 (46.2 bits), Expect = 1.4e-05, P = 1.4e-05
 Identities = 37/161 (22%), Positives = 73/161 (45%)

Query:    42 YDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGIPLLTMRQKSFKWRKEWTVHPGESSEDN 101
             + V++ +G L+ +VD  +   +   V+ D +G PLL++R+K       W V+ GE+  D 
Sbjct:    39 FTVYNANGELVFRVDNYMNCPRDNIVLMDASGFPLLSIRRKKLSLGDCWMVYDGETERDP 98

Query:   102 NDILFRVEQPSPLHIKTKLEVFLPNNNIIGKRAPDFYVTGSFTSLSFKVY---RGKTVLC 158
                +F   +   +    K   +     +  K+   + + GS+   S K+    R K    
Sbjct:    99 ---IFTARKNVSIISNRKSLAW-----VSAKKTVLYEIEGSYGQRSCKILDERRNKKKTA 150

Query:   159 QVANHNYTWGSICKGKENFKVRVHPEVDYSFITALLVILEE 199
             ++       G +  GK+ +K+ V  E++     AL +IL++
Sbjct:   151 EIKRKETVIGGVAFGKDVYKLIVESEMEPRVAMALTIILDQ 191

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2016299 AT1G80120 "AT1G80120" [Arabidopsis thaliana (taxid:3702)]

 Score = 115 (45.5 bits), Expect = 3.6e-05, P = 3.6e-05
 Identities = 44/191 (23%), Positives = 87/191 (45%)

Query:    15 IVGENFCVPYTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVD---GSLWKFQKKRVMRDP 71
             +V + F       + V+K     +   + V+D  G+L+ +VD   G   +   + V+ D 
Sbjct:     6 LVDDEFIHGEERSLTVRKTSLFFAGDGFTVYDCKGSLVFRVDSYGGPNTRDTDEVVLMDA 65

Query:    72 AGIPLLTMRQKSFKWRKEWTVHPGESSEDNNDILFRVEQPSPLHIKTKLEVFLPNNNIIG 131
              G  LLT+R+K    R+ W  + GE S+    I F V + S +  +  + V      + G
Sbjct:    66 HGRCLLTLRRKRPSLRRRWEGYLGERSDGQKPI-FGVRRSSIIG-RNSVTV-----EVYG 118

Query:   132 K-RAPDFYVTGSFTSLSFKVYRGKT--VLCQVANHNYTWGSICKGKENFKVRVHPEVDYS 188
               +  ++ + GSF + +  V   +T   + ++        ++  GK+ F + V P  D +
Sbjct:   119 DYQCSEYLIEGSFGARNCTVVEAETRRKVAEIRRKVDASTNVMLGKDVFSLNVKPGFDGA 178

Query:   189 FITALLVILEE 199
             F   L+++L++
Sbjct:   179 FAMGLVLVLDQ 189

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2065753 AT2G30270 "AT2G30270" [Arabidopsis thaliana (taxid:3702)]

 Score = 107 (42.7 bits), Expect = 0.00020, P = 0.00020
 Identities = 36/172 (20%), Positives = 79/172 (45%)

Query:    26 MEMLVKKRIQGMSNAHYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGIPLLTMRQKSFK 85
             +++   K++ G+S+      D S +L+  +  S    +    + D +G+PL ++ +    
Sbjct:    20 VDLFASKKLPGLSSGDLGFADSSEHLVFILRKSSSSLKS---LLDSSGVPLFSISRLH-- 74

Query:    86 WRKEWTVHPGESSEDNNDILFRVEQPSPLHIKTKLEVFLPNNNIIGKRAPDFYVTGSFTS 145
                 W +H G+  E   D++  V++ S    KT+ EV     +  G+ + +  + G    
Sbjct:    75 -NGVWELHKGDV-EKRKDLVLTVKRTSKRFSKTESEV-----SFAGESSENLVIKGVPFQ 127

Query:   146 LSFKVYRGKTVLCQVANHNYTWGSICKGKENFKVRVHP-EVDYSFITALLVI 196
              S  +Y   +++ Q +   Y    I  G+  F++ + P  +D+S + A++ I
Sbjct:   128 KSCTIYSQDSIVAQTSLM-YKLRQIYVGRSKFRLTIFPGSIDHSLVVAMVAI 178

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2093242 AT3G15810 "AT3G15810" [Arabidopsis thaliana (taxid:3702)]

 Score = 106 (42.4 bits), Expect = 0.00057, P = 0.00057
 Identities = 36/161 (22%), Positives = 73/161 (45%)

Query:    42 YDVFDISGNLLLQVD--GSLWKFQKKRVMRDPAGIPLLTMRQKSFKWRKEWTVHPGESSE 99
             +  +D  G+++ +VD  G   +   + V+ D  G  LLT+++K     + W    GE SE
Sbjct:    47 FAAYDCRGDIIFRVDSYGPDTRDNDEIVLMDATGKCLLTVKRKRPTLHQRWEGFLGERSE 106

Query:   100 DNNDILFRVEQPSPLHIKTKLEVFLPNNNIIGKRAPDFYVTGSFTSLSFKVY-RGKTVLC 158
                 I F V + S +  +  +EV      +      ++ + G F+  S  +Y   K  + 
Sbjct:   107 GQKPI-FSVRRSSIIG-RCTMEV-----EVYDGTGEEYIIDGDFSQRSCLIYDTKKCTVA 159

Query:   159 QVANHNYTWGSICKGKENFKVRVHPEVDYSFITALLVILEE 199
             ++        ++  G++ F + + P  D +F   L+V+L++
Sbjct:   160 EIKRKVDASTNVMLGRDVFTLEIKPGFDGAFAMGLVVVLDQ 200


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.137   0.427    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      202       202   0.00090  111 3  11 22  0.48    32
                                                     31  0.46    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  614 (65 KB)
  Total size of DFA:  194 KB (2110 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  18.63u 0.15s 18.78t   Elapsed:  00:00:01
  Total cpu time:  18.63u 0.15s 18.78t   Elapsed:  00:00:01
  Start:  Thu May  9 18:22:24 2013   End:  Thu May  9 18:22:25 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LYM3	LOR14_ARATH	No assigned EC number	0.5076	0.9504	0.9411	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_VIII000651 hypothetical protein (200 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	202
pfam04525	185	pfam04525, Tub_2, Tubby C 2	8e-40
COG4894	159	COG4894, COG4894, Uncharacterized conserved protei	8e-04

>gnl|CDD|218129 pfam04525, Tub_2, Tubby C 2

 Score =  134 bits (338), Expect = 8e-40
 Identities = 60/186 (32%), Positives = 96/186 (51%), Gaps = 7/186 (3%)

Query: 15  IVGENFCVPYTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGI 74
           +V   +  P   ++ V ++    +   + V+D +GNL+ +VDG  +    +RV+ D +G 
Sbjct: 3   VVSSEYLSPEPEDLTVWRKSLVFNGDGFTVYDSNGNLVFRVDGYAFGLSDERVLMDSSGN 62

Query: 75  PLLTMRQKSFKWRKEWTVHPGESSEDNNDILFRVEQPSPLHIKTKLEVFLPNNNIIGKRA 134
           PLLT+R+K       W V+ GE +E   D LF V + S + +KT   VF   N+ +    
Sbjct: 63  PLLTIRRKKLSLHDRWEVYRGEGTEG-KDPLFTVRRSSIVQLKTSSSVFSKRNSNVIVDD 121

Query: 135 P---DFYVTGSFTSLSFKVYRGK-TVLCQVANHNYTWGSICKGKENFKVRVHPEVDYSFI 190
               DF + GSF   S K+Y     ++ +V     T   +  GK+ + V V PEVDY+FI
Sbjct: 122 EKNCDFDIKGSFLDRSCKIYDDSDKLIAEV--KRQTSKGVFLGKDVYTVTVKPEVDYAFI 179

Query: 191 TALLVI 196
            AL+V+
Sbjct: 180 MALVVV 185

The structure of this family has been solved. It comprises a 12-stranded beta barrel with a central C-terminal alpha helix. This helix is thought to be a transmembrane helix. It is structurally similar to the C-terminal domain of the Tubby protein. In plants it plays a role in defense against pathogens. Length = 185

>gnl|CDD|227231 COG4894, COG4894, Uncharacterized conserved protein [Function unknown]

 Score = 38.2 bits (89), Expect = 8e-04
 Identities = 30/172 (17%), Positives = 69/172 (40%), Gaps = 24/172 (13%)

Query: 27  EMLVKKRIQGMSNAHYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGIPLLTMRQKSFKW 86
            + +K+++    +A + ++D  G    +V+GS +       + D +G  L+++ QK    
Sbjct: 7   TLFMKQKMFSFGDA-FHIYDRDGEEAFKVEGSFFSIGDTLTITDASGKTLVSIEQKLLSL 65

Query: 87  RKEWTVHPGESSEDNNDILFRVEQPSPLHIKTKLEVFLPNNNIIGKRAPDFYVTGSFTSL 146
              + +  G                +   ++ K+        I G    ++ + G+    
Sbjct: 66  LPRYEISDG--------------GGTVCEVRKKVTFSRDKFEIDGL---NWEIHGNIWDD 108

Query: 147 SFKVYRGKTVLCQVANHNYTWGSICKGKENFKVRVHPEVDYSFITALLVILE 198
            FK+  G+ V  +V+   ++W         + ++V P+ D   I A+ V L+
Sbjct: 109 EFKLTDGENVRAEVSKKWFSWRD------TYHLQVAPDEDALLIIAIAVALD 154

Length = 159

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	202
PF04525	187	Tub_2: Tubby C 2; InterPro: IPR007612 This is a fa	100.0
COG4894	159	Uncharacterized conserved protein [Function unknow	100.0
PF03803	221	Scramblase: Scramblase ; InterPro: IPR005552 Scram	99.71
COG4894	159	Uncharacterized conserved protein [Function unknow	98.42
PF04525	187	Tub_2: Tubby C 2; InterPro: IPR007612 This is a fa	98.17
KOG0621	292	consensus Phospholipid scramblase [Cell wall/membr	98.0
PF03803	221	Scramblase: Scramblase ; InterPro: IPR005552 Scram	97.11

>PF04525 Tub_2: Tubby C 2; InterPro: IPR007612 This is a family of plant and bacterial uncharacterised proteins

Probab=100.00  E-value=3.3e-42  Score=273.39  Aligned_cols=181  Identities=32%  Similarity=0.628  Sum_probs=109.4

Q ss_pred             eEecccccCCccEEEEEEEEeeeEeCCCEEEEcCCCCEEEEEec-cCCCcCCeEEEECCCCCeEEEEEecccccCCeEEE
Q 028860           14 NIVGENFCVPYTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDG-SLWKFQKKRVMRDPAGIPLLTMRQKSFKWRKEWTV   92 (202)
Q Consensus        14 ~vv~~~~~~~~~~~l~ik~k~~~~~~~~f~V~D~~G~~v~~V~g-~~~s~~~~~~l~D~~G~~L~~i~~k~~s~~~~~~i   92 (202)
                      +||+++||++.|++|+|++|.++++.++|+|+|++|+++|+|+| +.+++++++.|+|++|+||++|+++.++++++|++
T Consensus         2 ~vv~~~~~~~~~~~l~v~~k~~~~~~~~f~V~D~~G~~vf~V~g~~~~s~~~~~~l~D~~G~~L~~i~~k~~~l~~~w~i   81 (187)
T PF04525_consen    2 VVVDAQYCSPQPVTLTVKKKSLSFSGDDFTVYDENGNVVFRVDGGKFFSIGKKRTLMDASGNPLFTIRRKLFSLRPTWEI   81 (187)
T ss_dssp             -SS-GGGB-SS-EEEEEE----------EEEEETTS-EEEEEE--SCTTBTTEEEEE-TTS-EEEEEE--------EEEE
T ss_pred             cEECHHHcCCCceEEEEEEEEeeecCCCEEEEcCCCCEEEEEEEecccCCCCEEEEECCCCCEEEEEEeeecccceEEEE
Confidence            57799999999999999999888876799999999999999999 89999999999999999999999999999999999


Q ss_pred             EeCCCCCCCCceEEEEEcCCCCCCCceEEEEecCCCc---CCCCCCeEEEEeeecCceeEEE-ECCeEEEEEEeeeeccc
Q 028860           93 HPGESSEDNNDILFRVEQPSPLHIKTKLEVFLPNNNI---IGKRAPDFYVTGSFTSLSFKVY-RGKTVLCQVANHNYTWG  168 (202)
Q Consensus        93 ~~~~~~~~~~~~l~tik~~~~~~~k~~~~v~~~~~~~---~~~~~~~~~v~G~~~~~~~~I~-~~~~~va~v~~~~~~~~  168 (202)
                      |.+++.++ ++++|+||+.+....+.++.+|+.....   .+...++|+|+|||++++|+|+ .+|++||+|++++ ..+
T Consensus        82 ~~~~~~~~-~~~i~tvkk~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~i~G~~~~~~~~I~~~~g~~VA~i~rk~-~~k  159 (187)
T PF04525_consen   82 YRGGGSEG-KKPIFTVKKKSMLQNKDSFDVFLPPKSNISIDDSEGPDFEIKGNFWDRSFTIYDSGGRVVAEISRKY-SSK  159 (187)
T ss_dssp             EETT---G-GGEEEEEE----------EEEEET--T----------SEEEES-TTTT--EEEECC--EEEEEEE------
T ss_pred             EECCCCcc-CceEEEEEEecccCCCcceeEEEecccceeecCCCCceEEEEEEecCcEEEEEEcCCCEEEEEeccc-cee
Confidence            99998755 6789999998777778888898863211   0123369999999999999999 5699999995444 477


Q ss_pred             eeeeceeeEEEEEcCCCCHHHHHHHHhh
Q 028860          169 SICKGKENFKVRVHPEVDYSFITALLVI  196 (202)
Q Consensus       169 ~~~~~~d~Y~v~V~pg~D~~li~al~v~  196 (202)
                      +++.++|+|.|+|+||+|++|++|||+|
T Consensus       160 ~~~~~~dty~l~V~pg~D~~lv~alvvi  187 (187)
T PF04525_consen  160 KWFSGRDTYTLTVAPGVDQALVVALVVI  187 (187)
T ss_dssp             -----B-SEEEEE-TTSBHHHHHHHHHH
T ss_pred             eEEecCcEEEEEEcCCCCHHHheeEEeC
Confidence            8999999999999999999999999986

; PDB: 1ZXU_A 2Q4M_A.

>COG4894 Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=1.7e-35  Score=218.50  Aligned_cols=153  Identities=18%  Similarity=0.374  Sum_probs=136.0

Q ss_pred             cEEEEEEEEeeeEeCCCEEEEcCCCCEEEEEeccCCCcCCeEEEECCCCCeEEEEEecccccCCeEEEEeCCCCCCCCce
Q 028860           25 TMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGIPLLTMRQKSFKWRKEWTVHPGESSEDNNDI  104 (202)
Q Consensus        25 ~~~l~ik~k~~~~~~~~f~V~D~~G~~v~~V~g~~~s~~~~~~l~D~~G~~L~~i~~k~~s~~~~~~i~~~~~~~~~~~~  104 (202)
                      +.+|.++||+.++++ +|.|+|++|+.+|+|+|+.+++++.++|.|++|.+|.+|+++.++++|+|+|.++++.      
T Consensus         5 ~~tl~mkQk~~~~gd-~f~I~d~dgE~af~VeGs~f~i~dtlti~Da~G~~l~~i~~kll~l~~~yeI~d~~g~------   77 (159)
T COG4894           5 MITLFMKQKMFSFGD-AFHIYDRDGEEAFKVEGSFFSIGDTLTITDASGKTLVSIEQKLLSLLPRYEISDGGGT------   77 (159)
T ss_pred             hHhHhhhhhhhhccc-ceEEECCCCcEEEEEeeeEEeeCceEEEEecCCCChHHHHHHHhhccceeEEEcCCCC------
Confidence            467899999999988 9999999999999999999999999999999999999999999999999999999864      


Q ss_pred             EEEEEcCCCCCCCceEEEEecCCCcCCCCCCeEEEEeeecCceeEEEECCeEEEEEEeeeeccceeeeceeeEEEEEcCC
Q 028860          105 LFRVEQPSPLHIKTKLEVFLPNNNIIGKRAPDFYVTGSFTSLSFKVYRGKTVLCQVANHNYTWGSICKGKENFKVRVHPE  184 (202)
Q Consensus       105 l~tik~~~~~~~k~~~~v~~~~~~~~~~~~~~~~v~G~~~~~~~~I~~~~~~va~v~~~~~~~~~~~~~~d~Y~v~V~pg  184 (202)
                      ++.++|+        ++|+......   +..+|+++||+|+.+|++.+|++++|+|+|+      |++++|+|.|+|+|+
T Consensus        78 ~~~vrKK--------~tf~Rdk~e~---d~~~~eihGNi~d~efkl~dg~~~~aeVsKk------wf~~rdTY~l~vapd  140 (159)
T COG4894          78 VCEVRKK--------VTFSRDKFEI---DGLNWEIHGNIWDDEFKLTDGENVRAEVSKK------WFSWRDTYHLQVAPD  140 (159)
T ss_pred             EEEEEEE--------EEEEeeeEEE---cCCCeEEecceeceEEEEecCCceehhheee------eEeccceEEEEEcCc
Confidence            7777653        3444333322   2247999999999999999999999999777      688999999999999


Q ss_pred             CCHHHHHHHHhhhhccc
Q 028860          185 VDYSFITALLVILEENE  201 (202)
Q Consensus       185 ~D~~li~al~v~lD~~~  201 (202)
                      .|..+|+++|+++|+++
T Consensus       141 e~a~lii~i~VaLD~v~  157 (159)
T COG4894         141 EDALLIIAIAVALDMVL  157 (159)
T ss_pred             hhhHHHHHHHHHHHHHh
Confidence            99999999999999985

>PF03803 Scramblase: Scramblase ; InterPro: IPR005552 Scramblase is palmitoylated and contains a potential protein kinase C phosphorylation site

Probab=99.71  E-value=2.9e-15  Score=121.63  Aligned_cols=164  Identities=16%  Similarity=0.260  Sum_probs=129.3

Q ss_pred             cEEEEEEEEeeeE-------eCCCEEEEcCCCCEEEEEeccCC---------CcCCeEEEECCCCCeEEEEEeccccc--
Q 028860           25 TMEMLVKKRIQGM-------SNAHYDVFDISGNLLLQVDGSLW---------KFQKKRVMRDPAGIPLLTMRQKSFKW--   86 (202)
Q Consensus        25 ~~~l~ik~k~~~~-------~~~~f~V~D~~G~~v~~V~g~~~---------s~~~~~~l~D~~G~~L~~i~~k~~s~--   86 (202)
                      .-.++|+|+.-.+       ..+.|.|+|.+|+.+|.+.+..-         .-+-++.++|.+|+++++++|..-..  
T Consensus        21 ~~~l~I~Q~~e~~e~~~~~e~~N~Y~I~n~~g~~i~~~~E~s~~~~R~~~~~~R~f~~~i~D~~g~~vl~i~Rp~~c~~C  100 (221)
T PF03803_consen   21 LDQLLIKQQIEPLEIFTGFETPNRYDIKNPNGQQIYYAVEESDCCSRQCCGSHRPFKMHIYDNYGREVLTIERPFKCCSC  100 (221)
T ss_pred             CCEEEEEEEEEEeceecccccCceEEEECCCCCEEEEEEEeCcceeeeecCCCCCEEEEEEecCCCEEEEEEcCCcceec
Confidence            4677888875532       35699999999999999876421         12556899999999999999975322  


Q ss_pred             ----CCeEEEEeCCCCCCCCceEEEEEcCCCCCCCceEEEEecCCCcCCCCCCeEEEEee------ecCceeEEEEC-Ce
Q 028860           87 ----RKEWTVHPGESSEDNNDILFRVEQPSPLHIKTKLEVFLPNNNIIGKRAPDFYVTGS------FTSLSFKVYRG-KT  155 (202)
Q Consensus        87 ----~~~~~i~~~~~~~~~~~~l~tik~~~~~~~k~~~~v~~~~~~~~~~~~~~~~v~G~------~~~~~~~I~~~-~~  155 (202)
                          ..+.+|+.+.     .++|++|+++. ...+.+++|+.+++.      .-+.|+|.      +.+++|.|++. |+
T Consensus       101 ~~~~~~~~~V~~p~-----g~~iG~I~q~~-~~~~~~f~I~d~~~~------~~~~I~gp~~~~~~~~~~~F~I~~~~~~  168 (221)
T PF03803_consen  101 CPCCLQEMEVESPP-----GNLIGSIRQPF-SCCRPNFDIFDANGN------PIFTIKGPCCCCSCCCDWEFEIKDPNGQ  168 (221)
T ss_pred             ccccceeEEEecCC-----CcEEEEEEEcC-cccceEEEEEECCCc------eEEEEeCCcceeccccceeeeeecccCc
Confidence                3677776666     46899999763 335788999987753      36778886      46789999994 99


Q ss_pred             EEEEEEeeeeccc-eeeeceeeEEEEEcCCCC---HHHHHHHHhhhhcc
Q 028860          156 VLCQVANHNYTWG-SICKGKENFKVRVHPEVD---YSFITALLVILEEN  200 (202)
Q Consensus       156 ~va~v~~~~~~~~-~~~~~~d~Y~v~V~pg~D---~~li~al~v~lD~~  200 (202)
                      .||+|+|+|.++. +.++..|+|.|+..+..|   .++++|+++.||.+
T Consensus       169 ~vg~I~k~w~G~~~e~~t~~d~f~i~Fp~~l~~~~Kalll~a~~liD~~  217 (221)
T PF03803_consen  169 EVGSITKKWSGFCRELFTDADNFVIEFPPDLDVEQKALLLGAAFLIDYM  217 (221)
T ss_pred             EEEEEEEecCCcchhhccccceEEEEcCCCCCHHHHHHHHHHHHHhhhh
Confidence            9999999998876 678899999999999886   59999999999975

Scramblase exhibits Ca2+-activated phospholipid scrambling activity in vitro. There are also possible SH3 and WW binding motifs. Scramblase is involved in the redistribution of phospholipids after cell activation or injury [].

>COG4894 Uncharacterized conserved protein [Function unknown]

Probab=98.42  E-value=3.8e-07  Score=68.22  Aligned_cols=72  Identities=15%  Similarity=0.244  Sum_probs=65.1

Q ss_pred             ccCCccEEEEEEEEeeeEeCCCEEEEcCCCCEEEEEeccCCCcCCeEEEECCCCCeEEEEEecccccCCeEEEE
Q 028860           20 FCVPYTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGIPLLTMRQKSFKWRKEWTVH   93 (202)
Q Consensus        20 ~~~~~~~~l~ik~k~~~~~~~~f~V~D~~G~~v~~V~g~~~s~~~~~~l~D~~G~~L~~i~~k~~s~~~~~~i~   93 (202)
                      |=...+..+.|+-+.+++.+ .|+|+|+.|.+++.++.+.+++.+++.|-|.+|+ .+.+++|...++++|++-
T Consensus        24 ~d~dgE~af~VeGs~f~i~d-tlti~Da~G~~l~~i~~kll~l~~~yeI~d~~g~-~~~vrKK~tf~Rdk~e~d   95 (159)
T COG4894          24 YDRDGEEAFKVEGSFFSIGD-TLTITDASGKTLVSIEQKLLSLLPRYEISDGGGT-VCEVRKKVTFSRDKFEID   95 (159)
T ss_pred             ECCCCcEEEEEeeeEEeeCc-eEEEEecCCCChHHHHHHHhhccceeEEEcCCCC-EEEEEEEEEEEeeeEEEc
Confidence            33578899999999999988 8999999999999999999999999999999999 888888876669999883

>PF04525 Tub_2: Tubby C 2; InterPro: IPR007612 This is a family of plant and bacterial uncharacterised proteins

Probab=98.17  E-value=1.3e-05  Score=63.38  Aligned_cols=98  Identities=13%  Similarity=0.234  Sum_probs=51.2

Q ss_pred             CCccEEEEEEE-EeeeEeCCCEEEEcCCCCEEEEEeccCCCcCCeEEEECCCCCe----EEEEEec-ccccCCeEEEEeC
Q 028860           22 VPYTMEMLVKK-RIQGMSNAHYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGIP----LLTMRQK-SFKWRKEWTVHPG   95 (202)
Q Consensus        22 ~~~~~~l~ik~-k~~~~~~~~f~V~D~~G~~v~~V~g~~~s~~~~~~l~D~~G~~----L~~i~~k-~~s~~~~~~i~~~   95 (202)
                      .+....|.++. +.++++. ...++|.+|+++++++.+.+++..++.++++++..    +++++++ .+..++...+|.+
T Consensus        35 ~~G~~vf~V~g~~~~s~~~-~~~l~D~~G~~L~~i~~k~~~l~~~w~i~~~~~~~~~~~i~tvkk~~~~~~~~~~~~f~~  113 (187)
T PF04525_consen   35 ENGNVVFRVDGGKFFSIGK-KRTLMDASGNPLFTIRRKLFSLRPTWEIYRGGGSEGKKPIFTVKKKSMLQNKDSFDVFLP  113 (187)
T ss_dssp             TTS-EEEEEE--SCTTBTT-EEEEE-TTS-EEEEEE--------EEEEEETT---GGGEEEEEE----------EEEEET
T ss_pred             CCCCEEEEEEEecccCCCC-EEEEECCCCCEEEEEEeeecccceEEEEEECCCCccCceEEEEEEecccCCCcceeEEEe
Confidence            35778999999 7888888 99999999999999999999999999999999984    9999998 3445666666665


Q ss_pred             CCC-----CCCCceEEEEEcCCCCCCCceEEEEe
Q 028860           96 ESS-----EDNNDILFRVEQPSPLHIKTKLEVFL  124 (202)
Q Consensus        96 ~~~-----~~~~~~l~tik~~~~~~~k~~~~v~~  124 (202)
                      ...     .. ..+-++|+-. ++  ..+++|+.
T Consensus       114 ~~~~~~~~~~-~~~~~~i~G~-~~--~~~~~I~~  143 (187)
T PF04525_consen  114 PKSNISIDDS-EGPDFEIKGN-FW--DRSFTIYD  143 (187)
T ss_dssp             --T-----------SEEEES--TT--TT--EEEE
T ss_pred             cccceeecCC-CCceEEEEEE-ec--CcEEEEEE
Confidence            210     01 3345677532 22  34666664

; PDB: 1ZXU_A 2Q4M_A.

>KOG0621 consensus Phospholipid scramblase [Cell wall/membrane/envelope biogenesis]

Probab=98.00  E-value=0.00028  Score=59.51  Aligned_cols=151  Identities=14%  Similarity=0.128  Sum_probs=102.3

Q ss_pred             eCCCEEEEcCCCCEEEEEeccC---------CCcCCeEEEECCCCCeEEEEEecccccC--------CeEEEEeCCCCCC
Q 028860           38 SNAHYDVFDISGNLLLQVDGSL---------WKFQKKRVMRDPAGIPLLTMRQKSFKWR--------KEWTVHPGESSED  100 (202)
Q Consensus        38 ~~~~f~V~D~~G~~v~~V~g~~---------~s~~~~~~l~D~~G~~L~~i~~k~~s~~--------~~~~i~~~~~~~~  100 (202)
                      +.|.|.|.|.+|+.+|.+-+.-         -.-+-...++|.-|+++++++|......        ...++-.+.    
T Consensus        97 t~NRY~v~~~~g~~v~~~~E~S~~~~Rq~~g~~RpF~~~i~D~~g~eVl~~~R~~~c~~~~c~~~~~~~~~v~~p~----  172 (292)
T KOG0621|consen   97 TANRYVVHDMYGQPLYYAMERSNVFARQYLGTHRPFAMRIMDNFGQEVLTCKRPFPCCSSACALCLAQEIEIQSPP----  172 (292)
T ss_pred             cCcEEEEEcCCcChhHHHHhhchHHHHHhhccCCcceeEeecccCcEEEEEeccccccccccccccccEEEEEcCC----
Confidence            4669999999999999775431         1236778999999999999999864332        233333333    


Q ss_pred             CCceEEEEEcCCCCCCCceEEEEecCCCcCCCCCCeEEEEee-------ecCce-eEEEEC-CeEEEEEEeeeeccc-ee
Q 028860          101 NNDILFRVEQPSPLHIKTKLEVFLPNNNIIGKRAPDFYVTGS-------FTSLS-FKVYRG-KTVLCQVANHNYTWG-SI  170 (202)
Q Consensus       101 ~~~~l~tik~~~~~~~k~~~~v~~~~~~~~~~~~~~~~v~G~-------~~~~~-~~I~~~-~~~va~v~~~~~~~~-~~  170 (202)
                       .-++++|.+... ....++.+......      ..+.|+|-       .-+.. |.+..+ ++.|++|+|+|.+.. +.
T Consensus       173 -~~~lG~v~q~~~-~~~~~f~i~~~~~~------~v~~v~gp~~~~~~~~~d~~f~~~~~d~~~~vg~I~k~w~g~~rE~  244 (292)
T KOG0621|consen  173 -MGLLGKVLQTWG-CVNPNFHLWDRDGN------LVFLVEGPRCCTFACCDDTVFFPKTTDNGRIVGSISRKWAGLVREA  244 (292)
T ss_pred             -CceEEEEEEeec-cccceEEEEcccce------eEEEEEcCceeEEEeecCcceeEEEcCCCeEEEEEeecccchhhhh
Confidence             234666654421 12345555542221      13444443       22233 444444 999999999999887 88


Q ss_pred             eeceeeEEEEEcCCCC---HHHHHHHHhhhhcc
Q 028860          171 CKGKENFKVRVHPEVD---YSFITALLVILEEN  200 (202)
Q Consensus       171 ~~~~d~Y~v~V~pg~D---~~li~al~v~lD~~  200 (202)
                      +++.|+|.|.-.-+.|   .++++|.+..||.+
T Consensus       245 fTDad~f~v~FPldLdvk~kavllga~flID~~  277 (292)
T KOG0621|consen  245 FTDADTFVVHFPLDLDVKLKALLLGSTFLIDYM  277 (292)
T ss_pred             eeccceeeEecCCcCCHHHHhhhhhheeeEEEE
Confidence            9999999999988877   48999999999865

>PF03803 Scramblase: Scramblase ; InterPro: IPR005552 Scramblase is palmitoylated and contains a potential protein kinase C phosphorylation site

Probab=97.11  E-value=0.0043  Score=50.14  Aligned_cols=66  Identities=17%  Similarity=0.366  Sum_probs=54.5

Q ss_pred             CEEEEcCCCCEEEEEeccCCCc-------CCeEEEECCCCCeEEEEEecccccCCeEEEEeCCCCCCCCceEEEEEcCC
Q 028860           41 HYDVFDISGNLLLQVDGSLWKF-------QKKRVMRDPAGIPLLTMRQKSFKWRKEWTVHPGESSEDNNDILFRVEQPS  112 (202)
Q Consensus        41 ~f~V~D~~G~~v~~V~g~~~s~-------~~~~~l~D~~G~~L~~i~~k~~s~~~~~~i~~~~~~~~~~~~l~tik~~~  112 (202)
                      ...|+|..|+.|++++-. +..       ..+..+.++.|+++++|+++.-.+.++|+|+++++     +++++|+.+.
T Consensus        77 ~~~i~D~~g~~vl~i~Rp-~~c~~C~~~~~~~~~V~~p~g~~iG~I~q~~~~~~~~f~I~d~~~-----~~~~~I~gp~  149 (221)
T PF03803_consen   77 KMHIYDNYGREVLTIERP-FKCCSCCPCCLQEMEVESPPGNLIGSIRQPFSCCRPNFDIFDANG-----NPIFTIKGPC  149 (221)
T ss_pred             EEEEEecCCCEEEEEEcC-CcceecccccceeEEEecCCCcEEEEEEEcCcccceEEEEEECCC-----ceEEEEeCCc
Confidence            347889999999999864 332       46788899999999999998766899999999984     5699998764

Scramblase exhibits Ca2+-activated phospholipid scrambling activity in vitro. There are also possible SH3 and WW binding motifs. Scramblase is involved in the redistribution of phospholipids after cell activation or injury [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	202
1zxu_A	217	X-Ray Structure Of Protein From Arabidopsis Thalian		1e-28

>pdb|1ZXU|A Chain A, X-Ray Structure Of Protein From Arabidopsis Thaliana At5g01750 Length = 217

Iteration: 1
 Score =  122 bits (306), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 65/186 (34%), Positives = 111/186 (59%), Gaps = 4/186 (2%)
Query: 15  IVGENFCVPYTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGI 74
           +V   +C PY ++  + ++   +++ ++ + D++GNLL +V   ++    KRV+ D +G 
Sbjct: 27  VVDPKYCAPYPIDXAIVRKXXSLTDGNFVITDVNGNLLFKVKEPVFGLHDKRVLLDGSGT 86
Query: 75  PLLTMRQKSFKWRKEWTVHPGESSEDNNDILFRVEQPSPLHIKTKLEVFLPNNNIIGKRA 134
           P++T+R+K       W V  G S+ D  D+L+ V++ S L +KTKL+VFL +N    ++ 
Sbjct: 87  PVVTLREKXVSXHDRWQVFRGGST-DQRDLLYTVKRSSXLQLKTKLDVFLGHNK--DEKR 143
Query: 135 PDFYVTGSFTSLSFKVYRGKTVLCQVANH-NYTWGSICKGKENFKVRVHPEVDYSFITAL 193
            DF V GS+   S  VY G++       H  +T  S+  GK+NF V V+P VDY+FI +L
Sbjct: 144 CDFRVKGSWLERSCVVYAGESDAIVAQXHRKHTVQSVFLGKDNFSVTVYPNVDYAFIASL 203
Query: 194 LVILEE 199
           +VIL++
Sbjct: 204 VVILDD 209

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	202
1zxu_A	217	AT5G01750 protein; PFAM PF01167, TULP, structural	3e-43

>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A Length = 217

 Score =  143 bits (361), Expect = 3e-43
 Identities = 66/187 (35%), Positives = 116/187 (62%), Gaps = 6/187 (3%)

Query: 15  IVGENFCVPYTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGI 74
           +V   +C PY ++M + +++  +++ ++ + D++GNLL +V   ++    KRV+ D +G 
Sbjct: 27  VVDPKYCAPYPIDMAIVRKMMSLTDGNFVITDVNGNLLFKVKEPVFGLHDKRVLLDGSGT 86

Query: 75  PLLTMRQKSFKWRKEWTVHPGESSEDNNDILFRVEQPSPLHIKTKLEVFLPNNNIIGKRA 134
           P++T+R+K       W V  G  S D  D+L+ V++ S L +KTKL+VFL +N    ++ 
Sbjct: 87  PVVTLREKMVSMHDRWQVFRGG-STDQRDLLYTVKRSSMLQLKTKLDVFLGHNK--DEKR 143

Query: 135 PDFYVTGSFTSLSFKVYRGKT--VLCQVANHNYTWGSICKGKENFKVRVHPEVDYSFITA 192
            DF V GS+   S  VY G++  ++ Q+ +  +T  S+  GK+NF V V+P VDY+FI +
Sbjct: 144 CDFRVKGSWLERSCVVYAGESDAIVAQM-HRKHTVQSVFLGKDNFSVTVYPNVDYAFIAS 202

Query: 193 LLVILEE 199
           L+VIL++
Sbjct: 203 LVVILDD 209

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	202
1zxu_A	217	AT5G01750 protein; PFAM PF01167, TULP, structural	100.0
1zxu_A	217	AT5G01750 protein; PFAM PF01167, TULP, structural	98.22

>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A

Probab=100.00  E-value=1.5e-42  Score=280.04  Aligned_cols=193  Identities=35%  Similarity=0.648  Sum_probs=146.1

Q ss_pred             CCCCCCCeeeEecccccCCccEEEEEEEEeeeEeCCCEEEEcCCCCEEEEEeccCCCcCCeEEEECCCCCeEEEEEeccc
Q 028860            5 GWDYGVPIINIVGENFCVPYTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGIPLLTMRQKSF   84 (202)
Q Consensus         5 ~~~~~~~~~~vv~~~~~~~~~~~l~ik~k~~~~~~~~f~V~D~~G~~v~~V~g~~~s~~~~~~l~D~~G~~L~~i~~k~~   84 (202)
                      .+.=+++|++||+++||++.+++|+||||.+++++++|+|+|++|+++|+|+|+.+++++++.|+|++|++|++|+++.+
T Consensus        17 ~~~~~~~~~~vv~~~~~~~~~~~l~vkqk~~~~~~~~f~V~D~~G~~vf~V~~~~~~~~~~~~l~D~~G~~l~~i~rk~~   96 (217)
T 1zxu_A           17 GAPTPQAGGVVVDPKYCAPYPIDMAIVRKMMSLTDGNFVITDVNGNLLFKVKEPVFGLHDKRVLLDGSGTPVVTLREKMV   96 (217)
T ss_dssp             -------CCCSSCGGGBCSSCEEEEEECC-----CCCEEEEETTSCEEEEEECSSTTCCSEEEEECTTSCEEEEEEC---
T ss_pred             CCCCCCCcEEEECccccCCCCcEEEEEEEEeEeeCCCEEEEeCCCCEEEEEEccccCCCCEEEEECCCCCEEEEEEcccc
Confidence            34445678999999999999999999999999998899999999999999999999999999999999999999999999


Q ss_pred             ccCCeEEEEeCCCCCCCCceEEEEEcCCCCCCCceEEEEecCCCcCCCCCCeEEEEeeecCceeEEEEC--CeEEEEEEe
Q 028860           85 KWRKEWTVHPGESSEDNNDILFRVEQPSPLHIKTKLEVFLPNNNIIGKRAPDFYVTGSFTSLSFKVYRG--KTVLCQVAN  162 (202)
Q Consensus        85 s~~~~~~i~~~~~~~~~~~~l~tik~~~~~~~k~~~~v~~~~~~~~~~~~~~~~v~G~~~~~~~~I~~~--~~~va~v~~  162 (202)
                      +++++|++|++++.+. .+++|+|++++.+.++.+++|+..++.. ++. ++|+|+|+|++++|+|+++  |++||+|++
T Consensus        97 ~~~~~~~v~~~~~~~~-~~~i~~vrk~~~~~~~~~~~V~~~~~~~-~~~-~~~~I~G~~~~~~f~I~~~~~~~~Va~I~k  173 (217)
T 1zxu_A           97 SMHDRWQVFRGGSTDQ-RDLLYTVKRSSMLQLKTKLDVFLGHNKD-EKR-CDFRVKGSWLERSCVVYAGESDAIVAQMHR  173 (217)
T ss_dssp             ---CEEEEEETTCCCG-GGEEEEEEC-------CCEEEEETTCCC--CC-CSEEEESCTTTTCCEEEETTTCCEEEEEEE
T ss_pred             ccCcEEEEEcCCCCCC-CcEEEEEEEeccccCCCeEEEEECCCCC-CCc-eEEEEEEeEeCCEEEEEECCCCEEEEEEEe
Confidence            9999999999886532 3689999988655578899999876532 223 5899999999999999999  899999966


Q ss_pred             eeeccceeeeceeeEEEEEcCCCCHHHHHHHHhhhhccc
Q 028860          163 HNYTWGSICKGKENFKVRVHPEVDYSFITALLVILEENE  201 (202)
Q Consensus       163 ~~~~~~~~~~~~d~Y~v~V~pg~D~~li~al~v~lD~~~  201 (202)
                      + .++++++.++|+|.|+|.||+|.+|++|+|++||+++
T Consensus       174 k-~~~~~~~~~~D~y~l~V~p~~D~aliialvv~iD~~~  211 (217)
T 1zxu_A          174 K-HTVQSVFLGKDNFSVTVYPNVDYAFIASLVVILDDVN  211 (217)
T ss_dssp             C---------CBCSEEEEECTTSBHHHHHHHHHHHHHHH
T ss_pred             e-eeccccccCCcEEEEEECCCCCHHHHHHHHHHHHHhh
Confidence            5 5677889999999999999999999999999999975

>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A

Probab=98.22  E-value=5.6e-06  Score=65.88  Aligned_cols=100  Identities=17%  Similarity=0.254  Sum_probs=68.6

Q ss_pred             CCccEEEEEEEEeeeEeCCCEEEEcCCCCEEEEEeccCCCcCCeEEEECCCCC----eEEEEEecc-cccCCeEEEEeCC
Q 028860           22 VPYTMEMLVKKRIQGMSNAHYDVFDISGNLLLQVDGSLWKFQKKRVMRDPAGI----PLLTMRQKS-FKWRKEWTVHPGE   96 (202)
Q Consensus        22 ~~~~~~l~ik~k~~~~~~~~f~V~D~~G~~v~~V~g~~~s~~~~~~l~D~~G~----~L~~i~~k~-~s~~~~~~i~~~~   96 (202)
                      ......|+++.+.++++. .+.|+|.+|+++++++.+.+++..++.++++++.    ++++||++. ++++++|+|+.++
T Consensus        59 ~~G~~vf~V~~~~~~~~~-~~~l~D~~G~~l~~i~rk~~~~~~~~~v~~~~~~~~~~~i~~vrk~~~~~~~~~~~V~~~~  137 (217)
T 1zxu_A           59 VNGNLLFKVKEPVFGLHD-KRVLLDGSGTPVVTLREKMVSMHDRWQVFRGGSTDQRDLLYTVKRSSMLQLKTKLDVFLGH  137 (217)
T ss_dssp             TTSCEEEEEECSSTTCCS-EEEEECTTSCEEEEEEC------CEEEEEETTCCCGGGEEEEEEC-------CCEEEEETT
T ss_pred             CCCCEEEEEEccccCCCC-EEEEECCCCCEEEEEEccccccCcEEEEEcCCCCCCCcEEEEEEEeccccCCCeEEEEECC
Confidence            457789999998777777 9999999999999999998899999999998875    799999973 5689999999875


Q ss_pred             CCCCCCceEEEEEcCCCCCCCceEEEEecC
Q 028860           97 SSEDNNDILFRVEQPSPLHIKTKLEVFLPN  126 (202)
Q Consensus        97 ~~~~~~~~l~tik~~~~~~~k~~~~v~~~~  126 (202)
                      .... +.+.++|+-. ++  ...++|...+
T Consensus       138 ~~~~-~~~~~~I~G~-~~--~~~f~I~~~~  163 (217)
T 1zxu_A          138 NKDE-KRCDFRVKGS-WL--ERSCVVYAGE  163 (217)
T ss_dssp             CCC--CCCSEEEESC-TT--TTCCEEEETT
T ss_pred             CCCC-CceEEEEEEe-Ee--CCEEEEEECC
Confidence            3211 2357888643 22  4567777653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	202
d2q4ma1	189	d.23.1.2 (A:24-212) Hypothetical protein At5g01750	2e-45

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	202
d2q4ma1	189	Hypothetical protein At5g01750 {Thale cress (Arabi	100.0
d2q4ma1	189	Hypothetical protein At5g01750 {Thale cress (Arabi	98.24