Citrus Sinensis ID: 028903

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200--
MVKLRHSRLQAKKWSTLTLVLSMLFMLTIVLLMLLAMGIFYIPIGDDDSPPNDLTSFRRRAFEKRSSIAEEKGEQWTEIVAWEPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTSSGTFLKRGQDRIIRGIEKRIADFTFIPMEHGEGIQVLHYEVGQKYDAHYDYFLDEFNTKNGGQRMATLLMYL
cccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHcccccccccccccccEEEEEcccccEEEEcccccHHHHHHHHHHHcccccccEEEcccccccccccEEEEEcccccccccHHHHHHHHHHHHHHccccccccccEEEEccccccccccccccccccccccccccEEEEEEcc
cccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcEccccccccccccccHHHHccccccccccccccccEEEEEEcccEEEEEcccccHHHHHHHHHHHcHHHHHcEEEccccccEEEEEEEEcccccccccccHHHHHHHHHHHHHccccccccccEEEEEEccccccccccccccccHcccccccEEEEEEEHc
mvklrhsrlqakkWSTLTLVLSMLFMLTIVLLMLLAMGIFyipigdddsppndltsFRRRAFEKRSSIAEEKGEQWTEIVAWEPRAFVYHNFLSKAECEYLIDlakpymvkstvvdsktgqskdsrvrtssgtflkRGQDRIIRGIEKRiadftfipmehgegiQVLHYEVGQKYDAHYDYFLdefntknggQRMATLLMYL
mvklrhsrlqakkwstLTLVLSMLFMLTIVLLMLLAMGIFYIPIGDDDSPPNDLTSFRRRAFEkrssiaeekgeqwteivAWEPRAFVYHNFLSKAECEYLIDLAKPYMVKSTvvdsktgqskdsrvrtssgtflkrgqdriIRGIEKRIADFTFIPMEHGEGIQVLHYEVGQKYDAHYDYFLDEFNTKNGGQRMATLLMYL
MVKLRHSRLQAKKWSTLTLVLSmlfmltivllmllamGIFYIPIGDDDSPPNDLTSFRRRAFEKRSSIAEEKGEQWTEIVAWEPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTSSGTFLKRGQDRIIRGIEKRIADFTFIPMEHGEGIQVLHYEVGQKYDAHYDYFLDEFNTKNGGQRMATLLMYL
**********AKKWSTLTLVLSMLFMLTIVLLMLLAMGIFYIPIG****************************EQWTEIVAWEPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVV******************FLKRGQDRIIRGIEKRIADFTFIPMEHGEGIQVLHYEVGQKYDAHYDYFLDEFNTKNG***********
*****************TLVLSMLFMLTIVLLMLLAMG**********************AFEKRSSIAEEKGEQWTEIVAWEPRAFVYHNFLSKAECEYLIDLAKPYMVKSTV****TGQSKDSRVRTSSGTFLKRGQDRIIRGIEKRIADFTFIPMEHGEGIQVLHYEVGQKYDAHYDYFLDEFNTKNGGQRMATLLMYL
*********QAKKWSTLTLVLSMLFMLTIVLLMLLAMGIFYIPIGDDDSPPNDLTSFRRRAFEKRSSIAEEKGEQWTEIVAWEPRAFVYHNFLSKAECEYLIDLAKPYMVKS*******************GTFLKRGQDRIIRGIEKRIADFTFIPMEHGEGIQVLHYEVGQKYDAHYDYFLDEFNTKNGGQRMATLLMYL
**************STLTLVLSMLFMLTIVLLMLLAMGIFYIPIGDDDSP*ND*T****R***********KGEQWTEIVAWEPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTSSGTFLKRGQDRIIRGIEKRIADFTFIPMEHGEGIQVLHYEVGQKYDAHYDYFLDEFNTKNGGQRMATLLMYL
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MVKLRHSRLQAKKWSTLTLVLSMLFMLTIVLLMLLAMGIFYIPIGDDDSPPNDLTSFRRRAFEKRSSIAEEKGEQWTEIVAWEPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTSSGTFLKRGQDRIIRGIEKRIADFTFIPMEHGEGIQVLHYEVGQKYDAHYDYFLDEFNTKNGGQRMATLLMYL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query202 2.2.26 [Sep-21-2011]
Q20065539 Prolyl 4-hydroxylase subu yes no 0.618 0.231 0.356 1e-16
P54001534 Prolyl 4-hydroxylase subu yes no 0.594 0.224 0.346 9e-15
Q10576 559 Prolyl 4-hydroxylase subu no no 0.618 0.223 0.325 1e-13
Q60715534 Prolyl 4-hydroxylase subu yes no 0.594 0.224 0.330 3e-13
Q1RMU3534 Prolyl 4-hydroxylase subu yes no 0.594 0.224 0.322 1e-12
Q5RAG8534 Prolyl 4-hydroxylase subu yes no 0.594 0.224 0.322 1e-12
P13674534 Prolyl 4-hydroxylase subu yes no 0.594 0.224 0.322 1e-12
Q5ZLK5534 Prolyl 4-hydroxylase subu yes no 0.589 0.222 0.305 5e-12
O15460535 Prolyl 4-hydroxylase subu no no 0.589 0.222 0.300 2e-11
P16924516 Prolyl 4-hydroxylase subu no no 0.594 0.232 0.314 3e-11
>sp|Q20065|P4HA2_CAEEL Prolyl 4-hydroxylase subunit alpha-2 OS=Caenorhabditis elegans GN=phy-2 PE=1 SV=1 Back     alignment and function desciption
 Score = 86.7 bits (213), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 46/129 (35%), Positives = 75/129 (58%), Gaps = 4/129 (3%)

Query: 78  EIVAWEPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTSSGTFLKR 137
           EI+ ++P A ++ N +  +E E + +LA P + ++TV +SKTG+ + +  R S   +LK 
Sbjct: 319 EILRFDPLAVLFKNVIHDSEIEVIKELASPKLKRATVQNSKTGELEHATYRISKSAWLKG 378

Query: 138 GQDRIIRGIEKRIADFTFIPMEHGEGIQVLHYEVGQKYDAHYDYFLDE----FNTKNGGQ 193
             D +I  + +RI DFT +     E +QV +Y +G  YD H+D+   E    F T N G 
Sbjct: 379 DLDPVIDRVNRRIEDFTNLNQATSEELQVANYGLGGHYDPHFDFARKEEKNAFKTLNTGN 438

Query: 194 RMATLLMYL 202
           R+AT+L Y+
Sbjct: 439 RIATVLFYM 447
Catalyzes the post-translational formation of 4-hydroxyproline in -Xaa-Pro-Gly- sequences in collagens and other proteins.
Caenorhabditis elegans (taxid: 6239)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: 2
>sp|P54001|P4HA1_RAT Prolyl 4-hydroxylase subunit alpha-1 OS=Rattus norvegicus GN=P4ha1 PE=2 SV=2 Back     alignment and function description
>sp|Q10576|P4HA1_CAEEL Prolyl 4-hydroxylase subunit alpha-1 OS=Caenorhabditis elegans GN=dpy-18 PE=1 SV=2 Back     alignment and function description
>sp|Q60715|P4HA1_MOUSE Prolyl 4-hydroxylase subunit alpha-1 OS=Mus musculus GN=P4ha1 PE=2 SV=2 Back     alignment and function description
>sp|Q1RMU3|P4HA1_BOVIN Prolyl 4-hydroxylase subunit alpha-1 OS=Bos taurus GN=P4HA1 PE=1 SV=1 Back     alignment and function description
>sp|Q5RAG8|P4HA1_PONAB Prolyl 4-hydroxylase subunit alpha-1 OS=Pongo abelii GN=P4HA1 PE=2 SV=1 Back     alignment and function description
>sp|P13674|P4HA1_HUMAN Prolyl 4-hydroxylase subunit alpha-1 OS=Homo sapiens GN=P4HA1 PE=1 SV=2 Back     alignment and function description
>sp|Q5ZLK5|P4HA2_CHICK Prolyl 4-hydroxylase subunit alpha-2 OS=Gallus gallus GN=P4HA2 PE=2 SV=1 Back     alignment and function description
>sp|O15460|P4HA2_HUMAN Prolyl 4-hydroxylase subunit alpha-2 OS=Homo sapiens GN=P4HA2 PE=1 SV=1 Back     alignment and function description
>sp|P16924|P4HA1_CHICK Prolyl 4-hydroxylase subunit alpha-1 OS=Gallus gallus GN=P4HA1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query202
224085946288 predicted protein [Populus trichocarpa] 1.0 0.701 0.752 8e-88
18394842287 2-oxoglutarate (2OG) and Fe(II)-dependen 0.995 0.700 0.752 2e-87
21537370287 putative prolyl 4-hydroxylase, alpha sub 0.995 0.700 0.752 2e-87
297850430287 oxidoreductase [Arabidopsis lyrata subsp 0.995 0.700 0.747 3e-87
255539064289 prolyl 4-hydroxylase alpha subunit, puta 1.0 0.698 0.788 6e-83
356517655290 PREDICTED: prolyl 4-hydroxylase subunit 0.990 0.689 0.7 3e-76
357483927204 Prolyl 4-hydroxylase alpha-2 subunit [Me 0.995 0.985 0.671 7e-75
357483925289 Prolyl 4-hydroxylase alpha-2 subunit [Me 0.995 0.695 0.671 1e-74
225459748288 PREDICTED: prolyl 4-hydroxylase subunit 0.995 0.697 0.758 2e-73
363806698289 uncharacterized protein LOC100806046 [Gl 0.990 0.692 0.658 3e-73
>gi|224085946|ref|XP_002307750.1| predicted protein [Populus trichocarpa] gi|222857199|gb|EEE94746.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  328 bits (841), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 152/202 (75%), Positives = 177/202 (87%)

Query: 1   MVKLRHSRLQAKKWSTLTLVLSMLFMLTIVLLMLLAMGIFYIPIGDDDSPPNDLTSFRRR 60
           MVK+RHSRL  KKWST TLVLSMLFMLT+VL +LL +G F +P+  +DS PNDL S+RR 
Sbjct: 1   MVKVRHSRLHTKKWSTFTLVLSMLFMLTVVLFILLGLGAFSLPVSSEDSSPNDLNSYRRI 60

Query: 61  AFEKRSSIAEEKGEQWTEIVAWEPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTG 120
           A E       ++ EQWTEI++WEPRAF+YHNFLSK ECEYLI+LAKP+M+KSTVVDSKTG
Sbjct: 61  ASESDGDGMGKREEQWTEILSWEPRAFLYHNFLSKEECEYLINLAKPHMMKSTVVDSKTG 120

Query: 121 QSKDSRVRTSSGTFLKRGQDRIIRGIEKRIADFTFIPMEHGEGIQVLHYEVGQKYDAHYD 180
           +SKDSRVRTSSG FL+RG+DR+IR IEKRIADF+FIP+EHGEG+QVLHYEVGQKY+AH+D
Sbjct: 121 RSKDSRVRTSSGMFLRRGRDRVIREIEKRIADFSFIPVEHGEGLQVLHYEVGQKYEAHFD 180

Query: 181 YFLDEFNTKNGGQRMATLLMYL 202
           YFLDEFNTKNGGQR ATLLMYL
Sbjct: 181 YFLDEFNTKNGGQRTATLLMYL 202

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|18394842|ref|NP_564109.1| 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase-like protein [Arabidopsis thaliana] gi|9558598|gb|AAF88161.1|AC026234_12 Contains similarity to a prolyl 4-hydroxylase alpha subunit protein from Gallus gallus gi|212530 [Arabidopsis thaliana] gi|90962978|gb|ABE02413.1| At1g20270 [Arabidopsis thaliana] gi|332191835|gb|AEE29956.1| 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|21537370|gb|AAM61711.1| putative prolyl 4-hydroxylase, alpha subunit [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297850430|ref|XP_002893096.1| oxidoreductase [Arabidopsis lyrata subsp. lyrata] gi|297338938|gb|EFH69355.1| oxidoreductase [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|255539064|ref|XP_002510597.1| prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis] gi|223551298|gb|EEF52784.1| prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356517655|ref|XP_003527502.1| PREDICTED: prolyl 4-hydroxylase subunit alpha-2-like [Glycine max] Back     alignment and taxonomy information
>gi|357483927|ref|XP_003612250.1| Prolyl 4-hydroxylase alpha-2 subunit [Medicago truncatula] gi|355513585|gb|AES95208.1| Prolyl 4-hydroxylase alpha-2 subunit [Medicago truncatula] Back     alignment and taxonomy information
>gi|357483925|ref|XP_003612249.1| Prolyl 4-hydroxylase alpha-2 subunit [Medicago truncatula] gi|355513584|gb|AES95207.1| Prolyl 4-hydroxylase alpha-2 subunit [Medicago truncatula] Back     alignment and taxonomy information
>gi|225459748|ref|XP_002285898.1| PREDICTED: prolyl 4-hydroxylase subunit alpha-2 [Vitis vinifera] gi|302141716|emb|CBI18919.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|363806698|ref|NP_001242522.1| uncharacterized protein LOC100806046 [Glycine max] gi|255647110|gb|ACU24023.1| unknown [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query202
TAIR|locus:2012903287 AT1G20270 [Arabidopsis thalian 0.995 0.700 0.683 1.1e-73
TAIR|locus:2156852289 AT5G66060 [Arabidopsis thalian 0.995 0.695 0.596 5.5e-61
TAIR|locus:2827906291 P4H5 "prolyl 4-hydroxylase 5" 0.811 0.563 0.674 1.1e-57
TAIR|locus:2125329290 AT4G35810 [Arabidopsis thalian 0.811 0.565 0.615 1e-52
TAIR|locus:2144960 298 AT5G18900 [Arabidopsis thalian 0.608 0.412 0.569 5.1e-35
TAIR|locus:2081106 299 P4H2 "prolyl 4-hydroxylase 2" 0.608 0.411 0.544 3.2e-33
TAIR|locus:2088892 288 AT3G28490 [Arabidopsis thalian 0.608 0.427 0.548 1.4e-32
TAIR|locus:2041001283 AT-P4H-1 "P4H isoform 1" [Arab 0.618 0.441 0.574 1.3e-31
TAIR|locus:2125344272 AT4G35820 [Arabidopsis thalian 0.589 0.437 0.510 3.3e-31
UNIPROTKB|Q81LZ8216 BA_4459 "Prolyl 4-hydroxylase, 0.554 0.518 0.446 1.2e-19
TAIR|locus:2012903 AT1G20270 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 744 (267.0 bits), Expect = 1.1e-73, P = 1.1e-73
 Identities = 138/202 (68%), Positives = 165/202 (81%)

Query:     1 MVKLRHSRLQAKKWSTLTLVLSXXXXXXXXXXXXXXXGIFYIPIGDDDSPPNDLTSFRRR 60
             M KLRHSR QA+KWSTL LVL                G+F +PI +D+S P DL+ FRR 
Sbjct:     1 MAKLRHSRFQARKWSTLMLVLFMLFMLTIVLLMLLAFGVFSLPINNDESSPIDLSYFRRA 60

Query:    61 AFEKRSSIAEEKGEQWTEIVAWEPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTG 120
             A E+   + + +G+QWTE+++WEPRAFVYHNFLSK ECEYLI LAKP+MVKSTVVDS+TG
Sbjct:    61 ATERSEGLGK-RGDQWTEVLSWEPRAFVYHNFLSKEECEYLISLAKPHMVKSTVVDSETG 119

Query:   121 QSKDSRVRTSSGTFLKRGQDRIIRGIEKRIADFTFIPMEHGEGIQVLHYEVGQKYDAHYD 180
             +SKDSRVRTSSGTFL+RG+D+II+ IEKRIAD+TFIP +HGEG+QVLHYE GQKY+ HYD
Sbjct:   120 KSKDSRVRTSSGTFLRRGRDKIIKTIEKRIADYTFIPADHGEGLQVLHYEAGQKYEPHYD 179

Query:   181 YFLDEFNTKNGGQRMATLLMYL 202
             YF+DEFNTKNGGQRMAT+LMYL
Sbjct:   180 YFVDEFNTKNGGQRMATMLMYL 201
GO:0005506 "iron ion binding" evidence=IEA
GO:0005739 "mitochondrion" evidence=ISM
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016705 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen" evidence=IEA
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA;ISS
GO:0018401 "peptidyl-proline hydroxylation to 4-hydroxy-L-proline" evidence=ISS
GO:0031418 "L-ascorbic acid binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0005768 "endosome" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=IDA
GO:0005802 "trans-Golgi network" evidence=IDA
TAIR|locus:2156852 AT5G66060 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2827906 P4H5 "prolyl 4-hydroxylase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2125329 AT4G35810 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2144960 AT5G18900 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2081106 P4H2 "prolyl 4-hydroxylase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2088892 AT3G28490 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2041001 AT-P4H-1 "P4H isoform 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2125344 AT4G35820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q81LZ8 BA_4459 "Prolyl 4-hydroxylase, alpha subunit domain protein" [Bacillus anthracis (taxid:1392)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query202
PLN00052 310 PLN00052, PLN00052, prolyl 4-hydroxylase; Provisio 2e-46
smart00702165 smart00702, P4Hc, Prolyl 4-hydroxylase alpha subun 2e-20
>gnl|CDD|177683 PLN00052, PLN00052, prolyl 4-hydroxylase; Provisional Back     alignment and domain information 
 Score =  154 bits (391), Expect = 2e-46
 Identities = 68/123 (55%), Positives = 90/123 (73%)

Query: 80  VAWEPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTSSGTFLKRGQ 139
           V+W+PR FVY  FLS AEC++L+ LAK  + +S V D+K+G+S  S VRTSSG FL + Q
Sbjct: 50  VSWQPRIFVYKGFLSDAECDHLVKLAKKKIQRSMVADNKSGKSVMSEVRTSSGMFLDKRQ 109

Query: 140 DRIIRGIEKRIADFTFIPMEHGEGIQVLHYEVGQKYDAHYDYFLDEFNTKNGGQRMATLL 199
           D ++  IE+RIA +TF+P E+ E IQ+L YE GQKY+ H+DYF D+ N   GG R AT+L
Sbjct: 110 DPVVSRIEERIAAWTFLPEENAENIQILRYEHGQKYEPHFDYFHDKINQALGGHRYATVL 169

Query: 200 MYL 202
           MYL
Sbjct: 170 MYL 172

Length = 310
>gnl|CDD|214780 smart00702, P4Hc, Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 202
PLN00052 310 prolyl 4-hydroxylase; Provisional 100.0
KOG1591289 consensus Prolyl 4-hydroxylase alpha subunit [Amin 100.0
smart00702178 P4Hc Prolyl 4-hydroxylase alpha subunit homologues 99.88
PRK05467 226 Fe(II)-dependent oxygenase superfamily protein; Pr 99.15
PHA02813 354 hypothetical protein; Provisional 98.18
PHA02869 418 C4L/C10L-like gene family protein; Provisional 97.91
PF1366170 2OG-FeII_Oxy_4: 2OG-Fe(II) oxygenase superfamily 97.05
COG3128 229 PiuC Uncharacterized iron-regulated protein [Funct 96.12
KOG3200224 consensus Uncharacterized conserved protein [Funct 94.74
PF13532194 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; 94.7
TIGR02408 277 ectoine_ThpD ectoine hydroxylase. Both ectoine and 93.11
KOG3710 280 consensus EGL-Nine (EGLN) protein [Signal transduc 92.84
COG3751252 EGL-9 Predicted proline hydroxylase [Posttranslati 92.62
PF03336 339 Pox_C4_C10: Poxvirus C4/C10 protein; InterPro: IPR 91.68
KOG3959 306 consensus 2-Oxoglutarate- and iron-dependent dioxy 90.45
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 90.0
PF13640100 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; 89.52
PHA02866 333 Hypothetical protein; Provisional 87.65
PRK15401213 alpha-ketoglutarate-dependent dioxygenase AlkB; Pr 82.23
>PLN00052 prolyl 4-hydroxylase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=2.5e-37  Score=272.53  Aligned_cols=132  Identities=52%  Similarity=0.871  Sum_probs=123.0

Q ss_pred             ccCCceEEEeeeCCCEEEEcCCCCHHHHHHHHHHhcCCcccceeecCCCCcccccceeecceeEeCCCCcHHHHHHHHHH
Q 028903           71 EKGEQWTEIVAWEPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTSSGTFLKRGQDRIIRGIEKRI  150 (202)
Q Consensus        71 ~~~~~kvE~LS~~P~I~l~~dfLs~eEc~~Li~lA~~~l~~S~V~~~~~g~~~~s~~RtS~~awL~~~~d~vv~~L~~Ri  150 (202)
                      ...+.|+|+|||+|+|++||||||++||++||++|++++++|+|.++.+|+...+++|+|+++|++...++++++|++||
T Consensus        41 ~~~~~kve~lS~~P~i~~~~nfLs~~Ecd~Li~la~~~l~~S~v~~~~~g~~~~s~~RTS~~~~l~~~~dpvv~~I~~Ri  120 (310)
T PLN00052         41 PFNASRVKAVSWQPRIFVYKGFLSDAECDHLVKLAKKKIQRSMVADNKSGKSVMSEVRTSSGMFLDKRQDPVVSRIEERI  120 (310)
T ss_pred             CcCCceEEEecCCCCEEEECCcCCHHHHHHHHHhcccccccceeecCCCCccccCCCEEecceeecCCCCHHHHHHHHHH
Confidence            34689999999999999999999999999999999999999999987777778889999999999988899999999999


Q ss_pred             HhhhCCCCCCCccceeeecCCCccccccccCCccccCCCCCCceeEEEEecC
Q 028903          151 ADFTFIPMEHGEGIQVLHYEVGQKYDAHYDYFLDEFNTKNGGQRMATLLMYL  202 (202)
Q Consensus       151 ~~~tgl~~~~~E~lQv~rY~~Gg~Y~~H~D~f~~~~~~~~~g~R~aTvLiYL  202 (202)
                      ++++|+|.++.|++||+||++||+|++|+|+|.+..+...+|+|++|+|+||
T Consensus       121 a~~t~lp~~~~E~lQVlrY~~Gq~Y~~H~D~~~~~~~~~~gg~R~aTvL~YL  172 (310)
T PLN00052        121 AAWTFLPEENAENIQILRYEHGQKYEPHFDYFHDKINQALGGHRYATVLMYL  172 (310)
T ss_pred             HHHhCCCcccCcceEEEecCCCCCCCCCCCccccccccccCCceeEEEEEEe
Confidence            9999999999999999999999999999999986544556899999999998

>KOG1591 consensus Prolyl 4-hydroxylase alpha subunit [Amino acid transport and metabolism] Back     alignment and domain information
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional Back     alignment and domain information
>PHA02813 hypothetical protein; Provisional Back     alignment and domain information
>PHA02869 C4L/C10L-like gene family protein; Provisional Back     alignment and domain information
>PF13661 2OG-FeII_Oxy_4: 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown] Back     alignment and domain information
>KOG3200 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A Back     alignment and domain information
>TIGR02408 ectoine_ThpD ectoine hydroxylase Back     alignment and domain information
>KOG3710 consensus EGL-Nine (EGLN) protein [Signal transduction mechanisms] Back     alignment and domain information
>COG3751 EGL-9 Predicted proline hydroxylase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF03336 Pox_C4_C10: Poxvirus C4/C10 protein; InterPro: IPR005004 This is a family of proteins expressed by members of the Poxviridae Back     alignment and domain information
>KOG3959 consensus 2-Oxoglutarate- and iron-dependent dioxygenase-related proteins [General function prediction only] Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A Back     alignment and domain information
>PHA02866 Hypothetical protein; Provisional Back     alignment and domain information
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query202
2jij_A233 Crystal Structure Of The Apo Form Of Chlamydomonas 6e-39
3gze_A225 Algal Prolyl 4-Hydroxylase Complexed With Zinc And 7e-39
2jig_A224 Crystal Structure Of Chlamydomonas Reinhardtii Prol 7e-39
2v4a_A233 Crystal Structure Of The Semet-Labeled Prolyl-4 Hyd 1e-36
3itq_A216 Crystal Structure Of A Prolyl 4-Hydroxylase From Ba 1e-19
>pdb|2JIJ|A Chain A, Crystal Structure Of The Apo Form Of Chlamydomonas Reinhardtii Prolyl-4 Hydroxylase Type I Length = 233 Back     alignment and structure 
Iteration: 1

 Score =  156 bits (395), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 73/134 (54%), Positives = 102/134 (76%), Gaps = 5/134 (3%)
Query: 74  EQW-TEIV--AWEPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTS 130
           E+W  E+V  +W PRAF+  NFLS  EC+Y+++ A+P MVKS+VVD+++G+S DS +RTS
Sbjct: 16  EEWRGEVVHLSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTS 75
Query: 131 SGTFLKRGQDRIIRGIEKRIADFTFIPMEHGEGIQVLHYEVGQKYDAHYDYFLDEFNT-- 188
           +GT+  +G+D +I  IEKR+A  T IP+E+ EG+QVLHY  GQKY+ HYDYF D  N   
Sbjct: 76  TGTWFAKGEDSVISKIEKRVAQVTMIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGP 135
Query: 189 KNGGQRMATLLMYL 202
           ++GGQR+ T+LMYL
Sbjct: 136 EHGGQRVVTMLMYL 149
>pdb|3GZE|A Chain A, Algal Prolyl 4-Hydroxylase Complexed With Zinc And (Ser-Pro)5 Peptide Substrate Length = 225 Back     alignment and structure
>pdb|2JIG|A Chain A, Crystal Structure Of Chlamydomonas Reinhardtii Prolyl-4 Hydroxylase Type I Complexed With Zinc And Pyridine-2,4- Dicarboxylate Length = 224 Back     alignment and structure
>pdb|2V4A|A Chain A, Crystal Structure Of The Semet-Labeled Prolyl-4 Hydroxylase (P4h) Type I From Green Algae Chlamydomonas Reinhardtii. Length = 233 Back     alignment and structure
>pdb|3ITQ|A Chain A, Crystal Structure Of A Prolyl 4-Hydroxylase From Bacillus Anthracis Length = 216 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query202
2jig_A224 Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A { 3e-55
3itq_A216 Prolyl 4-hydroxylase, alpha subunit domain protei; 1e-50
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A Length = 224 Back     alignment and structure
 Score =  174 bits (442), Expect = 3e-55
 Identities = 70/135 (51%), Positives = 100/135 (74%), Gaps = 2/135 (1%)

Query: 70  EEKGEQWTEIVAWEPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRT 129
           +E+       ++W PRAF+  NFLS  EC+Y+++ A+P MVKS+VVD+++G+S DS +RT
Sbjct: 6   KEEWRGEVVHLSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRT 65

Query: 130 SSGTFLKRGQDRIIRGIEKRIADFTFIPMEHGEGIQVLHYEVGQKYDAHYDYFLDEFNT- 188
           S+GT+  +G+D +I  IEKR+A  T IP+E+ EG+QVLHY  GQKY+ HYDYF D  N  
Sbjct: 66  STGTWFAKGEDSVISKIEKRVAQVTMIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAG 125

Query: 189 -KNGGQRMATLLMYL 202
            ++GGQR+ T+LMYL
Sbjct: 126 PEHGGQRVVTMLMYL 140
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} Length = 216 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query202
2jig_A224 Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A { 99.98
3itq_A216 Prolyl 4-hydroxylase, alpha subunit domain protei; 99.96
3dkq_A 243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 99.63
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 99.42
3kt7_A 633 PKHD-type hydroxylase TPA1; double-stranded beta h 96.62
2iuw_A238 Alkylated repair protein ALKB homolog 3; oxidoredu 95.99
3s57_A204 Alpha-ketoglutarate-dependent dioxygenase ALKB HO; 95.69
3tht_A 345 Alkylated DNA repair protein ALKB homolog 8; struc 94.9
3i3q_A211 Alpha-ketoglutarate-dependent dioxygenase ALKB; be 88.56
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A Back     alignment and structure
Probab=99.98  E-value=2.9e-32  Score=227.94  Aligned_cols=134  Identities=52%  Similarity=0.946  Sum_probs=121.8

Q ss_pred             ccccCCceEEEeeeCCCEEEEcCCCCHHHHHHHHHHhcCCcccceeecCCCCcccccceeecceeEeCCCCcHHHHHHHH
Q 028903           69 AEEKGEQWTEIVAWEPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTSSGTFLKRGQDRIIRGIEK  148 (202)
Q Consensus        69 ~~~~~~~kvE~LS~~P~I~l~~dfLs~eEc~~Li~lA~~~l~~S~V~~~~~g~~~~s~~RtS~~awL~~~~d~vv~~L~~  148 (202)
                      ..++++.|+|+||++|+|++||||||++||++|++++++++.+|++.++.+|....+++|+|+++|++...++++++|++
T Consensus         5 ~~~~~~~k~e~ls~~P~i~~~~~fLs~~Ec~~li~~~~~~~~~s~v~~~~~g~~~~~~~R~s~~~~l~~~~~~~~~~i~~   84 (224)
T 2jig_A            5 LKEEWRGEVVHLSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTSTGTWFAKGEDSVISKIEK   84 (224)
T ss_dssp             --CCCCCCEEEEETTTTEEEETTCSCHHHHHHHHHHHGGGCEECEEEETTTTEEEECSSBCSEEEECCTTCSHHHHHHHH
T ss_pred             cccccCcceEEEeCCCCEEEEcccCCHHHHHHHHHHhhccCeeeeeecCCCCcccccCCEEEeeeEecCCCCHHHHHHHH
Confidence            34788999999999999999999999999999999999999999998876677788899999999999877899999999


Q ss_pred             HHHhhhCCCCCCCccceeeecCCCccccccccCCccccCC--CCCCceeEEEEecC
Q 028903          149 RIADFTFIPMEHGEGIQVLHYEVGQKYDAHYDYFLDEFNT--KNGGQRMATLLMYL  202 (202)
Q Consensus       149 Ri~~~tgl~~~~~E~lQv~rY~~Gg~Y~~H~D~f~~~~~~--~~~g~R~aTvLiYL  202 (202)
                      ||.+++|+|...+|++||+||++||+|++|+|++....+.  ..+++|++|+|+||
T Consensus        85 ri~~~~gl~~~~~e~~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~~~R~~T~l~YL  140 (224)
T 2jig_A           85 RVAQVTMIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGPEHGGQRVVTMLMYL  140 (224)
T ss_dssp             HHHHHHTCCGGGBCCCEEEEEETTCCEEEECCSSCCTTSSSCCCCSCEEEEEEEEC
T ss_pred             HHHHHhCCCcccccceEEEecCCCccccCcccCCCCccccccccCCCeEEEEEEEe
Confidence            9999999999999999999999999999999998764322  45689999999998
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Back     alignment and structure
>3kt7_A PKHD-type hydroxylase TPA1; double-stranded beta helix fold, dioxygenase, iron, mRNP complex, prolyl hydroxylase; HET: AKG; 1.77A {Saccharomyces cerevisiae} PDB: 3kt1_A 3kt4_A 3mgu_A Back     alignment and structure
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10 Back     alignment and structure
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A* Back     alignment and structure
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A* Back     alignment and structure
>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} SCOP: b.82.2.10 PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query202
d2iuwa1210 AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606] 95.68
d2fdia1200 Alkylated DNA repair protein AlkB {Escherichia col 91.08
d2fcta1 308 Syringomycin biosynthesis enzyme 2, SyrB2 {Pseudom 80.71
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: AlkB-like
domain: AlkB homolog 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.68  E-value=0.1  Score=39.77  Aligned_cols=102  Identities=15%  Similarity=0.153  Sum_probs=61.8

Q ss_pred             ceEEEeeeCCC----EEEEcCCCCHHHHHHHHHHhcC--CcccceeecCCCCccccc----------ceeecceeEeC-C
Q 028903           75 QWTEIVAWEPR----AFVYHNFLSKAECEYLIDLAKP--YMVKSTVVDSKTGQSKDS----------RVRTSSGTFLK-R  137 (202)
Q Consensus        75 ~kvE~LS~~P~----I~l~~dfLs~eEc~~Li~lA~~--~l~~S~V~~~~~g~~~~s----------~~RtS~~awL~-~  137 (202)
                      .....++..|.    +.+|+|||+++|.+.|.+....  .+....+...  |+....          .++.+...... .
T Consensus         6 ~~~~~~~~~p~g~~~l~y~p~fLs~~e~~~Ll~~L~~e~~w~~~~~~~~--g~~~~~pR~~~~~~d~~y~y~~~~~~~~~   83 (210)
T d2iuwa1           6 EGVYEISLSPTGVSRVCLYPGFVDVKEADWILEQLCQDVPWKQRTGIRE--DITYQQPRLTAWYGELPYTYSRITMEPNP   83 (210)
T ss_dssp             SEEEEEECCSSSCEEEEEETTSSCHHHHHHHHHHHHHHSCCBCCEEESS--SCEEECSSEEEEEECCCTTSCHHHHCCBS
T ss_pred             cCceEeccCCCCcceEEEECCcCCHHHHHHHHHHHHhhCCccccceecc--CcccceeeeeEEecCcCccccccccccCC
Confidence            45667888885    8999999999999999886532  2332222211  111111          11111111111 1


Q ss_pred             CCcHHHHHHHHHHHhhhCCCCCCCccceeeecCC-CccccccccC
Q 028903          138 GQDRIIRGIEKRIADFTFIPMEHGEGIQVLHYEV-GQKYDAHYDY  181 (202)
Q Consensus       138 ~~d~vv~~L~~Ri~~~tgl~~~~~E~lQv~rY~~-Gg~Y~~H~D~  181 (202)
                      .-.+.++.+.+++...++.+..   ...+.+|.. |+.-.+|.|.
T Consensus        84 ~~~~~l~~l~~~~~~~~~~~~~---~~~ln~Y~~~~~~I~~H~D~  125 (210)
T d2iuwa1          84 HWHPVLRTLKNRIEENTGHTFN---SLLCNLYRNEKDSVDWHSDD  125 (210)
T ss_dssp             SCCHHHHHHHHHHHHHHSCCCC---EEEEEEECSTTCCEEEECCC
T ss_pred             CCcHHHHHHHHhhhhhcCccch---hhhhhccccCCCccccCcCC
Confidence            1247889999999998887643   356777755 5678999995
>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fcta1 b.82.2.9 (A:3-310) Syringomycin biosynthesis enzyme 2, SyrB2 {Pseudomonas syringae pv. syringae [TaxId: 321]} Back     information, alignment and structure