Citrus Sinensis ID: 028939


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-
MGTVIDSHFLALTAIVTVGYQLLFFVITALFKFDKVTDFAGSTNFIIIALLTLILKGSWHFRQVVLTFLAVVWGLRLALFLLMRILNWGEDRRFDEMRSNLGKLAIFWIFQAVWVWTVSLPVTVVNASDRDPSVQAVDVIGWIMWSVGVSIEAIADQQKLSFKNSPENRGKWCNVGFWKYSRHPNYFGEVGPSLLLNVTTS
ccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHcc
ccEEcccHHHHHHHHHHHHHHHHHHHHHHHHccccHEHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEHccccHEEcccccHHHHHHHHHHHEEccc
MGTVIDSHFLALTAIVTVGYQLLFFVITALFkfdkvtdfagsTNFIIIALLTLILKGSWHFRQVVLTFLAVVWGLRLALFLLMRILNWGEDRRFDEMRSNLGKLAIFWIFQAVWVWTVSLPvtvvnasdrdpsvqaVDVIGWIMWSVGVSIEAIADQQklsfknspenrgkwcnvgfwkysrhpnyfgevgpslllnvtts
MGTVIDSHFLALTAIVTVGYQLLFFVITALFKFDKVTDFAGSTNFIIIALLTLILKGSWHFRQVVLTFLAVVWGLRLALFLLMRILNWGEDRRFDEMRSNLGKLAIFWIFQAVWVWTVSLPVTVVNASDRDPSVQAVDVIGWIMWSVGVSIEAIADQQklsfknspenrgKWCNVGFWKYSRhpnyfgevgpslllnvtts
MGTVIDSHFLALTAIVTVGYQLLFFVITALFKFDKVTDFAGSTNFIIIALLTLILKGSWHFRQVVLTFLAVVWGlrlalfllmrilNWGEDRRFDEMRSNLGKLAIFWIFQAVWVWTVSLPVTVVNASDRDPSVQAVDVIGWIMWSVGVSIEAIADQQKLSFKNSPENRGKWCNVGFWKYSRHPNYFGEVGPSLLLNVTTS
***VIDSHFLALTAIVTVGYQLLFFVITALFKFDKVTDFAGSTNFIIIALLTLILKGSWHFRQVVLTFLAVVWGLRLALFLLMRILNWGEDRRFDEMRSNLGKLAIFWIFQAVWVWTVSLPVTVVNASDRDPSVQAVDVIGWIMWSVGVSIEAIADQQKLSFK****NRGKWCNVGFWKYSRHPNYFGEVGPSLLLN****
*GTVIDSHFLALTAIVTVGYQLLFFVITALFKFDKVTDFAGSTNFIIIALLTLILKGSWHFRQVVLTFLAVVWGLRLALFLLMRILNWGEDRRFDEMRSNLGKLAIFWIFQAVWVWTVSLPVTVVNASDRDPSVQAVDVIGWIMWSVGVSIEAIADQQKLSFKNSPENRGKWCNVGFWKYSRHPNYFGEVGPSLLLNVTTS
MGTVIDSHFLALTAIVTVGYQLLFFVITALFKFDKVTDFAGSTNFIIIALLTLILKGSWHFRQVVLTFLAVVWGLRLALFLLMRILNWGEDRRFDEMRSNLGKLAIFWIFQAVWVWTVSLPVTVVNASDRDPSVQAVDVIGWIMWSVGVSIEAIADQQKLSFKNSPENRGKWCNVGFWKYSRHPNYFGEVGPSLLLNVTTS
*GTVIDSHFLALTAIVTVGYQLLFFVITALFKFDKVTDFAGSTNFIIIALLTLILKGSWHFRQVVLTFLAVVWGLRLALFLLMRILNWGEDRRFDEMRSNLGKLAIFWIFQAVWVWTVSLPVTVVNASDRDPSVQAVDVIGWIMWSVGVSIEAIADQQKLSFKNSPENRGKWCNVGFWKYSRHPNYFGEVGPSLLLNVTTS
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooo
ooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MGTVIDSHFLALTAIVTVGYQLLFFVITALFKFDKVTDFAGSTNFIIIALLTLILKGSWHFRQVVLTFLAVVWGLRLALFLLMRILNWGEDRRFDEMRSNLGKLAIFWIFQAVWVWTVSLPVTVVNASDRDPSVQAVDVIGWIMWSVGVSIEAIADQQKLSFKNSPENRGKWCNVGFWKYSRHPNYFGEVGPSLLLNVTTS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query201
297734310 307 unnamed protein product [Vitis vinifera] 0.945 0.618 0.857 2e-94
359491022291 PREDICTED: uncharacterized protein LOC10 0.945 0.652 0.857 2e-94
357118017293 PREDICTED: uncharacterized protein LOC10 0.945 0.648 0.815 8e-91
413933314289 putative domain of unknown function (DUF 0.945 0.657 0.821 2e-90
413933316293 putative domain of unknown function (DUF 0.945 0.648 0.821 2e-90
259490034291 uncharacterized protein LOC100304216 [Ze 0.945 0.652 0.821 2e-90
115454871291 Os03g0708400 [Oryza sativa Japonica Grou 0.945 0.652 0.815 3e-90
310656780192 DUF1295 domain-containing protein [Triti 0.945 0.989 0.794 1e-89
255583469 310 conserved hypothetical protein [Ricinus 0.945 0.612 0.810 2e-89
449439449300 PREDICTED: uncharacterized protein LOC10 0.945 0.633 0.821 1e-88
>gi|297734310|emb|CBI15557.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  350 bits (899), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 163/190 (85%), Positives = 179/190 (94%)

Query: 1   MGTVIDSHFLALTAIVTVGYQLLFFVITALFKFDKVTDFAGSTNFIIIALLTLILKGSWH 60
           MGTVIDSHFLALTAIVTVGYQ LFF+ITAL KFDKVTDFAGSTNF+I+A+LTL+LKG+WH
Sbjct: 1   MGTVIDSHFLALTAIVTVGYQFLFFIITALLKFDKVTDFAGSTNFVILAVLTLVLKGTWH 60

Query: 61  FRQVVLTFLAVVWGLRLALFLLMRILNWGEDRRFDEMRSNLGKLAIFWIFQAVWVWTVSL 120
           FRQVVLT L V+WGLRL +FLLMRIL WGEDRRFDEMRSNLGKLA+FW FQAVWVWTVSL
Sbjct: 61  FRQVVLTLLVVIWGLRLGIFLLMRILQWGEDRRFDEMRSNLGKLAVFWTFQAVWVWTVSL 120

Query: 121 PVTVVNASDRDPSVQAVDVIGWIMWSVGVSIEAIADQQKLSFKNSPENRGKWCNVGFWKY 180
           PVT+VNAS RDPS+QA D+IGWIMWSVG++IEA ADQQKLSFKNSPENRGKWCNVG WKY
Sbjct: 121 PVTIVNASGRDPSLQAADIIGWIMWSVGITIEASADQQKLSFKNSPENRGKWCNVGVWKY 180

Query: 181 SRHPNYFGEV 190
           +RHPNYFGE+
Sbjct: 181 TRHPNYFGEI 190




Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491022|ref|XP_003634205.1| PREDICTED: uncharacterized protein LOC100853969 [Vitis vinifera] Back     alignment and taxonomy information
>gi|357118017|ref|XP_003560756.1| PREDICTED: uncharacterized protein LOC100830682 [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|413933314|gb|AFW67865.1| putative domain of unknown function (DUF1295) containing family protein [Zea mays] Back     alignment and taxonomy information
>gi|413933316|gb|AFW67867.1| putative domain of unknown function (DUF1295) containing family protein [Zea mays] Back     alignment and taxonomy information
>gi|259490034|ref|NP_001159138.1| uncharacterized protein LOC100304216 [Zea mays] gi|223942193|gb|ACN25180.1| unknown [Zea mays] gi|413933315|gb|AFW67866.1| putative domain of unknown function (DUF1295) containing family protein [Zea mays] Back     alignment and taxonomy information
>gi|115454871|ref|NP_001051036.1| Os03g0708400 [Oryza sativa Japonica Group] gi|13937298|gb|AAK50129.1|AC087797_14 unknown protein [Oryza sativa Japonica Group] gi|108710687|gb|ABF98482.1| expressed protein [Oryza sativa Japonica Group] gi|113549507|dbj|BAF12950.1| Os03g0708400 [Oryza sativa Japonica Group] gi|125545445|gb|EAY91584.1| hypothetical protein OsI_13219 [Oryza sativa Indica Group] gi|125587653|gb|EAZ28317.1| hypothetical protein OsJ_12291 [Oryza sativa Japonica Group] gi|215694680|dbj|BAG89871.1| unnamed protein product [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|310656780|gb|ADP02210.1| DUF1295 domain-containing protein [Triticum aestivum] Back     alignment and taxonomy information
>gi|255583469|ref|XP_002532493.1| conserved hypothetical protein [Ricinus communis] gi|223527792|gb|EEF29892.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|449439449|ref|XP_004137498.1| PREDICTED: uncharacterized protein LOC101219154 [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query201
TAIR|locus:2027774 302 AT1G73650 [Arabidopsis thalian 0.945 0.629 0.726 1.5e-74
TAIR|locus:2194090 305 AT1G18180 [Arabidopsis thalian 0.945 0.622 0.710 6.5e-74
UNIPROTKB|G4N6G0 335 MGG_03731 "Uncharacterized pro 0.930 0.558 0.438 1.7e-41
FB|FBgn0035914 316 CG6282 [Drosophila melanogaste 0.930 0.591 0.424 3.4e-38
ZFIN|ZDB-GENE-030131-3630288 si:ch211-210c8.6 "si:ch211-210 0.900 0.628 0.408 3.1e-35
UNIPROTKB|Q74AM9256 GSU2323 "Uncharacterized prote 0.885 0.695 0.329 7e-22
TIGR_CMR|GSU_2323256 GSU_2323 "membrane protein, pu 0.885 0.695 0.329 7e-22
DICTYBASE|DDB_G0279829267 DDB_G0279829 "DUF1295 family p 0.840 0.632 0.311 1.7e-20
UNIPROTKB|Q722V9257 LMOf2365_0620 "Putative membra 0.870 0.680 0.278 1.2e-17
UNIPROTKB|G4NC19328 MGG_00459 "Uncharacterized pro 0.691 0.423 0.326 5.2e-15
TAIR|locus:2027774 AT1G73650 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 752 (269.8 bits), Expect = 1.5e-74, P = 1.5e-74
 Identities = 138/190 (72%), Positives = 154/190 (81%)

Query:     1 MGTVIDSHFLALTAIVTVGYQLLFFVITALFKFDKVTDFAGSTNFIIIALLTLILKGSWH 60
             MGTV+DSHFLALTAIVTV YQ +FFVITALFKFD+VTDFAGSTNF+I+A+LTL+LK SWH
Sbjct:     1 MGTVLDSHFLALTAIVTVIYQFIFFVITALFKFDQVTDFAGSTNFVILAVLTLVLKASWH 60

Query:    61 FRQVVLTFLAVVWGXXXXXXXXXXXXNWGEDRRFDEMRSNLGKLAIFWIFQAVWVWTVSL 120
             FRQ+VLT L VVWG             WGEDRRFDE R N+ +L IFW  QAVWVWTVSL
Sbjct:    61 FRQIVLTLLVVVWGLRLGIFLLMRILQWGEDRRFDEQRGNIVRLIIFWTLQAVWVWTVSL 120

Query:   121 PVTVVNASDRDPSVQAVDVIGWIMWSVGVSIEAIADQQKLSFKNSPENRGKWCNVGFWKY 180
             P+T+VNASD   S++  DVIGW MW  G  IEA ADQQKLSFKNSPENRGKWC+VG WKY
Sbjct:   121 PLTLVNASDGGGSLKPADVIGWTMWVFGFLIEAAADQQKLSFKNSPENRGKWCDVGVWKY 180

Query:   181 SRHPNYFGEV 190
             SRHPNYFGE+
Sbjct:   181 SRHPNYFGEM 190




GO:0005737 "cytoplasm" evidence=IEA
GO:0005739 "mitochondrion" evidence=ISM
GO:0006629 "lipid metabolic process" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM
GO:0016021 "integral to membrane" evidence=IEA
GO:0016627 "oxidoreductase activity, acting on the CH-CH group of donors" evidence=IEA
GO:0005886 "plasma membrane" evidence=IDA
GO:0005773 "vacuole" evidence=IDA
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=IDA
GO:0009627 "systemic acquired resistance" evidence=RCA
GO:0009744 "response to sucrose stimulus" evidence=RCA
GO:0009813 "flavonoid biosynthetic process" evidence=RCA
GO:0010224 "response to UV-B" evidence=RCA
GO:0031347 "regulation of defense response" evidence=RCA
GO:0005783 "endoplasmic reticulum" evidence=IDA
TAIR|locus:2194090 AT1G18180 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|G4N6G0 MGG_03731 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
FB|FBgn0035914 CG6282 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-3630 si:ch211-210c8.6 "si:ch211-210c8.6" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q74AM9 GSU2323 "Uncharacterized protein" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_2323 GSU_2323 "membrane protein, putative" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0279829 DDB_G0279829 "DUF1295 family protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|Q722V9 LMOf2365_0620 "Putative membrane protein" [Listeria monocytogenes serotype 4b str. F2365 (taxid:265669)] Back     alignment and assigned GO terms
UNIPROTKB|G4NC19 MGG_00459 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query201
pfam06966235 pfam06966, DUF1295, Protein of unknown function (D 3e-70
COG3752272 COG3752, COG3752, Steroid 5-alpha reductase family 7e-29
>gnl|CDD|219244 pfam06966, DUF1295, Protein of unknown function (DUF1295) Back     alignment and domain information
 Score =  212 bits (543), Expect = 3e-70
 Identities = 78/173 (45%), Positives = 109/173 (63%), Gaps = 6/173 (3%)

Query: 24  FFVITALFKFDKVTDFAGSTNFIIIALLTLILKGSWHFRQVVLTFLAVVWGLRLALFLLM 83
           F++I+       + D A    F+I+A+LT +L      R++++T L  +WGLRL   LL 
Sbjct: 1   FWLISRRTGNYGLVDVAWGGGFVILAVLTALLSEGATLRRMLVTLLVTLWGLRLGWHLLR 60

Query: 84  RILNWGEDRRFDEMRSNLGK------LAIFWIFQAVWVWTVSLPVTVVNASDRDPSVQAV 137
           R   WGED R+ ++R N GK      L IF+I QAV ++ VSLPV + NAS  +P++ A 
Sbjct: 61  RTWGWGEDYRYVDLRKNWGKWPYLLSLLIFFILQAVLLYIVSLPVYLANASGPNPALGAW 120

Query: 138 DVIGWIMWSVGVSIEAIADQQKLSFKNSPENRGKWCNVGFWKYSRHPNYFGEV 190
           D+IG  +W VG+  EA+ADQQ  +FK  P N+GK C+ G W+YSRHPNYFGE 
Sbjct: 121 DIIGIAIWLVGIGFEALADQQLWAFKGDPANKGKVCDTGLWRYSRHPNYFGEA 173


This family contains a number of bacterial and eukaryotic proteins of unknown function that are approximately 300 residues long. Length = 235

>gnl|CDD|226275 COG3752, COG3752, Steroid 5-alpha reductase family enzyme [General function prediction only] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 201
COG3752272 Steroid 5-alpha reductase family enzyme [General f 100.0
PF06966235 DUF1295: Protein of unknown function (DUF1295); In 100.0
KOG4650311 consensus Predicted steroid reductase [General fun 100.0
PF01222432 ERG4_ERG24: Ergosterol biosynthesis ERG4/ERG24 fam 99.5
KOG1435428 consensus Sterol reductase/lamin B receptor [Lipid 99.4
KOG1638257 consensus Steroid reductase [Lipid transport and m 99.28
PLN02392260 probable steroid reductase DET2 99.08
PF02544150 Steroid_dh: 3-oxo-5-alpha-steroid 4-dehydrogenase 99.0
PLN02560308 enoyl-CoA reductase 98.8
PLN03164323 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal 98.72
PF04191106 PEMT: Phospholipid methyltransferase ; InterPro: I 98.59
PF0414094 ICMT: Isoprenylcysteine carboxyl methyltransferase 98.53
COG2020187 STE14 Putative protein-S-isoprenylcysteine methylt 98.36
COG1755172 Uncharacterized protein conserved in bacteria [Fun 97.96
KOG2628201 consensus Farnesyl cysteine-carboxyl methyltransfe 97.37
KOG1640304 consensus Predicted steroid reductase [Lipid trans 96.78
KOG1639297 consensus Steroid reductase required for elongatio 95.26
>COG3752 Steroid 5-alpha reductase family enzyme [General function prediction only] Back     alignment and domain information
Probab=100.00  E-value=3e-54  Score=363.30  Aligned_cols=193  Identities=28%  Similarity=0.472  Sum_probs=179.8

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHhccCcEeecccchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 028939            5 IDSHFLALTAIVTVGYQLLFFVITALFKFDKVTDFAGSTNFIIIALLTLILKGSWHFRQVVLTFLAVVWGLRLALFLLMR   84 (201)
Q Consensus         5 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~w~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~iW~~RL~~~l~~R   84 (201)
                      ..+++....+++.++++.+.|++|..+||.+++|..||.++++.++..+..+.++..|+++++.++++||+||+.|+.+|
T Consensus        11 ~~~~~~~v~al~~~v~~~~~w~vs~~tg~~~~VD~~Wg~~~~~~a~~~~l~~~~~~~r~~l~~~LvtlWs~RL~~hl~rR   90 (272)
T COG3752          11 SNLMVIVVVALALAVLFAVAWAVSRRTGNYSWVDAVWGGGFVAVAVVLALLGEGDPRRRWLLLFLVTLWSLRLGWHLYRR   90 (272)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCcceeehhccchHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            35778888899999999999999999999999999999999999999888877777899999999999999999999999


Q ss_pred             hcCcCcchhHHHHHHhhh-------hHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 028939           85 ILNWGEDRRFDEMRSNLG-------KLAIFWIFQAVWVWTVSLPVTVVNASDRDPSVQAVDVIGWIMWSVGVSIEAIADQ  157 (201)
Q Consensus        85 ~~~~~eD~Ry~~~r~~~~-------~~~~~~~~Q~~~~~~~slP~~~~~~~~~~~~l~~~~~ig~~l~~~G~~~E~~AD~  157 (201)
                      .+++|||+||.++|++++       +++.+|.+|++..+++++|+++++..+ +++..+.|++|++++++|+.+|+++|+
T Consensus        91 ~~~~geD~RY~~l~~~wg~t~~~~~~l~~vf~lQ~ll~~ilalpi~~a~~~~-~~~~~~~d~~g~~iwivg~~fE~lgD~  169 (272)
T COG3752          91 TRGKGEDPRYVNLRQRWGKTIYPLKALFIVFGLQALLLFILALPIYLAALNG-PREFGWWDVIGLAIWIVGIVFEALGDA  169 (272)
T ss_pred             hcCCCCChHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCcHHHHHHHHHHHHHHHHHHhhHH
Confidence            999999999999999876       356789999999999999999987653 556899999999999999999999999


Q ss_pred             HHHHhcCCCCCCCccccccccccccccchHHHHHHHhhhhc
Q 028939          158 QKLSFKNSPENRGKWCNVGFWKYSRHPNYFGEVGPSLLLNV  198 (201)
Q Consensus       158 Ql~~Fr~~~~~~gk~~~~GLw~ysRHPNYfGE~l~~l~~~l  198 (201)
                      |++.||++|+||||+|++||||||||||||||+|.|+++-+
T Consensus       170 QL~~Fk~~P~nkgkll~~GLWr~tRHPNYFgE~l~Wwg~~L  210 (272)
T COG3752         170 QLWVFKKDPRNKGKLLDTGLWRWTRHPNYFGEALVWWGFYL  210 (272)
T ss_pred             HHHHHHhChhhccccccccceecccCcchHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999998754



>PF06966 DUF1295: Protein of unknown function (DUF1295); InterPro: IPR010721 This family contains a number of bacterial and eukaryotic proteins of unknown function that are approximately 300 residues long Back     alignment and domain information
>KOG4650 consensus Predicted steroid reductase [General function prediction only] Back     alignment and domain information
>PF01222 ERG4_ERG24: Ergosterol biosynthesis ERG4/ERG24 family; InterPro: IPR001171 The two fungal enzymes, C-14 sterol reductase (gene ERG24 in budding yeast and erg3 in Neurospora crassa) and C-24(28) sterol reductase (gene ERG4 in budding yeast and sts1 in fission yeast), are involved in ergosterol biosynthesis Back     alignment and domain information
>KOG1435 consensus Sterol reductase/lamin B receptor [Lipid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>KOG1638 consensus Steroid reductase [Lipid transport and metabolism] Back     alignment and domain information
>PLN02392 probable steroid reductase DET2 Back     alignment and domain information
>PF02544 Steroid_dh: 3-oxo-5-alpha-steroid 4-dehydrogenase ; InterPro: IPR001104 Synonym(s): Steroid 5-alpha-reductase 3-oxo-5-alpha-steroid 4-dehydrogenases, 1 Back     alignment and domain information
>PLN02560 enoyl-CoA reductase Back     alignment and domain information
>PLN03164 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal domain containing protein; Provisional Back     alignment and domain information
>PF04191 PEMT: Phospholipid methyltransferase ; InterPro: IPR007318 The Saccharomyces cerevisiae (Baker's yeast) phospholipid methyltransferase (2 Back     alignment and domain information
>PF04140 ICMT: Isoprenylcysteine carboxyl methyltransferase (ICMT) family ; InterPro: IPR007269 The isoprenylcysteine o-methyltransferase (2 Back     alignment and domain information
>COG2020 STE14 Putative protein-S-isoprenylcysteine methyltransferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG1755 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>KOG2628 consensus Farnesyl cysteine-carboxyl methyltransferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1640 consensus Predicted steroid reductase [Lipid transport and metabolism] Back     alignment and domain information
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query201
4a2n_B194 Isoprenylcysteine carboxyl methyltransferase; memb 99.59
>4a2n_B Isoprenylcysteine carboxyl methyltransferase; membrane protein, RAS and RHO gtpases signallin; HET: SAH PLM CDL; 3.40A {Methanosarcina acetivorans} Back     alignment and structure
Probab=99.59  E-value=4.8e-15  Score=121.66  Aligned_cols=65  Identities=12%  Similarity=0.114  Sum_probs=57.0

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHh-cC--CCCCCCccccccccccccccchHHHHHHHhhhhcc
Q 028939          135 QAVDVIGWIMWSVGVSIEAIADQQKLSF-KN--SPENRGKWCNVGFWKYSRHPNYFGEVGPSLLLNVT  199 (201)
Q Consensus       135 ~~~~~ig~~l~~~G~~~E~~AD~Ql~~F-r~--~~~~~gk~~~~GLw~ysRHPNYfGE~l~~l~~~l~  199 (201)
                      .+...+|++++++|+.++..||.|+.++ +.  +++++++++++|+|+|||||||+||++.++++++.
T Consensus        75 ~~~~~~G~~l~l~G~~l~~~a~~~Lg~~f~~~~~~~~~~~Lvt~G~y~~vRHP~Y~G~~l~~~g~~l~  142 (194)
T 4a2n_B           75 DSIRLFALIVTFLNIGLFTKIHKDLGNNWSAILEIKDGHKLVKEGIYKNIRHPMYAHLWLWVITQGII  142 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHGGGCCSSCCEETTCCCCCSSTTTTBSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCeeeecCcchhccCccHHHHHHHHHHHHHH
Confidence            4678899999999999999999998654 43  34567889999999999999999999999998874




Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00