Citrus Sinensis ID: 028943

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-
Protein Sequence
MQLSTNFTASPFRSQNHLFNNLSPTSFLHKSLFLSRPTKTLQNLLFSNPKSSQKKLLRTSTINASLLEAPLLWAGRLCVYYALLKAGLAGSQANPLVSDLESGGVTGSEGADLGFSKWLENIKGKPDKEAADKRKLVSKWHPTTKGTLRRNYRVPSKSEGRRLLKAIASLLSDDDHFTDATSHKVFFTSRQHITLLNIFGI
Secondary Structure (PSIPRED)
cccccEEEcccccccccccccccccccccccccccccccccccEEEEcccccccccEEccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHccccHHHHHHccccccccccccccEEEEEEcccHHHHHHHHHHHHHHHccccccccccccccEEEEccEEEEEEEccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEcccccccccccccccccccccccccccccHHHHccEEccccHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEcccccccccccccccccHHHHHHHHccccHHHHHcccccccccccccccccEccccccccHHHHHHHHHHHHHHccccccEEcccccccHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mqlstnftaspfrsqnhlfnnlsptsflhkslflsrptktlqnllfsnpkssqkkLLRTSTINASLLEAPLLWAGRLCVYYALLKAglagsqanplvsdlesggvtgsegadlgFSKWLEnikgkpdkeaadkrklvskwhpttkgtlrrnyrvpsksEGRRLLKAIASLlsdddhftdatshkvFFTSRQHITLLNIFGI
Flexible Loop (DISEMBL)
mqlstnftaspfrsqnHLFNNLSPTSFLHKSLFLSRPTKTLQNLLfsnpkssqkklLRTSTINASLLEAPLLWAGRLCVYYALLKAGLAGSQANPLVSDLESGGVTGSEGADLGFSKWLENIKgkpdkeaadkrklvskwhpttkgtlrrnyrvpskseGRRLLKAIASLLSDDDHFTDATSHKVFFTSRQHITLLNIFGI
Low Complexity Region (SEG)
MQLSTNFTASPFRSQNHLFNNLSPTSFLHKSLFLSRPTKTLQNLLFSNPKSSQKKLLRTSTINASLLEAPLLWAGRLCVYYALLKAGLAGSQANPLVSDLESGGVTGSEGADLGFSKWLENIKGKPDKEAADKRKLVSKWHPTTKGTLRRNYRVPSKSEGRRLLKAIASLLSDDDHFTDATSHKVFFTSRQHITLLNIFGI
Disordered region (IsUnstruct)
******************FNNL*PTSFLHKSLFLSRPTKTLQNLLF**********LRTSTINASLLEAPLLWAGRLCVYYALLKAGLAGSQ********************LGFSKWLE******************************************LLKAIASLLSDDDHFTDATSHKVFFTSRQHITLLNIF**
Disordered Region (DISOPRED)
****************HLFNNLSPTSFLHKSLFLSRPTKTLQNLLFSN************TINASLLEAPLLWAGRLCVYYALLKAGLAGSQANPLVS*LE********GADLGFSKWL********************WHPTTKGTL***************LKAIASLLSDDDHFTDATSHKVFFTSRQHITLLNIFGI
Disordered Region (DISEMBL)
********ASPFRSQNHLFNNLSPTSFLHKSLFLSRPTKTLQNLLFSNPKSSQKKLLRTSTINASLLEAPLLWAGRLCVYYALLKAGLAGSQANPLVSDLESGGVTGSEGADLGFSKWLENIKGKPDKEAADKRKLVSKWHPTTKGTLRRNYRVPSKSEGRRLLKAIASLLSDDDHFTDATSHKVFFTSRQHITLLNIFGI
Disordered Region (DISPRO)
*QLSTNFTASPFRSQNHLFNNLSPTSFLHKSLFLSRPTKTLQNLLFSNPKSSQK**LRTSTINASLLEAPLLWAGRLCVYYALLKAGLAGSQANPLV*************ADLGFSKWLENIKGKPDKE**D*RKLVSKWHPT*KGTLRRNYRVPSKSEGRRLLKAIASLLSDDDHFTDATSHKVFFTSRQHITLLNIFGI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MQLSTNFTASPFRSQNHLFNNLSPTSFLHKSLFLSRPTKTLQNLLFSNPKSSQKKLLRTSTINASLLEAPLLWAGRLCVYYALLKAGLAGSQANPLVSDLESGGVTGSEGADLGFSKWLENIKGKPDKEAADKRKLVSKWHPTTKGTLRRNYRVPSKSEGRRLLKAIASLLSDDDHFTDATSHKVFFTSRQHITLLNIFGI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	201
255580074	256	conserved hypothetical protein [Ricinus	0.845	0.664	0.675	1e-59
297815360	248	hypothetical protein ARALYDRAFT_484754 [	0.825	0.669	0.651	6e-54
18406975	249	uncharacterized protein [Arabidopsis tha	0.880	0.710	0.614	3e-53
225435688	230	PREDICTED: uncharacterized protein LOC10	0.756	0.660	0.680	1e-52
356527046	258	PREDICTED: uncharacterized protein LOC10	0.825	0.643	0.653	2e-52
224076012	256	predicted protein [Populus trichocarpa]	0.910	0.714	0.628	6e-52
356569804	258	PREDICTED: uncharacterized protein LOC10	0.840	0.655	0.625	1e-50
449462577	258	PREDICTED: uncharacterized protein LOC10	0.756	0.589	0.672	1e-49
388499404	247	unknown [Lotus japonicus]	0.601	0.489	0.809	4e-49
388507382	248	unknown [Lotus japonicus]	0.601	0.487	0.809	6e-49

>gi|255580074|ref|XP_002530870.1| conserved hypothetical protein [Ricinus communis] gi|223529559|gb|EEF31510.1| conserved hypothetical protein [Ricinus communis]

 Score =  234 bits (598), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 123/182 (67%), Positives = 143/182 (78%), Gaps = 12/182 (6%)

Query: 12  FRSQNHLFNN---LSPTSFLHKSLFLS------RPTKTLQNLLFSNPKSSQKKLLRTSTI 62
           F+S N  +NN   ++PTS L KSLF +       PTKTL+  L+   +S   +   T+T 
Sbjct: 14  FQSNN--YNNTKIINPTSLLPKSLFPTFDTNGNHPTKTLKRFLYLTKRSFATRKTVTTT- 70

Query: 63  NASLLEAPLLWAGRLCVYYALLKAGLAGSQANPLVSDLESGGVTGSEGADLGFSKWLENI 122
           NASLLE P+LWAGRLC++YALLK+GLAGS+ NPLVS L+  G +  E  DLGFSKWLENI
Sbjct: 71  NASLLETPVLWAGRLCIFYALLKSGLAGSKTNPLVSGLDGDGESAVESGDLGFSKWLENI 130

Query: 123 KGKPDKEAADKRKLVSKWHPTTKGTLRRNYRVPSKSEGRRLLKAIASLLSDDDHFTDATS 182
           +GKPDKEAAD+RKLVSKWHPTTKGTLRRNYRVPSKSEGRRLLKAIASLLSDDDHF +ATS
Sbjct: 131 QGKPDKEAADRRKLVSKWHPTTKGTLRRNYRVPSKSEGRRLLKAIASLLSDDDHFIEATS 190

Query: 183 HK 184
           HK
Sbjct: 191 HK 192

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297815360|ref|XP_002875563.1| hypothetical protein ARALYDRAFT_484754 [Arabidopsis lyrata subsp. lyrata] gi|297321401|gb|EFH51822.1| hypothetical protein ARALYDRAFT_484754 [Arabidopsis lyrata subsp. lyrata]

 Score =  216 bits (549), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 116/178 (65%), Positives = 138/178 (77%), Gaps = 12/178 (6%)

Query: 12  FRSQNHL--FNNLSPTSFL-HKSLFLSRPTKTLQNLLFSNPKSSQKKLLRTSTINASLLE 68
           FRSQ+ +   +N +P+ FL  KS+F    +K   +  F  PK      +   +  ASLLE
Sbjct: 14  FRSQSTIPTLSNSNPSCFLLPKSIFPG--SKLTLHRFFRYPKK-----ISNGSARASLLE 66

Query: 69  APLLWAGRLCVYYALLKAGLAGSQANPLVSDLESGGV-TGSEGADLGFSKWLENIKG-KP 126
            P+LWAGR+CV+YAL+KAG AGS++NP+VS L+SGGV    +GADLGFSKWL+NIKG KP
Sbjct: 67  TPVLWAGRICVFYALVKAGFAGSKSNPIVSGLDSGGVDVEDDGADLGFSKWLQNIKGNKP 126

Query: 127 DKEAADKRKLVSKWHPTTKGTLRRNYRVPSKSEGRRLLKAIASLLSDDDHFTDATSHK 184
           DK+AADKRKLVSKWHPTTKGTLRRNYR+PSKSEG RLLKAIASLLSDDDHF DATSHK
Sbjct: 127 DKDAADKRKLVSKWHPTTKGTLRRNYRIPSKSEGNRLLKAIASLLSDDDHFRDATSHK 184

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18406975|ref|NP_566858.1| uncharacterized protein [Arabidopsis thaliana] gi|9294365|dbj|BAB02262.1| unnamed protein product [Arabidopsis thaliana] gi|15292709|gb|AAK92723.1| unknown protein [Arabidopsis thaliana] gi|21281097|gb|AAM45104.1| unknown protein [Arabidopsis thaliana] gi|332644183|gb|AEE77704.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  213 bits (543), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 118/192 (61%), Positives = 144/192 (75%), Gaps = 15/192 (7%)

Query: 1   MQLS--TNFTASPFRSQNHL--FNNLSPTSFL-HKSLFLSRPTKTLQNLLFSNPKSSQKK 55
           MQLS     + S FRSQ+ +   +N +P+  L  KS+F    +K   + +F  PK     
Sbjct: 1   MQLSLVQVSSVSNFRSQSTIPTLSNSNPSCLLLQKSIFPG--SKLTLHRIFRYPKK---- 54

Query: 56  LLRTSTINASLLEAPLLWAGRLCVYYALLKAGLAGSQANPLVSDLESGGVTGS--EGADL 113
            +   +  ASLLE P+LWAGR+CV+YAL+KAG AGS++NP+VS L++GGV     +GADL
Sbjct: 55  -ISNGSTRASLLETPILWAGRICVFYALVKAGFAGSKSNPIVSGLDTGGVDVEYDDGADL 113

Query: 114 GFSKWLENIKG-KPDKEAADKRKLVSKWHPTTKGTLRRNYRVPSKSEGRRLLKAIASLLS 172
           GFSKWL+NIKG KPDK+AADKRKLVSKWHPTTKGTLRRNYR+PSK+EG RLLKAIASLLS
Sbjct: 114 GFSKWLQNIKGNKPDKDAADKRKLVSKWHPTTKGTLRRNYRIPSKAEGNRLLKAIASLLS 173

Query: 173 DDDHFTDATSHK 184
           DDDHF DATSHK
Sbjct: 174 DDDHFRDATSHK 185

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225435688|ref|XP_002285688.1| PREDICTED: uncharacterized protein LOC100250156 [Vitis vinifera] gi|297746432|emb|CBI16488.3| unnamed protein product [Vitis vinifera]

 Score =  211 bits (538), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 113/166 (68%), Positives = 125/166 (75%), Gaps = 14/166 (8%)

Query: 23  SPTSFLHKSLFLS----RPTKTLQNLLFSNPKSSQKKLLRTSTINASLLEAPLLWAGRLC 78
           SP+S      FL      PTKTL  L    P         T + +ASLLEAP+LWA R+C
Sbjct: 11  SPSSVNSSQTFLPGFGISPTKTLVYLRSRTP---------TGSTHASLLEAPVLWASRIC 61

Query: 79  VYYALLKAGLAGSQANPLVSDLESGGVTGSEGADLGFSKWLENIKGKPDKEAADKRKLVS 138
           V+YALLKAGLAGSQANP VSDLES G  G    DLGFSKWLE+++  P+KEA+DKRKLVS
Sbjct: 62  VFYALLKAGLAGSQANPFVSDLESDG-NGDGAGDLGFSKWLESLQRNPEKEASDKRKLVS 120

Query: 139 KWHPTTKGTLRRNYRVPSKSEGRRLLKAIASLLSDDDHFTDATSHK 184
           KWHPTTKGTLRRNYRVPSKSEGRRLLKAIASLLSDDDHF DA+SHK
Sbjct: 121 KWHPTTKGTLRRNYRVPSKSEGRRLLKAIASLLSDDDHFIDASSHK 166

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527046|ref|XP_003532125.1| PREDICTED: uncharacterized protein LOC100785008 [Glycine max]

 Score =  211 bits (536), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 115/176 (65%), Positives = 129/176 (73%), Gaps = 10/176 (5%)

Query: 25  TSFLHKSLFLSRPTKTLQNLLFSNPKSSQKKLLRTS----TINASLLEAPLLWAGRLCVY 80
            + L KSLF    +  L+ L+F +  SS     R      ++NASL+EAP+LWAGRLC++
Sbjct: 27  VTLLPKSLFPCGISLKLKGLVFWSKSSSVCGRRRVGVGSISVNASLVEAPVLWAGRLCIF 86

Query: 81  YALLKAGLAGSQANPLVSDLESGGVTGSEGA-----DLGFSKWLENIKGKPDKEAADKRK 135
           YALLKAGLAGSQANPLVSDLE G  T  E A     DLGFSKW + I GKP KEAA+ RK
Sbjct: 87  YALLKAGLAGSQANPLVSDLEIGD-TNDESAPAAATDLGFSKWAQTILGKPAKEAANGRK 145

Query: 136 LVSKWHPTTKGTLRRNYRVPSKSEGRRLLKAIASLLSDDDHFTDATSHKVFFTSRQ 191
           LVSKWHPTTKGTLRRNYRVPSK EGRRLLKAIASLLSDDDHF DATSHK     R+
Sbjct: 146 LVSKWHPTTKGTLRRNYRVPSKLEGRRLLKAIASLLSDDDHFVDATSHKGCQIRRE 201

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224076012|ref|XP_002304872.1| predicted protein [Populus trichocarpa] gi|118488609|gb|ABK96117.1| unknown [Populus trichocarpa] gi|222842304|gb|EEE79851.1| predicted protein [Populus trichocarpa]

 Score =  209 bits (532), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 120/191 (62%), Positives = 145/191 (75%), Gaps = 8/191 (4%)

Query: 1   MQLSTNFTASPFRSQN-HLFNN-LSPTSFLHKSLF--LSRPTKTLQNLLFSNPKSSQKKL 56
           + L      SPF+S+    FN+ +  T+ L KSLF     P+KT   L F N  +  +KL
Sbjct: 3   LSLVQTIYTSPFQSKTLTRFNSVIKSTTLLPKSLFPTFDCPSKTFSRLFF-NGNTRDRKL 61

Query: 57  LRTS--TINASLLEAPLLWAGRLCVYYALLKAGLAGSQANPLVSDLESGGVTGSEGA-DL 113
              +  T++ASL+EAP+LW GRLC++YALLKAGLAGS+ANPLVS L+ GGV G   + DL
Sbjct: 62  TAGASFTVHASLIEAPVLWVGRLCIFYALLKAGLAGSEANPLVSGLDGGGVGGGAESGDL 121

Query: 114 GFSKWLENIKGKPDKEAADKRKLVSKWHPTTKGTLRRNYRVPSKSEGRRLLKAIASLLSD 173
           GFSKW+E I+GKPDKEAADKRKLVSKWHPTTKGTLRRNYRVPSKSEG+R LKAIA+LLS+
Sbjct: 122 GFSKWIEAIQGKPDKEAADKRKLVSKWHPTTKGTLRRNYRVPSKSEGQRRLKAIAALLSE 181

Query: 174 DDHFTDATSHK 184
           DD+F DATSHK
Sbjct: 182 DDYFVDATSHK 192

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569804|ref|XP_003553086.1| PREDICTED: uncharacterized protein LOC100801846 [Glycine max]

 Score =  204 bits (520), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 112/179 (62%), Positives = 129/179 (72%), Gaps = 10/179 (5%)

Query: 23  SPTSFLHKSLFLSRPTKTLQNLLFSNPKSS-------QKKLLRTSTINASLLEAPLLWAG 75
           SP + L KSLF    +  L+ L+F    SS       ++  + + ++NASL+EAP+LWAG
Sbjct: 23  SPVTLLPKSLFPCGISLKLKGLVFWCKSSSVCGRRRRRRVRVGSISVNASLVEAPVLWAG 82

Query: 76  RLCVYYALLKAGLAGSQANPLVSDLESGGVTGSEGA---DLGFSKWLENIKGKPDKEAAD 132
           RL ++YALLKAGLAGSQANPLV DLE G       A   DLGFSKW + I GKP KEAA+
Sbjct: 83  RLFIFYALLKAGLAGSQANPLVLDLEIGDTNDESAAAATDLGFSKWAQAILGKPPKEAAN 142

Query: 133 KRKLVSKWHPTTKGTLRRNYRVPSKSEGRRLLKAIASLLSDDDHFTDATSHKVFFTSRQ 191
            RKLVSKWHPTTKGTLRRNYRVPSK EGRRLLKAIASLLSDDDHF DATSHK     R+
Sbjct: 143 GRKLVSKWHPTTKGTLRRNYRVPSKPEGRRLLKAIASLLSDDDHFVDATSHKGCQIRRE 201

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449462577|ref|XP_004149017.1| PREDICTED: uncharacterized protein LOC101215704 [Cucumis sativus] gi|449502194|ref|XP_004161570.1| PREDICTED: uncharacterized protein LOC101227576 [Cucumis sativus]

 Score =  201 bits (511), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 107/159 (67%), Positives = 121/159 (76%), Gaps = 7/159 (4%)

Query: 33  FLSRPTKTLQNLLFSNPKSSQKKLLRT----STINASLLEAPLLWAGRLCVYYALLKAGL 88
           F S P   L   L  +   S K L  T    S+  ASL+EAP+LWAGRLC++YALL+AGL
Sbjct: 36  FPSHPKNALTTFLHFHKTRSNKSLSNTFNSPSSTRASLIEAPILWAGRLCIFYALLRAGL 95

Query: 89  AGSQANPLVSDLE---SGGVTGSEGADLGFSKWLENIKGKPDKEAADKRKLVSKWHPTTK 145
           AGSQ+NPL+SDL+    G   G   +DLGFSKWLE+++GKP  EA DKRKLVSKWHPTTK
Sbjct: 96  AGSQSNPLISDLDLSYGGSSDGESSSDLGFSKWLESVRGKPVDEAVDKRKLVSKWHPTTK 155

Query: 146 GTLRRNYRVPSKSEGRRLLKAIASLLSDDDHFTDATSHK 184
           GTLRRNYRVPSKSEGRRLLKAI SLLSDDDHF DATSHK
Sbjct: 156 GTLRRNYRVPSKSEGRRLLKAIMSLLSDDDHFVDATSHK 194

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388499404|gb|AFK37768.1| unknown [Lotus japonicus]

 Score =  200 bits (508), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 98/121 (80%), Positives = 104/121 (85%)

Query: 64  ASLLEAPLLWAGRLCVYYALLKAGLAGSQANPLVSDLESGGVTGSEGADLGFSKWLENIK 123
           ASLLEAP+LWAGRLC++YALLKAGLAGS ANPLVSDLE G    +E ADLGFSKW + I 
Sbjct: 63  ASLLEAPVLWAGRLCIFYALLKAGLAGSPANPLVSDLEVGDGGIAESADLGFSKWTQAIP 122

Query: 124 GKPDKEAADKRKLVSKWHPTTKGTLRRNYRVPSKSEGRRLLKAIASLLSDDDHFTDATSH 183
           GKP KE A+  K VSKWHPTTKGTLRRNYRV SKSEGRRLLKAIASLLSDDDHF DATSH
Sbjct: 123 GKPAKEVANGGKFVSKWHPTTKGTLRRNYRVRSKSEGRRLLKAIASLLSDDDHFVDATSH 182

Query: 184 K 184
           K
Sbjct: 183 K 183

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388507382|gb|AFK41757.1| unknown [Lotus japonicus]

 Score =  199 bits (506), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 98/121 (80%), Positives = 104/121 (85%)

Query: 64  ASLLEAPLLWAGRLCVYYALLKAGLAGSQANPLVSDLESGGVTGSEGADLGFSKWLENIK 123
           ASLLEAP+LWAGRLC++YALLKAGLAGS ANPLVSDLE G    +E ADLGFSKW + I 
Sbjct: 64  ASLLEAPVLWAGRLCIFYALLKAGLAGSPANPLVSDLEVGDGGIAESADLGFSKWTQAIL 123

Query: 124 GKPDKEAADKRKLVSKWHPTTKGTLRRNYRVPSKSEGRRLLKAIASLLSDDDHFTDATSH 183
           GKP KE A+  K VSKWHPTTKGTLRRNYRV SKSEGRRLLKAIASLLSDDDHF DATSH
Sbjct: 124 GKPAKEVANGGKFVSKWHPTTKGTLRRNYRVRSKSEGRRLLKAIASLLSDDDHFVDATSH 183

Query: 184 K 184
           K
Sbjct: 184 K 184

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	201
TAIR|locus:2096643	249	AT3G32930 "AT3G32930" [Arabido	0.880	0.710	0.630	1.9e-53

TAIR|locus:2096643 AT3G32930 "AT3G32930" [Arabidopsis thaliana (taxid:3702)]

 Score = 553 (199.7 bits), Expect = 1.9e-53, P = 1.9e-53
 Identities = 121/192 (63%), Positives = 146/192 (76%)

Query:     1 MQLSTN--FTASPFRSQNHL--FNNLSPTSFL-HKSLFLSRPTKTLQNLLFSNPKSSQKK 55
             MQLS     + S FRSQ+ +   +N +P+  L  KS+F    +K   + +F  PK    K
Sbjct:     1 MQLSLVQVSSVSNFRSQSTIPTLSNSNPSCLLLQKSIFPG--SKLTLHRIFRYPK----K 54

Query:    56 LLRTSTINASLLEAPLLWAGRLCVYYALLKAGLAGSQANPLVSDLESGGVTGS--EGADL 113
             +   ST  ASLLE P+LWAGR+CV+YAL+KAG AGS++NP+VS L++GGV     +GADL
Sbjct:    55 ISNGST-RASLLETPILWAGRICVFYALVKAGFAGSKSNPIVSGLDTGGVDVEYDDGADL 113

Query:   114 GFSKWLENIKG-KPDKEAADKRKLVSKWHPTTKGTLRRNYRVPSKSEGRRLLKAIASLLS 172
             GFSKWL+NIKG KPDK+AADKRKLVSKWHPTTKGTLRRNYR+PSK+EG RLLKAIASLLS
Sbjct:   114 GFSKWLQNIKGNKPDKDAADKRKLVSKWHPTTKGTLRRNYRIPSKAEGNRLLKAIASLLS 173

Query:   173 DDDHFTDATSHK 184
             DDDHF DATSHK
Sbjct:   174 DDDHFRDATSHK 185


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.131   0.381    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      201       201   0.00089  111 3  11 22  0.50    32
                                                     31  0.45    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  602 (64 KB)
  Total size of DFA:  161 KB (2095 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.16u 0.09s 20.25t   Elapsed:  00:00:01
  Total cpu time:  20.16u 0.09s 20.25t   Elapsed:  00:00:01
  Start:  Thu May  9 23:26:17 2013   End:  Thu May  9 23:26:18 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009941 "chloroplast envelope" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	201
PRK00823	97	phhB pterin-4-alpha-carbinolamine dehydratase; Val	92.87
cd00913	76	PCD_DCoH_subfamily_a PCD_DCoH: The bifunctional pr	92.68
PF01329	95	Pterin_4a: Pterin 4 alpha carbinolamine dehydratas	89.68
cd00914	76	PCD_DCoH_subfamily_b PCD_DCoH: The bifunctional pr	89.47
cd00488	75	PCD_DCoH PCD_DCoH: The bifunctional protein pterin	88.2

>PRK00823 phhB pterin-4-alpha-carbinolamine dehydratase; Validated

Probab=92.87  E-value=0.14  Score=37.53  Aligned_cols=59  Identities=15%  Similarity=0.271  Sum_probs=47.8

Q ss_pred             hhhhhhhhhhcccccCccc-ceeeccccCChHHHHHHHHHHHHhhcCCCccccccCccce
Q 028943          128 KEAADKRKLVSKWHPTTKG-TLRRNYRVPSKSEGRRLLKAIASLLSDDDHFTDATSHKVF  186 (201)
Q Consensus       128 keaadkrKLvSKWhpTTKG-TLrRnYRvpSk~EGrRlLKaIAslLSdDDhFvdAtSHKGC  186 (201)
                      .|.+...+-+..|.-...| .|.|.|.+++-.++..++.+||.+-.+.+|..|-+...++
T Consensus         9 ~ei~~~l~~l~gW~~~~~~~~l~r~f~f~~f~~a~~f~~~Va~~ae~~~HHP~i~~~~~~   68 (97)
T PRK00823          9 EEIAELLPQLPGWTLVGDRDAIERTFKFKNFNEAFAFMNRVAEIAEEEDHHPDWFNVYNR   68 (97)
T ss_pred             HHHHHHhhcCCCCeEeCCcCeEEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCCEEEEcCE
Confidence            4444444445789986555 6999999999999999999999999999999988776654

>cd00913 PCD_DCoH_subfamily_a PCD_DCoH: The bifunctional protein pterin-4alpha-carbinolamine dehydratase (PCD), also known as DCoH (dimerization cofactor of hepatocyte nuclear factor-1), is both a transcription activator and a metabolic enzyme

Probab=92.68  E-value=0.13  Score=36.12  Aligned_cols=46  Identities=17%  Similarity=0.311  Sum_probs=39.5

Q ss_pred             cccCcc-cceeeccccCChHHHHHHHHHHHHhhcCCCccccccCccc
Q 028943          140 WHPTTK-GTLRRNYRVPSKSEGRRLLKAIASLLSDDDHFTDATSHKV  185 (201)
Q Consensus       140 WhpTTK-GTLrRnYRvpSk~EGrRlLKaIAslLSdDDhFvdAtSHKG  185 (201)
                      |.-... +.|.|.|.+++-+++..++.+||.+-.+.||..|-+...+
T Consensus         2 W~~~~~~~~l~r~f~f~~f~~a~~f~~~va~~ae~~~HHP~i~~~~~   48 (76)
T cd00913           2 WELADDGLKLERTFRFKNFVEALEFVNAVGEIAEAEGHHPDLSLGWG   48 (76)
T ss_pred             CcCcCCCCeEEEEEEcCCHHHHHHHHHHHHHHHHHcCCCCCEEEecc
Confidence            544443 5899999999999999999999999999999998876655

DCoH stimulates gene expression by associating with specific DNA binding proteins such as HNF-1alpha (hepatocyte nuclear factor-1) and Xenopus enhancer of rudimentary homologue (XERH). DCoH also catalyzes the dehydration of 4alpha- hydroxy- tetrahydrobiopterin (4alpha-OH-BH4) to quinoiddihydrobiopterin, a percursor of the phenylalanine hydroxylase cofactor BH4 (tetrahydrobiopterin). The DCoH homodimer has a saddle-shaped structure similar to that of TBP (TATA binding protein).

>PF01329 Pterin_4a: Pterin 4 alpha carbinolamine dehydratase; InterPro: IPR001533 DCoH is the dimerisation cofactor of hepatocyte nuclear factor 1 (HNF-1) that functions as both a transcriptional coactivator and a pterin dehydratase []

Probab=89.68  E-value=0.26  Score=35.97  Aligned_cols=58  Identities=19%  Similarity=0.395  Sum_probs=44.0

Q ss_pred             chhhhhhhhhhcccccCcccceeeccccCChHHHHHHHHHHHHhhcCCCccccccCcc
Q 028943          127 DKEAADKRKLVSKWHPTTKGTLRRNYRVPSKSEGRRLLKAIASLLSDDDHFTDATSHK  184 (201)
Q Consensus       127 ~keaadkrKLvSKWhpTTKGTLrRnYRvpSk~EGrRlLKaIAslLSdDDhFvdAtSHK  184 (201)
                      ++|.+..-+-...|.-...+.|.|.|+.++-.++..++.+||.+-.+-+|..|-+...
T Consensus         7 ~~ei~~~L~~l~~W~~~~~~~l~r~f~f~~f~~a~~f~~~Va~~ae~~~HHP~i~~~~   64 (95)
T PF01329_consen    7 EEEIAEALAELPGWKLDGGGRLERTFKFKDFAEAVEFVNRVAALAEEENHHPDISLGY   64 (95)
T ss_dssp             HHHHHHHHHTSTTSEEETSSEEEEEEE-SSHHHHHHHHHHHHHHHHHHT---EEEEET
T ss_pred             HHHHHHhhhcCcCCEECCCCcEEEEEEeCCHHHHHHHHHHHHHHHHHhCCCCCeEecC
Confidence            3455555455588988866999999999999999999999999999999998876543

X-ray crystallographic studies have shown that the ligand binds at four sites per tetrameric enzyme, with little apparent conformational change in the protein.; GO: 0008124 4-alpha-hydroxytetrahydrobiopterin dehydratase activity, 0006729 tetrahydrobiopterin biosynthetic process; PDB: 2V6T_B 2V6U_A 2V6S_B 2EBB_A 1USM_A 1F93_B 1DCP_C 1DCH_E 3HXA_E 1DCO_C ....

>cd00914 PCD_DCoH_subfamily_b PCD_DCoH: The bifunctional protein pterin-4alpha-carbinolamine dehydratase (PCD), also known as DCoH (dimerization cofactor of hepatocyte nuclear factor-1), is both a transcription activator and a metabolic enzyme

Probab=89.47  E-value=0.38  Score=33.92  Aligned_cols=41  Identities=7%  Similarity=0.090  Sum_probs=37.4

Q ss_pred             cceeeccccCChHHHHHHHHHHHHhhcCCCccccccCccce
Q 028943          146 GTLRRNYRVPSKSEGRRLLKAIASLLSDDDHFTDATSHKVF  186 (201)
Q Consensus       146 GTLrRnYRvpSk~EGrRlLKaIAslLSdDDhFvdAtSHKGC  186 (201)
                      +.|.|.|.+++-+++..++.+||.+-.+.+|..|-+...++
T Consensus         9 ~~l~r~f~f~~f~~a~~f~~~va~~ae~~~HHPdi~~~~~~   49 (76)
T cd00914           9 DAIHKSFKFKDFNEAFGFMTRVALEAEKMNHHPEWFNVYNK   49 (76)
T ss_pred             CeEEEEEEeCCHHHHHHHHHHHHHHHHHhCCCCCEEEeccE
Confidence            57999999999999999999999999999999998776655

DCoH stimulates gene expression by associating with specific DNA binding proteins such as HNF-1alpha (hepatocyte nuclear factor-1) and Xenopus enhancer of rudimentary homologue (XERH). DCoH also catalyzes the dehydration of 4alpha- hydroxy- tetrahydrobiopterin (4alpha-OH-BH4) to quinoiddihydrobiopterin, a percursor of the phenylalanine hydroxylase cofactor BH4 (tetrahydrobiopterin). The DCoH homodimer has a saddle-shaped structure similar to that of TBP (TATA binding protein). Two DCoH proteins have been identifed in humans: DCoH1 and DCoH2. Mutations in human DCoH1 cause hyperphenylalaninemia. Loss of enzymic activity of DCoH in humans is associated with the depigmentation disorder vitiligo. DCoH1 has been reported to be overexpessed in colon

>cd00488 PCD_DCoH PCD_DCoH: The bifunctional protein pterin-4alpha-carbinolamine dehydratase (PCD), also known as DCoH (dimerization cofactor of hepatocyte nuclear factor-1), is both a transcription activator and a metabolic enzyme

Probab=88.20  E-value=0.58  Score=32.63  Aligned_cols=42  Identities=17%  Similarity=0.226  Sum_probs=37.8

Q ss_pred             ccceeeccccCChHHHHHHHHHHHHhhcCCCccccccCccce
Q 028943          145 KGTLRRNYRVPSKSEGRRLLKAIASLLSDDDHFTDATSHKVF  186 (201)
Q Consensus       145 KGTLrRnYRvpSk~EGrRlLKaIAslLSdDDhFvdAtSHKGC  186 (201)
                      .+.|.|.|.+++-.++.+++.+||.+-.+.+|..|-+...++
T Consensus         7 ~~~l~r~f~f~~f~~a~~f~~~va~~ae~~~HHP~i~~~~~~   48 (75)
T cd00488           7 GDALERTFKFKDFKEAIAFVNRVAELAEALNHHPDISNVYNK   48 (75)
T ss_pred             CCcEEEEEEcCCHHHHHHHHHHHHHHHHHcCCCCCEEEeeeE
Confidence            367999999999999999999999999999999888776654

DCoH stimulates gene expression by associating with specific DNA binding proteins such as HNF-1alpha (hepatocyte nuclear factor-1) and Xenopus enhancer of rudimentary homologue (XERH). DCoH also catalyzes the dehydration of 4alpha- hydroxy- tetrahydrobiopterin (4alpha-OH-BH4) to quinoiddihydrobiopterin, a percursor of the phenylalanine hydroxylase cofactor BH4 (tetrahydrobiopterin). The DCoH homodimer has a saddle-shaped structure similar to that of TBP (TATA binding protein). Two DCoH proteins have been identifed in humans: DCoH1 and DCoH2. Mutations in human DCoH1 cause hyperphenylalaninemia. Loss of enzymic activity of DCoH in humans is associated with the depigmentation disorder vitiligo. DCoH1 has been reported to be overexpessed in colon cancer carc

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	201
2ebb_A	101	Pterin-4-alpha-carbinolamine dehydratase; coenzyme	84.68
3jst_A	97	Putative pterin-4-alpha-carbinolamine dehydratase;	84.09
2v6u_A	104	Pterin-4A-carbinolamine dehydratase; lyase, enzyme	82.76
1ru0_A	105	DCOH-like protein dcohm; alpha and beta structure,	82.45

>2ebb_A Pterin-4-alpha-carbinolamine dehydratase; coenzyme biosyntheses, GK1984, structural genomics, NPPSFA; 1.60A {Geobacillus kaustophilus}

Probab=84.68  E-value=0.83  Score=33.14  Aligned_cols=56  Identities=14%  Similarity=0.281  Sum_probs=43.5

Q ss_pred             hhhhhhhhhhcccccCcccceeeccccCChHHHHHHHHHHHHhhcCCCccccccCc
Q 028943          128 KEAADKRKLVSKWHPTTKGTLRRNYRVPSKSEGRRLLKAIASLLSDDDHFTDATSH  183 (201)
Q Consensus       128 keaadkrKLvSKWhpTTKGTLrRnYRvpSk~EGrRlLKaIAslLSdDDhFvdAtSH  183 (201)
                      .|.+..-+-+..|.....+.|+|.|+.++-.++..++.+||.+-...||..|-+..
T Consensus         6 ~ei~~~L~~l~gW~~~~~~~i~r~f~F~~f~~a~~F~~~Va~~Ae~~~HHPdi~~~   61 (101)
T 2ebb_A            6 EEVQALLEKADGWKLADERWIVKKYRFQDYLQGIEFVRRIAAISENANHHPFISID   61 (101)
T ss_dssp             HHHHHHHHTSTTCEEETTTEEEEEEECSSHHHHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred             HHHHHHhhcCCCCeECCCCCEEEEEEeCCHHHHHHHHHHHHHHHHHhCCCCcEEEe
Confidence            34444444446788764435999999999999999999999999999998776543

>3jst_A Putative pterin-4-alpha-carbinolamine dehydratase; lyase, structural genomics, seattle structural genomics CENT infectious disease, ssgcid; 2.10A {Brucella melitensis} SCOP: d.74.1.0

Probab=84.09  E-value=0.78  Score=32.89  Aligned_cols=55  Identities=13%  Similarity=0.241  Sum_probs=43.9

Q ss_pred             chhhhhhhhhhcccccCccc-ceeeccccCChHHHHHHHHHHHHhhcCCCcccccc
Q 028943          127 DKEAADKRKLVSKWHPTTKG-TLRRNYRVPSKSEGRRLLKAIASLLSDDDHFTDAT  181 (201)
Q Consensus       127 ~keaadkrKLvSKWhpTTKG-TLrRnYRvpSk~EGrRlLKaIAslLSdDDhFvdAt  181 (201)
                      +.|.+..-+-...|.-...| .|+|.|+.++-.++..++.+||.+-..-||.-|-+
T Consensus         8 ~~ei~~~L~~l~gW~~~~~~~~l~r~f~f~~f~~a~~f~~~Va~~Ae~~~HHPdi~   63 (97)
T 3jst_A            8 ESEMNEALRALDGWQKVDGREAITRSFKFKDFSTAFGFMAQAALYAEKLDHHPEWF   63 (97)
T ss_dssp             HHHHHHHHHTSTTCEECTTSSCEEEEEECSSHHHHHHHHHHHHHHHHHHTCCCEEE
T ss_pred             HHHHHHHhhcCCCCeEeCCCCeEEEEEEeCCHHHHHHHHHHHHHHHHHhCCCCeEE
Confidence            34455444445789887533 89999999999999999999999999999987755

>2v6u_A Pterin-4A-carbinolamine dehydratase; lyase, enzyme; 1.6A {Toxoplasma gondii} PDB: 2v6s_A 2v6t_A*

Probab=82.76  E-value=1.1  Score=32.55  Aligned_cols=57  Identities=18%  Similarity=0.310  Sum_probs=44.8

Q ss_pred             chhhhhhhhhhcccccCccc-ceeeccccCChHHHHHHHHHHHHhhcCCCccccccCc
Q 028943          127 DKEAADKRKLVSKWHPTTKG-TLRRNYRVPSKSEGRRLLKAIASLLSDDDHFTDATSH  183 (201)
Q Consensus       127 ~keaadkrKLvSKWhpTTKG-TLrRnYRvpSk~EGrRlLKaIAslLSdDDhFvdAtSH  183 (201)
                      +.|.+..-+-+..|.....| .|+|.|+.++-.++..++.+||.+-...||.-|-+-.
T Consensus        11 ~~ei~~~L~~l~gW~~~~~~~~i~r~f~F~~f~~a~~F~~~Va~~Ae~~~HHPdi~~~   68 (104)
T 2v6u_A           11 SARLLQLHKTVPQWHLTDGHLSIKRKFQFSDFNEAWGFMSRVALYADKVDHHPNWYNV   68 (104)
T ss_dssp             CHHHHHHHTTSTTSEECGGGCCEEEEEECSSHHHHHHHHHHHHHHHHHHTCCCEEEEE
T ss_pred             HHHHHHHhhcCCCCeEeCCcCeEEEEEEeCCHHHHHHHHHHHHHHHHHhCCCCcEEEe
Confidence            44555444445679876533 7999999999999999999999999999998776543

>1ru0_A DCOH-like protein dcohm; alpha and beta structure, lyase; 1.60A {Mus musculus} SCOP: d.74.1.1

Probab=82.45  E-value=0.98  Score=32.88  Aligned_cols=56  Identities=7%  Similarity=0.153  Sum_probs=44.0

Q ss_pred             chhhhhhhhhh--cccccCccc-ceeeccccCChHHHHHHHHHHHHhhcCCCccccccC
Q 028943          127 DKEAADKRKLV--SKWHPTTKG-TLRRNYRVPSKSEGRRLLKAIASLLSDDDHFTDATS  182 (201)
Q Consensus       127 ~keaadkrKLv--SKWhpTTKG-TLrRnYRvpSk~EGrRlLKaIAslLSdDDhFvdAtS  182 (201)
                      +.|.+..-+-+  .-|.....+ .|+|.|+.++-.++..++.+||.+-...||.-|-+.
T Consensus        12 ~~ei~~~L~~l~~~gW~~~~~~~~i~r~f~F~~f~~a~~F~~~Va~~Ae~~~HHPdi~~   70 (105)
T 1ru0_A           12 AEERDQLIPGLKAAGWSELSERDAIYKEFSFKNFNQAFGFMSRVALQAEKMNHHPEWFN   70 (105)
T ss_dssp             HHHHHHHHHHHHHTTCEECSSSSCEEEEEECSSHHHHHHHHHHHHHHHHHHTCCCEEEE
T ss_pred             HHHHHHHHHhCCCCCCeEECCCCeEEEEEEeCCHHHHHHHHHHHHHHHHHhCCCCcEEE
Confidence            44444444434  679876554 799999999999999999999999999999877543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	201
d1ru0a_	100	DcoH-like protein DCoH2 {Mouse (Mus musculus) [Tax	85.91
d1usma_	80	Pterin-4a-carbinolamine dehydratase (PCD)/dimeriza	83.55

>d1ru0a_ d.74.1.1 (A:) DcoH-like protein DCoH2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: DCoH-like
superfamily: PCD-like
family: PCD-like
domain: DcoH-like protein DCoH2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.91  E-value=0.27  Score=33.59  Aligned_cols=47  Identities=6%  Similarity=0.191  Sum_probs=40.5

Q ss_pred             hcccccCccc-ceeeccccCChHHHHHHHHHHHHhhcCCCccccccCc
Q 028943          137 VSKWHPTTKG-TLRRNYRVPSKSEGRRLLKAIASLLSDDDHFTDATSH  183 (201)
Q Consensus       137 vSKWhpTTKG-TLrRnYRvpSk~EGrRlLKaIAslLSdDDhFvdAtSH  183 (201)
                      ++.|.....+ .|+|.|..++-.++...+..||.+-.+.||..|-+..
T Consensus        19 ~~gW~~~~~~~~L~r~f~f~~f~~a~~F~~~va~~ae~~~HHPdi~~~   66 (100)
T d1ru0a_          19 AAGWSELSERDAIYKEFSFKNFNQAFGFMSRVALQAEKMNHHPEWFNV   66 (100)
T ss_dssp             HTTCEECSSSSCEEEEEECSSHHHHHHHHHHHHHHHHHHTCCCEEEEE
T ss_pred             CCCCEEECCCCeEEEEEEeCCHHHHHHHHHHHHHHHHHhCCCCeEEEe
Confidence            3679876544 5999999999999999999999999999999987643