Citrus Sinensis ID: 028946

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-
Protein Sequence
MHQARMPLPLEMEEEPVYVNAKQYRGILRRRQSRAKAELEKKVIKARKVTFHSLKGATIFYNKTLQGLDTYALFSLQPYLHESRHQHAMRRARGCGGRFLNTKKLNDNAANSAEKGMNSGADSSKGSTNGTGSVDSSIVQQERAMEENAHMEHTSSNSNSNNRSLLSMYNTSSGSVEGNFLGQQRGSMQGNGAPRGALPVK
Secondary Structure (PSIPRED)
ccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHcccccccHHHHHHcccccHHHHHHHHHHcccccccccEEccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccEEEcHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccHHHHHHHHHHcHHcccHccccccccHHHHHHHHHccccccccEcccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mhqarmplplemeeepvyvnAKQYRGILRRRQSRAKAELEKKVIKARKVTFHSLKGATIFYNktlqgldtyalfslqpylhesrHQHAMRRArgcggrflntkklndNAANSaekgmnsgadsskgstngtgsvdsSIVQQERAMEEnahmehtssnsnsnnRSLLSMYntssgsvegnflgqqrgsmqgngaprgalpvk
Flexible Loop (DISEMBL)
mhqarmplplemeeepvyvNAKQYRGILRRRQSRAKAELEKKvikarkvtfhslkgaTIFYNKTLQGLDTYALFSLQPYLHESRHQHAMRRARGCGGRFLNTKKLNDNAANSAEKgmnsgadsskgstngtgsvDSSIVQQERAMEENAhmehtssnsnsnnRSLLSMYNTSSGSVEGNFLGqqrgsmqgngaprgalpvk
Low Complexity Region (SEG)
MHQARmplplemeeepVYVNAKQYRGILRRRQSRAKAELEKKVIKARKVTFHSLKGATIFYNKTLQGLDTYALFSLQPYLHESRHQHAMRRARGCGGRFLNTKKLNDNAANSAEKGMNSGADSSKGSTNGTGSVDSSIVQQERAMEENAHMEHTssnsnsnnrsllsMYNTSSGSVEGNFLGQQRGSMQGNGAPRGALPVK
Disordered region (IsUnstruct)
*****************YVNAKQYRGIL**********LEKKVIKARKVTFHSLKGATIFYNKTLQGLDTYALFSLQPYLHES**********GCGGRF******************************************************************************************************
Disordered Region (DISOPRED)
**********EMEEEPVYVNAKQYRGILRRRQSR***********************************************************************************************************************************************************************
Disordered Region (DISEMBL)
MHQARMPLPLEMEEEPVYVNAKQYRGIL***********EKKVIKARKVTFHSLKGATIFYNKTLQGLDTYALFSLQPYLHESRHQHAMRRARGCGGRFLNTKKLNDNAAN***************************VQQERAME**************NNRSLLSMYNTSSGSVEGNFLGQQRGS**************
Disordered Region (DISPRO)
*****MPLPLEMEEEPVYVNAKQYRGILRRRQSRAKAELEKKVIKARKVTFHSLKGATIFYNKTLQGLDTYALFSLQPYLHESRHQHAMRRARGCGGRFLNT***************************************************************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MHQARMPLPLEMEEEPVYVNAKQYRGILRRRQSRAKAELEKKVIKARKVTFHSLKGATIFYNKTLQGLDTYALFSLQPYLHESRHQHAMRRARGCGGRFLNTKKLNDNAANSAEKGMNSGADSSKGSTNGTGSVDSSIVQQERAMEENAHMEHTSSNSNSNNRSLLSMYNTSSGSVEGNFLGQQRGSMQGNGAPRGALPVK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	201	2.2.26 [Sep-21-2011]
Q945M9	303	Nuclear transcription fac	yes	no	0.487	0.323	0.507	6e-25
Q84JP1	190	Nuclear transcription fac	no	no	0.507	0.536	0.458	4e-23
Q9LXV5	272	Nuclear transcription fac	no	no	0.477	0.352	0.466	5e-22
Q8VY64	198	Nuclear transcription fac	no	no	0.487	0.494	0.441	7e-21
Q9SYH4	308	Nuclear transcription fac	no	no	0.457	0.298	0.442	7e-21
Q9LNP6	328	Nuclear transcription fac	no	no	0.373	0.228	0.485	7e-21
Q93ZH2	340	Nuclear transcription fac	no	no	0.378	0.223	0.490	2e-20
Q9LVJ7	308	Nuclear transcription fac	no	no	0.358	0.233	0.490	2e-19
Q9M9X4	295	Nuclear transcription fac	no	no	0.562	0.383	0.406	7e-18
Q8LFU0	269	Nuclear transcription fac	no	no	0.417	0.312	0.427	6e-16

>sp|Q945M9|NFYA9_ARATH Nuclear transcription factor Y subunit A-9 OS=Arabidopsis thaliana GN=NFYA9 PE=2 SV=1

 Score =  114 bits (284), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 66/130 (50%), Positives = 76/130 (58%), Gaps = 32/130 (24%)

Query: 1   MHQARMPLPLEMEEEPVYVNAKQYRGILRRRQSRAKAELEKKVIKARKVTFHSLKGATIF 60
           M  +RMPLP EM +EPV+VNAKQY+ ILRRRQ+RAKAELEKK+IK+RK            
Sbjct: 152 MPHSRMPLPPEMAQEPVFVNAKQYQAILRRRQARAKAELEKKLIKSRK------------ 199

Query: 61  YNKTLQGLDTYALFSLQPYLHESRHQHAMRRARGCGGRFLNTKKLNDNAAN-SAEKGMNS 119
                            PYLHESRHQHAMRR RG GGRF   KK N  A+   AE+  N 
Sbjct: 200 -----------------PYLHESRHQHAMRRPRGTGGRF--AKKTNTEASKRKAEEKSNG 240

Query: 120 GADSSKGSTN 129
               S  S+N
Sbjct: 241 HVTQSPSSSN 250

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Arabidopsis thaliana (taxid: 3702)

>sp|Q84JP1|NFYA7_ARATH Nuclear transcription factor Y subunit A-7 OS=Arabidopsis thaliana GN=NFYA7 PE=2 SV=1

 Score =  107 bits (268), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 61/133 (45%), Positives = 78/133 (58%), Gaps = 31/133 (23%)

Query: 1   MHQARMPLPLEMEEEPVYVNAKQYRGILRRRQSRAKAELEKKVIKARKVTFHSLKGATIF 60
           + Q  +PLP +  EEPV+VNAKQY GILRRRQSRA+ E + KVIK+RK            
Sbjct: 86  VQQQGVPLPSDAVEEPVFVNAKQYHGILRRRQSRARLESQNKVIKSRK------------ 133

Query: 61  YNKTLQGLDTYALFSLQPYLHESRHQHAMRRARGCGGRFLNTKKLNDNAANSA--EKGMN 118
                            PYLHESRH HA+RR RGCGGRFLN KK +++  +S+  EK   
Sbjct: 134 -----------------PYLHESRHLHAIRRPRGCGGRFLNAKKEDEHHEDSSHEEKSNL 176

Query: 119 SGADSSKGSTNGT 131
           S   S+  +++GT
Sbjct: 177 SAGKSAMAASSGT 189

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LXV5|NFYA1_ARATH Nuclear transcription factor Y subunit A-1 OS=Arabidopsis thaliana GN=NFYA1 PE=2 SV=1

 Score =  104 bits (259), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 63/135 (46%), Positives = 77/135 (57%), Gaps = 39/135 (28%)

Query: 1   MHQARMPLPLEMEEEPVYVNAKQYRGILRRRQSRAKAELEKKVIKARKVTFHSLKGATIF 60
           M + R  LPL+M +EPVYVNAKQY GILRRR++RAKAELE+KVI+ RK            
Sbjct: 158 MPRERTALPLDMAQEPVYVNAKQYEGILRRRKARAKAELERKVIRDRK------------ 205

Query: 61  YNKTLQGLDTYALFSLQPYLHESRHQHAMRRARGCGGRFLNTKKLNDNAANSAEKGMNSG 120
                            PYLHESRH+HAMRRAR  GGRF    ++        E G ++G
Sbjct: 206 -----------------PYLHESRHKHAMRRARASGGRFAKKSEV--------EAGEDAG 240

Query: 121 A-DSSKGS-TNGTGS 133
             D  +GS TN +GS
Sbjct: 241 GRDRERGSATNSSGS 255

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VY64|NFYA4_ARATH Nuclear transcription factor Y subunit A-4 OS=Arabidopsis thaliana GN=NFYA4 PE=2 SV=1

 Score =  100 bits (249), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 57/129 (44%), Positives = 72/129 (55%), Gaps = 31/129 (24%)

Query: 1   MHQARMPLPLEMEEEPVYVNAKQYRGILRRRQSRAKAELEKKVIKARKVTFHSLKGATIF 60
           M Q  +PL  +  EEPV+VNAKQY GILRRRQSRAK E   + IKA+K            
Sbjct: 84  MQQPGVPLQCDAVEEPVFVNAKQYHGILRRRQSRAKLEARNRAIKAKK------------ 131

Query: 61  YNKTLQGLDTYALFSLQPYLHESRHQHAMRRARGCGGRFLNTKKLNDNAANSAEKGMNSG 120
                            PY+HESRH HA+RR RGCGGRFLN KK  +N  +  E+   S 
Sbjct: 132 -----------------PYMHESRHLHAIRRPRGCGGRFLNAKK--ENGDHKEEEEATSD 172

Query: 121 ADSSKGSTN 129
            ++S+ S++
Sbjct: 173 ENTSEASSS 181

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SYH4|NFYA5_ARATH Nuclear transcription factor Y subunit A-5 OS=Arabidopsis thaliana GN=NFYA5 PE=2 SV=1

 Score =  100 bits (249), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 54/122 (44%), Positives = 71/122 (58%), Gaps = 30/122 (24%)

Query: 4   ARMPLPLEMEE-EPVYVNAKQYRGILRRRQSRAKAELEKKVIKARKVTFHSLKGATIFYN 62
           +R+PLP  ++E EP++VNAKQY  ILRRR+ RAK E + K+IK RK              
Sbjct: 166 SRVPLPHHIQENEPIFVNAKQYHAILRRRKHRAKLEAQNKLIKCRK-------------- 211

Query: 63  KTLQGLDTYALFSLQPYLHESRHQHAMRRARGCGGRFLNTKKLNDNAANSAEKGMNSGAD 122
                          PYLHESRH HA++RARG GGRFLNTKKL +++ +     M +G +
Sbjct: 212 ---------------PYLHESRHLHALKRARGSGGRFLNTKKLQESSNSLCSSQMANGQN 256

Query: 123 SS 124
            S
Sbjct: 257 FS 258

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Involved in the blue light (BL) and abscisic acid (ABA) signaling pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LNP6|NFYA8_ARATH Nuclear transcription factor Y subunit A-8 OS=Arabidopsis thaliana GN=NFYA8 PE=2 SV=2

 Score =  100 bits (248), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 51/105 (48%), Positives = 62/105 (59%), Gaps = 30/105 (28%)

Query: 4   ARMPLPLEM-EEEPVYVNAKQYRGILRRRQSRAKAELEKKVIKARKVTFHSLKGATIFYN 62
            R+PLP ++ E EPV+VNAKQ+  I+RRRQ RAK E + K+IKARK              
Sbjct: 160 TRVPLPFDLIENEPVFVNAKQFHAIMRRRQQRAKLEAQNKLIKARK-------------- 205

Query: 63  KTLQGLDTYALFSLQPYLHESRHQHAMRRARGCGGRFLNTKKLND 107
                          PYLHESRH HA++R RG GGRFLNTKKL +
Sbjct: 206 ---------------PYLHESRHVHALKRPRGSGGRFLNTKKLQE 235

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93ZH2|NFYA3_ARATH Nuclear transcription factor Y subunit A-3 OS=Arabidopsis thaliana GN=NFYA3 PE=2 SV=2

 Score = 98.6 bits (244), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 52/106 (49%), Positives = 62/106 (58%), Gaps = 30/106 (28%)

Query: 1   MHQARMPLPLEMEE-EPVYVNAKQYRGILRRRQSRAKAELEKKVIKARKVTFHSLKGATI 59
           M   R+PLP E+ E +PV+VNAKQY  I+RRRQ RAK E + K+I+ARK           
Sbjct: 164 MIPGRVPLPAELTETDPVFVNAKQYHAIMRRRQQRAKLEAQNKLIRARK----------- 212

Query: 60  FYNKTLQGLDTYALFSLQPYLHESRHQHAMRRARGCGGRFLNTKKL 105
                             PYLHESRH HA++R RG GGRFLNTKKL
Sbjct: 213 ------------------PYLHESRHVHALKRPRGSGGRFLNTKKL 240

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LVJ7|NFYA6_ARATH Nuclear transcription factor Y subunit A-6 OS=Arabidopsis thaliana GN=NFYA6 PE=2 SV=1

 Score = 95.9 bits (237), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 50/102 (49%), Positives = 60/102 (58%), Gaps = 30/102 (29%)

Query: 4   ARMPLPLEMEE-EPVYVNAKQYRGILRRRQSRAKAELEKKVIKARKVTFHSLKGATIFYN 62
           +RMPLP  + E EP++VNAKQY+ ILRRR+ RAK E + K+IK RK              
Sbjct: 159 SRMPLPHNIPENEPIFVNAKQYQAILRRRERRAKLEAQNKLIKVRK-------------- 204

Query: 63  KTLQGLDTYALFSLQPYLHESRHQHAMRRARGCGGRFLNTKK 104
                          PYLHESRH HA++R RG GGRFLNTKK
Sbjct: 205 ---------------PYLHESRHLHALKRVRGSGGRFLNTKK 231

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M9X4|NFYA2_ARATH Nuclear transcription factor Y subunit A-2 OS=Arabidopsis thaliana GN=NFYA2 PE=2 SV=1

 Score = 90.5 bits (223), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 59/145 (40%), Positives = 79/145 (54%), Gaps = 32/145 (22%)

Query: 3   QARMPLPLEMEEE--PVYVNAKQYRGILRRRQSRAKAE--LEKKVIKARKVTFHSLKGAT 58
           Q+R+ LPL ME E   +YVN+KQY GI+RRRQSRAKA   L++K + +R           
Sbjct: 122 QSRVMLPLNMETEDSTIYVNSKQYHGIIRRRQSRAKAAAVLDQKKLSSR----------- 170

Query: 59  IFYNKTLQGLDTYALFSLQPYLHESRHQHAMRRARGCGGRFLNTKKLN-DNAANSAEKGM 117
                             +PY+H SRH HA+RR RG GGRFLNTK  N +N+  +A+KG 
Sbjct: 171 ----------------CRKPYMHHSRHLHALRRPRGSGGRFLNTKSQNLENSGTNAKKGD 214

Query: 118 NSGADSSKGSTNGTGSVDSSIVQQE 142
            S    S+     + S +S +V  E
Sbjct: 215 GSMQIQSQPKPQQSNSQNSEVVHPE 239

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LFU0|NFYAA_ARATH Nuclear transcription factor Y subunit A-10 OS=Arabidopsis thaliana GN=NFYA10 PE=2 SV=2

 Score = 84.0 bits (206), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 53/124 (42%), Positives = 68/124 (54%), Gaps = 40/124 (32%)

Query: 5   RMPLPLEMEEE---PVYVNAKQYRGILRRRQSRAKAELEKKVIKARKVTFHSLKGATIFY 61
           R+ +PL+ME E    +YVN+KQY GI+RRRQSRAKAE   K+ + RK             
Sbjct: 121 RVMIPLKMETEEDGTIYVNSKQYHGIIRRRQSRAKAE---KLSRCRK------------- 164

Query: 62  NKTLQGLDTYALFSLQPYLHESRHQHAMRRARGCGGRFLNTKKLNDNAANSAEKGMNSGA 121
                           PY+H SRH HAMRR RG GGRFLNTK      A++A++   S +
Sbjct: 165 ----------------PYMHHSRHLHAMRRPRGSGGRFLNTK-----TADAAKQSKPSNS 203

Query: 122 DSSK 125
            SS+
Sbjct: 204 QSSE 207

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	201
297736254	405	unnamed protein product [Vitis vinifera]	0.855	0.424	0.551	2e-47
225450115	346	PREDICTED: nuclear transcription factor	0.855	0.497	0.551	3e-47
449488843	318	PREDICTED: nuclear transcription factor	0.845	0.534	0.497	2e-40
449436305	318	PREDICTED: nuclear transcription factor	0.845	0.534	0.497	3e-40
147789470	342	hypothetical protein VITISV_000211 [Viti	0.706	0.415	0.553	1e-39
224059624	158	predicted protein [Populus trichocarpa]	0.776	0.987	0.497	2e-39
255553570	336	Nuclear transcription factor Y subunit A	0.845	0.505	0.476	6e-39
224104075	376	predicted protein [Populus trichocarpa]	0.766	0.409	0.495	9e-39
343157308	377	CCAAT-binding transcription factor subun	0.741	0.395	0.477	1e-37
356544165	303	PREDICTED: nuclear transcription factor	0.776	0.514	0.486	2e-35

>gi|297736254|emb|CBI24892.3| unnamed protein product [Vitis vinifera]

 Score =  194 bits (492), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 118/214 (55%), Positives = 130/214 (60%), Gaps = 42/214 (19%)

Query: 1   MHQARMPLPLEMEEEPVYVNAKQYRGILRRRQSRAKAELEKKVIKARKVTFHSLKGATIF 60
           MHQ RMPLPLEMEEEPVYVNAKQY GILRRRQSRAKAELEKK IK RK            
Sbjct: 221 MHQPRMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKAIKVRK------------ 268

Query: 61  YNKTLQGLDTYALFSLQPYLHESRHQHAMRRARGCGGRFLNTKKLNDNAAN-SAEKGMNS 119
                            PYLHESRHQHAMRRARGCGGRFLNTKKL++N AN +AEKG  S
Sbjct: 269 -----------------PYLHESRHQHAMRRARGCGGRFLNTKKLDNNDANTTAEKGSVS 311

Query: 120 GA----------DSSKGSTNGTGSVDSSIVQQERAMEENAHM--EHTSSNSNSNNRSLLS 167
           GA           S    TN + ++DSS VQQE        M   HT SN N N   L S
Sbjct: 312 GAALSTQSASSSGSEHLPTNSSRNLDSSSVQQEEKGRTIQDMLEAHTYSNGNRNGHGLSS 371

Query: 168 MYNTSSGSVEGNFLGQQRGSMQGNGAPRGALPVK 201
            Y++S+GS  G+  GQ R +MQ N AP  ALP+K
Sbjct: 372 AYHSSNGSEGGDCFGQPRENMQLNTAPHRALPIK 405

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450115|ref|XP_002278849.1| PREDICTED: nuclear transcription factor Y subunit A-1-like [Vitis vinifera]

 Score =  193 bits (491), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 118/214 (55%), Positives = 130/214 (60%), Gaps = 42/214 (19%)

Query: 1   MHQARMPLPLEMEEEPVYVNAKQYRGILRRRQSRAKAELEKKVIKARKVTFHSLKGATIF 60
           MHQ RMPLPLEMEEEPVYVNAKQY GILRRRQSRAKAELEKK IK RK            
Sbjct: 162 MHQPRMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKAIKVRK------------ 209

Query: 61  YNKTLQGLDTYALFSLQPYLHESRHQHAMRRARGCGGRFLNTKKLNDNAAN-SAEKGMNS 119
                            PYLHESRHQHAMRRARGCGGRFLNTKKL++N AN +AEKG  S
Sbjct: 210 -----------------PYLHESRHQHAMRRARGCGGRFLNTKKLDNNDANTTAEKGSVS 252

Query: 120 GA----------DSSKGSTNGTGSVDSSIVQQERAMEENAHM--EHTSSNSNSNNRSLLS 167
           GA           S    TN + ++DSS VQQE        M   HT SN N N   L S
Sbjct: 253 GAALSTQSASSSGSEHLPTNSSRNLDSSSVQQEEKGRTIQDMLEAHTYSNGNRNGHGLSS 312

Query: 168 MYNTSSGSVEGNFLGQQRGSMQGNGAPRGALPVK 201
            Y++S+GS  G+  GQ R +MQ N AP  ALP+K
Sbjct: 313 AYHSSNGSEGGDCFGQPRENMQLNTAPHRALPIK 346

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449488843|ref|XP_004158189.1| PREDICTED: nuclear transcription factor Y subunit A-9-like [Cucumis sativus]

 Score =  170 bits (431), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 106/213 (49%), Positives = 120/213 (56%), Gaps = 43/213 (20%)

Query: 1   MHQARMPLPLEMEEEPVYVNAKQYRGILRRRQSRAKAELEKKVIKARKVTFHSLKGATIF 60
           +H ARMPLPLEMEEEPVYVNAKQY GILRRRQSRAKAELEKKVIK+RK            
Sbjct: 137 LHHARMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIKSRK------------ 184

Query: 61  YNKTLQGLDTYALFSLQPYLHESRHQHAMRRARGCGGRFLNTKKLN------------DN 108
                            PYLHESRH HAMRRARG GGRFLNTKK N            D+
Sbjct: 185 -----------------PYLHESRHLHAMRRARGSGGRFLNTKKPNNVMSNTNREEDIDS 227

Query: 109 AANSAEKGMNSGADSSKGSTNGTGSVDSSIVQQERAMEENAHMEHTSSNSNSNNRSLLSM 168
            AN + K + S A S    TN  G  ++   Q    M +N  + H   N  SN    LS 
Sbjct: 228 VANHSTKPV-SEAVSKYMVTNEKGIKNTLDEQSREFMTQNMQITHAFFNGKSNVHG-LST 285

Query: 169 YNTSSGSVEGNFLGQQRGSMQGNGAPRGALPVK 201
           Y++  G VEG  L Q   SMQ NGAP+ A+P+K
Sbjct: 286 YSSQLGDVEGGHLDQPHESMQVNGAPQRAIPIK 318

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436305|ref|XP_004135933.1| PREDICTED: nuclear transcription factor Y subunit A-9-like [Cucumis sativus]

 Score =  170 bits (431), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 106/213 (49%), Positives = 120/213 (56%), Gaps = 43/213 (20%)

Query: 1   MHQARMPLPLEMEEEPVYVNAKQYRGILRRRQSRAKAELEKKVIKARKVTFHSLKGATIF 60
           +H ARMPLPLEMEEEPVYVNAKQY GILRRRQSRAKAELEKKVIK+RK            
Sbjct: 137 LHHARMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIKSRK------------ 184

Query: 61  YNKTLQGLDTYALFSLQPYLHESRHQHAMRRARGCGGRFLNTKKLN------------DN 108
                            PYLHESRH HAMRRARG GGRFLNTKK N            D+
Sbjct: 185 -----------------PYLHESRHLHAMRRARGSGGRFLNTKKPNNVMSNTNREEDIDS 227

Query: 109 AANSAEKGMNSGADSSKGSTNGTGSVDSSIVQQERAMEENAHMEHTSSNSNSNNRSLLSM 168
            AN + K + S A S    TN  G  ++   Q    M +N  + H   N  SN    LS 
Sbjct: 228 VANHSTKPV-SEAVSKYMVTNEKGIKNTLDEQSREFMTQNMQITHAFFNGKSNVHG-LST 285

Query: 169 YNTSSGSVEGNFLGQQRGSMQGNGAPRGALPVK 201
           Y++  G VEG  L Q   SMQ NGAP+ A+P+K
Sbjct: 286 YSSQLGDVEGGHLDQPHESMQVNGAPQRAIPIK 318

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147789470|emb|CAN68910.1| hypothetical protein VITISV_000211 [Vitis vinifera]

 Score =  168 bits (426), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 103/186 (55%), Positives = 114/186 (61%), Gaps = 44/186 (23%)

Query: 1   MHQARMPLPLEMEEEPVYVNAKQYRGILRRRQSRAKAELEKKVIKARKVTFHSLKGATIF 60
           MHQ RMPLPLEMEEEPVYVNAKQY GILRRRQSRAKAELEKK IK RK            
Sbjct: 94  MHQPRMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKAIKVRK------------ 141

Query: 61  YNKTLQGLDTYALFSLQPYLHESRHQHAMRRARGCGGRFLNTKKLNDNAAN-SAEKGMNS 119
                            PYLHESRHQHAMRRARGCGGRFLNTKKL++N AN +AEKG  S
Sbjct: 142 -----------------PYLHESRHQHAMRRARGCGGRFLNTKKLDNNDANTTAEKGSVS 184

Query: 120 GA----------DSSKGSTNGTGSVDSSIVQQE---RAMEENAHMEHTSSNSNSNNRSLL 166
           GA           S    TN + ++DSS VQQE   R +++     HT SN N N   L 
Sbjct: 185 GAALSTQSASSSGSEHLPTNSSRNLDSSSVQQEEKGRTIQDMLE-AHTYSNGNRNGHGLS 243

Query: 167 SMYNTS 172
           S Y++S
Sbjct: 244 SAYHSS 249

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224059624|ref|XP_002299939.1| predicted protein [Populus trichocarpa] gi|222847197|gb|EEE84744.1| predicted protein [Populus trichocarpa]

 Score =  167 bits (423), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 100/201 (49%), Positives = 116/201 (57%), Gaps = 45/201 (22%)

Query: 1   MHQARMPLPLEMEEEPVYVNAKQYRGILRRRQSRAKAELEKKVIKARKVTFHSLKGATIF 60
           M  ARMPLPLEMEEEPVYVNAKQ+ GI+RRRQ+RAKAELEKK +K RK            
Sbjct: 1   MTHARMPLPLEMEEEPVYVNAKQFNGIMRRRQARAKAELEKKAVKVRK------------ 48

Query: 61  YNKTLQGLDTYALFSLQPYLHESRHQHAMRRARGCGGRFLNTKKLNDNAANSAEKGMNSG 120
                            PYLHESRHQHAMRRARGCGGRFLNTKKL+ NAAN         
Sbjct: 49  -----------------PYLHESRHQHAMRRARGCGGRFLNTKKLDHNAANPT------- 84

Query: 121 ADSSKGSTNGTGSVDSSIVQQERAMEENAHME-HTSSNSNSNNRSLLSMYNTSSGSVEGN 179
                 S  GTG +DSS   QE        M+ H SSN + N   L S Y++ S   +G+
Sbjct: 85  ------SDKGTGDLDSSGDLQEGKESMVQDMQTHASSNCHGNGNGLSSRYHSLSD--DGS 136

Query: 180 FLGQQRGSMQGNGAPRGALPV 200
           FLGQQ+ +  GNG   G + +
Sbjct: 137 FLGQQKETTHGNGVSNGNVSI 157

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553570|ref|XP_002517826.1| Nuclear transcription factor Y subunit A-1, putative [Ricinus communis] gi|223543098|gb|EEF44633.1| Nuclear transcription factor Y subunit A-1, putative [Ricinus communis]

 Score =  166 bits (419), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 101/212 (47%), Positives = 125/212 (58%), Gaps = 42/212 (19%)

Query: 1   MHQARMPLPLEMEEEPVYVNAKQYRGILRRRQSRAKAELEKKVIKARKVTFHSLKGATIF 60
           MH ARM LPLEMEEEPVYVNAKQ+ GILRRRQ+RAKAE+EKK IKARK            
Sbjct: 154 MHHARMALPLEMEEEPVYVNAKQFNGILRRRQARAKAEIEKKAIKARK------------ 201

Query: 61  YNKTLQGLDTYALFSLQPYLHESRHQHAMRRARGCGGRFLNTKKLNDNAANSA-EKGMNS 119
                            PYLHESRHQHAMRRARGCGGRFL++KK   N  N A +  +NS
Sbjct: 202 -----------------PYLHESRHQHAMRRARGCGGRFLSSKKPESNTKNPASDNDVNS 244

Query: 120 GADSSKGST----------NGTGSVDSSIVQQERAMEENAHMEHTSSNSNSNNRSLLSMY 169
             ++S  S           NGT ++DS+  + + + + +    H+SS+ N N   L S+Y
Sbjct: 245 CINASTRSAILTGSEWLQKNGTRNLDSANGEGKGSTDHDM-QSHSSSHGNGNGHGLSSIY 303

Query: 170 NTSSGS-VEGNFLGQQRGSMQGNGAPRGALPV 200
           + SSG  ++  FL QQR S   NG   GALP+
Sbjct: 304 HPSSGDGLDRGFLVQQRASTHWNGVTNGALPI 335

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224104075|ref|XP_002313307.1| predicted protein [Populus trichocarpa] gi|222849715|gb|EEE87262.1| predicted protein [Populus trichocarpa]

 Score =  165 bits (418), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 100/202 (49%), Positives = 123/202 (60%), Gaps = 48/202 (23%)

Query: 1   MHQARMPLPLEMEEEPVYVNAKQYRGILRRRQSRAKAELEKKVIKARKVTFHSLKGATIF 60
           M  ARMPLPLEMEEEPVYVNAKQ+ GI+RRRQ+RAKAELEKK +K RK            
Sbjct: 156 MPHARMPLPLEMEEEPVYVNAKQFHGIMRRRQARAKAELEKKAVKVRK------------ 203

Query: 61  YNKTLQGLDTYALFSLQPYLHESRHQHAMRRARGCGGRFLNTKKLNDNAAN-SAEKGMNS 119
                            PYLHESRHQHA+RRARGCGGRFLNTKKL+++A N ++EKG+NS
Sbjct: 204 -----------------PYLHESRHQHALRRARGCGGRFLNTKKLDNSATNPTSEKGINS 246

Query: 120 GADSSKGS----------TNGTGSVDSSIVQQERAMEENAHMEHTSSNSNSNNRSLLSMY 169
            A+ SK S          T G+G ++SS         E       SSN + N  +L S Y
Sbjct: 247 VANISKQSYSFSVSECFPTEGSGDLNSS------GDLEEGKGSQASSNGHGNGHALSSRY 300

Query: 170 NTSSGSVEGNFLGQQRGSMQGN 191
           ++SS   +G+FLGQQ+ +  GN
Sbjct: 301 HSSSH--DGSFLGQQKETTHGN 320

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|343157308|gb|AEL95437.1| CCAAT-binding transcription factor subunit B [Populus euphratica]

 Score =  161 bits (408), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 96/201 (47%), Positives = 117/201 (58%), Gaps = 52/201 (25%)

Query: 1   MHQARMPLPLEMEEEPVYVNAKQYRGILRRRQSRAKAELEKKVIKARKVTFHSLKGATIF 60
           M QARMPLPLEMEEEPVYVNAKQ+ GI+RRRQ+RAKAELEKK +K RK            
Sbjct: 156 MPQARMPLPLEMEEEPVYVNAKQFHGIMRRRQARAKAELEKKAVKVRK------------ 203

Query: 61  YNKTLQGLDTYALFSLQPYLHESRHQHAMRRARGCGGRFLNTKKLNDNAAN-SAEKGMNS 119
                            PYLHESRHQHAMRRARGCGGRFLNTKKL++N  N ++EKG   
Sbjct: 204 -----------------PYLHESRHQHAMRRARGCGGRFLNTKKLDNNTTNPTSEKG--- 243

Query: 120 GADSSKGSTNGTGSVDSSIVQQERAMEENAHMEHTSSNSNSNNRSLLSMYNTSSGSVEGN 179
                 G  N +G +            E      +SSN + N  +L S Y++SS   +G+
Sbjct: 244 -----SGDLNSSGDL------------EEGKGSRSSSNGHGNGHALSSRYHSSSH--DGS 284

Query: 180 FLGQQRGSMQGNGAPRGALPV 200
           FLGQQ+ +  GN    GA+ +
Sbjct: 285 FLGQQKETTHGNRVSNGAVSI 305

Source: Populus euphratica

Species: Populus euphratica

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544165|ref|XP_003540525.1| PREDICTED: nuclear transcription factor Y subunit A-9-like [Glycine max]

 Score =  154 bits (388), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 93/191 (48%), Positives = 116/191 (60%), Gaps = 35/191 (18%)

Query: 1   MHQARMPLPLEMEEEPVYVNAKQYRGILRRRQSRAKAELEKKVIKARKVTFHSLKGATIF 60
           MH ARMPLPLEMEEEPVYVNAKQY GILRRRQSRAKAE+EKKVIK RK            
Sbjct: 135 MHHARMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAEIEKKVIKNRK------------ 182

Query: 61  YNKTLQGLDTYALFSLQPYLHESRHQHAMRRARGCGGRFLNTKKLNDNAANS-AEKGMNS 119
                            PYLHESRH HAMRRARG GGRFLNTKKL +N +NS ++KG N+
Sbjct: 183 -----------------PYLHESRHLHAMRRARGNGGRFLNTKKLENNNSNSTSDKGNNT 225

Query: 120 GADSSKGSTNG----TGSVDSSIVQQERAMEENAHMEHTSSNSNSNNRSLLSMYNT-SSG 174
            A++S  S N     T +++       +A  ++ H E + +    N   L ++Y + ++G
Sbjct: 226 RANASTNSPNTQLLFTNNLNLGSSNVSQATVQHMHTEQSFTIGYHNGNGLTALYRSQANG 285

Query: 175 SVEGNFLGQQR 185
             EGN  G++R
Sbjct: 286 KKEGNCFGKER 296

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	201
TAIR|locus:2028150	190	NF-YA7 ""nuclear factor Y, sub	0.283	0.3	0.525	1.1e-22
TAIR|locus:2014375	308	NF-YA5 ""nuclear factor Y, sub	0.313	0.204	0.476	2e-20
TAIR|locus:2182245	272	NF-YA1 ""nuclear factor Y, sub	0.179	0.132	0.75	2.9e-20
TAIR|locus:2032758	341	NF-YA3 ""nuclear factor Y, sub	0.189	0.111	0.631	4.3e-18
TAIR|locus:2007953	328	NF-YA8 ""nuclear factor Y, sub	0.159	0.097	0.718	5.9e-18
TAIR|locus:2144113	269	NF-YA10 ""nuclear factor Y, su	0.338	0.252	0.410	2.5e-17
POMBASE|SPBC725.11c	334	php2 "CCAAT-binding factor com	0.338	0.203	0.44	1e-15
SGD|S000003206	265	HAP2 "Subunit of the Hap2p/3p/	0.298	0.226	0.409	5.8e-14
ASPGD|ASPL0000068816	369	hapB [Emericella nidulans (tax	0.338	0.184	0.402	2.2e-11
TAIR|locus:2088791	303	NF-YA9 ""nuclear factor Y, sub	0.298	0.198	0.507	2.5e-11

TAIR|locus:2028150 NF-YA7 ""nuclear factor Y, subunit A7"" [Arabidopsis thaliana (taxid:3702)]

 Score = 153 (58.9 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
 Identities = 31/59 (52%), Positives = 42/59 (71%)

Query:    75 SLQPYLHESRHQHAMRRARGCGGRFLNTKKLNDNAANSA--EKGMNSGADSSKGSTNGT 131
             S +PYLHESRH HA+RR RGCGGRFLN KK +++  +S+  EK   S   S+  +++GT
Sbjct:   131 SRKPYLHESRHLHAIRRPRGCGGRFLNAKKEDEHHEDSSHEEKSNLSAGKSAMAASSGT 189

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0016602 "CCAAT-binding factor complex" evidence=ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=RCA;IDA

GO:0016036 "cellular response to phosphate starvation" evidence=RCA

GO:0019375 "galactolipid biosynthetic process" evidence=RCA

TAIR|locus:2014375 NF-YA5 ""nuclear factor Y, subunit A5"" [Arabidopsis thaliana (taxid:3702)]

 Score = 156 (60.0 bits), Expect = 2.0e-20, Sum P(2) = 2.0e-20
 Identities = 30/63 (47%), Positives = 41/63 (65%)

Query:    77 QPYLHESRHQHAMRRARGCGGRFLNTKKLNDNAANSAEKGMNSGADSSKGSTNGTGSVDS 136
             +PYLHESRH HA++RARG GGRFLNTKKL +++ +     M +G + S     G   + S
Sbjct:   211 KPYLHESRHLHALKRARGSGGRFLNTKKLQESSNSLCSSQMANGQNFSMSPHGGGSGIGS 270

Query:   137 SIV 139
             S +
Sbjct:   271 SSI 273

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0009738 "abscisic acid mediated signaling pathway" evidence=IMP

GO:0009785 "blue light signaling pathway" evidence=IMP

GO:0009414 "response to water deprivation" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=RCA;IDA

GO:0016036 "cellular response to phosphate starvation" evidence=RCA

GO:0019375 "galactolipid biosynthetic process" evidence=RCA

GO:0009790 "embryo development" evidence=IMP

GO:0010262 "somatic embryogenesis" evidence=IMP

GO:0048316 "seed development" evidence=IMP

TAIR|locus:2182245 NF-YA1 ""nuclear factor Y, subunit A1"" [Arabidopsis thaliana (taxid:3702)]

 Score = 134 (52.2 bits), Expect = 2.9e-20, Sum P(2) = 2.9e-20
 Identities = 27/36 (75%), Positives = 31/36 (86%)

Query:    17 VYVNAKQYRGILRRRQSRAKAELEKKVIKARKVTFH 52
             VYVNAKQY GILRRR++RAKAELE+KVI+ RK   H
Sbjct:   174 VYVNAKQYEGILRRRKARAKAELERKVIRDRKPYLH 209

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;IGI;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0010262 "somatic embryogenesis" evidence=IMP

GO:0048316 "seed development" evidence=IMP

GO:0055046 "microgametogenesis" evidence=IMP

TAIR|locus:2032758 NF-YA3 ""nuclear factor Y, subunit A3"" [Arabidopsis thaliana (taxid:3702)]

 Score = 131 (51.2 bits), Expect = 4.3e-18, Sum P(2) = 4.3e-18
 Identities = 24/38 (63%), Positives = 29/38 (76%)

Query:    78 PYLHESRHQHAMRRARGCGGRFLNTKKLNDNAANSAEK 115
             PYLHESRH HA++R RG GGRFLNTKKL   +  +A +
Sbjct:   214 PYLHESRHVHALKRPRGSGGRFLNTKKLLQESEQAAAR 251

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;IGI;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2007953 NF-YA8 ""nuclear factor Y, subunit A8"" [Arabidopsis thaliana (taxid:3702)]

 Score = 132 (51.5 bits), Expect = 5.9e-18, Sum P(2) = 5.9e-18
 Identities = 23/32 (71%), Positives = 28/32 (87%)

Query:    77 QPYLHESRHQHAMRRARGCGGRFLNTKKLNDN 108
             +PYLHESRH HA++R RG GGRFLNTKKL ++
Sbjct:   205 KPYLHESRHVHALKRPRGSGGRFLNTKKLQES 236

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

TAIR|locus:2144113 NF-YA10 ""nuclear factor Y, subunit A10"" [Arabidopsis thaliana (taxid:3702)]

 Score = 130 (50.8 bits), Expect = 2.5e-17, Sum P(2) = 2.5e-17
 Identities = 30/73 (41%), Positives = 44/73 (60%)

Query:    77 QPYLHESRHQHAMRRARGCGGRFLNTKKLNDNAANSAEKGMNSGADSSKGSTNGTGSVDS 136
             +PY+H SRH HAMRR RG GGRFLNTK      A++A++   S + SS+       +++S
Sbjct:   164 KPYMHHSRHLHAMRRPRGSGGRFLNTK-----TADAAKQSKPSNSQSSEVFHPENETINS 218

Query:   137 SIVQQERAMEENA 149
             S    E  + ++A
Sbjct:   219 SREANESNLSDSA 231

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0009718 "anthocyanin-containing compound biosynthetic process" evidence=RCA

POMBASE|SPBC725.11c php2 "CCAAT-binding factor complex subunit Php2" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 142 (55.0 bits), Expect = 1.0e-15, Sum P(2) = 1.0e-15
 Identities = 33/75 (44%), Positives = 46/75 (61%)

Query:    65 LQGLDTYALFSLQPYLHESRHQHAMRRARGCGGRFLNTKKLND-NAANSAEKGMNSGADS 123
             L+G+ T    + +PYLHESRH+HAMRR RG GGRFL   K++   A  +AE   N G  S
Sbjct:    34 LRGVQT----TKKPYLHESRHKHAMRRPRGPGGRFLTADKVSKLRAQEAAEAAANGG--S 87

Query:   124 SKGSTNGTGSVDSSI 138
             +    N T + D+++
Sbjct:    88 TGDDVNATNANDATV 102

GO:0000978 "RNA polymerase II core promoter proximal region sequence-specific DNA binding" evidence=IMP;TAS

GO:0001077 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription" evidence=IC;IDA;IMP

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0006109 "regulation of carbohydrate metabolic process" evidence=ISO

GO:0016602 "CCAAT-binding factor complex" evidence=ISO

GO:0033217 "regulation of transcription from RNA polymerase II promoter in response to iron ion starvation" evidence=IMP

GO:0043565 "sequence-specific DNA binding" evidence=IDA

SGD|S000003206 HAP2 "Subunit of the Hap2p/3p/4p/5p CCAAT-binding complex" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 127 (49.8 bits), Expect = 5.8e-14, Sum P(2) = 5.8e-14
 Identities = 27/66 (40%), Positives = 38/66 (57%)

Query:    77 QPYLHESRHQHAMRRARGCGGRFLNTKKLNDNAANSAEKGMNSGADSSKGSTNGTGSVDS 136
             +PYLHESRH+HAMRR RG GGRFL   ++       A K   SGA      ++    + +
Sbjct:   192 KPYLHESRHKHAMRRPRGEGGRFLTAAEIK------AMKSKKSGASDDPDDSHEDKKITT 245

Query:   137 SIVQQE 142
              I+Q++
Sbjct:   246 KIIQEQ 251

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0003677 "DNA binding" evidence=IEA

GO:0001077 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription" evidence=IDA

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;IDA;IPI

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0000978 "RNA polymerase II core promoter proximal region sequence-specific DNA binding" evidence=IDA

GO:0000436 "carbon catabolite activation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0043457 "regulation of cellular respiration" evidence=IMP

ASPGD|ASPL0000068816 hapB [Emericella nidulans (taxid:162425)]

 Score = 125 (49.1 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
 Identities = 29/72 (40%), Positives = 39/72 (54%)

Query:    77 QPYLHESRHQHAMRRARGCGGRFLNTKKLNDNAANSAEKGMNSGADSSKGSTNGTGSVDS 136
             +PYLHESRH HAMRR RG GGRFL      D  A   +K    G +++  + +   S  S
Sbjct:   266 KPYLHESRHNHAMRRPRGPGGRFLTA----DEVAAMEKKNAAGGQENADPNASKAVSDSS 321

Query:   137 SIVQQERAMEEN 148
                Q+ +A + N
Sbjct:   322 PASQKRKASDGN 333

GO:0005634 "nucleus" evidence=IDA

GO:0003677 "DNA binding" evidence=IMP;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IMP

GO:0016602 "CCAAT-binding factor complex" evidence=IDA

GO:0006351 "transcription, DNA-dependent" evidence=IMP

GO:0006109 "regulation of carbohydrate metabolic process" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0016584 "nucleosome positioning" evidence=IMP

GO:0051170 "nuclear import" evidence=IEA

TAIR|locus:2088791 NF-YA9 ""nuclear factor Y, subunit A9"" [Arabidopsis thaliana (taxid:3702)]

 Score = 139 (54.0 bits), Expect = 2.5e-11, Sum P(2) = 2.5e-11
 Identities = 32/63 (50%), Positives = 38/63 (60%)

Query:    68 LDTYALFSLQPYLHESRHQHAMRRARGCGGRFLNTKKLNDNAAN-SAEKGMNSGADSSKG 126
             L+   + S +PYLHESRHQHAMRR RG GGRF   KK N  A+   AE+  N     S  
Sbjct:   190 LEKKLIKSRKPYLHESRHQHAMRRPRGTGGRF--AKKTNTEASKRKAEEKSNGHVTQSPS 247

Query:   127 STN 129
             S+N
Sbjct:   248 SSN 250

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0009555 "pollen development" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0009790 "embryo development" evidence=IMP

GO:0010262 "somatic embryogenesis" evidence=IMP

GO:0048316 "seed development" evidence=IMP

GO:0055046 "microgametogenesis" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	201
smart00521	62	smart00521, CBF, CCAAT-Binding transcription Facto	1e-27
pfam02045	57	pfam02045, CBFB_NFYA, CCAAT-binding transcription	2e-27
COG5224	248	COG5224, HAP2, CCAAT-binding factor, subunit B [Tr	6e-05

>gnl|CDD|128795 smart00521, CBF, CCAAT-Binding transcription Factor

 Score = 98.6 bits (246), Expect = 1e-27
 Identities = 48/91 (52%), Positives = 51/91 (56%), Gaps = 29/91 (31%)

Query: 12  MEEEPVYVNAKQYRGILRRRQSRAKAELEKKVIKARKVTFHSLKGATIFYNKTLQGLDTY 71
            EEEPVYVNAKQY  ILRRRQ+RAK E + K+ K RK                       
Sbjct: 1   AEEEPVYVNAKQYHRILRRRQARAKLEAQGKLPKERK----------------------- 37

Query: 72  ALFSLQPYLHESRHQHAMRRARGCGGRFLNT 102
                 PYLHESRH HAMRR RG GGRFLNT
Sbjct: 38  ------PYLHESRHLHAMRRPRGSGGRFLNT 62

Length = 62

>gnl|CDD|190198 pfam02045, CBFB_NFYA, CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

 Score = 97.8 bits (244), Expect = 2e-27
 Identities = 44/86 (51%), Positives = 50/86 (58%), Gaps = 29/86 (33%)

Query: 14 EEPVYVNAKQYRGILRRRQSRAKAELEKKVIKARKVTFHSLKGATIFYNKTLQGLDTYAL 73
          +EP+YVNAKQY  ILRRRQ+RAK E E K+IK+RK                         
Sbjct: 1  DEPIYVNAKQYHRILRRRQARAKLEAENKLIKSRK------------------------- 35

Query: 74 FSLQPYLHESRHQHAMRRARGCGGRF 99
              PYLHESRH+HAMRR RG GGRF
Sbjct: 36 ----PYLHESRHKHAMRRPRGSGGRF 57

Length = 57

>gnl|CDD|227549 COG5224, HAP2, CCAAT-binding factor, subunit B [Transcription]

 Score = 42.1 bits (98), Expect = 6e-05
 Identities = 34/118 (28%), Positives = 40/118 (33%), Gaps = 34/118 (28%)

Query: 14  EEPVYVNAKQYRGILRRRQSRAKAELEKKVIKARKVTFHSLKGATIFYNKTLQGLDTYAL 73
            +P YVNAKQ   I +R   R    L+  V   R                          
Sbjct: 158 FQPDYVNAKQGNEISKRPGLRVY--LDDSVSAGRAF------------------------ 191

Query: 74  FSLQPYLHESRHQHAMRRARGCGGRFL---NTKKLNDNAANSAEKGMNSGADSSKGST 128
                YLHESRH+HAM R R   GRFL       LN          +      S GS+
Sbjct: 192 -----YLHESRHKHAMLRVRDPTGRFLTASEIDPLNLTGNTQDSMIIGQQTYPSHGSS 244

Length = 248

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	201
KOG1561	307	consensus CCAAT-binding factor, subunit B (HAP2) [	100.0
smart00521	62	CBF CCAAT-Binding transcription Factor.	100.0
PF02045	58	CBFB_NFYA: CCAAT-binding transcription factor (CBF	100.0
COG5224	248	HAP2 CCAAT-binding factor, subunit B [Transcriptio	99.83

>KOG1561 consensus CCAAT-binding factor, subunit B (HAP2) [Transcription]

Probab=100.00  E-value=3.7e-38  Score=279.02  Aligned_cols=78  Identities=69%  Similarity=1.053  Sum_probs=73.8

Q ss_pred             CCCCCCCCCCC-CceeechhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccchhhhhcccccchhhhhcccCCchhh
Q 028946            4 ARMPLPLEMEE-EPVYVNAKQYRGILRRRQSRAKAELEKKVIKARKVTFHSLKGATIFYNKTLQGLDTYALFSLQPYLHE   82 (201)
Q Consensus         4 ~r~~LP~~~~e-ePiYVNAKQY~rILrRR~aRAk~E~e~k~~k~Rk~~~~~~~~~t~~~~~~~~gld~~~~~~kqpYLHE   82 (201)
                      .|+|||.++.| ||||||||||++|||||++|||+|+++||||.||                             |||||
T Consensus       172 ~r~pLP~~~~e~ePl~VNaKQY~~IlrRRq~RaKlEa~~klik~Rk-----------------------------pYLHE  222 (307)
T KOG1561|consen  172 DRTPLPQTDSETEPLYVNAKQYHRILRRRQARAKLEATTKLIKARK-----------------------------PYLHE  222 (307)
T ss_pred             CcccCCccccCCCceeEcHHHHHHHHHHHHHHhhhhhcccchhhcC-----------------------------ccccc
Confidence            79999999955 9999999999999999999999999999999999                             99999


Q ss_pred             hhhHHhhhccCCCCCccccccccchhhh
Q 028946           83 SRHQHAMRRARGCGGRFLNTKKLNDNAA  110 (201)
Q Consensus        83 SRHkHAmrR~RG~GGRFLt~ke~~~~~~  110 (201)
                      |||+|||||+||+|||||++||..+...
T Consensus       223 SRH~HAmkR~RG~GGRFln~k~~~~~ss  250 (307)
T KOG1561|consen  223 SRHLHAMKRARGEGGRFLNTKEYHDDSS  250 (307)
T ss_pred             hhhHHHhhcccCCCCCCCchhhhhhhcc
Confidence            9999999999999999999999776554

>smart00521 CBF CCAAT-Binding transcription Factor

Probab=100.00  E-value=2.8e-38  Score=227.70  Aligned_cols=62  Identities=77%  Similarity=1.142  Sum_probs=60.0

Q ss_pred             CCCCceeechhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccchhhhhcccccchhhhhcccCCchhhhhhHHhhhc
Q 028946           12 MEEEPVYVNAKQYRGILRRRQSRAKAELEKKVIKARKVTFHSLKGATIFYNKTLQGLDTYALFSLQPYLHESRHQHAMRR   91 (201)
Q Consensus        12 ~~eePiYVNAKQY~rILrRR~aRAk~E~e~k~~k~Rk~~~~~~~~~t~~~~~~~~gld~~~~~~kqpYLHESRHkHAmrR   91 (201)
                      ++++|||||||||++|||||++|||+|+++++++.||                             ||||||||+|||+|
T Consensus         1 ~~~~piyVNaKQy~~IlrRR~~Rak~e~~~kl~~~rk-----------------------------pYlhESRH~HAm~R   51 (62)
T smart00521        1 AEEEPVYVNAKQYHRILRRRQARAKLEAQGKLPKERK-----------------------------PYLHESRHLHAMRR   51 (62)
T ss_pred             CCCcceeEcHHHHHHHHHHHHHHHHHHHhcchhhccC-----------------------------CcccchhHHHHHcc
Confidence            5789999999999999999999999999999999988                             99999999999999


Q ss_pred             cCCCCCccccc
Q 028946           92 ARGCGGRFLNT  102 (201)
Q Consensus        92 ~RG~GGRFLt~  102 (201)
                      +||+||||||+
T Consensus        52 ~Rg~gGRFl~~   62 (62)
T smart00521       52 PRGSGGRFLNT   62 (62)
T ss_pred             CcCCCCCCCCC
Confidence            99999999985

>PF02045 CBFB_NFYA: CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B; InterPro: IPR001289 The CCAAT-binding factor (CBFB/NF-YA) is a mammalian transcription factor that binds to a CCAAT motif in the promoters of a wide variety of genes, including type I collagen and albumin []

Probab=100.00  E-value=1.9e-35  Score=210.67  Aligned_cols=57  Identities=77%  Similarity=1.171  Sum_probs=55.5

Q ss_pred             CCceeechhhhHHHHHHHHHHHHHHHHHHH-HHhhhhhhcccccchhhhhcccccchhhhhcccCCchhhhhhHHhhhcc
Q 028946           14 EEPVYVNAKQYRGILRRRQSRAKAELEKKV-IKARKVTFHSLKGATIFYNKTLQGLDTYALFSLQPYLHESRHQHAMRRA   92 (201)
Q Consensus        14 eePiYVNAKQY~rILrRR~aRAk~E~e~k~-~k~Rk~~~~~~~~~t~~~~~~~~gld~~~~~~kqpYLHESRHkHAmrR~   92 (201)
                      |+|||||||||++|||||++|||+|+++++ ++.||                             ||||||||+|||+|+
T Consensus         1 ~~piyVNaKQY~rIlrRR~~Rakle~~~k~~~~~rk-----------------------------~YlheSRH~HA~~R~   51 (58)
T PF02045_consen    1 EEPIYVNAKQYHRILRRRQARAKLEAEGKLSPKKRK-----------------------------PYLHESRHKHAMRRP   51 (58)
T ss_pred             CCCeeECHHHHHHHHHHHHHHHHHHHhCCcchhhhH-----------------------------HHHHHHHHHHHHcCc
Confidence            689999999999999999999999999999 88888                             999999999999999


Q ss_pred             CCCCCcc
Q 028946           93 RGCGGRF   99 (201)
Q Consensus        93 RG~GGRF   99 (201)
                      ||+||||
T Consensus        52 Rg~gGRF   58 (58)
T PF02045_consen   52 RGPGGRF   58 (58)
T ss_pred             cCCCCCC
Confidence            9999999

The factor is a heteromeric complex of A and B subunits, both of which are required for DNA-binding []. The subunits can interact in the absence of DNA-binding, conserved regions in each being important in mediating this interaction. The B subunit contains a region of similarity with the yeast protein HAP2 []. For the B subunit it has been suggested that the N-terminal portion of the conserved region is involved in subunit interaction and the C-terminal region involved in DNA-binding [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG5224 HAP2 CCAAT-binding factor, subunit B [Transcription]

Probab=99.83  E-value=1.7e-21  Score=169.11  Aligned_cols=66  Identities=42%  Similarity=0.540  Sum_probs=59.1

Q ss_pred             CCCceeechhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccchhhhhcccccchhhhhcccCCchhhhhhHHhhhcc
Q 028946           13 EEEPVYVNAKQYRGILRRRQSRAKAELEKKVIKARKVTFHSLKGATIFYNKTLQGLDTYALFSLQPYLHESRHQHAMRRA   92 (201)
Q Consensus        13 ~eePiYVNAKQY~rILrRR~aRAk~E~e~k~~k~Rk~~~~~~~~~t~~~~~~~~gld~~~~~~kqpYLHESRHkHAmrR~   92 (201)
                      .++|+|||||||++|+|||-+|++++.  +++-.|.                             .|||||||+|||+|+
T Consensus       157 sfqp~Yvnakq~n~i~kr~~~r~~ld~--~~~~~r~-----------------------------~ylHesrhkham~r~  205 (248)
T COG5224         157 SFQPDYVNAKQGNEISKRPGLRVYLDD--SVSAGRA-----------------------------FYLHESRHKHAMLRV  205 (248)
T ss_pred             ccCcchhhhhhhhHHhcchhHHHHHHH--Hhhhhhh-----------------------------hccccchhhhhhhcc
Confidence            578999999999999999999999875  4556666                             799999999999999


Q ss_pred             CCCCCccccccccchhh
Q 028946           93 RGCGGRFLNTKKLNDNA  109 (201)
Q Consensus        93 RG~GGRFLt~ke~~~~~  109 (201)
                      |+|+|||||+.|++...
T Consensus       206 r~ptgrfLtasEi~~ln  222 (248)
T COG5224         206 RDPTGRFLTASEIDPLN  222 (248)
T ss_pred             cCCCcceecHHhhhhhh
Confidence            99999999999987654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	201
4awl_A	78	The Nf-y Transcription Factor Is Structurally And F		1e-10
4g91_A	64	Ccaat-Binding Complex From Aspergillus Nidulans Len		1e-08

>pdb|4AWL|A Chain A, The Nf-y Transcription Factor Is Structurally And Functionally A Sequence Specific Histone Length = 78

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/87 (43%), Positives = 45/87 (51%), Gaps = 29/87 (33%)
Query: 17  VYVNAKQYRGILRRRQSRAKAELEKKVIKARKVTFHSLKGATIFYNKTLQGLDTYALFSL 76
           +YVNAKQY  IL+RRQ+RAK E E K+ K R+                            
Sbjct: 5   LYVNAKQYHRILKRRQARAKLEAEGKIPKERRK--------------------------- 37
Query: 77  QPYLHESRHQHAMRRARGCGGRFLNTK 103
             YLHESRH+HAM R RG GGRF + K
Sbjct: 38  --YLHESRHRHAMARKRGEGGRFFSPK 62

>pdb|4G91|A Chain A, Ccaat-Binding Complex From Aspergillus Nidulans Length = 64

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 43/86 (50%), Gaps = 30/86 (34%)
Query: 17  VYVNAKQYRGILRRRQSRAKAELEKKVI-KARKVTFHSLKGATIFYNKTLQGLDTYALFS 75
           +YVNAKQ+  IL+RR +R K E + ++  K RK                           
Sbjct: 5   LYVNAKQFHRILKRRVARQKLEEQLRLTSKGRK--------------------------- 37
Query: 76  LQPYLHESRHQHAMRRARGCGGRFLN 101
             PYLHESRH HAMRR RG GGRFL 
Sbjct: 38  --PYLHESRHNHAMRRPRGPGGRFLT 61
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	201
4g92_A	64	HAPB protein; transcription factor, nucleosome, mi	100.0

>4g92_A HAPB protein; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Emericella nidulans} PDB: 4g91_A*

Probab=100.00  E-value=4.2e-38  Score=226.85  Aligned_cols=62  Identities=61%  Similarity=1.011  Sum_probs=57.0

Q ss_pred             CCceeechhhhHHHHHHHHHHHHHHHHHHHH-HhhhhhhcccccchhhhhcccccchhhhhcccCCchhhhhhHHhhhcc
Q 028946           14 EEPVYVNAKQYRGILRRRQSRAKAELEKKVI-KARKVTFHSLKGATIFYNKTLQGLDTYALFSLQPYLHESRHQHAMRRA   92 (201)
Q Consensus        14 eePiYVNAKQY~rILrRR~aRAk~E~e~k~~-k~Rk~~~~~~~~~t~~~~~~~~gld~~~~~~kqpYLHESRHkHAmrR~   92 (201)
                      |+|||||||||++||+||++|||+|++++++ +.||                             ||||||||+|||+|+
T Consensus         2 eePiyVNaKQy~~IlrRR~~Rakle~~~kl~~~~rk-----------------------------~YlhESRH~HAm~R~   52 (64)
T 4g92_A            2 ESPLYVNAKQFHRILKRRVARQKLEEQLRLTSKGRK-----------------------------PYLHESRHNHAMRRP   52 (64)
T ss_dssp             -CCSCCCTTTHHHHHHHHHHHHHHHHHTTCCSSSCC-----------------------------SCSCHHHHHHHHHSC
T ss_pred             CCCeeECHHHHHHHHHHHHHHHHHHHhCCccccccc-----------------------------CcchhHHHHHHhcCC
Confidence            7999999999999999999999999999874 5666                             999999999999999


Q ss_pred             CCCCCccccccc
Q 028946           93 RGCGGRFLNTKK  104 (201)
Q Consensus        93 RG~GGRFLt~ke  104 (201)
                      ||+||||||++|
T Consensus        53 Rg~gGRFl~~~e   64 (64)
T 4g92_A           53 RGPGGRFLTADE   64 (64)
T ss_dssp             BCTTSCBCCCC-
T ss_pred             cCCCCccccCCC
Confidence            999999999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00