Citrus Sinensis ID: 028963

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-
MATSKCSSYEKYEIRKRNPNPKSSVLLVIDMQNHFSSIAKPILDNTLATVQLCRRASIPVFFTRHCHKSPADYGMLGEWWNGDLVYDGTADAELLPEIKGLVAGADEVIEKNTYSAFGNTRLQERLVGMGVEEVIVCGVMTNLCCETTARDAFVRGFRVFFSTDATATSDLELHEATLKNLAYGFAYLFDCERLEAGLFGP
ccccccccccccccccccccccccEEEEEccccccccccHHHHHHHHHHHHHHHHccccEEEEEccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccHHHHHHHccccEEEEEEcccccHHHHHHHHHHHcccEEEEEccccccccHHHHHHHHHHHHccccEEEcHHHHHHHHccc
ccccccccccccccccccccHHcEEEEEEEHHHHHcccHHHHHHHHHHHHHHHHHccccEEEEcccccccHHcccHHHccccccccccccccHHHHHHccccccccEEEccccccccccccHHHHHHHccccEEEEEEEccccHHHHHHHHHHHcccEEEEEEEEEEcccHHHHHHHHHHHHHHccEEccHHHHHHHHccc
matskcssyekyeirkrnpnpkssVLLVIDMQNhfssiakpildntLATVQLCrrasipvfftrhchkspadygmlgewwngdlvydgtadaellPEIKGLVAGADEVIekntysafgnTRLQERLVGMGVEEVIVCGVMTNLCCETTARDAFVRGFRVffstdatatsdLELHEATLKNLAYGFAYLFDCERLEAGLFGP
matskcssyekyeirkrnpnpkssVLLVIDMQNHFSSIAKPILDNTLATVQLCRRASIPVFFTRHCHKSPADYGMLGEWWNGDLVYDGTADAELLPEIKGLVAGADEVIEKntysafgntrLQERLVGMGVEEVIVCGVMTNLCCETTARDAFVRGFRVFFSTDATATSDLELHEATLKNLAYGFAYLFDCERLEAGLFGP
MATSKCSSYEKYEIRKRNPNPKSSVLLVIDMQNHFSSIAKPILDNTLATVQLCRRASIPVFFTRHCHKSPADYGMLGEWWNGDLVYDGTADAELLPEIKGLVAGADEVIEKNTYSAFGNTRLQERLVGMGVEEVIVCGVMTNLCCETTARDAFVRGFRVFFSTDATATSDLELHEATLKNLAYGFAYLFDCERLEAGLFGP
************************VLLVIDMQNHFSSIAKPILDNTLATVQLCRRASIPVFFTRHCHKSPADYGMLGEWWNGDLVYDGTADAELLPEIKGLVAGADEVIEKNTYSAFGNTRLQERLVGMGVEEVIVCGVMTNLCCETTARDAFVRGFRVFFSTDATATSDLELHEATLKNLAYGFAYLFDCERLEAGL***
*AT*K*SSYEKYEIRKRNPNPKSSVLLVIDMQNHFSSIAKPILDNTLATVQLCRRASIPVFFTRHCHKSPADYGML*EWWNGDLVYDGTADAELLPEIKGLVAGADEVIEKNTYSAFGNTRLQERLVGMGVEEVIVCGVMTNLCCETTARDAFVRGFRVFFSTDATATSDLELHEATLKNLAYGFAYLFDCERLEAGLFGP
MATSKCSSYEKYEIRKRNPNPKSSVLLVIDMQNHFSSIAKPILDNTLATVQLCRRASIPVFFTRHCHKSPADYGMLGEWWNGDLVYDGTADAELLPEIKGLVAGADEVIEKNTYSAFGNTRLQERLVGMGVEEVIVCGVMTNLCCETTARDAFVRGFRVFFSTDATATSDLELHEATLKNLAYGFAYLFDCERLEAGLFGP
*ATSKCSSYEKYEIRKRNPNPKSSVLLVIDMQNHFSSIAKPILDNTLATVQLCRRASIPVFFTRHCHKSPADYGMLGEWWNGDLVYDGTADAELLPEIKGLVAGADEVIEKNTYSAFGNTRLQERLVGMGVEEVIVCGVMTNLCCETTARDAFVRGFRVFFSTDATATSDLELHEATLKNLAYGFAYLFDCERLEAGLFG*
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MATSKCSSYEKYEIRKRNPNPKSSVLLVIDMQNHFSSIAKPILDNTLATVQLCRRASIPVFFTRHCHKSPADYGMLGEWWNGDLVYDGTADAELLPEIKGLVAGADEVIEKNTYSAFGNTRLQERLVGMGVEEVIVCGVMTNLCCETTARDAFVRGFRVFFSTDATATSDLELHEATLKNLAYGFAYLFDCERLEAGLFGP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query201 2.2.26 [Sep-21-2011]
P0ADI6285 Isochorismatase OS=Shigel yes no 0.885 0.624 0.297 2e-14
P0ADI4285 Isochorismatase OS=Escher N/A no 0.885 0.624 0.297 2e-14
P0ADI5285 Isochorismatase OS=Escher N/A no 0.885 0.624 0.297 2e-14
P45743312 Isochorismatase OS=Bacill yes no 0.771 0.496 0.319 2e-14
Q6FFZ6245 Peroxyureidoacrylate/urei yes no 0.845 0.693 0.285 5e-14
Q0TJ56230 Peroxyureidoacrylate/urei no no 0.850 0.743 0.269 4e-11
P94573189 Uncharacterized isochoris no no 0.427 0.455 0.409 5e-11
B6I987230 Peroxyureidoacrylate/urei no no 0.850 0.743 0.269 5e-11
C8U5H3230 Peroxyureidoacrylate/urei no no 0.850 0.743 0.269 5e-11
D3QPK4244 Peroxyureidoacrylate/urei no no 0.850 0.700 0.269 6e-11
>sp|P0ADI6|ENTB_SHIFL Isochorismatase OS=Shigella flexneri GN=entB PE=3 SV=1 Back     alignment and function desciption
 Score = 79.3 bits (194), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/198 (29%), Positives = 98/198 (49%), Gaps = 20/198 (10%)

Query: 1   MATSKCSSY---EKYEIRKRNPN----PKSSVLLVIDMQNHFSSIAK---PILDNTLATV 50
           MA  K  +Y   E ++I +   +    P+ + LL+ DMQ++F S      P+++  +A +
Sbjct: 1   MAIPKLQAYALPESHDIPQNKVDWAFEPQRAALLIHDMQDYFVSFWGENCPMMEQVIANI 60

Query: 51  ----QLCRRASIPVFFTRHC-HKSPADYGMLGEWWNGDLVYDGTADAELLPEIKGLVAGA 105
                 C++ +IPV++T     +S  D  +L + W   L    T   E    +  L   A
Sbjct: 61  AALRDYCKQHNIPVYYTAQPKEQSDEDRALLNDMWGPGL----TRSPEQQKVVDRLTPDA 116

Query: 106 DE-VIEKNTYSAFGNTRLQERLVGMGVEEVIVCGVMTNLCCETTARDAFVRGFRVFFSTD 164
           D+ V+ K  YSAF  + L++ L   G  ++I+ GV  ++ C TTA DAF+R  + F   D
Sbjct: 117 DDTVLVKWRYSAFHRSPLEQMLKESGRNQLIITGVYAHIGCMTTATDAFMRDIKPFMVAD 176

Query: 165 ATATSDLELHEATLKNLA 182
           A A    + H  +LK +A
Sbjct: 177 ALADFSRDEHLMSLKYVA 194
Required for production of 2,3-DHB. Also serves as an aryl carrier protein and plays a role in enterobactin assembly.
Shigella flexneri (taxid: 623)
EC: 3EC: .EC: 3EC: .EC: 2EC: .EC: 1
>sp|P0ADI4|ENTB_ECOLI Isochorismatase OS=Escherichia coli (strain K12) GN=entB PE=1 SV=1 Back     alignment and function description
>sp|P0ADI5|ENTB_ECO57 Isochorismatase OS=Escherichia coli O157:H7 GN=entB PE=3 SV=1 Back     alignment and function description
>sp|P45743|DHBB_BACSU Isochorismatase OS=Bacillus subtilis (strain 168) GN=dhbB PE=1 SV=1 Back     alignment and function description
>sp|Q6FFZ6|RUTB_ACIAD Peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB OS=Acinetobacter sp. (strain ADP1) GN=rutB PE=3 SV=1 Back     alignment and function description
>sp|Q0TJ56|RUTB_ECOL5 Peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=rutB PE=3 SV=1 Back     alignment and function description
>sp|P94573|YWOC_BACSU Uncharacterized isochorismatase family protein YwoC OS=Bacillus subtilis (strain 168) GN=ywoC PE=3 SV=2 Back     alignment and function description
>sp|B6I987|RUTB_ECOSE Peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB OS=Escherichia coli (strain SE11) GN=rutB PE=3 SV=1 Back     alignment and function description
>sp|C8U5H3|RUTB_ECO10 Peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB OS=Escherichia coli O103:H2 (strain 12009 / EHEC) GN=rutB PE=3 SV=1 Back     alignment and function description
>sp|D3QPK4|RUTB_ECOCB Peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB OS=Escherichia coli O55:H7 (strain CB9615 / EPEC) GN=rutB PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query201
255580160202 Isochorismatase, putative [Ricinus commu 0.990 0.985 0.795 4e-89
189014930179 isochorismatase hydrolase [Mangifera ind 0.890 1.0 0.838 2e-85
224119884201 predicted protein [Populus trichocarpa] 0.960 0.960 0.768 4e-84
15237258198 nicotinamidase 2 [Arabidopsis thaliana] 0.965 0.979 0.721 9e-81
297812467198 isochorismatase hydrolase family protein 0.960 0.974 0.711 2e-79
356532235202 PREDICTED: isochorismatase-like [Glycine 0.965 0.960 0.719 3e-79
15237256198 nicotinamidase 3 [Arabidopsis thaliana] 0.965 0.979 0.706 3e-79
357438895203 Isochorismatase [Medicago truncatula] gi 0.945 0.935 0.703 3e-76
102139936197 isochorismatase hydrolase family protein 0.940 0.959 0.732 5e-76
225465680198 PREDICTED: isochorismatase-like isoform 0.970 0.984 0.720 8e-75
>gi|255580160|ref|XP_002530911.1| Isochorismatase, putative [Ricinus communis] gi|223529505|gb|EEF31460.1| Isochorismatase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  332 bits (852), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 159/200 (79%), Positives = 176/200 (88%), Gaps = 1/200 (0%)

Query: 1   MATSKCSSYEKYEIRKRNPNPKSSVLLVIDMQNHFSSIAKPILDNTLATVQLCRRASIPV 60
           MAT   SSY+KYEIR+R+P+PK SVLLV+D QN+FSS+ KPIL N L T+ LCRRASIPV
Sbjct: 1   MATRCPSSYKKYEIRRRDPDPKFSVLLVVDAQNYFSSMVKPILPNLLQTIDLCRRASIPV 60

Query: 61  FFTRHCHKSPADYGMLGEWWNGDLVYDGTADAELLPEIKGLVAGAD-EVIEKNTYSAFGN 119
           FFTRH HKSPADYGMLGEWWN DL+ DGT +++L+PEIK LV G D EV+EKNTYSAF N
Sbjct: 61  FFTRHRHKSPADYGMLGEWWNNDLIIDGTVESQLVPEIKRLVLGKDHEVVEKNTYSAFTN 120

Query: 120 TRLQERLVGMGVEEVIVCGVMTNLCCETTARDAFVRGFRVFFSTDATATSDLELHEATLK 179
           TRL ERL+ MGVEEVIV GVMTNLCCETTARDAFVRGFRVFFSTDATATSDLELHEATLK
Sbjct: 121 TRLHERLLEMGVEEVIVTGVMTNLCCETTARDAFVRGFRVFFSTDATATSDLELHEATLK 180

Query: 180 NLAYGFAYLFDCERLEAGLF 199
           NLAYGFAY+ DC+RLE GLF
Sbjct: 181 NLAYGFAYMVDCQRLENGLF 200

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|189014930|gb|ACD69674.1| isochorismatase hydrolase [Mangifera indica] Back     alignment and taxonomy information
>gi|224119884|ref|XP_002331086.1| predicted protein [Populus trichocarpa] gi|222872814|gb|EEF09945.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|15237258|ref|NP_197714.1| nicotinamidase 2 [Arabidopsis thaliana] gi|10177812|dbj|BAB11178.1| unnamed protein product [Arabidopsis thaliana] gi|28466925|gb|AAO44071.1| At5g23230 [Arabidopsis thaliana] gi|110743859|dbj|BAE99764.1| hypothetical protein [Arabidopsis thaliana] gi|332005756|gb|AED93139.1| nicotinamidase 2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297812467|ref|XP_002874117.1| isochorismatase hydrolase family protein [Arabidopsis lyrata subsp. lyrata] gi|297319954|gb|EFH50376.1| isochorismatase hydrolase family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356532235|ref|XP_003534679.1| PREDICTED: isochorismatase-like [Glycine max] Back     alignment and taxonomy information
>gi|15237256|ref|NP_197713.1| nicotinamidase 3 [Arabidopsis thaliana] gi|10177811|dbj|BAB11177.1| unnamed protein product [Arabidopsis thaliana] gi|27754578|gb|AAO22736.1| unknown protein [Arabidopsis thaliana] gi|28393855|gb|AAO42335.1| unknown protein [Arabidopsis thaliana] gi|332005755|gb|AED93138.1| nicotinamidase 3 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|357438895|ref|XP_003589724.1| Isochorismatase [Medicago truncatula] gi|355478772|gb|AES59975.1| Isochorismatase [Medicago truncatula] Back     alignment and taxonomy information
>gi|102139936|gb|ABF70079.1| isochorismatase hydrolase family protein [Musa acuminata] Back     alignment and taxonomy information
>gi|225465680|ref|XP_002272282.1| PREDICTED: isochorismatase-like isoform 1 [Vitis vinifera] gi|359484032|ref|XP_003633056.1| PREDICTED: isochorismatase-like isoform 2 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query201
TAIR|locus:2166958198 NIC2 "nicotinamidase 2" [Arabi 0.955 0.969 0.729 1.2e-74
TAIR|locus:2166948198 NIC3 "nicotinamidase 3" [Arabi 0.965 0.979 0.706 2.8e-73
TIGR_CMR|BA_2371295 BA_2371 "isochorismatase" [Bac 0.781 0.532 0.323 6e-16
UNIPROTKB|P0ADI4285 entB [Escherichia coli K-12 (t 0.885 0.624 0.297 4.2e-15
TIGR_CMR|GSU_0569182 GSU_0569 "isochorismatase fami 0.651 0.719 0.342 3e-14
TIGR_CMR|CHY_0679191 CHY_0679 "isochorismatase fami 0.800 0.842 0.284 1.2e-12
TIGR_CMR|BA_3315193 BA_3315 "isochorismatase famil 0.547 0.569 0.365 3.1e-12
TIGR_CMR|BA_2963176 BA_2963 "isochorismatase famil 0.681 0.778 0.312 1.2e-10
TIGR_CMR|VC_0771293 VC_0771 "vibriobactin-specific 0.761 0.522 0.305 1.5e-10
TAIR|locus:2094927196 AT3G16190 [Arabidopsis thalian 0.781 0.801 0.301 2e-10
TAIR|locus:2166958 NIC2 "nicotinamidase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 753 (270.1 bits), Expect = 1.2e-74, P = 1.2e-74
 Identities = 140/192 (72%), Positives = 160/192 (83%)

Query:     7 SSYEKYEIRKRNPNPKSSVLLVIDMQNHFSSIAKPILDNTLATVQLCRRASIPVFFTRHC 66
             SS   YE RKR PNPK + LLVIDMQNHF S+A+PIL N L T+ +CRRASIPVFFTRH 
Sbjct:     4 SSSRTYETRKREPNPKIAALLVIDMQNHFYSMAEPILQNALTTIDICRRASIPVFFTRHN 63

Query:    67 HKSPADYGMLGEWWNGDLVYDGTADAELLPEIKGLVAGADEVIEKNTYSAFGNTRLQERL 126
             HKSP D+GMLGEWWNGDL+ DGT D+E++PEI   V G DE++EK+TYSAF NT LQE+L
Sbjct:    64 HKSPTDHGMLGEWWNGDLILDGTTDSEIIPEINRQVTGPDEIVEKSTYSAFNNTHLQEKL 123

Query:   127 VGMGVEEVIVCGVMTNLCCETTARDAFVRGFRVFFSTDATATSDLELHEATLKNLAYGFA 186
               +GV+EVIV GVMTNLCCETTAR+AFV+GFRVFFSTDATAT + ELHEATL NLAYGFA
Sbjct:   124 DKIGVKEVIVIGVMTNLCCETTAREAFVKGFRVFFSTDATATVNEELHEATLMNLAYGFA 183

Query:   187 YLFDCERLEAGL 198
             YL DC+RL  GL
Sbjct:   184 YLVDCDRLRRGL 195
GO:0003824 "catalytic activity" evidence=IEA;ISS
GO:0005575 "cellular_component" evidence=ND
GO:0008152 "metabolic process" evidence=IEA;ISS
GO:0008936 "nicotinamidase activity" evidence=IDA
GO:0019674 "NAD metabolic process" evidence=IMP
TAIR|locus:2166948 NIC3 "nicotinamidase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|BA_2371 BA_2371 "isochorismatase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
UNIPROTKB|P0ADI4 entB [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_0569 GSU_0569 "isochorismatase family protein" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_0679 CHY_0679 "isochorismatase family protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|BA_3315 BA_3315 "isochorismatase family protein" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|BA_2963 BA_2963 "isochorismatase family protein" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|VC_0771 VC_0771 "vibriobactin-specific isochorismatase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
TAIR|locus:2094927 AT3G16190 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.5.1.19LOW CONFIDENCE prediction!
3rd Layer3.5.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query201
PLN02621197 PLN02621, PLN02621, nicotinamidase 1e-135
cd00431161 cd00431, cysteine_hydrolases, Cysteine hydrolases; 6e-52
pfam00857173 pfam00857, Isochorismatase, Isochorismatase family 9e-45
COG1335205 COG1335, PncA, Amidases related to nicotinamidase 9e-37
COG1535218 COG1535, EntB, Isochorismate hydrolase [Secondary 4e-36
cd01014155 cd01014, nicotinamidase_related, Nicotinamidase_ r 2e-34
cd01013203 cd01013, isochorismatase, Isochorismatase, also kn 5e-25
cd01012157 cd01012, YcaC_related, YcaC related amidohydrolase 3e-18
cd01015179 cd01015, CSHase, N-carbamoylsarcosine amidohydrola 5e-18
TIGR03614226 TIGR03614, RutB, pyrimidine utilization protein B 1e-17
cd01011196 cd01011, nicotinamidase, Nicotinamidase/pyrazinami 2e-15
PTZ00331212 PTZ00331, PTZ00331, alpha/beta hydrolase; Provisio 2e-13
PRK11440188 PRK11440, PRK11440, putative hydrolase; Provisiona 1e-11
PRK11609212 PRK11609, PRK11609, nicotinamidase/pyrazinamidase; 3e-08
>gnl|CDD|178229 PLN02621, PLN02621, nicotinamidase Back     alignment and domain information 
 Score =  375 bits (965), Expect = e-135
 Identities = 148/195 (75%), Positives = 170/195 (87%), Gaps = 1/195 (0%)

Query: 6   CSSYEKYEIRKRNPNPKSSVLLVIDMQNHFSSIAKPILDNTLATVQLCRRASIPVFFTRH 65
            SSY+KYE RKR+P+PK + LLVIDMQN+FSS+A+PIL   L T+ LCRRASIPVFFTRH
Sbjct: 3   ASSYKKYETRKRDPDPKQAALLVIDMQNYFSSMAEPILPALLTTIDLCRRASIPVFFTRH 62

Query: 66  CHKSPADYGMLGEWWNGDLVYDGTADAELLPEIKGLVAGADEVIEKNTYSAFGNTRLQER 125
            HKSP+DYGMLGEWW+GDL+ DGT +AEL+PEI   V G DEV+EK+TYSAF NTRL+ER
Sbjct: 63  SHKSPSDYGMLGEWWDGDLILDGTTEAELMPEIGR-VTGPDEVVEKSTYSAFYNTRLEER 121

Query: 126 LVGMGVEEVIVCGVMTNLCCETTARDAFVRGFRVFFSTDATATSDLELHEATLKNLAYGF 185
           L  +GV+EVIV GVMTNLCCETTAR+AFVRGFRVFFSTDATAT++ ELHEATLKNLAYGF
Sbjct: 122 LRKIGVKEVIVTGVMTNLCCETTAREAFVRGFRVFFSTDATATANEELHEATLKNLAYGF 181

Query: 186 AYLFDCERLEAGLFG 200
           AYL DC+RLEAGL  
Sbjct: 182 AYLVDCDRLEAGLLK 196

Length = 197
>gnl|CDD|238245 cd00431, cysteine_hydrolases, Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle Back     alignment and domain information
>gnl|CDD|216156 pfam00857, Isochorismatase, Isochorismatase family Back     alignment and domain information
>gnl|CDD|224254 COG1335, PncA, Amidases related to nicotinamidase [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>gnl|CDD|224452 COG1535, EntB, Isochorismate hydrolase [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>gnl|CDD|238496 cd01014, nicotinamidase_related, Nicotinamidase_ related amidohydrolases Back     alignment and domain information
>gnl|CDD|238495 cd01013, isochorismatase, Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase, catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of a vinyl ether, an uncommon reaction in biological systems Back     alignment and domain information
>gnl|CDD|238494 cd01012, YcaC_related, YcaC related amidohydrolases; E Back     alignment and domain information
>gnl|CDD|238497 cd01015, CSHase, N-carbamoylsarcosine amidohydrolase (CSHase) hydrolyzes N-carbamoylsarcosine to sarcosine, carbon dioxide and ammonia Back     alignment and domain information
>gnl|CDD|163356 TIGR03614, RutB, pyrimidine utilization protein B Back     alignment and domain information
>gnl|CDD|238493 cd01011, nicotinamidase, Nicotinamidase/pyrazinamidase (PZase) Back     alignment and domain information
>gnl|CDD|240363 PTZ00331, PTZ00331, alpha/beta hydrolase; Provisional Back     alignment and domain information
>gnl|CDD|183137 PRK11440, PRK11440, putative hydrolase; Provisional Back     alignment and domain information
>gnl|CDD|183228 PRK11609, PRK11609, nicotinamidase/pyrazinamidase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 201
PLN02621197 nicotinamidase 100.0
PRK11440188 putative hydrolase; Provisional 100.0
cd01013203 isochorismatase Isochorismatase, also known as 2,3 100.0
PRK11609212 nicotinamidase/pyrazinamidase; Provisional 100.0
TIGR03614226 RutB pyrimidine utilization protein B. RL Proc Nat 100.0
PF00857174 Isochorismatase: Isochorismatase family; InterPro: 100.0
cd01015179 CSHase N-carbamoylsarcosine amidohydrolase (CSHase 100.0
cd01012157 YcaC_related YcaC related amidohydrolases; E.coli 100.0
cd01011196 nicotinamidase Nicotinamidase/pyrazinamidase (PZas 100.0
PTZ00331212 alpha/beta hydrolase; Provisional 100.0
COG1335205 PncA Amidases related to nicotinamidase [Secondary 100.0
cd00431161 cysteine_hydrolases Cysteine hydrolases; This fami 100.0
PLN02743239 nicotinamidase 100.0
cd01014155 nicotinamidase_related Nicotinamidase_ related ami 100.0
COG1535218 EntB Isochorismate hydrolase [Secondary metabolite 100.0
KOG4003223 consensus Pyrazinamidase/nicotinamidase PNC1 [Defe 99.95
KOG4044201 consensus Mitochondrial associated endoribonucleas 99.93
PF02739169 5_3_exonuc_N: 5'-3' exonuclease, N-terminal resolv 84.44
>PLN02621 nicotinamidase Back     alignment and domain information 
Probab=100.00  E-value=1.5e-47  Score=299.38  Aligned_cols=196  Identities=74%  Similarity=1.208  Sum_probs=179.6

Q ss_pred             CCCcccchhhhhhhhccCCCCCCeEEEEEeccCccCCCchhHHHHHHHHHHHHHHCCCcEEEEecccCCCCCcccccccc
Q 028963            1 MATSKCSSYEKYEIRKRNPNPKSSVLLVIDMQNHFSSIAKPILDNTLATVQLCRRASIPVFFTRHCHKSPADYGMLGEWW   80 (201)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~aLlviD~Q~~f~~~~~~~i~~i~~l~~~ar~~g~~vi~~~~~~~~~~~~~~~~~~~   80 (201)
                      ||+||-..|   ...+..++++++|||+|||||+|.+....+++++++|++.||..|+||||+++.+.++.+++.+..||
T Consensus         1 ~~~~~~~~~---~~~~~~~~~~~~aLlvID~Q~~f~~~~~~~v~~i~~Ll~~ar~~~~pVi~t~~~~~~~~~~~~~~~~~   77 (197)
T PLN02621          1 MAASSYKKY---ETRKRDPDPKQAALLVIDMQNYFSSMAEPILPALLTTIDLCRRASIPVFFTRHSHKSPSDYGMLGEWW   77 (197)
T ss_pred             CCcchhhhh---ccccCCCCCCCEEEEEEeChhhhhhhHHHHHHHHHHHHHHHHHCCCcEEEEeccCCCcchhhhhhhhc
Confidence            666655555   57777889999999999999999877778999999999999999999999999997666566678889


Q ss_pred             CCCccccCCCCccccccccCCCCCCCEEEECCCCCCCCCCchHHHHHhCCCcEEEEeeccCchhHHHHHHHHHhCCCeEE
Q 028963           81 NGDLVYDGTADAELLPEIKGLVAGADEVIEKNTYSAFGNTRLQERLVGMGVEEVIVCGVMTNLCCETTARDAFVRGFRVF  160 (201)
Q Consensus        81 ~~~~~~~g~~g~~~~~~l~~~~~~~~~vv~K~~~saf~~t~L~~~L~~~gi~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~  160 (201)
                      +.+.|..|++|++++++|++. .+++.+|.|++||+|.+|+|.++|+++|+++|||+|++|++||++|+++|+++||+|+
T Consensus        78 ~~~~~~~gs~g~~i~~~L~~~-~~~~~vi~K~~~saf~~t~L~~~L~~~gi~~lvi~Gv~T~~CV~~Ta~~a~~~gy~v~  156 (197)
T PLN02621         78 DGDLILDGTTEAELMPEIGRV-TGPDEVVEKSTYSAFYNTRLEERLRKIGVKEVIVTGVMTNLCCETTAREAFVRGFRVF  156 (197)
T ss_pred             CCccccCCCCccccchhccCC-CCCCEEEECCCcCCCCCCcHHHHHHHCCCCEEEEEecccchhHHHHHHHHHHCCCEEE
Confidence            988899999999999999883 4678999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCCCHHHHHHHHHHHhhcceEEeeHHHHHHhhcC
Q 028963          161 FSTDATATSDLELHEATLKNLAYGFAYLFDCERLEAGLFG  200 (201)
Q Consensus       161 vv~Da~~~~~~~~h~~al~~l~~~~~~v~~~~e~~~~l~~  200 (201)
                      |++|||++.+++.|+.+|..|...|++|+++++++.+|-+
T Consensus       157 v~~Da~as~~~~~h~~al~~~~~~~~~v~~~~~~~~~~~~  196 (197)
T PLN02621        157 FSTDATATANEELHEATLKNLAYGFAYLVDCDRLEAGLLK  196 (197)
T ss_pred             EeccccCCCCHHHHHHHHHHHHhhceEeecHHHHHHHHhc
Confidence            9999999999999999999999999999999999988754

>PRK11440 putative hydrolase; Provisional Back     alignment and domain information
>cd01013 isochorismatase Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase, catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of a vinyl ether, an uncommon reaction in biological systems Back     alignment and domain information
>PRK11609 nicotinamidase/pyrazinamidase; Provisional Back     alignment and domain information
>TIGR03614 RutB pyrimidine utilization protein B Back     alignment and domain information
>PF00857 Isochorismatase: Isochorismatase family; InterPro: IPR000868 This is a family of hydrolase enzymes Back     alignment and domain information
>cd01015 CSHase N-carbamoylsarcosine amidohydrolase (CSHase) hydrolyzes N-carbamoylsarcosine to sarcosine, carbon dioxide and ammonia Back     alignment and domain information
>cd01012 YcaC_related YcaC related amidohydrolases; E Back     alignment and domain information
>cd01011 nicotinamidase Nicotinamidase/pyrazinamidase (PZase) Back     alignment and domain information
>PTZ00331 alpha/beta hydrolase; Provisional Back     alignment and domain information
>COG1335 PncA Amidases related to nicotinamidase [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>cd00431 cysteine_hydrolases Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle Back     alignment and domain information
>PLN02743 nicotinamidase Back     alignment and domain information
>cd01014 nicotinamidase_related Nicotinamidase_ related amidohydrolases Back     alignment and domain information
>COG1535 EntB Isochorismate hydrolase [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>KOG4003 consensus Pyrazinamidase/nicotinamidase PNC1 [Defense mechanisms] Back     alignment and domain information
>KOG4044 consensus Mitochondrial associated endoribonuclease MAR1 (isochorismatase superfamily) [General function prediction only] Back     alignment and domain information
>PF02739 5_3_exonuc_N: 5'-3' exonuclease, N-terminal resolvase-like domain; InterPro: IPR020046 The N-terminal and internal 5'3'-exonuclease domains are commonly found together, and are most often associated with 5' to 3' nuclease activities Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query201
2fq1_A287 Crystal Structure Of The Two-Domain Non-Ribosomal P 1e-15
3irv_A233 Crystal Structure Of Cysteine Hydrolase Pspph_2384 3e-14
3kl2_A226 Crystal Structure Of A Putative Isochorismatase Fro 1e-12
3tb4_A223 Crystal Structure Of The Isc Domain Of Vibb Length 4e-12
3tg2_A223 Crystal Structure Of The Isc Domain Of Vibb In Comp 1e-11
3eef_A182 Crystal Structure Of N-Carbamoylsarcosine Amidase F 6e-10
3hb7_A204 The Crystal Structure Of An Isochorismatase-Like Hy 1e-09
1j2r_A199 Crystal Structure Of Escherichia Coli Gene Product 2e-09
1im5_A180 Crystal Structure Of Pyrazinamidase Of Pyrococcus H 5e-09
4h17_A197 Crystal Structure Of An Isochorismatase (Pp1826) Fr 3e-08
1nf9_A207 Crystal Structure Of Phzd Protein From Pseudomonas 5e-08
3r77_A209 Crystal Structure Of The D38a Mutant Of Isochorisma 1e-07
2wt9_A235 Acinetobacter Baumanii Nicotinamidase Pyrazinamidea 2e-07
1nf8_A207 Crystal Structure Of Phzd Protein Active Site Mutan 4e-07
1nba_A264 Crystal Structure Analysis, Refinement And Enzymati 4e-07
1yac_A208 The 1.8 Angstrom Crystal Structure Of The Ycac Gene 2e-06
3txy_A199 Structure Of An Isochorismatase Family Protein (Bth 2e-06
3s2s_A217 The Crystal Structure Of PyrazinamidaseNICOTINAMIDA 4e-06
2wta_A213 Acinetobacter Baumanii Nicotinamidase Pyrazinamidea 1e-05
3o90_A211 High Resolution Crystal Structures Of Streptococcus 1e-04
3ot4_A236 Structure And Catalytic Mechanism Of Bordetella Bro 2e-04
2a67_A167 Crystal Structure Of Isochorismatase Family Protein 4e-04
>pdb|2FQ1|A Chain A, Crystal Structure Of The Two-Domain Non-Ribosomal Peptide Synthetase Entb Containing Isochorismate Lyase And Aryl-Carrier Protein Domains Length = 287 Back     alignment and structure 
Iteration: 1

 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/198 (29%), Positives = 98/198 (49%), Gaps = 20/198 (10%)
Query: 1   MATSKCSSY---EKYEIRKRNPN----PKSSVLLVIDMQNHFSSIAK---PILDNTLATV 50
           MA  K  +Y   E ++I +   +    P+ + LL+ DMQ++F S      P+++  +A +
Sbjct: 3   MAIPKLQAYALPESHDIPQNKVDWAFEPQRAALLIHDMQDYFVSFWGENCPMMEQVIANI 62
Query: 51  ----QLCRRASIPVFFTRHC-HKSPADYGMLGEWWNGDLVYDGTADAELLPEIKGLVAGA 105
                 C++ +IPV++T     +S  D  +L + W   L    T   E    +  L   A
Sbjct: 63  AALRDYCKQHNIPVYYTAQPKEQSDEDRALLNDMWGPGL----TRSPEQQKVVDRLTPDA 118
Query: 106 DE-VIEKNTYSAFGNTRLQERLVGMGVEEVIVCGVMTNLCCETTARDAFVRGFRVFFSTD 164
           D+ V+ K  YSAF  + L++ L   G  ++I+ GV  ++ C TTA DAF+R  + F   D
Sbjct: 119 DDTVLVKWRYSAFHRSPLEQMLKESGRNQLIITGVYAHIGCMTTATDAFMRDIKPFMVAD 178
Query: 165 ATATSDLELHEATLKNLA 182
           A A    + H  +LK +A
Sbjct: 179 ALADFSRDEHLMSLKYVA 196
>pdb|3IRV|A Chain A, Crystal Structure Of Cysteine Hydrolase Pspph_2384 From Pseudomonas Syringae Pv. Phaseolicola 1448a Length = 233 Back     alignment and structure
>pdb|3KL2|A Chain A, Crystal Structure Of A Putative Isochorismatase From Streptomyces Avermitilis Length = 226 Back     alignment and structure
>pdb|3TB4|A Chain A, Crystal Structure Of The Isc Domain Of Vibb Length = 223 Back     alignment and structure
>pdb|3TG2|A Chain A, Crystal Structure Of The Isc Domain Of Vibb In Complex With Isochorismate Length = 223 Back     alignment and structure
>pdb|3EEF|A Chain A, Crystal Structure Of N-Carbamoylsarcosine Amidase From Thermoplasma Acidophilum Length = 182 Back     alignment and structure
>pdb|3HB7|A Chain A, The Crystal Structure Of An Isochorismatase-Like Hydrolase From Alkaliphilus Metalliredigens To 2.3a Length = 204 Back     alignment and structure
>pdb|1J2R|A Chain A, Crystal Structure Of Escherichia Coli Gene Product Yecd At 1.3 A Resolution Length = 199 Back     alignment and structure
>pdb|1IM5|A Chain A, Crystal Structure Of Pyrazinamidase Of Pyrococcus Horikoshii In Complex With Zinc Length = 180 Back     alignment and structure
>pdb|4H17|A Chain A, Crystal Structure Of An Isochorismatase (Pp1826) From Pseudomonas Putida Kt2440 At 1.60 A Resolution Length = 197 Back     alignment and structure
>pdb|1NF9|A Chain A, Crystal Structure Of Phzd Protein From Pseudomonas Aeruginosa Length = 207 Back     alignment and structure
>pdb|3R77|A Chain A, Crystal Structure Of The D38a Mutant Of Isochorismatase Phzd From Pseudomonas Fluorescens 2-79 In Complex With 2-Amino-2- Desoxyisochorismate Adic Length = 209 Back     alignment and structure
>pdb|2WT9|A Chain A, Acinetobacter Baumanii Nicotinamidase Pyrazinamidease Length = 235 Back     alignment and structure
>pdb|1NF8|A Chain A, Crystal Structure Of Phzd Protein Active Site Mutant With Substrate Length = 207 Back     alignment and structure
>pdb|1NBA|A Chain A, Crystal Structure Analysis, Refinement And Enzymatic Reaction Mechanism Of N-Carbamoylsarcosine Amidohydrolase From Arthrobacter Sp. At 2.0 Angstroms Resolution Length = 264 Back     alignment and structure
>pdb|1YAC|A Chain A, The 1.8 Angstrom Crystal Structure Of The Ycac Gene Product From Escherichia Coli Reveals An Octameric Hydrolase Of Unknown Specificity Length = 208 Back     alignment and structure
>pdb|3TXY|A Chain A, Structure Of An Isochorismatase Family Protein (Bth_ii2229) From Burkholderia Thailandensis Length = 199 Back     alignment and structure
>pdb|3S2S|A Chain A, The Crystal Structure Of PyrazinamidaseNICOTINAMIDASE FROM Streptococcus Mutans Ua159 Length = 217 Back     alignment and structure
>pdb|3O90|A Chain A, High Resolution Crystal Structures Of Streptococcus Pneumoniae Nicotinamidase With Trapped Intermediates Provide Insights Into Catalytic Mechanism And Inhibition By Aldehydes Length = 211 Back     alignment and structure
>pdb|3OT4|A Chain A, Structure And Catalytic Mechanism Of Bordetella Bronchiseptica Nicf Length = 236 Back     alignment and structure
>pdb|2A67|A Chain A, Crystal Structure Of Isochorismatase Family Protein Length = 167 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query201
1nba_A264 N-carbamoylsarcosine amidohydrolase; hydrolase(IN 1e-62
1nf9_A207 Phenazine biosynthesis protein PHZD; isochorismata 3e-62
2fq1_A287 Isochorismatase; ENTB, NRPS, multi-domain, ACP, hy 1e-61
3irv_A233 Cysteine hydrolase; structural genomics, PSI-2, pr 4e-59
3ot4_A236 Putative isochorismatase; NICF, maleamate hydrolas 1e-58
3kl2_A226 Putative isochorismatase; structural genomics, unk 9e-57
1j2r_A199 Hypothetical isochorismatase family protein YECD; 7e-56
3txy_A199 Isochorismatase family protein family; structural 2e-54
3hu5_A204 Isochorismatase family protein; structural genomic 6e-52
3eef_A182 N-carbamoylsarcosine amidase related protein; stru 1e-50
3hb7_A204 Isochorismatase hydrolase; PS structural genomics, 2e-49
3lqy_A190 Putative isochorismatase hydrolase; structural gen 2e-49
3oqp_A211 Putative isochorismatase; catalytic triad, structu 3e-49
3mcw_A198 Putative hydrolase; isochorismatase family, struct 5e-48
2a67_A167 Isochorismatase family protein; structural genomic 3e-44
3o94_A211 Nicotinamidase; hydrolase; 1.60A {Streptococcus pn 4e-42
1yac_A208 Ycacgp, YCAC gene product; unknown bacterial hydro 2e-39
1im5_A180 180AA long hypothetical pyrazinamidase/nicotinamid 2e-35
3gbc_A186 Pyrazinamidase/nicotinamidas PNCA; nicotinamidase 7e-33
2wt9_A235 Nicotinamidase; hydrolase, pyrazinamidase; HET: GO 1e-29
3r2j_A227 Alpha/beta-hydrolase-like protein; nicotinamidase, 2e-27
2b34_A199 F35G2.2, MAR1 ribonuclease; isochorismatase family 2e-23
3v8e_A216 Nicotinamidase; hydrolase; HET: JJJ; 2.71A {Saccha 4e-22
1yzv_A204 Hypothetical protein; structural genomics, PSI, pr 5e-22
1x9g_A200 Putative MAR1; structural genomics, protein struct 7e-21
>1nba_A N-carbamoylsarcosine amidohydrolase; hydrolase(IN linear amides); 2.00A {Arthrobacter SP} SCOP: c.33.1.3 Length = 264 Back     alignment and structure
 Score =  194 bits (494), Expect = 1e-62
 Identities = 42/206 (20%), Positives = 77/206 (37%), Gaps = 16/206 (7%)

Query: 7   SSYEKYEIRKRNPNPKSSVLLVIDMQNHF--------SSIAKPILDNTLATVQLCRRASI 58
           S Y +   ++R        ++ ID+ N +            + I+ N     +  R   +
Sbjct: 28  SIYNERGFKRRIGYGNRPAVIHIDLANAWTQPGHPFSCPGMETIIPNVQRINEAARAKGV 87

Query: 59  PVFFTRHCHK------SPADYGMLGEWWNGDLVYDGTADAELLPEIKGLVAGADEVIEKN 112
           PVF+T + ++         D G+       + +   +  A++   I    A  + VIEKN
Sbjct: 88  PVFYTTNVYRNRDASSGTNDMGLWYSKIPTETLPADSYWAQIDDRIA--PADGEVVIEKN 145

Query: 113 TYSAFGNTRLQERLVGMGVEEVIVCGVMTNLCCETTARDAFVRGFRVFFSTDATATSDLE 172
             SAF  T L+  L    ++ +IV G     C   T  DA  +GFR     +        
Sbjct: 146 RASAFPGTNLELFLTSNRIDTLIVTGATAAGCVRHTVEDAIAKGFRPIIPRETIGDRVPG 205

Query: 173 LHEATLKNLAYGFAYLFDCERLEAGL 198
           + +  L ++   F  +   + +   L
Sbjct: 206 VVQWNLYDIDNKFGDVESTDSVVQYL 231
>1nf9_A Phenazine biosynthesis protein PHZD; isochorismatase, enzyme, phenazine pathway, hydrolase; HET: BOG; 1.50A {Pseudomonas aeruginosa} SCOP: c.33.1.3 PDB: 1nf8_A* 3r77_A* Length = 207 Back     alignment and structure
>2fq1_A Isochorismatase; ENTB, NRPS, multi-domain, ACP, hydrolase; 2.30A {Escherichia coli} Length = 287 Back     alignment and structure
>3irv_A Cysteine hydrolase; structural genomics, PSI-2, protein structure initiative, CY hydrolase; 1.60A {Pseudomonas syringae PV} Length = 233 Back     alignment and structure
>3ot4_A Putative isochorismatase; NICF, maleamate hydrolase, hydrol; 2.40A {Bordetella bronchiseptica} PDB: 3uao_A Length = 236 Back     alignment and structure
>3kl2_A Putative isochorismatase; structural genomics, unknown function, PSI-2, protein struct initiative; 2.30A {Streptomyces avermitilis} Length = 226 Back     alignment and structure
>1j2r_A Hypothetical isochorismatase family protein YECD; parallel beta-sheet 3-2-1-4-5-6, alpha-beta-alpha motif, TET structural genomics; 1.30A {Escherichia coli} SCOP: c.33.1.3 Length = 199 Back     alignment and structure
>3txy_A Isochorismatase family protein family; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.70A {Burkholderia thailandensis} Length = 199 Back     alignment and structure
>3hu5_A Isochorismatase family protein; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; 1.50A {Desulfovibrio vulgaris} Length = 204 Back     alignment and structure
>3eef_A N-carbamoylsarcosine amidase related protein; structural genomics, protein structure initiative, midwest center for structural genomics; 2.35A {Thermoplasma acidophilum} Length = 182 Back     alignment and structure
>3hb7_A Isochorismatase hydrolase; PS structural genomics, midwest center for structural genomics structure initiative; 2.30A {Alkaliphilus metalliredigens} Length = 204 Back     alignment and structure
>3oqp_A Putative isochorismatase; catalytic triad, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; 1.22A {Burkholderia xenovorans} Length = 211 Back     alignment and structure
>3mcw_A Putative hydrolase; isochorismatase family, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.06A {Chromobacterium violaceum} Length = 198 Back     alignment and structure
>2a67_A Isochorismatase family protein; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 2.00A {Enterococcus faecalis} Length = 167 Back     alignment and structure
>3o94_A Nicotinamidase; hydrolase; 1.60A {Streptococcus pneumoniae} PDB: 3o90_A 3o91_A* 3o92_A* 3o93_A* Length = 211 Back     alignment and structure
>1yac_A Ycacgp, YCAC gene product; unknown bacterial hydrolase, three layer alpha-beta-alpha SA topology, ENTB homolog, cshase homolog; 1.80A {Escherichia coli} SCOP: c.33.1.3 Length = 208 Back     alignment and structure
>1im5_A 180AA long hypothetical pyrazinamidase/nicotinamidase; pyrazinamide, tuberculosis, PZA resistance, drug resistance, metal ION catalysis; 1.65A {Pyrococcus horikoshii} SCOP: c.33.1.3 PDB: 1ilw_A Length = 180 Back     alignment and structure
>2wt9_A Nicotinamidase; hydrolase, pyrazinamidase; HET: GOL; 1.65A {Acinetobacter baumannii} PDB: 2wta_A* Length = 235 Back     alignment and structure
>3r2j_A Alpha/beta-hydrolase-like protein; nicotinamidase, cytoplasmic; 2.68A {Leishmania infantum} Length = 227 Back     alignment and structure
>2b34_A F35G2.2, MAR1 ribonuclease; isochorismatase family, structural genomics, PSI, protein structure initiative; 2.14A {Caenorhabditis elegans} Length = 199 Back     alignment and structure
>3v8e_A Nicotinamidase; hydrolase; HET: JJJ; 2.71A {Saccharomyces cerevisiae} PDB: 2h0r_A Length = 216 Back     alignment and structure
>1yzv_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.00A {Trypanosoma cruzi} Length = 204 Back     alignment and structure
>1x9g_A Putative MAR1; structural genomics, protein structure initiative, SGPP, PSI structural genomics of pathogenic protozoa consortium; 2.41A {Leishmania donovani} SCOP: c.33.1.3 PDB: 1xn4_A Length = 200 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query201
3hb7_A204 Isochorismatase hydrolase; PS structural genomics, 100.0
3tg2_A223 Vibriobactin-specific isochorismatase; hydrolase; 100.0
3ot4_A236 Putative isochorismatase; NICF, maleamate hydrolas 100.0
3hu5_A204 Isochorismatase family protein; structural genomic 100.0
3irv_A233 Cysteine hydrolase; structural genomics, PSI-2, pr 100.0
1nba_A264 N-carbamoylsarcosine amidohydrolase; hydrolase(IN 100.0
3lqy_A190 Putative isochorismatase hydrolase; structural gen 100.0
3mcw_A198 Putative hydrolase; isochorismatase family, struct 100.0
3eef_A182 N-carbamoylsarcosine amidase related protein; stru 100.0
1nf9_A207 Phenazine biosynthesis protein PHZD; isochorismata 100.0
1j2r_A199 Hypothetical isochorismatase family protein YECD; 100.0
3o94_A211 Nicotinamidase; hydrolase; 1.60A {Streptococcus pn 100.0
3oqp_A211 Putative isochorismatase; catalytic triad, structu 100.0
4h17_A197 Hydrolase, isochorismatase family; rossmann-like f 100.0
3kl2_A226 Putative isochorismatase; structural genomics, unk 100.0
3txy_A199 Isochorismatase family protein family; structural 100.0
3gbc_A186 Pyrazinamidase/nicotinamidas PNCA; nicotinamidase 100.0
3r2j_A227 Alpha/beta-hydrolase-like protein; nicotinamidase, 100.0
1im5_A180 180AA long hypothetical pyrazinamidase/nicotinamid 100.0
2fq1_A287 Isochorismatase; ENTB, NRPS, multi-domain, ACP, hy 100.0
2wt9_A235 Nicotinamidase; hydrolase, pyrazinamidase; HET: GO 100.0
2a67_A167 Isochorismatase family protein; structural genomic 100.0
3v8e_A216 Nicotinamidase; hydrolase; HET: JJJ; 2.71A {Saccha 100.0
1yac_A208 Ycacgp, YCAC gene product; unknown bacterial hydro 100.0
2b34_A199 F35G2.2, MAR1 ribonuclease; isochorismatase family 100.0
1yzv_A204 Hypothetical protein; structural genomics, PSI, pr 100.0
1x9g_A200 Putative MAR1; structural genomics, protein struct 100.0
>3hb7_A Isochorismatase hydrolase; PS structural genomics, midwest center for structural genomics structure initiative; 2.30A {Alkaliphilus metalliredigens} Back     alignment and structure
Probab=100.00  E-value=1e-46  Score=295.05  Aligned_cols=175  Identities=24%  Similarity=0.362  Sum_probs=162.4

Q ss_pred             CCCCCeEEEEEeccCccCCC--------chhHHHHHHHHHHHHH---HCCCcEEEEecccCCCCCccccccccCCCcccc
Q 028963           19 PNPKSSVLLVIDMQNHFSSI--------AKPILDNTLATVQLCR---RASIPVFFTRHCHKSPADYGMLGEWWNGDLVYD   87 (201)
Q Consensus        19 ~~~~~~aLlviD~Q~~f~~~--------~~~~i~~i~~l~~~ar---~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (201)
                      ++.+++|||||||||+|+++        .+.+++++++|+++||   +.|+||||+++.|.+..   .....||.| |.+
T Consensus         3 ~~m~~tALlvID~Q~~f~~~~g~l~~~~~~~ii~~i~~Ll~~ar~~~~~g~pVi~t~~~~~~~~---~~~~~~~~~-~~~   78 (204)
T 3hb7_A            3 QGMAKHAILVIDMLNDFVGEKAPLRCPGGETIIPDLQKIFEWVRGREGDDIHLVHIQEAHRKND---ADFRVRPLH-AVK   78 (204)
T ss_dssp             SSSCCEEEEEECCBTTTSSTTCTTCCGGGGGGHHHHHHHHHHHHHSSSSSEEEEEEEECBCCCS---CCSSSSCSS-CBT
T ss_pred             CCCCCeEEEEEcCchhhcCCCCcccCccHHHHHHHHHHHHHHHHhhhhcCCEEEEEEccCCCCC---hhhhhcchh-ccC
Confidence            56789999999999999972        4578999999999999   99999999999987432   234568877 999


Q ss_pred             CCCCccccccccCCCCCCCEEEECCCCCCCCCCchHHHHHhCCCcEEEEeeccCchhHHHHHHHHHhCCCeEEEecCCCC
Q 028963           88 GTADAELLPEIKGLVAGADEVIEKNTYSAFGNTRLQERLVGMGVEEVIVCGVMTNLCCETTARDAFVRGFRVFFSTDATA  167 (201)
Q Consensus        88 g~~g~~~~~~l~~~~~~~~~vv~K~~~saf~~t~L~~~L~~~gi~~lvi~G~~T~~CV~~Ta~~a~~~G~~v~vv~Da~~  167 (201)
                      |++|++++|+|.|  .+++.+|.|++||+|++|+|.++|+++|+++|+|+|+.|++||++||++|+++||+|+|++|||+
T Consensus        79 gt~g~~i~~~l~~--~~~~~vi~K~~~saF~~t~L~~~L~~~gi~~lvi~G~~T~~CV~~Ta~dA~~~Gy~V~vv~Da~a  156 (204)
T 3hb7_A           79 GTWGSDFIPELYP--QEDEYIVQKRRHSGFAHTDLDLYLKEEGIDTVVLTGVWTNVCVRSTATDALANAYKVITLSDGTA  156 (204)
T ss_dssp             TSTTTSBCGGGCC--CTTCEEEEESSSSTTTTSSHHHHHHHTTCCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             CCchhhcCHhhCC--CCCCEEEeCCccCCccCccHHHHHHHCCCCEEEEEeecccHHHHHHHHHHHHCCCEEEEechhcc
Confidence            9999999999999  78999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHhhcceEEeeHHHHHHhhcC
Q 028963          168 TSDLELHEATLKNLAYGFAYLFDCERLEAGLFG  200 (201)
Q Consensus       168 ~~~~~~h~~al~~l~~~~~~v~~~~e~~~~l~~  200 (201)
                      +.+++.|+.+|..|. .|+.|+++++++.+|.+
T Consensus       157 s~~~~~h~~al~~l~-~~a~v~tt~~vl~~l~~  188 (204)
T 3hb7_A          157 SKTEEMHEYGLNDLS-IFTKVMTVDQYIQAWEN  188 (204)
T ss_dssp             CSSHHHHHHHHHHHH-HHSEEECHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHHH-hCCEEeeHHHHHHHHhc
Confidence            999999999999999 99999999999999965
>3tg2_A Vibriobactin-specific isochorismatase; hydrolase; HET: ISC PGE; 1.10A {Vibrio cholerae} PDB: 3tb4_A* Back     alignment and structure
>3ot4_A Putative isochorismatase; NICF, maleamate hydrolase, hydrol; 2.40A {Bordetella bronchiseptica} PDB: 3uao_A Back     alignment and structure
>3hu5_A Isochorismatase family protein; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; 1.50A {Desulfovibrio vulgaris} Back     alignment and structure
>3irv_A Cysteine hydrolase; structural genomics, PSI-2, protein structure initiative, CY hydrolase; 1.60A {Pseudomonas syringae PV} Back     alignment and structure
>1nba_A N-carbamoylsarcosine amidohydrolase; hydrolase(IN linear amides); 2.00A {Arthrobacter SP} SCOP: c.33.1.3 Back     alignment and structure
>3mcw_A Putative hydrolase; isochorismatase family, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.06A {Chromobacterium violaceum} Back     alignment and structure
>3eef_A N-carbamoylsarcosine amidase related protein; structural genomics, protein structure initiative, midwest center for structural genomics; 2.35A {Thermoplasma acidophilum} Back     alignment and structure
>1nf9_A Phenazine biosynthesis protein PHZD; isochorismatase, enzyme, phenazine pathway, hydrolase; HET: BOG; 1.50A {Pseudomonas aeruginosa} SCOP: c.33.1.3 PDB: 1nf8_A* 3r77_A* Back     alignment and structure
>1j2r_A Hypothetical isochorismatase family protein YECD; parallel beta-sheet 3-2-1-4-5-6, alpha-beta-alpha motif, TET structural genomics; 1.30A {Escherichia coli} SCOP: c.33.1.3 Back     alignment and structure
>3o94_A Nicotinamidase; hydrolase; 1.60A {Streptococcus pneumoniae} PDB: 3o90_A 3o91_A* 3o92_A* 3o93_A* 3s2s_A Back     alignment and structure
>3oqp_A Putative isochorismatase; catalytic triad, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; 1.22A {Burkholderia xenovorans} Back     alignment and structure
>4h17_A Hydrolase, isochorismatase family; rossmann-like fold, structural genomics, joint center for ST genomics, JCSG; 1.60A {Pseudomonas putida KT2440} Back     alignment and structure
>3kl2_A Putative isochorismatase; structural genomics, unknown function, PSI-2, protein struct initiative; 2.30A {Streptomyces avermitilis} SCOP: c.33.1.0 Back     alignment and structure
>3txy_A Isochorismatase family protein family; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.70A {Burkholderia thailandensis} SCOP: c.33.1.0 Back     alignment and structure
>3r2j_A Alpha/beta-hydrolase-like protein; nicotinamidase, cytoplasmic; 2.68A {Leishmania infantum} Back     alignment and structure
>1im5_A 180AA long hypothetical pyrazinamidase/nicotinamidase; pyrazinamide, tuberculosis, PZA resistance, drug resistance, metal ION catalysis; 1.65A {Pyrococcus horikoshii} SCOP: c.33.1.3 PDB: 1ilw_A Back     alignment and structure
>2fq1_A Isochorismatase; ENTB, NRPS, multi-domain, ACP, hydrolase; 2.30A {Escherichia coli} Back     alignment and structure
>2wt9_A Nicotinamidase; hydrolase, pyrazinamidase; HET: GOL; 1.65A {Acinetobacter baumannii} PDB: 2wta_A* Back     alignment and structure
>2a67_A Isochorismatase family protein; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 2.00A {Enterococcus faecalis} Back     alignment and structure
>3v8e_A Nicotinamidase; hydrolase; HET: JJJ; 2.71A {Saccharomyces cerevisiae} PDB: 2h0r_A Back     alignment and structure
>1yac_A Ycacgp, YCAC gene product; unknown bacterial hydrolase, three layer alpha-beta-alpha SA topology, ENTB homolog, cshase homolog; 1.80A {Escherichia coli} SCOP: c.33.1.3 Back     alignment and structure
>2b34_A F35G2.2, MAR1 ribonuclease; isochorismatase family, structural genomics, PSI, protein structure initiative; 2.14A {Caenorhabditis elegans} Back     alignment and structure
>1yzv_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.00A {Trypanosoma cruzi} Back     alignment and structure
>1x9g_A Putative MAR1; structural genomics, protein structure initiative, SGPP, PSI structural genomics of pathogenic protozoa consortium; 2.41A {Leishmania donovani} SCOP: c.33.1.3 PDB: 1xn4_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 201
d1nf9a_207 c.33.1.3 (A:) Phenazine biosynthesis protein PhzD 1e-35
d1j2ra_188 c.33.1.3 (A:) Hypothetical protein YecD {Escherich 5e-34
d1yaca_204 c.33.1.3 (A:) YcaC {Escherichia coli [TaxId: 562]} 6e-32
d1nbaa_253 c.33.1.3 (A:) N-carbamoylsarcosine amidohydrolase 3e-29
d1im5a_179 c.33.1.3 (A:) Pyrazinamidase/nicotinamidase {Archa 2e-28
d1x9ga_192 c.33.1.3 (A:) Ribonuclease MAR1 {Leishmania donova 2e-25
>d1nf9a_ c.33.1.3 (A:) Phenazine biosynthesis protein PhzD {Pseudomonas aeruginosa [TaxId: 287]} Length = 207 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Isochorismatase-like hydrolases
superfamily: Isochorismatase-like hydrolases
family: Isochorismatase-like hydrolases
domain: Phenazine biosynthesis protein PhzD
species: Pseudomonas aeruginosa [TaxId: 287]

 Score =  122 bits (306), Expect = 1e-35
 Identities = 43/180 (23%), Positives = 80/180 (44%), Gaps = 9/180 (5%)

Query: 19  PNPKSSVLLVIDMQNHF-----SSIAKPILDNTLATVQLCRRASIPVFFTRHCHK-SPAD 72
             P+ +VLLV DMQ +F      S+   ++ N     + C    + + +T      +   
Sbjct: 27  LEPRRAVLLVHDMQRYFLRPLPESLRAGLVANAARLRRWCVEQGVQIAYTAQPGSMTEEQ 86

Query: 73  YGMLGEWWNGDLVYDGTADAELLPEIKGLVAGADEVIEKNTYSAFGNTRLQERLVGMGVE 132
            G+L ++W G  +    AD E++ E+       D ++ K  YSAF ++ L +R+   G +
Sbjct: 87  RGLLKDFW-GPGMRASPADREVVEELA--PGPDDWLLTKWRYSAFFHSDLLQRMRAAGRD 143

Query: 133 EVIVCGVMTNLCCETTARDAFVRGFRVFFSTDATATSDLELHEATLKNLAYGFAYLFDCE 192
           ++++CGV  ++    +  DA+    + F   DA A      H   L+  A   A +   +
Sbjct: 144 QLVLCGVYAHVGVLISTVDAYSNDIQPFLVADAIADFSEAHHRMALEYAASRCAMVVTTD 203
>d1j2ra_ c.33.1.3 (A:) Hypothetical protein YecD {Escherichia coli [TaxId: 562]} Length = 188 Back     information, alignment and structure
>d1yaca_ c.33.1.3 (A:) YcaC {Escherichia coli [TaxId: 562]} Length = 204 Back     information, alignment and structure
>d1nbaa_ c.33.1.3 (A:) N-carbamoylsarcosine amidohydrolase {Arthrobacter sp. [TaxId: 1667]} Length = 253 Back     information, alignment and structure
>d1im5a_ c.33.1.3 (A:) Pyrazinamidase/nicotinamidase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 179 Back     information, alignment and structure
>d1x9ga_ c.33.1.3 (A:) Ribonuclease MAR1 {Leishmania donovani [TaxId: 5661]} Length = 192 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query201
d1nbaa_253 N-carbamoylsarcosine amidohydrolase {Arthrobacter 100.0
d1j2ra_188 Hypothetical protein YecD {Escherichia coli [TaxId 100.0
d1nf9a_207 Phenazine biosynthesis protein PhzD {Pseudomonas a 100.0
d1im5a_179 Pyrazinamidase/nicotinamidase {Archaeon Pyrococcus 100.0
d1yaca_204 YcaC {Escherichia coli [TaxId: 562]} 100.0
d1x9ga_192 Ribonuclease MAR1 {Leishmania donovani [TaxId: 566 100.0
d1a9xa3127 Carbamoyl phosphate synthetase (CPS), large subuni 81.2
d1onfa2117 Glutathione reductase {Plasmodium falciparum [TaxI 81.07
>d1nbaa_ c.33.1.3 (A:) N-carbamoylsarcosine amidohydrolase {Arthrobacter sp. [TaxId: 1667]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Isochorismatase-like hydrolases
superfamily: Isochorismatase-like hydrolases
family: Isochorismatase-like hydrolases
domain: N-carbamoylsarcosine amidohydrolase
species: Arthrobacter sp. [TaxId: 1667]

Probab=100.00  E-value=1.3e-47  Score=306.54  Aligned_cols=193  Identities=21%  Similarity=0.279  Sum_probs=173.3

Q ss_pred             ccchhhhhhhhccCCCCCCeEEEEEeccCccCCC--------chhHHHHHHHHHHHHHHCCCcEEEEecccCCCCC----
Q 028963            5 KCSSYEKYEIRKRNPNPKSSVLLVIDMQNHFSSI--------AKPILDNTLATVQLCRRASIPVFFTRHCHKSPAD----   72 (201)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~aLlviD~Q~~f~~~--------~~~~i~~i~~l~~~ar~~g~~vi~~~~~~~~~~~----   72 (201)
                      ..+.|+++|++.+....+++|||||||||+|+.+        .+.+++++++|+++||+.|+||||+++.+.+...    
T Consensus        20 ~~~~~~~~~~~~~~g~g~r~ALlvID~QndF~~p~~~~~~~~~~~iv~~i~~Li~aaR~~gipVI~~~~~~~~~~~~~~~   99 (253)
T d1nbaa_          20 GTSIYNERGFKRRIGYGNRPAVIHIDLANAWTQPGHPFSCPGMETIIPNVQRINEAARAKGVPVFYTTNVYRNRDASSGT   99 (253)
T ss_dssp             HHHHHHHHTCSCCCCCCSSEEEEEESCBHHHHSSSSTTCCSCHHHHHHHHHHHHHHHHHHTCCEEEEEECBSCCCTTSTT
T ss_pred             HHHHHHHcCccCCCCCCCcceEEEEcCcccccCCCCcccccCHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCCcccccc
Confidence            3578999999999999999999999999999853        3468999999999999999999999998764321    


Q ss_pred             --ccccccccCCCccccCCCCccccccccCCCCCCCEEEECCCCCCCCCCchHHHHHhCCCcEEEEeeccCchhHHHHHH
Q 028963           73 --YGMLGEWWNGDLVYDGTADAELLPEIKGLVAGADEVIEKNTYSAFGNTRLQERLVGMGVEEVIVCGVMTNLCCETTAR  150 (201)
Q Consensus        73 --~~~~~~~~~~~~~~~g~~g~~~~~~l~~~~~~~~~vv~K~~~saf~~t~L~~~L~~~gi~~lvi~G~~T~~CV~~Ta~  150 (201)
                        .+.....++.+.+..|++|++++|+|.|  .++|.+|.|++||+|++|+|..+|+++||++|||+|++||+||++|++
T Consensus       100 ~~~~~~~~~~~~~~~~~gt~ga~i~~~l~p--~~~d~vi~K~~~SaF~~T~L~~~Lr~~gI~~liv~Gv~Td~CV~~Ta~  177 (253)
T d1nbaa_         100 NDMGLWYSKIPTETLPADSYWAQIDDRIAP--ADGEVVIEKNRASAFPGTNLELFLTSNRIDTLIVTGATAAGCVRHTVE  177 (253)
T ss_dssp             CSCGGGGGTSCGGGCBTTSGGGSBCGGGCC--CTTCEEEEESSSSSSTTSSHHHHHHHTTCCEEEEEEECTTTHHHHHHH
T ss_pred             ccccccccccCccccCCCCcccccccccCC--CCCCeeeeccccccccCccHHHHHhhhccceEEEEeecccchHHHHHH
Confidence              1112222334558899999999999999  899999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCeEEEecCCCCCCCHHHHHHHHHHHhhcceEEeeHHHHHHhhc
Q 028963          151 DAFVRGFRVFFSTDATATSDLELHEATLKNLAYGFAYLFDCERLEAGLF  199 (201)
Q Consensus       151 ~a~~~G~~v~vv~Da~~~~~~~~h~~al~~l~~~~~~v~~~~e~~~~l~  199 (201)
                      +|+++||+|+|++|||++++++.|+.+|+.|...++.|++++++++.|.
T Consensus       178 dA~~~Gy~V~Vv~DA~as~~~e~h~~aL~~m~~~~g~V~~t~eil~~L~  226 (253)
T d1nbaa_         178 DAIAKGFRPIIPRETIGDRVPGVVQWNLYDIDNKFGDVESTDSVVQYLD  226 (253)
T ss_dssp             HHHHHTCEEEEEGGGEECSSSSHHHHHHHHHHHHTCEEECHHHHHHHHH
T ss_pred             HHHHCCCEEEEeccccCCCCHHHHHHHHHHHHhcCCEEecHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999998874
>d1j2ra_ c.33.1.3 (A:) Hypothetical protein YecD {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nf9a_ c.33.1.3 (A:) Phenazine biosynthesis protein PhzD {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1im5a_ c.33.1.3 (A:) Pyrazinamidase/nicotinamidase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1yaca_ c.33.1.3 (A:) YcaC {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1x9ga_ c.33.1.3 (A:) Ribonuclease MAR1 {Leishmania donovani [TaxId: 5661]} Back     information, alignment and structure
>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Back     information, alignment and structure