Citrus Sinensis ID: 028984

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200
Protein Sequence
MEDCTKSTKRIAGNVVKTGEEAAAAVEAEASNASLSSKKTKLTSQEVKLPSLENGDSFVVSPHKTSSTSDSVSENFSTSRSSSDDVIKSADLKATSFETEVSTCNNKFSKEETSPLSEICGDSEDQTSMDKPSKTPPESHRRKPSSEEEKIPSAAEIDEFFTAAEKREQERFAEKYNYDIVNDLPLEGRYQWVRLNEASK
Secondary Structure (PSIPRED)
ccHHHHHHccccccEEEHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEcccccc
Secondary Structure Prediction (SSPRO)
cccccHcHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEEEccccc
Coil and Loop (DISEMBL)
MEDCTKSTKRIAGNVVKTGEEAAAAVEAEasnaslsskktkltsqevklpslengdsfvvsphktsstsdsvsenfstsrsssddviksaDLKATSFETEVStcnnkfskeetsplseicgdsedqtsmdkpsktppeshrrkpsseeekipsaaEIDEFFTAAEKREQERFAEKYNYDivndlplegRYQWVRLNEASK
Flexible Loop (DISEMBL)
medctkstkriagnvvktGEEAAAAVEaeasnaslsskktklTSQEVklpslengdsfvvsphktsstsdsvsenfstsrsssddvikSADLKATsfetevstcnnkfskeetsplseicgdsedqtsmdkpsktppeshrrkpsseeekipsaaeiDEFFTAAEKREQERFaekynydivndlplegryqWVRLNEASK
Low Complexity Region (SEG)
MEDCTKSTKRIAGNVVKTGeeaaaaveaeasnaslsskktkltsQEVKLPSLENGDSFVVSPHKTSSTSDSVSENFSTSRSSSDDVIKSADLKATSFETEVSTCNNKFSKEETSPLSEICGDSEDQTSMDKPSKTPPESHRRKPSSEEEKIPSAAEIDEFFTAAEKREQERFAEKYNYDIVNDLPLEGRYQWVRLNEASK
Disordered region (IsUnstruct)
**************************************************************************************************************************************************************************RFAEKYNYDIVNDLPLEGRYQWVRL*****
Disordered Region (DISOPRED)
***********AGNVVKTGE****************************************************************************************************************************************IDEFFTAAEKREQERFAEKYNYDIVNDLPLEGRYQWVRL*****
Disordered Region (DISEMBL)
********KRIAGNVVKT**************************QEVKLPSLENGDSFVV**************************IKSADLKATSFETEVSTCNNK**********EICG******************************PSAAEIDEFFTAAEKREQERFAEKYNYDIVNDLPLEGRYQWVRLNEASK
Disordered Region (DISPRO)
*****KSTKRIAGNVVKTGEEAAAAVEA*************************************************************************************************************************KIPSAAEIDEFFTAAEKREQERFAEKYNYDIVNDLPLEGRYQWVRLN****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEDCTKSTKRIAGNVVKTGEEAAAAVEAEASNASLSSKKTKLTSQEVKLPSLENGDSFVVSPHKTSSTSDSVSENFSTSRSSSDDVIKSADLKATSFETEVSTCNNKFSKEETSPLSEICGDSEDQTSMDKPSKTPPESHRRKPSSEEEKIPSAAEIDEFFTAAEKREQERFAEKYNYDIVNDLPLEGRYQWVRLNEASK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	200	2.2.26 [Sep-21-2011]
Q94CL9	195	Cyclin-dependent kinase i	yes	no	0.51	0.523	0.481	4e-16
Q0WNX9	196	Cyclin-dependent kinase i	no	no	0.45	0.459	0.46	4e-13
Q9FKB5	222	Cyclin-dependent kinase i	no	no	0.225	0.202	0.577	3e-12
Q8GYJ3	289	Cyclin-dependent kinase i	no	no	0.255	0.176	0.440	4e-10
Q7XDH8	194	Cyclin-dependent kinase i	yes	no	0.23	0.237	0.521	5e-10
Q67J15	86	Cyclin-dependent kinase i	no	no	0.35	0.813	0.373	3e-09
Q9LRY0	189	Cyclin-dependent kinase i	no	no	0.37	0.391	0.433	4e-09
Q283L0	221	Cyclin-dependent kinase i	no	no	0.29	0.262	0.482	3e-08
Q9SCR2	209	Cyclin-dependent kinase i	no	no	0.455	0.435	0.393	1e-05
Q67Y93	191	Cyclin-dependent kinase i	no	no	0.225	0.235	0.511	2e-05

>sp|Q94CL9|KRP7_ARATH Cyclin-dependent kinase inhibitor 7 OS=Arabidopsis thaliana GN=KRP7 PE=1 SV=2

 Score = 84.7 bits (208), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 52/108 (48%), Positives = 70/108 (64%), Gaps = 6/108 (5%)

Query: 90  ADLKATSF-ETEVSTC-NNKFSKEETSPLSEICGDSEDQTSMDKPSKTPPESHRRKPSSE 147
           +DL+A    ETE+ST   N F K+  S  SE  G++ +   MD  +    +  + +   +
Sbjct: 90  SDLEAHEISETEISTLLTNNFRKQGISS-SENLGETAE---MDSATTEMRDQRKTEKKKK 145

Query: 148 EEKIPSAAEIDEFFTAAEKREQERFAEKYNYDIVNDLPLEGRYQWVRL 195
            EK P+ AE+D+FF+AAE+ EQ+RF EKYNYDIVND PLEGRYQWV L
Sbjct: 146 MEKSPTQAELDDFFSAAERYEQKRFTEKYNYDIVNDTPLEGRYQWVSL 193

Binds and inhibits CYCD2-1/CDKA-1 complex kinase activity. May target specifically CDKA-1.
Arabidopsis thaliana (taxid: 3702)

>sp|Q0WNX9|KRP6_ARATH Cyclin-dependent kinase inhibitor 6 OS=Arabidopsis thaliana GN=KRP6 PE=1 SV=2

 Score = 74.3 bits (181), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 46/100 (46%), Positives = 63/100 (63%), Gaps = 10/100 (10%)

Query: 98  ETEVSTCNNKFSKEETSPLSEICGDSEDQTSMDKPSKTPPESHRRKPSSEEEKIPSAAEI 157
           ETE ST      ++ETSP+SE  G  E  T M+  S T     R++P     K P+AAEI
Sbjct: 105 ETETSTFITSNFRKETSPVSEGLG--ETTTEMESSSAT----KRKQPGVR--KTPTAAEI 156

Query: 158 DEFFTAAEKRE--QERFAEKYNYDIVNDLPLEGRYQWVRL 195
           ++ F+  E ++  +++F EKYN+DIVND PLEGRY+W RL
Sbjct: 157 EDLFSELESQDDKKKQFIEKYNFDIVNDEPLEGRYKWDRL 196

Binds and inhibits CYCD2-1/CDKA-1 complex kinase activity. Regulates cell division which is crucial for plant growth, development and morphogenesis. May inhibit CDK kinases specifically involved in the G1/S phase transition.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKB5|KRP3_ARATH Cyclin-dependent kinase inhibitor 3 OS=Arabidopsis thaliana GN=KRP3 PE=1 SV=1

 Score = 71.6 bits (174), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 26/45 (57%), Positives = 38/45 (84%)

Query: 151 IPSAAEIDEFFTAAEKREQERFAEKYNYDIVNDLPLEGRYQWVRL 195
           IP+ +E++EFF  AE+++Q  F EKYN+DIVND+PL GRY+WV++
Sbjct: 176 IPTTSEMEEFFAYAEQQQQRLFMEKYNFDIVNDIPLSGRYEWVQV 220

Binds and inhibits CYCD2-1/CDKA-1 complex kinase activity. May target specifically CDKA-1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GYJ3|KRP4_ARATH Cyclin-dependent kinase inhibitor 4 OS=Arabidopsis thaliana GN=KRP4 PE=1 SV=2

 Score = 64.7 bits (156), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 43/59 (72%), Gaps = 8/59 (13%)

Query: 139 SHRRKPSSEEEKIPSAAEIDEFFTAAEKREQERFAEKYNYDIVNDLPLEGRYQWVRLNE 197
           SHRR+P++         E+DEFF+ AE+ +Q++F EKYN+D VN+ PL GR++W ++++
Sbjct: 239 SHRRRPTT--------PEMDEFFSGAEEEQQKQFIEKYNFDPVNEQPLPGRFEWTKVDD 289

Binds and inhibits CYCD2-1/CDKA-1 complex kinase activity. May target specifically CDKA-1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XDH8|KRP4_ORYSJ Cyclin-dependent kinase inhibitor 4 OS=Oryza sativa subsp. japonica GN=KRP4 PE=2 SV=2

 Score = 64.3 bits (155), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 24/46 (52%), Positives = 38/46 (82%)

Query: 151 IPSAAEIDEFFTAAEKREQERFAEKYNYDIVNDLPLEGRYQWVRLN 196
           IP++AE++ FF A E+R+++ F +KYN+D VND PL GR++WV+L+
Sbjct: 149 IPASAELEAFFAAEEQRQRQAFIDKYNFDPVNDCPLPGRFEWVKLD 194

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q67J15|KRP6_ORYSJ Cyclin-dependent kinase inhibitor 6 OS=Oryza sativa subsp. japonica GN=KRP6 PE=3 SV=1

 Score = 61.6 bits (148), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 13/83 (15%)

Query: 115 PLSEICG--DSEDQTSMDKPSKTPPESHRRKPSSEEEKIPSAAEIDEFFTAAEKREQERF 172
           P +  CG  D ++   +D P K           +++ + P   E++ F  AAE     RF
Sbjct: 13  PAASSCGKRDGDNACVVDMPRK-----------AKKGRSPPEEEVEAFLAAAESSVARRF 61

Query: 173 AEKYNYDIVNDLPLEGRYQWVRL 195
           A KYNYDIV D P++GRY+WVR+
Sbjct: 62  AAKYNYDIVKDAPMDGRYEWVRV 84

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9LRY0|KRP5_ARATH Cyclin-dependent kinase inhibitor 5 OS=Arabidopsis thaliana GN=KRP5 PE=1 SV=1

 Score = 61.6 bits (148), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 36/83 (43%), Positives = 51/83 (61%), Gaps = 9/83 (10%)

Query: 118 EICGDSE-----DQTSMDKPSKTPPESHRRKPSSEEEKIPSAAEIDEFFTAAEKREQERF 172
           E CGD+E     D    DK      ES  R   S+ + I S  EI++FF +AE+++Q  F
Sbjct: 109 EACGDNERISRSDCNFGDKGFDL--ESENRSMISDSKSIQS--EIEDFFASAEQQQQRFF 164

Query: 173 AEKYNYDIVNDLPLEGRYQWVRL 195
            +KYN+DIV+D PL GRY+WV++
Sbjct: 165 IQKYNFDIVSDNPLPGRYEWVKV 187

Inhibits CYCD2-1/CDKA-1 complex kinase activity without interaction with the complex.

Arabidopsis thaliana (taxid: 3702)

>sp|Q283L0|KRP5_ORYSJ Cyclin-dependent kinase inhibitor 5 OS=Oryza sativa subsp. japonica GN=KRP5 PE=2 SV=1

 Score = 58.5 bits (140), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 41/58 (70%)

Query: 139 SHRRKPSSEEEKIPSAAEIDEFFTAAEKREQERFAEKYNYDIVNDLPLEGRYQWVRLN 196
           S RR  +S    +PS+ E++EFF AAE+++ + F E+YN+  VND PL GRY+W RL+
Sbjct: 163 SRRRMETSVCRYVPSSLEMEEFFAAAEQQQHQAFRERYNFCPVNDCPLPGRYEWTRLD 220

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9SCR2|KRP2_ARATH Cyclin-dependent kinase inhibitor 2 OS=Arabidopsis thaliana GN=KRP2 PE=1 SV=1

 Score = 50.1 bits (118), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/99 (39%), Positives = 53/99 (53%), Gaps = 8/99 (8%)

Query: 105 NNKFSKE-ETSPLSEICGDSEDQTSMDKPSKTPP--ESHRRKPSSEEEKIPSAAEIDEFF 161
           NN   +E ETS + +    SE+  +MD  S      ES RR   S  E +  A E+++FF
Sbjct: 111 NNGDDRETETSWIYDDLNKSEESMNMDSSSVAVEDVESRRRLRKSLHETVKEA-ELEDFF 169

Query: 162 TAAEKREQERFAE---KYNYDIVNDLPLEG-RYQWVRLN 196
             AEK  + +  E   KYN+D   D PL G RY+WV+LN
Sbjct: 170 QVAEKDLRNKLLECSMKYNFDFEKDEPLGGGRYEWVKLN 208

Binds and inhibits CYCD2-1/CDKA-1 complex kinase activity. Regulates cell division which is crucial for plant growth, development and morphogenesis. May regulate early lateral root initiation by blocking the G1/S phase transition. Controls the mitosis-to-endocycle transition and the onset of the endoreduplication cycle during leaf development through inhibition of mitotic CDKA-1 kinase complexes. Specifically targets CDKA-1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q67Y93|KRP1_ARATH Cyclin-dependent kinase inhibitor 1 OS=Arabidopsis thaliana GN=KRP1 PE=1 SV=2

 Score = 48.9 bits (115), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/45 (51%), Positives = 36/45 (80%)

Query: 151 IPSAAEIDEFFTAAEKREQERFAEKYNYDIVNDLPLEGRYQWVRL 195
           +P+ +EI++FF  AEK+ +E+F +KYN+D   + PLEGRY+WV+L
Sbjct: 146 MPTESEIEDFFVEAEKQLKEKFKKKYNFDFEKEKPLEGRYEWVKL 190

Binds and inhibits CYCD2-1/CDKA-1 kinase complex activity. Regulates cell division which is crucial for plant growth, development and morphogenesis. Functions in turning cells from a mitotic to an endoreplicating cell cycle mode. Acts cell-and non-cell-autonomously to regulate endoreduplication by allowing S phase progression, but blocking entry into mitosis. Keeps on the one hand the plant cell cycle locally controlled, and on the other hand provides a possibility of linking cell cycle control in single cells with the supracellular organization of a tissue or an organ. May target specifically CDKA-1.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	200
255555497	202	conserved hypothetical protein [Ricinus	0.765	0.757	0.492	8e-27
297741301	234	unnamed protein product [Vitis vinifera]	0.515	0.440	0.563	3e-23
359475202	203	PREDICTED: cyclin-dependent kinase inhib	0.515	0.507	0.563	3e-23
118486041	206	unknown [Populus trichocarpa]	0.75	0.728	0.437	5e-22
224103573	206	kip-related cyclin-dependent kinase inhi	0.75	0.728	0.431	1e-21
224123326	207	kip-related cyclin-dependent kinase inhi	0.545	0.526	0.526	1e-21
359480685	227	PREDICTED: cyclin-dependent kinase inhib	0.705	0.621	0.436	2e-20
296082434	212	unnamed protein product [Vitis vinifera]	0.705	0.665	0.44	6e-20
297852642	195	hypothetical protein ARALYDRAFT_474096 [	0.5	0.512	0.550	2e-19
449438418	208	PREDICTED: cyclin-dependent kinase inhib	0.885	0.850	0.357	2e-19

>gi|255555497|ref|XP_002518785.1| conserved hypothetical protein [Ricinus communis] gi|223542166|gb|EEF43710.1| conserved hypothetical protein [Ricinus communis]

 Score =  125 bits (315), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 93/189 (49%), Positives = 116/189 (61%), Gaps = 36/189 (19%)

Query: 37  SKKTKL------TSQEVKLPSLENGDS---FVVSPHKTSSTSDS-----------VSENF 76
           SKK KL        +++KLPSL N +    F VSP  T S + S           VS + 
Sbjct: 18  SKKMKLDFDFDFCYEKLKLPSLTNFNRHHLFTVSPDNTVSPATSSNSGSFLAGNLVSCDS 77

Query: 77  STSRSSSDD---VIKSA----DLKAT-SFETEVS-TC-NNKFSKEETSPLSEICGDSEDQ 126
           + SRSSS+D   V++++    DLK   SFETE S TC NNKFS+E TSP S   GD+++ 
Sbjct: 78  TASRSSSNDSTGVVRNSLSFVDLKVMKSFETESSSTCINNKFSRE-TSPSSSFYGDTDE- 135

Query: 127 TSMDKPSKTPPESHRRKPSSEEEKIPSAAEIDEFFTAAEKREQERFAEKYNYDIVNDLPL 186
             M+ P+  P   + RK     EK+PS  EIDEFF  AEK+EQ+RFA+KYNYDIV DLPL
Sbjct: 136 --MESPA--PVVKNCRKIRLPAEKVPSQVEIDEFFAEAEKKEQKRFADKYNYDIVKDLPL 191

Query: 187 EGRYQWVRL 195
           EGRYQWVRL
Sbjct: 192 EGRYQWVRL 200

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741301|emb|CBI32432.3| unnamed protein product [Vitis vinifera]

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 62/110 (56%), Positives = 80/110 (72%), Gaps = 7/110 (6%)

Query: 87  IKSADLKATSFETEVST-CNNKFSKEETSPLSEICGDSEDQTSMDKPSKTPPESHRRKPS 145
           ++SADL+A  FETE ST  + +FS+E T+P+SE+  DS +   M+  +KT     RRK  
Sbjct: 129 LRSADLEAKGFETENSTYSDGRFSRE-TTPVSELYADSAE---MESTAKTTAAKPRRK-- 182

Query: 146 SEEEKIPSAAEIDEFFTAAEKREQERFAEKYNYDIVNDLPLEGRYQWVRL 195
           S   K+PS  EI+EFF+AAEK +Q+RFAEKYNYDIV D P+EGRYQWVRL
Sbjct: 183 STAGKMPSTVEIEEFFSAAEKYQQQRFAEKYNYDIVKDAPMEGRYQWVRL 232

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359475202|ref|XP_002282040.2| PREDICTED: cyclin-dependent kinase inhibitor 7-like [Vitis vinifera]

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 62/110 (56%), Positives = 80/110 (72%), Gaps = 7/110 (6%)

Query: 87  IKSADLKATSFETEVST-CNNKFSKEETSPLSEICGDSEDQTSMDKPSKTPPESHRRKPS 145
           ++SADL+A  FETE ST  + +FS+E T+P+SE+  DS +   M+  +KT     RRK  
Sbjct: 98  LRSADLEAKGFETENSTYSDGRFSRE-TTPVSELYADSAE---MESTAKTTAAKPRRK-- 151

Query: 146 SEEEKIPSAAEIDEFFTAAEKREQERFAEKYNYDIVNDLPLEGRYQWVRL 195
           S   K+PS  EI+EFF+AAEK +Q+RFAEKYNYDIV D P+EGRYQWVRL
Sbjct: 152 STAGKMPSTVEIEEFFSAAEKYQQQRFAEKYNYDIVKDAPMEGRYQWVRL 201

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118486041|gb|ABK94864.1| unknown [Populus trichocarpa]

 Score =  109 bits (273), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 80/183 (43%), Positives = 99/183 (54%), Gaps = 33/183 (18%)

Query: 37  SKKTKLTSQEVKLPS----LENGDSFVVSP-HKTSSTSDSVSENFSTSRSSSDD------ 85
           SKK K    E  LPS    L+      +SP +  SS + S S+ F T  SS  D      
Sbjct: 25  SKKMKFDFDEFSLPSFNFKLQAHLCTTMSPDNLISSAASSNSDRFITGNSSCGDSPVSCC 84

Query: 86  -------VIKSA----DLKATSFETEVSTCNNKFSKEETSPLSEICGDSEDQTSMDKPSK 134
                  V+K +    DL+A S ETE STCN++    ET+P SE  G       M  P+ 
Sbjct: 85  SSNESIKVVKDSLRFIDLEAKSSETESSTCNDRKFSRETTPSSEFHG-------MYSPAA 137

Query: 135 TPPE--SHRRKPSSEEEKIPSAAEIDEFFTAAEKREQERFAEKYNYDIVNDLPLEGRYQW 192
              +  SHRRK  S   K+PS AEID FF  AE+ EQ+RFAEKYNYD+V DLP+EGRYQW
Sbjct: 138 VEKKENSHRRK--SPAVKMPSQAEIDAFFAGAEREEQKRFAEKYNYDVVKDLPVEGRYQW 195

Query: 193 VRL 195
           + L
Sbjct: 196 ICL 198

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103573|ref|XP_002313108.1| kip-related cyclin-dependent kinase inhibitor 7 [Populus trichocarpa] gi|222849516|gb|EEE87063.1| kip-related cyclin-dependent kinase inhibitor 7 [Populus trichocarpa]

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/183 (43%), Positives = 99/183 (54%), Gaps = 33/183 (18%)

Query: 37  SKKTKLTSQEVKLPS----LENGDSFVVSP-HKTSSTSDSVSENFSTSRSSSDD------ 85
           SKK K    E  LPS    L+      +SP +  SS + S S+ F T  SS  D      
Sbjct: 25  SKKMKFDFDEFSLPSFNFKLQAHLCTTMSPENLISSAASSNSDRFITGNSSCGDSPVSCC 84

Query: 86  -------VIKSA----DLKATSFETEVSTCNNKFSKEETSPLSEICGDSEDQTSMDKPSK 134
                  V+K +    DL+A S ETE STCN++    +T+P SE  G       M  P+ 
Sbjct: 85  SSNESIKVVKDSLRFIDLEAKSSETESSTCNDRKFSRDTTPSSEFHG-------MYSPAA 137

Query: 135 TPPE--SHRRKPSSEEEKIPSAAEIDEFFTAAEKREQERFAEKYNYDIVNDLPLEGRYQW 192
              +  SHRRK  S   K+PS AEID FF  AE+ EQ+RFAEKYNYD+V DLP+EGRYQW
Sbjct: 138 VEKKENSHRRK--SPAVKMPSQAEIDAFFAGAEREEQKRFAEKYNYDVVKDLPVEGRYQW 195

Query: 193 VRL 195
           + L
Sbjct: 196 ICL 198

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123326|ref|XP_002330288.1| kip-related cyclin-dependent kinase inhibitor 6 [Populus trichocarpa] gi|222871323|gb|EEF08454.1| kip-related cyclin-dependent kinase inhibitor 6 [Populus trichocarpa]

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 59/112 (52%), Positives = 72/112 (64%), Gaps = 3/112 (2%)

Query: 85  DVIKSADLKATSFETEVS-TCNNKFSKEETSPLSEICGDSEDQTSMDKPSKTPPESHRRK 143
           D ++  DL+A S ETE S TCN++    ET+P SE  G S D   MD P+    +   R 
Sbjct: 96  DSLRFLDLEAKSPETESSSTCNDRKFSRETTPSSEFHGSSTDH--MDTPAAIEKKESLRP 153

Query: 144 PSSEEEKIPSAAEIDEFFTAAEKREQERFAEKYNYDIVNDLPLEGRYQWVRL 195
             S   K+PS AEID FFT AE+ EQ RFAEKYNYD+V DLP+EGRYQW+ L
Sbjct: 154 RDSPAVKMPSQAEIDAFFTGAEREEQRRFAEKYNYDVVMDLPMEGRYQWICL 205

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359480685|ref|XP_002282199.2| PREDICTED: cyclin-dependent kinase inhibitor 1-like [Vitis vinifera]

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 65/149 (43%), Positives = 94/149 (63%), Gaps = 8/149 (5%)

Query: 50  PSLENGDSFVVSPHKTSSTSDSVSENFSTSRSSSDDV---IKSADLKATSFETEVSTCNN 106
           PS  +G         +S +SD VS +  +S  SS+ V   +K ADL+  S E E S  ++
Sbjct: 82  PSGNSGRVVAEEDQCSSPSSDHVSASCCSSNGSSELVKERLKFADLEEESVEIETSAYSD 141

Query: 107 KFSKEETSPLSEICGDSEDQTSMDKPSKTPPESHRRKPSSEEEKIPSAAEIDEFFTAAEK 166
              + ET+P SE+  +S+D  S  +PS+    ++R +  S  EK+PS +E++EFF AAEK
Sbjct: 142 CRERRETTPSSELRAESDDLESTARPSEA---NYRHR--STVEKMPSESELEEFFAAAEK 196

Query: 167 REQERFAEKYNYDIVNDLPLEGRYQWVRL 195
             Q+RF+EKYNYDIV D+P+EGRY+WVRL
Sbjct: 197 DVQKRFSEKYNYDIVKDVPMEGRYEWVRL 225

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082434|emb|CBI21439.3| unnamed protein product [Vitis vinifera]

 Score =  102 bits (255), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 66/150 (44%), Positives = 96/150 (64%), Gaps = 9/150 (6%)

Query: 50  PSLENGDSFVVSPHKTSSTSDSVSENFSTSRSSSDDV---IKSADLKATSFETEVSTCNN 106
           PS  +G         +S +SD VS +  +S  SS+ V   +K ADL+  S E E S  ++
Sbjct: 66  PSGNSGRVVAEEDQCSSPSSDHVSASCCSSNGSSELVKERLKFADLEEESVEIETSAYSD 125

Query: 107 -KFSKEETSPLSEICGDSEDQTSMDKPSKTPPESHRRKPSSEEEKIPSAAEIDEFFTAAE 165
            + S+ ET+P SE+  +S+D  S  +PS+    ++R +  S  EK+PS +E++EFF AAE
Sbjct: 126 CRESRRETTPSSELRAESDDLESTARPSEA---NYRHR--STVEKMPSESELEEFFAAAE 180

Query: 166 KREQERFAEKYNYDIVNDLPLEGRYQWVRL 195
           K  Q+RF+EKYNYDIV D+P+EGRY+WVRL
Sbjct: 181 KDVQKRFSEKYNYDIVKDVPMEGRYEWVRL 210

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297852642|ref|XP_002894202.1| hypothetical protein ARALYDRAFT_474096 [Arabidopsis lyrata subsp. lyrata] gi|297340044|gb|EFH70461.1| hypothetical protein ARALYDRAFT_474096 [Arabidopsis lyrata subsp. lyrata]

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/109 (55%), Positives = 74/109 (67%), Gaps = 9/109 (8%)

Query: 90  ADLKATSF-ETEVSTC--NNKFSKEETSPLSEICGDSEDQTSMDKPSKTPPESHRRKPSS 146
           +DL+A    ETE+ST   NN FSK+  SPLSE  G+   +  MD  S T     +RK   
Sbjct: 91  SDLEAHEISETEISTLITNNNFSKQ-GSPLSENLGE---RAEMD--SATTERRDQRKTEK 144

Query: 147 EEEKIPSAAEIDEFFTAAEKREQERFAEKYNYDIVNDLPLEGRYQWVRL 195
           + EK P+ AE+D+FF+AAE+ EQ+RF EKYNYDIVND PLEGRYQWV L
Sbjct: 145 KMEKSPTQAELDDFFSAAERFEQKRFTEKYNYDIVNDTPLEGRYQWVSL 193

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438418|ref|XP_004136985.1| PREDICTED: cyclin-dependent kinase inhibitor 7-like [Cucumis sativus]

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/204 (35%), Positives = 107/204 (52%), Gaps = 27/204 (13%)

Query: 4   CTKSTKRIAGNVVKTGEEAAAAVEAEASNASLSSKKTKLTSQEVKLPSLENGDSFVVSPH 63
           C    +RIAG        ++ ++   AS + L  +   L +    L  LEN +S  +   
Sbjct: 18  CMSKRRRIAG--------SSESLRPSASRSDLDDRCLWLENATTSLSRLENKNSIGIIAG 69

Query: 64  KTSSTSDSVSEN-FSTSRSSSDDVIKSA-----------DLKATSFETEVSTCNNKFSKE 111
                SD  SE+ F  S   S+D  K+            +L+  SFET  S   N   +E
Sbjct: 70  --GEMSDGFSEDQFPVSCCFSNDCRKATAVKDAGRFEDLELQTKSFETVESIRVNGIQRE 127

Query: 112 ETSPLSEICGDSEDQTSMDKPSKTPPESHRRKPSSEEEKIPSAAEIDEFFTAAEKREQER 171
            T P S + GDS++   MD P+ T   + ++KP+    K P  +EI++FF+ AEK EQ+R
Sbjct: 128 ST-PTSNLMGDSDE---MDSPA-TIFLTEKQKPTDRPMKTPPISEIEDFFSEAEKYEQKR 182

Query: 172 FAEKYNYDIVNDLPLEGRYQWVRL 195
           F+EKYN+DI+ D+PLEGRYQW+RL
Sbjct: 183 FSEKYNFDIIMDVPLEGRYQWIRL 206

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	200
TAIR|locus:2012186	195	ICK5 [Arabidopsis thaliana (ta	0.675	0.692	0.415	3.9e-21
TAIR|locus:2094118	196	KRP6 "KIP-related protein 6" [	0.67	0.683	0.380	4.7e-16
TAIR|locus:2046427	289	KRP4 "KIP-RELATED PROTEIN 4" [	0.65	0.449	0.338	1.2e-12
TAIR|locus:2087248	189	ICK3 [Arabidopsis thaliana (ta	0.575	0.608	0.336	1e-11
TAIR|locus:2046778	191	ICK1 [Arabidopsis thaliana (ta	0.625	0.654	0.318	4.5e-11
TAIR|locus:2101679	209	KRP2 "KIP-related protein 2" [	0.455	0.435	0.393	1.8e-09
UNIPROTKB|E1BT08	860	HSPH1 "Uncharacterized protein	0.545	0.126	0.317	3.6e-05
DICTYBASE|DDB_G0281217	674	DDB_G0281217 [Dictyostelium di	0.585	0.173	0.310	0.00088

TAIR|locus:2012186 ICK5 [Arabidopsis thaliana (taxid:3702)]

 Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
 Identities = 59/142 (41%), Positives = 84/142 (59%)

Query:    57 SFVVSPHKTSSTSDSVSENFSTSRSSSDDV-IKSADLKATSF-ETEVSTC-NNKFSKEET 113
             S  +S  +    S S+S   S+S ++     +  +DL+A    ETE+ST   N F K+  
Sbjct:    56 SVALSEEEDDHLSSSISSGCSSSETNEIATRLPFSDLEAHEISETEISTLLTNNFRKQGI 115

Query:   114 SPLSEICGDSEDQTSMDKPSKTPPESHRRKPSSEEEKIPSAAEIDEFFTAAEKREQERFA 173
             S  SE  G++ +   MD  +    +  + +   + EK P+ AE+D+FF+AAE+ EQ+RF 
Sbjct:   116 SS-SENLGETAE---MDSATTEMRDQRKTEKKKKMEKSPTQAELDDFFSAAERYEQKRFT 171

Query:   174 EKYNYDIVNDLPLEGRYQWVRL 195
             EKYNYDIVND PLEGRYQWV L
Sbjct:   172 EKYNYDIVNDTPLEGRYQWVSL 193

GO:0004861 "cyclin-dependent protein serine/threonine kinase inhibitor activity" evidence=IEA;TAS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0007050 "cell cycle arrest" evidence=IEA

GO:0030332 "cyclin binding" evidence=IPI

GO:0045736 "negative regulation of cyclin-dependent protein serine/threonine kinase activity" evidence=RCA;IDA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0001673 "male germ cell nucleus" evidence=IDA

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0010440 "stomatal lineage progression" evidence=RCA

GO:0042023 "DNA endoreduplication" evidence=RCA

TAIR|locus:2094118 KRP6 "KIP-related protein 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
 Identities = 59/155 (38%), Positives = 84/155 (54%)

Query:    51 SLENGDSFVVSPHKTSSTSDSVSENFSTSRSSSDDVIKSA-----DLKATSFETEVSTCN 105
             +L + +  V    + S  S S+S    TS S   ++ K++     DL+    ETE  T  
Sbjct:    53 ALASDECSVTIGGEESDQSSSISSGCFTSESK--EIAKNSSSFGVDLEDHQIETETETST 110

Query:   106 ---NKFSKEETSPLSEICGDSEDQTSMDKPSKTPPESHRRKPSSEEEKIPSAAEIDEFFT 162
                + F KE TSP+SE  G  E  T M+  S T     R++P     K P+AAEI++ F+
Sbjct:   111 FITSNFRKE-TSPVSE--GLGETTTEMESSSATK----RKQPGVR--KTPTAAEIEDLFS 161

Query:   163 AAEKREQER--FAEKYNYDIVNDLPLEGRYQWVRL 195
               E ++ ++  F EKYN+DIVND PLEGRY+W RL
Sbjct:   162 ELESQDDKKKQFIEKYNFDIVNDEPLEGRYKWDRL 196

GO:0004861 "cyclin-dependent protein serine/threonine kinase inhibitor activity" evidence=IEA;TAS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0007050 "cell cycle arrest" evidence=IEA

GO:0030332 "cyclin binding" evidence=IPI

GO:0042023 "DNA endoreduplication" evidence=IMP

GO:0045736 "negative regulation of cyclin-dependent protein serine/threonine kinase activity" evidence=IDA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0001673 "male germ cell nucleus" evidence=IDA

TAIR|locus:2046427 KRP4 "KIP-RELATED PROTEIN 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 170 (64.9 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 47/139 (33%), Positives = 75/139 (53%)

Query:    67 STSDSVSEN--FSTSRSSSDDVIKSADLKATSF--ETEVSTCNNKFSKEETSPLSEICGD 122
             S SDSVSE+  F   +    ++ K        F  E E +   N+ ++E T P S I   
Sbjct:   152 SRSDSVSESVVFGKDKDLISEINKDPTFGQNFFDLEEEHTQSFNRTTREST-PCSLIRRP 210

Query:   123 SEDQT--SMDKPSKTPPESHRRKPS--SEEEKIPSAAEIDEFFTAAEKREQERFAEKYNY 178
                 T  S  K +    ES++R+ S      + P+  E+DEFF+ AE+ +Q++F EKYN+
Sbjct:   211 EIMTTPGSSTKLNICVSESNQREDSLSRSHRRRPTTPEMDEFFSGAEEEQQKQFIEKYNF 270

Query:   179 DIVNDLPLEGRYQWVRLNE 197
             D VN+ PL GR++W ++++
Sbjct:   271 DPVNEQPLPGRFEWTKVDD 289

GO:0004861 "cyclin-dependent protein serine/threonine kinase inhibitor activity" evidence=IEA;TAS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0007050 "cell cycle arrest" evidence=IEA

GO:0030332 "cyclin binding" evidence=IPI

GO:0045736 "negative regulation of cyclin-dependent protein serine/threonine kinase activity" evidence=RCA;IDA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0045786 "negative regulation of cell cycle" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA

GO:0010440 "stomatal lineage progression" evidence=RCA

GO:0042023 "DNA endoreduplication" evidence=RCA

TAIR|locus:2087248 ICK3 [Arabidopsis thaliana (taxid:3702)]

 Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
 Identities = 41/122 (33%), Positives = 63/122 (51%)

Query:    77 STSRSSSDDVIKSADLKATSFETEVSTCNNKFSKEETSPLSEICGDSEDQTSMD---KPS 133
             +T +     +I S +   T      S    K   + T+   E CGD+E  +  D      
Sbjct:    70 NTRKQQKQQLIPSVNQCQTKNPRASSGPAKKLEPDTTT--EEACGDNERISRSDCNFGDK 127

Query:   134 KTPPESHRRKPSSEEEKIPSAAEIDEFFTAAEKREQERFAEKYNYDIVNDLPLEGRYQWV 193
                 ES  R   S+ + I S  EI++FF +AE+++Q  F +KYN+DIV+D PL GRY+WV
Sbjct:   128 GFDLESENRSMISDSKSIQS--EIEDFFASAEQQQQRFFIQKYNFDIVSDNPLPGRYEWV 185

Query:   194 RL 195
             ++
Sbjct:   186 KV 187

GO:0004861 "cyclin-dependent protein serine/threonine kinase inhibitor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0007050 "cell cycle arrest" evidence=IEA;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0045736 "negative regulation of cyclin-dependent protein serine/threonine kinase activity" evidence=RCA;IDA

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0010440 "stomatal lineage progression" evidence=RCA

GO:0042023 "DNA endoreduplication" evidence=RCA

TAIR|locus:2046778 ICK1 [Arabidopsis thaliana (taxid:3702)]

 Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
 Identities = 43/135 (31%), Positives = 72/135 (53%)

Query:    63 HKTSSTSDSVSENFSTSRSSSDDVIKSADLKATSFETEVSTCNNKFSKEETSPLSEI--C 120
             H      D  +E  +  R +   + ++  L+    E E+S     +S E  S + E   C
Sbjct:    64 HLEEEDKDGDTETSTYRRGTKRKLFEN--LREEEKE-ELSKSMENYSSEFESAVKESLDC 120

Query:   121 GDSEDQTSMDKPSKTPPESHRRKPSSEEEKIPSAAEIDEFFTAAEKREQERFAEKYNYDI 180
               S  +T M++ + T  E  + K  +E   +P+ +EI++FF  AEK+ +E+F +KYN+D 
Sbjct:   121 CCSGRKT-MEE-TVTAEEEEKAKLMTE---MPTESEIEDFFVEAEKQLKEKFKKKYNFDF 175

Query:   181 VNDLPLEGRYQWVRL 195
               + PLEGRY+WV+L
Sbjct:   176 EKEKPLEGRYEWVKL 190

GO:0004861 "cyclin-dependent protein serine/threonine kinase inhibitor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0007050 "cell cycle arrest" evidence=IEA

GO:0010102 "lateral root morphogenesis" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

GO:0045740 "positive regulation of DNA replication" evidence=IMP

GO:0045736 "negative regulation of cyclin-dependent protein serine/threonine kinase activity" evidence=ISS;RCA;IDA

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=TAS

GO:0010311 "lateral root formation" evidence=IMP

GO:0048366 "leaf development" evidence=IMP

GO:0048367 "shoot system development" evidence=IMP

GO:0048527 "lateral root development" evidence=IMP

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0010440 "stomatal lineage progression" evidence=RCA

GO:0042023 "DNA endoreduplication" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

TAIR|locus:2101679 KRP2 "KIP-related protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
 Identities = 39/99 (39%), Positives = 53/99 (53%)

Query:   105 NNKFSKE-ETSPLSEICGDSEDQTSMDKPSKTPP--ESHRRKPSSEEEKIPSAAEIDEFF 161
             NN   +E ETS + +    SE+  +MD  S      ES RR   S  E +  A E+++FF
Sbjct:   111 NNGDDRETETSWIYDDLNKSEESMNMDSSSVAVEDVESRRRLRKSLHETVKEA-ELEDFF 169

Query:   162 TAAEKREQERFAE---KYNYDIVNDLPLEG-RYQWVRLN 196
               AEK  + +  E   KYN+D   D PL G RY+WV+LN
Sbjct:   170 QVAEKDLRNKLLECSMKYNFDFEKDEPLGGGRYEWVKLN 208

GO:0004861 "cyclin-dependent protein serine/threonine kinase inhibitor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0007050 "cell cycle arrest" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0019210 "kinase inhibitor activity" evidence=IDA

GO:0045736 "negative regulation of cyclin-dependent protein serine/threonine kinase activity" evidence=ISS;RCA;IDA

GO:0042023 "DNA endoreduplication" evidence=RCA;IMP

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0010440 "stomatal lineage progression" evidence=RCA

UNIPROTKB|E1BT08 HSPH1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 120 (47.3 bits), Expect = 3.6e-05, P = 3.6e-05
 Identities = 39/123 (31%), Positives = 57/123 (46%)

Query:    76 FSTSRSSSDDVIKSADLKATSFETEVST-----CNNKFSKEETSPLSEICGDSEDQTSMD 130
             FS S +S  + +KS D +    ETE+ T       N   K      SE    S+ QT   
Sbjct:   494 FSVSTASMVEPVKSEDSEDVGVETELETQDQMPAENSSDKNNQQENSEAGTQSQVQTDGQ 553

Query:   131 KPSKTPPESHRRKPSSEEEKIPSAAEIDEFFTAAEKREQERFAEKYNYDIVN-DLPLEGR 189
             + S++PP S   +P SEE KIP   +     T+ +K +Q   A+K    + N +LP+E  
Sbjct:   554 QTSQSPPSS---EPPSEENKIPDVKK-----TSEKKGDQPPEAKKPKIKVKNVELPIEAN 605

Query:   190 YQW 192
               W
Sbjct:   606 LVW 608

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0043014 "alpha-tubulin binding" evidence=IEA

GO:0051085 "chaperone mediated protein folding requiring cofactor" evidence=IEA

DICTYBASE|DDB_G0281217 DDB_G0281217 [Dictyostelium discoideum (taxid:44689)]

 Score = 109 (43.4 bits), Expect = 0.00088, P = 0.00088
 Identities = 40/129 (31%), Positives = 57/129 (44%)

Query:    62 PHKTSS-TSDSVSENFSTSRSSSDDVIKSADLKATSFETEVSTCNNKFSKEETSPLSEIC 120
             PH +SS TS +++   STS SSS     S    +TS  T  +  NN    + T+ LSE  
Sbjct:   347 PHSSSSSTSTTITPTESTSTSSSASTSTSTST-STSTSTSKNNNNNNIETKNTTSLSESI 405

Query:   121 GDSEDQTSMDKPSKTP------PESHRRKPSSEEEKIPSAAEIDEF----FTAAEKREQE 170
                +D      PSK         +S +++ ++E  K     +  EF    F  AE +E E
Sbjct:   406 ISGDDIVVEFDPSKNKNLFIQNTKSTQKEETTESNKFQENEDYIEFPRDLFEQAENKETE 465

Query:   171 RFAEKYNYD 179
                 K NYD
Sbjct:   466 ESYYKTNYD 474


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.303   0.120   0.324    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      200       175   0.00078  109 3  11 23  0.42    33
                                                     31  0.49    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  8
  No. of states in DFA:  581 (62 KB)
  Total size of DFA:  147 KB (2090 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  26.50u 0.10s 26.60t   Elapsed:  00:00:01
  Total cpu time:  26.50u 0.10s 26.60t   Elapsed:  00:00:01
  Start:  Fri May 10 01:19:29 2013   End:  Fri May 10 01:19:30 2013

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	200
pfam02234	51	pfam02234, CDI, Cyclin-dependent kinase inhibitor	5e-17

>gnl|CDD|216942 pfam02234, CDI, Cyclin-dependent kinase inhibitor

 Score = 71.1 bits (175), Expect = 5e-17
 Identities = 24/45 (53%), Positives = 33/45 (73%)

Query: 152 PSAAEIDEFFTAAEKREQERFAEKYNYDIVNDLPLEGRYQWVRLN 196
               E++EFF AA K +QE F+EK+N+D VND PL GRY+W R++
Sbjct: 7   VDHEELEEFFAAALKEQQEEFSEKWNFDFVNDTPLPGRYEWERVD 51

Cell cycle progression is negatively controlled by cyclin-dependent kinases inhibitors (CDIs). CDIs are involved in cell cycle arrest at the G1 phase. Length = 51

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	200
PF02234	51	CDI: Cyclin-dependent kinase inhibitor; InterPro:	99.75
KOG4743	195	consensus Cyclin-dependent kinase inhibitor [Signa	98.81

>PF02234 CDI: Cyclin-dependent kinase inhibitor; InterPro: IPR003175 Cell cycle progression is negatively controlled by cyclin-dependent kinases inhibitors (CDIs)

Probab=99.75  E-value=3.4e-19  Score=122.77  Aligned_cols=46  Identities=43%  Similarity=0.928  Sum_probs=39.0

Q ss_pred             CCC-hHHHHHHHHHHHHHHHHHHHhhhCCcccCCccCCCccceEEcC
Q 028984          151 IPS-AAEIDEFFTAAEKREQERFAEKYNYDIVNDLPLEGRYQWVRLN  196 (200)
Q Consensus       151 ~Pt-~~E~eeFFa~aEke~q~rF~~KyNFDf~~d~PLeGRYEW~~v~  196 (200)
                      .|+ .+||+.||++++++++++|++||||||++|+||+|||+|++|+
T Consensus         5 gp~d~~e~~~~~~~~l~~~~e~~~~kWNFDF~~~~PL~GryeWe~v~   51 (51)
T PF02234_consen    5 GPVDHEELERFFQEELQEQREEFSEKWNFDFVNDTPLPGRYEWERVD   51 (51)
T ss_dssp             ----HHHHHHHHHHHHTTTTHHHHHHHTEETTTTEE-SSSS--EEEE
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCCCCeEeEeCC
Confidence            366 8999999999999999999999999999999999999999985

CDIs are involved in cell cycle arrest at the G1 phase.; GO: 0004861 cyclin-dependent protein kinase inhibitor activity, 0007050 cell cycle arrest, 0005634 nucleus; PDB: 1H27_E 1JSU_C.

>KOG4743 consensus Cyclin-dependent kinase inhibitor [Signal transduction mechanisms]

Probab=98.81  E-value=5.5e-09  Score=89.73  Aligned_cols=47  Identities=26%  Similarity=0.516  Sum_probs=41.7

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHhhhCCcccCCccCCC--ccceEEcCCC
Q 028984          152 PSAAEIDEFFTAAEKREQERFAEKYNYDIVNDLPLEG--RYQWVRLNEA  198 (200)
Q Consensus       152 Pt~~E~eeFFa~aEke~q~rF~~KyNFDf~~d~PLeG--RYEW~~v~~~  198 (200)
                      |..+|+---|.+.=+++++..++||||||..++||+|  +|+|+.|+-+
T Consensus        26 vd~EElSR~l~s~l~~m~~e~~~KWnFDFq~~~PL~g~g~y~we~V~~~   74 (195)
T KOG4743|consen   26 VDHEELSRDLNSRLERMNEEDQQKWNFDFQQGTPLEGSGDYEWEEVSSD   74 (195)
T ss_pred             CCHHHHhHHHHHHHHHHHHHHHhccCcccccCCcccCCCCceeEEccCC
Confidence            6777787778888789999999999999999999997  9999999754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	200
1jsu_C	84	P27, KIP1, CIP2; complex (transferase/cyclin/inhib	9e-07

>1jsu_C P27, KIP1, CIP2; complex (transferase/cyclin/inhibitor), kinase, cell cycle, cell division, CDK, cyclin, inhibitor; HET: TPO; 2.30A {Homo sapiens} SCOP: j.55.1.1 Length = 84

 Score = 44.2 bits (104), Expect = 9e-07
 Identities = 13/48 (27%), Positives = 22/48 (45%)

Query: 152 PSAAEIDEFFTAAEKREQERFAEKYNYDIVNDLPLEGRYQWVRLNEAS 199
               E+        +  +E    K+N+D  N  PLEG+Y+W  + + S
Sbjct: 14  VDHEELTRDLEKHCRDMEEASQRKWNFDFQNHKPLEGKYEWQEVEKGS 61

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	200
1jsu_C	84	P27, KIP1, CIP2; complex (transferase/cyclin/inhib	99.74

>1jsu_C P27, KIP1, CIP2; complex (transferase/cyclin/inhibitor), kinase, cell cycle, cell division, CDK, cyclin, inhibitor; HET: TPO; 2.30A {Homo sapiens} SCOP: j.55.1.1

Probab=99.74  E-value=9.1e-19  Score=130.85  Aligned_cols=47  Identities=26%  Similarity=0.528  Sum_probs=45.0

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHhhhCCcccCCccCCCccceEEcCCC
Q 028984          152 PSAAEIDEFFTAAEKREQERFAEKYNYDIVNDLPLEGRYQWVRLNEA  198 (200)
Q Consensus       152 Pt~~E~eeFFa~aEke~q~rF~~KyNFDf~~d~PLeGRYEW~~v~~~  198 (200)
                      |..+||++||++++++++++|++||||||++|+||+|||+|++|+..
T Consensus        14 vd~eEl~~~f~~~l~~~~e~~~~KWNFDF~~d~PL~GryeWe~V~~~   60 (84)
T 1jsu_C           14 VDHEELTRDLEKHCRDMEEASQRKWNFDFQNHKPLEGKYEWQEVEKG   60 (84)
T ss_dssp             CCHHHHHHHHHHHHTTTTHHHHHHHTEETTTTEECSSSSCCEEEETT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCceEEEEccCC
Confidence            78899999999999999999999999999999999999999999754

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00