Citrus Sinensis ID: 028986

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200
Protein Sequence
MGCSGSVPARSSGQSGGLNNLENAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLITCTSSYCS
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccEEEEEEEEEccccccHHHHHHHHHcccccccccccccEEEEEcEEEEccccEEEEEEEEcccccccccccHHHHHcccEEEEEEEcccHHHHHHHHHHHHHHHHccccccEEEEEEEcccccccccccHHHHHHHHHHcccEEEEccccccccHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccEEEEEEEEEEccccccHHHHHHHHHcccccccccccccEEEEEEEEEEcccEEEEEEEEEEcccHHHHHHHHHHHccccEEEEEEEcccHHHHHHHHHHHHHHHHHcccccEEEEEEEccccHHHccccHHHHHHHHHHcccEEEEccccccccHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mgcsgsvparssgqsgglnnlenagssdaknLRVKLVLLgdsgvgksCIVLRFvrgqfdptskvtvgasflsqtialqdsttVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYditspdsfnKAQYWVKELQKHGSPDIVMALVGnkadlhekrevpaqdgieyaekNGMFFIETSAKTADNINQLFEVLITCTSSYCS
Flexible Loop (DISEMBL)
mgcsgsvparssgqsgglnnlenagssdaknLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGasflsqtialqdstTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLITCTSSYCS
Low Complexity Region (SEG)
MGCSGSVPARSSGQSGGLNNLENAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGaavavvvYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLITCTSSYCS
Disordered region (IsUnstruct)
*******************************LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLH******AQDGIEYAEKNGMFFIETSAKTADNINQLFEVLITCTSSY**
Disordered Region (DISOPRED)
********************************RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLITCTSSY**
Disordered Region (DISEMBL)
***************GGLNNLENAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLITCTSSYCS
Disordered Region (DISPRO)
**************************SDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLITCTSSYCS
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGCSGSVPARSSGQSGGLNNLENAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLITCTSSYCS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	200	2.2.26 [Sep-21-2011]
Q9CB01	202	Ras-related protein RABF1	yes	no	0.945	0.935	0.878	2e-95
P31583	200	Ras-related protein RHN1	N/A	no	0.815	0.815	0.621	7e-57
P29687	200	Ras-related protein Rab5	N/A	no	0.785	0.785	0.620	3e-55
Q58DS9	216	Ras-related protein Rab-5	yes	no	0.825	0.763	0.608	5e-54
Q86JP3	201	Ras-related protein Rab-5	yes	no	0.81	0.805	0.613	6e-54
P51147	216	Ras-related protein Rab-5	yes	no	0.825	0.763	0.602	2e-53
Q98932	216	Ras-related protein Rab-5	yes	no	0.825	0.763	0.608	2e-53
P35278	216	Ras-related protein Rab-5	yes	no	0.825	0.763	0.602	2e-53
Q5R7L7	216	Ras-related protein Rab-5	yes	no	0.825	0.763	0.602	2e-53
P51148	216	Ras-related protein Rab-5	yes	no	0.825	0.763	0.602	2e-53

>sp|Q9CB01|RABF1_ARATH Ras-related protein RABF1 OS=Arabidopsis thaliana GN=RABF1 PE=1 SV=1

 Score =  347 bits (891), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 166/189 (87%), Positives = 176/189 (93%)

Query: 1   MGCSGSVPARSSGQSGGLNNLENAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDP 60
           MGC+ S+P R+SG   GL+N ENA  +DAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFD 
Sbjct: 1   MGCASSLPDRNSGTLSGLSNSENAVPADAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDA 60

Query: 61  TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPD 120
           TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERY+ALAPLYYRGA VAV+VYDITSP+
Sbjct: 61  TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYSALAPLYYRGAGVAVIVYDITSPE 120

Query: 121 SFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKT 180
           SF KAQYWVKELQKHGSPDIVMALVGNKADLHEKREVP +DG+E AEKNGMFFIETSAKT
Sbjct: 121 SFKKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPTEDGMELAEKNGMFFIETSAKT 180

Query: 181 ADNINQLFE 189
           ADNINQLFE
Sbjct: 181 ADNINQLFE 189

Endosomal protein probably involved in endocytosis. Probably not involved in vacuolar trafficking.
Arabidopsis thaliana (taxid: 3702)

>sp|P31583|RHN1_NICPL Ras-related protein RHN1 OS=Nicotiana plumbaginifolia GN=RHN1 PE=2 SV=1

 Score =  219 bits (559), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 102/164 (62%), Positives = 132/164 (80%), Gaps = 1/164 (0%)

Query: 25  GSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVK 84
            SS   NL  KLVLLGD G GKS +V+RFV+GQF    + T+GA+F S T+A+ ++T VK
Sbjct: 2   ASSSHNNLNAKLVLLGDMGAGKSSLVIRFVKGQFLEFQESTIGAAFFSSTLAVNNAT-VK 60

Query: 85  FEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMAL 144
           FEIWDTAGQERY +LAP+YYRGAA A++VYDITS DSF +A+ WV+ELQK G+P++VMAL
Sbjct: 61  FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITSSDSFARAKKWVQELQKQGNPNMVMAL 120

Query: 145 VGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
            GNKADL ++R+V A++   YAE+NG+FF+ETSAKTA N+N +F
Sbjct: 121 AGNKADLEDRRKVTAEEARLYAEENGLFFMETSAKTAVNVNAIF 164

Protein transport. Probably involved in vesicular traffic.

Nicotiana plumbaginifolia (taxid: 4092)

>sp|P29687|RAB5_TOBAC Ras-related protein Rab5 OS=Nicotiana tabacum GN=RAB5 PE=2 SV=1

 Score =  214 bits (545), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 98/158 (62%), Positives = 129/158 (81%), Gaps = 1/158 (0%)

Query: 31  NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDT 90
           NL  KLVLLGD G GKS +V+RFV+GQF    + T+GA+F S T+++ ++T VKFEIWDT
Sbjct: 8   NLNAKLVLLGDMGAGKSSLVIRFVKGQFLEFQESTIGAAFFSSTVSVNNAT-VKFEIWDT 66

Query: 91  AGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKAD 150
           AGQERY +LAP+YYRGAA A++VYDITS +S  +A+ WV+ELQK G+P++VMAL GNKAD
Sbjct: 67  AGQERYHSLAPMYYRGAAAAIIVYDITSTESLARAKKWVQELQKQGNPNMVMALAGNKAD 126

Query: 151 LHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
           L +KR+V A++   YAE+NG+FF+ETSAKTA N+N +F
Sbjct: 127 LEDKRKVTAEEARLYAEENGLFFMETSAKTATNVNDIF 164

Protein transport. Probably involved in vesicular traffic.

Nicotiana tabacum (taxid: 4097)

>sp|Q58DS9|RAB5C_BOVIN Ras-related protein Rab-5C OS=Bos taurus GN=RAB5C PE=2 SV=1

 Score =  210 bits (534), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 101/166 (60%), Positives = 128/166 (77%), Gaps = 1/166 (0%)

Query: 23  NAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTT 82
           N  ++  K  + KLVLLG+S VGKS +VLRFV+GQF    + T+GA+FL+QT+ L D TT
Sbjct: 11  NGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCL-DDTT 69

Query: 83  VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVM 142
           VKFEIWDTAGQERY +LAP+YYRGA  A+VVYDIT+ D+F +A+ WVKELQ+  SP+IV+
Sbjct: 70  VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVI 129

Query: 143 ALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
           AL GNKADL  KR V  Q+   YAE N + F+ETSAKTA N+N++F
Sbjct: 130 ALAGNKADLASKRAVEFQEAQAYAEDNSLLFMETSAKTAMNVNEIF 175

Protein transport. Probably involved in vesicular traffic.

Bos taurus (taxid: 9913)

>sp|Q86JP3|RAB5A_DICDI Ras-related protein Rab-5A OS=Dictyostelium discoideum GN=rab5A PE=3 SV=1

 Score =  210 bits (534), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 100/163 (61%), Positives = 127/163 (77%), Gaps = 1/163 (0%)

Query: 26  SSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKF 85
           +++ K  + KLVLLG++ VGKS +VLRFVRG F    + T+GA+FL+QT+ L D TTVKF
Sbjct: 2   NNNNKIFQFKLVLLGEAAVGKSSLVLRFVRGHFLDYQESTIGAAFLAQTVCLND-TTVKF 60

Query: 86  EIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALV 145
           EIWDTAGQERY  LAP+YYRGA  A+VVYDI S DSF +A  WVKELQ+ GSP+IV+AL 
Sbjct: 61  EIWDTAGQERYHTLAPMYYRGAQAAIVVYDIRSEDSFERAIKWVKELQRQGSPNIVIALA 120

Query: 146 GNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
           GNK DL  KR+V   +  +YAE+NG+ F+ETSAKT+ N+N+LF
Sbjct: 121 GNKLDLAAKRKVETAEAQQYAEENGLLFMETSAKTSQNVNELF 163

Required for the fusion of plasma membranes and early endosomes.

Dictyostelium discoideum (taxid: 44689)

>sp|P51147|RAB5C_CANFA Ras-related protein Rab-5C OS=Canis familiaris GN=RAB5C PE=2 SV=1

 Score =  208 bits (530), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 100/166 (60%), Positives = 128/166 (77%), Gaps = 1/166 (0%)

Query: 23  NAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTT 82
           N  ++  K  + KLVLLG+S VGKS +VLRFV+GQF    + T+GA+FL+QT+ L D TT
Sbjct: 11  NGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCL-DDTT 69

Query: 83  VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVM 142
           VKFEIWDTAGQERY +LAP+YYRGA  A+VVYDIT+ D+F +A+ WVKELQ+  SP+IV+
Sbjct: 70  VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVI 129

Query: 143 ALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
           AL GNKADL  KR V  Q+   YA+ N + F+ETSAKTA N+N++F
Sbjct: 130 ALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIF 175

Protein transport. Probably involved in vesicular traffic.

Canis familiaris (taxid: 9615)

>sp|Q98932|RAB5C_CHICK Ras-related protein Rab-5C OS=Gallus gallus GN=RAB5C PE=1 SV=1

 Score =  208 bits (530), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 101/166 (60%), Positives = 128/166 (77%), Gaps = 1/166 (0%)

Query: 23  NAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTT 82
           N  ++  K  + KLVLLG+S VGKS +VLRFV+GQF    + T+GA+FL+QT+ L D TT
Sbjct: 11  NGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCL-DDTT 69

Query: 83  VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVM 142
           VKFEIWDTAGQERY +LAP+YYRGA  A+VVYDIT+ D+F +A+ WVKELQ+  SP+IV+
Sbjct: 70  VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFVRAKNWVKELQRQASPNIVI 129

Query: 143 ALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
           AL GNKADL  KR V  QD   YA+ N + F+ETSAKTA N+N++F
Sbjct: 130 ALAGNKADLATKRAVDFQDAQTYADDNSLLFMETSAKTAMNVNEIF 175

Protein transport. Probably involved in vesicular traffic.

Gallus gallus (taxid: 9031)

>sp|P35278|RAB5C_MOUSE Ras-related protein Rab-5C OS=Mus musculus GN=Rab5c PE=1 SV=2

 Score =  208 bits (530), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 100/166 (60%), Positives = 128/166 (77%), Gaps = 1/166 (0%)

Query: 23  NAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTT 82
           N  ++  K  + KLVLLG+S VGKS +VLRFV+GQF    + T+GA+FL+QT+ L D TT
Sbjct: 11  NGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCL-DDTT 69

Query: 83  VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVM 142
           VKFEIWDTAGQERY +LAP+YYRGA  A+VVYDIT+ D+F +A+ WVKELQ+  SP+IV+
Sbjct: 70  VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVI 129

Query: 143 ALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
           AL GNKADL  KR V  Q+   YA+ N + F+ETSAKTA N+N++F
Sbjct: 130 ALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIF 175

Protein transport. Probably involved in vesicular traffic.

Mus musculus (taxid: 10090)

>sp|Q5R7L7|RAB5C_PONAB Ras-related protein Rab-5C OS=Pongo abelii GN=RAB5C PE=2 SV=1

 Score =  208 bits (530), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 100/166 (60%), Positives = 128/166 (77%), Gaps = 1/166 (0%)

Query: 23  NAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTT 82
           N  ++  K  + KLVLLG+S VGKS +VLRFV+GQF    + T+GA+FL+QT+ L D TT
Sbjct: 11  NGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCL-DDTT 69

Query: 83  VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVM 142
           VKFEIWDTAGQERY +LAP+YYRGA  A+VVYDIT+ D+F +A+ WVKELQ+  SP+IV+
Sbjct: 70  VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVI 129

Query: 143 ALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
           AL GNKADL  KR V  Q+   YA+ N + F+ETSAKTA N+N++F
Sbjct: 130 ALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIF 175

Protein transport. Probably involved in vesicular traffic.

Pongo abelii (taxid: 9601)

>sp|P51148|RAB5C_HUMAN Ras-related protein Rab-5C OS=Homo sapiens GN=RAB5C PE=1 SV=2

 Score =  208 bits (530), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 100/166 (60%), Positives = 128/166 (77%), Gaps = 1/166 (0%)

Query: 23  NAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTT 82
           N  ++  K  + KLVLLG+S VGKS +VLRFV+GQF    + T+GA+FL+QT+ L D TT
Sbjct: 11  NGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCL-DDTT 69

Query: 83  VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVM 142
           VKFEIWDTAGQERY +LAP+YYRGA  A+VVYDIT+ D+F +A+ WVKELQ+  SP+IV+
Sbjct: 70  VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVI 129

Query: 143 ALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
           AL GNKADL  KR V  Q+   YA+ N + F+ETSAKTA N+N++F
Sbjct: 130 ALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIF 175

Protein transport. Probably involved in vesicular traffic.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	200
224113085	201	predicted protein [Populus trichocarpa]	0.945	0.940	0.910	4e-99
255577452	224	protein with unknown function [Ricinus c	0.945	0.843	0.910	2e-97
224097801	201	predicted protein [Populus trichocarpa]	0.945	0.940	0.899	3e-97
225448984	200	PREDICTED: ras-related protein RABF1 [Vi	0.94	0.94	0.920	4e-97
18410144	202	Ras-related small GTP-binding family pro	0.945	0.935	0.878	1e-93
145332843	193	Ras-related small GTP-binding family pro	0.945	0.979	0.878	1e-93
3153154	201	small GTP-binding protein [Mesembryanthe	0.945	0.940	0.867	5e-93
297816780	202	predicted protein [Arabidopsis lyrata su	0.945	0.935	0.878	1e-92
449444622	199	PREDICTED: ras-related protein RABF1-lik	0.935	0.939	0.883	4e-92
84626822	200	small GTPase Rab5b [Nicotiana tabacum]	0.94	0.94	0.883	8e-92

>gi|224113085|ref|XP_002316386.1| predicted protein [Populus trichocarpa] gi|118488888|gb|ABK96253.1| unknown [Populus trichocarpa x Populus deltoides] gi|222865426|gb|EEF02557.1| predicted protein [Populus trichocarpa]

 Score =  365 bits (938), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 172/189 (91%), Positives = 182/189 (96%)

Query: 1   MGCSGSVPARSSGQSGGLNNLENAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDP 60
           MGCS S+P RS+G+ GGLNN E+ G +DAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDP
Sbjct: 1   MGCSSSLPDRSTGRLGGLNNSESGGVADAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDP 60

Query: 61  TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPD 120
           TSKVT+GASFLSQTIALQDSTT+KFEIWDTAGQERYAALAPLYYRGAAVAV+VYDITSP+
Sbjct: 61  TSKVTIGASFLSQTIALQDSTTIKFEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSPE 120

Query: 121 SFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKT 180
           +FNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVP QDGIEYAEKNGMFFIETSAKT
Sbjct: 121 TFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPTQDGIEYAEKNGMFFIETSAKT 180

Query: 181 ADNINQLFE 189
           ADNINQLFE
Sbjct: 181 ADNINQLFE 189

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255577452|ref|XP_002529605.1| protein with unknown function [Ricinus communis] gi|223530938|gb|EEF32797.1| protein with unknown function [Ricinus communis]

 Score =  360 bits (923), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 172/189 (91%), Positives = 180/189 (95%)

Query: 1   MGCSGSVPARSSGQSGGLNNLENAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDP 60
           MGC+ S+P R+SG+ GGLNN +N G SDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDP
Sbjct: 1   MGCASSLPDRNSGRLGGLNNSDNNGVSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDP 60

Query: 61  TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPD 120
           TSKVT+GASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAV+VYDITSPD
Sbjct: 61  TSKVTIGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSPD 120

Query: 121 SFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKT 180
           SFNKAQYWVKELQKHGSPDIVMALVGNKADLH+ REVP QDG EYAEKNGMFFIETSAKT
Sbjct: 121 SFNKAQYWVKELQKHGSPDIVMALVGNKADLHDNREVPVQDGKEYAEKNGMFFIETSAKT 180

Query: 181 ADNINQLFE 189
           ADNINQLFE
Sbjct: 181 ADNINQLFE 189

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224097801|ref|XP_002311076.1| predicted protein [Populus trichocarpa] gi|222850896|gb|EEE88443.1| predicted protein [Populus trichocarpa]

 Score =  359 bits (922), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 170/189 (89%), Positives = 180/189 (95%)

Query: 1   MGCSGSVPARSSGQSGGLNNLENAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDP 60
           MGCS S+P RS+G+ GGLNN E+ G  DAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDP
Sbjct: 1   MGCSSSLPDRSTGRLGGLNNSESGGVVDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDP 60

Query: 61  TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPD 120
           TSKVT+GASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAV+VYDITSP+
Sbjct: 61  TSKVTIGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSPE 120

Query: 121 SFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKT 180
           +FNKAQYWVKELQKHGSPDIVMALVGNKADL EKREVP QDGI+YAEKNGMFF+ETSAKT
Sbjct: 121 TFNKAQYWVKELQKHGSPDIVMALVGNKADLQEKREVPTQDGIDYAEKNGMFFMETSAKT 180

Query: 181 ADNINQLFE 189
           ADNINQLFE
Sbjct: 181 ADNINQLFE 189

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225448984|ref|XP_002270699.1| PREDICTED: ras-related protein RABF1 [Vitis vinifera] gi|147864853|emb|CAN79376.1| hypothetical protein VITISV_009584 [Vitis vinifera] gi|296085986|emb|CBI31427.3| unnamed protein product [Vitis vinifera]

 Score =  359 bits (921), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 174/189 (92%), Positives = 180/189 (95%), Gaps = 1/189 (0%)

Query: 1   MGCSGSVPARSSGQSGGLNNLENAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDP 60
           MGCS S+P R+SG+ GGLN  EN G+ DAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDP
Sbjct: 1   MGCSSSLPDRNSGRLGGLN-AENGGAPDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDP 59

Query: 61  TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPD 120
           TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSP+
Sbjct: 60  TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPE 119

Query: 121 SFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKT 180
           SFNKAQYWVKELQKHGSPDIVMALVGNKADLHE REVP QDGI+YAEKNGMFFIETSAKT
Sbjct: 120 SFNKAQYWVKELQKHGSPDIVMALVGNKADLHENREVPVQDGIDYAEKNGMFFIETSAKT 179

Query: 181 ADNINQLFE 189
           ADNINQLFE
Sbjct: 180 ADNINQLFE 188

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18410144|ref|NP_567008.1| Ras-related small GTP-binding family protein [Arabidopsis thaliana] gi|75169988|sp|Q9CB01.1|RABF1_ARATH RecName: Full=Ras-related protein RABF1; Short=AtRABF1; AltName: Full=Ras-related protein Ara-6; AltName: Full=Ras-related protein Rab5C; Short=AtRab5C gi|13160603|dbj|BAB32953.1| Ara6 [Arabidopsis thaliana] gi|27754459|gb|AAO22677.1| putative Rab family GTP-binding protein (Ara6) [Arabidopsis thaliana] gi|28393957|gb|AAO42386.1| putative Rab family GTP-binding protein (Ara6) [Arabidopsis thaliana] gi|332645777|gb|AEE79298.1| Ras-related small GTP-binding family protein [Arabidopsis thaliana]

 Score =  347 bits (891), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 166/189 (87%), Positives = 176/189 (93%)

Query: 1   MGCSGSVPARSSGQSGGLNNLENAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDP 60
           MGC+ S+P R+SG   GL+N ENA  +DAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFD 
Sbjct: 1   MGCASSLPDRNSGTLSGLSNSENAVPADAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDA 60

Query: 61  TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPD 120
           TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERY+ALAPLYYRGA VAV+VYDITSP+
Sbjct: 61  TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYSALAPLYYRGAGVAVIVYDITSPE 120

Query: 121 SFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKT 180
           SF KAQYWVKELQKHGSPDIVMALVGNKADLHEKREVP +DG+E AEKNGMFFIETSAKT
Sbjct: 121 SFKKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPTEDGMELAEKNGMFFIETSAKT 180

Query: 181 ADNINQLFE 189
           ADNINQLFE
Sbjct: 181 ADNINQLFE 189

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145332843|ref|NP_001078287.1| Ras-related small GTP-binding family protein [Arabidopsis thaliana] gi|222423401|dbj|BAH19672.1| AT3G54840 [Arabidopsis thaliana] gi|332645778|gb|AEE79299.1| Ras-related small GTP-binding family protein [Arabidopsis thaliana]

 Score =  347 bits (890), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 166/189 (87%), Positives = 176/189 (93%)

Query: 1   MGCSGSVPARSSGQSGGLNNLENAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDP 60
           MGC+ S+P R+SG   GL+N ENA  +DAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFD 
Sbjct: 1   MGCASSLPDRNSGTLSGLSNSENAVPADAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDA 60

Query: 61  TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPD 120
           TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERY+ALAPLYYRGA VAV+VYDITSP+
Sbjct: 61  TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYSALAPLYYRGAGVAVIVYDITSPE 120

Query: 121 SFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKT 180
           SF KAQYWVKELQKHGSPDIVMALVGNKADLHEKREVP +DG+E AEKNGMFFIETSAKT
Sbjct: 121 SFKKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPTEDGMELAEKNGMFFIETSAKT 180

Query: 181 ADNINQLFE 189
           ADNINQLFE
Sbjct: 181 ADNINQLFE 189

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3153154|emb|CAA06922.1| small GTP-binding protein [Mesembryanthemum crystallinum]

 Score =  345 bits (886), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 164/189 (86%), Positives = 174/189 (92%)

Query: 1   MGCSGSVPARSSGQSGGLNNLENAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDP 60
           MGC+ S P R+  +     N  N G+SDAKNL+VKLVLLGDSGVGKSCIVLRFVRGQFDP
Sbjct: 1   MGCASSAPDRTVSRGSSSLNSANEGASDAKNLKVKLVLLGDSGVGKSCIVLRFVRGQFDP 60

Query: 61  TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPD 120
           TSKVTVGASFLSQTIALQDS+TVKFEIWDTAGQERYAALAPLYYRGAAVAV+VYDITSP+
Sbjct: 61  TSKVTVGASFLSQTIALQDSSTVKFEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSPE 120

Query: 121 SFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKT 180
           SF KAQYWVKELQKHGSPDI+MALVGNKADL E+REVPAQDGIEYAEKNGMFFIETSAKT
Sbjct: 121 SFTKAQYWVKELQKHGSPDIIMALVGNKADLQERREVPAQDGIEYAEKNGMFFIETSAKT 180

Query: 181 ADNINQLFE 189
           ADNINQLFE
Sbjct: 181 ADNINQLFE 189

Source: Mesembryanthemum crystallinum

Species: Mesembryanthemum crystallinum

Genus: Mesembryanthemum

Family: Aizoaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297816780|ref|XP_002876273.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297322111|gb|EFH52532.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  344 bits (883), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 166/189 (87%), Positives = 175/189 (92%)

Query: 1   MGCSGSVPARSSGQSGGLNNLENAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDP 60
           MGC+ S+P R+SG   GL+N ENA  +DAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFD 
Sbjct: 1   MGCATSLPDRNSGALSGLSNSENAVPADAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDA 60

Query: 61  TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPD 120
           TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERY+ALAPLYYRGA VAV+VYDITSP+
Sbjct: 61  TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYSALAPLYYRGAGVAVIVYDITSPE 120

Query: 121 SFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKT 180
           SF KAQYWVKELQKHGSPDIVMALVGNKADLHEKREVP +DGI  AEKNGMFFIETSAKT
Sbjct: 121 SFKKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPTEDGIGLAEKNGMFFIETSAKT 180

Query: 181 ADNINQLFE 189
           ADNINQLFE
Sbjct: 181 ADNINQLFE 189

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449444622|ref|XP_004140073.1| PREDICTED: ras-related protein RABF1-like [Cucumis sativus] gi|449490416|ref|XP_004158599.1| PREDICTED: ras-related protein RABF1-like [Cucumis sativus]

 Score =  342 bits (878), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 167/189 (88%), Positives = 178/189 (94%), Gaps = 2/189 (1%)

Query: 1   MGCSGSVPARSSGQSGGLNNLENAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDP 60
           MGCS SVP R+SG+SGGLN  EN+ ++D+KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDP
Sbjct: 1   MGCSSSVPDRASGRSGGLNP-ENS-AADSKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDP 58

Query: 61  TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPD 120
           TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAV+VYDITS D
Sbjct: 59  TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSSD 118

Query: 121 SFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKT 180
           SF KAQYWVKELQKHGSPDI++ALVGNKADL EKR+V  QDG EYAEKNGMFFIETSAKT
Sbjct: 119 SFAKAQYWVKELQKHGSPDIILALVGNKADLQEKRKVTVQDGTEYAEKNGMFFIETSAKT 178

Query: 181 ADNINQLFE 189
           ADNIN+LFE
Sbjct: 179 ADNINELFE 187

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|84626822|gb|ABC59814.1| small GTPase Rab5b [Nicotiana tabacum]

 Score =  341 bits (875), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 167/189 (88%), Positives = 176/189 (93%), Gaps = 1/189 (0%)

Query: 1   MGCSGSVPARSSGQSGGLNNLENAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDP 60
           MGC+ SV  R+SG++ GLN  +N G+ D KNL+VKLVLLGDSGVGKSCIVLRFVRGQFDP
Sbjct: 1   MGCASSVADRNSGRAAGLNP-DNGGAVDPKNLKVKLVLLGDSGVGKSCIVLRFVRGQFDP 59

Query: 61  TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPD 120
           TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSP+
Sbjct: 60  TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPE 119

Query: 121 SFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKT 180
           SF KAQYWVKELQKHGSPDIVMALVGNKADLHEKREV  QDGI+ AEKNGMFFIETSAKT
Sbjct: 120 SFAKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVTTQDGIDCAEKNGMFFIETSAKT 179

Query: 181 ADNINQLFE 189
           ADNINQLFE
Sbjct: 180 ADNINQLFE 188

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	200
TAIR|locus:2082672	202	ARA6 [Arabidopsis thaliana (ta	0.945	0.935	0.851	2.8e-82
FB|FBgn0014010	219	Rab5 "Rab5" [Drosophila melano	0.885	0.808	0.566	9.8e-48
ZFIN|ZDB-GENE-040426-2593	214	rab5b "RAB5B, member RAS oncog	0.825	0.771	0.578	2e-47
UNIPROTKB|Q58DS9	216	RAB5C "Ras-related protein Rab	0.87	0.805	0.559	4.2e-47
UNIPROTKB|F2Z560	216	RAB5C "Uncharacterized protein	0.87	0.805	0.559	4.2e-47
UNIPROTKB|Q98932	216	RAB5C "Ras-related protein Rab	0.87	0.805	0.559	5.4e-47
DICTYBASE|DDB_G0271984	201	rab5A "Rab GTPase" [Dictyostel	0.81	0.805	0.588	6.9e-47
ZFIN|ZDB-GENE-031118-30	221	rab5c "RAB5C, member RAS oncog	0.86	0.778	0.566	6.9e-47
UNIPROTKB|P51147	216	RAB5C "Ras-related protein Rab	0.87	0.805	0.553	8.8e-47
UNIPROTKB|P51148	216	RAB5C "Ras-related protein Rab	0.87	0.805	0.553	8.8e-47

TAIR|locus:2082672 ARA6 [Arabidopsis thaliana (taxid:3702)]

 Score = 825 (295.5 bits), Expect = 2.8e-82, P = 2.8e-82
 Identities = 161/189 (85%), Positives = 170/189 (89%)

Query:     1 MGCSGSVPARSSGQSGGLNNLENAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDP 60
             MGC+ S+P R+SG   GL+N ENA  +DAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFD 
Sbjct:     1 MGCASSLPDRNSGTLSGLSNSENAVPADAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDA 60

Query:    61 TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPD 120
             TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERY+ALAPLYYRG       YDITSP+
Sbjct:    61 TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYSALAPLYYRGAGVAVIVYDITSPE 120

Query:   121 SFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKT 180
             SF KAQYWVKELQKHGSPDIVMALVGNKADLHEKREVP +DG+E AEKNGMFFIETSAKT
Sbjct:   121 SFKKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPTEDGMELAEKNGMFFIETSAKT 180

Query:   181 ADNINQLFE 189
             ADNINQLFE
Sbjct:   181 ADNINQLFE 189

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0015031 "protein transport" evidence=IEA

GO:0003924 "GTPase activity" evidence=IDA

GO:0005769 "early endosome" evidence=IDA

GO:0010009 "external side of endosome membrane" evidence=IDA

GO:0045022 "early endosome to late endosome transport" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005768 "endosome" evidence=IDA

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0016197 "endosomal transport" evidence=RCA

FB|FBgn0014010 Rab5 "Rab5" [Drosophila melanogaster (taxid:7227)]

 Score = 499 (180.7 bits), Expect = 9.8e-48, P = 9.8e-48
 Identities = 102/180 (56%), Positives = 128/180 (71%)

Query:    10 RSSGQSG-GLNNLENAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGA 68
             RS G SG G     N G+S  K+ + KLVLLG+S VGKS +VLRFV+GQF    + T+GA
Sbjct:     6 RSGGASGTGTAQRPN-GTSQNKSCQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGA 64

Query:    69 SFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYW 128
             +FL+QTI ++D T VKFEIWDTAGQERY +LAP+YYRG       YDI + DSF +A+ W
Sbjct:    65 AFLTQTICIED-TVVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDIQNQDSFQRAKTW 123

Query:   129 VKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
             VKEL K  SP+IV+AL GNKADL   R V   +  +YAE+NG+ F+ETSAKT  N+N +F
Sbjct:   124 VKELHKQASPNIVIALAGNKADLSNIRVVEFDEAKQYAEENGLLFMETSAKTGMNVNDIF 183

GO:0005525 "GTP binding" evidence=IEA;NAS

GO:0003924 "GTPase activity" evidence=ISS;NAS

GO:0048488 "synaptic vesicle endocytosis" evidence=TAS

GO:0016189 "synaptic vesicle to endosome fusion" evidence=IMP;TAS

GO:0005769 "early endosome" evidence=IDA;NAS

GO:0006325 "chromatin organization" evidence=IMP

GO:0016321 "female meiosis chromosome segregation" evidence=IMP

GO:0007067 "mitosis" evidence=IMP

GO:0050803 "regulation of synapse structure and activity" evidence=IMP

GO:0007349 "cellularization" evidence=IMP

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0007298 "border follicle cell migration" evidence=IMP

GO:0006897 "endocytosis" evidence=IMP

GO:0008285 "negative regulation of cell proliferation" evidence=IMP

GO:0035088 "establishment or maintenance of apical/basal cell polarity" evidence=IMP

GO:0005811 "lipid particle" evidence=IDA

GO:0031982 "vesicle" evidence=ISS

GO:0007220 "Notch receptor processing" evidence=IMP

GO:0035220 "wing disc development" evidence=IMP

GO:0048477 "oogenesis" evidence=IMP

GO:0030100 "regulation of endocytosis" evidence=IMP

GO:0034058 "endosomal vesicle fusion" evidence=IMP

GO:0007409 "axonogenesis" evidence=IMP

GO:0048813 "dendrite morphogenesis" evidence=IMP

GO:0046664 "dorsal closure, amnioserosa morphology change" evidence=IMP

GO:0048803 "imaginal disc-derived male genitalia morphogenesis" evidence=IMP

ZFIN|ZDB-GENE-040426-2593 rab5b "RAB5B, member RAS oncogene family" [Danio rerio (taxid:7955)]

 Score = 496 (179.7 bits), Expect = 2.0e-47, P = 2.0e-47
 Identities = 96/166 (57%), Positives = 122/166 (73%)

Query:    23 NAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTT 82
             N      K  + KLVLLGD  VGKS +VLRFV+GQFD   + T+GA+FL+Q++ L D TT
Sbjct:    10 NGNLPQTKICQFKLVLLGDMAVGKSSLVLRFVKGQFDEFQETTIGAAFLAQSVCLDD-TT 68

Query:    83 VKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVM 142
             VKFEIWDTAGQERY +LAP+YYRG       +DIT P++F +A+ WVKELQ+  SP+IV+
Sbjct:    69 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVFDITKPETFERAKAWVKELQRQASPNIVI 128

Query:   143 ALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
             AL GNKADL +KR V  ++   YAE  G+ F+ETSAKTA N+N+LF
Sbjct:   129 ALAGNKADLADKRLVEYEEAQTYAEDTGLLFMETSAKTAMNVNELF 174

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|Q58DS9 RAB5C "Ras-related protein Rab-5C" [Bos taurus (taxid:9913)]

 Score = 493 (178.6 bits), Expect = 4.2e-47, P = 4.2e-47
 Identities = 99/177 (55%), Positives = 127/177 (71%)

Query:    12 SGQSGGLNNLENAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFL 71
             +G+ G      N  ++  K  + KLVLLG+S VGKS +VLRFV+GQF    + T+GA+FL
Sbjct:     2 AGRGGAAR--PNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFL 59

Query:    72 SQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKE 131
             +QT+ L D TTVKFEIWDTAGQERY +LAP+YYRG       YDIT+ D+F +A+ WVKE
Sbjct:    60 TQTVCLDD-TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKE 118

Query:   132 LQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
             LQ+  SP+IV+AL GNKADL  KR V  Q+   YAE N + F+ETSAKTA N+N++F
Sbjct:   119 LQRQASPNIVIALAGNKADLASKRAVEFQEAQAYAEDNSLLFMETSAKTAMNVNEIF 175

GO:0019003 "GDP binding" evidence=ISS

GO:0042470 "melanosome" evidence=IEA

GO:0031901 "early endosome membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0030139 "endocytic vesicle" evidence=IEA

GO:0030100 "regulation of endocytosis" evidence=IEA

GO:0007032 "endosome organization" evidence=IEA

GO:0005811 "lipid particle" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|F2Z560 RAB5C "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 493 (178.6 bits), Expect = 4.2e-47, P = 4.2e-47
 Identities = 99/177 (55%), Positives = 127/177 (71%)

Query:    12 SGQSGGLNNLENAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFL 71
             +G+ G      N  ++  K  + KLVLLG+S VGKS +VLRFV+GQF    + T+GA+FL
Sbjct:     2 AGRGGAAR--PNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFL 59

Query:    72 SQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKE 131
             +QT+ L D TTVKFEIWDTAGQERY +LAP+YYRG       YDIT+ D+F +A+ WVKE
Sbjct:    60 TQTVCLDD-TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKE 118

Query:   132 LQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
             LQ+  SP+IV+AL GNKADL  KR V  Q+   YAE N + F+ETSAKTA N+N++F
Sbjct:   119 LQRQASPNIVIALAGNKADLASKRAVEFQEAQAYAEDNSLLFMETSAKTAMNVNEIF 175

GO:0030139 "endocytic vesicle" evidence=IEA

GO:0030100 "regulation of endocytosis" evidence=IEA

GO:0007032 "endosome organization" evidence=IEA

GO:0005811 "lipid particle" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|Q98932 RAB5C "Ras-related protein Rab-5C" [Gallus gallus (taxid:9031)]

 Score = 492 (178.3 bits), Expect = 5.4e-47, P = 5.4e-47
 Identities = 99/177 (55%), Positives = 127/177 (71%)

Query:    12 SGQSGGLNNLENAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFL 71
             +G+ G      N  ++  K  + KLVLLG+S VGKS +VLRFV+GQF    + T+GA+FL
Sbjct:     2 AGRGGAAR--PNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFL 59

Query:    72 SQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKE 131
             +QT+ L D TTVKFEIWDTAGQERY +LAP+YYRG       YDIT+ D+F +A+ WVKE
Sbjct:    60 TQTVCLDD-TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFVRAKNWVKE 118

Query:   132 LQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
             LQ+  SP+IV+AL GNKADL  KR V  QD   YA+ N + F+ETSAKTA N+N++F
Sbjct:   119 LQRQASPNIVIALAGNKADLATKRAVDFQDAQTYADDNSLLFMETSAKTAMNVNEIF 175

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0031901 "early endosome membrane" evidence=IEA

GO:0019003 "GDP binding" evidence=ISS

DICTYBASE|DDB_G0271984 rab5A "Rab GTPase" [Dictyostelium discoideum (taxid:44689)]

 Score = 491 (177.9 bits), Expect = 6.9e-47, P = 6.9e-47
 Identities = 96/163 (58%), Positives = 122/163 (74%)

Query:    26 SSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKF 85
             +++ K  + KLVLLG++ VGKS +VLRFVRG F    + T+GA+FL+QT+ L D TTVKF
Sbjct:     2 NNNNKIFQFKLVLLGEAAVGKSSLVLRFVRGHFLDYQESTIGAAFLAQTVCLND-TTVKF 60

Query:    86 EIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALV 145
             EIWDTAGQERY  LAP+YYRG       YDI S DSF +A  WVKELQ+ GSP+IV+AL 
Sbjct:    61 EIWDTAGQERYHTLAPMYYRGAQAAIVVYDIRSEDSFERAIKWVKELQRQGSPNIVIALA 120

Query:   146 GNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
             GNK DL  KR+V   +  +YAE+NG+ F+ETSAKT+ N+N+LF
Sbjct:   121 GNKLDLAAKRKVETAEAQQYAEENGLLFMETSAKTSQNVNELF 163

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0010008 "endosome membrane" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

ZFIN|ZDB-GENE-031118-30 rab5c "RAB5C, member RAS oncogene family" [Danio rerio (taxid:7955)]

 Score = 491 (177.9 bits), Expect = 6.9e-47, P = 6.9e-47
 Identities = 98/173 (56%), Positives = 123/173 (71%)

Query:    16 GGLNNLENAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTI 75
             GG      A     K  + KLVLLG+S VGKS +VLRFV+GQF    + T+GA+FL+QT+
Sbjct:     5 GGPARTNGAAPVGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTL 64

Query:    76 ALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKH 135
              L D TTVKFEIWDTAGQERY +LAP+YYRG       YDIT+ D+F +A+ WVKELQ+ 
Sbjct:    65 CLDD-TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFTRAKNWVKELQRQ 123

Query:   136 GSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
              SP+IV+AL GNKADL  KR V  Q+   YA+ N + F+ETSAKTA N+N++F
Sbjct:   124 ASPNIVIALAGNKADLANKRAVDFQEAQAYADDNSLLFMETSAKTAMNVNEIF 176

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0001702 "gastrulation with mouth forming second" evidence=IMP

GO:0016337 "cell-cell adhesion" evidence=IMP

GO:0030100 "regulation of endocytosis" evidence=IMP

GO:0001525 "angiogenesis" evidence=IMP

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005768 "endosome" evidence=IDA

UNIPROTKB|P51147 RAB5C "Ras-related protein Rab-5C" [Canis lupus familiaris (taxid:9615)]

 Score = 490 (177.5 bits), Expect = 8.8e-47, P = 8.8e-47
 Identities = 98/177 (55%), Positives = 127/177 (71%)

Query:    12 SGQSGGLNNLENAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFL 71
             +G+ G      N  ++  K  + KLVLLG+S VGKS +VLRFV+GQF    + T+GA+FL
Sbjct:     2 AGRGGAAR--PNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFL 59

Query:    72 SQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKE 131
             +QT+ L D TTVKFEIWDTAGQERY +LAP+YYRG       YDIT+ D+F +A+ WVKE
Sbjct:    60 TQTVCLDD-TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKE 118

Query:   132 LQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
             LQ+  SP+IV+AL GNKADL  KR V  Q+   YA+ N + F+ETSAKTA N+N++F
Sbjct:   119 LQRQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIF 175

GO:0019003 "GDP binding" evidence=ISS

GO:0042470 "melanosome" evidence=IEA

GO:0031901 "early endosome membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0030139 "endocytic vesicle" evidence=IEA

GO:0030100 "regulation of endocytosis" evidence=IEA

GO:0007032 "endosome organization" evidence=IEA

GO:0005811 "lipid particle" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|P51148 RAB5C "Ras-related protein Rab-5C" [Homo sapiens (taxid:9606)]

 Score = 490 (177.5 bits), Expect = 8.8e-47, P = 8.8e-47
 Identities = 98/177 (55%), Positives = 127/177 (71%)

Query:    12 SGQSGGLNNLENAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFL 71
             +G+ G      N  ++  K  + KLVLLG+S VGKS +VLRFV+GQF    + T+GA+FL
Sbjct:     2 AGRGGAAR--PNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFL 59

Query:    72 SQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKE 131
             +QT+ L D TTVKFEIWDTAGQERY +LAP+YYRG       YDIT+ D+F +A+ WVKE
Sbjct:    60 TQTVCLDD-TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKE 118

Query:   132 LQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
             LQ+  SP+IV+AL GNKADL  KR V  Q+   YA+ N + F+ETSAKTA N+N++F
Sbjct:   119 LQRQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIF 175

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007032 "endosome organization" evidence=IEA

GO:0030100 "regulation of endocytosis" evidence=IEA

GO:0030139 "endocytic vesicle" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0031901 "early endosome membrane" evidence=IEA

GO:0042470 "melanosome" evidence=IEA

GO:0005811 "lipid particle" evidence=IDA

GO:0019003 "GDP binding" evidence=IDA

GO:0003924 "GTPase activity" evidence=TAS

GO:0006184 "GTP catabolic process" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P51148	RAB5C_HUMAN	No assigned EC number	0.6024	0.825	0.7638	yes	no
Q98932	RAB5C_CHICK	No assigned EC number	0.6084	0.825	0.7638	yes	no
Q58DS9	RAB5C_BOVIN	No assigned EC number	0.6084	0.825	0.7638	yes	no
P51147	RAB5C_CANFA	No assigned EC number	0.6024	0.825	0.7638	yes	no
P36586	YPT5_SCHPO	No assigned EC number	0.5352	0.845	0.8009	yes	no
P35278	RAB5C_MOUSE	No assigned EC number	0.6024	0.825	0.7638	yes	no
Q9CB01	RABF1_ARATH	No assigned EC number	0.8783	0.945	0.9356	yes	no
Q86JP3	RAB5A_DICDI	No assigned EC number	0.6134	0.81	0.8059	yes	no
Q5R7L7	RAB5C_PONAB	No assigned EC number	0.6024	0.825	0.7638	yes	no
P36017	VPS21_YEAST	No assigned EC number	0.5506	0.77	0.7333	yes	no
P31583	RHN1_NICPL	No assigned EC number	0.6219	0.815	0.815	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	200
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	1e-103
pfam00071	162	pfam00071, Ras, Ras family	5e-82
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	2e-80
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	5e-78
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	1e-70
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	2e-65
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	1e-64
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	6e-61
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	2e-59
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	7e-55
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	6e-54
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	2e-53
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	2e-52
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	3e-51
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	6e-51
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	1e-50
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	2e-49
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	5e-47
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	2e-46
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	3e-43
cd04118	193	cd04118, Rab24, Rab GTPase family 24 (Rab24)	5e-42
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	2e-41
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	4e-40
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	6e-40
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	8e-40
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	2e-39
smart00173	164	smart00173, RAS, Ras subfamily of RAS small GTPase	2e-39
smart00010	166	smart00010, small_GTPase, Small GTPase of the Ras	3e-39
cd04106	162	cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-	6e-38
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	1e-37
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	5e-36
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	5e-36
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	2e-34
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	2e-34
PTZ00099	176	PTZ00099, PTZ00099, rab6; Provisional	5e-33
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	9e-33
cd04132	197	cd04132, Rho4_like, Ras homology family 4 (Rho4) o	9e-33
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	3e-32
cd04116	170	cd04116, Rab9, Rab GTPase family 9 (Rab9)	2e-30
smart00174	174	smart00174, RHO, Rho (Ras homology) subfamily of R	2e-30
cd04109	213	cd04109, Rab28, Rab GTPase family 28 (Rab28)	2e-30
cd00877	166	cd00877, Ran, Ras-related nuclear proteins (Ran)/T	6e-30
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	1e-29
cd04137	180	cd04137, RheB, Ras Homolog Enriched in Brain (RheB	5e-29
cd04175	164	cd04175, Rap1, Rap1 family GTPase consists of Rap1	5e-29
cd01870	175	cd01870, RhoA_like, Ras homology family A (RhoA)-l	6e-29
cd04121	189	cd04121, Rab40, Rab GTPase family 40 (Rab40) conta	8e-29
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	9e-29
cd04136	164	cd04136, Rap_like, Rap-like family consists of Rap	4e-28
cd04145	164	cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3	5e-28
cd04144	190	cd04144, Ras2, Rat sarcoma (Ras) family 2 of small	7e-28
cd04138	162	cd04138, H_N_K_Ras_like, Ras GTPase family contain	1e-27
cd04177	168	cd04177, RSR1, RSR1/Bud1p family GTPase	2e-27
cd04124	161	cd04124, RabL2, Rab GTPase-like family 2 (Rab-like	2e-27
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	3e-27
cd09914	161	cd09914, RocCOR, Ras of complex proteins (Roc) C-t	8e-26
cd04176	163	cd04176, Rap2, Rap2 family GTPase consists of Rap2	8e-26
PTZ00369	189	PTZ00369, PTZ00369, Ras-like protein; Provisional	9e-26
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	1e-25
cd04101	167	cd04101, RabL4, Rab GTPase-like family 4 (Rab-like	9e-25
cd04126	220	cd04126, Rab20, Rab GTPase family 20 (Rab20)	9e-24
PTZ00132	215	PTZ00132, PTZ00132, GTP-binding nuclear protein Ra	1e-23
cd04128	182	cd04128, Spg1, Septum-promoting GTPase (Spg1)	1e-23
cd04146	166	cd04146, RERG_RasL11_like, Ras-related and Estroge	5e-23
cd04133	173	cd04133, Rop_like, Rho-related protein from plants	1e-22
cd04141	172	cd04141, Rit_Rin_Ric, Ras-like protein in all tiss	1e-22
PLN03071	219	PLN03071, PLN03071, GTP-binding nuclear protein Ra	4e-22
cd04140	165	cd04140, ARHI_like, A Ras homolog member I (ARHI)	5e-22
cd04130	173	cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W	9e-22
cd04129	190	cd04129, Rho2, Ras homology family 2 (Rho2) of sma	2e-21
cd01871	174	cd01871, Rac1_like, Ras-related C3 botulinum toxin	3e-19
pfam08477	116	pfam08477, Miro, Miro-like protein	4e-19
cd01875	191	cd01875, RhoG, Ras homolog family, member G (RhoG)	9e-19
cd04148	219	cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam	1e-18
cd04147	197	cd04147, Ras_dva, Ras - dorsal-ventral anterior lo	4e-18
cd04131	176	cd04131, Rnd, Rho family GTPase subfamily Rnd incl	4e-18
cd04134	185	cd04134, Rho3, Ras homology family 3 (Rho3) of sma	6e-18
smart00176	200	smart00176, RAN, Ran (Ras-related nuclear proteins	2e-17
cd04143	247	cd04143, Rhes_like, Ras homolog enriched in striat	6e-16
cd01874	175	cd01874, Cdc42, cell division cycle 42 (Cdc42) is	5e-15
cd04172	182	cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases	8e-13
cd00878	158	cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf	1e-12
cd04135	174	cd04135, Tc10, Rho GTPase TC10 (Tc10)	1e-12
cd01893	168	cd01893, Miro1, Mitochondrial Rho family 1 (Miro1)	4e-12
cd04142	198	cd04142, RRP22, Ras-related protein on chromosome	1e-11
cd01873	195	cd01873, RhoBTB, RhoBTB protein is an atypical mem	3e-10
cd04174	232	cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases	4e-10
cd04173	221	cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases	7e-09
PLN00023	334	PLN00023, PLN00023, GTP-binding protein; Provision	3e-08
smart00177	175	smart00177, ARF, ARF-like small GTPases; ARF, ADP-	2e-07
pfam00025	174	pfam00025, Arf, ADP-ribosylation factor family	7e-07
cd04102	204	cd04102, RabL3, Rab GTPase-like family 3 (Rab-like	3e-06
cd04149	168	cd04149, Arf6, ADP ribosylation factor 6 (Arf6)	5e-06
cd04159	159	cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl	5e-06
cd01892	180	cd01892, Miro2, Mitochondrial Rho family 2 (Miro2)	9e-06
TIGR03918	391	TIGR03918, GTP_HydF, [FeFe] hydrogenase H-cluster	3e-05
cd04153	174	cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8)	5e-05
COG2229	187	COG2229, COG2229, Predicted GTPase [General functi	5e-05
cd04158	169	cd04158, ARD1, (ADP-ribosylation factor domain pro	8e-05
cd04156	160	cd04156, ARLTS1, Arf-like tumor suppressor gene 1	8e-05
pfam04670	230	pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserve	3e-04
cd04152	183	cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7)	4e-04
PTZ00133	182	PTZ00133, PTZ00133, ADP-ribosylation factor; Provi	5e-04
COG0486	454	COG0486, ThdF, Predicted GTPase [General function	7e-04
cd04164	159	cd04164, trmE, trmE is a tRNA modification GTPase	0.002
pfam07728	135	pfam07728, AAA_5, AAA domain (dynein-related subfa	0.002

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score =  295 bits (757), Expect = e-103
 Identities = 103/157 (65%), Positives = 129/157 (82%), Gaps = 1/157 (0%)

Query: 33  RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAG 92
           + KLVLLGDS VGKS IVLRFV+ +F    + T+GA+FL+QT+ L D TTVKFEIWDTAG
Sbjct: 1   QFKLVLLGDSSVGKSSIVLRFVKNEFSENQESTIGAAFLTQTVNLDD-TTVKFEIWDTAG 59

Query: 93  QERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLH 152
           QERY +LAP+YYRGAA A+VVYDITS +SF KA+ WVKELQ+HG P+IV+AL GNKADL 
Sbjct: 60  QERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQEHGPPNIVIALAGNKADLE 119

Query: 153 EKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFE 189
            KR+V  ++  EYA++NG+ F+ETSAKT +N+N+LF 
Sbjct: 120 SKRQVSTEEAQEYADENGLLFMETSAKTGENVNELFT 156

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score =  240 bits (615), Expect = 5e-82
 Identities = 76/158 (48%), Positives = 109/158 (68%), Gaps = 1/158 (0%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           KLVL+GD GVGKS +++RF + +F      T+G  F ++TI + D  TVK +IWDTAGQE
Sbjct: 1   KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEV-DGKTVKLQIWDTAGQE 59

Query: 95  RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
           R+ AL PLYYRGA   ++VYDITS DSF   + W++E+ +H   ++ + LVGNK DL ++
Sbjct: 60  RFRALRPLYYRGAQGFLLVYDITSRDSFENVKKWLEEILRHADENVPIVLVGNKCDLEDQ 119

Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
           R V  ++G   A++ G+ F+ETSAKT +N+ + FE L 
Sbjct: 120 RVVSTEEGEALAKELGLPFMETSAKTNENVEEAFEELA 157

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score =  236 bits (605), Expect = 2e-80
 Identities = 73/160 (45%), Positives = 112/160 (70%), Gaps = 1/160 (0%)

Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
            K+VL+GDSGVGK+ ++LRFV  +F    K T+G  F S+TI +     VK +IWDTAGQ
Sbjct: 1   FKIVLIGDSGVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTIEVDG-KKVKLQIWDTAGQ 59

Query: 94  ERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE 153
           ER+ ++   YYRGA  A++VYD+T+ +SF     W+ EL+++  P+I + LVGNK+DL +
Sbjct: 60  ERFRSITSSYYRGAHGAILVYDVTNRESFENLDKWLNELKEYAPPNIPIILVGNKSDLED 119

Query: 154 KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT 193
           +R+V  ++  ++A++NG+ F ETSAKT +N+++ FE L  
Sbjct: 120 ERQVSTEEAQQFAKENGLLFFETSAKTGENVDEAFESLAR 159

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score =  230 bits (588), Expect = 5e-78
 Identities = 76/160 (47%), Positives = 113/160 (70%), Gaps = 1/160 (0%)

Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
            K++L+GDSGVGKS ++ RF  G+F    K T+G  F ++TI + D   VK +IWDTAGQ
Sbjct: 1   FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEV-DGKRVKLQIWDTAGQ 59

Query: 94  ERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE 153
           ER+ ++   YYRGA  A++VYDIT+ +SF   + W+KEL+++ SP++V+ LVGNK+DL E
Sbjct: 60  ERFRSITSSYYRGAVGALLVYDITNRESFENLENWLKELREYASPNVVIMLVGNKSDLEE 119

Query: 154 KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT 193
           +R+V  ++   +AE++G+ F ETSAKT  N+ + FE L  
Sbjct: 120 QRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAR 159

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score =  211 bits (540), Expect = 1e-70
 Identities = 80/159 (50%), Positives = 110/159 (69%), Gaps = 1/159 (0%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           K+VL+GDSGVGKS ++ RF R +F+  SK T+G  F ++TI + D  T+K +IWDTAGQE
Sbjct: 5   KIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRTIQI-DGKTIKAQIWDTAGQE 63

Query: 95  RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
           RY A+   YYRGA  A++VYDIT   +F   + W+KEL+ H   +IV+ LVGNK+DL   
Sbjct: 64  RYRAITSAYYRGAVGALLVYDITKKSTFENVERWLKELRDHADSNIVIMLVGNKSDLRHL 123

Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT 193
           R VP ++   +AEKNG+ FIETSA    N+ + F+ L+T
Sbjct: 124 RAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLLT 162

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score =  197 bits (504), Expect = 2e-65
 Identities = 72/155 (46%), Positives = 105/155 (67%), Gaps = 1/155 (0%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           KLV LGD  VGK+ I+ RF+   FD   + T+G  FLS+T+ + D T V+ ++WDTAGQE
Sbjct: 2   KLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYVDDKT-VRLQLWDTAGQE 60

Query: 95  RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
           R+ +L P Y R ++VAVVVYDIT+  SF+    W+ +++     D+++ LVGNK DL +K
Sbjct: 61  RFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDK 120

Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFE 189
           R+V  ++G + A++N   FIETSAK   N+ QLF+
Sbjct: 121 RQVSTEEGEKKAKENNAMFIETSAKAGHNVKQLFK 155

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score =  195 bits (499), Expect = 1e-64
 Identities = 72/158 (45%), Positives = 98/158 (62%), Gaps = 1/158 (0%)

Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
            K+VLLG+  VGK+ +VLR+V  +F+   + T  ASF  +T+ +     +   IWDTAGQ
Sbjct: 1   FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKR-IDLAIWDTAGQ 59

Query: 94  ERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE 153
           ERY AL P+YYR A  A++VYDIT  DSF K + W+KEL++    +I + +VGNK DL  
Sbjct: 60  ERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLER 119

Query: 154 KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVL 191
           +R V   +  EYA+  G    ETSAKT   I +LF  L
Sbjct: 120 QRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSL 157

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score =  186 bits (475), Expect = 6e-61
 Identities = 75/161 (46%), Positives = 101/161 (62%), Gaps = 3/161 (1%)

Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           +K++L+GDSGVGKS ++LRF    FD     T+G  F  +T+ + D   VK  IWDTAGQ
Sbjct: 1   LKILLIGDSGVGKSSLLLRFTDDTFDEDLSSTIGVDFKVKTVTV-DGKKVKLAIWDTAGQ 59

Query: 94  ERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLH 152
           ER+  L   YYRGA   ++VYD+T  D+F+    W+ EL  +  +PD V  LVGNK D  
Sbjct: 60  ERFRTLTSSYYRGAQGVILVYDVTRRDTFDNLDTWLNELDTYSTNPDAVKMLVGNKIDK- 118

Query: 153 EKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT 193
           E REV  ++G ++A K+ M FIETSAKT   + Q FE L+ 
Sbjct: 119 ENREVTREEGQKFARKHNMLFIETSAKTRIGVQQAFEELVE 159

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score =  183 bits (466), Expect = 2e-59
 Identities = 72/157 (45%), Positives = 100/157 (63%), Gaps = 1/157 (0%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           KL+L+GDSGVGKSC++LRF    F+P+   T+G  F  +TI L D   +K +IWDTAGQE
Sbjct: 5   KLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIEL-DGKKIKLQIWDTAGQE 63

Query: 95  RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
           R+  +   YYRGA   ++VYDIT   SF   + W++ + +H S D+   LVGNK D+ EK
Sbjct: 64  RFRTITTSYYRGAMGIILVYDITDEKSFENIKNWMRNIDEHASEDVERMLVGNKCDMEEK 123

Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVL 191
           R V  ++G   A + G+ F+ETSAK   N+ + F  L
Sbjct: 124 RVVSKEEGEALAREYGIKFLETSAKANINVEEAFLTL 160

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score =  171 bits (436), Expect = 7e-55
 Identities = 65/154 (42%), Positives = 107/154 (69%), Gaps = 1/154 (0%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           K +++GD+GVGKSC++L+F   +F P   +T+G  F ++ I + D   +K +IWDTAGQE
Sbjct: 6   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITI-DGKQIKLQIWDTAGQE 64

Query: 95  RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
            + ++   YYRGAA A++VYDIT  ++FN    W+++ ++H + ++ + L+GNK DL  +
Sbjct: 65  SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESR 124

Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
           REV  ++G  +A ++G+ F+ETSAKTA N+ + F
Sbjct: 125 REVSYEEGEAFAREHGLIFMETSAKTASNVEEAF 158

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score =  169 bits (430), Expect = 6e-54
 Identities = 70/154 (45%), Positives = 103/154 (66%), Gaps = 1/154 (0%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           KL+L+GDSGVGKSC++LRF    +  +   T+G  F  +TI L D  TVK +IWDTAGQE
Sbjct: 4   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-DGKTVKLQIWDTAGQE 62

Query: 95  RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
           R+  +   YYRGA   ++VYD+T  +SFN  + W++E+ ++ S ++   LVGNK DL +K
Sbjct: 63  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDK 122

Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
           + V   +  E+A++ G+ F+ETSAK A N+ + F
Sbjct: 123 KVVDYTEAKEFADELGIPFLETSAKNATNVEEAF 156

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score =  167 bits (425), Expect = 2e-53
 Identities = 68/155 (43%), Positives = 103/155 (66%), Gaps = 1/155 (0%)

Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
            K +++G +G GKSC++ +F+  +F   S  T+G  F S+ + +    +VK +IWDTAGQ
Sbjct: 1   FKFLIIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGG-KSVKLQIWDTAGQ 59

Query: 94  ERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE 153
           ER+ ++   YYRGAA A++VYDITS +SFN    W+ + +   SPDIV+ LVGNK DL +
Sbjct: 60  ERFRSVTRSYYRGAAGALLVYDITSRESFNALTNWLTDARTLASPDIVIILVGNKKDLED 119

Query: 154 KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
            REV   +   +A++NG+ F+ETSA T +N+ + F
Sbjct: 120 DREVTFLEASRFAQENGLLFLETSALTGENVEEAF 154

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score =  167 bits (423), Expect = 2e-52
 Identities = 76/159 (47%), Positives = 108/159 (67%), Gaps = 1/159 (0%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           K+VL+GDSGVGKS I+ RF R +F   SK T+G  F ++T+ + +  TVK +IWDTAGQE
Sbjct: 14  KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQV-EGKTVKAQIWDTAGQE 72

Query: 95  RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
           RY A+   YYRGA  A++VYDIT   +F+  Q W++EL+ H   +IV+ + GNK+DL+  
Sbjct: 73  RYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHL 132

Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT 193
           R V  +DG   AEK G+ F+ETSA  A N+ + F+ ++ 
Sbjct: 133 RSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTILL 171

Length = 216

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score =  162 bits (412), Expect = 3e-51
 Identities = 65/159 (40%), Positives = 105/159 (66%), Gaps = 1/159 (0%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           K+VL+G++GVGK+C+V RF +G F P    T+G  F+ +T+ ++    +K +IWDTAGQE
Sbjct: 9   KIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIK-GEKIKLQIWDTAGQE 67

Query: 95  RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
           R+ ++   YYR A   ++ YDIT  +SF     W++E++++ +  ++  LVGNK DL E+
Sbjct: 68  RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAER 127

Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT 193
           REV  Q   E+++   M+++ETSAK +DN+ +LF  L  
Sbjct: 128 REVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLAC 166

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score =  161 bits (410), Expect = 6e-51
 Identities = 66/160 (41%), Positives = 101/160 (63%), Gaps = 2/160 (1%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           K++L+GDS VGK+C+V RF  G F      T+G  F  +T+ +     VK +IWDTAGQE
Sbjct: 5   KIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEI-QGKRVKLQIWDTAGQE 63

Query: 95  RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
           R+  +   YYR A  A++ YDIT   SF    +W++E++K+G+ ++V+ L+GNK DL E+
Sbjct: 64  RFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQ 123

Query: 155 REVPAQDGIEYAEKNGMFF-IETSAKTADNINQLFEVLIT 193
           REV  ++    AE  G+   +ETSAK + N+ + F ++ T
Sbjct: 124 REVLFEEACTLAEHYGILAVLETSAKESSNVEEAFLLMAT 163

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score =  160 bits (407), Expect = 1e-50
 Identities = 64/160 (40%), Positives = 95/160 (59%), Gaps = 3/160 (1%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           KLV+LG  GVGKS + +RFV G+F      T+  S+  + I + D  T   +I DTAGQE
Sbjct: 1   KLVVLGAGGVGKSALTIRFVSGEFVEEYDPTIEDSY-RKQIVV-DGETYTLDILDTAGQE 58

Query: 95  RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKE-LQKHGSPDIVMALVGNKADLHE 153
            ++A+   Y R     ++VY ITS +SF + +   ++ L+     D+ + LVGNK DL  
Sbjct: 59  EFSAMRDQYIRNGDGFILVYSITSRESFEEIKNIREQILRVKDKEDVPIVLVGNKCDLEN 118

Query: 154 KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT 193
           +R+V  ++G   AE+ G  F+ETSAKT  NI++LF  L+ 
Sbjct: 119 ERQVSTEEGEALAEEWGCPFLETSAKTNINIDELFNTLVR 158

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score =  157 bits (399), Expect = 2e-49
 Identities = 62/154 (40%), Positives = 100/154 (64%), Gaps = 1/154 (0%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           K +++GD GVGKSC++ +F   +F      T+G  F ++ I +     +K +IWDTAGQE
Sbjct: 4   KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQK-IKLQIWDTAGQE 62

Query: 95  RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
           R+ A+   YYRGAA A++VYDIT   ++N    W+ + +   +P+ V+ L+GNKADL  +
Sbjct: 63  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQ 122

Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
           R+V  ++  ++A++NG+ F+E SAKT +N+   F
Sbjct: 123 RDVTYEEAKQFADENGLLFLECSAKTGENVEDAF 156

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score =  153 bits (387), Expect = 5e-47
 Identities = 63/154 (40%), Positives = 108/154 (70%), Gaps = 1/154 (0%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           K +++GD+GVGKSC++L+F   +F P   +T+G  F ++ I + D+  +K +IWDTAGQE
Sbjct: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITI-DNKPIKLQIWDTAGQE 66

Query: 95  RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
            + ++   YYRGAA A++VYDIT  ++FN    W+++ ++H + ++ + L+GNK DL  +
Sbjct: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126

Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
           R V  ++G ++A+++G+ F+E SAKTA N+ + F
Sbjct: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 160

Length = 210

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score =  151 bits (384), Expect = 2e-46
 Identities = 64/158 (40%), Positives = 101/158 (63%), Gaps = 1/158 (0%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           +L+++GDS VGKS ++ RF  G+F   S  TVG  F S+ I ++    +K ++WDTAGQE
Sbjct: 4   RLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQE 63

Query: 95  RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPD-IVMALVGNKADLHE 153
           R+ ++   YYR +   ++V+DIT+ +SF     W++E + H  P   V  LVG+K DL  
Sbjct: 64  RFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLES 123

Query: 154 KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVL 191
           +R+V  ++  + A+  GM +IETSA+T DN+ + FE+L
Sbjct: 124 QRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELL 161

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score =  142 bits (359), Expect = 3e-43
 Identities = 65/164 (39%), Positives = 99/164 (60%), Gaps = 6/164 (3%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           K+++LGDSGVGK+ ++ ++V  +F    K T+GA FL++ + + D   V  +IWDTAGQE
Sbjct: 2   KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTV-DDRLVTLQIWDTAGQE 60

Query: 95  RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSP----DIVMALVGNKAD 150
           R+ +L   +YRGA   V+VYD+T+P SF     W  E     SP    +    ++GNK D
Sbjct: 61  RFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPRDPENFPFVVLGNKID 120

Query: 151 LHEKREVPAQDGIEYAEKNG-MFFIETSAKTADNINQLFEVLIT 193
           L EKR+V  +   ++ +  G + + ETSAK A N++Q FE +  
Sbjct: 121 LEEKRQVSTKKAQQWCKSKGNIPYFETSAKEAINVDQAFETIAR 164

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24)

 Score =  140 bits (353), Expect = 5e-42
 Identities = 65/172 (37%), Positives = 102/172 (59%), Gaps = 10/172 (5%)

Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQF-DPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAG 92
           VK+V+LG   VGK+ +V R+V  +F     + T+GA+F+++ + + +   V   IWDTAG
Sbjct: 1   VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGE-RVVTLGIWDTAG 59

Query: 93  QERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLH 152
            ERY A++ +YYRGA  A+V YD+T   SF +A++WVKELQ        + L G K+DL 
Sbjct: 60  SERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNL-EEHCKIYLCGTKSDLI 118

Query: 153 EK----REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLITCTSSYCS 200
           E+    R+V   D  ++A++      ETS+KT  N+++LF+        + S
Sbjct: 119 EQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQ---KVAEDFVS 167

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score =  138 bits (350), Expect = 2e-41
 Identities = 63/181 (34%), Positives = 94/181 (51%), Gaps = 19/181 (10%)

Query: 30  KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWD 89
                K+V+LGD GVGK+ ++ R V  +F      T+G    ++TI       +K ++WD
Sbjct: 2   FMKEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTI-EPYRRNIKLQLWD 60

Query: 90  TAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKA-QYWVKELQKHGSPDIVMALVGNK 148
           TAGQE Y +L P YYRGA   ++VYD T  +S ++  + W++EL++    D+ + LVGNK
Sbjct: 61  TAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNK 120

Query: 149 ADL------------HEKREVPAQDGIEYAEKNGMF---FIETSAK--TADNINQLFEVL 191
            DL               REV        A    +     +ETSAK  T  N+N+LF+ L
Sbjct: 121 IDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKEL 180

Query: 192 I 192
           +
Sbjct: 181 L 181

Length = 219

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score =  134 bits (338), Expect = 4e-40
 Identities = 64/154 (41%), Positives = 94/154 (61%), Gaps = 1/154 (0%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           +L+L+GDSGVGK+C++ RF   +F  +   T+G  F  +TI + D   V+ +IWDTAGQE
Sbjct: 2   RLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEV-DGIKVRIQIWDTAGQE 60

Query: 95  RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
           RY  +   YYR A    +VYDI+S  S+     WV ++ ++    +   L+GNKAD  +K
Sbjct: 61  RYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQK 120

Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
           R+V  + G + A++ GM F ETSA T  NI + F
Sbjct: 121 RQVGDEQGNKLAKEYGMDFFETSACTNKNIKESF 154

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score =  133 bits (336), Expect = 6e-40
 Identities = 62/158 (39%), Positives = 95/158 (60%), Gaps = 1/158 (0%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           KL+++G+S VGK+  + R+    F      TVG  F  +T+   D   +K +IWDTAGQE
Sbjct: 3   KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRNDKR-IKLQIWDTAGQE 61

Query: 95  RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
           RY  +   YYRGA   +++YDIT+ +SFN  Q W  +++ +   +  + LVGNK D+ ++
Sbjct: 62  RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDE 121

Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
           R V A+ G + A++ G  F E SAK   N+ Q+FE L+
Sbjct: 122 RVVSAERGRQLADQLGFEFFEASAKENINVKQVFERLV 159

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score =  134 bits (338), Expect = 8e-40
 Identities = 65/155 (41%), Positives = 102/155 (65%), Gaps = 2/155 (1%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTS-KVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           K++L+GDSGVGK+C+++RF  G F   S   TVG  F ++ + + D   VK +IWDTAGQ
Sbjct: 2   KVMLVGDSGVGKTCLLVRFKDGAFLAGSFIATVGIQFTNKVVTV-DGVKVKLQIWDTAGQ 60

Query: 94  ERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE 153
           ER+ ++   YYR A   +++YD+T+  SF+  + W+ E+ ++   D+V+ L+GNKAD+  
Sbjct: 61  ERFRSVTHAYYRDAHALLLLYDVTNKSSFDNIRAWLTEILEYAQSDVVIMLLGNKADMSG 120

Query: 154 KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
           +R V  +DG   A++ G+ F+ETSAKT  N+   F
Sbjct: 121 ERVVKREDGERLAKEYGVPFMETSAKTGLNVELAF 155

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score =  132 bits (334), Expect = 2e-39
 Identities = 58/159 (36%), Positives = 94/159 (59%), Gaps = 6/159 (3%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           K++++GDS VGK+C+  RF  G+F   ++ T+G  F  +T+ + D   +K ++WDTAGQE
Sbjct: 4   KIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEI-DGERIKVQLWDTAGQE 62

Query: 95  RY-AALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLH 152
           R+  ++   YYR     V VYD+T+  SF+    W++E ++H    ++   LVGNK DL 
Sbjct: 63  RFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLR 122

Query: 153 EKREVPAQDGIEYAEKNGMFFIETSAK---TADNINQLF 188
           E+ +VP      +A+ + M   ETSAK     D++  +F
Sbjct: 123 EQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIF 161

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases

 Score =  131 bits (333), Expect = 2e-39
 Identities = 58/163 (35%), Positives = 90/163 (55%), Gaps = 11/163 (6%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQF----DPTSKVTVGASFLSQTIALQDSTTVKFEIWDT 90
           KLV+LG  GVGKS + ++F++G F    DPT    +  S+  Q     D      +I DT
Sbjct: 2   KLVVLGSGGVGKSALTIQFIQGHFVDDYDPT----IEDSYRKQIEI--DGEVCLLDILDT 55

Query: 91  AGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKA 149
           AGQE ++A+   Y R     ++VY IT   SF + + + +++ +     D+ + LVGNK 
Sbjct: 56  AGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKC 115

Query: 150 DLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
           DL  +R V  ++G E A + G  F+ETSAK   N+++ F  L+
Sbjct: 116 DLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLV 158

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164

>gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily

 Score =  131 bits (333), Expect = 3e-39
 Identities = 60/163 (36%), Positives = 88/163 (53%), Gaps = 11/163 (6%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQF----DPTSKVTVGASFLSQTIALQDSTTVKFEIWDT 90
           KLV+LG  GVGKS + ++FV+G F    DPT    +  S+  Q     D      +I DT
Sbjct: 4   KLVVLGGGGVGKSALTIQFVQGHFVDEYDPT----IEDSYRKQIEI--DGEVCLLDILDT 57

Query: 91  AGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQ-YWVKELQKHGSPDIVMALVGNKA 149
           AGQE ++A+   Y R     ++VY IT   SF +   +  + L+     D+ + LVGNK 
Sbjct: 58  AGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIAKFREQILRVKDRDDVPIVLVGNKC 117

Query: 150 DLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
           DL  +R V  ++G E A + G  F+ETSAK   N+++ F  L+
Sbjct: 118 DLENERVVSTEEGKELARQWGCPFLETSAKERINVDEAFYDLV 160

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166

>gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like

 Score =  128 bits (323), Expect = 6e-38
 Identities = 57/159 (35%), Positives = 88/159 (55%), Gaps = 2/159 (1%)

Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIAL-QDSTTVKFEIWDTAG 92
           +K++++G+  VGKS ++ RFV+G F    K T+G  FL + I L Q    V+  +WDTAG
Sbjct: 1   IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAG 60

Query: 93  QERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLH 152
           QE + A+   YYRGA   ++V+  T  +SF   + W KE  +    DI M LV  K DL 
Sbjct: 61  QEEFDAITKAYYRGAQACILVFSTTDRESFEAIESW-KEKVEAECGDIPMVLVQTKIDLL 119

Query: 153 EKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVL 191
           ++  +  ++    A++  +    TS K   N+ +LFE L
Sbjct: 120 DQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYL 158

Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score =  128 bits (325), Expect = 1e-37
 Identities = 59/169 (34%), Positives = 93/169 (55%), Gaps = 12/169 (7%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           K++++GD GVGK+ I+ R+V G F    K T+G  F  + I    +T V+ ++WD AGQE
Sbjct: 2   KVLVIGDLGVGKTSIIKRYVHGVFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQE 61

Query: 95  RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQK-----HGSPDIVMALVGNKA 149
           R+  +  +YY+GA  A++V+D+T P +F     W  +L       +G P I   L+ NK 
Sbjct: 62  RFGGMTRVYYKGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEP-IPALLLANKC 120

Query: 150 DLHEKRE-VPAQDGIEYAEKNGMFFI---ETSAKTADNINQLFEVLITC 194
           DL ++R     +   ++ ++NG  FI   ETSAK   NI +    L+  
Sbjct: 121 DLKKERLAKDPEQMDQFCKENG--FIGWFETSAKENINIEEAMRFLVKN 167

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score =  124 bits (312), Expect = 5e-36
 Identities = 64/171 (37%), Positives = 98/171 (57%), Gaps = 14/171 (8%)

Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTT---------VK 84
           +KL+ LGDSGVGK+  + R+   +F+P    TVG  F  + +                V 
Sbjct: 5   IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNSQGPDGTSGKAFRVH 64

Query: 85  FEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHG---SPDIV 141
            ++WDTAGQER+ +L   ++R A   ++++D+TS  SF   + W+ +LQ H    +PDIV
Sbjct: 65  LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNVRNWMSQLQAHAYCENPDIV 124

Query: 142 MALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
             L+GNKADL ++REV  +   E A+K G+ + ETSA T  N+ +  E L+
Sbjct: 125 --LIGNKADLPDQREVSERQARELADKYGIPYFETSAATGQNVEKAVETLL 173

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score =  124 bits (313), Expect = 5e-36
 Identities = 61/154 (39%), Positives = 97/154 (62%), Gaps = 2/154 (1%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           KL+++GDSGVGKS ++LRF    F  +   T+G  F  +T+ + +   VK +IWDTAGQE
Sbjct: 8   KLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEI-NGERVKLQIWDTAGQE 66

Query: 95  RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
           R+  +   YYRG    +VVYD+T+ +SF   + W++E++++   D+   LVGNK D  E+
Sbjct: 67  RFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQN-CDDVCKVLVGNKNDDPER 125

Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
           + V  +D  ++A + G+   ETSAK   N+ ++F
Sbjct: 126 KVVETEDAYKFAGQMGISLFETSAKENINVEEMF 159

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score =  119 bits (302), Expect = 2e-34
 Identities = 52/174 (29%), Positives = 92/174 (52%), Gaps = 20/174 (11%)

Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKV-TVGASFLSQTIALQ-DSTTVKFEIWDTA 91
           +K+V++GD  VGK+C+++ +   +F PT  V TV   F + +  +  D   V   +WDTA
Sbjct: 1   IKIVVVGDGAVGKTCLLISYTTNKF-PTEYVPTV---FDNYSANVTVDGKQVNLGLWDTA 56

Query: 92  GQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQY-WVKELQKHGSPDIVMALVGNKAD 150
           GQE Y  L PL Y    V ++ + + SP SF   +  W  E++ +  P++ + LVG K D
Sbjct: 57  GQEEYDRLRPLSYPQTDVFLLCFSVDSPSSFENVKTKWYPEIKHY-CPNVPIILVGTKID 115

Query: 151 LHEKRE-----------VPAQDGIEYAEKNG-MFFIETSAKTADNINQLFEVLI 192
           L +              +  ++G + A++ G + ++E SA T + + ++F+  I
Sbjct: 116 LRDDGNTLKKLEKKQKPITPEEGEKLAKEIGAVKYMECSALTQEGLKEVFDEAI 169

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score =  120 bits (303), Expect = 2e-34
 Identities = 65/171 (38%), Positives = 104/171 (60%), Gaps = 4/171 (2%)

Query: 23  NAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTT 82
           ++G S   +L  K++L+GDSGVGKS +++ F+    +  +  T+G  F  + + +     
Sbjct: 4   SSGQSSGYDLSFKILLIGDSGVGKSSLLVSFISSSVEDLAP-TIGVDFKIKQLTV-GGKR 61

Query: 83  VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSF-NKAQYWVKELQKHGS-PDI 140
           +K  IWDTAGQER+  L   YYR A   ++VYD+T  ++F N +  W KE++ + +  D 
Sbjct: 62  LKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDC 121

Query: 141 VMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVL 191
           V  LVGNK D   +R+V  ++G+  A+++G  F+E SAKT +N+ Q FE L
Sbjct: 122 VKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEEL 172

Length = 211

>gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional

 Score =  116 bits (291), Expect = 5e-33
 Identities = 57/132 (43%), Positives = 85/132 (64%), Gaps = 1/132 (0%)

Query: 58  FDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDIT 117
           FD   + T+G  FLS+T+ L D   V+ ++WDTAGQER+ +L P Y R +A A+VVYDIT
Sbjct: 5   FDNNYQSTIGIDFLSKTLYL-DEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDIT 63

Query: 118 SPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETS 177
           +  SF     W++++      D+++ALVGNK DL + R+V  ++G++ A++    F ETS
Sbjct: 64  NRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETS 123

Query: 178 AKTADNINQLFE 189
           AK   NI  LF+
Sbjct: 124 AKAGHNIKVLFK 135

Length = 176

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score =  116 bits (291), Expect = 9e-33
 Identities = 60/159 (37%), Positives = 96/159 (60%), Gaps = 2/159 (1%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           +++++G  GVGK+ ++ RF    F    K TVG  F  +T+ L+    ++ +IWDTAGQE
Sbjct: 2   QVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELR-GKKIRLQIWDTAGQE 60

Query: 95  RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
           R+ ++   YYR A   ++VYDIT  ++F+    W+K + K+ S D  + LVGNK D    
Sbjct: 61  RFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETD 120

Query: 155 REVPAQDGIEYAEK-NGMFFIETSAKTADNINQLFEVLI 192
           RE+  Q G ++A++  GM F E SAK   N++++F  L+
Sbjct: 121 REITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLV 159

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like

 Score =  116 bits (292), Expect = 9e-33
 Identities = 58/182 (31%), Positives = 90/182 (49%), Gaps = 22/182 (12%)

Query: 31  NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKV-TVGASFLSQTIALQDST--TVKFEI 87
           +L+VK+V++GD G GK+C+++ + +G F P   V TV   F +    LQ      ++  +
Sbjct: 1   DLKVKIVVVGDGGCGKTCLLMVYAQGSF-PEEYVPTV---FENYVTTLQVPNGKIIELAL 56

Query: 88  WDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVG 146
           WDTAGQE Y  L PL Y    V ++ Y + +P S  N    W  E+  H  P   + LVG
Sbjct: 57  WDTAGQEDYDRLRPLSYPDVDVILICYSVDNPTSLDNVEDKWYPEVN-HFCPGTPIVLVG 115

Query: 147 NKADLHEKRE------------VPAQDGIEYAEKNGMF-FIETSAKTADNINQLFEVLIT 193
            K DL + +             V  + G   A+  G   +IE SAK  +N++++F+  I 
Sbjct: 116 LKTDLRKDKNSVSKLRAQGLEPVTPEQGESVAKSIGAVAYIECSAKLMENVDEVFDAAIN 175

Query: 194 CT 195
             
Sbjct: 176 VA 177

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score =  113 bits (286), Expect = 3e-32
 Identities = 51/163 (31%), Positives = 92/163 (56%), Gaps = 6/163 (3%)

Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           +K++ +G+SGVGKSCI+ R+  G+F      T+G  +  + +++++   V+   +D +G 
Sbjct: 1   IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKE-VRVNFFDLSGH 59

Query: 94  ERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSP-----DIVMALVGNK 148
             Y  +   +Y+     ++VYD+T   SF     W+KE+++ G P     +IV+ +  NK
Sbjct: 60  PEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANK 119

Query: 149 ADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVL 191
            DL + R V   +G  +AE  G  + ETSA T + +N++F+ L
Sbjct: 120 IDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQTL 162

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9)

 Score =  109 bits (274), Expect = 2e-30
 Identities = 56/165 (33%), Positives = 90/165 (54%), Gaps = 7/165 (4%)

Query: 30  KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWD 89
           K+  +K++LLGD GVGKS ++ R+V  +FD     T+G  FL++ + + D   V  +IWD
Sbjct: 2   KSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEV-DGHFVTLQIWD 60

Query: 90  TAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPD----IVMALV 145
           TAGQER+ +L   +YRG+   ++ + +    SF     W KE   +            ++
Sbjct: 61  TAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVIL 120

Query: 146 GNKADLHEKREVPAQDGIEYAEKNGMF-FIETSAKTADNINQLFE 189
           GNK D+  +R+V  ++   +   NG + + ETSAK A N+   FE
Sbjct: 121 GNKIDI-PERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFE 164

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases

 Score =  109 bits (275), Expect = 2e-30
 Identities = 52/172 (30%), Positives = 86/172 (50%), Gaps = 19/172 (11%)

Query: 36  LVLLGDSGVGKSCIVLRFVRGQFDPTSKV-TVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           LV++GD  VGK+C+++ +    F P   V TV  ++ S  + + D   V+  +WDTAGQE
Sbjct: 1   LVVVGDGAVGKTCLLIVYTTNAF-PEDYVPTVFENY-SADVEV-DGKPVELGLWDTAGQE 57

Query: 95  RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQY-WVKELQKHGSPDIVMALVGNKADL-- 151
            Y  L PL Y    V ++ + + SP SF   +  W  E++    P++ + LVG K DL  
Sbjct: 58  DYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHF-CPNVPIILVGTKLDLRN 116

Query: 152 ----HEKREVPAQDGIEYAEKNGMF-------FIETSAKTADNINQLFEVLI 192
                E+     Q+ + Y +   +        ++E SA T + + ++FE  I
Sbjct: 117 DKSTLEELSKKKQEPVTYEQGQALAKRIGAVKYLECSALTQEGVREVFEEAI 168

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174

>gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28)

 Score =  110 bits (276), Expect = 2e-30
 Identities = 57/158 (36%), Positives = 83/158 (52%), Gaps = 3/158 (1%)

Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           +K+V+LGD   GK+ ++ RF +  F  + K T+G  F S+ I L  S  V  ++WD  GQ
Sbjct: 1   IKIVVLGDGASGKTSLIRRFAQEGFGKSYKQTIGLDFFSRRITLPGSLNVTLQVWDIGGQ 60

Query: 94  ERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYW---VKELQKHGSPDIVMALVGNKAD 150
           +    +   Y  GA    +VYDIT+  SF   + W   VK++ +       M LVGNK D
Sbjct: 61  QIGGKMLDKYIYGAQAVCLVYDITNSQSFENLEDWLSVVKKVNEESETKPKMVLVGNKTD 120

Query: 151 LHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
           L   R+V A+    +A++N M  I  SAKT D +   F
Sbjct: 121 LEHNRQVTAEKHARFAQENDMESIFVSAKTGDRVFLCF 158

Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213

>gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases

 Score =  107 bits (270), Expect = 6e-30
 Identities = 49/158 (31%), Positives = 83/158 (52%), Gaps = 4/158 (2%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           KLVL+GD G GK+  V R + G+F+     T+G   +       +   ++F +WDTAGQE
Sbjct: 2   KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE-VHPLDFHTNRGKIRFNVWDTAGQE 60

Query: 95  RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
           ++  L   YY     A++++D+TS  ++     W ++L +    +I + L GNK D+ ++
Sbjct: 61  KFGGLRDGYYIQGQCAIIMFDVTSRVTYKNVPNWHRDLVRV-CENIPIVLCGNKVDIKDR 119

Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
           +  P Q  I +  K  + + E SAK+  N  + F  L 
Sbjct: 120 KVKPKQ--ITFHRKKNLQYYEISAKSNYNFEKPFLWLA 155

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score =  107 bits (268), Expect = 1e-29
 Identities = 52/160 (32%), Positives = 81/160 (50%), Gaps = 5/160 (3%)

Query: 33  RVKLVLLGDSGVGKSCIVLRFVRGQFDPTS-KVTVGASFLSQTIALQDSTTVKFEIWDTA 91
            +K+V++GD  VGKS ++ R +  +   T  K     ++++  I  +D  T KF + DTA
Sbjct: 1   EIKIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIE-EDGKTYKFNLLDTA 59

Query: 92  GQERYAALAPLYYRGAAVAVVVYDITSP--DSFNKAQYWVKELQKHGSPDIVMALVGNKA 149
           GQE Y A+  LYYR    ++ V+DI     D     +   KE+  H    + + LVGNK 
Sbjct: 60  GQEDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESGVPIILVGNKI 119

Query: 150 DLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFE 189
           DL    ++       +A+ NG   I  SA+T  NI+  F+
Sbjct: 120 DL-RDAKLKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFK 158

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase

 Score =  106 bits (266), Expect = 5e-29
 Identities = 62/165 (37%), Positives = 91/165 (55%), Gaps = 15/165 (9%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQF----DPTSKVTVGASFLSQTIAL--QDSTTVKFEIW 88
           K+ +LG   VGKS + ++FV G F     PT + T      S+ I    Q+      EI 
Sbjct: 3   KIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENT-----FSKIITYKGQEYHL---EIV 54

Query: 89  DTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQY-WVKELQKHGSPDIVMALVGN 147
           DTAGQ+ Y+ L   Y  G    ++VY +TS  SF   +  + K L   G   + + LVGN
Sbjct: 55  DTAGQDEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGN 114

Query: 148 KADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
           K+DLH +R+V A++G + AE  G  F+E+SAK  +N+ + FE+LI
Sbjct: 115 KSDLHMERQVSAEEGKKLAESWGAAFLESSAKENENVEEAFELLI 159

Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180

>gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms

 Score =  105 bits (264), Expect = 5e-29
 Identities = 61/159 (38%), Positives = 89/159 (55%), Gaps = 3/159 (1%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           KLV+LG  GVGKS + ++FV+G F      T+  S+  Q     D      EI DTAG E
Sbjct: 3   KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEV--DGQQCMLEILDTAGTE 60

Query: 95  RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKE-LQKHGSPDIVMALVGNKADLHE 153
           ++ A+  LY +     V+VY IT+  +FN  Q   ++ L+   + D+ M LVGNK DL +
Sbjct: 61  QFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 120

Query: 154 KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
           +R V  + G   A + G  F+ETSAK   N+N++F  L+
Sbjct: 121 ERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLV 159

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206662 cd01870, RhoA_like, Ras homology family A (RhoA)-like includes RhoA, RhoB and RhoC

 Score =  105 bits (264), Expect = 6e-29
 Identities = 63/171 (36%), Positives = 91/171 (53%), Gaps = 17/171 (9%)

Query: 33  RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAG 92
           R KLV++GD   GK+C+++ F + QF      TV  ++++      D   V+  +WDTAG
Sbjct: 1   RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEV--DGKQVELALWDTAG 58

Query: 93  QERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQY-WVKELQKHGSPDIVMALVGNKADL 151
           QE Y  L PL Y    V ++ + I SPDS       W  E+ KH  P++ + LVGNK DL
Sbjct: 59  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDL 117

Query: 152 ----HEKRE--------VPAQDGIEYAEKNGMF-FIETSAKTADNINQLFE 189
               H  RE        V  ++G   AEK G F ++E SAKT + + ++FE
Sbjct: 118 RNDEHTIRELAKMKQEPVKPEEGRAMAEKIGAFGYLECSAKTKEGVREVFE 168

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranylgeranylated forms; however, RhoB can be present in palmitoylated, farnesylated, and geranylgeranylated forms. RhoA and RhoC are highly relevant for tumor progression and invasiveness; however, RhoB has recently been suggested to be a tumor suppressor. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

 Score =  105 bits (264), Expect = 8e-29
 Identities = 59/155 (38%), Positives = 86/155 (55%), Gaps = 2/155 (1%)

Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           +K +L+GDS VGK  I+     G  +      +G  + + TI L D   VK ++WDT+GQ
Sbjct: 7   LKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILL-DGRRVKLQLWDTSGQ 65

Query: 94  ERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE 153
            R+  +   Y RGA   ++VYDIT+  SF+    W+KE+ +H +P +   LVGN+  L  
Sbjct: 66  GRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEH-APGVPKILVGNRLHLAF 124

Query: 154 KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
           KR+V  +    YAE+NGM F E S     NI + F
Sbjct: 125 KRQVATEQAQAYAERNGMTFFEVSPLCNFNITESF 159

The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score =  104 bits (262), Expect = 9e-29
 Identities = 54/166 (32%), Positives = 80/166 (48%), Gaps = 14/166 (8%)

Query: 37  VLLGDSGVGKSCIVLRFVRGQFDPTSKV---TVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           V++G  GVGKS ++   + G+    S V   T       + +   D   VK  + DT G 
Sbjct: 1   VVVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVYVKEL---DKGKVKLVLVDTPGL 57

Query: 94  ERY-----AALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNK 148
           + +       LA L  RGA + ++V D T  +S   A+     L++     I + LVGNK
Sbjct: 58  DEFGGLGREELARLLLRGADLILLVVDSTDRESEEDAKL--LILRRLRKEGIPIILVGNK 115

Query: 149 ADLHEKREVPAQD-GIEYAEKNGMFFIETSAKTADNINQLFEVLIT 193
            DL E+REV       E A+  G+   E SAKT + +++LFE LI 
Sbjct: 116 IDLLEEREVEELLRLEELAKILGVPVFEVSAKTGEGVDELFEKLIE 161

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1

 Score =  103 bits (258), Expect = 4e-28
 Identities = 60/160 (37%), Positives = 92/160 (57%), Gaps = 4/160 (2%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           KLV+LG  GVGKS + ++FV+G F      T+  S+  + I + D      EI DTAG E
Sbjct: 3   KLVVLGSGGVGKSALTVQFVQGIFVDKYDPTIEDSY-RKQIEV-DCQQCMLEILDTAGTE 60

Query: 95  RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKE-LQKHGSPDIVMALVGNKADLHE 153
           ++ A+  LY +      +VY IT+  SFN  Q   ++ L+   + D+ M LVGNK DL +
Sbjct: 61  QFTAMRDLYIKNGQGFALVYSITAQQSFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 120

Query: 154 KREVPAQDGIEYAEKNGMF-FIETSAKTADNINQLFEVLI 192
           +R V  ++G   A + G   F+ETSAK+  N++++F  L+
Sbjct: 121 ERVVSKEEGQNLARQWGNCPFLETSAKSKINVDEIFYDLV 160

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3

 Score =  102 bits (257), Expect = 5e-28
 Identities = 53/159 (33%), Positives = 87/159 (54%), Gaps = 3/159 (1%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           KLV++G  GVGKS + ++F++  F      T+  S+  Q     D    + +I DTAGQE
Sbjct: 4   KLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEI--DGQWARLDILDTAGQE 61

Query: 95  RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKE-LQKHGSPDIVMALVGNKADLHE 153
            ++A+   Y R     ++V+ +T   SF +   +  + L+     +  M LVGNKADL  
Sbjct: 62  EFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEH 121

Query: 154 KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
           +R+V  ++G E A +  + +IETSAK   N+++ F  L+
Sbjct: 122 QRQVSREEGQELARQLKIPYIETSAKDRVNVDKAFHDLV 160

The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases)

 Score =  103 bits (258), Expect = 7e-28
 Identities = 56/161 (34%), Positives = 87/161 (54%), Gaps = 5/161 (3%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           KLV+LGD GVGK+ + ++     F  T   T+  S+  Q +   D      E+ DTAGQE
Sbjct: 1   KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVV--DGQPCMLEVLDTAGQE 58

Query: 95  RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQK---HGSPDIVMALVGNKADL 151
            Y AL   + R     ++VY ITS  +F + + + +++Q+     + D+ + +VGNK D 
Sbjct: 59  EYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDK 118

Query: 152 HEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
             +REV  ++G   A + G  FIE SAKT  N+ + F  L+
Sbjct: 119 VYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLV 159

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190

>gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B

 Score =  101 bits (254), Expect = 1e-27
 Identities = 58/163 (35%), Positives = 84/163 (51%), Gaps = 12/163 (7%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQF----DPTSKVTVGASFLSQTIALQDSTTVKFEIWDT 90
           KLV++G  GVGKS + ++ ++  F    DPT    +  S+  Q +   D  T   +I DT
Sbjct: 3   KLVVVGAGGVGKSALTIQLIQNHFVDEYDPT----IEDSYRKQVVI--DGETCLLDILDT 56

Query: 91  AGQERYAALAPLYYRGAAVAVVVYDITSPDSFNK-AQYWVKELQKHGSPDIVMALVGNKA 149
           AGQE Y+A+   Y R     + V+ I S  SF     Y  +  +   S D+ M LVGNK 
Sbjct: 57  AGQEEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKC 116

Query: 150 DLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
           DL   R V  + G + A+  G+ +IETSAKT   + + F  L+
Sbjct: 117 DL-AARTVSTRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLV 158

H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase

 Score =  101 bits (253), Expect = 2e-27
 Identities = 58/166 (34%), Positives = 94/166 (56%), Gaps = 7/166 (4%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           K+V+LG  GVGKS + ++FV+  F  +   T+  S+  Q + + D      EI DTAG E
Sbjct: 3   KIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQ-VEI-DGRQCDLEILDTAGTE 60

Query: 95  RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKE-LQKHGSPDIVMALVGNKADLHE 153
           ++ A+  LY +     ++VY +TS  S N+     ++ L+   S ++ M LVGNKADL +
Sbjct: 61  QFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLED 120

Query: 154 KREVPAQDGIEYAEKNGMF-FIETSAKTADNINQLFEVL---ITCT 195
            R+V  +DG+  +++ G   F ETSA+   N++++F  L   I C 
Sbjct: 121 DRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLVRQIICV 166

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168

>gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2)

 Score =  101 bits (252), Expect = 2e-27
 Identities = 54/165 (32%), Positives = 84/165 (50%), Gaps = 5/165 (3%)

Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           VK++LLGDS VGKS +V RF+   ++P    T   +      A  +  T+  + WDTAGQ
Sbjct: 1   VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHN-AKFEGKTILVDFWDTAGQ 59

Query: 94  ERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE 153
           ER+  +   YY  A   ++V+D+T   ++     W +EL+++  P+I   +V NK DL  
Sbjct: 60  ERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREY-RPEIPCIVVANKIDLDP 118

Query: 154 KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLITCTSSY 198
                 Q    +AEK+ +     SA    N+ +LF+  I    SY
Sbjct: 119 S---VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKLAVSY 160

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score =  100 bits (252), Expect = 3e-27
 Identities = 56/160 (35%), Positives = 95/160 (59%), Gaps = 3/160 (1%)

Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
            K++++G  GVGKS + L+F+  +F    + T   S+  + + L D   V+  I DTAGQ
Sbjct: 1   HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVL-DGEEVQLNILDTAGQ 58

Query: 94  ERYAALAPLYYRGAAVAVVVYDITSPDSFNK-AQYWVKELQKHGSPDIVMALVGNKADLH 152
           E YAA+   Y+R     ++V+ IT  +SF   A++  + L+     ++ + LVGNK DL 
Sbjct: 59  EDYAAIRDNYFRSGEGFLLVFSITDMESFTALAEFREQILRVKEDDNVPLLLVGNKCDLE 118

Query: 153 EKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
           +KR+V  ++    AE+ G+ ++ETSAKT  N++++F  L+
Sbjct: 119 DKRQVSVEEAANLAEQWGVNYVETSAKTRANVDKVFFDLV 158

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family

 Score = 97.0 bits (242), Expect = 8e-26
 Identities = 35/162 (21%), Positives = 70/162 (43%), Gaps = 1/162 (0%)

Query: 33  RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAG 92
             KL+L+G  GVGK+ +  + +  +FD     T G +     I   +   ++  +WD  G
Sbjct: 1   EAKLMLVGQGGVGKTSLCKQLIGEKFDGDESSTHGINVQDWKIPAPERKKIRLNVWDFGG 60

Query: 93  QERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLH 152
           QE Y A    +    ++ ++V+D+ + D  ++  YW+++++  G    V+ LVG   D  
Sbjct: 61  QEIYHATHQFFLTSRSLYLLVFDLRTGDEVSRVPYWLRQIKAFGGVSPVI-LVGTHIDES 119

Query: 153 EKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLITC 194
              ++  +   +            S K    I +L + +   
Sbjct: 120 CDEDILKKALNKKFPAIINDIHFVSCKNGKGIAELKKAIAKE 161

RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161

>gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c

 Score = 97.2 bits (242), Expect = 8e-26
 Identities = 58/159 (36%), Positives = 90/159 (56%), Gaps = 11/159 (6%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQF----DPTSKVTVGASFLSQTIALQDSTTVKFEIWDT 90
           K+V+LG  GVGKS + ++FV G F    DPT +      F  + I +  S +V  EI DT
Sbjct: 3   KVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-----DFYRKEIEVDSSPSV-LEILDT 56

Query: 91  AGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKA 149
           AG E++A++  LY +     +VVY + +  +F   +    ++ +  G   + + LVGNK 
Sbjct: 57  AGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKV 116

Query: 150 DLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
           DL  +REV + +G   AE+ G  F+ETSAK+   +N+LF
Sbjct: 117 DLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELF 155

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional

 Score = 98.0 bits (244), Expect = 9e-26
 Identities = 59/159 (37%), Positives = 89/159 (55%), Gaps = 3/159 (1%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           KLV++G  GVGKS + ++F++  F      T+  S+  Q +   D  T   +I DTAGQE
Sbjct: 7   KLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVI--DEETCLLDILDTAGQE 64

Query: 95  RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIV-MALVGNKADLHE 153
            Y+A+   Y R     + VY ITS  SF +   + +++ +    D V M LVGNK DL  
Sbjct: 65  EYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDS 124

Query: 154 KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
           +R+V   +G E A+  G+ F+ETSAK   N+++ F  L+
Sbjct: 125 ERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYELV 163

Length = 189

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score = 96.9 bits (241), Expect = 1e-25
 Identities = 51/157 (32%), Positives = 84/157 (53%), Gaps = 4/157 (2%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           K++++GD  VGK+C++ RF +  FD   K T+G  F  +   +        ++WDTAGQE
Sbjct: 2   KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEVL-GVPFSLQLWDTAGQE 60

Query: 95  RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSP-DIVMALVGNKADLH- 152
           R+  +A  YYRGA   ++V+D+T   S    + W+++  K   P  +++ LVG K DL  
Sbjct: 61  RFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSS 120

Query: 153 -EKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
             +  +  QD I+ A +    +   SA T +N+   F
Sbjct: 121 PAQYALMEQDAIKLAREMKAEYWAVSALTGENVRDFF 157

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4)

 Score = 94.5 bits (235), Expect = 9e-25
 Identities = 54/162 (33%), Positives = 81/162 (50%), Gaps = 6/162 (3%)

Query: 35  KLVLLGDSGVGKSCIVLRFVR--GQFDPTSKVTVGASFLSQTIAL-QDSTTVKFEIWDTA 91
           +  ++GD  VGKS +V  F      F     +T G   + +T+ +   S +V+  I+D+A
Sbjct: 2   QCAVVGDPAVGKSALVQMFHSDGATFQKNYTMTTGCDLVVKTVPVPDTSDSVELFIFDSA 61

Query: 92  GQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMA--LVGNKA 149
           GQE ++ +    +   AV  VVYD+T+  SFN    W+  ++ H S  +     LVGNK 
Sbjct: 62  GQELFSDMVENVWEQPAVVCVVYDVTNEVSFNNCSRWINRVRTH-SHGLHTPGVLVGNKC 120

Query: 150 DLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVL 191
           DL ++REV A      A+ N + F ETSAK        F  L
Sbjct: 121 DLTDRREVDAAQAQALAQANTLKFYETSAKEGVGYEAPFLSL 162

RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167

>gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20)

 Score = 93.4 bits (232), Expect = 9e-24
 Identities = 59/192 (30%), Positives = 92/192 (47%), Gaps = 41/192 (21%)

Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           +K+VLLGD  VGK+ ++ R++  +F  T   TVG +F      L+        IWDTAG+
Sbjct: 1   LKVVLLGDMNVGKTSLLHRYMERRFKDTVS-TVGGAFY-----LKQWGPYNISIWDTAGR 54

Query: 94  ERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE 153
           E++  L  +Y RGAA  ++ YD+++  S  + +     L    + D + A+VGNK DL E
Sbjct: 55  EQFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTE 114

Query: 154 -------------------KREVPAQDGIEYAEK---------------NGMFFIETSAK 179
                              +R+V  +D   + ++                 M F ETSAK
Sbjct: 115 EGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCF-ETSAK 173

Query: 180 TADNINQLFEVL 191
           T  N+++LFE L
Sbjct: 174 TGYNVDELFEYL 185

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220

>gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional

 Score = 93.2 bits (232), Expect = 1e-23
 Identities = 50/155 (32%), Positives = 83/155 (53%), Gaps = 8/155 (5%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           KL+L+GD GVGK+  V R + G+F+     T+G   +       +   + F +WDTAGQE
Sbjct: 11  KLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVE-VHPLKFYTNCGPICFNVWDTAGQE 69

Query: 95  RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
           ++  L   YY     A++++D+TS  ++     W +++ +     I + LVGNK D+ + 
Sbjct: 70  KFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCEN-IPIVLVGNKVDVKD- 127

Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFE 189
           R+V A+  I +  K  + + + SAK   N N  FE
Sbjct: 128 RQVKARQ-ITFHRKKNLQYYDISAK--SNYN--FE 157

Length = 215

>gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1)

 Score = 92.1 bits (229), Expect = 1e-23
 Identities = 47/167 (28%), Positives = 91/167 (54%), Gaps = 13/167 (7%)

Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           +K+ LLGD+ +GK+ +++++V G+FD     T+G +F+ +TI+++  T + F IWD  GQ
Sbjct: 1   LKIGLLGDAQIGKTSLMVKYVEGEFDEEYIQTLGVNFMEKTISIRG-TEITFSIWDLGGQ 59

Query: 94  ERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADL-- 151
             +  + PL  + A   + ++D+T   + N  + W ++ +      I + LVG K DL  
Sbjct: 60  REFINMLPLVCKDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIPI-LVGTKYDLFA 118

Query: 152 ----HEKREVPAQDGIEYAE--KNGMFFIETSAKTADNINQLFEVLI 192
                E+ E+  Q   +YA+  K  + F   S   + N+ ++F+ ++
Sbjct: 119 DLPPEEQEEITKQ-ARKYAKAMKAPLIF--CSTSHSINVQKIFKFVL 162

Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182

>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

 Score = 90.0 bits (224), Expect = 5e-23
 Identities = 54/168 (32%), Positives = 82/168 (48%), Gaps = 17/168 (10%)

Query: 35  KLVLLGDSGVGKSCIVLRFVR----GQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDT 90
           K+ +LG SGVGKS + +RF+     G+++P  +      +  Q     D   V  EI DT
Sbjct: 1   KIAVLGASGVGKSALTVRFLTKRFIGEYEPNLESL----YSRQVTI--DGEQVSLEIQDT 54

Query: 91  AGQERYAALAPL--YYRGAAVAVVVYDITSPDSFNKAQ---YWVKELQKHGSPDIVMALV 145
            GQ++      L    R A   V+VY IT   SF+        ++E++K    +I + LV
Sbjct: 55  PGQQQNEDPESLERSLRWADGFVLVYSITDRSSFDVVSQLLQLIREIKKRDG-EIPVILV 113

Query: 146 GNKADLHEKREVPAQDGIEYAEKNGMFFIETSA-KTADNINQLFEVLI 192
           GNKADL   R+V  ++G + A + G  F E SA +    +  +F  L 
Sbjct: 114 GNKADLLHSRQVSTEEGQKLALELGCLFFEVSAAENYLEVQNVFHELC 161

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166

>gnl|CDD|206705 cd04133, Rop_like, Rho-related protein from plants (Rop)-like

 Score = 89.5 bits (222), Expect = 1e-22
 Identities = 56/171 (32%), Positives = 89/171 (52%), Gaps = 15/171 (8%)

Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           +K V +GD  VGK+C+++ +    F      TV  +F +  +   D  TV   +WDTAGQ
Sbjct: 2   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV--DGNTVNLGLWDTAGQ 59

Query: 94  ERYAALAPLYYRGAAVAVVVYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLH 152
           E Y  L PL YRGA V ++ + + S  S+ N  + W+ EL +H +P + + LVG K DL 
Sbjct: 60  EDYNRLRPLSYRGADVFLLAFSLISKASYENVLKKWIPEL-RHYAPGVPIVLVGTKLDLR 118

Query: 153 EKRE----------VPAQDGIEYAEKNGM-FFIETSAKTADNINQLFEVLI 192
           + ++          +    G E  ++ G   +IE S+KT  N+  +F+  I
Sbjct: 119 DDKQFFADHPGAVPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDAAI 169

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, Rop1, Rop3, and Rop5 are all involved in pollen-tube growth; Rop2 plays a role in response to low-oxygen environments, cell-morphology, and root-hair development; root-hair development is also regulated by Rop4 and Rop6; Rop6 is also responsible for ABA response, and ABA response is also regulated by Rop10. Plants retain some of the regulatory mechanisms that are shared by other members of the Rho family, but have also developed a number of unique modes for regulating Rops. Unique RhoGEFs have been identified that are exclusively active toward Rop proteins, such as those containing the domain PRONE (plant-specific Rop nucleotide exchanger). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric)

 Score = 89.1 bits (221), Expect = 1e-22
 Identities = 53/160 (33%), Positives = 83/160 (51%), Gaps = 5/160 (3%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           K+V+LG  GVGKS + ++F+   F      T+  ++  +T A  D+     +I DTAGQ 
Sbjct: 4   KIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY--KTQARIDNEPALLDILDTAGQA 61

Query: 95  RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKEL--QKHGSPDIVMALVGNKADLH 152
            + A+   Y R     ++ Y +T   SF +A  + KEL  +   + DI + LVGNK DL 
Sbjct: 62  EFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEF-KELITRVRLTEDIPLVLVGNKVDLE 120

Query: 153 EKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
           ++R+V  ++G   A +    F ETSA     I+  F  L+
Sbjct: 121 QQRQVTTEEGRNLAREFNCPFFETSAALRFYIDDAFHGLV 160

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172

>gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional

 Score = 89.0 bits (221), Expect = 4e-22
 Identities = 46/158 (29%), Positives = 81/158 (51%), Gaps = 12/158 (7%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTT----VKFEIWDT 90
           KLV++GD G GK+  V R + G+F+   + T+G       +   D  T    ++F  WDT
Sbjct: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVE-----VHPLDFFTNCGKIRFYCWDT 69

Query: 91  AGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKAD 150
           AGQE++  L   YY     A++++D+T+  ++     W ++L +    +I + L GNK D
Sbjct: 70  AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVD 128

Query: 151 LHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
           +  ++    Q  + +  K  + + E SAK+  N  + F
Sbjct: 129 VKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPF 164

Length = 219

>gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI)

 Score = 87.6 bits (217), Expect = 5e-22
 Identities = 55/161 (34%), Positives = 84/161 (52%), Gaps = 5/161 (3%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           ++V+ G  GVGKS +VLRFV+G F  +   T+  ++  Q I+    +    +I DT G  
Sbjct: 3   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISC-SKSICTLQITDTTGSH 60

Query: 95  RYAALAPLYYRGAAVAVVVYDITSPDSFN--KAQY-WVKELQKHGSPDIVMALVGNKADL 151
           ++ A+  L        ++VY ITS  S    K  Y  + E++ +    I + LVGNK D 
Sbjct: 61  QFPAMQRLSISKGHAFILVYSITSKQSLEELKPIYELICEIKGNNLEKIPIMLVGNKCDE 120

Query: 152 HEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
              REV + +G   A      F+ETSAKT  N+ +LF+ L+
Sbjct: 121 SPSREVSSSEGAALARTWNCAFMETSAKTNHNVQELFQELL 161

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42

 Score = 87.1 bits (216), Expect = 9e-22
 Identities = 51/173 (29%), Positives = 86/173 (49%), Gaps = 17/173 (9%)

Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           +K VL+GD  VGK+ +++ +    +      T   +F      L D   V+ ++ DTAGQ
Sbjct: 1   LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVV--LVDGKPVRLQLCDTAGQ 58

Query: 94  ERYAALAPLYYRGAAVAVVVYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADL- 151
           + +  L PL Y    V ++ + + +P SF N ++ W+ E++KH +P   + LVG +ADL 
Sbjct: 59  DEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKH-NPKAPIILVGTQADLR 117

Query: 152 -----------HEKREVPAQDGIEYAEKNGMF-FIETSAKTADNINQLFEVLI 192
                      + ++ V        AEK G   +IE SA T  N+ ++F+  I
Sbjct: 118 TDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVFDTAI 170

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases)

 Score = 86.8 bits (215), Expect = 2e-21
 Identities = 54/170 (31%), Positives = 88/170 (51%), Gaps = 15/170 (8%)

Query: 33  RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAG 92
           R KLV++GD   GK+ ++  F  G+F      TV  ++++    + D   V+  +WDTAG
Sbjct: 1   RRKLVIVGDGACGKTSLLYVFTLGEFPEEYHPTVFENYVTD-CRV-DGKPVQLALWDTAG 58

Query: 93  QERYAALAPLYYRGAAVAVVVYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADL 151
           QE Y  L PL Y  A V ++ + I +PDS  N    W++E++++  P++ + LVG K DL
Sbjct: 59  QEEYERLRPLSYSKAHVILIGFAIDTPDSLENVRTKWIEEVRRY-CPNVPVILVGLKKDL 117

Query: 152 HEK----------REVPAQDGIEYAEKNGM-FFIETSAKTADNINQLFEV 190
            ++            VP Q     A   G   ++E SA T + ++ +FE 
Sbjct: 118 RQEAVAKGNYATDEFVPIQQAKLVARAIGAKKYMECSALTGEGVDDVFEA 167

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190

>gnl|CDD|206663 cd01871, Rac1_like, Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)-like consists of Rac1, Rac2 and Rac3

 Score = 80.6 bits (199), Expect = 3e-19
 Identities = 50/173 (28%), Positives = 82/173 (47%), Gaps = 17/173 (9%)

Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           +K V++GD  VGK+C+++ +    F      TV  ++ +  +   D   V   +WDTAGQ
Sbjct: 2   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV--DGKPVNLGLWDTAGQ 59

Query: 94  ERYAALAPLYYRGAAVAVVVYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLH 152
           E Y  L PL Y    V ++ + + SP SF N    W  E++ H  P+  + LVG K DL 
Sbjct: 60  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHH-CPNTPIILVGTKLDLR 118

Query: 153 EKRE------------VPAQDGIEYA-EKNGMFFIETSAKTADNINQLFEVLI 192
           + ++            +    G+  A E   + ++E SA T   +  +F+  I
Sbjct: 119 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 171

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleotide association and is more efficiently activated by the RacGEF Tiam1. Both Rac1 and Rac3 have been implicated in the regulation of cell migration and invasion in human metastatic breast cancer. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 78.2 bits (193), Expect = 4e-19
 Identities = 38/117 (32%), Positives = 59/117 (50%), Gaps = 5/117 (4%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           K+V++GD G GKS ++ + V G+F P      G +    T+   D  T    IWD  G+E
Sbjct: 1   KVVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTL-EVDGDTGLLNIWDFGGRE 59

Query: 95  RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQ---YWVKELQKHGSPDIVMALVGNK 148
                  ++ + A   ++VYD+T  +S N+      W+  L+K G   I + LVGNK
Sbjct: 60  ELKFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNLRKLGG-KIPVILVGNK 115

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|133277 cd01875, RhoG, Ras homolog family, member G (RhoG) of small guanosine triphosphatases (GTPases)

 Score = 79.7 bits (196), Expect = 9e-19
 Identities = 50/169 (29%), Positives = 81/169 (47%), Gaps = 17/169 (10%)

Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           +K V++GD  VGK+C+++ +    F      TV  ++ +QT    D  TV   +WDTAGQ
Sbjct: 4   IKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAV--DGRTVSLNLWDTAGQ 61

Query: 94  ERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQY-WVKELQKHGSPDIVMALVGNKADLH 152
           E Y  L  L Y    V ++ + I SP S+   ++ W  E+  H  P++ + LVG K DL 
Sbjct: 62  EEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHH-CPNVPILLVGTKKDLR 120

Query: 153 EKREV-------------PAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
              +              P Q G    + + + ++E SA   D + ++F
Sbjct: 121 NDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVF 169

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 191

>gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases

 Score = 79.8 bits (197), Expect = 1e-18
 Identities = 55/158 (34%), Positives = 83/158 (52%), Gaps = 6/158 (3%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIA--LQDSTTVKFEIWDTAG 92
           ++VLLGDSGVGKS +   F  G ++ ++    G     +T++   +++T V ++ W+   
Sbjct: 2   RVVLLGDSGVGKSSLANIFTAGVYEDSAYEASGDDTYERTVSVDGEEATLVVYDHWE--- 58

Query: 93  QERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKEL-QKHGSPDIVMALVGNKADL 151
           QE    L     +     V+VY +T   SF KA     +L +   + DI + LVGNK+DL
Sbjct: 59  QEDGMWLEDSCMQVGDAYVIVYSVTDRSSFEKASELRIQLRRARQAEDIPIILVGNKSDL 118

Query: 152 HEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFE 189
              REV  Q+G   A      FIETSA    N+++LFE
Sbjct: 119 VRSREVSVQEGRACAVVFDCKFIETSAALQHNVDELFE 156

RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219

>gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family

 Score = 78.0 bits (192), Expect = 4e-18
 Identities = 48/162 (29%), Positives = 82/162 (50%), Gaps = 8/162 (4%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           +LV +G +GVGK+ ++ RF+   F+P  + TV    L           V  +I DT+G  
Sbjct: 1   RLVFMGAAGVGKTALIQRFLYDTFEPKHRRTVEE--LHSKEYEVAGVKVTIDILDTSGSY 58

Query: 95  RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKE-LQKHGSPDIVMALVGNKADLHE 153
            + A+  L  +      +VY +  P+SF + +   +E L+      + + +VGNK D   
Sbjct: 59  SFPAMRKLSIQNGDAFALVYSVDDPESFEEVKRLREEILEVKEDKFVPIVVVGNKIDSLA 118

Query: 154 KREVPAQDGIEYAE---KNGMFFIETSAKTADNINQLFEVLI 192
           +R+V A D +   E    NG  F+E SAK  +N+ ++F+ L+
Sbjct: 119 ERQVEAADALSTVELDWNNG--FVEASAKDNENVTEVFKELL 158

Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197

>gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8

 Score = 77.5 bits (191), Expect = 4e-18
 Identities = 50/174 (28%), Positives = 91/174 (52%), Gaps = 20/174 (11%)

Query: 33  RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQ-DSTTVKFEIWDTA 91
           R K+VL+GDS  GK+ ++  F +  F      TV   F + T + + D   ++  +WDT+
Sbjct: 1   RCKIVLVGDSQCGKTALLQVFAKDSFPENYVPTV---FENYTASFEVDKQRIELSLWDTS 57

Query: 92  GQERYAALAPLYYRGAAVAVVVYDITSPDSFNKA-QYWVKELQKHGSPDIVMALVGNKAD 150
           G   Y  + PL Y  +   ++ +DI+ P++ +   + W  E+++   P+  + LVG K+D
Sbjct: 58  GSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEVREFC-PNTPVLLVGCKSD 116

Query: 151 LH----------EKREVPA--QDGIEYAEKNG-MFFIETSAKTADN-INQLFEV 190
           L            KR++P   + G   A++ G   ++E SAKT++N +  +FE+
Sbjct: 117 LRTDLSTLTELSNKRQIPVSHEQGRNLAKQIGAAAYVECSAKTSENSVRDVFEM 170

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176

>gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases)

 Score = 77.2 bits (190), Expect = 6e-18
 Identities = 50/164 (30%), Positives = 81/164 (49%), Gaps = 13/164 (7%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           K+V+LGD   GK+ ++  F RG F    + TV  +++       D   V+  +WDTAGQE
Sbjct: 2   KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYIH--DIFVDGLAVELSLWDTAGQE 59

Query: 95  RYAALAPLYYRGAAVAVVVYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLHE 153
            +  L  L Y    V ++ + + +PDS  N    W+ E++ H  P + + LV  K DL E
Sbjct: 60  EFDRLRSLSYADTHVIMLCFSVDNPDSLENVESKWLAEIRHH-CPGVKLVLVALKCDLRE 118

Query: 154 KREVPA--------QDGIEYAEK-NGMFFIETSAKTADNINQLF 188
            R            ++G+  A++ N   ++E SAK    +N+ F
Sbjct: 119 PRNERDRGTHTISYEEGLAVAKRINACRYLECSAKLNRGVNEAF 162

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185

>gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

 Score = 76.6 bits (188), Expect = 2e-17
 Identities = 43/150 (28%), Positives = 80/150 (53%), Gaps = 4/150 (2%)

Query: 39  LGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAA 98
           +GD G GK+  V R + G+F+     T+G   +   +   +   ++F +WDTAGQE++  
Sbjct: 1   VGDGGTGKTTFVKRHLTGEFEKKYVATLGVE-VHPLVFHTNRGPIRFNVWDTAGQEKFGG 59

Query: 99  LAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVP 158
           L   YY     A++++D+T+  ++     W ++L +    +I + L GNK D+ + R+V 
Sbjct: 60  LRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRV-CENIPIVLCGNKVDVKD-RKVK 117

Query: 159 AQDGIEYAEKNGMFFIETSAKTADNINQLF 188
           A+  I +  K  + + + SAK+  N  + F
Sbjct: 118 AKS-ITFHRKKNLQYYDISAKSNYNFEKPF 146

Ran is involved in the active transport of proteins through nuclear pores. Length = 200

>gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1)

 Score = 73.2 bits (180), Expect = 6e-16
 Identities = 43/173 (24%), Positives = 81/173 (46%), Gaps = 20/173 (11%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFD----PTSKVTVGASFLSQTIALQDSTTVKFEIWDT 90
           ++V+LG S VGK+ IV RF+ G+F+    PT +      F  +  +++     + +I DT
Sbjct: 2   RMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-----DFHRKLYSIRGE-VYQLDILDT 55

Query: 91  AGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKEL---------QKHGSPDIV 141
           +G   + A+  L      V ++V+ + + +SF +     +++         +   +  I 
Sbjct: 56  SGNHPFPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIP 115

Query: 142 MALVGNKADLHEKREVPAQDGIEY-AEKNGMFFIETSAKTADNINQLFEVLIT 193
           M + GNKAD    REV   +  +         + E SAK   N++++F  L +
Sbjct: 116 MVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRALFS 168

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247

>gnl|CDD|206664 cd01874, Cdc42, cell division cycle 42 (Cdc42) is a small GTPase of the Rho family

 Score = 69.5 bits (170), Expect = 5e-15
 Identities = 48/175 (27%), Positives = 83/175 (47%), Gaps = 17/175 (9%)

Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           +K V++GD  VGK+C+++ +   +F      TV  ++    +   +  T+   ++DTAGQ
Sbjct: 2   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLG--LFDTAGQ 59

Query: 94  ERYAALAPLYYRGAAVAVVVYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLH 152
           E Y  L PL Y    V +V + + SP SF N  + WV E+  H  P     LVG + DL 
Sbjct: 60  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CPKTPFLLVGTQIDLR 118

Query: 153 E------------KREVPAQDGIEYA-EKNGMFFIETSAKTADNINQLFEVLITC 194
           +            ++ +  + G + A +   + ++E SA T   +  +F+  I  
Sbjct: 119 DDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDEAILA 173

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addition, Cdc42 has been implicated in a number of human diseases through interactions with its regulators and downstream effectors. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases

 Score = 63.5 bits (154), Expect = 8e-13
 Identities = 49/177 (27%), Positives = 89/177 (50%), Gaps = 20/177 (11%)

Query: 30  KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQ-DSTTVKFEIW 88
           +N++ K+V++GDS  GK+ ++  F +  F      TV   F + T + + D+  ++  +W
Sbjct: 2   QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV---FENYTASFEIDTQRIELSLW 58

Query: 89  DTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKA-QYWVKELQKHGSPDIVMALVGN 147
           DT+G   Y  + PL Y  +   ++ +DI+ P++ +   + W  E+Q+   P+  M LVG 
Sbjct: 59  DTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF-CPNTKMLLVGC 117

Query: 148 KADL------------HEKREVPAQDGIEYAEKNGMF-FIETSAKTADN-INQLFEV 190
           K+DL            H +  V    G   A++ G   +IE SA  ++N +  +F V
Sbjct: 118 KSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHV 174

Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182

>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

 Score = 62.6 bits (153), Expect = 1e-12
 Identities = 42/167 (25%), Positives = 76/167 (45%), Gaps = 16/167 (9%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           ++++LG  G GK+ I+ +   G+   T   T+G  F  +T+  ++   VKF +WD  GQ+
Sbjct: 1   RILMLGLDGAGKTTILYKLKLGEVVTTIP-TIG--FNVETVEYKN---VKFTVWDVGGQD 54

Query: 95  RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKH----GSPDIVMALVGNKAD 150
           +   L   YY      + V D +  +   +A+  + +L       G+P +++A   NK D
Sbjct: 55  KIRPLWKHYYENTDGLIFVVDSSDRERIEEAKNELHKLLNEEELKGAPLLILA---NKQD 111

Query: 151 LHEKR---EVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLITC 194
           L       E+    G+E  +         SA T D +++  + LI  
Sbjct: 112 LPGALTESELIELLGLESIKGRRWHIQPCSAVTGDGLDEGLDWLIEQ 158

Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158

>gnl|CDD|206707 cd04135, Tc10, Rho GTPase TC10 (Tc10)

 Score = 62.7 bits (152), Expect = 1e-12
 Identities = 46/175 (26%), Positives = 88/175 (50%), Gaps = 18/175 (10%)

Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           +K V++GD  VGK+C+++ +    F P   V       + ++ +     +   ++DTAGQ
Sbjct: 1   LKCVVVGDGAVGKTCLLMSYANDAF-PEEYVPTVFDHYAVSVTVGGKQYL-LGLYDTAGQ 58

Query: 94  ERYAALAPLYYRGAAVAVVVYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLH 152
           E Y  L PL Y    V ++ + + +P SF N  + WV EL+++ +P++   L+G + DL 
Sbjct: 59  EDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY-APNVPYLLIGTQIDLR 117

Query: 153 E------------KREVPAQDGIEYAEKNG-MFFIETSAKTADNINQLF-EVLIT 193
           +            ++ +  + G + A++ G   ++E SA T   +  +F E +I 
Sbjct: 118 DDPKTLARLNDMKEKPITVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIA 172

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interactions with CFTR-associated ligand (CAL). The GTP-bound form of TC10 directs the trafficking of CFTR from the juxtanuclear region to the secretory pathway toward the plasma membrane, away from CAL-mediated DFTR degradation in the lysosome. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal

 Score = 61.2 bits (149), Expect = 4e-12
 Identities = 47/170 (27%), Positives = 84/170 (49%), Gaps = 29/170 (17%)

Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTS------KVTVGASFLSQTIALQDSTTVKFEI 87
           V++VL+GD GVGKS +++  V  +F P +      ++T+ A    + +     TT    I
Sbjct: 3   VRIVLIGDEGVGKSSLIMSLVSEEF-PENVPRVLPEITIPADVTPERV----PTT----I 53

Query: 88  WDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQ-YWVKELQKHG--SPDIVMAL 144
            DT+ + +  A      R A V  +VY +  P +  + +  W+  +++ G   P I   L
Sbjct: 54  VDTSSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPII---L 110

Query: 145 VGNKADLHEKR-EVPAQDGI-----EYAEKNGMFFIETSAKTADNINQLF 188
           VGNK+DL +   +   ++ +     E+ E      +E SAKT  N++++F
Sbjct: 111 VGNKSDLRDGSSQAGLEEEMLPIMNEFREIET--CVECSAKTLINVSEVF 158

Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 168

>gnl|CDD|133342 cd04142, RRP22, Ras-related protein on chromosome 22 (RRP22) family

 Score = 60.7 bits (147), Expect = 1e-11
 Identities = 52/184 (28%), Positives = 82/184 (44%), Gaps = 22/184 (11%)

Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           V++ +LG  GVGK+ IV +F+  +F P   +      L +   +         I D    
Sbjct: 1   VRVAVLGAPGVGKTAIVRQFLAQEF-PEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNM 59

Query: 94  ERYAALAPLYY--------RGAAVAVVVYDITSPDSFNKAQYWVKELQKH-------GSP 138
           +RY   A   +        R +   ++VYDI SPDSF+    +VK L++        G+ 
Sbjct: 60  QRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFH----YVKLLRQQILETRPAGNK 115

Query: 139 DIVMALVGNKADLHEKREVPAQDGIEYAEKNGMF-FIETSAKTADNINQLF-EVLITCTS 196
           +  + +VGNK D    R  P         K+    ++E SAK   +I  LF E+LI+ T+
Sbjct: 116 EPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNWHILLLFKELLISATT 175

Query: 197 SYCS 200
              S
Sbjct: 176 RGRS 179

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. Length = 198

>gnl|CDD|133275 cd01873, RhoBTB, RhoBTB protein is an atypical member of the Rho family of small GTPases

 Score = 56.9 bits (137), Expect = 3e-10
 Identities = 49/197 (24%), Positives = 81/197 (41%), Gaps = 45/197 (22%)

Query: 34  VKLVLLGDSGVGKS-CIVLRFVRG-----QFDPTSKVTVGA--------SFLSQTIALQD 79
           +K V++GD+ VGK+  I  R         Q   T   TV A          L ++  + D
Sbjct: 3   IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVD 62

Query: 80  STTVKFEIWDTAG----QERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQ-YWVKELQK 134
             +V   +WDT G      R+A      Y  + V ++ + I SP+S    +  W  E+ +
Sbjct: 63  GVSVSLRLWDTFGDHDKDRRFA------YGRSDVVLLCFSIASPNSLRNVKTMWYPEI-R 115

Query: 135 HGSPDIVMALVGNKADL-HEKRE------------------VPAQDGIEYAEKNGMFFIE 175
           H  P + + LVG K DL +   +                  +P + G   A++ G+ + E
Sbjct: 116 HFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGRAVAKELGIPYYE 175

Query: 176 TSAKTADNINQLFEVLI 192
           TS  T   +  +F+  I
Sbjct: 176 TSVVTQFGVKDVFDNAI 192

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. Length = 195

>gnl|CDD|206737 cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases

 Score = 57.0 bits (137), Expect = 4e-10
 Identities = 37/122 (30%), Positives = 63/122 (51%), Gaps = 6/122 (4%)

Query: 32  LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQ-DSTTVKFEIWDT 90
           +R KLVL+GD   GK+ ++    +  +  T   TV   F + T  L+ +   V+  +WDT
Sbjct: 12  VRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV---FENYTACLETEEQRVELSLWDT 68

Query: 91  AGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKA-QYWVKELQKHGSPDIVMALVGNKA 149
           +G   Y  + PL Y  +   ++ +DI+ P+ F+ A + W  E+  +  P   + L+G K 
Sbjct: 69  SGSPYYDNVRPLCYSDSDAVLLCFDISRPEIFDSALKKWRAEILDY-CPSTRILLIGCKT 127

Query: 150 DL 151
           DL
Sbjct: 128 DL 129

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 232

>gnl|CDD|206736 cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases

 Score = 53.5 bits (128), Expect = 7e-09
 Identities = 44/174 (25%), Positives = 85/174 (48%), Gaps = 20/174 (11%)

Query: 33  RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQ-DSTTVKFEIWDTA 91
           R K+V++GD+  GK+ ++  F +  +  +   TV   F + T + + D   ++  +WDT+
Sbjct: 1   RCKIVVVGDTQCGKTALLHVFAKDNYPESYVPTV---FENYTASFEIDKHRIELNMWDTS 57

Query: 92  GQERYAALAPLYYRGAAVAVVVYDITSPDSFNKA-QYWVKELQKHGSPDIVMALVGNK-- 148
           G   Y  + PL Y  +   ++ +DI+ P++ +   + W  E Q+   P+  + LVG K  
Sbjct: 58  GSSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEF-CPNAKLVLVGCKLD 116

Query: 149 --ADLHEKREVPAQDGIEYAEKNG---------MFFIETSAKTADN-INQLFEV 190
              DL   RE+  Q  I    + G         + ++E S++ ++N +  +F V
Sbjct: 117 MRTDLSTLRELSKQRLIPVTHEQGSLLARQLGAVAYVECSSRMSENSVRDVFHV 170

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in spermatocytes and early spermatids, with male-germ-cell Rac GTPase-activating protein (MgcRacGAP), where it localizes to the Golgi-derived pro-acrosomal vesicle. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 221

>gnl|CDD|177661 PLN00023, PLN00023, GTP-binding protein; Provisional

 Score = 52.2 bits (125), Expect = 3e-08
 Identities = 42/149 (28%), Positives = 67/149 (44%), Gaps = 30/149 (20%)

Query: 33  RVKLVLLGDSGVGKSCIVLRFVRGQ--FDPTSKV--TVGASFLSQTIALQDSTTVK---- 84
           +V+++++GDSGVGKS +V   V+G     P   +  TVG   ++       S ++K    
Sbjct: 21  QVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSE 80

Query: 85  ----FEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGS--- 137
                E+WD +G ERY     L+Y      + V+D++   +    Q W  E+   G+   
Sbjct: 81  RDFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSA 140

Query: 138 ------------PDIVMALVGNKADLHEK 154
                       P IV   +GNKAD+  K
Sbjct: 141 PLGSGGPGGLPVPYIV---IGNKADIAPK 166

Length = 334

>gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor

 Score = 48.4 bits (115), Expect = 2e-07
 Identities = 40/176 (22%), Positives = 80/176 (45%), Gaps = 21/176 (11%)

Query: 31  NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDT 90
           N  ++++++G    GK+ I+ +   G+   T+  T+G  F  +T+  ++   + F +WD 
Sbjct: 11  NKEMRILMVGLDAAGKTTILYKLKLGES-VTTIPTIG--FNVETVTYKN---ISFTVWDV 64

Query: 91  AGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKA-QYWVKELQKHGSPDIVMALVGNKA 149
            GQ++   L   YY      + V D    D  ++A +   + L +    D V+ +  NK 
Sbjct: 65  GGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQ 124

Query: 150 DLHEKREVPAQDGIEYAEKNGM-------FFIETSAKTADNINQLFEVLITCTSSY 198
           DL +     A    E  EK G+       ++I+ +  T+   + L+E L   +++ 
Sbjct: 125 DLPD-----AMKAAEITEKLGLHSIRDRNWYIQPTCATSG--DGLYEGLTWLSNNL 173

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175

>gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family

 Score = 46.8 bits (112), Expect = 7e-07
 Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 25/132 (18%)

Query: 30  KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWD 89
            N  +++++LG    GK+ I+ +   G+   T+  T+G  F  +T+  ++   VKF +WD
Sbjct: 11  WNKEMRILILGLDNAGKTTILYKLKLGEIV-TTIPTIG--FNVETVTYKN---VKFTVWD 64

Query: 90  TAGQERYAALAPL---YYRGAAVAVVVYDITSPDSFNKAQYWVKELQK-------HGSPD 139
             GQE    L PL   Y+      + V D    D   +A+   +EL           +P 
Sbjct: 65  VGGQES---LRPLWRNYFPNTDAVIFVVDSADRDRIEEAK---EELHALLNEEELADAPL 118

Query: 140 IVMALVGNKADL 151
           ++   + NK DL
Sbjct: 119 LI---LANKQDL 127

Pfam combines a number of different Prosite families together. Length = 174

>gnl|CDD|206689 cd04102, RabL3, Rab GTPase-like family 3 (Rab-like3)

 Score = 45.7 bits (108), Expect = 3e-06
 Identities = 31/112 (27%), Positives = 47/112 (41%), Gaps = 8/112 (7%)

Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDST----TVKFEIWD 89
           VK+++LGDSGVGKS +V    + Q       TVG S   +     + T    T   E+WD
Sbjct: 1   VKVLVLGDSGVGKSSLVHLLCKNQVLGNPSWTVGCSVDVRHHTYGEGTPEEKTFYVELWD 60

Query: 90  TAGQ----ERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGS 137
             G     E   +   ++Y      + V+D+T+  S      W  E     +
Sbjct: 61  VGGSVGSAESVKSTRAVFYNQINGIIFVHDLTNKKSSQNLYRWSLEALNRDT 112

RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. Length = 204

>gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6)

 Score = 44.4 bits (105), Expect = 5e-06
 Identities = 35/128 (27%), Positives = 62/128 (48%), Gaps = 17/128 (13%)

Query: 30  KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWD 89
            N  +++++LG    GK+ I+ +   GQ   T+  TVG  F  +T+  ++   VKF +WD
Sbjct: 6   GNKEMRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVG--FNVETVTYKN---VKFNVWD 59

Query: 90  TAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWV------KELQKHGSPDIVMA 143
             GQ++   L   YY G    + V D    D  ++A+  +      +E++     D ++ 
Sbjct: 60  VGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMR-----DALLL 114

Query: 144 LVGNKADL 151
           +  NK DL
Sbjct: 115 VFANKQDL 122

Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168

>gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases

 Score = 44.2 bits (105), Expect = 5e-06
 Identities = 45/167 (26%), Positives = 69/167 (41%), Gaps = 21/167 (12%)

Query: 36  LVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQER 95
           + L+G    GK+ +V     GQF   +  TVG +    T   + + T+K  +WD  GQ R
Sbjct: 2   ITLVGLQNSGKTTLVNVIASGQFSEDTIPTVGFNMRKVT---KGNVTIK--VWDLGGQPR 56

Query: 96  YAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQK-------HGSPDIVMALVGNK 148
           + ++   Y RG    V V D    +    A+    EL          G P +V   +GNK
Sbjct: 57  FRSMWERYCRGVNAIVYVVDAADREKLEVAK---NELHDLLEKPSLEGIPLLV---LGNK 110

Query: 149 ADLHEK---REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
            DL       E+  Q  ++      +     SAK   NI+ + + LI
Sbjct: 111 NDLPGALSVDELIEQMNLKSITDREVSCYSISAKEKTNIDIVLDWLI 157

Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159

>gnl|CDD|206679 cd01892, Miro2, Mitochondrial Rho family 2 (Miro2), C-terminal

 Score = 43.8 bits (104), Expect = 9e-06
 Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 11/90 (12%)

Query: 109 VAVVVYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAE 167
           VA +VYD + P+SF    Y  +  +K+    +I    V  KADL E+++       E+  
Sbjct: 80  VACLVYDSSDPNSF---SYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQRAEVQPDEFCR 136

Query: 168 KNGMFFIET----SAKTADNINQLFEVLIT 193
           K     +      S++  D+ N+LF  L T
Sbjct: 137 K---LGLPPPLHFSSRLGDSSNELFTKLAT 163

Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 180

>gnl|CDD|234395 TIGR03918, GTP_HydF, [FeFe] hydrogenase H-cluster maturation GTPase HydF

 Score = 43.3 bits (103), Expect = 3e-05
 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 8/84 (9%)

Query: 109 VAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEK 168
           +A++V D             ++EL++   P IV   V NK DL E     + +  +  +K
Sbjct: 88  LALLVVDAGVGPG-EYELELIEELKERKIPYIV---VINKIDLGE----ESAELEKLEKK 139

Query: 169 NGMFFIETSAKTADNINQLFEVLI 192
            G+  I  SA T + I++L E +I
Sbjct: 140 FGLPPIFVSALTGEGIDELKEAII 163

This model describes the family of the [Fe] hydrogenase maturation protein HypF as characterized in Chlamydomonas reinhardtii and found, in an operon with radical SAM proteins HydE and HydG, in numerous bacteria. It has GTPase activity, can bind an 4Fe-4S cluster, and is essential for hydrogenase activity [Protein fate, Protein modification and repair]. Length = 391

>gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases

 Score = 42.0 bits (99), Expect = 5e-05
 Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 9/100 (9%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           K++++G    GK+ I+ +F+ G+   TS  T+G S + +         ++F +WD  GQE
Sbjct: 17  KVIIVGLDNAGKTTILYQFLLGEVVHTSP-TIG-SNVEEI----VYKNIRFLMWDIGGQE 70

Query: 95  RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQK 134
              +    YY      ++V D T  +     +   +EL K
Sbjct: 71  SLRSSWNTYYTNTDAVILVIDSTDRERLPLTK---EELYK 107

Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174

>gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction only]

 Score = 42.1 bits (99), Expect = 5e-05
 Identities = 46/183 (25%), Positives = 72/183 (39%), Gaps = 26/183 (14%)

Query: 25  GSSDAKNLR-VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTV 83
            +S A  +   K+V++G  G GK+     FVR        V   A   S +   +  TTV
Sbjct: 1   LTSAANKMIETKIVVIGPVGAGKT----TFVR-ALSDKPLVITEADASSVSGKGKRPTTV 55

Query: 84  -----------KFEIW--DTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVK 130
                         +    T GQER+  +  +  RGA  A+V+ D + P +F  A+  + 
Sbjct: 56  AMDFGSIELDEDTGVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITF-HAEEIID 114

Query: 131 ELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEY--AEKNGMFFIETSAKTADNINQLF 188
            L       +V+A+  NK DL +    P +   E    E   +  IE  A   +      
Sbjct: 115 FLTSRNPIPVVVAI--NKQDLFDAL--PPEKIREALKLELLSVPVIEIDATEGEGARDQL 170

Query: 189 EVL 191
           +VL
Sbjct: 171 DVL 173

Length = 187

>gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1)

 Score = 41.2 bits (96), Expect = 8e-05
 Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 9/119 (7%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQF-DPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           ++V LG  G GK+ I+ +  + +F  P    T+G  F  +T+  ++   +KF IWD  G+
Sbjct: 1   RVVTLGLDGAGKTTILFKLKQDEFMQPIP--TIG--FNVETVEYKN---LKFTIWDVGGK 53

Query: 94  ERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQY-WVKELQKHGSPDIVMALVGNKADL 151
            +   L   YY      V V D +  D  ++A     K L +    D ++ +  NK D+
Sbjct: 54  HKLRPLWKHYYLNTQAVVFVIDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDV 112

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membrane. Two Tyr-based motifs in the Arf domain are responsible for Golgi localization, while the GAP domain controls lysosomal localization. Length = 169

>gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11)

 Score = 40.9 bits (96), Expect = 8e-05
 Identities = 32/124 (25%), Positives = 55/124 (44%), Gaps = 18/124 (14%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           +++LLG    GKS ++ +    +   T   TVG  F  + + L+   ++   +WD  GQE
Sbjct: 1   QVLLLGLDSAGKSTLLYKLKHAELVTTIP-TVG--FNVEMLQLEKHLSLT--VWDVGGQE 55

Query: 95  RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQK-------HGSPDIVMALVGN 147
           +   +   Y       V V D +     +++Q   KEL+         G P +++A   N
Sbjct: 56  KMRTVWKCYLENTDGLVYVVDSSDEARLDESQ---KELKHILKNEHIKGVPVVLLA---N 109

Query: 148 KADL 151
           K DL
Sbjct: 110 KQDL 113

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160

>gnl|CDD|218203 pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserved region

 Score = 39.9 bits (94), Expect = 3e-04
 Identities = 30/131 (22%), Positives = 53/131 (40%), Gaps = 22/131 (16%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDST-----TVKFEIWD 89
           K++L+G  G GKS +  R +   F   S        L  TI ++ S       +   +WD
Sbjct: 1   KVLLMGLRGSGKSSM--RSI--IFSNYSPRDT--LRLGATIDVEQSHVRFLGNLTLNLWD 54

Query: 90  TAGQERYAALAPLY-----YRGAAVAVVVYDITS---PDSFNKAQYWVKELQKHGSPDI- 140
             GQ+ +            +    V + V+D+ S    +        ++ L ++ SP+  
Sbjct: 55  CPGQDDFMENYLTRQKEHIFSNVGVLIYVFDVESREYEEDLATLVKIIEALYQY-SPNAK 113

Query: 141 VMALVGNKADL 151
           V  L+ +K DL
Sbjct: 114 VFVLI-HKMDL 123

GTR1 was first identified in S. cerevisiae as a suppressor of a mutation in RCC1. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1. Included in this family is the human Rag C, a novel protein that has been shown to interact with RagA/B. Length = 230

>gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases

 Score = 39.4 bits (92), Expect = 4e-04
 Identities = 36/123 (29%), Positives = 53/123 (43%), Gaps = 14/123 (11%)

Query: 36  LVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQER 95
           +V+LG    GK+ ++ R    +F  T   T G +     ++L ++  V F  WD  GQE+
Sbjct: 6   IVMLGLDSAGKTTVLYRLKFNEFVNTVP-TKGFNTEKIKVSLGNAKGVTFHFWDVGGQEK 64

Query: 96  YAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQK-------HGSPDIVMALVGNK 148
              L   Y R     V V D    +   +A+    EL K        G P +V+A   NK
Sbjct: 65  LRPLWKSYTRCTDGIVFVVDSVDVERMEEAK---TELHKITKFSENQGVPVLVLA---NK 118

Query: 149 ADL 151
            DL
Sbjct: 119 QDL 121

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183

>gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional

 Score = 39.1 bits (91), Expect = 5e-04
 Identities = 41/163 (25%), Positives = 74/163 (45%), Gaps = 26/163 (15%)

Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           V+++++G    GK+ I+ +   G+   T+  T+G  F  +T+  ++   +KF +WD  GQ
Sbjct: 18  VRILMVGLDAAGKTTILYKLKLGEV-VTTIPTIG--FNVETVEYKN---LKFTMWDVGGQ 71

Query: 94  ERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPD----IVMALVGNKA 149
           ++   L   YY+     + V D    +    A+   +EL++  S D     V+ +  NK 
Sbjct: 72  DKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAR---EELERMLSEDELRDAVLLVFANKQ 128

Query: 150 DLHEKREVPAQDGIEYAEKNGM-------FFIE-TSAKTADNI 184
           DL       A    E  EK G+       ++I+   A TA  +
Sbjct: 129 DLPN-----AMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGL 166

Length = 182

>gnl|CDD|223561 COG0486, ThdF, Predicted GTPase [General function prediction only]

 Score = 39.5 bits (93), Expect = 7e-04
 Identities = 31/117 (26%), Positives = 41/117 (35%), Gaps = 26/117 (22%)

Query: 83  VKFEIWDTAGQ------------ERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVK 130
           +   + DTAG             ER           A + + V D + P    K    + 
Sbjct: 265 IPVRLVDTAGIRETDDVVERIGIERAKKAI----EEADLVLFVLDASQPLD--KEDLALI 318

Query: 131 ELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQL 187
           EL     P IV   V NKADL     V   +       NG   I  SAKT + ++ L
Sbjct: 319 ELLPKKKPIIV---VLNKADL-----VSKIELESEKLANGDAIISISAKTGEGLDAL 367

Length = 454

>gnl|CDD|206727 cd04164, trmE, trmE is a tRNA modification GTPase

 Score = 37.5 bits (88), Expect = 0.002
 Identities = 29/118 (24%), Positives = 42/118 (35%), Gaps = 31/118 (26%)

Query: 83  VKFEIWDTAG------------QER-YAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWV 129
           +   + DTAG             ER   A+       A + ++V D +        +   
Sbjct: 51  IPVRLIDTAGLRETEDEIEKIGIERAREAIE-----EADLVLLVVDASEG---LDEEDLE 102

Query: 130 KELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQL 187
                   P IV   V NK+DL         D    +E NG   I  SAKT + I++L
Sbjct: 103 ILELPAKKPVIV---VLNKSDL-------LSDAEGISELNGKPIIAISAKTGEGIDEL 150

TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. Length = 159

>gnl|CDD|219538 pfam07728, AAA_5, AAA domain (dynein-related subfamily)

 Score = 36.5 bits (85), Expect = 0.002
 Identities = 29/147 (19%), Positives = 49/147 (33%), Gaps = 36/147 (24%)

Query: 36  LVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVK--FEIWDTAGQ 93
           ++L+G  G GKS +  R         +            + L   TT +      +    
Sbjct: 2   VLLVGPPGTGKSELAERL--------AAALSNRPVF--YVQLTRDTTEEDLKGRRNIDPG 51

Query: 94  ERYAALAPLYY--RGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADL 151
                  PL    R   +AV+       D  N+A           +PD++ +L+     L
Sbjct: 52  GASWVDGPLVRAAREGEIAVL-------DEINRA-----------NPDVLNSLLSL---L 90

Query: 152 HEKRE-VPAQDGIEYAEKNGMFFIETS 177
            E+R  +P    +  A  +G   I T 
Sbjct: 91  DERRLLLPEGGELVKAAPDGFRLIATM 117

This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model. Length = 135

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	200
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	100.0
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	100.0
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	100.0
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	100.0
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	100.0
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	100.0
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	100.0
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	100.0
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	100.0
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	100.0
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	100.0
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	100.0
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	100.0
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	100.0
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	100.0
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	100.0
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	100.0
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	100.0
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	100.0
KOG0394	210	consensus Ras-related GTPase [General function pre	100.0
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	100.0
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	100.0
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	100.0
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	100.0
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	100.0
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	100.0
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	100.0
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	100.0
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	100.0
PLN03110	216	Rab GTPase; Provisional	100.0
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	100.0
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	100.0
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	100.0
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	100.0
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	100.0
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	100.0
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	100.0
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	100.0
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	100.0
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	100.0
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	100.0
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	100.0
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	100.0
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	100.0
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	100.0
PTZ00369	189	Ras-like protein; Provisional	100.0
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	100.0
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	100.0
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	100.0
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	100.0
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	100.0
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	100.0
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
PLN03108	210	Rab family protein; Provisional	100.0
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	100.0
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	100.0
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	100.0
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	100.0
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	100.0
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	100.0
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	100.0
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	100.0
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	100.0
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	100.0
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	100.0
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	100.0
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	100.0
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	100.0
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	100.0
PLN03118	211	Rab family protein; Provisional	100.0
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	100.0
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	100.0
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	100.0
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	100.0
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	100.0
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	100.0
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	100.0
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	100.0
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	100.0
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.98
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.98
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	99.98
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.98
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.98
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.98
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.98
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.97
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.97
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.97
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.97
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.97
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.97
PLN00223	181	ADP-ribosylation factor; Provisional	99.97
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.97
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	99.97
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	99.97
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.97
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.97
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.97
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.97
KOG0395	196	consensus Ras-related GTPase [General function pre	99.97
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.97
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.97
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.97
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.97
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.97
PTZ00133	182	ADP-ribosylation factor; Provisional	99.97
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.96
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.96
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.96
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.96
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	99.96
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.96
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.96
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.96
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.95
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.95
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.95
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.95
PLN00023	334	GTP-binding protein; Provisional	99.95
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.95
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	99.95
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.95
KOG4252	246	consensus GTP-binding protein [Signal transduction	99.95
PTZ00099	176	rab6; Provisional	99.95
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.94
PRK12299	335	obgE GTPase CgtA; Reviewed	99.94
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.94
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.94
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.94
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.94
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.94
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.93
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.93
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.93
COG1100	219	GTPase SAR1 and related small G proteins [General	99.92
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.92
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	99.92
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.92
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.92
PRK04213	201	GTP-binding protein; Provisional	99.92
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.91
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.91
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.91
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	99.91
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.91
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.91
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.9
PRK15494	339	era GTPase Era; Provisional	99.9
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.9
PRK12297	424	obgE GTPase CgtA; Reviewed	99.9
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.89
cd00881	189	GTP_translation_factor GTP translation factor fami	99.89
KOG1673	205	consensus Ras GTPases [General function prediction	99.89
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.89
PRK03003	472	GTP-binding protein Der; Reviewed	99.89
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.89
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.89
PRK11058	426	GTPase HflX; Provisional	99.89
KOG3883	198	consensus Ras family small GTPase [Signal transduc	99.89
PRK12296	500	obgE GTPase CgtA; Reviewed	99.89
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.89
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.88
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.88
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.88
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	99.88
PRK00089	292	era GTPase Era; Reviewed	99.88
PRK03003	472	GTP-binding protein Der; Reviewed	99.88
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.88
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.88
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.88
PRK12298	390	obgE GTPase CgtA; Reviewed	99.88
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.88
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.87
COG1159	298	Era GTPase [General function prediction only]	99.87
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.86
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.86
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.86
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	99.85
CHL00189	742	infB translation initiation factor 2; Provisional	99.85
KOG4423	229	consensus GTP-binding protein-like, RAS superfamil	99.85
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.85
PRK05433	600	GTP-binding protein LepA; Provisional	99.85
PRK05306	787	infB translation initiation factor IF-2; Validated	99.85
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.85
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.85
PRK00093	435	GTP-binding protein Der; Reviewed	99.84
PRK00093	435	GTP-binding protein Der; Reviewed	99.84
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.84
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.83
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.83
KOG0096	216	consensus GTPase Ran/TC4/GSP1 (nuclear protein tra	99.83
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.83
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	99.82
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	99.82
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.82
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.82
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.82
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.82
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.82
COG1160	444	Predicted GTPases [General function prediction onl	99.81
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.81
PRK12317	425	elongation factor 1-alpha; Reviewed	99.81
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.81
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.81
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.81
COG2229	187	Predicted GTPase [General function prediction only	99.8
COG1160	444	Predicted GTPases [General function prediction onl	99.8
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.8
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.8
COG2262	411	HflX GTPases [General function prediction only]	99.8
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.8
COG0486	454	ThdF Predicted GTPase [General function prediction	99.8
PRK04004	586	translation initiation factor IF-2; Validated	99.79
PRK10218	607	GTP-binding protein; Provisional	99.79
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.78
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.78
COG0218	200	Predicted GTPase [General function prediction only	99.78
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	99.77
PRK12735	396	elongation factor Tu; Reviewed	99.76
PRK12736	394	elongation factor Tu; Reviewed	99.76
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.76
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.75
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.75
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.74
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.74
COG1084	346	Predicted GTPase [General function prediction only	99.73
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.73
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.73
CHL00071	409	tufA elongation factor Tu	99.73
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.73
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.73
COG3596	296	Predicted GTPase [General function prediction only	99.72
COG1163	365	DRG Predicted GTPase [General function prediction	99.72
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	99.71
PRK00049	396	elongation factor Tu; Reviewed	99.71
PLN03126	478	Elongation factor Tu; Provisional	99.7
KOG0462	650	consensus Elongation factor-type GTP-binding prote	99.7
PLN03127	447	Elongation factor Tu; Provisional	99.69
PLN00043	447	elongation factor 1-alpha; Provisional	99.69
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.69
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.69
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.69
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.69
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.69
COG0536	369	Obg Predicted GTPase [General function prediction	99.68
PRK09866	741	hypothetical protein; Provisional	99.68
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.68
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.68
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.68
PTZ00141	446	elongation factor 1- alpha; Provisional	99.67
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.66
KOG3905	473	consensus Dynein light intermediate chain [Cell mo	99.65
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.65
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.64
PRK13351	687	elongation factor G; Reviewed	99.64
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.63
KOG1145	683	consensus Mitochondrial translation initiation fac	99.63
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.62
KOG0077	193	consensus Vesicle coat complex COPII, GTPase subun	99.62
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	99.6
KOG0090	238	consensus Signal recognition particle receptor, be	99.6
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.6
PRK09602	396	translation-associated GTPase; Reviewed	99.59
PRK12739	691	elongation factor G; Reviewed	99.58
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	99.57
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.57
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.56
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.55
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.53
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.52
PRK12740	668	elongation factor G; Reviewed	99.52
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.5
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	99.49
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	99.49
PRK13768	253	GTPase; Provisional	99.49
PRK00007	693	elongation factor G; Reviewed	99.49
PRK14845	1049	translation initiation factor IF-2; Provisional	99.47
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	99.46
TIGR00101	199	ureG urease accessory protein UreG. This model rep	99.46
PTZ00258	390	GTP-binding protein; Provisional	99.46
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.44
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	99.44
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.43
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	99.43
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	99.42
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	99.42
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	99.42
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	99.41
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	99.4
PRK09435	332	membrane ATPase/protein kinase; Provisional	99.4
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	99.4
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.39
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	99.36
PLN00116	843	translation elongation factor EF-2 subunit; Provis	99.35
KOG0082	354	consensus G-protein alpha subunit (small G protein	99.35
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	99.34
PRK07560	731	elongation factor EF-2; Reviewed	99.34
PRK09601	364	GTP-binding protein YchF; Reviewed	99.34
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	99.33
KOG0461	522	consensus Selenocysteine-specific elongation facto	99.32
PTZ00416	836	elongation factor 2; Provisional	99.32
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	99.31
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	99.3
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	99.3
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	99.29
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	99.29
KOG0410	410	consensus Predicted GTP binding protein [General f	99.27
KOG3886	295	consensus GTP-binding protein [Signal transduction	99.26
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	99.25
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	99.24
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	99.24
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	99.24
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	99.22
COG5019	373	CDC3 Septin family protein [Cell division and chro	99.21
KOG1954	532	consensus Endocytosis/signaling protein EHD1 [Sign	99.15
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	99.14
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	99.11
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	99.09
COG3276	447	SelB Selenocysteine-specific translation elongatio	99.08
KOG0468	971	consensus U5 snRNP-specific protein [Translation,	99.04
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	99.04
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	99.02
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	99.02
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	99.02
PRK12289	352	GTPase RsgA; Reviewed	99.02
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.98
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.96
COG0012	372	Predicted GTPase, probable translation factor [Tra	98.96
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	98.95
PRK00098	298	GTPase RsgA; Reviewed	98.93
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	98.92
PRK12288	347	GTPase RsgA; Reviewed	98.91
KOG1487	358	consensus GTP-binding protein DRG1 (ODN superfamil	98.88
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	98.86
KOG2486	320	consensus Predicted GTPase [General function predi	98.85
KOG0448	749	consensus Mitofusin 1 GTPase, involved in mitochon	98.83
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.81
COG0050	394	TufB GTPases - translation elongation factors [Tra	98.81
KOG3887	347	consensus Predicted small GTPase involved in nucle	98.81
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.8
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	98.79
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.76
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.76
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	98.73
PF09547	492	Spore_IV_A: Stage IV sporulation protein A (spore_	98.71
KOG1143	591	consensus Predicted translation elongation factor	98.68
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.68
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.67
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.64
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.64
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.64
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	98.62
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.6
COG1161	322	Predicted GTPases [General function prediction onl	98.59
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	98.59
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.59
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	98.54
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.54
COG5258	527	GTPBP1 GTPase [General function prediction only]	98.54
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	98.52
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.52
PRK14974	336	cell division protein FtsY; Provisional	98.49
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.48
PRK10416	318	signal recognition particle-docking protein FtsY;	98.46
KOG0463	641	consensus GTP-binding protein GP-1 [General functi	98.46
cd03112	158	CobW_like The function of this protein family is u	98.45
KOG0467	887	consensus Translation elongation factor 2/ribosome	98.43
PRK01889	356	GTPase RsgA; Reviewed	98.42
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.42
KOG0466	466	consensus Translation initiation factor 2, gamma s	98.41
PRK12288	347	GTPase RsgA; Reviewed	98.41
TIGR00064	272	ftsY signal recognition particle-docking protein F	98.39
KOG0447	980	consensus Dynamin-like GTP binding protein [Genera	98.38
KOG1491	391	consensus Predicted GTP-binding protein (ODN super	98.37
PRK12289	352	GTPase RsgA; Reviewed	98.36
PRK13695	174	putative NTPase; Provisional	98.34
PRK13796	365	GTPase YqeH; Provisional	98.33
KOG0460	449	consensus Mitochondrial translation elongation fac	98.31
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	98.3
PRK13796	365	GTPase YqeH; Provisional	98.29
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.27
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.26
COG1162	301	Predicted GTPases [General function prediction onl	98.24
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	98.19
KOG0464	753	consensus Elongation factor G [Translation, riboso	98.19
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	98.16
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	98.16
PRK00098	298	GTPase RsgA; Reviewed	98.14
KOG3859	406	consensus Septins (P-loop GTPases) [Cell cycle con	98.14
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	98.13
COG3523	1188	IcmF Type VI protein secretion system component Va	98.12
COG1162	301	Predicted GTPases [General function prediction onl	98.09
KOG0085	359	consensus G protein subunit Galphaq/Galphay, small	98.09
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	98.09
KOG4273	418	consensus Uncharacterized conserved protein [Funct	98.08
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.06
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	98.05
KOG2484	435	consensus GTPase [General function prediction only	98.03
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	97.98
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	97.94
COG0523	323	Putative GTPases (G3E family) [General function pr	97.94
cd03115	173	SRP The signal recognition particle (SRP) mediates	97.9
PRK00771	437	signal recognition particle protein Srp54; Provisi	97.89
KOG0099	379	consensus G protein subunit Galphas, small G prote	97.89
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	97.89
KOG2485	335	consensus Conserved ATP/GTP binding protein [Gener	97.88
PRK10867	433	signal recognition particle protein; Provisional	97.86
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.83
PF11111	176	CENP-M: Centromere protein M (CENP-M); InterPro: I	97.82
KOG1534	273	consensus Putative transcription factor FET5 [Tran	97.81
KOG0465	721	consensus Mitochondrial elongation factor [Transla	97.8
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	97.79
TIGR00959	428	ffh signal recognition particle protein. This mode	97.78
cd03114	148	ArgK-like The function of this protein family is u	97.77
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	97.76
PRK11537	318	putative GTP-binding protein YjiA; Provisional	97.75
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	97.74
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.7
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	97.7
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	97.69
KOG0459	501	consensus Polypeptide release factor 3 [Translatio	97.68
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	97.68
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	97.68
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	97.68
cd03111	106	CpaE_like This protein family consists of proteins	97.68
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	97.67
PRK08118	167	topology modulation protein; Reviewed	97.67
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.64
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	97.64
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	97.61
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	97.6
PRK07261	171	topology modulation protein; Provisional	97.6
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	97.57
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	97.55
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	97.52
KOG3929	363	consensus Uncharacterized conserved protein [Funct	97.52
COG4598	256	HisP ABC-type histidine transport system, ATPase c	97.5
TIGR02475	341	CobW cobalamin biosynthesis protein CobW. A broade	97.49
KOG2423	572	consensus Nucleolar GTPase [General function predi	97.49
KOG0469	842	consensus Elongation factor 2 [Translation, riboso	97.48
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	97.48
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.47
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	97.41
PF00005	137	ABC_tran: ABC transporter This structure is on hol	97.41
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	97.39
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	97.38
PRK04195	482	replication factor C large subunit; Provisional	97.36
KOG0780	483	consensus Signal recognition particle, subunit Srp	97.35
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	97.34
PF00004	132	AAA: ATPase family associated with various cellula	97.34
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	97.32
PRK06217	183	hypothetical protein; Validated	97.32
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	97.31
PRK03839	180	putative kinase; Provisional	97.31
PLN02200	234	adenylate kinase family protein	97.3
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	97.29
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	97.29
smart00382	148	AAA ATPases associated with a variety of cellular	97.29
PRK14738	206	gmk guanylate kinase; Provisional	97.28
cd03216	163	ABC_Carb_Monos_I This family represents the domain	97.27
TIGR00235	207	udk uridine kinase. Model contains a number of lon	97.27
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	97.27
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	97.27
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	97.26
PRK14530	215	adenylate kinase; Provisional	97.26
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	97.26
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	97.25
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	97.23
PRK13949	169	shikimate kinase; Provisional	97.22
PRK05416	288	glmZ(sRNA)-inactivating NTPase; Provisional	97.21
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	97.21
cd02036	179	MinD Bacterial cell division requires the formatio	97.2
KOG1533	290	consensus Predicted GTPase [General function predi	97.2
PRK05480	209	uridine/cytidine kinase; Provisional	97.19
PRK01889	356	GTPase RsgA; Reviewed	97.19
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	97.19
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	97.18
PRK14532	188	adenylate kinase; Provisional	97.18
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	97.17
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	97.17
PF02367	123	UPF0079: Uncharacterised P-loop hydrolase UPF0079;	97.17
COG3638	258	ABC-type phosphate/phosphonate transport system, A	97.17
PRK08233	182	hypothetical protein; Provisional	97.16
cd03110	179	Fer4_NifH_child This protein family's function is	97.16
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	97.15
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	97.15
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	97.14
PTZ00088	229	adenylate kinase 1; Provisional	97.13
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	97.12
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	97.12
PRK00625	173	shikimate kinase; Provisional	97.12
PRK10646	153	ADP-binding protein; Provisional	97.12
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	97.11
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	97.11
KOG3347	176	consensus Predicted nucleotide kinase/nuclear prot	97.11
PRK14531	183	adenylate kinase; Provisional	97.11
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	97.1
PF05673	249	DUF815: Protein of unknown function (DUF815); Inte	97.1

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4e-40  Score=225.43  Aligned_cols=171  Identities=41%  Similarity=0.720  Sum_probs=162.7

Q ss_pred             CCCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCc
Q 028986           28 DAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGA  107 (200)
Q Consensus        28 ~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~  107 (200)
                      ...++.+||+++|++|+|||+|+.+|..+.|...+..|++.++..+.+.+ ++..+++++|||+|+++++....+|++++
T Consensus         4 ~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~-~gk~iKlQIWDTAGQERFrtit~syYR~a   82 (205)
T KOG0084|consen    4 PEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVEL-DGKTIKLQIWDTAGQERFRTITSSYYRGA   82 (205)
T ss_pred             cccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeee-cceEEEEEeeeccccHHHhhhhHhhccCC
Confidence            35678999999999999999999999999999999999999999999988 55558999999999999999999999999


Q ss_pred             cEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCe-EEEecCCCCCCHHH
Q 028986          108 AVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMF-FIETSAKTADNINQ  186 (200)
Q Consensus       108 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~S~~~~~~i~~  186 (200)
                      +++|+|||+++.+||+.+..|+.++.+....++|.++|+||+|+.+.+.++.++++.|+.+++++ ++++||+++.|+++
T Consensus        83 hGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~  162 (205)
T KOG0084|consen   83 HGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVED  162 (205)
T ss_pred             CeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHH
Confidence            99999999999999999999999999999899999999999999999999999999999999999 99999999999999


Q ss_pred             HHHHHHHhhcccC
Q 028986          187 LFEVLITCTSSYC  199 (200)
Q Consensus       187 ~~~~i~~~~~~~~  199 (200)
                      +|..|...+.+++
T Consensus       163 ~F~~la~~lk~~~  175 (205)
T KOG0084|consen  163 AFLTLAKELKQRK  175 (205)
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999888765

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.5e-38  Score=215.84  Aligned_cols=167  Identities=57%  Similarity=0.961  Sum_probs=158.7

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA  110 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  110 (200)
                      ...+||+++|..++|||||+-++..+.|.+...+|++.-+..+.+.+.+. .+++.+|||+|+++|..+.+.|+++++++
T Consensus         3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~-~ikfeIWDTAGQERy~slapMYyRgA~AA   81 (200)
T KOG0092|consen    3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDN-TIKFEIWDTAGQERYHSLAPMYYRGANAA   81 (200)
T ss_pred             cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCc-EEEEEEEEcCCcccccccccceecCCcEE
Confidence            46789999999999999999999999999988999999999999998666 49999999999999999999999999999


Q ss_pred             EEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Q 028986          111 VVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEV  190 (200)
Q Consensus       111 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~  190 (200)
                      |+|||+++.+||..++.|+..+.+...+++-+.+|+||+|+.+.+++..+++..+++..+..++++||+++.|+.++|..
T Consensus        82 ivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~  161 (200)
T KOG0092|consen   82 IVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQA  161 (200)
T ss_pred             EEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHH
Confidence            99999999999999999999999988888889999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhccc
Q 028986          191 LITCTSSY  198 (200)
Q Consensus       191 i~~~~~~~  198 (200)
                      |.+.+...
T Consensus       162 Ia~~lp~~  169 (200)
T KOG0092|consen  162 IAEKLPCS  169 (200)
T ss_pred             HHHhccCc
Confidence            99988764

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.1e-37  Score=216.30  Aligned_cols=170  Identities=44%  Similarity=0.719  Sum_probs=161.9

Q ss_pred             CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCcc
Q 028986           29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAA  108 (200)
Q Consensus        29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d  108 (200)
                      .....+||+++|+++||||+|+.+|..+.+...+..+.+.++..+++..+. ..+.+++|||.|++++......|++.|+
T Consensus         8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g-~~i~lQiWDtaGQerf~ti~~sYyrgA~   86 (207)
T KOG0078|consen    8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDG-KKIKLQIWDTAGQERFRTITTAYYRGAM   86 (207)
T ss_pred             CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCC-eEEEEEEEEcccchhHHHHHHHHHhhcC
Confidence            668899999999999999999999999999999999999999999998854 5599999999999999999999999999


Q ss_pred             EEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Q 028986          109 VAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF  188 (200)
Q Consensus       109 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~  188 (200)
                      ++++|||+++..||+.+..|+..+.++...++|.++|+||+|+...++++.+..+++|.++|++++|+||++|.||.++|
T Consensus        87 gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF  166 (207)
T KOG0078|consen   87 GILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAF  166 (207)
T ss_pred             eeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHHH
Confidence            99999999999999999999999999988899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcccC
Q 028986          189 EVLITCTSSYC  199 (200)
Q Consensus       189 ~~i~~~~~~~~  199 (200)
                      ..|.+.+.++.
T Consensus       167 ~~La~~i~~k~  177 (207)
T KOG0078|consen  167 LSLARDILQKL  177 (207)
T ss_pred             HHHHHHHHhhc
Confidence            99998887543

>cd04120 Rab12 Rab12 subfamily

Probab=100.00  E-value=1.8e-36  Score=217.52  Aligned_cols=164  Identities=36%  Similarity=0.655  Sum_probs=148.2

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV  113 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v  113 (200)
                      +.|+++|..|||||||+++|..+.+...+.++.+.++....+.+. +..+.+.+||++|++.+..++..+++++|++|+|
T Consensus         1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~-~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlV   79 (202)
T cd04120           1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELR-GKKIRLQIWDTAGQERFNSITSAYYRSAKGIILV   79 (202)
T ss_pred             CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEEC-CEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEE
Confidence            369999999999999999999999988888888888877777764 4558999999999999999999999999999999


Q ss_pred             EeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHc-CCeEEEecCCCCCCHHHHHHHHH
Q 028986          114 YDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKN-GMFFIETSAKTADNINQLFEVLI  192 (200)
Q Consensus       114 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~S~~~~~~i~~~~~~i~  192 (200)
                      ||++++++|+.+..|+..+......++|+++|+||+|+...+++..++..++++++ ++.++++||++|.|++++|++|+
T Consensus        80 fDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~  159 (202)
T cd04120          80 YDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLV  159 (202)
T ss_pred             EECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHH
Confidence            99999999999999999888776678999999999999877888888889999875 78999999999999999999999


Q ss_pred             Hhhccc
Q 028986          193 TCTSSY  198 (200)
Q Consensus       193 ~~~~~~  198 (200)
                      +.+.+.
T Consensus       160 ~~~~~~  165 (202)
T cd04120         160 DDILKK  165 (202)
T ss_pred             HHHHHh
Confidence            887654

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.4e-36  Score=207.41  Aligned_cols=166  Identities=43%  Similarity=0.764  Sum_probs=155.2

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA  110 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  110 (200)
                      .+.+|++++|+.++||||||++++.+.|...|..|++.++...++.+.+. .+++++|||+|+++++.+.+.|++++.++
T Consensus        20 ~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~-~vrLQlWDTAGQERFrslipsY~Rds~va   98 (221)
T KOG0094|consen   20 LKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDR-TVRLQLWDTAGQERFRSLIPSYIRDSSVA   98 (221)
T ss_pred             ceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCc-EEEEEEEecccHHHHhhhhhhhccCCeEE
Confidence            44589999999999999999999999999999999999999999988555 59999999999999999999999999999


Q ss_pred             EEEEeCCCHHhHHHHHHHHHHHHHcCCC-CCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Q 028986          111 VVVYDITSPDSFNKAQYWVKELQKHGSP-DIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFE  189 (200)
Q Consensus       111 i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~  189 (200)
                      |+|||+++..||+...+|++.+...... ++-+++|+||.||.+.+++..++....++++++.|+++|++.|.||.++|.
T Consensus        99 viVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFr  178 (221)
T KOG0094|consen   99 VIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFR  178 (221)
T ss_pred             EEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHH
Confidence            9999999999999999999999877655 588999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcc
Q 028986          190 VLITCTSS  197 (200)
Q Consensus       190 ~i~~~~~~  197 (200)
                      .|...+..
T Consensus       179 rIaa~l~~  186 (221)
T KOG0094|consen  179 RIAAALPG  186 (221)
T ss_pred             HHHHhccC
Confidence            98877654

>cd04121 Rab40 Rab40 subfamily

Probab=100.00  E-value=3.8e-36  Score=213.94  Aligned_cols=166  Identities=36%  Similarity=0.592  Sum_probs=148.8

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA  110 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  110 (200)
                      +..+||+|+|..|||||||+++|..+.+...+.++.+.++....+.+ ++..+.+.+||++|++.+..++..+++.+|++
T Consensus         4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~-~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~i   82 (189)
T cd04121           4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILL-DGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGI   82 (189)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEE-CCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence            45689999999999999999999998887777777777775555655 45568999999999999999999999999999


Q ss_pred             EEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Q 028986          111 VVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEV  190 (200)
Q Consensus       111 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~  190 (200)
                      |+|||++++.+++.+..|+..+... .+++|+++|+||.|+...+.+..++++.+++.+++++++|||++|.||+++|++
T Consensus        83 llVfD~t~~~Sf~~~~~w~~~i~~~-~~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~  161 (189)
T cd04121          83 ILVYDITNRWSFDGIDRWIKEIDEH-APGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTE  161 (189)
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHh-CCCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence            9999999999999999999999776 368999999999999887788899999999999999999999999999999999


Q ss_pred             HHHhhccc
Q 028986          191 LITCTSSY  198 (200)
Q Consensus       191 i~~~~~~~  198 (200)
                      |++.+..+
T Consensus       162 l~~~i~~~  169 (189)
T cd04121         162 LARIVLMR  169 (189)
T ss_pred             HHHHHHHh
Confidence            99877654

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=9.4e-37  Score=206.69  Aligned_cols=165  Identities=41%  Similarity=0.795  Sum_probs=156.4

Q ss_pred             CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccE
Q 028986           30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAV  109 (200)
Q Consensus        30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~  109 (200)
                      ..+.+|++++|+.|||||+|+.+++...|.+.+..|.+.++..+.+.+ +++++++++|||.|++.+......|++.+-+
T Consensus         3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~i-d~k~IKlqiwDtaGqe~frsv~~syYr~a~G   81 (216)
T KOG0098|consen    3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTI-DGKQIKLQIWDTAGQESFRSVTRSYYRGAAG   81 (216)
T ss_pred             ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEE-cCceEEEEEEecCCcHHHHHHHHHHhccCcc
Confidence            356889999999999999999999999999999999999999999998 5556999999999999999999999999999


Q ss_pred             EEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Q 028986          110 AVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFE  189 (200)
Q Consensus       110 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~  189 (200)
                      +|+|||+++++||..+..|+..++++..++.-+++++||+|+...++++.++.+.||++++..++++||+++.++++.|.
T Consensus        82 alLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~  161 (216)
T KOG0098|consen   82 ALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFI  161 (216)
T ss_pred             eEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHH
Confidence            99999999999999999999999999889999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHhh
Q 028986          190 VLITCT  195 (200)
Q Consensus       190 ~i~~~~  195 (200)
                      .....+
T Consensus       162 nta~~I  167 (216)
T KOG0098|consen  162 NTAKEI  167 (216)
T ss_pred             HHHHHH
Confidence            776654

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=1.6e-36  Score=200.72  Aligned_cols=167  Identities=44%  Similarity=0.759  Sum_probs=155.9

Q ss_pred             CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccE
Q 028986           30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAV  109 (200)
Q Consensus        30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~  109 (200)
                      ....+||+++|.+|+|||||+.++..+.|++....+++.++..+.+.+ ++..+++.+|||+|+++++.+...|++.+-+
T Consensus         8 ~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~v-dg~~~KlaiWDTAGqErFRtLTpSyyRgaqG   86 (209)
T KOG0080|consen    8 YDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQV-DGKRLKLAIWDTAGQERFRTLTPSYYRGAQG   86 (209)
T ss_pred             cceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEE-cCceEEEEEEeccchHhhhccCHhHhccCce
Confidence            466799999999999999999999999999999989999999888888 4555999999999999999999999999999


Q ss_pred             EEEEEeCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Q 028986          110 AVVVYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF  188 (200)
Q Consensus       110 ~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~  188 (200)
                      +|+|||++.+++|..+..|++++...+ .+++-.++|+||+|...++.++.++..+|++++++-+++|||++.++++.+|
T Consensus        87 iIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~F  166 (209)
T KOG0080|consen   87 IILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQCCF  166 (209)
T ss_pred             eEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHHH
Confidence            999999999999999999999998776 5677788999999998889999999999999999999999999999999999


Q ss_pred             HHHHHhhcc
Q 028986          189 EVLITCTSS  197 (200)
Q Consensus       189 ~~i~~~~~~  197 (200)
                      +.+++++.+
T Consensus       167 eelveKIi~  175 (209)
T KOG0080|consen  167 EELVEKIIE  175 (209)
T ss_pred             HHHHHHHhc
Confidence            999998865

>cd04122 Rab14 Rab14 subfamily

Probab=100.00  E-value=5.8e-35  Score=204.77  Aligned_cols=164  Identities=38%  Similarity=0.715  Sum_probs=146.9

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEE
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVV  112 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~  112 (200)
                      .+||+++|++|||||||+++|.+..+.+.+.++.+.++....+.. ++..+++.+||+||++.+...+..+++++|++|+
T Consensus         2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il   80 (166)
T cd04122           2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEV-NGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM   80 (166)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEE-CCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence            479999999999999999999999888877777777776666655 4445899999999999999999999999999999


Q ss_pred             EEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Q 028986          113 VYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI  192 (200)
Q Consensus       113 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~  192 (200)
                      |||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..+++.++++..+++++++||++|.|+.++|.+++
T Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~  160 (166)
T cd04122          81 VYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETA  160 (166)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence            99999999999999999998777667899999999999988878888899999999999999999999999999999999


Q ss_pred             Hhhcc
Q 028986          193 TCTSS  197 (200)
Q Consensus       193 ~~~~~  197 (200)
                      +.+.+
T Consensus       161 ~~~~~  165 (166)
T cd04122         161 KKIYQ  165 (166)
T ss_pred             HHHhh
Confidence            87643

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.7e-36  Score=195.73  Aligned_cols=169  Identities=36%  Similarity=0.636  Sum_probs=157.6

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA  110 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  110 (200)
                      +..+|++|+|...+|||||+.++.+..|.+.+..+.+.++..+++.- +...+++++|||.|++.++.+...++++++++
T Consensus        19 DymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr-~~kRiklQiwDTagqEryrtiTTayyRgamgf   97 (193)
T KOG0093|consen   19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYR-SDKRIKLQIWDTAGQERYRTITTAYYRGAMGF   97 (193)
T ss_pred             cceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeee-cccEEEEEEEecccchhhhHHHHHHhhccceE
Confidence            56679999999999999999999999999999999999987776544 44559999999999999999999999999999


Q ss_pred             EEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Q 028986          111 VVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEV  190 (200)
Q Consensus       111 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~  190 (200)
                      |++||+++.+||..++.|.-.+...+..++|+|+|+||||+..++.++.+....++.++|..+|++|++.+.|++++|+.
T Consensus        98 iLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe~  177 (193)
T KOG0093|consen   98 ILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVKQVFER  177 (193)
T ss_pred             EEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcccCC
Q 028986          191 LITCTSSYCS  200 (200)
Q Consensus       191 i~~~~~~~~~  200 (200)
                      ++..+.+.+|
T Consensus       178 lv~~Ic~kms  187 (193)
T KOG0093|consen  178 LVDIICDKMS  187 (193)
T ss_pred             HHHHHHHHhh
Confidence            9998876553

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=100.00  E-value=1.1e-34  Score=205.48  Aligned_cols=162  Identities=28%  Similarity=0.574  Sum_probs=143.1

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA  110 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  110 (200)
                      ...+||+++|++|+|||||+++|..+.+...+.++.+..+. ..+.+ ++..+.+.+|||+|++++..++..+++++|++
T Consensus         3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~-~~~~~-~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~   80 (182)
T cd04172           3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEI-DTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV   80 (182)
T ss_pred             cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeE-EEEEE-CCEEEEEEEEECCCchhhHhhhhhhcCCCCEE
Confidence            46789999999999999999999999998888888876653 44555 45568999999999999999999999999999


Q ss_pred             EEEEeCCCHHhHHHH-HHHHHHHHHcCCCCCeEEEEEeCCCCCC------------CCcCCHHHHHHHHHHcCC-eEEEe
Q 028986          111 VVVYDITSPDSFNKA-QYWVKELQKHGSPDIVMALVGNKADLHE------------KREVPAQDGIEYAEKNGM-FFIET  176 (200)
Q Consensus       111 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~  176 (200)
                      |+|||++++.||+.+ ..|+..+.+.. ++.|+++|+||.|+.+            .+.++.+++.++++.+++ +|++|
T Consensus        81 ilvyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~  159 (182)
T cd04172          81 LICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC  159 (182)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEEC
Confidence            999999999999997 89999998764 5799999999999854            245889999999999996 89999


Q ss_pred             cCCCCCC-HHHHHHHHHHhh
Q 028986          177 SAKTADN-INQLFEVLITCT  195 (200)
Q Consensus       177 S~~~~~~-i~~~~~~i~~~~  195 (200)
                      ||+++.| |+++|..+++.+
T Consensus       160 SAk~~~n~v~~~F~~~~~~~  179 (182)
T cd04172         160 SALQSENSVRDIFHVATLAC  179 (182)
T ss_pred             CcCCCCCCHHHHHHHHHHHH
Confidence            9999998 999999998864

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=100.00  E-value=1.6e-34  Score=202.69  Aligned_cols=165  Identities=43%  Similarity=0.760  Sum_probs=147.8

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEE
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAV  111 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i  111 (200)
                      ..+||+++|++|+|||||++++.+..+...+.++.+.++....+... +..+.+.+||++|++.+...+..+++++|+++
T Consensus         2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~-~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i   80 (167)
T cd01867           2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELD-GKKIKLQIWDTAGQERFRTITTAYYRGAMGII   80 (167)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEEC-CEEEEEEEEeCCchHHHHHHHHHHhCCCCEEE
Confidence            46899999999999999999999999888888888877766666654 44589999999999999988999999999999


Q ss_pred             EEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Q 028986          112 VVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVL  191 (200)
Q Consensus       112 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i  191 (200)
                      +|||++++.+++.+..|+..+.+....++|+++|+||.|+.+.+.+..+++..++..++++++++|++++.|++++|++|
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i  160 (167)
T cd01867          81 LVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTL  160 (167)
T ss_pred             EEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999999987766789999999999998777777888888999999999999999999999999999


Q ss_pred             HHhhcc
Q 028986          192 ITCTSS  197 (200)
Q Consensus       192 ~~~~~~  197 (200)
                      ++++..
T Consensus       161 ~~~~~~  166 (167)
T cd01867         161 AKDIKK  166 (167)
T ss_pred             HHHHHh
Confidence            998754

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04127 Rab27A Rab27a subfamily

Probab=100.00  E-value=2.1e-34  Score=204.42  Aligned_cols=168  Identities=32%  Similarity=0.623  Sum_probs=148.7

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecC---------CcEEEEEEEeCCChhhhhhccc
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQD---------STTVKFEIWDTAGQERYAALAP  101 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~D~~g~~~~~~~~~  101 (200)
                      ++.+||+++|++|||||||+++|.+..+...+.++.+.++....+.+..         +..+.+.+||++|++++...+.
T Consensus         2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~   81 (180)
T cd04127           2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTT   81 (180)
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHH
Confidence            3568999999999999999999999999888888888777666555532         4458899999999999999999


Q ss_pred             ccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCC
Q 028986          102 LYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKT  180 (200)
Q Consensus       102 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~  180 (200)
                      .+++++|++++|||+++++++..+..|+..+.... ..+.|+++|+||+|+.+.+.+..+++.++++.++++++++||++
T Consensus        82 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~  161 (180)
T cd04127          82 AFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAAT  161 (180)
T ss_pred             HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCC
Confidence            99999999999999999999999999999987653 45789999999999987777888888999999999999999999


Q ss_pred             CCCHHHHHHHHHHhhccc
Q 028986          181 ADNINQLFEVLITCTSSY  198 (200)
Q Consensus       181 ~~~i~~~~~~i~~~~~~~  198 (200)
                      +.|++++|++|.+.+.++
T Consensus       162 ~~~v~~l~~~l~~~~~~~  179 (180)
T cd04127         162 GTNVEKAVERLLDLVMKR  179 (180)
T ss_pred             CCCHHHHHHHHHHHHHhh
Confidence            999999999999887654

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd04133 Rop_like Rop subfamily

Probab=100.00  E-value=2e-34  Score=203.06  Aligned_cols=160  Identities=36%  Similarity=0.668  Sum_probs=141.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV  113 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v  113 (200)
                      +||+++|.+++|||||+.++..+.+...+.++.+..+ ...+.+ ++..+.+.+|||+|++++..++..+++++|++|+|
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~-~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv   79 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSV-DGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   79 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEE-CCEEEEEEEEECCCCccccccchhhcCCCcEEEEE
Confidence            6899999999999999999999999888888887665 344555 55669999999999999999999999999999999


Q ss_pred             EeCCCHHhHHHH-HHHHHHHHHcCCCCCeEEEEEeCCCCCCCC----------cCCHHHHHHHHHHcCC-eEEEecCCCC
Q 028986          114 YDITSPDSFNKA-QYWVKELQKHGSPDIVMALVGNKADLHEKR----------EVPAQDGIEYAEKNGM-FFIETSAKTA  181 (200)
Q Consensus       114 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~----------~~~~~~~~~~~~~~~~-~~~~~S~~~~  181 (200)
                      ||++++.||+.+ ..|+..+.... .++|+++|+||+|+.+.+          .+..+++.++++..++ .+++|||++|
T Consensus        80 yd~~~~~Sf~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~  158 (176)
T cd04133          80 FSLISRASYENVLKKWVPELRHYA-PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQ  158 (176)
T ss_pred             EEcCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcc
Confidence            999999999998 78999997764 579999999999996542          4778899999999988 5999999999


Q ss_pred             CCHHHHHHHHHHhhc
Q 028986          182 DNINQLFEVLITCTS  196 (200)
Q Consensus       182 ~~i~~~~~~i~~~~~  196 (200)
                      .||+++|+.+++.+.
T Consensus       159 ~nV~~~F~~~~~~~~  173 (176)
T cd04133         159 QNVKAVFDAAIKVVL  173 (176)
T ss_pred             cCHHHHHHHHHHHHh
Confidence            999999999998764

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd04117 Rab15 Rab15 subfamily

Probab=100.00  E-value=3.2e-34  Score=199.98  Aligned_cols=160  Identities=40%  Similarity=0.693  Sum_probs=144.1

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV  113 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v  113 (200)
                      +||+++|++|+|||||++++..+.+.+.+.++.+.++....+... +..+.+.+||++|++.+...+..+++.+|++++|
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v   79 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVD-GIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLV   79 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEEC-CEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEE
Confidence            489999999999999999999999888778888877766666664 4558899999999999999999999999999999


Q ss_pred             EeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Q 028986          114 YDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT  193 (200)
Q Consensus       114 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~  193 (200)
                      ||++++++++.+..|+..+........|+++|+||.|+.+.+.+..++...+++.++++++++||++|.|++++|.+|.+
T Consensus        80 ~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~  159 (161)
T cd04117          80 YDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTE  159 (161)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHh
Confidence            99999999999999999988776567999999999999887778888999999999999999999999999999999986


Q ss_pred             h
Q 028986          194 C  194 (200)
Q Consensus       194 ~  194 (200)
                      .
T Consensus       160 ~  160 (161)
T cd04117         160 L  160 (161)
T ss_pred             h
Confidence            5

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=100.00  E-value=3.7e-34  Score=206.51  Aligned_cols=164  Identities=34%  Similarity=0.632  Sum_probs=145.9

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV  113 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v  113 (200)
                      +||+|+|++|||||||+++|.+..+...+.++.+.++....+.+.++..+.+.+||++|++.+...+..+++++|++|+|
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv   80 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV   80 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence            58999999999999999999999888888888888877777777546668999999999999999999999999999999


Q ss_pred             EeCCCHHhHHHHHHHHHHHHHcC----CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcC-CeEEEecCCCCCCHHHHH
Q 028986          114 YDITSPDSFNKAQYWVKELQKHG----SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNG-MFFIETSAKTADNINQLF  188 (200)
Q Consensus       114 ~d~~~~~s~~~~~~~~~~i~~~~----~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~S~~~~~~i~~~~  188 (200)
                      ||++++.+++.+..|+..+....    ..++|+++|+||+|+...+....+++.++++..+ ..++++||++|.|++++|
T Consensus        81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f  160 (201)
T cd04107          81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAM  160 (201)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHH
Confidence            99999999999999998876532    3578999999999997666778889999999988 689999999999999999


Q ss_pred             HHHHHhhcc
Q 028986          189 EVLITCTSS  197 (200)
Q Consensus       189 ~~i~~~~~~  197 (200)
                      ++|++.+.+
T Consensus       161 ~~l~~~l~~  169 (201)
T cd04107         161 RFLVKNILA  169 (201)
T ss_pred             HHHHHHHHH
Confidence            999988754

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=9.8e-35  Score=200.92  Aligned_cols=170  Identities=48%  Similarity=0.818  Sum_probs=161.0

Q ss_pred             CCCCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccC
Q 028986           27 SDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRG  106 (200)
Q Consensus        27 ~~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~  106 (200)
                      ++..++.+||+++|++++|||-|+.++..++|.....+|++.++....+.+ +++.+..+||||+|+++|+.....|++.
T Consensus         8 ~~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~v-d~k~vkaqIWDTAGQERyrAitSaYYrg   86 (222)
T KOG0087|consen    8 SEEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNV-DGKTVKAQIWDTAGQERYRAITSAYYRG   86 (222)
T ss_pred             ccccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceee-cCcEEEEeeecccchhhhccccchhhcc
Confidence            456789999999999999999999999999999999999999999988888 5666999999999999999999999999


Q ss_pred             ccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHH
Q 028986          107 AAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQ  186 (200)
Q Consensus       107 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~  186 (200)
                      +.++++|||++...+|+.+..|+.+++.+...++++++|+||+||.+.+.+..++.+.+++..+..++++||.++.|+++
T Consensus        87 AvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~  166 (222)
T KOG0087|consen   87 AVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEK  166 (222)
T ss_pred             cceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcc
Q 028986          187 LFEVLITCTSS  197 (200)
Q Consensus       187 ~~~~i~~~~~~  197 (200)
                      +|..++..+-.
T Consensus       167 aF~~~l~~I~~  177 (222)
T KOG0087|consen  167 AFERVLTEIYK  177 (222)
T ss_pred             HHHHHHHHHHH
Confidence            99988877644

>cd01865 Rab3 Rab3 subfamily

Probab=100.00  E-value=6.3e-34  Score=199.31  Aligned_cols=162  Identities=38%  Similarity=0.663  Sum_probs=144.0

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV  113 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v  113 (200)
                      +||+|+|++|||||||+++|.+..+...+.++.+.++....+.. ++..+.+.+||++|++.+...+..+++.+|++++|
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v   80 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFR-NDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILM   80 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEE-CCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEE
Confidence            68999999999999999999999987777777776665555544 45558999999999999999999999999999999


Q ss_pred             EeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Q 028986          114 YDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT  193 (200)
Q Consensus       114 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~  193 (200)
                      ||++++.+++.+..|+..+.+......|+++|+||+|+...+....++..+++..++++++++|++++.|++++|++|.+
T Consensus        81 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~  160 (165)
T cd01865          81 YDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVD  160 (165)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            99999999999999999998776668999999999999877777778888888888999999999999999999999998


Q ss_pred             hhc
Q 028986          194 CTS  196 (200)
Q Consensus       194 ~~~  196 (200)
                      .+.
T Consensus       161 ~~~  163 (165)
T cd01865         161 IIC  163 (165)
T ss_pred             HHH
Confidence            764

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=100.00  E-value=6e-34  Score=199.60  Aligned_cols=164  Identities=43%  Similarity=0.752  Sum_probs=146.1

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEE
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVV  112 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~  112 (200)
                      .+||+|+|++|||||||+++|.+..+...+.++.+.++....+... +..+.+.+||+||++.+...+..+++.+|++++
T Consensus         2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~   80 (166)
T cd01869           2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELD-GKTIKLQIWDTAGQERFRTITSSYYRGAHGIII   80 (166)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEEC-CEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEE
Confidence            4799999999999999999999988877777777777666666553 455889999999999999999999999999999


Q ss_pred             EEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Q 028986          113 VYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI  192 (200)
Q Consensus       113 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~  192 (200)
                      |||+++++++..+..|+..+......+.|+++|+||.|+.....+..+++..++...+++++++|+++|.|++++|.+|+
T Consensus        81 v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~  160 (166)
T cd01869          81 VYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMA  160 (166)
T ss_pred             EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHH
Confidence            99999999999999999999877656799999999999977777778888999999999999999999999999999999


Q ss_pred             Hhhcc
Q 028986          193 TCTSS  197 (200)
Q Consensus       193 ~~~~~  197 (200)
                      +.+.+
T Consensus       161 ~~~~~  165 (166)
T cd01869         161 REIKK  165 (166)
T ss_pred             HHHHh
Confidence            98764

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=100.00  E-value=1.4e-34  Score=195.77  Aligned_cols=168  Identities=35%  Similarity=0.673  Sum_probs=152.6

Q ss_pred             CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCcc
Q 028986           29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAA  108 (200)
Q Consensus        29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d  108 (200)
                      .+...+||+|+|++|+|||||++++.+.+|...+..+++.++..+.+.+. +..+.+++|||+|++++..+.-.+++.+|
T Consensus         5 ~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd-~~~vtlQiWDTAGQERFqsLg~aFYRgaD   83 (210)
T KOG0394|consen    5 RKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVD-DRSVTLQIWDTAGQERFQSLGVAFYRGAD   83 (210)
T ss_pred             CcccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEc-CeEEEEEEEecccHHHhhhcccceecCCc
Confidence            45667899999999999999999999999999999999999999999986 66699999999999999999999999999


Q ss_pred             EEEEEEeCCCHHhHHHHHHHHHHHHHcCC----CCCeEEEEEeCCCCCCC--CcCCHHHHHHHHHHc-CCeEEEecCCCC
Q 028986          109 VAVVVYDITSPDSFNKAQYWVKELQKHGS----PDIVMALVGNKADLHEK--REVPAQDGIEYAEKN-GMFFIETSAKTA  181 (200)
Q Consensus       109 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~p~iiv~nK~D~~~~--~~~~~~~~~~~~~~~-~~~~~~~S~~~~  181 (200)
                      ..+++||+.++.||+.+..|.+++.....    ..-|+||++||+|+...  ++++...++.+|... +++||++|||+.
T Consensus        84 cCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~  163 (210)
T KOG0394|consen   84 CCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEA  163 (210)
T ss_pred             eEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEeccccc
Confidence            99999999999999999999998765543    45789999999999653  788999999999876 679999999999


Q ss_pred             CCHHHHHHHHHHhhcc
Q 028986          182 DNINQLFEVLITCTSS  197 (200)
Q Consensus       182 ~~i~~~~~~i~~~~~~  197 (200)
                      .||.+.|+.+...+.+
T Consensus       164 ~NV~~AFe~ia~~aL~  179 (210)
T KOG0394|consen  164 TNVDEAFEEIARRALA  179 (210)
T ss_pred             ccHHHHHHHHHHHHHh
Confidence            9999999999887654

>cd04109 Rab28 Rab28 subfamily

Probab=100.00  E-value=6.8e-34  Score=207.08  Aligned_cols=164  Identities=34%  Similarity=0.548  Sum_probs=148.0

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV  113 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v  113 (200)
                      +||+++|++|||||||+++|.+..+...+.++.+.++....+.+.++..+.+.+||++|++.+..++..+++.+|++|+|
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV   80 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV   80 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence            58999999999999999999999988888888888887777777666668999999999999999999999999999999


Q ss_pred             EeCCCHHhHHHHHHHHHHHHHcC---CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Q 028986          114 YDITSPDSFNKAQYWVKELQKHG---SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEV  190 (200)
Q Consensus       114 ~d~~~~~s~~~~~~~~~~i~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~  190 (200)
                      ||++++++++.+..|+..+.+..   ..++|+++|+||.|+.+.+.+..++...+++.++++++++||++|.|++++|++
T Consensus        81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~  160 (215)
T cd04109          81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQ  160 (215)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence            99999999999999999987754   245789999999999877778888889999999999999999999999999999


Q ss_pred             HHHhhcc
Q 028986          191 LITCTSS  197 (200)
Q Consensus       191 i~~~~~~  197 (200)
                      |.+.+..
T Consensus       161 l~~~l~~  167 (215)
T cd04109         161 LAAELLG  167 (215)
T ss_pred             HHHHHHh
Confidence            9988754

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=100.00  E-value=4.4e-34  Score=201.27  Aligned_cols=163  Identities=31%  Similarity=0.503  Sum_probs=143.3

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEE
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVV  112 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~  112 (200)
                      .+||+|+|.+|||||||++++..+.+...+.++.+..+ ...+.+ ++..+.+.+||++|++++..++..+++.+|++++
T Consensus         2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~il   79 (172)
T cd04141           2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARI-DNEPALLDILDTAGQAEFTAMRDQYMRCGEGFII   79 (172)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEE-CCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEE
Confidence            47999999999999999999999998877777776555 334444 4555889999999999999999999999999999


Q ss_pred             EEeCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Q 028986          113 VYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVL  191 (200)
Q Consensus       113 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i  191 (200)
                      |||++++.+++.+..|+..+.+.. ..++|+++|+||+|+...+.++.++..++++.+++++++|||++|.|++++|++|
T Consensus        80 v~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l  159 (172)
T cd04141          80 CYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGL  159 (172)
T ss_pred             EEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHH
Confidence            999999999999998988887643 4679999999999998777788889999999999999999999999999999999


Q ss_pred             HHhhcc
Q 028986          192 ITCTSS  197 (200)
Q Consensus       192 ~~~~~~  197 (200)
                      ++.+.+
T Consensus       160 ~~~~~~  165 (172)
T cd04141         160 VREIRR  165 (172)
T ss_pred             HHHHHH
Confidence            987764

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd04131 Rnd Rnd subfamily

Probab=100.00  E-value=5.8e-34  Score=201.38  Aligned_cols=160  Identities=27%  Similarity=0.560  Sum_probs=140.1

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEE
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVV  112 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~  112 (200)
                      ++||+++|++|||||||+++|.++.+...+.++.+..+. ..+.+ ++..+.+.+|||+|++.+......+++++|++|+
T Consensus         1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~-~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~il   78 (178)
T cd04131           1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYT-ASFEI-DEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLI   78 (178)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEE-EEEEE-CCEEEEEEEEECCCchhhhhcchhhcCCCCEEEE
Confidence            478999999999999999999999988888888776653 44555 4456899999999999999999999999999999


Q ss_pred             EEeCCCHHhHHHH-HHHHHHHHHcCCCCCeEEEEEeCCCCCC------------CCcCCHHHHHHHHHHcCC-eEEEecC
Q 028986          113 VYDITSPDSFNKA-QYWVKELQKHGSPDIVMALVGNKADLHE------------KREVPAQDGIEYAEKNGM-FFIETSA  178 (200)
Q Consensus       113 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~S~  178 (200)
                      |||+++++||+.+ ..|+..+.+.. ++.|+++|+||.|+..            .+.+..+++.++++.+++ +|++|||
T Consensus        79 vfdit~~~Sf~~~~~~w~~~i~~~~-~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA  157 (178)
T cd04131          79 CFDISRPETLDSVLKKWRGEIQEFC-PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSA  157 (178)
T ss_pred             EEECCChhhHHHHHHHHHHHHHHHC-CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECcc
Confidence            9999999999996 89999998774 5799999999999854            245788999999999997 7999999


Q ss_pred             CCCCC-HHHHHHHHHHhh
Q 028986          179 KTADN-INQLFEVLITCT  195 (200)
Q Consensus       179 ~~~~~-i~~~~~~i~~~~  195 (200)
                      ++|.+ ++++|..+++..
T Consensus       158 ~~~~~~v~~~F~~~~~~~  175 (178)
T cd04131         158 FTSEKSVRDIFHVATMAC  175 (178)
T ss_pred             CcCCcCHHHHHHHHHHHH
Confidence            99995 999999998854

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04111 Rab39 Rab39 subfamily

Probab=100.00  E-value=1.2e-33  Score=205.00  Aligned_cols=166  Identities=38%  Similarity=0.687  Sum_probs=148.8

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEE
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVV  112 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~  112 (200)
                      .+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+.++..+.+++||++|++.+...+..+++++|++++
T Consensus         2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil   81 (211)
T cd04111           2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL   81 (211)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence            58999999999999999999999988887788888887777777766767899999999999999999999999999999


Q ss_pred             EEeCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Q 028986          113 VYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVL  191 (200)
Q Consensus       113 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i  191 (200)
                      |||++++.+++.+..|+..+.+.. ....|+++|+||.|+...+.+..++..++++.++++++++|++++.|++++|++|
T Consensus        82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l  161 (211)
T cd04111          82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELL  161 (211)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHH
Confidence            999999999999999999987654 3457889999999998777788888899999999999999999999999999999


Q ss_pred             HHhhccc
Q 028986          192 ITCTSSY  198 (200)
Q Consensus       192 ~~~~~~~  198 (200)
                      .+.+.++
T Consensus       162 ~~~~~~~  168 (211)
T cd04111         162 TQEIYER  168 (211)
T ss_pred             HHHHHHH
Confidence            9887654

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd01868 Rab11_like Rab11-like

Probab=100.00  E-value=1.9e-33  Score=196.88  Aligned_cols=163  Identities=48%  Similarity=0.825  Sum_probs=145.8

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEE
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAV  111 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i  111 (200)
                      ..+||+|+|+++||||||+++|.+..+...+.++.+.++....+... +..+.+.+||+||++.+...+..+++.+++++
T Consensus         2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i   80 (165)
T cd01868           2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQID-GKTIKAQIWDTAGQERYRAITSAYYRGAVGAL   80 (165)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEEC-CEEEEEEEEeCCChHHHHHHHHHHHCCCCEEE
Confidence            35799999999999999999999998887788888877777776664 44578999999999999999999999999999


Q ss_pred             EEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Q 028986          112 VVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVL  191 (200)
Q Consensus       112 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i  191 (200)
                      +|||++++.+++.+..|+..+.+....++|+++|+||.|+...++...++...++...+++++++||++|.|++++|++|
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  160 (165)
T cd01868          81 LVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQL  160 (165)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence            99999999999999999999988766679999999999998777778888889998889999999999999999999999


Q ss_pred             HHhh
Q 028986          192 ITCT  195 (200)
Q Consensus       192 ~~~~  195 (200)
                      ++.+
T Consensus       161 ~~~i  164 (165)
T cd01868         161 LTEI  164 (165)
T ss_pred             HHHh
Confidence            8765

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd01875 RhoG RhoG subfamily

Probab=100.00  E-value=1.8e-33  Score=201.31  Aligned_cols=163  Identities=30%  Similarity=0.566  Sum_probs=140.3

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEE
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAV  111 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i  111 (200)
                      ..+||+++|+.+||||||++++..+.+...+.++.+..+. ..+.+ ++..+.+.+|||+|++++..++..+++++|++|
T Consensus         2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~-~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~i   79 (191)
T cd01875           2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYS-AQTAV-DGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFI   79 (191)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeE-EEEEE-CCEEEEEEEEECCCchhhhhhhhhhccCCCEEE
Confidence            3589999999999999999999999988888888876553 34444 456689999999999999999999999999999


Q ss_pred             EEEeCCCHHhHHHHH-HHHHHHHHcCCCCCeEEEEEeCCCCCCC------------CcCCHHHHHHHHHHcC-CeEEEec
Q 028986          112 VVYDITSPDSFNKAQ-YWVKELQKHGSPDIVMALVGNKADLHEK------------REVPAQDGIEYAEKNG-MFFIETS  177 (200)
Q Consensus       112 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~S  177 (200)
                      +|||++++.+|+.+. .|+..+... ..++|+++|+||.|+.+.            ..+..+++.++++.++ ++++++|
T Consensus        80 lvydit~~~Sf~~~~~~w~~~i~~~-~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~S  158 (191)
T cd01875          80 ICFSIASPSSYENVRHKWHPEVCHH-CPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECS  158 (191)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeC
Confidence            999999999999996 688877765 357999999999999654            2356778889999888 5899999


Q ss_pred             CCCCCCHHHHHHHHHHhhcc
Q 028986          178 AKTADNINQLFEVLITCTSS  197 (200)
Q Consensus       178 ~~~~~~i~~~~~~i~~~~~~  197 (200)
                      |++|.|++++|++|++.+..
T Consensus       159 Ak~g~~v~e~f~~l~~~~~~  178 (191)
T cd01875         159 ALNQDGVKEVFAEAVRAVLN  178 (191)
T ss_pred             CCCCCCHHHHHHHHHHHHhc
Confidence            99999999999999987654

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=100.00  E-value=1.8e-33  Score=197.24  Aligned_cols=162  Identities=31%  Similarity=0.647  Sum_probs=144.1

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV  113 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v  113 (200)
                      +||+++|++|||||||+++|++..+...+.++.+.++....+... +..+.+++||++|++.+...+..+++.+|++|+|
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv   79 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVR-NKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLV   79 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEEC-CeEEEEEEEECCccHHHHHHHHHHhccCCEEEEE
Confidence            589999999999999999999999888888888888766666664 4558999999999999999999999999999999


Q ss_pred             EeCCCHHhHHHHHHHHHHHHHcCC-----CCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Q 028986          114 YDITSPDSFNKAQYWVKELQKHGS-----PDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF  188 (200)
Q Consensus       114 ~d~~~~~s~~~~~~~~~~i~~~~~-----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~  188 (200)
                      ||++++.+++.+..|+..+.....     ...|+++|+||+|+........++...++...+++++++|++++.|+.++|
T Consensus        80 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  159 (168)
T cd04119          80 YDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMF  159 (168)
T ss_pred             EECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHH
Confidence            999999999999999999877643     579999999999997666677888888888889999999999999999999


Q ss_pred             HHHHHhhc
Q 028986          189 EVLITCTS  196 (200)
Q Consensus       189 ~~i~~~~~  196 (200)
                      ++|++.+.
T Consensus       160 ~~l~~~l~  167 (168)
T cd04119         160 QTLFSSIV  167 (168)
T ss_pred             HHHHHHHh
Confidence            99998764

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=100.00  E-value=8.3e-34  Score=198.07  Aligned_cols=161  Identities=37%  Similarity=0.726  Sum_probs=149.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEEE
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVY  114 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~  114 (200)
                      ||+|+|+++||||||+++|.+..+...+.++.+.+.....+... +..+.+.+||++|++.+......++.++|++|+||
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~f   79 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSID-GKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVF   79 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEET-TEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccc
Confidence            79999999999999999999999988888888888888888775 56689999999999999888899999999999999


Q ss_pred             eCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHh
Q 028986          115 DITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLITC  194 (200)
Q Consensus       115 d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~  194 (200)
                      |+++++|++.+..|+..+......++|+++|+||.|+.+.+++..++++++++.++++++++|++++.++.++|..+++.
T Consensus        80 d~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~  159 (162)
T PF00071_consen   80 DVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRK  159 (162)
T ss_dssp             ETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            99999999999999999998877679999999999998888899999999999999999999999999999999999988


Q ss_pred             hc
Q 028986          195 TS  196 (200)
Q Consensus       195 ~~  196 (200)
                      +.
T Consensus       160 i~  161 (162)
T PF00071_consen  160 IL  161 (162)
T ss_dssp             HH
T ss_pred             Hh
Confidence            74

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=100.00  E-value=1.7e-33  Score=205.31  Aligned_cols=164  Identities=26%  Similarity=0.498  Sum_probs=143.7

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA  110 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  110 (200)
                      ...+||+++|+.|||||||+++|..+.|...+.++.+..+. ..+.+ ++..+.+.+|||+|++.+...+..+++++|++
T Consensus        11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~-~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~v   88 (232)
T cd04174          11 VMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLET-EEQRVELSLWDTSGSPYYDNVRPLCYSDSDAV   88 (232)
T ss_pred             eeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEE-CCEEEEEEEEeCCCchhhHHHHHHHcCCCcEE
Confidence            45789999999999999999999999998888888877664 34544 45568999999999999999999999999999


Q ss_pred             EEEEeCCCHHhHHHH-HHHHHHHHHcCCCCCeEEEEEeCCCCCC------------CCcCCHHHHHHHHHHcCC-eEEEe
Q 028986          111 VVVYDITSPDSFNKA-QYWVKELQKHGSPDIVMALVGNKADLHE------------KREVPAQDGIEYAEKNGM-FFIET  176 (200)
Q Consensus       111 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~  176 (200)
                      |+|||++++.+|+.+ ..|+..+.... ++.|+++|+||+|+..            .+.+..++++++++.+++ .|++|
T Consensus        89 IlVyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~Et  167 (232)
T cd04174          89 LLCFDISRPETVDSALKKWKAEIMDYC-PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLEC  167 (232)
T ss_pred             EEEEECCChHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEc
Confidence            999999999999974 89999998764 5789999999999854            256888999999999998 69999


Q ss_pred             cCCCCC-CHHHHHHHHHHhhcc
Q 028986          177 SAKTAD-NINQLFEVLITCTSS  197 (200)
Q Consensus       177 S~~~~~-~i~~~~~~i~~~~~~  197 (200)
                      ||++|. |++++|..++..+.+
T Consensus       168 SAktg~~~V~e~F~~~~~~~~~  189 (232)
T cd04174         168 SAFTSEKSIHSIFRSASLLCLN  189 (232)
T ss_pred             cCCcCCcCHHHHHHHHHHHHHH
Confidence            999997 899999999887654

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>PLN03110 Rab GTPase; Provisional

Probab=100.00  E-value=2.6e-33  Score=203.95  Aligned_cols=168  Identities=45%  Similarity=0.764  Sum_probs=150.9

Q ss_pred             CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCcc
Q 028986           29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAA  108 (200)
Q Consensus        29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d  108 (200)
                      +.++.+||+++|++|||||||+++|.+..+...+.++.+.++....+.+. +..+.+.+||++|++++...+..+++.++
T Consensus         8 ~~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~-~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~   86 (216)
T PLN03110          8 EYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVE-GKTVKAQIWDTAGQERYRAITSAYYRGAV   86 (216)
T ss_pred             ccCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEEC-CEEEEEEEEECCCcHHHHHHHHHHhCCCC
Confidence            34577899999999999999999999998877777888888877777664 45589999999999999999999999999


Q ss_pred             EEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Q 028986          109 VAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF  188 (200)
Q Consensus       109 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~  188 (200)
                      ++++|||++++.+++.+..|+..+......++|+++|+||+|+...+.+..++...++...+++++++||+++.|++++|
T Consensus        87 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf  166 (216)
T PLN03110         87 GALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAF  166 (216)
T ss_pred             EEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            99999999999999999999999988766789999999999998777788888899998899999999999999999999


Q ss_pred             HHHHHhhcc
Q 028986          189 EVLITCTSS  197 (200)
Q Consensus       189 ~~i~~~~~~  197 (200)
                      ++|++.+.+
T Consensus       167 ~~l~~~i~~  175 (216)
T PLN03110        167 QTILLEIYH  175 (216)
T ss_pred             HHHHHHHHH
Confidence            999988754

>cd01864 Rab19 Rab19 subfamily

Probab=100.00  E-value=3.5e-33  Score=195.53  Aligned_cols=163  Identities=42%  Similarity=0.761  Sum_probs=143.3

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEE
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAV  111 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i  111 (200)
                      +.+||+|+|++|+|||||+++|..+.+...+.++.+.++....+... +..+.+.+||+||++.+...+..+++.+|+++
T Consensus         2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~l   80 (165)
T cd01864           2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIE-GKRVKLQIWDTAGQERFRTITQSYYRSANGAI   80 (165)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEEC-CEEEEEEEEECCChHHHHHHHHHHhccCCEEE
Confidence            46899999999999999999999988877777777766666666553 44578999999999999999999999999999


Q ss_pred             EEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHHH
Q 028986          112 VVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGM-FFIETSAKTADNINQLFEV  190 (200)
Q Consensus       112 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~i~~~~~~  190 (200)
                      +|||++++.+++.+..|+..+......++|+++|+||+|+...++...+++..+++..++ .++++|+++|.|++++|++
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~  160 (165)
T cd01864          81 IAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLL  160 (165)
T ss_pred             EEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHH
Confidence            999999999999999999999877667899999999999987777778888888888876 6899999999999999999


Q ss_pred             HHHhh
Q 028986          191 LITCT  195 (200)
Q Consensus       191 i~~~~  195 (200)
                      |.+.+
T Consensus       161 l~~~l  165 (165)
T cd01864         161 MATEL  165 (165)
T ss_pred             HHHhC
Confidence            98753

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=100.00  E-value=3.8e-33  Score=203.36  Aligned_cols=166  Identities=28%  Similarity=0.507  Sum_probs=143.4

Q ss_pred             CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCcc
Q 028986           29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAA  108 (200)
Q Consensus        29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d  108 (200)
                      .....+||+++|++|||||||+++++.+.+...+.++.+.++....+...+ ..+.+.+||++|++.+...+..+++.+|
T Consensus         9 ~~~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~-~~~~l~i~Dt~G~~~~~~~~~~~~~~~~   87 (219)
T PLN03071          9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC-GKIRFYCWDTAGQEKFGGLRDGYYIHGQ   87 (219)
T ss_pred             cCCCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECC-eEEEEEEEECCCchhhhhhhHHHccccc
Confidence            347789999999999999999999999988888888888887766665543 4489999999999999999999999999


Q ss_pred             EEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Q 028986          109 VAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF  188 (200)
Q Consensus       109 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~  188 (200)
                      ++|+|||++++.+++.+..|+..+.+. ..+.|+++|+||+|+.. +.+..+++ .+++..++.++++||++|.|++++|
T Consensus        88 ~~ilvfD~~~~~s~~~i~~w~~~i~~~-~~~~piilvgNK~Dl~~-~~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f  164 (219)
T PLN03071         88 CAIIMFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPF  164 (219)
T ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHHh-CCCCcEEEEEEchhhhh-ccCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHH
Confidence            999999999999999999999999876 45799999999999854 33344444 7777788999999999999999999


Q ss_pred             HHHHHhhccc
Q 028986          189 EVLITCTSSY  198 (200)
Q Consensus       189 ~~i~~~~~~~  198 (200)
                      .+|++.+.+.
T Consensus       165 ~~l~~~~~~~  174 (219)
T PLN03071        165 LYLARKLAGD  174 (219)
T ss_pred             HHHHHHHHcC
Confidence            9999888643

>cd04113 Rab4 Rab4 subfamily

Probab=100.00  E-value=3.9e-33  Score=194.53  Aligned_cols=161  Identities=43%  Similarity=0.761  Sum_probs=144.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV  113 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v  113 (200)
                      +||+|+|+++||||||+++|.+..+...+.++.+.++....+.+. +..+.+.+||+||++.+...+..+++.+|++++|
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v   79 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVG-GKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLV   79 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEEC-CEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEE
Confidence            589999999999999999999998887777777777766666664 4458899999999999999999999999999999


Q ss_pred             EeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Q 028986          114 YDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT  193 (200)
Q Consensus       114 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~  193 (200)
                      ||++++.++..+..|+..+.....+++|+++|+||.|+.....+..+++..++...++.++++|++++.|++++|+++++
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~  159 (161)
T cd04113          80 YDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCAR  159 (161)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            99999999999999999988776788999999999999877778888889999999999999999999999999999987


Q ss_pred             hh
Q 028986          194 CT  195 (200)
Q Consensus       194 ~~  195 (200)
                      .+
T Consensus       160 ~~  161 (161)
T cd04113         160 SI  161 (161)
T ss_pred             hC
Confidence            63

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd04128 Spg1 Spg1p

Probab=100.00  E-value=2.9e-33  Score=198.56  Aligned_cols=162  Identities=27%  Similarity=0.550  Sum_probs=139.2

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV  113 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v  113 (200)
                      +||+++|+.|+|||||+++|..+.+...+.++.+.++....+.+. +..+.+.+||++|++.+...+..+++++|++++|
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~-~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv   79 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIR-GTEITFSIWDLGGQREFINMLPLVCNDAVAILFM   79 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEEC-CEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEE
Confidence            589999999999999999999999888888888888766666664 4568999999999999999999999999999999


Q ss_pred             EeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCC-----CcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Q 028986          114 YDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK-----REVPAQDGIEYAEKNGMFFIETSAKTADNINQLF  188 (200)
Q Consensus       114 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~-----~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~  188 (200)
                      ||++++.+++.+..|+..+.+......| ++|+||+|+...     .....++..++++..+++++++||++|.|++++|
T Consensus        80 ~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf  158 (182)
T cd04128          80 FDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIF  158 (182)
T ss_pred             EECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            9999999999999999998876555667 578999998531     1122456677888889999999999999999999


Q ss_pred             HHHHHhhcc
Q 028986          189 EVLITCTSS  197 (200)
Q Consensus       189 ~~i~~~~~~  197 (200)
                      +++.+.+.+
T Consensus       159 ~~l~~~l~~  167 (182)
T cd04128         159 KIVLAKAFD  167 (182)
T ss_pred             HHHHHHHHh
Confidence            999987654

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd04125 RabA_like RabA-like subfamily

Probab=100.00  E-value=4.3e-33  Score=199.05  Aligned_cols=164  Identities=34%  Similarity=0.655  Sum_probs=145.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV  113 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v  113 (200)
                      +||+|+|++|||||||+++|.+..+...+.++.+.++....+.+. +..+.+.+||++|++.+...+..+++.+|++++|
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv   79 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIE-NKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLV   79 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEEC-CEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEE
Confidence            589999999999999999999998877677788777766666654 4458899999999999999999999999999999


Q ss_pred             EeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Q 028986          114 YDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT  193 (200)
Q Consensus       114 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~  193 (200)
                      ||++++++++.+..|+..+.......+|+++|+||.|+.+...+..++...++...+++++++|++++.|++++|++|++
T Consensus        80 ~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~  159 (188)
T cd04125          80 YDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVK  159 (188)
T ss_pred             EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            99999999999999999998776667899999999999877777788888888888999999999999999999999999


Q ss_pred             hhccc
Q 028986          194 CTSSY  198 (200)
Q Consensus       194 ~~~~~  198 (200)
                      .+.++
T Consensus       160 ~~~~~  164 (188)
T cd04125         160 LIIKR  164 (188)
T ss_pred             HHHHH
Confidence            87653

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd01866 Rab2 Rab2 subfamily

Probab=100.00  E-value=5.9e-33  Score=194.95  Aligned_cols=165  Identities=39%  Similarity=0.772  Sum_probs=146.4

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEE
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAV  111 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i  111 (200)
                      ..+||+|+|++|+|||||++++.+..+...+.++.+.++....+... +....+.+||++|++++...+..+++.+|+++
T Consensus         3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il   81 (168)
T cd01866           3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID-GKQIKLQIWDTAGQESFRSITRSYYRGAAGAL   81 (168)
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEEC-CEEEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence            45899999999999999999999998877777777777766666654 45579999999999999988899999999999


Q ss_pred             EEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Q 028986          112 VVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVL  191 (200)
Q Consensus       112 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i  191 (200)
                      +|+|++++.+++.+..|+..+.....++.|+++|+||.|+.....+..++...++...++.++++|++.+.|++++|.++
T Consensus        82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~  161 (168)
T cd01866          82 LVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINT  161 (168)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999999988766789999999999998766777888888998899999999999999999999999


Q ss_pred             HHhhcc
Q 028986          192 ITCTSS  197 (200)
Q Consensus       192 ~~~~~~  197 (200)
                      .+.+.+
T Consensus       162 ~~~~~~  167 (168)
T cd01866         162 AKEIYE  167 (168)
T ss_pred             HHHHHh
Confidence            987743

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=4e-34  Score=189.91  Aligned_cols=166  Identities=39%  Similarity=0.709  Sum_probs=154.9

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA  110 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  110 (200)
                      .+.++++++|++-+|||||++.++.+++..-..|+.+.++..+.+....|..+++++|||+|+++++.....|++++-++
T Consensus         6 ~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgv   85 (213)
T KOG0091|consen    6 HYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGV   85 (213)
T ss_pred             EEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccce
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCHHhHHHHHHHHHHHHHcCC-CC-CeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Q 028986          111 VVVYDITSPDSFNKAQYWVKELQKHGS-PD-IVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF  188 (200)
Q Consensus       111 i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~-~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~  188 (200)
                      ++|||+++++||+.+..|+.....+.. +. +-+++|++|+|+...+++..+++++++..++..++++|+++|.|+++.|
T Consensus        86 llvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEAF  165 (213)
T KOG0091|consen   86 LLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEAF  165 (213)
T ss_pred             EEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHHH
Confidence            999999999999999999998766543 44 4478899999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhc
Q 028986          189 EVLITCTS  196 (200)
Q Consensus       189 ~~i~~~~~  196 (200)
                      ..|.+.+-
T Consensus       166 ~mlaqeIf  173 (213)
T KOG0091|consen  166 DMLAQEIF  173 (213)
T ss_pred             HHHHHHHH
Confidence            99988764

>cd04110 Rab35 Rab35 subfamily

Probab=100.00  E-value=6.8e-33  Score=199.56  Aligned_cols=165  Identities=37%  Similarity=0.689  Sum_probs=145.4

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA  110 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  110 (200)
                      +..++|+|+|++|||||||+++|.+..+...+.++.+.++....+.. ++..+.+.+||+||++.+...+..+++++|++
T Consensus         4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~i   82 (199)
T cd04110           4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEI-NGERVKLQIWDTAGQERFRTITSTYYRGTHGV   82 (199)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEE-CCEEEEEEEEeCCCchhHHHHHHHHhCCCcEE
Confidence            45789999999999999999999999887777778777776666655 34557899999999999999999999999999


Q ss_pred             EEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Q 028986          111 VVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEV  190 (200)
Q Consensus       111 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~  190 (200)
                      ++|||++++++++.+..|+..+... ....|+++|+||+|+.....+..++...++...+++++++|++++.|+.++|++
T Consensus        83 ilv~D~~~~~s~~~~~~~~~~i~~~-~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~  161 (199)
T cd04110          83 IVVYDVTNGESFVNVKRWLQEIEQN-CDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNC  161 (199)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHh-CCCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHH
Confidence            9999999999999999999998765 457899999999999877777778888898888999999999999999999999


Q ss_pred             HHHhhcc
Q 028986          191 LITCTSS  197 (200)
Q Consensus       191 i~~~~~~  197 (200)
                      |.+.+..
T Consensus       162 l~~~~~~  168 (199)
T cd04110         162 ITELVLR  168 (199)
T ss_pred             HHHHHHH
Confidence            9987754

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd04106 Rab23_lke Rab23-like subfamily

Probab=100.00  E-value=6.6e-33  Score=193.49  Aligned_cols=160  Identities=34%  Similarity=0.624  Sum_probs=141.9

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEec-CCcEEEEEEEeCCChhhhhhcccccccCccEEEE
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQ-DSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVV  112 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~  112 (200)
                      +||+++|++++|||||+++|+++.+...+.++.+.++....+.+. .+..+.+++||+||++++...+..+++.+|++++
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~   80 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence            589999999999999999999998877777888877766666664 1445899999999999999999999999999999


Q ss_pred             EEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Q 028986          113 VYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI  192 (200)
Q Consensus       113 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~  192 (200)
                      |||++++++++.+..|+..+.+. ..++|+++|+||.|+.....+..+++..+++..+++++++|++++.|++++|++|.
T Consensus        81 v~d~~~~~s~~~l~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  159 (162)
T cd04106          81 VFSTTDRESFEAIESWKEKVEAE-CGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLA  159 (162)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHh-CCCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            99999999999999999988765 45799999999999987777778888899999999999999999999999999997


Q ss_pred             Hh
Q 028986          193 TC  194 (200)
Q Consensus       193 ~~  194 (200)
                      +.
T Consensus       160 ~~  161 (162)
T cd04106         160 EK  161 (162)
T ss_pred             Hh
Confidence            64

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04136 Rap_like Rap-like subfamily

Probab=100.00  E-value=3.3e-33  Score=195.16  Aligned_cols=161  Identities=37%  Similarity=0.573  Sum_probs=137.9

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEE
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVV  112 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~  112 (200)
                      ++||+|+|++|||||||++++..+.+...+.++.+..+ ...+.+ ++..+.+.+||+||++++...+..+++.+|++++
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il   78 (163)
T cd04136           1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQIEV-DGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVL   78 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhE-EEEEEE-CCEEEEEEEEECCCccccchHHHHHhhcCCEEEE
Confidence            36999999999999999999999888776666665333 344444 4455889999999999999999999999999999


Q ss_pred             EEeCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Q 028986          113 VYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVL  191 (200)
Q Consensus       113 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i  191 (200)
                      |||++++.+++.+..|+..+.... ..+.|+++|+||+|+...+.+..++...+++.++++++++||+++.|+.++|++|
T Consensus        79 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  158 (163)
T cd04136          79 VYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADL  158 (163)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence            999999999999999998887653 4579999999999997766677777788888888999999999999999999999


Q ss_pred             HHhh
Q 028986          192 ITCT  195 (200)
Q Consensus       192 ~~~~  195 (200)
                      ++.+
T Consensus       159 ~~~~  162 (163)
T cd04136         159 VRQI  162 (163)
T ss_pred             HHhc
Confidence            8765

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=6.3e-34  Score=186.02  Aligned_cols=164  Identities=38%  Similarity=0.683  Sum_probs=153.5

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA  110 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  110 (200)
                      ..-++.+|+|++|+|||+|+.++..+.|...|..+++.++..+++.+. |..++++|||++|++.++.....|++..+++
T Consensus         6 dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~-G~~VkLqIwDtAGqErFrtitstyyrgthgv   84 (198)
T KOG0079|consen    6 DHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDIN-GDRVKLQIWDTAGQERFRTITSTYYRGTHGV   84 (198)
T ss_pred             HHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecC-CcEEEEEEeecccHHHHHHHHHHHccCCceE
Confidence            456788999999999999999999999999999999999999998885 7779999999999999999999999999999


Q ss_pred             EEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Q 028986          111 VVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEV  190 (200)
Q Consensus       111 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~  190 (200)
                      ++|||.++.+||.++.+|++.++..+. .+|-++|+||.|..+.+.+..+++..++...++.+|++|+++++|++..|.-
T Consensus        85 ~vVYDVTn~ESF~Nv~rWLeei~~ncd-sv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~c  163 (198)
T KOG0079|consen   85 IVVYDVTNGESFNNVKRWLEEIRNNCD-SVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMFHC  163 (198)
T ss_pred             EEEEECcchhhhHhHHHHHHHHHhcCc-cccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHHHH
Confidence            999999999999999999999998854 8889999999999999999999999999999999999999999999999998


Q ss_pred             HHHhhc
Q 028986          191 LITCTS  196 (200)
Q Consensus       191 i~~~~~  196 (200)
                      |.++..
T Consensus       164 it~qvl  169 (198)
T KOG0079|consen  164 ITKQVL  169 (198)
T ss_pred             HHHHHH
Confidence            887654

>cd04112 Rab26 Rab26 subfamily

Probab=100.00  E-value=7.3e-33  Score=198.27  Aligned_cols=164  Identities=40%  Similarity=0.706  Sum_probs=142.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcCCCCC-CCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEE
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRGQFDP-TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVV  112 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~  112 (200)
                      +||+|+|++|||||||+++|.+..+.. .+.++.+.++....+.+ ++..+.+.+|||||++.+...+..+++.+|++|+
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~   79 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTV-DGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLL   79 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEE-CCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEE
Confidence            589999999999999999999988753 45566666665555555 4455899999999999999888899999999999


Q ss_pred             EEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Q 028986          113 VYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI  192 (200)
Q Consensus       113 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~  192 (200)
                      |+|++++.+++.+..|+..+......++|+++|+||.|+...+.+..++...++..++++++++|+++|.|++++|.+|.
T Consensus        80 v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~  159 (191)
T cd04112          80 LYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVA  159 (191)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence            99999999999999999999887666899999999999977677777888889888999999999999999999999999


Q ss_pred             Hhhccc
Q 028986          193 TCTSSY  198 (200)
Q Consensus       193 ~~~~~~  198 (200)
                      +.+.+.
T Consensus       160 ~~~~~~  165 (191)
T cd04112         160 KELKHR  165 (191)
T ss_pred             HHHHHh
Confidence            888654

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd01874 Cdc42 Cdc42 subfamily

Probab=100.00  E-value=6.5e-33  Score=195.77  Aligned_cols=159  Identities=30%  Similarity=0.578  Sum_probs=137.1

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV  113 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v  113 (200)
                      +||+|+|.+|+|||||+++|..+.+...+.++.+..+. ..+.. ++..+++.+||++|++++...+..+++++|++|+|
T Consensus         2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv   79 (175)
T cd01874           2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMI-GGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC   79 (175)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEE-CCEEEEEEEEECCCccchhhhhhhhcccCCEEEEE
Confidence            68999999999999999999999987778888876664 34444 45568999999999999999999999999999999


Q ss_pred             EeCCCHHhHHHHH-HHHHHHHHcCCCCCeEEEEEeCCCCCCC------------CcCCHHHHHHHHHHcC-CeEEEecCC
Q 028986          114 YDITSPDSFNKAQ-YWVKELQKHGSPDIVMALVGNKADLHEK------------REVPAQDGIEYAEKNG-MFFIETSAK  179 (200)
Q Consensus       114 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~S~~  179 (200)
                      ||++++++++.+. .|+..+... ..++|+++|+||.|+...            +.+..+++.++++..+ +.+++|||+
T Consensus        80 ~d~~~~~s~~~~~~~w~~~i~~~-~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~  158 (175)
T cd01874          80 FSVVSPSSFENVKEKWVPEITHH-CPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSAL  158 (175)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCC
Confidence            9999999999996 698888765 357999999999998543            4567788888988887 689999999


Q ss_pred             CCCCHHHHHHHHHHhh
Q 028986          180 TADNINQLFEVLITCT  195 (200)
Q Consensus       180 ~~~~i~~~~~~i~~~~  195 (200)
                      +|.|++++|+.+++..
T Consensus       159 tg~~v~~~f~~~~~~~  174 (175)
T cd01874         159 TQKGLKNVFDEAILAA  174 (175)
T ss_pred             CCCCHHHHHHHHHHHh
Confidence            9999999999998753

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.3e-33  Score=185.56  Aligned_cols=169  Identities=40%  Similarity=0.707  Sum_probs=156.9

Q ss_pred             CCCCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccC
Q 028986           27 SDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRG  106 (200)
Q Consensus        27 ~~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~  106 (200)
                      ++..++-+|++++|+.|+|||.|++++...++......+++.++..+.+.+ .++.+++++|||.|+++++.....|++.
T Consensus         3 sEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinV-GgK~vKLQIWDTAGQErFRSVtRsYYRG   81 (214)
T KOG0086|consen    3 SETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNV-GGKTVKLQIWDTAGQERFRSVTRSYYRG   81 (214)
T ss_pred             chhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeee-cCcEEEEEEeecccHHHHHHHHHHHhcc
Confidence            345678899999999999999999999999999999999999998887777 4566999999999999999999999999


Q ss_pred             ccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHH
Q 028986          107 AAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQ  186 (200)
Q Consensus       107 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~  186 (200)
                      +-+.++|||++++++|+.+..|+..++....+++-+++++||.|+...+++...++..|+.+..+.+.++|+++|+|+++
T Consensus        82 AAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEE  161 (214)
T KOG0086|consen   82 AAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEE  161 (214)
T ss_pred             ccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHH
Confidence            99999999999999999999999999999889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhc
Q 028986          187 LFEVLITCTS  196 (200)
Q Consensus       187 ~~~~i~~~~~  196 (200)
                      +|-...+.+.
T Consensus       162 aFl~c~~tIl  171 (214)
T KOG0086|consen  162 AFLKCARTIL  171 (214)
T ss_pred             HHHHHHHHHH
Confidence            9977666553

>smart00175 RAB Rab subfamily of small GTPases

Probab=100.00  E-value=1.3e-32  Score=192.23  Aligned_cols=164  Identities=45%  Similarity=0.801  Sum_probs=145.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV  113 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v  113 (200)
                      +||+++|++|||||||+++|.+..+...+.++.+.++....+.. ++..+++.+||+||++.+...+..+++.+|++++|
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv   79 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEV-DGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLV   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEE-CCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEE
Confidence            58999999999999999999998887777777777776666665 44447899999999999999999999999999999


Q ss_pred             EeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Q 028986          114 YDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT  193 (200)
Q Consensus       114 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~  193 (200)
                      ||++++.+++.+..|+..+......++|+++|+||+|+....+...+.+.+++..++++++++|++++.|+++++++|.+
T Consensus        80 ~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~  159 (164)
T smart00175       80 YDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAR  159 (164)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            99999999999999999988776678999999999998776677788888899888999999999999999999999999


Q ss_pred             hhccc
Q 028986          194 CTSSY  198 (200)
Q Consensus       194 ~~~~~  198 (200)
                      .+.++
T Consensus       160 ~~~~~  164 (164)
T smart00175      160 EILKR  164 (164)
T ss_pred             HHhhC
Confidence            88653

Rab GTPases are implicated in vesicle trafficking.

>PTZ00369 Ras-like protein; Provisional

Probab=100.00  E-value=6.5e-33  Score=198.20  Aligned_cols=165  Identities=34%  Similarity=0.540  Sum_probs=142.5

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEE
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAV  111 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i  111 (200)
                      ..+||+|+|++|+|||||++++.++.+...+.++.+..+ ...+.+. +..+.+.+|||+|++++..++..+++.+|+++
T Consensus         4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~ii   81 (189)
T PTZ00369          4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVID-EETCLLDILDTAGQEEYSAMRDQYMRTGQGFL   81 (189)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEEC-CEEEEEEEEeCCCCccchhhHHHHhhcCCEEE
Confidence            468999999999999999999999888777777776655 4444553 45588999999999999999999999999999


Q ss_pred             EEEeCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Q 028986          112 VVYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEV  190 (200)
Q Consensus       112 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~  190 (200)
                      +|||++++++++.+..|+..+.+.. ..++|+++|+||+|+.....+..++...+++.++++++++||+++.|++++|.+
T Consensus        82 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~  161 (189)
T PTZ00369         82 CVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYE  161 (189)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHH
Confidence            9999999999999999999887653 457899999999999776667777888888888999999999999999999999


Q ss_pred             HHHhhccc
Q 028986          191 LITCTSSY  198 (200)
Q Consensus       191 i~~~~~~~  198 (200)
                      |++.+.+.
T Consensus       162 l~~~l~~~  169 (189)
T PTZ00369        162 LVREIRKY  169 (189)
T ss_pred             HHHHHHHH
Confidence            99877653

>cd04144 Ras2 Ras2 subfamily

Probab=100.00  E-value=4.6e-33  Score=199.12  Aligned_cols=162  Identities=34%  Similarity=0.551  Sum_probs=139.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEEE
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVY  114 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~  114 (200)
                      ||+|+|.+|||||||+++|..+.+...+.++.+..+. ..+.+ ++..+.+++|||+|++++...+..+++.+|++|+||
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~-~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~   78 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYR-KQVVV-DGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVY   78 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEE-EEEEE-CCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEE
Confidence            5899999999999999999998887777777665543 33444 445578999999999999999999999999999999


Q ss_pred             eCCCHHhHHHHHHHHHHHHHcC---CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Q 028986          115 DITSPDSFNKAQYWVKELQKHG---SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVL  191 (200)
Q Consensus       115 d~~~~~s~~~~~~~~~~i~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i  191 (200)
                      |++++.+++.+..|+..+....   ..+.|+++|+||+|+...+.+..++..+++..++++++++||++|.|++++|++|
T Consensus        79 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l  158 (190)
T cd04144          79 SITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTL  158 (190)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHH
Confidence            9999999999999998886653   2578999999999998777778888888888889999999999999999999999


Q ss_pred             HHhhccc
Q 028986          192 ITCTSSY  198 (200)
Q Consensus       192 ~~~~~~~  198 (200)
                      ++.+.+.
T Consensus       159 ~~~l~~~  165 (190)
T cd04144         159 VRALRQQ  165 (190)
T ss_pred             HHHHHHh
Confidence            9887654

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04175 Rap1 Rap1 subgroup

Probab=100.00  E-value=7.1e-33  Score=193.77  Aligned_cols=162  Identities=36%  Similarity=0.579  Sum_probs=139.3

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEE
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVV  112 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~  112 (200)
                      ++||+++|.+|||||||++++..+.+...+.++.+..+ ...+.. ++..+.+.+|||||++.+...+..+++.+|++++
T Consensus         1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~il   78 (164)
T cd04175           1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEV-DGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVL   78 (164)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEE-CCEEEEEEEEECCCcccchhHHHHHHhhCCEEEE
Confidence            46899999999999999999999887776777766554 344444 3455889999999999999999999999999999


Q ss_pred             EEeCCCHHhHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Q 028986          113 VYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVL  191 (200)
Q Consensus       113 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i  191 (200)
                      |||.+++.+++.+..|+..+... ...+.|+++|+||+|+.....+..++...+++.++++++++||+++.|++++|.+|
T Consensus        79 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l  158 (164)
T cd04175          79 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDL  158 (164)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHH
Confidence            99999999999999999888664 35679999999999998776677777788888889999999999999999999999


Q ss_pred             HHhhc
Q 028986          192 ITCTS  196 (200)
Q Consensus       192 ~~~~~  196 (200)
                      .+++.
T Consensus       159 ~~~l~  163 (164)
T cd04175         159 VRQIN  163 (164)
T ss_pred             HHHhh
Confidence            98764

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=100.00  E-value=2.8e-32  Score=190.73  Aligned_cols=161  Identities=30%  Similarity=0.525  Sum_probs=141.2

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcC--CCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEE
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRG--QFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAV  111 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i  111 (200)
                      +||+++|++|||||||+++|...  .+...+.++.+.++....+....+..+.+.+||+||++.+...+..+++.+|+++
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence            58999999999999999999865  5667777888878777777776667799999999999998888899999999999


Q ss_pred             EEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Q 028986          112 VVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVL  191 (200)
Q Consensus       112 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i  191 (200)
                      +|||++++++++.+..|+..+.... .+.|+++|+||+|+....++...+...+....+++++++|++++.|++++|++|
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  159 (164)
T cd04101          81 LVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESL  159 (164)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHH
Confidence            9999999999999999999988764 578999999999997776667767677777788999999999999999999999


Q ss_pred             HHhh
Q 028986          192 ITCT  195 (200)
Q Consensus       192 ~~~~  195 (200)
                      .+.+
T Consensus       160 ~~~~  163 (164)
T cd04101         160 ARAF  163 (164)
T ss_pred             HHHh
Confidence            8875

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=100.00  E-value=3.1e-32  Score=191.52  Aligned_cols=163  Identities=31%  Similarity=0.607  Sum_probs=140.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEEE
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVY  114 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~  114 (200)
                      ||+++|++|||||||+++|.++.+...+.++.+.++....+.+. +..+.+.+||+||++++...+..+++.+|++++||
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~   80 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEIL-GVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVF   80 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEEC-CEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEE
Confidence            79999999999999999999999988888888888766666664 55589999999999999999999999999999999


Q ss_pred             eCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCc--CCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Q 028986          115 DITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKRE--VPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVL  191 (200)
Q Consensus       115 d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i  191 (200)
                      |++++.+++.+..|+..+.+.. ....|+++|+||.|+.....  ...+++..++.+++++++++||+++.|+.++|+.|
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l  160 (170)
T cd04108          81 DLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRV  160 (170)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence            9999999999999999876543 34578999999999865433  34566677888888999999999999999999999


Q ss_pred             HHhhccc
Q 028986          192 ITCTSSY  198 (200)
Q Consensus       192 ~~~~~~~  198 (200)
                      .+.+.+.
T Consensus       161 ~~~~~~~  167 (170)
T cd04108         161 AALTFEL  167 (170)
T ss_pred             HHHHHHc
Confidence            9987653

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd01860 Rab5_related Rab5-related subfamily

Probab=100.00  E-value=3.5e-32  Score=190.02  Aligned_cols=162  Identities=62%  Similarity=1.015  Sum_probs=144.4

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEE
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVV  112 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~  112 (200)
                      ++||+|+|+++||||||+++|.+..+.+...++.+..+....+.+. +..+.+.+||+||++++...+..+++.+|++++
T Consensus         1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   79 (163)
T cd01860           1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLD-DTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIV   79 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEEC-CEEEEEEEEeCCchHHHHHHHHHHhccCCEEEE
Confidence            4799999999999999999999998877677777777766666664 455899999999999998888889999999999


Q ss_pred             EEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Q 028986          113 VYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI  192 (200)
Q Consensus       113 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~  192 (200)
                      |+|++++++++.+..|+..+.......+|+++++||.|+........++...++...++.++++|+++|.|+.++|++|+
T Consensus        80 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  159 (163)
T cd01860          80 VYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIA  159 (163)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence            99999999999999999999887667899999999999876666777888888988899999999999999999999999


Q ss_pred             Hhh
Q 028986          193 TCT  195 (200)
Q Consensus       193 ~~~  195 (200)
                      +.+
T Consensus       160 ~~l  162 (163)
T cd01860         160 KKL  162 (163)
T ss_pred             HHh
Confidence            876

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd01861 Rab6 Rab6 subfamily

Probab=100.00  E-value=3.3e-32  Score=189.76  Aligned_cols=161  Identities=43%  Similarity=0.786  Sum_probs=142.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV  113 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v  113 (200)
                      +||+++|+++||||||+++|++..+...+.++.+.++....+... +..+++++||+||++.+...+..+++.+|++++|
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v   79 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLE-DKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   79 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEEC-CEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence            489999999999999999999998877777778877777777664 4447899999999999999999999999999999


Q ss_pred             EeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Q 028986          114 YDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT  193 (200)
Q Consensus       114 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~  193 (200)
                      ||++++.+++.+..|+..+......+.|+++|+||+|+........++...+++..+++++++|++++.|+++++++|.+
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~  159 (161)
T cd01861          80 YDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIAS  159 (161)
T ss_pred             EECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            99999999999999999987665557999999999999766677788888888888999999999999999999999987


Q ss_pred             hh
Q 028986          194 CT  195 (200)
Q Consensus       194 ~~  195 (200)
                      .+
T Consensus       160 ~l  161 (161)
T cd01861         160 AL  161 (161)
T ss_pred             hC
Confidence            53

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=2.4e-32  Score=191.46  Aligned_cols=160  Identities=31%  Similarity=0.581  Sum_probs=137.1

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV  113 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v  113 (200)
                      +||+++|++|||||||+++++.+.+...+.++.+.+.....+.. ++..+.+.+||++|++.+...+..++..+|++|+|
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v   79 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHT-NRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIM   79 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEE-CCEEEEEEEEECCCChhhccccHHHhcCCCEEEEE
Confidence            58999999999999999999988877777777777766555554 45568999999999999888888999999999999


Q ss_pred             EeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Q 028986          114 YDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT  193 (200)
Q Consensus       114 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~  193 (200)
                      ||++++.+++.+..|+..+..... ++|+++|+||+|+... ... .+..++++..+++++++||++|.|++++|++|++
T Consensus        80 ~d~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~nK~Dl~~~-~~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~  156 (166)
T cd00877          80 FDVTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGNKVDIKDR-KVK-AKQITFHRKKNLQYYEISAKSNYNFEKPFLWLAR  156 (166)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhcccc-cCC-HHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHH
Confidence            999999999999999999987754 8999999999998633 333 3345677777889999999999999999999998


Q ss_pred             hhcc
Q 028986          194 CTSS  197 (200)
Q Consensus       194 ~~~~  197 (200)
                      .+.+
T Consensus       157 ~~~~  160 (166)
T cd00877         157 KLLG  160 (166)
T ss_pred             HHHh
Confidence            8764

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>PLN03108 Rab family protein; Provisional

Probab=100.00  E-value=3e-32  Score=197.62  Aligned_cols=166  Identities=37%  Similarity=0.767  Sum_probs=147.1

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA  110 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  110 (200)
                      .+.+||+|+|++|+|||||+++|.+..+.+.+.++.+.++....+.+. +..+.+.+||++|++.+...+..+++.+|++
T Consensus         4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~-~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~   82 (210)
T PLN03108          4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID-NKPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (210)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEEC-CEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence            456899999999999999999999998877777788877766666664 4457899999999999998889999999999


Q ss_pred             EEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Q 028986          111 VVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEV  190 (200)
Q Consensus       111 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~  190 (200)
                      ++|||++++.+++.+..|+..+........|+++|+||+|+...+.+..++..++++.++++++++|++++.|++++|++
T Consensus        83 vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~  162 (210)
T PLN03108         83 LLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK  162 (210)
T ss_pred             EEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999998887766678999999999999877778888999999999999999999999999999999


Q ss_pred             HHHhhcc
Q 028986          191 LITCTSS  197 (200)
Q Consensus       191 i~~~~~~  197 (200)
                      +++.+.+
T Consensus       163 l~~~~~~  169 (210)
T PLN03108        163 TAAKIYK  169 (210)
T ss_pred             HHHHHHH
Confidence            9887753

>cd04116 Rab9 Rab9 subfamily

Probab=100.00  E-value=4.2e-32  Score=190.94  Aligned_cols=163  Identities=34%  Similarity=0.633  Sum_probs=140.6

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA  110 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  110 (200)
                      ...+||+++|+++||||||+++|.++.+.+.+.++.+.++....+.. ++..+.+.+||+||++++...+..+++.+|++
T Consensus         3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~   81 (170)
T cd04116           3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEV-DGHFVTLQIWDTAGQERFRSLRTPFYRGSDCC   81 (170)
T ss_pred             ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEE-CCeEEEEEEEeCCChHHHHHhHHHHhcCCCEE
Confidence            46789999999999999999999999888777777777766666655 45558999999999999999999999999999


Q ss_pred             EEEEeCCCHHhHHHHHHHHHHHHHcC----CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCC-eEEEecCCCCCCHH
Q 028986          111 VVVYDITSPDSFNKAQYWVKELQKHG----SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGM-FFIETSAKTADNIN  185 (200)
Q Consensus       111 i~v~d~~~~~s~~~~~~~~~~i~~~~----~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~i~  185 (200)
                      ++|||++++++++.+..|+..+....    ..++|+++|+||.|+. .+.+..+++.++++.++. +++++||+++.|+.
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~  160 (170)
T cd04116          82 LLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP-ERQVSTEEAQAWCRENGDYPYFETSAKDATNVA  160 (170)
T ss_pred             EEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc-ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHH
Confidence            99999999999999999998876543    2568999999999986 455677888899988874 79999999999999


Q ss_pred             HHHHHHHHhh
Q 028986          186 QLFEVLITCT  195 (200)
Q Consensus       186 ~~~~~i~~~~  195 (200)
                      ++|+++++.+
T Consensus       161 ~~~~~~~~~~  170 (170)
T cd04116         161 AAFEEAVRRV  170 (170)
T ss_pred             HHHHHHHhhC
Confidence            9999998753

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04124 RabL2 RabL2 subfamily

Probab=100.00  E-value=3.2e-32  Score=189.94  Aligned_cols=161  Identities=33%  Similarity=0.577  Sum_probs=136.6

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV  113 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v  113 (200)
                      +||+++|++|||||||+++|.+..+.+...++.+.+.......+ ++..+.+.+|||+|++.+...+..+++.+|++++|
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v   79 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKF-EGKTILVDFWDTAGQERFQTMHASYYHKAHACILV   79 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEE-CCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEE
Confidence            58999999999999999999999887777666666555544444 45568999999999999999999999999999999


Q ss_pred             EeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Q 028986          114 YDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT  193 (200)
Q Consensus       114 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~  193 (200)
                      ||++++.+++.+..|+..+.+. ..+.|+++|+||+|+...   ...+...++...+++++++||+++.|++++|+.+++
T Consensus        80 ~d~~~~~s~~~~~~~~~~i~~~-~~~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~  155 (161)
T cd04124          80 FDVTRKITYKNLSKWYEELREY-RPEIPCIVVANKIDLDPS---VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIK  155 (161)
T ss_pred             EECCCHHHHHHHHHHHHHHHHh-CCCCcEEEEEECccCchh---HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            9999999999999999998765 457899999999998432   134455677777899999999999999999999999


Q ss_pred             hhcccC
Q 028986          194 CTSSYC  199 (200)
Q Consensus       194 ~~~~~~  199 (200)
                      .+.+++
T Consensus       156 ~~~~~~  161 (161)
T cd04124         156 LAVSYK  161 (161)
T ss_pred             HHHhcC
Confidence            887763

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd04126 Rab20 Rab20 subfamily

Probab=100.00  E-value=2e-32  Score=198.74  Aligned_cols=158  Identities=35%  Similarity=0.603  Sum_probs=135.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV  113 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v  113 (200)
                      +||+|+|.+++|||||+++|..+.+.. +.++.+..+.....     ..+.+.+||++|++.+...+..+++.+|++|+|
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~-----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV   74 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW-----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILT   74 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe-----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEE
Confidence            589999999999999999999998864 45666655543332     237899999999999999999999999999999


Q ss_pred             EeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCC-------------------CCcCCHHHHHHHHHHcC----
Q 028986          114 YDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE-------------------KREVPAQDGIEYAEKNG----  170 (200)
Q Consensus       114 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~-------------------~~~~~~~~~~~~~~~~~----  170 (200)
                      ||++++.+|+.+..|+..+.+....++|+++|+||+|+..                   .+.+..+++.+++++.+    
T Consensus        75 ~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~  154 (220)
T cd04126          75 YDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKM  154 (220)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCcccc
Confidence            9999999999998888877766566799999999999965                   56788899999998876    


Q ss_pred             ----------CeEEEecCCCCCCHHHHHHHHHHhhcc
Q 028986          171 ----------MFFIETSAKTADNINQLFEVLITCTSS  197 (200)
Q Consensus       171 ----------~~~~~~S~~~~~~i~~~~~~i~~~~~~  197 (200)
                                ++|++|||++|.||+++|..+++.+..
T Consensus       155 ~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~  191 (220)
T cd04126         155 LDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLP  191 (220)
T ss_pred             ccccccccccceEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence                      689999999999999999999987653

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd04176 Rap2 Rap2 subgroup

Probab=100.00  E-value=2.3e-32  Score=191.01  Aligned_cols=161  Identities=34%  Similarity=0.562  Sum_probs=137.9

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEE
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVV  112 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~  112 (200)
                      ++||+++|.+|+|||||++++..+.+.+.+.++.+ ......+.. ++..+.+++||++|++++..++..+++++|++++
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~   78 (163)
T cd04176           1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEV-DSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIV   78 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEE-CCEEEEEEEEECCCcccccchHHHHHhhCCEEEE
Confidence            47899999999999999999999988777666654 333445555 4555789999999999999999999999999999


Q ss_pred             EEeCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Q 028986          113 VYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVL  191 (200)
Q Consensus       113 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i  191 (200)
                      |||++++.+++.+..|+..+.+.. ..++|+++|+||+|+.....+..++...++...+++++++||+++.|+.++|.++
T Consensus        79 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  158 (163)
T cd04176          79 VYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEI  158 (163)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHH
Confidence            999999999999999998887653 4689999999999997666666677788888888999999999999999999999


Q ss_pred             HHhh
Q 028986          192 ITCT  195 (200)
Q Consensus       192 ~~~~  195 (200)
                      .+.+
T Consensus       159 ~~~l  162 (163)
T cd04176         159 VRQM  162 (163)
T ss_pred             HHhc
Confidence            8765

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=100.00  E-value=3.8e-32  Score=191.18  Aligned_cols=163  Identities=36%  Similarity=0.693  Sum_probs=142.9

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhh-hcccccccCccEEE
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYA-ALAPLYYRGAAVAV  111 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-~~~~~~~~~~d~~i  111 (200)
                      .+||+++|++|||||||+++++...+...+.++.+.++....+... +..+.+.+||++|++++. ..+..+++++|+++
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i   80 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEID-GERIKVQLWDTAGQERFRKSMVQHYYRNVHAVV   80 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEEC-CeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEE
Confidence            4799999999999999999999988877777777777766666664 445899999999998876 57888899999999


Q ss_pred             EEEeCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCC---CCCHHHH
Q 028986          112 VVYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKT---ADNINQL  187 (200)
Q Consensus       112 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~---~~~i~~~  187 (200)
                      +|||++++.++..+..|+..+.... ..++|+++|+||+|+...+++..++..++++..+++++++||++   +.++.++
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~  160 (170)
T cd04115          81 FVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAI  160 (170)
T ss_pred             EEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHH
Confidence            9999999999999999999887654 46799999999999988878888888899999999999999999   8999999


Q ss_pred             HHHHHHhhc
Q 028986          188 FEVLITCTS  196 (200)
Q Consensus       188 ~~~i~~~~~  196 (200)
                      |..+++.++
T Consensus       161 f~~l~~~~~  169 (170)
T cd04115         161 FMTLAHKLK  169 (170)
T ss_pred             HHHHHHHhh
Confidence            999998764

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04140 ARHI_like ARHI subfamily

Probab=100.00  E-value=2.4e-32  Score=191.27  Aligned_cols=159  Identities=33%  Similarity=0.511  Sum_probs=135.6

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV  113 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v  113 (200)
                      +||+++|++|||||||+++++++.+...+.++.+..+ ...+.. +...+.+.+||++|++++...+..+++.+|++++|
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   79 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISC-SKNICTLQITDTTGSHQFPAMQRLSISKGHAFILV   79 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEE-CCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEE
Confidence            6899999999999999999999988776666665544 333333 33458899999999999888888889999999999


Q ss_pred             EeCCCHHhHHHHHHHHHHHHHcC---CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Q 028986          114 YDITSPDSFNKAQYWVKELQKHG---SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEV  190 (200)
Q Consensus       114 ~d~~~~~s~~~~~~~~~~i~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~  190 (200)
                      ||++++++++.+..|+..+.+..   ..++|+++|+||+|+...+++..+++..++..+++.++++||++|.|++++|++
T Consensus        80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~  159 (165)
T cd04140          80 YSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQE  159 (165)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHH
Confidence            99999999999999988776643   257999999999999776677777888888888999999999999999999999


Q ss_pred             HHHh
Q 028986          191 LITC  194 (200)
Q Consensus       191 i~~~  194 (200)
                      |++.
T Consensus       160 l~~~  163 (165)
T cd04140         160 LLNL  163 (165)
T ss_pred             HHhc
Confidence            9864

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=100.00  E-value=4.9e-32  Score=196.76  Aligned_cols=162  Identities=24%  Similarity=0.545  Sum_probs=138.9

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEE
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVV  112 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~  112 (200)
                      ++||+|+|++|||||||+++|..+.+...+.++.+..+. ..+.+ ++..+.+.+|||+|++.+..++..+++.+|++|+
T Consensus         1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~-~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~ill   78 (222)
T cd04173           1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEI-DKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLI   78 (222)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEE-CCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEE
Confidence            378999999999999999999999998888888877664 34444 4556899999999999999999999999999999


Q ss_pred             EEeCCCHHhHHHH-HHHHHHHHHcCCCCCeEEEEEeCCCCCCC------------CcCCHHHHHHHHHHcCC-eEEEecC
Q 028986          113 VYDITSPDSFNKA-QYWVKELQKHGSPDIVMALVGNKADLHEK------------REVPAQDGIEYAEKNGM-FFIETSA  178 (200)
Q Consensus       113 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~S~  178 (200)
                      |||++++++++.+ ..|...+... .+++|+++|+||+|+...            ..++.++...++++.++ +|+||||
T Consensus        79 vfdis~~~Sf~~i~~~w~~~~~~~-~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SA  157 (222)
T cd04173          79 CFDISRPETLDSVLKKWQGETQEF-CPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSS  157 (222)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCC
Confidence            9999999999998 5677776655 567999999999999542            23677889999999996 8999999


Q ss_pred             CCCCC-HHHHHHHHHHhhcc
Q 028986          179 KTADN-INQLFEVLITCTSS  197 (200)
Q Consensus       179 ~~~~~-i~~~~~~i~~~~~~  197 (200)
                      +++.+ |+++|..++.....
T Consensus       158 k~~~~~V~~~F~~~~~~~~~  177 (222)
T cd04173         158 RSSERSVRDVFHVATVASLG  177 (222)
T ss_pred             CcCCcCHHHHHHHHHHHHHh
Confidence            99885 99999999886544

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd01871 Rac1_like Rac1-like subfamily

Probab=100.00  E-value=6.1e-32  Score=190.63  Aligned_cols=158  Identities=32%  Similarity=0.627  Sum_probs=135.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV  113 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v  113 (200)
                      +||+|+|++|||||||+.++..+.+...+.++....+ ...+.+ ++..+.+.+|||+|++.+...+..+++++|++|+|
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv   79 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMV-DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLIC   79 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeee-EEEEEE-CCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEE
Confidence            6899999999999999999999988777777765444 334444 55668999999999999999999999999999999


Q ss_pred             EeCCCHHhHHHHH-HHHHHHHHcCCCCCeEEEEEeCCCCCCC------------CcCCHHHHHHHHHHcCC-eEEEecCC
Q 028986          114 YDITSPDSFNKAQ-YWVKELQKHGSPDIVMALVGNKADLHEK------------REVPAQDGIEYAEKNGM-FFIETSAK  179 (200)
Q Consensus       114 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~S~~  179 (200)
                      ||++++++++.+. .|+..+... ..++|+++|+||.|+.+.            +.+..+++.+++++++. ++++|||+
T Consensus        80 ~d~~~~~sf~~~~~~~~~~~~~~-~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~  158 (174)
T cd01871          80 FSLVSPASFENVRAKWYPEVRHH-CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL  158 (174)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeccc
Confidence            9999999999984 688887765 457999999999999543            24678888999998885 89999999


Q ss_pred             CCCCHHHHHHHHHHh
Q 028986          180 TADNINQLFEVLITC  194 (200)
Q Consensus       180 ~~~~i~~~~~~i~~~  194 (200)
                      +|.|++++|+.+++.
T Consensus       159 ~~~~i~~~f~~l~~~  173 (174)
T cd01871         159 TQKGLKTVFDEAIRA  173 (174)
T ss_pred             ccCCHHHHHHHHHHh
Confidence            999999999999864

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.2e-33  Score=182.57  Aligned_cols=167  Identities=41%  Similarity=0.770  Sum_probs=155.6

Q ss_pred             CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCcc
Q 028986           29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAA  108 (200)
Q Consensus        29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d  108 (200)
                      ..+.-+||+++|..|+|||.|++++..+.|+|....+++.++..+++.+. +..+++++|||.|+++++.....|++.++
T Consensus         3 dykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~-gekiklqiwdtagqerfrsitqsyyrsah   81 (213)
T KOG0095|consen    3 DYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVN-GEKIKLQIWDTAGQERFRSITQSYYRSAH   81 (213)
T ss_pred             ccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEEC-CeEEEEEEeeccchHHHHHHHHHHhhhcc
Confidence            35677899999999999999999999999999999999999999999885 45599999999999999999999999999


Q ss_pred             EEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Q 028986          109 VAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF  188 (200)
Q Consensus       109 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~  188 (200)
                      ++|++||++...+|+-+..|+..+.+....++--|+|+||.|+.+.++++....++|.+.....++++||++..|++.+|
T Consensus        82 alilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf  161 (213)
T KOG0095|consen   82 ALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLF  161 (213)
T ss_pred             eEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHH
Confidence            99999999999999999999999999888888889999999999999999999999999989999999999999999999


Q ss_pred             HHHHHhhc
Q 028986          189 EVLITCTS  196 (200)
Q Consensus       189 ~~i~~~~~  196 (200)
                      ..+...+.
T Consensus       162 ~~~a~rli  169 (213)
T KOG0095|consen  162 LDLACRLI  169 (213)
T ss_pred             HHHHHHHH
Confidence            98876654

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=100.00  E-value=4.1e-32  Score=189.88  Aligned_cols=162  Identities=35%  Similarity=0.565  Sum_probs=138.0

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV  113 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v  113 (200)
                      +||+|+|++|||||||+++|.+..+...+.++....+ ...... ++..+.+.+||+||++++...+..+++.+|++++|
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v   78 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSY-RKQIEI-DGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLV   78 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhE-EEEEEE-CCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEE
Confidence            4899999999999999999999888776666665443 333333 44558999999999999999999999999999999


Q ss_pred             EeCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Q 028986          114 YDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI  192 (200)
Q Consensus       114 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~  192 (200)
                      ||++++++++.+..|+..+.+.. ..+.|+++|+||+|+...+....+++..+++..+++++++||+++.|++++|++|+
T Consensus        79 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  158 (164)
T smart00173       79 YSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLV  158 (164)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHH
Confidence            99999999999999988876543 45789999999999977666777788888888899999999999999999999999


Q ss_pred             Hhhcc
Q 028986          193 TCTSS  197 (200)
Q Consensus       193 ~~~~~  197 (200)
                      +.+.+
T Consensus       159 ~~~~~  163 (164)
T smart00173      159 REIRK  163 (164)
T ss_pred             HHHhh
Confidence            88764

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04132 Rho4_like Rho4-like subfamily

Probab=100.00  E-value=8.6e-32  Score=192.17  Aligned_cols=163  Identities=31%  Similarity=0.615  Sum_probs=138.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV  113 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v  113 (200)
                      +||+|+|++|+|||||+++|.++.+...+.++.+..+. ..+...++..+.+.+|||+|++++...+..+++.+|++++|
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   79 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYV-TNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC   79 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeE-EEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence            58999999999999999999999887777777766653 34555446668999999999999999999999999999999


Q ss_pred             EeCCCHHhHHHHH-HHHHHHHHcCCCCCeEEEEEeCCCCCCC----CcCCHHHHHHHHHHcCC-eEEEecCCCCCCHHHH
Q 028986          114 YDITSPDSFNKAQ-YWVKELQKHGSPDIVMALVGNKADLHEK----REVPAQDGIEYAEKNGM-FFIETSAKTADNINQL  187 (200)
Q Consensus       114 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~~----~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~i~~~  187 (200)
                      ||++++.+++.+. .|+..+... ..+.|+++|+||.|+...    +.+..+++.+++..+++ +++++||++|.|++++
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~  158 (187)
T cd04132          80 YAVDNPTSLDNVEDKWFPEVNHF-CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEV  158 (187)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHH
Confidence            9999999999885 588877655 457899999999998653    24567788889998888 8999999999999999


Q ss_pred             HHHHHHhhccc
Q 028986          188 FEVLITCTSSY  198 (200)
Q Consensus       188 ~~~i~~~~~~~  198 (200)
                      |..+++.+...
T Consensus       159 f~~l~~~~~~~  169 (187)
T cd04132         159 FDTAIEEALKK  169 (187)
T ss_pred             HHHHHHHHHhh
Confidence            99999887653

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04134 Rho3 Rho3 subfamily

Probab=100.00  E-value=9.9e-32  Score=192.07  Aligned_cols=160  Identities=31%  Similarity=0.595  Sum_probs=135.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEEE
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVY  114 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~  114 (200)
                      ||+|+|++|||||||+++|..+.+...+.++.+..+. ..+.. ++..+.+.+||++|++.+..++..+++.+|++++||
T Consensus         2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~-~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~   79 (189)
T cd04134           2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFV-DGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF   79 (189)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEE-CCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence            7999999999999999999999888777777766653 33444 455589999999999999999999999999999999


Q ss_pred             eCCCHHhHHHHH-HHHHHHHHcCCCCCeEEEEEeCCCCCCCC------------cCCHHHHHHHHHHcC-CeEEEecCCC
Q 028986          115 DITSPDSFNKAQ-YWVKELQKHGSPDIVMALVGNKADLHEKR------------EVPAQDGIEYAEKNG-MFFIETSAKT  180 (200)
Q Consensus       115 d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~~~------------~~~~~~~~~~~~~~~-~~~~~~S~~~  180 (200)
                      |++++.+++.+. .|+..+... ..+.|+++|+||+|+....            .+..++..+++...+ +++++|||++
T Consensus        80 dv~~~~sf~~~~~~~~~~i~~~-~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~  158 (189)
T cd04134          80 SVDSPDSLENVESKWLGEIREH-CPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKL  158 (189)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCc
Confidence            999999999885 688888765 4579999999999996543            345667777887776 6899999999


Q ss_pred             CCCHHHHHHHHHHhhcc
Q 028986          181 ADNINQLFEVLITCTSS  197 (200)
Q Consensus       181 ~~~i~~~~~~i~~~~~~  197 (200)
                      |.|++++|.+|++.+..
T Consensus       159 ~~~v~e~f~~l~~~~~~  175 (189)
T cd04134         159 NRGVNEAFTEAARVALN  175 (189)
T ss_pred             CCCHHHHHHHHHHHHhc
Confidence            99999999999988754

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=100.00  E-value=6.7e-32  Score=188.17  Aligned_cols=160  Identities=34%  Similarity=0.566  Sum_probs=135.8

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEE
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVV  112 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~  112 (200)
                      ++||+++|++|||||||+++|.++.+...+.++.+..+ ...+.+ ++..+.+.+||++|++++..++..+++.+|++++
T Consensus         1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~   78 (162)
T cd04138           1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVI-DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   78 (162)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEE-CCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEE
Confidence            36899999999999999999999888777777666544 333444 3445788999999999999999999999999999


Q ss_pred             EEeCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Q 028986          113 VYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVL  191 (200)
Q Consensus       113 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i  191 (200)
                      |||++++.+++.+..|+..+.+.. ..+.|+++|+||+|+.. +.....++..+++..+++++++|+++|.|++++|++|
T Consensus        79 v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  157 (162)
T cd04138          79 VFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTL  157 (162)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHH
Confidence            999999999999998988887654 45789999999999865 3455677788888889999999999999999999999


Q ss_pred             HHhh
Q 028986          192 ITCT  195 (200)
Q Consensus       192 ~~~~  195 (200)
                      ++.+
T Consensus       158 ~~~~  161 (162)
T cd04138         158 VREI  161 (162)
T ss_pred             HHHh
Confidence            8765

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=100.00  E-value=8.9e-32  Score=188.09  Aligned_cols=161  Identities=32%  Similarity=0.531  Sum_probs=137.6

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEE
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVV  112 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~  112 (200)
                      .+||+++|++|+|||||++++.+..+...+.++.+..+ .....+ ++..+.+.+||+||++++...+..+++.+|++++
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~il   79 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEI-DGQWAILDILDTAGQEEFSAMREQYMRTGEGFLL   79 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEE-CCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEE
Confidence            47999999999999999999999877666666665444 333334 4555789999999999999999999999999999


Q ss_pred             EEeCCCHHhHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Q 028986          113 VYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVL  191 (200)
Q Consensus       113 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i  191 (200)
                      |||++++.+++.+..|+..+.+. ...+.|+++|+||+|+...+.+..++..++++..+++++++||++|.|++++|++|
T Consensus        80 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  159 (164)
T cd04145          80 VFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDL  159 (164)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHH
Confidence            99999999999999999888764 34578999999999997776677778888888888999999999999999999999


Q ss_pred             HHhh
Q 028986          192 ITCT  195 (200)
Q Consensus       192 ~~~~  195 (200)
                      ++.+
T Consensus       160 ~~~~  163 (164)
T cd04145         160 VRVI  163 (164)
T ss_pred             HHhh
Confidence            8765

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=3.8e-33  Score=184.45  Aligned_cols=171  Identities=44%  Similarity=0.732  Sum_probs=158.3

Q ss_pred             CCCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCc
Q 028986           28 DAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGA  107 (200)
Q Consensus        28 ~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~  107 (200)
                      ..+...|||+++|..-+|||||+-+++.++|......+....+..+.+.+.+.. ..+.||||.|+++|..+-+-|++.+
T Consensus         8 ~g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~r-a~L~IWDTAGQErfHALGPIYYRgS   86 (218)
T KOG0088|consen    8 DGKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCR-ADLHIWDTAGQERFHALGPIYYRGS   86 (218)
T ss_pred             cCCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccce-eeeeeeeccchHhhhccCceEEeCC
Confidence            345678999999999999999999999999988888888888888888887644 8999999999999999999999999


Q ss_pred             cEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHH
Q 028986          108 AVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQL  187 (200)
Q Consensus       108 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~  187 (200)
                      +++++|||+++++||+.++.|...++.-....+.++||+||+|+.+.+.++.+++..+++.-++.|+++||+++.||.++
T Consensus        87 nGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~el  166 (218)
T KOG0088|consen   87 NGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGISEL  166 (218)
T ss_pred             CceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccCHHHH
Confidence            99999999999999999999999999877888999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcccC
Q 028986          188 FEVLITCTSSYC  199 (200)
Q Consensus       188 ~~~i~~~~~~~~  199 (200)
                      |+.|...+.+..
T Consensus       167 Fe~Lt~~MiE~~  178 (218)
T KOG0088|consen  167 FESLTAKMIEHS  178 (218)
T ss_pred             HHHHHHHHHHHh
Confidence            999988876643

>PLN03118 Rab family protein; Provisional

Probab=100.00  E-value=2.3e-31  Score=193.33  Aligned_cols=167  Identities=37%  Similarity=0.662  Sum_probs=139.7

Q ss_pred             CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCcc
Q 028986           29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAA  108 (200)
Q Consensus        29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d  108 (200)
                      .....+||+|+|++|||||||+++|.+..+. .+.++.+.++....+.+. +..+.+.+||+||++.+...+..+++.+|
T Consensus        10 ~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~-~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d   87 (211)
T PLN03118         10 GYDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVG-GKRLKLTIWDTAGQERFRTLTSSYYRNAQ   87 (211)
T ss_pred             ccCcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEEC-CEEEEEEEEECCCchhhHHHHHHHHhcCC
Confidence            3456789999999999999999999998764 455666666655555553 44488999999999999999999999999


Q ss_pred             EEEEEEeCCCHHhHHHHHH-HHHHHHHcC-CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHH
Q 028986          109 VAVVVYDITSPDSFNKAQY-WVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQ  186 (200)
Q Consensus       109 ~~i~v~d~~~~~s~~~~~~-~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~  186 (200)
                      ++++|||++++++++.+.. |...+.... ..+.|+++|+||.|+.....+..++...++..+++.++++|++++.|+++
T Consensus        88 ~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~  167 (211)
T PLN03118         88 GIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQ  167 (211)
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence            9999999999999999865 656555432 35688999999999977777777888888888899999999999999999


Q ss_pred             HHHHHHHhhcc
Q 028986          187 LFEVLITCTSS  197 (200)
Q Consensus       187 ~~~~i~~~~~~  197 (200)
                      +|++|.+.+.+
T Consensus       168 l~~~l~~~~~~  178 (211)
T PLN03118        168 CFEELALKIME  178 (211)
T ss_pred             HHHHHHHHHHh
Confidence            99999988754

>cd04123 Rab21 Rab21 subfamily

Probab=100.00  E-value=3e-31  Score=184.85  Aligned_cols=161  Identities=45%  Similarity=0.751  Sum_probs=140.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV  113 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v  113 (200)
                      +||+|+|++|+|||||+++|++..+.+...++.........+... +..+.+.+||++|++.+...+..+++++|++++|
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   79 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIG-GKRIDLAIWDTAGQERYHALGPIYYRDADGAILV   79 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEEC-CEEEEEEEEECCchHHHHHhhHHHhccCCEEEEE
Confidence            589999999999999999999988876666666666655555553 4557899999999999999999999999999999


Q ss_pred             EeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Q 028986          114 YDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT  193 (200)
Q Consensus       114 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~  193 (200)
                      +|++++++++.+..|+..+......++|+++|+||+|+........++..+++...+++++++|++++.|+++++++|.+
T Consensus        80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~  159 (162)
T cd04123          80 YDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAK  159 (162)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            99999999999999999988776668999999999999877677778888888888999999999999999999999988


Q ss_pred             hh
Q 028986          194 CT  195 (200)
Q Consensus       194 ~~  195 (200)
                      .+
T Consensus       160 ~~  161 (162)
T cd04123         160 RM  161 (162)
T ss_pred             Hh
Confidence            65

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd01862 Rab7 Rab7 subfamily

Probab=100.00  E-value=3.7e-31  Score=186.31  Aligned_cols=164  Identities=39%  Similarity=0.723  Sum_probs=140.6

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV  113 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v  113 (200)
                      +||+++|++|||||||+++|.+..+...+.++.+.++....+...+ ..+.+.+||+||++.+...+..+++.+|++|++
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v   79 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDD-KLVTLQIWDTAGQERFQSLGVAFYRGADCCVLV   79 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECC-EEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEE
Confidence            5899999999999999999999988777777777777666666644 458899999999999999999999999999999


Q ss_pred             EeCCCHHhHHHHHHHHHHHHHcC----CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcC-CeEEEecCCCCCCHHHHH
Q 028986          114 YDITSPDSFNKAQYWVKELQKHG----SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNG-MFFIETSAKTADNINQLF  188 (200)
Q Consensus       114 ~d~~~~~s~~~~~~~~~~i~~~~----~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~S~~~~~~i~~~~  188 (200)
                      ||++++.+++.+..|+..+....    ..++|+++|+||+|+........++...++...+ ++++++|+++|.|++++|
T Consensus        80 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~  159 (172)
T cd01862          80 YDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAF  159 (172)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHH
Confidence            99999999998888888765543    2379999999999997666666777788888876 789999999999999999


Q ss_pred             HHHHHhhccc
Q 028986          189 EVLITCTSSY  198 (200)
Q Consensus       189 ~~i~~~~~~~  198 (200)
                      ++|.+.+.+.
T Consensus       160 ~~i~~~~~~~  169 (172)
T cd01862         160 ETIARKALEQ  169 (172)
T ss_pred             HHHHHHHHhc
Confidence            9999887654

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd04118 Rab24 Rab24 subfamily

Probab=100.00  E-value=4.4e-31  Score=189.42  Aligned_cols=163  Identities=40%  Similarity=0.681  Sum_probs=138.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcCCCCC-CCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEE
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRGQFDP-TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVV  112 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~  112 (200)
                      +||+|+|++|+|||||+++|.++.+.. .+.++.+..+....+... +..+.+.+||++|++++...+..+++.+|++++
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iil   79 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVG-ERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIV   79 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEEC-CEEEEEEEEECCCchhhhhhhHhhcCCCCEEEE
Confidence            489999999999999999999988764 466677776666666664 555889999999999998888889999999999


Q ss_pred             EEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCC----CcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Q 028986          113 VYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK----REVPAQDGIEYAEKNGMFFIETSAKTADNINQLF  188 (200)
Q Consensus       113 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~  188 (200)
                      |||++++.+++.+..|+..+... ..+.|+++|+||+|+...    ..+..+++.+++...+++++++|++++.|++++|
T Consensus        80 v~d~~~~~s~~~~~~~~~~i~~~-~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~  158 (193)
T cd04118          80 CYDLTDSSSFERAKFWVKELQNL-EEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELF  158 (193)
T ss_pred             EEECCCHHHHHHHHHHHHHHHhc-CCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence            99999999999999999988775 457899999999998532    3445567778888888999999999999999999


Q ss_pred             HHHHHhhccc
Q 028986          189 EVLITCTSSY  198 (200)
Q Consensus       189 ~~i~~~~~~~  198 (200)
                      ++|.+.+.++
T Consensus       159 ~~i~~~~~~~  168 (193)
T cd04118         159 QKVAEDFVSR  168 (193)
T ss_pred             HHHHHHHHHh
Confidence            9999887553

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd04142 RRP22 RRP22 subfamily

Probab=100.00  E-value=3.4e-31  Score=190.18  Aligned_cols=163  Identities=26%  Similarity=0.360  Sum_probs=131.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhh--------hccccccc
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYA--------ALAPLYYR  105 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~--------~~~~~~~~  105 (200)
                      +||+|+|.+|||||||+++|.++.+...+.++.+.......+.+ ++..+.+.+|||||...+.        ......++
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~-~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~   79 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVL-SGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLR   79 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEE-CCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhc
Confidence            58999999999999999999999887777777765554444444 4556889999999964322        12334578


Q ss_pred             CccEEEEEEeCCCHHhHHHHHHHHHHHHHcC---CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHH-HcCCeEEEecCCCC
Q 028986          106 GAAVAVVVYDITSPDSFNKAQYWVKELQKHG---SPDIVMALVGNKADLHEKREVPAQDGIEYAE-KNGMFFIETSAKTA  181 (200)
Q Consensus       106 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~S~~~~  181 (200)
                      .+|++|+|||++++++++.+..|+..+....   ..++|+++|+||+|+...+....++...++. .++++++++||++|
T Consensus        80 ~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g  159 (198)
T cd04142          80 NSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYN  159 (198)
T ss_pred             cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCC
Confidence            8999999999999999999999998887653   4679999999999997666666666666654 56899999999999


Q ss_pred             CCHHHHHHHHHHhhcc
Q 028986          182 DNINQLFEVLITCTSS  197 (200)
Q Consensus       182 ~~i~~~~~~i~~~~~~  197 (200)
                      .|++++|+.+++.+..
T Consensus       160 ~~v~~lf~~i~~~~~~  175 (198)
T cd04142         160 WHILLLFKELLISATT  175 (198)
T ss_pred             CCHHHHHHHHHHHhhc
Confidence            9999999999987654

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=2.2e-31  Score=190.91  Aligned_cols=156  Identities=28%  Similarity=0.547  Sum_probs=135.5

Q ss_pred             EcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCC
Q 028986           39 LGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITS  118 (200)
Q Consensus        39 ~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~  118 (200)
                      +|.+|||||||+++|+.+.+...+.++.+.++....+.+. +..+.+.+||++|++++..++..+++++|++|+|||+++
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~-~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~   79 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTN-RGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTA   79 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEEC-CEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCC
Confidence            6999999999999999988877788888888777766654 455899999999999999999999999999999999999


Q ss_pred             HHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHhhccc
Q 028986          119 PDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLITCTSSY  198 (200)
Q Consensus       119 ~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~~~~~  198 (200)
                      +.+++.+..|+..+.+.. .++|+++|+||+|+.. +.+..+. ..++...++.+++|||++|.|+.++|++|++.+.+.
T Consensus        80 ~~S~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~-~~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~  156 (200)
T smart00176       80 RVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDVKD-RKVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD  156 (200)
T ss_pred             hHHHHHHHHHHHHHHHhC-CCCCEEEEEECccccc-ccCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence            999999999999998764 5899999999999854 3344444 467788899999999999999999999999887553

Ran is involved in the active transport of proteins through nuclear pores.

>cd01873 RhoBTB RhoBTB subfamily

Probab=100.00  E-value=3.6e-31  Score=189.43  Aligned_cols=159  Identities=27%  Similarity=0.441  Sum_probs=127.3

Q ss_pred             eeeEEEEcCCCCcHHHHHH-HHHcCC-----CCCCCccccce-eEEEEE-------EEecCCcEEEEEEEeCCChhhhhh
Q 028986           33 RVKLVLLGDSGVGKSCIVL-RFVRGQ-----FDPTSKVTVGA-SFLSQT-------IALQDSTTVKFEIWDTAGQERYAA   98 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~-~l~~~~-----~~~~~~~~~~~-~~~~~~-------~~~~~~~~~~~~l~D~~g~~~~~~   98 (200)
                      .+||+++|+.|||||||+. ++.+..     +...+.++.+. +.....       ....++..+.+.+|||+|++.  .
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~   79 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K   79 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence            4799999999999999995 665543     34455666642 221111       112356679999999999875  2


Q ss_pred             cccccccCccEEEEEEeCCCHHhHHHHH-HHHHHHHHcCCCCCeEEEEEeCCCCCC-------------------CCcCC
Q 028986           99 LAPLYYRGAAVAVVVYDITSPDSFNKAQ-YWVKELQKHGSPDIVMALVGNKADLHE-------------------KREVP  158 (200)
Q Consensus        99 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~-------------------~~~~~  158 (200)
                      ....+++++|++|+|||++++.|++.+. .|+..+.... .+.|+++|+||+|+..                   .+.+.
T Consensus        80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~  158 (195)
T cd01873          80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC-PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILP  158 (195)
T ss_pred             hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhccccccchhhhcccccccccccCCccC
Confidence            4556889999999999999999999996 6999887764 5789999999999864                   36778


Q ss_pred             HHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHh
Q 028986          159 AQDGIEYAEKNGMFFIETSAKTADNINQLFEVLITC  194 (200)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~  194 (200)
                      .+++++++++++++|++|||++|.||+++|+.++++
T Consensus       159 ~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         159 PETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             HHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence            899999999999999999999999999999999875

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd01863 Rab18 Rab18 subfamily

Probab=100.00  E-value=7.8e-31  Score=182.84  Aligned_cols=160  Identities=48%  Similarity=0.832  Sum_probs=138.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV  113 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v  113 (200)
                      +||+|+|++|||||||+++|.+..+.....++.+.++....+.+ ++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   79 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTV-DGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILV   79 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEE-CCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEE
Confidence            58999999999999999999998887767777777776665555 34458899999999999988889999999999999


Q ss_pred             EeCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Q 028986          114 YDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI  192 (200)
Q Consensus       114 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~  192 (200)
                      +|++++.+++.+..|+..+.... ..+.|+++|+||+|+.. .....++..+++...+++++++|+++|.|+++++++++
T Consensus        80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~  158 (161)
T cd01863          80 YDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKEN-REVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELV  158 (161)
T ss_pred             EECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccc-cccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHH
Confidence            99999999999999999887764 56799999999999973 34566788888988999999999999999999999998


Q ss_pred             Hhh
Q 028986          193 TCT  195 (200)
Q Consensus       193 ~~~  195 (200)
                      +.+
T Consensus       159 ~~~  161 (161)
T cd01863         159 EKI  161 (161)
T ss_pred             HhC
Confidence            753

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=100.00  E-value=3.7e-31  Score=186.78  Aligned_cols=159  Identities=32%  Similarity=0.616  Sum_probs=134.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEEEe
Q 028986           36 LVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYD  115 (200)
Q Consensus        36 i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d  115 (200)
                      |+|+|++|||||||+++|.++.+...+.++....+. ..+.. ++..+.+.+|||+|++.+...+..+++.+|++|+|||
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d   78 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYS-ADVEV-DGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFS   78 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeee-EEEEE-CCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEE
Confidence            589999999999999999999887777666655543 34444 4555889999999999999999999999999999999


Q ss_pred             CCCHHhHHHHH-HHHHHHHHcCCCCCeEEEEEeCCCCCCC------------CcCCHHHHHHHHHHcCC-eEEEecCCCC
Q 028986          116 ITSPDSFNKAQ-YWVKELQKHGSPDIVMALVGNKADLHEK------------REVPAQDGIEYAEKNGM-FFIETSAKTA  181 (200)
Q Consensus       116 ~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~S~~~~  181 (200)
                      ++++++++.+. .|+..+... .+++|+++|+||+|+...            ..+..+++.++++..+. .+++||++++
T Consensus        79 ~~~~~s~~~~~~~~~~~i~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~  157 (174)
T smart00174       79 VDSPASFENVKEKWYPEVKHF-CPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQ  157 (174)
T ss_pred             CCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCC
Confidence            99999999885 699888776 458999999999998653            23667788889999886 8999999999


Q ss_pred             CCHHHHHHHHHHhhcc
Q 028986          182 DNINQLFEVLITCTSS  197 (200)
Q Consensus       182 ~~i~~~~~~i~~~~~~  197 (200)
                      .|++++|+.|++.+..
T Consensus       158 ~~v~~lf~~l~~~~~~  173 (174)
T smart00174      158 EGVREVFEEAIRAALN  173 (174)
T ss_pred             CCHHHHHHHHHHHhcC
Confidence            9999999999987643

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04177 RSR1 RSR1 subgroup

Probab=100.00  E-value=1e-30  Score=183.61  Aligned_cols=161  Identities=34%  Similarity=0.568  Sum_probs=138.2

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEE
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVV  112 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~  112 (200)
                      .+||+++|++|||||||+++|.++.+...+.++.+..+ ...+.. ++..+.+.+||+||++++..++..+++.++++++
T Consensus         1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vl   78 (168)
T cd04177           1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSY-RKQVEI-DGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLL   78 (168)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEE-CCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEE
Confidence            36899999999999999999999888776666666444 344444 3455889999999999999999999999999999


Q ss_pred             EEeCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcC-CeEEEecCCCCCCHHHHHHH
Q 028986          113 VYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNG-MFFIETSAKTADNINQLFEV  190 (200)
Q Consensus       113 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~S~~~~~~i~~~~~~  190 (200)
                      |||++++++++.+..|...+.+.. ..+.|+++++||.|+...+....++...+++.++ ++++++||+.+.|++++|++
T Consensus        79 v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~  158 (168)
T cd04177          79 VYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFID  158 (168)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHH
Confidence            999999999999999998887643 4579999999999998777777778788888887 78999999999999999999


Q ss_pred             HHHhh
Q 028986          191 LITCT  195 (200)
Q Consensus       191 i~~~~  195 (200)
                      ++.++
T Consensus       159 i~~~~  163 (168)
T cd04177         159 LVRQI  163 (168)
T ss_pred             HHHHH
Confidence            99765

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd04103 Centaurin_gamma Centaurin gamma

Probab=100.00  E-value=7.8e-31  Score=182.10  Aligned_cols=154  Identities=19%  Similarity=0.318  Sum_probs=126.9

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV  113 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v  113 (200)
                      +||+++|+.|||||||++++..+.+.+.+.++ ...+ ...+.+ ++..+.+.+||++|++.     ..+++.+|++++|
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~-~~~i~~-~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv   72 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRF-KKEVLV-DGQSHLLLIRDEGGAPD-----AQFASWVDAVIFV   72 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccce-EEEEEE-CCEEEEEEEEECCCCCc-----hhHHhcCCEEEEE
Confidence            48999999999999999999988876655443 3333 345555 45568899999999964     3456789999999


Q ss_pred             EeCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCC--CCCcCCHHHHHHHHHHc-CCeEEEecCCCCCCHHHHHH
Q 028986          114 YDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLH--EKREVPAQDGIEYAEKN-GMFFIETSAKTADNINQLFE  189 (200)
Q Consensus       114 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~--~~~~~~~~~~~~~~~~~-~~~~~~~S~~~~~~i~~~~~  189 (200)
                      ||++++.+|+.+..|+..+.... ..++|+++|+||.|+.  ..+++..+++.++++.. ++.|++|||+++.||+++|.
T Consensus        73 ~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~  152 (158)
T cd04103          73 FSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQ  152 (158)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHH
Confidence            99999999999999999988764 3678999999999985  35677888888888776 58999999999999999999


Q ss_pred             HHHHhh
Q 028986          190 VLITCT  195 (200)
Q Consensus       190 ~i~~~~  195 (200)
                      .+.+.+
T Consensus       153 ~~~~~~  158 (158)
T cd04103         153 EAAQKI  158 (158)
T ss_pred             HHHhhC
Confidence            998653

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.98  E-value=9.5e-31  Score=193.33  Aligned_cols=160  Identities=26%  Similarity=0.450  Sum_probs=134.9

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV  113 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v  113 (200)
                      +||+|+|++|||||||+++|+++.+...+.++.+ ++....+.+ ++..+.+.+|||+|++.+...+..++..+|++|+|
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i-~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlV   78 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSI-RGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILV   78 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEE-CCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEE
Confidence            4899999999999999999999988777777665 333444455 45558999999999998888888888999999999


Q ss_pred             EeCCCHHhHHHHHHHHHHHHHc---------CCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHH-cCCeEEEecCCCCCC
Q 028986          114 YDITSPDSFNKAQYWVKELQKH---------GSPDIVMALVGNKADLHEKREVPAQDGIEYAEK-NGMFFIETSAKTADN  183 (200)
Q Consensus       114 ~d~~~~~s~~~~~~~~~~i~~~---------~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~S~~~~~~  183 (200)
                      ||++++++|+.+..|+..+...         ...++|+++|+||+|+...+++..+++.+++.. .++.++++||+++.|
T Consensus        79 fdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~g  158 (247)
T cd04143          79 FSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSN  158 (247)
T ss_pred             EeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCC
Confidence            9999999999999999888653         235789999999999977667777887777754 467899999999999


Q ss_pred             HHHHHHHHHHhh
Q 028986          184 INQLFEVLITCT  195 (200)
Q Consensus       184 i~~~~~~i~~~~  195 (200)
                      ++++|++|.+.+
T Consensus       159 I~elf~~L~~~~  170 (247)
T cd04143         159 LDEMFRALFSLA  170 (247)
T ss_pred             HHHHHHHHHHHh
Confidence            999999999865

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd00154 Rab Rab family

Probab=99.98  E-value=1.3e-30  Score=180.74  Aligned_cols=159  Identities=49%  Similarity=0.891  Sum_probs=141.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV  113 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v  113 (200)
                      +||+++|+++||||||+++|.+..+...+.++.+.++....+... +..+.+.+||+||++.+...+..+++++|++++|
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v   79 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEID-GKTVKLQIWDTAGQERFRSITPSYYRGAHGAILV   79 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEEC-CEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEE
Confidence            589999999999999999999998888777777877777766664 4448899999999999999999999999999999


Q ss_pred             EeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Q 028986          114 YDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT  193 (200)
Q Consensus       114 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~  193 (200)
                      +|++++++++.+..|+..+........|+++++||+|+........++..+++...+++++++|++++.|+++++++|.+
T Consensus        80 ~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~  159 (159)
T cd00154          80 YDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLAE  159 (159)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHhC
Confidence            99999999999999999998876678999999999999756667788888999888999999999999999999999863

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.98  E-value=4.1e-33  Score=184.41  Aligned_cols=171  Identities=32%  Similarity=0.600  Sum_probs=155.5

Q ss_pred             CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEec--------CCcEEEEEEEeCCChhhhhhcc
Q 028986           29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQ--------DSTTVKFEIWDTAGQERYAALA  100 (200)
Q Consensus        29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~D~~g~~~~~~~~  100 (200)
                      ..++-+|.+.+|++|+|||||+.++..+.|......+.++++..+.+.+.        .+..+.+++|||+|+++++.+.
T Consensus         5 dydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLT   84 (219)
T KOG0081|consen    5 DYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLT   84 (219)
T ss_pred             cHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHH
Confidence            34677899999999999999999999999999999999999998888764        2234789999999999999999


Q ss_pred             cccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCC
Q 028986          101 PLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAK  179 (200)
Q Consensus       101 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~  179 (200)
                      ..+++.+=+++++||+++..||-++..|+..++.+. ..+.-+++++||+|+.+.+.++.+++.+++.++++|||++||-
T Consensus        85 TAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~  164 (219)
T KOG0081|consen   85 TAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSAC  164 (219)
T ss_pred             HHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccc
Confidence            999999999999999999999999999999998875 4456699999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHhhcccC
Q 028986          180 TADNINQLFEVLITCTSSYC  199 (200)
Q Consensus       180 ~~~~i~~~~~~i~~~~~~~~  199 (200)
                      +|.|+++..+.|+..+.+++
T Consensus       165 tg~Nv~kave~LldlvM~Ri  184 (219)
T KOG0081|consen  165 TGTNVEKAVELLLDLVMKRI  184 (219)
T ss_pred             cCcCHHHHHHHHHHHHHHHH
Confidence            99999999999998887753

>cd04114 Rab30 Rab30 subfamily

Probab=99.98  E-value=2.8e-30  Score=181.39  Aligned_cols=164  Identities=40%  Similarity=0.777  Sum_probs=141.3

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA  110 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  110 (200)
                      ...++|+++|++|+|||||+++|....+.+...++.+.++....+.+. +..+.+.+||++|++.+...+..++..+|++
T Consensus         5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~   83 (169)
T cd04114           5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIK-GEKIKLQIWDTAGQERFRSITQSYYRSANAL   83 (169)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEEC-CEEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence            456899999999999999999999888777666777666666666653 4447899999999999988888999999999


Q ss_pred             EEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Q 028986          111 VVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEV  190 (200)
Q Consensus       111 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~  190 (200)
                      ++|||++++.+++.+..|+..+......++|+++|+||+|+...+++..+....+.+....+++++|+++|.|++++|++
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~  163 (169)
T cd04114          84 ILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLD  163 (169)
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHH
Confidence            99999999999999999999888776668999999999999777777777777777777889999999999999999999


Q ss_pred             HHHhh
Q 028986          191 LITCT  195 (200)
Q Consensus       191 i~~~~  195 (200)
                      |.+.+
T Consensus       164 i~~~~  168 (169)
T cd04114         164 LACRL  168 (169)
T ss_pred             HHHHh
Confidence            98764

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.98  E-value=4.9e-31  Score=184.64  Aligned_cols=160  Identities=33%  Similarity=0.468  Sum_probs=132.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhh-hhhcccccccCccEEEEE
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQER-YAALAPLYYRGAAVAVVV  113 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-~~~~~~~~~~~~d~~i~v  113 (200)
                      ||+|+|++|+|||||+++++...+...+.++....+ ...+.+ ++..+.+.+||+||++. ....+..+++.+|++++|
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v   78 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTI-DGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLV   78 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEE-CCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEE
Confidence            589999999999999999998877666666554444 333444 45558899999999874 234556778899999999


Q ss_pred             EeCCCHHhHHHHHHHHHHHHHcC--CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCC-CHHHHHHH
Q 028986          114 YDITSPDSFNKAQYWVKELQKHG--SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTAD-NINQLFEV  190 (200)
Q Consensus       114 ~d~~~~~s~~~~~~~~~~i~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~-~i~~~~~~  190 (200)
                      ||++++.+++.+..|+..+....  ..+.|+++|+||+|+...+.+..+++.++++..+++++++|++++. |++++|+.
T Consensus        79 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~  158 (165)
T cd04146          79 YSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHE  158 (165)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHH
Confidence            99999999999999998887754  4579999999999997777777888889999899999999999994 99999999


Q ss_pred             HHHhhc
Q 028986          191 LITCTS  196 (200)
Q Consensus       191 i~~~~~  196 (200)
                      |++.+.
T Consensus       159 l~~~~~  164 (165)
T cd04146         159 LCREVR  164 (165)
T ss_pred             HHHHHh
Confidence            998765

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.98  E-value=2.6e-30  Score=182.34  Aligned_cols=157  Identities=32%  Similarity=0.594  Sum_probs=132.6

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV  113 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v  113 (200)
                      +||+++|++|+|||||++++.++.+...+.++....+ ...+.+ ++..+++.+||+||++++...+..+++++|++++|
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v   78 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNF-SVVVLV-DGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLC   78 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEE-CCEEEEEEEEECCCChhhccccccccCCCcEEEEE
Confidence            5899999999999999999999888777776653333 344555 34568999999999999999999999999999999


Q ss_pred             EeCCCHHhHHHH-HHHHHHHHHcCCCCCeEEEEEeCCCCCC------------CCcCCHHHHHHHHHHcCC-eEEEecCC
Q 028986          114 YDITSPDSFNKA-QYWVKELQKHGSPDIVMALVGNKADLHE------------KREVPAQDGIEYAEKNGM-FFIETSAK  179 (200)
Q Consensus       114 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~S~~  179 (200)
                      ||++++++++.+ ..|+..+... ..+.|+++|+||.|+..            .+.+..+++..+++..+. .++++||+
T Consensus        79 ~d~~~~~sf~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~  157 (173)
T cd04130          79 FSVVNPSSFQNISEKWIPEIRKH-NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSAL  157 (173)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCC
Confidence            999999999988 4688888754 45789999999999853            345677888899998887 89999999


Q ss_pred             CCCCHHHHHHHHHH
Q 028986          180 TADNINQLFEVLIT  193 (200)
Q Consensus       180 ~~~~i~~~~~~i~~  193 (200)
                      ++.|++++|+.++-
T Consensus       158 ~~~~v~~lf~~~~~  171 (173)
T cd04130         158 TQKNLKEVFDTAIL  171 (173)
T ss_pred             CCCCHHHHHHHHHh
Confidence            99999999998864

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd01892 Miro2 Miro2 subfamily

Probab=99.98  E-value=1.1e-30  Score=183.50  Aligned_cols=163  Identities=24%  Similarity=0.285  Sum_probs=136.6

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCC-CCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccE
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFD-PTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAV  109 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~  109 (200)
                      .+.+||+++|.+|||||||+++|+++.+. ..+.++.+..+....+.+ ++..+.+.+||++|++.+...+..+++.+|+
T Consensus         2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~-~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~   80 (169)
T cd01892           2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEV-YGQEKYLILREVGEDEVAILLNDAELAACDV   80 (169)
T ss_pred             CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEE-CCeEEEEEEEecCCcccccccchhhhhcCCE
Confidence            45789999999999999999999999887 777888877776666655 3555789999999999888888999999999


Q ss_pred             EEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCC-eEEEecCCCCCCHHHHH
Q 028986          110 AVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGM-FFIETSAKTADNINQLF  188 (200)
Q Consensus       110 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~i~~~~  188 (200)
                      +++|+|++++.+++.+..|+..+..  ..++|+++|+||+|+.+.......+..++++.+++ .++++||+++.|++++|
T Consensus        81 ~llv~d~~~~~s~~~~~~~~~~~~~--~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf  158 (169)
T cd01892          81 ACLVYDSSDPKSFSYCAEVYKKYFM--LGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELF  158 (169)
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHhcc--CCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHH
Confidence            9999999999999998888876643  23789999999999965544444455677777777 47999999999999999


Q ss_pred             HHHHHhhc
Q 028986          189 EVLITCTS  196 (200)
Q Consensus       189 ~~i~~~~~  196 (200)
                      +.|.+.+.
T Consensus       159 ~~l~~~~~  166 (169)
T cd01892         159 TKLATAAQ  166 (169)
T ss_pred             HHHHHHhh
Confidence            99998765

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04135 Tc10 TC10 subfamily

Probab=99.97  E-value=4e-30  Score=181.50  Aligned_cols=159  Identities=29%  Similarity=0.575  Sum_probs=133.6

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV  113 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v  113 (200)
                      +||+++|++|+|||||+++|..+.+...+.++....+ ...+.+ ++..+.+.+||++|++.+...+..+++.+|++++|
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   78 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTV-GGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLIC   78 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-EEEEEE-CCEEEEEEEEeCCCcccccccccccCCCCCEEEEE
Confidence            5899999999999999999999988776666655443 334444 34457899999999999999999999999999999


Q ss_pred             EeCCCHHhHHHHH-HHHHHHHHcCCCCCeEEEEEeCCCCCCC------------CcCCHHHHHHHHHHcCC-eEEEecCC
Q 028986          114 YDITSPDSFNKAQ-YWVKELQKHGSPDIVMALVGNKADLHEK------------REVPAQDGIEYAEKNGM-FFIETSAK  179 (200)
Q Consensus       114 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~S~~  179 (200)
                      ||++++.+++.+. .|+..+... ..+.|+++|+||+|+...            ..+..+++..+++..++ ++++|||+
T Consensus        79 ~~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~  157 (174)
T cd04135          79 FSVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSAL  157 (174)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCC
Confidence            9999999998884 688888765 678999999999998543            25667788888888886 79999999


Q ss_pred             CCCCHHHHHHHHHHhh
Q 028986          180 TADNINQLFEVLITCT  195 (200)
Q Consensus       180 ~~~~i~~~~~~i~~~~  195 (200)
                      ++.|++++|+.+++.+
T Consensus       158 ~~~gi~~~f~~~~~~~  173 (174)
T cd04135         158 TQKGLKTVFDEAILAI  173 (174)
T ss_pred             cCCCHHHHHHHHHHHh
Confidence            9999999999998865

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd04148 RGK RGK subfamily

Probab=99.97  E-value=2.7e-30  Score=188.61  Aligned_cols=160  Identities=29%  Similarity=0.425  Sum_probs=132.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcCCCC-CCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhccccccc-CccEEE
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRGQFD-PTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYR-GAAVAV  111 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~-~~d~~i  111 (200)
                      +||+++|++|+|||||+++|..+.+. ..+.++.+.++....+.+. +....+.+||++|++.+  ....++. .+|+++
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~-~~~~~l~i~Dt~G~~~~--~~~~~~~~~ad~ii   77 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVD-GEESTLVVIDHWEQEMW--TEDSCMQYQGDAFV   77 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEEC-CEEEEEEEEeCCCcchH--HHhHHhhcCCCEEE
Confidence            58999999999999999999887775 5555555545555556553 45588999999999732  2334555 899999


Q ss_pred             EEEeCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Q 028986          112 VVYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEV  190 (200)
Q Consensus       112 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~  190 (200)
                      +|||++++.+++.+..|+..+.... ..++|+++|+||+|+...+.+..++..+++...+++++++||+++.|++++|++
T Consensus        78 lV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~  157 (221)
T cd04148          78 VVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEG  157 (221)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Confidence            9999999999999999999887653 357999999999999877777788888888888999999999999999999999


Q ss_pred             HHHhhc
Q 028986          191 LITCTS  196 (200)
Q Consensus       191 i~~~~~  196 (200)
                      |++.+.
T Consensus       158 l~~~~~  163 (221)
T cd04148         158 IVRQIR  163 (221)
T ss_pred             HHHHHH
Confidence            998885

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.97  E-value=1.4e-29  Score=176.91  Aligned_cols=162  Identities=33%  Similarity=0.541  Sum_probs=137.2

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV  113 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v  113 (200)
                      +||+++|++|||||||+++|+...+...+.++....+ ...... ++..+.+.+||+||++++...+..+++.+|+++++
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   78 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVL-DGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLV   78 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhE-EEEEEE-CCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEE
Confidence            5899999999999999999999887766666555443 233333 55558899999999999999999999999999999


Q ss_pred             EeCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Q 028986          114 YDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI  192 (200)
Q Consensus       114 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~  192 (200)
                      +|++++.+++.+..|+..+.... ..++|+++|+||+|+.........+...++..++++++++|++++.|++++|++|.
T Consensus        79 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  158 (164)
T cd04139          79 FSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLV  158 (164)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHH
Confidence            99999999999988888877653 45799999999999976555667777888888899999999999999999999999


Q ss_pred             Hhhcc
Q 028986          193 TCTSS  197 (200)
Q Consensus       193 ~~~~~  197 (200)
                      +.+.+
T Consensus       159 ~~~~~  163 (164)
T cd04139         159 REIRQ  163 (164)
T ss_pred             HHHHh
Confidence            88754

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd00876 Ras Ras family

Probab=99.97  E-value=1.4e-29  Score=176.06  Aligned_cols=159  Identities=38%  Similarity=0.612  Sum_probs=135.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEEE
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVY  114 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~  114 (200)
                      ||+|+|++|||||||+++|++..+.....++.. +........ ++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   78 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVV-DGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVY   78 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEE-CCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEE
Confidence            689999999999999999998877666666555 333344444 344588999999999998888899999999999999


Q ss_pred             eCCCHHhHHHHHHHHHHHHHcCC-CCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Q 028986          115 DITSPDSFNKAQYWVKELQKHGS-PDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT  193 (200)
Q Consensus       115 d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~  193 (200)
                      |++++++++.+..|+..+..... ...|+++|+||+|+...+....+++..++..++++++++|++++.|++++|++|++
T Consensus        79 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~  158 (160)
T cd00876          79 SITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVR  158 (160)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHh
Confidence            99999999999888888877644 68999999999999876777788888999888899999999999999999999987


Q ss_pred             hh
Q 028986          194 CT  195 (200)
Q Consensus       194 ~~  195 (200)
                      .+
T Consensus       159 ~i  160 (160)
T cd00876         159 EI  160 (160)
T ss_pred             hC
Confidence            53

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.97  E-value=3.1e-29  Score=177.06  Aligned_cols=159  Identities=35%  Similarity=0.668  Sum_probs=131.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV  113 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v  113 (200)
                      .||+|+|++|||||||+++|.++.+...+.++.+..+. ..+.+ ++..+.+.+|||+|++.+...+..++.++|++++|
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v   79 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEV-DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC   79 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceE-EEEEE-CCEEEEEEEEeCCCchhhhhccccccCCCCEEEEE
Confidence            58999999999999999999999887777777665543 34444 34558899999999999988888899999999999


Q ss_pred             EeCCCHHhHHHH-HHHHHHHHHcCCCCCeEEEEEeCCCCCCC------------CcCCHHHHHHHHHHcCC-eEEEecCC
Q 028986          114 YDITSPDSFNKA-QYWVKELQKHGSPDIVMALVGNKADLHEK------------REVPAQDGIEYAEKNGM-FFIETSAK  179 (200)
Q Consensus       114 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~S~~  179 (200)
                      ||++++++++.+ ..|+..+... ..+.|+++|+||+|+...            ..+...+.++++...+. .+++|||+
T Consensus        80 ~~~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~  158 (175)
T cd01870          80 FSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAK  158 (175)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccc
Confidence            999999999888 4688877654 457899999999998543            23445677778877765 79999999


Q ss_pred             CCCCHHHHHHHHHHhh
Q 028986          180 TADNINQLFEVLITCT  195 (200)
Q Consensus       180 ~~~~i~~~~~~i~~~~  195 (200)
                      +|.|++++|++|++.+
T Consensus       159 ~~~~v~~lf~~l~~~~  174 (175)
T cd01870         159 TKEGVREVFEMATRAA  174 (175)
T ss_pred             cCcCHHHHHHHHHHHh
Confidence            9999999999998765

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.97  E-value=1.3e-29  Score=180.21  Aligned_cols=164  Identities=20%  Similarity=0.282  Sum_probs=129.3

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEE
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAV  111 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i  111 (200)
                      +.++|+++|++|||||||++++....+... .++.+.......+...++..+.+.+||++|++.+...+..+++++|+++
T Consensus         2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii   80 (183)
T cd04152           2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV   80 (183)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence            468999999999999999999998876543 4555555545455444445589999999999999999999999999999


Q ss_pred             EEEeCCCHHhHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHH------cCCeEEEecCCCCCCH
Q 028986          112 VVYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAEK------NGMFFIETSAKTADNI  184 (200)
Q Consensus       112 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~------~~~~~~~~S~~~~~~i  184 (200)
                      +|+|++++.+++.+..|+..+... ...+.|+++|+||+|+...  ...++..++...      .+++++++||+++.|+
T Consensus        81 ~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi  158 (183)
T cd04152          81 FVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNA--LSVSEVEKLLALHELSASTPWHVQPACAIIGEGL  158 (183)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCcccc--CCHHHHHHHhCccccCCCCceEEEEeecccCCCH
Confidence            999999999998888888776543 2457899999999998542  334444444321      1346899999999999


Q ss_pred             HHHHHHHHHhhccc
Q 028986          185 NQLFEVLITCTSSY  198 (200)
Q Consensus       185 ~~~~~~i~~~~~~~  198 (200)
                      ++++++|.+.+.+.
T Consensus       159 ~~l~~~l~~~l~~~  172 (183)
T cd04152         159 QEGLEKLYEMILKR  172 (183)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999888654

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.97  E-value=2.3e-29  Score=178.45  Aligned_cols=160  Identities=19%  Similarity=0.322  Sum_probs=123.8

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA  110 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  110 (200)
                      ++.+||+++|.++||||||+++|..+.+. .+.++.+....  .+..   ..+.+++||+||++.+...|..+++++|++
T Consensus        15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~--~~~~---~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~i   88 (181)
T PLN00223         15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY---KNISFTVWDVGGQDKIRPLWRHYFQNTQGL   88 (181)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE--EEEE---CCEEEEEEECCCCHHHHHHHHHHhccCCEE
Confidence            45689999999999999999999987765 34566665442  2322   237899999999999999999999999999


Q ss_pred             EEEEeCCCHHhHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHc-----CCeEEEecCCCCCCH
Q 028986          111 VVVYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAEKN-----GMFFIETSAKTADNI  184 (200)
Q Consensus       111 i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~~~S~~~~~~i  184 (200)
                      |+|||++++++++.+..++..+... ...++|+++|+||.|+....  ..++..+.....     .+.++++||++|+|+
T Consensus        89 I~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv  166 (181)
T PLN00223         89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGL  166 (181)
T ss_pred             EEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCC--CHHHHHHHhCccccCCCceEEEeccCCCCCCH
Confidence            9999999999998887777665432 23578999999999986543  333433332211     124668999999999


Q ss_pred             HHHHHHHHHhhccc
Q 028986          185 NQLFEVLITCTSSY  198 (200)
Q Consensus       185 ~~~~~~i~~~~~~~  198 (200)
                      .++|+||.+.+.+.
T Consensus       167 ~e~~~~l~~~~~~~  180 (181)
T PLN00223        167 YEGLDWLSNNIANK  180 (181)
T ss_pred             HHHHHHHHHHHhhc
Confidence            99999999988764

>cd04149 Arf6 Arf6 subfamily

Probab=99.97  E-value=1.3e-29  Score=177.75  Aligned_cols=155  Identities=23%  Similarity=0.381  Sum_probs=121.5

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA  110 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  110 (200)
                      .+.++|+++|+++||||||+++|....+.. +.++.+.+..  .+..   ..+.+++||++|++.+...+..+++.+|++
T Consensus         7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~~--~~~~---~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~i   80 (168)
T cd04149           7 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE--TVTY---KNVKFNVWDVGGQDKIRPLWRHYYTGTQGL   80 (168)
T ss_pred             CCccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccceE--EEEE---CCEEEEEEECCCCHHHHHHHHHHhccCCEE
Confidence            346899999999999999999998876643 4455555443  2222   237899999999999999999999999999


Q ss_pred             EEEEeCCCHHhHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHH-----cCCeEEEecCCCCCCH
Q 028986          111 VVVYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAEK-----NGMFFIETSAKTADNI  184 (200)
Q Consensus       111 i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~S~~~~~~i  184 (200)
                      ++|||++++.+++.+..|+..+... ...++|+++|+||+|+...  ...+++.+++..     ..+.++++||++|.|+
T Consensus        81 i~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv  158 (168)
T cd04149          81 IFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDA--MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGL  158 (168)
T ss_pred             EEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccC--CCHHHHHHHcCCCccCCCcEEEEEeeCCCCCCh
Confidence            9999999999998887777665432 2457899999999998643  345555555421     2346899999999999


Q ss_pred             HHHHHHHHH
Q 028986          185 NQLFEVLIT  193 (200)
Q Consensus       185 ~~~~~~i~~  193 (200)
                      +++|+||.+
T Consensus       159 ~~~~~~l~~  167 (168)
T cd04149         159 YEGLTWLSS  167 (168)
T ss_pred             HHHHHHHhc
Confidence            999999865

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=99.97  E-value=1.1e-31  Score=172.78  Aligned_cols=160  Identities=39%  Similarity=0.677  Sum_probs=145.7

Q ss_pred             EEcCCCCcHHHHHHHHHcCCCC-CCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEEEeC
Q 028986           38 LLGDSGVGKSCIVLRFVRGQFD-PTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDI  116 (200)
Q Consensus        38 i~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~  116 (200)
                      ++|++++|||.|+-++..+.|. .+..++.+.++..+.+.. ++..+++++|||.|++++++....|++.+|+++++||+
T Consensus         2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~-~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi   80 (192)
T KOG0083|consen    2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDM-DDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI   80 (192)
T ss_pred             ccccCccCceEEEEEeccCceecCceeeeeeeccccceecc-CCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence            6899999999999888877664 456678888887777766 44559999999999999999999999999999999999


Q ss_pred             CCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHhhc
Q 028986          117 TSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLITCTS  196 (200)
Q Consensus       117 ~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~~~  196 (200)
                      .+..||++++.|+..+.+.....+.+.+++||+|+..++.+..++.+++++.+++|++++|+++|.|++..|-.|.+.+.
T Consensus        81 ankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~  160 (192)
T KOG0083|consen   81 ANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELK  160 (192)
T ss_pred             ccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHH
Confidence            99999999999999999988888899999999999998999999999999999999999999999999999999998877


Q ss_pred             cc
Q 028986          197 SY  198 (200)
Q Consensus       197 ~~  198 (200)
                      ++
T Consensus       161 k~  162 (192)
T KOG0083|consen  161 KL  162 (192)
T ss_pred             Hh
Confidence            64

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=2.7e-29  Score=163.45  Aligned_cols=165  Identities=39%  Similarity=0.712  Sum_probs=151.9

Q ss_pred             CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccE
Q 028986           30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAV  109 (200)
Q Consensus        30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~  109 (200)
                      ..+.+|.+|+|+-|+|||.|++.+...+|....+.+++..+..+.+.+ .+..+++++|||.|+++++.....|++.+-+
T Consensus         8 ysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriiev-sgqkiklqiwdtagqerfravtrsyyrgaag   86 (215)
T KOG0097|consen    8 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEV-SGQKIKLQIWDTAGQERFRAVTRSYYRGAAG   86 (215)
T ss_pred             hhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEe-cCcEEEEEEeecccHHHHHHHHHHHhccccc
Confidence            356789999999999999999999999998888889999988877777 4555999999999999999999999999999


Q ss_pred             EEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Q 028986          110 AVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFE  189 (200)
Q Consensus       110 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~  189 (200)
                      .+.|||+..+.+++.+..|+...+....++..+++++||.|+...+.+..+++++|+++.+..++++|+++|.++++.|-
T Consensus        87 almvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nvedafl  166 (215)
T KOG0097|consen   87 ALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFL  166 (215)
T ss_pred             eeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHH
Confidence            99999999999999999999999888888899999999999999999999999999999999999999999999999886


Q ss_pred             HHHHhh
Q 028986          190 VLITCT  195 (200)
Q Consensus       190 ~i~~~~  195 (200)
                      .-.+++
T Consensus       167 e~akki  172 (215)
T KOG0097|consen  167 ETAKKI  172 (215)
T ss_pred             HHHHHH
Confidence            655554

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.97  E-value=9.9e-30  Score=179.61  Aligned_cols=158  Identities=21%  Similarity=0.346  Sum_probs=122.1

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA  110 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  110 (200)
                      +..+||+++|++|||||||+++|..+.+. .+.++.+.....  ...   ..+.+.+||++|++.+...+..+++++|++
T Consensus        11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~~--~~~---~~~~l~l~D~~G~~~~~~~~~~~~~~ad~i   84 (175)
T smart00177       11 NKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVET--VTY---KNISFTVWDVGGQDKIRPLWRHYYTNTQGL   84 (175)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceEE--EEE---CCEEEEEEECCCChhhHHHHHHHhCCCCEE
Confidence            44689999999999999999999877664 345566655432  222   237899999999999999999999999999


Q ss_pred             EEEEeCCCHHhHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHH-----HcCCeEEEecCCCCCCH
Q 028986          111 VVVYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAE-----KNGMFFIETSAKTADNI  184 (200)
Q Consensus       111 i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~i  184 (200)
                      |+|+|++++.+++....|+..+... ...++|+++|+||.|+.+..  ..+++.....     ...+.++++||++|.|+
T Consensus        85 i~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv  162 (175)
T smart00177       85 IFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM--KAAEITEKLGLHSIRDRNWYIQPTCATSGDGL  162 (175)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC--CHHHHHHHhCccccCCCcEEEEEeeCCCCCCH
Confidence            9999999999999888777776543 24578999999999986432  2333333221     12335778999999999


Q ss_pred             HHHHHHHHHhhc
Q 028986          185 NQLFEVLITCTS  196 (200)
Q Consensus       185 ~~~~~~i~~~~~  196 (200)
                      +++|+||.+.+.
T Consensus       163 ~e~~~~l~~~~~  174 (175)
T smart00177      163 YEGLTWLSNNLK  174 (175)
T ss_pred             HHHHHHHHHHhc
Confidence            999999988754

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd04158 ARD1 ARD1 subfamily

Probab=99.97  E-value=5.4e-29  Score=174.97  Aligned_cols=156  Identities=21%  Similarity=0.349  Sum_probs=124.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEEE
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVY  114 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~  114 (200)
                      ||+++|+++||||||+++|.+..+.. +.++.+..+.  .+..   ..+.+.+||+||++.+...+..+++.+|++++|+
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~--~~~~---~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~   74 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE--TVEY---KNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVV   74 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE--EEEE---CCEEEEEEECCCChhcchHHHHHhccCCEEEEEE
Confidence            68999999999999999999986643 4555554443  2222   2378999999999988889999999999999999


Q ss_pred             eCCCHHhHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcC------CeEEEecCCCCCCHHHH
Q 028986          115 DITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNG------MFFIETSAKTADNINQL  187 (200)
Q Consensus       115 d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~------~~~~~~S~~~~~~i~~~  187 (200)
                      |++++.+++.+..|+..+.+. ...+.|+++|+||.|+..  ....+++.+++...+      +.++++||++|.|++++
T Consensus        75 D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~  152 (169)
T cd04158          75 DSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG--ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEG  152 (169)
T ss_pred             eCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc--CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHH
Confidence            999999999998888887653 234689999999999854  345666666654222      36889999999999999


Q ss_pred             HHHHHHhhccc
Q 028986          188 FEVLITCTSSY  198 (200)
Q Consensus       188 ~~~i~~~~~~~  198 (200)
                      |+||.+.+.+.
T Consensus       153 f~~l~~~~~~~  163 (169)
T cd04158         153 LDWLSRQLVAA  163 (169)
T ss_pred             HHHHHHHHhhc
Confidence            99999887653

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.97  E-value=1.4e-28  Score=177.04  Aligned_cols=160  Identities=29%  Similarity=0.527  Sum_probs=129.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEEE
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVY  114 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~  114 (200)
                      ||+++|++|||||||+++|+...+...+.++... .....+.+ .+..+.+.+||++|+..+...+..++..+|++++||
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~-~~~~~~~~-~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~   78 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEE-MHRKEYEV-GGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVY   78 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhh-heeEEEEE-CCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEE
Confidence            6899999999999999999998887766655543 33344444 344578999999999988888888999999999999


Q ss_pred             eCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCC-CCcCCHHHHHHHHH-HcCCeEEEecCCCCCCHHHHHHHH
Q 028986          115 DITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHE-KREVPAQDGIEYAE-KNGMFFIETSAKTADNINQLFEVL  191 (200)
Q Consensus       115 d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~-~~~~~~~~~~~~~~-~~~~~~~~~S~~~~~~i~~~~~~i  191 (200)
                      |++++.+++.+..|+..+.... ..++|+++|+||+|+.. ...+..+...+... ..+++++++|+++|.|++++|++|
T Consensus        79 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l  158 (198)
T cd04147          79 AVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKEL  158 (198)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHH
Confidence            9999999999999988877654 35799999999999865 34444444444443 456789999999999999999999


Q ss_pred             HHhhc
Q 028986          192 ITCTS  196 (200)
Q Consensus       192 ~~~~~  196 (200)
                      ++.+.
T Consensus       159 ~~~~~  163 (198)
T cd04147         159 LRQAN  163 (198)
T ss_pred             HHHhh
Confidence            98765

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04129 Rho2 Rho2 subfamily

Probab=99.97  E-value=2.1e-28  Score=174.59  Aligned_cols=161  Identities=33%  Similarity=0.608  Sum_probs=131.2

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV  113 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v  113 (200)
                      .||+|+|++|+|||||+++|..+.+.+.+.++....+. ..+.. ++..+.+.+||++|++.+......++..+|+++++
T Consensus         2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv   79 (187)
T cd04129           2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYV-TDCRV-DGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIG   79 (187)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEE-EEEEE-CCEEEEEEEEECCCChhccccchhhcCCCCEEEEE
Confidence            58999999999999999999987776666665554443 33444 34457899999999988877777778899999999


Q ss_pred             EeCCCHHhHHHHH-HHHHHHHHcCCCCCeEEEEEeCCCCCC----------CCcCCHHHHHHHHHHcCC-eEEEecCCCC
Q 028986          114 YDITSPDSFNKAQ-YWVKELQKHGSPDIVMALVGNKADLHE----------KREVPAQDGIEYAEKNGM-FFIETSAKTA  181 (200)
Q Consensus       114 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~----------~~~~~~~~~~~~~~~~~~-~~~~~S~~~~  181 (200)
                      ||+++.++++.+. .|+..+... ..+.|+++|+||+|+..          .+.+..++...+++..++ .+++|||++|
T Consensus        80 ~~i~~~~s~~~~~~~~~~~i~~~-~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~  158 (187)
T cd04129          80 FAVDTPDSLENVRTKWIEEVRRY-CPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTG  158 (187)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCC
Confidence            9999999999885 699988765 34699999999999854          234556777888888885 7999999999


Q ss_pred             CCHHHHHHHHHHhhcc
Q 028986          182 DNINQLFEVLITCTSS  197 (200)
Q Consensus       182 ~~i~~~~~~i~~~~~~  197 (200)
                      .|++++|+++.+.+..
T Consensus       159 ~~v~~~f~~l~~~~~~  174 (187)
T cd04129         159 EGVDDVFEAATRAALL  174 (187)
T ss_pred             CCHHHHHHHHHHHHhc
Confidence            9999999999977654

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=99.97  E-value=5.2e-29  Score=177.39  Aligned_cols=164  Identities=34%  Similarity=0.548  Sum_probs=148.2

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEE
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAV  111 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i  111 (200)
                      ..+||+++|.+|+|||+|..++....|...+.++.+..+ .+.+.+. +..+.+.++||+|++++......++..+|+++
T Consensus         2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y-~k~~~v~-~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~   79 (196)
T KOG0395|consen    2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSY-RKELTVD-GEVCMLEILDTAGQEEFSAMRDLYIRNGDGFL   79 (196)
T ss_pred             CceEEEEECCCCCCcchheeeecccccccccCCCccccc-eEEEEEC-CEEEEEEEEcCCCcccChHHHHHhhccCcEEE
Confidence            357999999999999999999999999999998888544 5556665 66689999999999999999999999999999


Q ss_pred             EEEeCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Q 028986          112 VVYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEV  190 (200)
Q Consensus       112 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~  190 (200)
                      +||+++++.||+.+..++..+.+.. ...+|+++|+||+|+...+++..++...++..++++++|+||+.+.+++++|..
T Consensus        80 lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~  159 (196)
T KOG0395|consen   80 LVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYE  159 (196)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHH
Confidence            9999999999999999999985543 456899999999999998999999999999999999999999999999999999


Q ss_pred             HHHhhcc
Q 028986          191 LITCTSS  197 (200)
Q Consensus       191 i~~~~~~  197 (200)
                      |++.+..
T Consensus       160 L~r~~~~  166 (196)
T KOG0395|consen  160 LVREIRL  166 (196)
T ss_pred             HHHHHHh
Confidence            9987764

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.97  E-value=1.9e-28  Score=173.87  Aligned_cols=162  Identities=35%  Similarity=0.574  Sum_probs=135.2

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV  113 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v  113 (200)
                      .||+++|++|+|||||+++|.+..+...+.++....+ ...... ++..+.+.+||+||++++...+..++..+|+++++
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v   79 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRY-KGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILV   79 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEE-CCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEE
Confidence            5899999999999999999999877665555554443 233334 33447899999999999999999999999999999


Q ss_pred             EeCCCHHhHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Q 028986          114 YDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI  192 (200)
Q Consensus       114 ~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~  192 (200)
                      ||.++..+++.+..|+..+.+. ...+.|+++|+||+|+...+....++...++..++++++++|++++.|+.++|.+|.
T Consensus        80 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~  159 (180)
T cd04137          80 YSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLI  159 (180)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence            9999999999998888877654 345789999999999976666666677778888889999999999999999999999


Q ss_pred             Hhhcc
Q 028986          193 TCTSS  197 (200)
Q Consensus       193 ~~~~~  197 (200)
                      +.+..
T Consensus       160 ~~~~~  164 (180)
T cd04137         160 EEIEK  164 (180)
T ss_pred             HHHHH
Confidence            88764

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.97  E-value=1.7e-29  Score=175.73  Aligned_cols=152  Identities=19%  Similarity=0.364  Sum_probs=116.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV  113 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v  113 (200)
                      +||+++|.++||||||++++..+.+.. +.++.+....  .+..   ..+.+.+||++|++++...+..+++++|++++|
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~~-~~pt~g~~~~--~~~~---~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v   74 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY---KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV   74 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCcc-cCCCCCcceE--EEEE---CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence            589999999999999999998877653 5556655442  2222   237899999999999999999999999999999


Q ss_pred             EeCCCHHhHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHH-----HcCCeEEEecCCCCCCHHHH
Q 028986          114 YDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAE-----KNGMFFIETSAKTADNINQL  187 (200)
Q Consensus       114 ~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~i~~~  187 (200)
                      +|++++.+++.+..|+..+... .....|+++++||.|+....  ..+++.+...     ...+.++++||++|.|++++
T Consensus        75 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~  152 (159)
T cd04150          75 VDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAM--SAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEG  152 (159)
T ss_pred             EeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCC--CHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHH
Confidence            9999999999888777766432 23468999999999985432  2223222221     12345789999999999999


Q ss_pred             HHHHHH
Q 028986          188 FEVLIT  193 (200)
Q Consensus       188 ~~~i~~  193 (200)
                      |++|.+
T Consensus       153 ~~~l~~  158 (159)
T cd04150         153 LDWLSN  158 (159)
T ss_pred             HHHHhc
Confidence            999864

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.97  E-value=1.1e-29  Score=177.47  Aligned_cols=153  Identities=20%  Similarity=0.297  Sum_probs=123.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEEE
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVY  114 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~  114 (200)
                      .|+++|++|||||||+++|.+..+...+.++.+...  ..  +. ...+++.+||++|++.+...+..+++++|++++||
T Consensus         1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~--~~--i~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~   75 (164)
T cd04162           1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS--VA--IP-TQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVV   75 (164)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce--EE--Ee-eCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEE
Confidence            389999999999999999999877766667766543  22  22 23378999999999999999999999999999999


Q ss_pred             eCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCH----HHHHHHHHHcCCeEEEecCCC------CCCH
Q 028986          115 DITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPA----QDGIEYAEKNGMFFIETSAKT------ADNI  184 (200)
Q Consensus       115 d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~----~~~~~~~~~~~~~~~~~S~~~------~~~i  184 (200)
                      |.+++.++...+.|+..+.... .++|+++|+||.|+...+....    ..+..++++.++.++++||++      ++|+
T Consensus        76 D~t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v  154 (164)
T cd04162          76 DSADSERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAV  154 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHH
Confidence            9999999999888888876543 6899999999999866543221    123455566678899998888      9999


Q ss_pred             HHHHHHHHH
Q 028986          185 NQLFEVLIT  193 (200)
Q Consensus       185 ~~~~~~i~~  193 (200)
                      +++|+.++.
T Consensus       155 ~~~~~~~~~  163 (164)
T cd04162         155 KDLLSQLIN  163 (164)
T ss_pred             HHHHHHHhc
Confidence            999998864

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd04154 Arl2 Arl2 subfamily

Probab=99.97  E-value=1.1e-28  Score=174.05  Aligned_cols=157  Identities=22%  Similarity=0.308  Sum_probs=122.9

Q ss_pred             CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCcc
Q 028986           29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAA  108 (200)
Q Consensus        29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d  108 (200)
                      ++...++|+++|++|||||||+++|.+..+. .+.++.+..  ...+.+.   .+.+.+||+||++.+...+..+++.+|
T Consensus        10 ~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~-~~~~t~g~~--~~~~~~~---~~~l~l~D~~G~~~~~~~~~~~~~~~d   83 (173)
T cd04154          10 LKEREMRILILGLDNAGKTTILKKLLGEDID-TISPTLGFQ--IKTLEYE---GYKLNIWDVGGQKTLRPYWRNYFESTD   83 (173)
T ss_pred             cCCCccEEEEECCCCCCHHHHHHHHccCCCC-CcCCccccc--eEEEEEC---CEEEEEEECCCCHHHHHHHHHHhCCCC
Confidence            3456689999999999999999999987543 344454432  2333343   278999999999988888899999999


Q ss_pred             EEEEEEeCCCHHhHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHH-----HcCCeEEEecCCCCC
Q 028986          109 VAVVVYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAE-----KNGMFFIETSAKTAD  182 (200)
Q Consensus       109 ~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~  182 (200)
                      ++++|+|++++.+++....|+..+... ...++|+++|+||+|+.+..  ..+++.+++.     ..+++++++||++|.
T Consensus        84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~  161 (173)
T cd04154          84 ALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGAL--SEEEIREALELDKISSHHWRIQPCSAVTGE  161 (173)
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCC--CHHHHHHHhCccccCCCceEEEeccCCCCc
Confidence            999999999999998888787776442 34679999999999986543  3455555543     245689999999999


Q ss_pred             CHHHHHHHHHH
Q 028986          183 NINQLFEVLIT  193 (200)
Q Consensus       183 ~i~~~~~~i~~  193 (200)
                      |++++|++|++
T Consensus       162 gi~~l~~~l~~  172 (173)
T cd04154         162 GLLQGIDWLVD  172 (173)
T ss_pred             CHHHHHHHHhc
Confidence            99999999864

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.97  E-value=4.4e-28  Score=176.64  Aligned_cols=166  Identities=29%  Similarity=0.533  Sum_probs=140.2

Q ss_pred             CCCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCc
Q 028986           28 DAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGA  107 (200)
Q Consensus        28 ~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~  107 (200)
                      .+....+||+++|++|||||||++++..+.+.+.+.++.+.++....+... +..+.+.+||++|++.+...+..++.++
T Consensus         4 ~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~i~i~~~Dt~g~~~~~~~~~~~~~~~   82 (215)
T PTZ00132          4 MDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTN-CGPICFNVWDTAGQEKFGGLRDGYYIKG   82 (215)
T ss_pred             ccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEEC-CeEEEEEEEECCCchhhhhhhHHHhccC
Confidence            445667899999999999999999988888888888888888776666553 4458999999999999888888899999


Q ss_pred             cEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHH
Q 028986          108 AVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQL  187 (200)
Q Consensus       108 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~  187 (200)
                      +++++|||++++.++..+..|+..+... ..++|+++++||+|+... .... +...++...++.++++|++++.|++++
T Consensus        83 ~~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~i~lv~nK~Dl~~~-~~~~-~~~~~~~~~~~~~~e~Sa~~~~~v~~~  159 (215)
T PTZ00132         83 QCAIIMFDVTSRITYKNVPNWHRDIVRV-CENIPIVLVGNKVDVKDR-QVKA-RQITFHRKKNLQYYDISAKSNYNFEKP  159 (215)
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHh-CCCCCEEEEEECccCccc-cCCH-HHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence            9999999999999999999999988766 357899999999998543 2333 334677778889999999999999999


Q ss_pred             HHHHHHhhcc
Q 028986          188 FEVLITCTSS  197 (200)
Q Consensus       188 ~~~i~~~~~~  197 (200)
                      |.+|++.+..
T Consensus       160 f~~ia~~l~~  169 (215)
T PTZ00132        160 FLWLARRLTN  169 (215)
T ss_pred             HHHHHHHHhh
Confidence            9999988754

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.97  E-value=1.6e-28  Score=174.33  Aligned_cols=161  Identities=20%  Similarity=0.330  Sum_probs=122.8

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA  110 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  110 (200)
                      ++.+||+++|+++||||||++++..+.+.. +.++.+..+.  .+..   ..+.+++||++|++.+...+..+++.+|++
T Consensus        15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~~---~~~~~~l~D~~G~~~~~~~~~~~~~~ad~i   88 (182)
T PTZ00133         15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVEY---KNLKFTMWDVGGQDKLRPLWRHYYQNTNGL   88 (182)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEEE---CCEEEEEEECCCCHhHHHHHHHHhcCCCEE
Confidence            446899999999999999999998877654 4556655443  2332   237899999999999999999999999999


Q ss_pred             EEEEeCCCHHhHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHH-----HcCCeEEEecCCCCCCH
Q 028986          111 VVVYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAE-----KNGMFFIETSAKTADNI  184 (200)
Q Consensus       111 i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~i  184 (200)
                      |+|+|++++.+++....++..+... ...++|+++|+||.|+.+..  ..+++.....     ...+.++++||++|.|+
T Consensus        89 I~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv  166 (182)
T PTZ00133         89 IFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAM--STTEVTEKLGLHSVRQRNWYIQGCCATTAQGL  166 (182)
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCC--CHHHHHHHhCCCcccCCcEEEEeeeCCCCCCH
Confidence            9999999999998887777665432 23468999999999985432  2333322221     12235779999999999


Q ss_pred             HHHHHHHHHhhcccC
Q 028986          185 NQLFEVLITCTSSYC  199 (200)
Q Consensus       185 ~~~~~~i~~~~~~~~  199 (200)
                      +++|++|.+.+.+-+
T Consensus       167 ~e~~~~l~~~i~~~~  181 (182)
T PTZ00133        167 YEGLDWLSANIKKSM  181 (182)
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999998876543

>cd00157 Rho Rho (Ras homology) family

Probab=99.96  E-value=4.2e-28  Score=170.55  Aligned_cols=157  Identities=33%  Similarity=0.684  Sum_probs=127.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV  113 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v  113 (200)
                      +||+++|++|||||||+++|++..+...+.++....+ ...... .+..+.+++||+||++++......+++.+|++++|
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v   78 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNY-SATVTV-DGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLIC   78 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-EEEEEE-CCEEEEEEEEeCCCcccccccchhhcCCCCEEEEE
Confidence            5899999999999999999999887555555554333 333333 45558899999999998888888888999999999


Q ss_pred             EeCCCHHhHHHH-HHHHHHHHHcCCCCCeEEEEEeCCCCCCCC-----------cCCHHHHHHHHHHcCC-eEEEecCCC
Q 028986          114 YDITSPDSFNKA-QYWVKELQKHGSPDIVMALVGNKADLHEKR-----------EVPAQDGIEYAEKNGM-FFIETSAKT  180 (200)
Q Consensus       114 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~-----------~~~~~~~~~~~~~~~~-~~~~~S~~~  180 (200)
                      ||++++.++... ..|+..+... ..+.|+++|+||+|+....           .+..++..+++..+++ +++++|+++
T Consensus        79 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~  157 (171)
T cd00157          79 FSVDSPSSFENVKTKWIPEIRHY-CPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALT  157 (171)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCC
Confidence            999999988766 5577777665 3489999999999986554           2356677788888887 899999999


Q ss_pred             CCCHHHHHHHHHH
Q 028986          181 ADNINQLFEVLIT  193 (200)
Q Consensus       181 ~~~i~~~~~~i~~  193 (200)
                      +.|+.+++++|++
T Consensus       158 ~~gi~~l~~~i~~  170 (171)
T cd00157         158 QEGVKEVFEEAIR  170 (171)
T ss_pred             CCCHHHHHHHHhh
Confidence            9999999999876

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd01893 Miro1 Miro1 subfamily

Probab=99.96  E-value=5.8e-28  Score=169.26  Aligned_cols=159  Identities=25%  Similarity=0.378  Sum_probs=121.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV  113 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v  113 (200)
                      +||+++|++|||||||+++|.++.+...+..+ ...+ .....+ ++..+++.+||+||.+.+...+..++..+|++++|
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~-~~~~-~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv   77 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRV-LPEI-TIPADV-TPERVPTTIVDTSSRPQDRANLAAEIRKANVICLV   77 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCccCCCc-ccce-Eeeeee-cCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEE
Confidence            48999999999999999999998876553332 2222 222233 34458999999999988777777778999999999


Q ss_pred             EeCCCHHhHHHH-HHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcC--CHHHHHHHHHHcC--CeEEEecCCCCCCHHHHH
Q 028986          114 YDITSPDSFNKA-QYWVKELQKHGSPDIVMALVGNKADLHEKREV--PAQDGIEYAEKNG--MFFIETSAKTADNINQLF  188 (200)
Q Consensus       114 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~--~~~~~~~~~~~~~--~~~~~~S~~~~~~i~~~~  188 (200)
                      ||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+....  ..++...++..+.  .+++++||+++.|++++|
T Consensus        78 ~d~~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf  156 (166)
T cd01893          78 YSVDRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVF  156 (166)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHH
Confidence            999999999987 46888887664 48999999999999665432  1233333333332  379999999999999999


Q ss_pred             HHHHHhhc
Q 028986          189 EVLITCTS  196 (200)
Q Consensus       189 ~~i~~~~~  196 (200)
                      +.+.+.+.
T Consensus       157 ~~~~~~~~  164 (166)
T cd01893         157 YYAQKAVL  164 (166)
T ss_pred             HHHHHHhc
Confidence            99988764

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.96  E-value=4.8e-28  Score=173.62  Aligned_cols=149  Identities=25%  Similarity=0.350  Sum_probs=125.1

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEec----CCcEEEEEEEeCCChhhhhhcccccccCccE
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQ----DSTTVKFEIWDTAGQERYAALAPLYYRGAAV  109 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~  109 (200)
                      +||+++|+++||||||+++|.++.+...+.++.+.++..+.+.+.    ++..+.+.+||++|++++..++..+++++|+
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~   80 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG   80 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence            589999999999999999999999888888888877766666654    2456899999999999999999999999999


Q ss_pred             EEEEEeCCCHHhHHHHHHHHHHHHHcC-------------------CCCCeEEEEEeCCCCCCCCcCCHHH----HHHHH
Q 028986          110 AVVVYDITSPDSFNKAQYWVKELQKHG-------------------SPDIVMALVGNKADLHEKREVPAQD----GIEYA  166 (200)
Q Consensus       110 ~i~v~d~~~~~s~~~~~~~~~~i~~~~-------------------~~~~p~iiv~nK~D~~~~~~~~~~~----~~~~~  166 (200)
                      +|+|||++++.|++.+..|+..+....                   ...+|+++|+||.|+.+.+.+..+.    ...++
T Consensus        81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia  160 (202)
T cd04102          81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA  160 (202)
T ss_pred             EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence            999999999999999999999986531                   3468999999999997665444432    34567


Q ss_pred             HHcCCeEEEecCCCCC
Q 028986          167 EKNGMFFIETSAKTAD  182 (200)
Q Consensus       167 ~~~~~~~~~~S~~~~~  182 (200)
                      .+.+++.++.++.++.
T Consensus       161 ~~~~~~~i~~~c~~~~  176 (202)
T cd04102         161 EQGNAEEINLNCTNGR  176 (202)
T ss_pred             HhcCCceEEEecCCcc
Confidence            7889999998888664

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>cd04157 Arl6 Arl6 subfamily

Probab=99.96  E-value=5.4e-28  Score=168.59  Aligned_cols=153  Identities=18%  Similarity=0.234  Sum_probs=116.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCC-CCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQF-DPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV  113 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v  113 (200)
                      +|+++|+++||||||+++|.+..+ ...+.++.+....  .+..   ..+++.+||+||++++...+..+++.+|++++|
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~--~~~~---~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   75 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE--SFEK---GNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFV   75 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE--EEEE---CCEEEEEEECCCCHhhHHHHHHHHccCCEEEEE
Confidence            589999999999999999998753 4445556554332  2222   237899999999999999999999999999999


Q ss_pred             EeCCCHHhHHHHHHHHHHHHHc---CCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHH-----HcCCeEEEecCCCCCCHH
Q 028986          114 YDITSPDSFNKAQYWVKELQKH---GSPDIVMALVGNKADLHEKREVPAQDGIEYAE-----KNGMFFIETSAKTADNIN  185 (200)
Q Consensus       114 ~d~~~~~s~~~~~~~~~~i~~~---~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~i~  185 (200)
                      +|++++.++.....|+..+...   ...++|+++|+||+|+....  ..++......     ...+.++++||++|.|++
T Consensus        76 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~--~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~  153 (162)
T cd04157          76 IDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDAL--TAVKITQLLGLENIKDKPWHIFASNALTGEGLD  153 (162)
T ss_pred             EeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCC--CHHHHHHHhCCccccCceEEEEEeeCCCCCchH
Confidence            9999999998888888776543   23579999999999986532  2223222221     123458999999999999


Q ss_pred             HHHHHHHHh
Q 028986          186 QLFEVLITC  194 (200)
Q Consensus       186 ~~~~~i~~~  194 (200)
                      ++|++|.++
T Consensus       154 ~~~~~l~~~  162 (162)
T cd04157         154 EGVQWLQAQ  162 (162)
T ss_pred             HHHHHHhcC
Confidence            999998753

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=99.96  E-value=1.3e-28  Score=171.81  Aligned_cols=164  Identities=33%  Similarity=0.656  Sum_probs=146.1

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA  110 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  110 (200)
                      ...+|++|||+.++|||+|+..+..+.|+..+.|+....+ ...+.+.++..+.+.+|||.|+++|..++...+.++|++
T Consensus         2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdny-s~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvf   80 (198)
T KOG0393|consen    2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNY-SANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVF   80 (198)
T ss_pred             ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccc-eEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEE
Confidence            3568999999999999999999999999999999998666 445566568889999999999999999998899999999


Q ss_pred             EEEEeCCCHHhHHHH-HHHHHHHHHcCCCCCeEEEEEeCCCCCCC------------CcCCHHHHHHHHHHcCC-eEEEe
Q 028986          111 VVVYDITSPDSFNKA-QYWVKELQKHGSPDIVMALVGNKADLHEK------------REVPAQDGIEYAEKNGM-FFIET  176 (200)
Q Consensus       111 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~  176 (200)
                      ++||++.++.|++++ .+|+.+++.++ +++|+|+|++|.|+..+            ..+..++...++++.|+ .|++|
T Consensus        81 l~cfsv~~p~S~~nv~~kW~pEi~~~c-p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~Ec  159 (198)
T KOG0393|consen   81 LLCFSVVSPESFENVKSKWIPEIKHHC-PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLEC  159 (198)
T ss_pred             EEEEEcCChhhHHHHHhhhhHHHHhhC-CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeee
Confidence            999999999999887 89999999885 78999999999999642            35778899999999985 79999


Q ss_pred             cCCCCCCHHHHHHHHHHhhc
Q 028986          177 SAKTADNINQLFEVLITCTS  196 (200)
Q Consensus       177 S~~~~~~i~~~~~~i~~~~~  196 (200)
                      ||++..|++++|+..+....
T Consensus       160 Sa~tq~~v~~vF~~a~~~~l  179 (198)
T KOG0393|consen  160 SALTQKGVKEVFDEAIRAAL  179 (198)
T ss_pred             hhhhhCCcHHHHHHHHHHHh
Confidence            99999999999999887764

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.96  E-value=2e-27  Score=167.70  Aligned_cols=153  Identities=20%  Similarity=0.351  Sum_probs=118.5

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEE
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVV  112 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~  112 (200)
                      .++|+++|++|+|||||+++|..+.+.. ..++.+..+.  .....   .+++.+||+||++.+...+..+++.+|++++
T Consensus        15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~~---~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~   88 (174)
T cd04153          15 EYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE--EIVYK---NIRFLMWDIGGQESLRSSWNTYYTNTDAVIL   88 (174)
T ss_pred             ccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE--EEEEC---CeEEEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence            5799999999999999999999877654 4555555443  22232   3789999999999999999999999999999


Q ss_pred             EEeCCCHHhHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCcCCHHHHHHHH-----HHcCCeEEEecCCCCCCHHH
Q 028986          113 VYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYA-----EKNGMFFIETSAKTADNINQ  186 (200)
Q Consensus       113 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~i~~  186 (200)
                      |+|+++++++.....++..+... ...++|+++++||+|+...  ...++..+..     ...+++++++||+++.|+++
T Consensus        89 V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~--~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e  166 (174)
T cd04153          89 VIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGA--MTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPE  166 (174)
T ss_pred             EEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEecccCCCCCHHH
Confidence            99999998888777766665443 2356899999999998653  2333332222     22456799999999999999


Q ss_pred             HHHHHHH
Q 028986          187 LFEVLIT  193 (200)
Q Consensus       187 ~~~~i~~  193 (200)
                      +|++|.+
T Consensus       167 ~~~~l~~  173 (174)
T cd04153         167 GLDWIAS  173 (174)
T ss_pred             HHHHHhc
Confidence            9999875

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.96  E-value=1.1e-27  Score=167.95  Aligned_cols=151  Identities=21%  Similarity=0.246  Sum_probs=118.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEEE
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVY  114 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~  114 (200)
                      +|+++|++|||||||+++|.+. +...+.++.+...  ..+...   .+.+++||+||++.+...+..+++++|++++||
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~--~~~~~~---~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~   74 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTP--TKLRLD---KYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVV   74 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceE--EEEEEC---CEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEE
Confidence            4899999999999999999987 5555666666543  233332   278999999999999999999999999999999


Q ss_pred             eCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCcCCHHHHH------HHHHHc--CCeEEEecCCCC----
Q 028986          115 DITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGI------EYAEKN--GMFFIETSAKTA----  181 (200)
Q Consensus       115 d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~------~~~~~~--~~~~~~~S~~~~----  181 (200)
                      |++++.+++.+..|+..+.... ..++|+++|+||.|+.....  ..+..      .++++.  .+.+++|||++|    
T Consensus        75 D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~--~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~  152 (167)
T cd04161          75 DSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALL--GADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKK  152 (167)
T ss_pred             ECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCC--HHHHHHhcCcccccCCCCceEEEEEeEceeCCCCc
Confidence            9999999999998988876543 35789999999999866542  22222      223222  356888999998    


Q ss_pred             --CCHHHHHHHHHH
Q 028986          182 --DNINQLFEVLIT  193 (200)
Q Consensus       182 --~~i~~~~~~i~~  193 (200)
                        .|+++.|+||.+
T Consensus       153 ~~~g~~~~~~wl~~  166 (167)
T cd04161         153 IDPSIVEGLRWLLA  166 (167)
T ss_pred             cccCHHHHHHHHhc
Confidence              899999999975

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd00879 Sar1 Sar1 subfamily

Probab=99.96  E-value=3.1e-27  Score=169.04  Aligned_cols=157  Identities=18%  Similarity=0.277  Sum_probs=122.9

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA  110 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  110 (200)
                      .+..+|+++|++|||||||+++|.+..+. .+.++.+...  ..+.+..   ..+.+||+||++.+...+..+++.+|++
T Consensus        17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~--~~i~~~~---~~~~l~D~~G~~~~~~~~~~~~~~ad~i   90 (190)
T cd00879          17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTS--EELTIGN---IKFKTFDLGGHEQARRLWKDYFPEVDGI   90 (190)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcce--EEEEECC---EEEEEEECCCCHHHHHHHHHHhccCCEE
Confidence            34689999999999999999999987764 3444444332  2333322   6789999999998888888999999999


Q ss_pred             EEEEeCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHH----------------cCCeE
Q 028986          111 VVVYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAEK----------------NGMFF  173 (200)
Q Consensus       111 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~----------------~~~~~  173 (200)
                      ++|+|+++..+++....|+..+.+.. ..+.|+++++||+|+..  .+..+++++.+..                ..+.+
T Consensus        91 ilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (190)
T cd00879          91 VFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG--AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEV  168 (190)
T ss_pred             EEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC--CcCHHHHHHHhCcccccccccccccccCceeEEE
Confidence            99999999988888877777765432 45699999999999864  3455666665542                22468


Q ss_pred             EEecCCCCCCHHHHHHHHHHhh
Q 028986          174 IETSAKTADNINQLFEVLITCT  195 (200)
Q Consensus       174 ~~~S~~~~~~i~~~~~~i~~~~  195 (200)
                      ++|||+++.|+.++|+||.+.+
T Consensus       169 ~~~Sa~~~~gv~e~~~~l~~~~  190 (190)
T cd00879         169 FMCSVVKRQGYGEAFRWLSQYL  190 (190)
T ss_pred             EEeEecCCCChHHHHHHHHhhC
Confidence            9999999999999999998764

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.95  E-value=2.9e-27  Score=164.67  Aligned_cols=152  Identities=22%  Similarity=0.351  Sum_probs=116.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEEE
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVY  114 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~  114 (200)
                      +|+++|++|||||||+++|.+..+... .++.+...  ..+..  ...+.+.+||++|++.+...+..++..+|++++|+
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-~~t~~~~~--~~~~~--~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~   75 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVTT-IPTVGFNV--EMLQL--EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVV   75 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCcccc-cCccCcce--EEEEe--CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEE
Confidence            589999999999999999999876533 44444333  22332  23378999999999988888888999999999999


Q ss_pred             eCCCHHhHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCcCCHHHHHHHH------HHcCCeEEEecCCCCCCHHHH
Q 028986          115 DITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYA------EKNGMFFIETSAKTADNINQL  187 (200)
Q Consensus       115 d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~------~~~~~~~~~~S~~~~~~i~~~  187 (200)
                      |++++.++.....|+..+.+. ...+.|+++|+||+|+....  ..+++....      ...++++++|||++|.|++++
T Consensus        76 D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~  153 (160)
T cd04156          76 DSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGAL--TAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEA  153 (160)
T ss_pred             ECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCc--CHHHHHHHcCCcccCCCCcEEEEecccccCCChHHH
Confidence            999999898888887776543 23579999999999985432  223332221      123457999999999999999


Q ss_pred             HHHHHH
Q 028986          188 FEVLIT  193 (200)
Q Consensus       188 ~~~i~~  193 (200)
                      |++|.+
T Consensus       154 ~~~i~~  159 (160)
T cd04156         154 FRKLAS  159 (160)
T ss_pred             HHHHhc
Confidence            999865

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.95  E-value=6e-27  Score=164.15  Aligned_cols=152  Identities=20%  Similarity=0.325  Sum_probs=116.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCC------CCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCcc
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQFD------PTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAA  108 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d  108 (200)
                      +|+++|++|+|||||+++|.+....      ..+.++.+....  .+.+.   ...+.+||+||++.+...+..++..+|
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~---~~~~~l~Dt~G~~~~~~~~~~~~~~~~   75 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIG--TIEVG---NARLKFWDLGGQESLRSLWDKYYAECH   75 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceE--EEEEC---CEEEEEEECCCChhhHHHHHHHhCCCC
Confidence            5899999999999999999864321      122334433332  23332   268999999999999988999999999


Q ss_pred             EEEEEEeCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHH-------cCCeEEEecCCC
Q 028986          109 VAVVVYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAEK-------NGMFFIETSAKT  180 (200)
Q Consensus       109 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~S~~~  180 (200)
                      ++++|+|++++++++....|+..+.+.. ..++|+++|+||+|+...  ...+++..+...       .+++++++||++
T Consensus        76 ~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  153 (167)
T cd04160          76 AIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA--LSVEEIKEVFQDKAEEIGRRDCLVLPVSALE  153 (167)
T ss_pred             EEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC--CCHHHHHHHhccccccccCCceEEEEeeCCC
Confidence            9999999999988888888887765532 457999999999998553  334444444432       245799999999


Q ss_pred             CCCHHHHHHHHHH
Q 028986          181 ADNINQLFEVLIT  193 (200)
Q Consensus       181 ~~~i~~~~~~i~~  193 (200)
                      |.|++++++||.+
T Consensus       154 g~gv~e~~~~l~~  166 (167)
T cd04160         154 GTGVREGIEWLVE  166 (167)
T ss_pred             CcCHHHHHHHHhc
Confidence            9999999999875

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.95  E-value=3.5e-27  Score=163.91  Aligned_cols=151  Identities=23%  Similarity=0.395  Sum_probs=118.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEEE
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVY  114 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~  114 (200)
                      ||+++|++|||||||++++++... ....++.+...  ..+.+.   .+.+.+||+||++.+...+..+++.+|++++|+
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~--~~~~~~---~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   74 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNV--ETVEYK---NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVV   74 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcce--EEEEEC---CEEEEEEECCCChhhHHHHHHHhccCCEEEEEE
Confidence            689999999999999999999873 33344444433  223332   268999999999999989999999999999999


Q ss_pred             eCCCHHhHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHH-----HcCCeEEEecCCCCCCHHHHH
Q 028986          115 DITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAE-----KNGMFFIETSAKTADNINQLF  188 (200)
Q Consensus       115 d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~i~~~~  188 (200)
                      |+++++++.....|+..+... ...+.|+++|+||+|+....  ..++..+...     ...++++++|+++|.|++++|
T Consensus        75 D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~  152 (158)
T cd00878          75 DSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL--SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGL  152 (158)
T ss_pred             ECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc--CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHH
Confidence            999999999888887776553 34689999999999986543  2333333332     235679999999999999999


Q ss_pred             HHHHH
Q 028986          189 EVLIT  193 (200)
Q Consensus       189 ~~i~~  193 (200)
                      ++|..
T Consensus       153 ~~l~~  157 (158)
T cd00878         153 DWLLQ  157 (158)
T ss_pred             HHHhh
Confidence            99875

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd04151 Arl1 Arl1 subfamily

Probab=99.95  E-value=2.3e-27  Score=164.94  Aligned_cols=151  Identities=21%  Similarity=0.350  Sum_probs=112.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEEE
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVY  114 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~  114 (200)
                      ||+++|++++|||||+++|....+.. ..++.+....  .+..   ..+.+++||+||++.+...+..++..+|++++|+
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~---~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~   74 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVE--TVTY---KNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVV   74 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeE--EEEE---CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEE
Confidence            68999999999999999998876643 3344444332  2222   2378999999999999999999999999999999


Q ss_pred             eCCCHHhHHHHHHHHHHH-HHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHH-----HcCCeEEEecCCCCCCHHHHH
Q 028986          115 DITSPDSFNKAQYWVKEL-QKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAE-----KNGMFFIETSAKTADNINQLF  188 (200)
Q Consensus       115 d~~~~~s~~~~~~~~~~i-~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~i~~~~  188 (200)
                      |++++.++.....++..+ ......++|+++|+||+|+....  ...++.....     ..+.+++++|++++.|++++|
T Consensus        75 d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  152 (158)
T cd04151          75 DSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL--SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGM  152 (158)
T ss_pred             ECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC--CHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHH
Confidence            999998887665555544 33334578999999999986433  1222222211     123469999999999999999


Q ss_pred             HHHHH
Q 028986          189 EVLIT  193 (200)
Q Consensus       189 ~~i~~  193 (200)
                      ++|.+
T Consensus       153 ~~l~~  157 (158)
T cd04151         153 DWLVN  157 (158)
T ss_pred             HHHhc
Confidence            99975

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>PLN00023 GTP-binding protein; Provisional

Probab=99.95  E-value=2.2e-26  Score=172.78  Aligned_cols=143  Identities=27%  Similarity=0.476  Sum_probs=121.9

Q ss_pred             CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecC------------CcEEEEEEEeCCChhhh
Q 028986           29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQD------------STTVKFEIWDTAGQERY   96 (200)
Q Consensus        29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~l~D~~g~~~~   96 (200)
                      +....+||+|+|+.|||||||+++|.++.+...+.++.+.++....+.+.+            +..+.++|||++|++.+
T Consensus        17 ~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErf   96 (334)
T PLN00023         17 PPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERY   96 (334)
T ss_pred             CCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhh
Confidence            456678999999999999999999999988888888888887666666532            34588999999999999


Q ss_pred             hhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCC------------CCCeEEEEEeCCCCCCCC---c---CC
Q 028986           97 AALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGS------------PDIVMALVGNKADLHEKR---E---VP  158 (200)
Q Consensus        97 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~------------~~~p~iiv~nK~D~~~~~---~---~~  158 (200)
                      ..++..+++++|++|+|||++++.+++.+..|++.+.....            .++|++||+||+|+...+   .   ..
T Consensus        97 rsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~  176 (334)
T PLN00023         97 KDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNL  176 (334)
T ss_pred             hhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccccccccccccc
Confidence            99999999999999999999999999999999999987531            358999999999996542   2   35


Q ss_pred             HHHHHHHHHHcCC
Q 028986          159 AQDGIEYAEKNGM  171 (200)
Q Consensus       159 ~~~~~~~~~~~~~  171 (200)
                      .++++++|+++++
T Consensus       177 ~e~a~~~A~~~g~  189 (334)
T PLN00023        177 VDAARQWVEKQGL  189 (334)
T ss_pred             HHHHHHHHHHcCC
Confidence            7889999998875

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.95  E-value=2.4e-26  Score=162.09  Aligned_cols=157  Identities=27%  Similarity=0.440  Sum_probs=123.8

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA  110 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  110 (200)
                      .+.++|+++|+.|||||||+++|....... ..||.+...  ..+.+.+   +.+.+||.+|+..++..|..+++++|++
T Consensus        12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g~~~--~~i~~~~---~~~~~~d~gG~~~~~~~w~~y~~~~~~i   85 (175)
T PF00025_consen   12 KKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIGFNI--EEIKYKG---YSLTIWDLGGQESFRPLWKSYFQNADGI   85 (175)
T ss_dssp             TSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESSEEE--EEEEETT---EEEEEEEESSSGGGGGGGGGGHTTESEE
T ss_pred             CcEEEEEEECCCccchHHHHHHhhhccccc-cCccccccc--ceeeeCc---EEEEEEeccccccccccceeecccccee
Confidence            678899999999999999999999865432 444544443  3344433   6899999999999999999999999999


Q ss_pred             EEEEeCCCHHhHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHH------cCCeEEEecCCCCCC
Q 028986          111 VVVYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAEK------NGMFFIETSAKTADN  183 (200)
Q Consensus       111 i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~------~~~~~~~~S~~~~~~  183 (200)
                      |||+|.++.+.+......+..+... ...++|+++++||.|+...  ...+++......      ..+.++.||+.+|.|
T Consensus        86 IfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~--~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~G  163 (175)
T PF00025_consen   86 IFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDA--MSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEG  163 (175)
T ss_dssp             EEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTS--STHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBT
T ss_pred             EEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCc--chhhHHHhhhhhhhcccCCceEEEeeeccCCcC
Confidence            9999999998888887666665443 3458999999999998653  345555544432      345689999999999


Q ss_pred             HHHHHHHHHHhh
Q 028986          184 INQLFEVLITCT  195 (200)
Q Consensus       184 i~~~~~~i~~~~  195 (200)
                      +.+.++||.+++
T Consensus       164 v~e~l~WL~~~~  175 (175)
T PF00025_consen  164 VDEGLEWLIEQI  175 (175)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC
Confidence            999999999874

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.95  E-value=3.3e-26  Score=152.32  Aligned_cols=164  Identities=23%  Similarity=0.307  Sum_probs=128.1

Q ss_pred             CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCcc
Q 028986           29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAA  108 (200)
Q Consensus        29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d  108 (200)
                      .++.+++|+|+|..||||||++++|.+.... ...|+.+  +..++..+..   +++++||..|+...+..|..|+..+|
T Consensus        12 ~kerE~riLiLGLdNsGKTti~~kl~~~~~~-~i~pt~g--f~Iktl~~~~---~~L~iwDvGGq~~lr~~W~nYfestd   85 (185)
T KOG0073|consen   12 LKEREVRILILGLDNSGKTTIVKKLLGEDTD-TISPTLG--FQIKTLEYKG---YTLNIWDVGGQKTLRSYWKNYFESTD   85 (185)
T ss_pred             hhhheeEEEEEecCCCCchhHHHHhcCCCcc-ccCCccc--eeeEEEEecc---eEEEEEEcCCcchhHHHHHHhhhccC
Confidence            4566999999999999999999999997632 2333333  4444444433   78999999999999999999999999


Q ss_pred             EEEEEEeCCCHHhHHHHHHHHHH-HHHcCCCCCeEEEEEeCCCCCCCC---cCC-HHHHHHHHHHcCCeEEEecCCCCCC
Q 028986          109 VAVVVYDITSPDSFNKAQYWVKE-LQKHGSPDIVMALVGNKADLHEKR---EVP-AQDGIEYAEKNGMFFIETSAKTADN  183 (200)
Q Consensus       109 ~~i~v~d~~~~~s~~~~~~~~~~-i~~~~~~~~p~iiv~nK~D~~~~~---~~~-~~~~~~~~~~~~~~~~~~S~~~~~~  183 (200)
                      ++|||+|.+++..++.....+.. +....-.+.|+++++||.|+...-   ++. .-...++++...++++.||+.+|++
T Consensus        86 glIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~  165 (185)
T KOG0073|consen   86 GLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGED  165 (185)
T ss_pred             eEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEecccccc
Confidence            99999999999888877665555 344445578999999999997431   111 1223345566788999999999999


Q ss_pred             HHHHHHHHHHhhccc
Q 028986          184 INQLFEVLITCTSSY  198 (200)
Q Consensus       184 i~~~~~~i~~~~~~~  198 (200)
                      +.+-++||++.+.++
T Consensus       166 l~~gidWL~~~l~~r  180 (185)
T KOG0073|consen  166 LLEGIDWLCDDLMSR  180 (185)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999988764

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.95  E-value=4.1e-26  Score=162.38  Aligned_cols=157  Identities=16%  Similarity=0.196  Sum_probs=119.7

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA  110 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  110 (200)
                      ...++|+++|++|||||||+++|.+..+.. +.++.+...  ..+...   .+++.+||+||+..+...+..++.++|++
T Consensus        15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~~~--~~~~~~---~~~~~~~D~~G~~~~~~~~~~~~~~ad~i   88 (184)
T smart00178       15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHPTS--EELAIG---NIKFTTFDLGGHQQARRLWKDYFPEVNGI   88 (184)
T ss_pred             cccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccccce--EEEEEC---CEEEEEEECCCCHHHHHHHHHHhCCCCEE
Confidence            445899999999999999999999876543 233333322  222222   26899999999998889999999999999


Q ss_pred             EEEEeCCCHHhHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHH------------cCCeEEEec
Q 028986          111 VVVYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAEK------------NGMFFIETS  177 (200)
Q Consensus       111 i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~S  177 (200)
                      ++|+|++++.++.....++..+.+. ...+.|+++|+||.|+..  ....+++.+....            ....+++||
T Consensus        89 i~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~--~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~S  166 (184)
T smart00178       89 VYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY--AASEDELRYALGLTNTTGSKGKVGVRPLEVFMCS  166 (184)
T ss_pred             EEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC--CCCHHHHHHHcCCCcccccccccCCceeEEEEee
Confidence            9999999999898887777766543 235789999999999854  3445555544321            133589999


Q ss_pred             CCCCCCHHHHHHHHHHhh
Q 028986          178 AKTADNINQLFEVLITCT  195 (200)
Q Consensus       178 ~~~~~~i~~~~~~i~~~~  195 (200)
                      ++++.|++++++||.+++
T Consensus       167 a~~~~g~~~~~~wl~~~~  184 (184)
T smart00178      167 VVRRMGYGEGFKWLSQYI  184 (184)
T ss_pred             cccCCChHHHHHHHHhhC
Confidence            999999999999998753

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.95  E-value=1.8e-28  Score=165.54  Aligned_cols=173  Identities=31%  Similarity=0.478  Sum_probs=157.9

Q ss_pred             cCCCCCCCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccc
Q 028986           23 NAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPL  102 (200)
Q Consensus        23 ~~~~~~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~  102 (200)
                      .++.....+..+|++|+|..++||||+|++++.+-|...+..+++.++..+.+.+.... +++.+||++|++++......
T Consensus        10 ~am~e~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Ed-vr~mlWdtagqeEfDaItkA   88 (246)
T KOG4252|consen   10 MAMDETDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIED-VRSMLWDTAGQEEFDAITKA   88 (246)
T ss_pred             CCCCchhhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHH-HHHHHHHhccchhHHHHHHH
Confidence            34455567889999999999999999999999999999999999999988877775544 77899999999999999999


Q ss_pred             cccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCC
Q 028986          103 YYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTAD  182 (200)
Q Consensus       103 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~  182 (200)
                      |++.+.+.++||+.+++.||+....|++.+... ...+|.++|-||+|+.+...+...+++.+++.+++.++.+|++...
T Consensus        89 yyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e-~~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~  167 (246)
T KOG4252|consen   89 YYRGAQASVLVFSTTDRYSFEATLEWYNKVQKE-TERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDF  167 (246)
T ss_pred             HhccccceEEEEecccHHHHHHHHHHHHHHHHH-hccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhh
Confidence            999999999999999999999999999999876 5589999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHhhcc
Q 028986          183 NINQLFEVLITCTSS  197 (200)
Q Consensus       183 ~i~~~~~~i~~~~~~  197 (200)
                      |+.++|.+|++++.+
T Consensus       168 NV~~vF~YLaeK~~q  182 (246)
T KOG4252|consen  168 NVMHVFAYLAEKLTQ  182 (246)
T ss_pred             hhHHHHHHHHHHHHH
Confidence            999999999988764

>PTZ00099 rab6; Provisional

Probab=99.95  E-value=1.1e-25  Score=158.59  Aligned_cols=141  Identities=40%  Similarity=0.710  Sum_probs=124.2

Q ss_pred             CCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcC
Q 028986           57 QFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHG  136 (200)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~  136 (200)
                      .|.+.+.++.+.++....+.+. +..+++.+|||+|++.+..++..+++.+|++|+|||++++.+++.+..|+..+....
T Consensus         4 ~F~~~~~~Tig~~~~~~~~~~~-~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~   82 (176)
T PTZ00099          4 TFDNNYQSTIGIDFLSKTLYLD-EGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER   82 (176)
T ss_pred             CcCCCCCCccceEEEEEEEEEC-CEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence            4566778888888877777664 455899999999999999999999999999999999999999999999999887665


Q ss_pred             CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHhhccc
Q 028986          137 SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLITCTSSY  198 (200)
Q Consensus       137 ~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~~~~~  198 (200)
                      ...+|+++|+||+|+...+.+..+++..++..+++.++++||++|.|++++|++|.+.+.+.
T Consensus        83 ~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~  144 (176)
T PTZ00099         83 GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNL  144 (176)
T ss_pred             CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            56789999999999977667788888889888899999999999999999999999988653

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.94  E-value=7.3e-26  Score=156.89  Aligned_cols=151  Identities=26%  Similarity=0.400  Sum_probs=118.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEEEe
Q 028986           36 LVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYD  115 (200)
Q Consensus        36 i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d  115 (200)
                      |+++|++|||||||+++|.+..+...+.++.+.....  +..  +. +.+.+||+||++.+...+..++..+|++++|+|
T Consensus         2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~--~~-~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d   76 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VTK--GN-VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVD   76 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE--EEE--CC-EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEE
Confidence            8999999999999999999998887777777665532  222  22 789999999999999999999999999999999


Q ss_pred             CCCHHhHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCcCCHHHHHHHH-----HHcCCeEEEecCCCCCCHHHHHH
Q 028986          116 ITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYA-----EKNGMFFIETSAKTADNINQLFE  189 (200)
Q Consensus       116 ~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~i~~~~~  189 (200)
                      +++..++.....|+..+... ...++|+++|+||.|+.....  ..+.....     ....++++++|++++.|++++++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  154 (159)
T cd04159          77 AADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALS--VDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLD  154 (159)
T ss_pred             CCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcC--HHHHHHHhCcccccCCceEEEEEEeccCCChHHHHH
Confidence            99998888877777665442 235789999999999865432  22222221     12345789999999999999999


Q ss_pred             HHHH
Q 028986          190 VLIT  193 (200)
Q Consensus       190 ~i~~  193 (200)
                      +|.+
T Consensus       155 ~l~~  158 (159)
T cd04159         155 WLIK  158 (159)
T ss_pred             HHhh
Confidence            9875

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.94  E-value=2.8e-25  Score=170.20  Aligned_cols=163  Identities=18%  Similarity=0.114  Sum_probs=116.9

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhh-------hhhcccccccC
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQER-------YAALAPLYYRG  106 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-------~~~~~~~~~~~  106 (200)
                      ..|+|+|.|+||||||+++|.+........+..+.......+.+.++  .++.+||+||.-+       ....+...++.
T Consensus       159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~--~~~~i~D~PGli~ga~~~~gLg~~flrhie~  236 (335)
T PRK12299        159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDY--KSFVIADIPGLIEGASEGAGLGHRFLKHIER  236 (335)
T ss_pred             CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCC--cEEEEEeCCCccCCCCccccHHHHHHHHhhh
Confidence            36889999999999999999986432211122222222222333222  4689999999532       11222334567


Q ss_pred             ccEEEEEEeCCCHHhHHHHHHHHHHHHHcCC--CCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCH
Q 028986          107 AAVAVVVYDITSPDSFNKAQYWVKELQKHGS--PDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNI  184 (200)
Q Consensus       107 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i  184 (200)
                      ++++++|+|+++.++++.+..|...+.....  .+.|+++|+||+|+........++...++...+.+++++||+++.|+
T Consensus       237 a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI  316 (335)
T PRK12299        237 TRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGL  316 (335)
T ss_pred             cCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCH
Confidence            9999999999987788888999988876543  46899999999998765444344445555566788999999999999


Q ss_pred             HHHHHHHHHhhccc
Q 028986          185 NQLFEVLITCTSSY  198 (200)
Q Consensus       185 ~~~~~~i~~~~~~~  198 (200)
                      ++++++|.+.+.+.
T Consensus       317 ~eL~~~L~~~l~~~  330 (335)
T PRK12299        317 DELLRALWELLEEA  330 (335)
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999988653

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.94  E-value=1.9e-25  Score=156.65  Aligned_cols=155  Identities=17%  Similarity=0.183  Sum_probs=106.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhh---------ccccccc
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAA---------LAPLYYR  105 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~---------~~~~~~~  105 (200)
                      +|+++|++|+|||||+++|.+..+.....+.............   ..+.+++|||||......         .......
T Consensus         2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~   78 (168)
T cd01897           2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDY---KYLRWQVIDTPGLLDRPLEERNTIEMQAITALAH   78 (168)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEcc---CceEEEEEECCCcCCccccCCchHHHHHHHHHHh
Confidence            7999999999999999999997654221111111111112211   236899999999732110         0001112


Q ss_pred             CccEEEEEEeCCCHHh--HHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCC
Q 028986          106 GAAVAVVVYDITSPDS--FNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADN  183 (200)
Q Consensus       106 ~~d~~i~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~  183 (200)
                      .+|++++|+|+++..+  ++....|+..+... ..+.|+++|+||+|+.......  +..++....+.+++++||+++.|
T Consensus        79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~--~~~~~~~~~~~~~~~~Sa~~~~g  155 (168)
T cd01897          79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPL-FKNKPVIVVLNKIDLLTFEDLS--EIEEEEELEGEEVLKISTLTEEG  155 (168)
T ss_pred             ccCcEEEEEeCCcccccchHHHHHHHHHHHhh-cCcCCeEEEEEccccCchhhHH--HHHHhhhhccCceEEEEecccCC
Confidence            3689999999998754  35556777777654 2478999999999986544322  24455555677899999999999


Q ss_pred             HHHHHHHHHHhh
Q 028986          184 INQLFEVLITCT  195 (200)
Q Consensus       184 i~~~~~~i~~~~  195 (200)
                      +++++++|.+.+
T Consensus       156 i~~l~~~l~~~~  167 (168)
T cd01897         156 VDEVKNKACELL  167 (168)
T ss_pred             HHHHHHHHHHHh
Confidence            999999999875

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd04155 Arl3 Arl3 subfamily

Probab=99.94  E-value=1e-24  Score=153.74  Aligned_cols=156  Identities=19%  Similarity=0.266  Sum_probs=114.8

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA  110 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  110 (200)
                      ...++|+|+|++|||||||++++.+..+.. ..++.+...  ..+...   ...+.+||++|+..+...+..+++.+|++
T Consensus        12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~-~~~t~g~~~--~~i~~~---~~~~~~~D~~G~~~~~~~~~~~~~~~~~i   85 (173)
T cd04155          12 SEEPRILILGLDNAGKTTILKQLASEDISH-ITPTQGFNI--KTVQSD---GFKLNVWDIGGQRAIRPYWRNYFENTDCL   85 (173)
T ss_pred             CCccEEEEEccCCCCHHHHHHHHhcCCCcc-cCCCCCcce--EEEEEC---CEEEEEEECCCCHHHHHHHHHHhcCCCEE
Confidence            447899999999999999999999976532 334444332  223332   26799999999988888888889999999


Q ss_pred             EEEEeCCCHHhHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHc-----CCeEEEecCCCCCCH
Q 028986          111 VVVYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAEKN-----GMFFIETSAKTADNI  184 (200)
Q Consensus       111 i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~~~S~~~~~~i  184 (200)
                      ++|+|+++..++.....++..+... ...++|+++++||+|+.....  .+++.+.....     ..+++++||++|.|+
T Consensus        86 i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi  163 (173)
T cd04155          86 IYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAP--AEEIAEALNLHDLRDRTWHIQACSAKTGEGL  163 (173)
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCC--HHHHHHHcCCcccCCCeEEEEEeECCCCCCH
Confidence            9999999988888776666655432 245799999999999865322  22222221111     124789999999999


Q ss_pred             HHHHHHHHHh
Q 028986          185 NQLFEVLITC  194 (200)
Q Consensus       185 ~~~~~~i~~~  194 (200)
                      +++|+||+++
T Consensus       164 ~~~~~~l~~~  173 (173)
T cd04155         164 QEGMNWVCKN  173 (173)
T ss_pred             HHHHHHHhcC
Confidence            9999999763

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd01878 HflX HflX subfamily

Probab=99.94  E-value=3.2e-25  Score=160.37  Aligned_cols=158  Identities=23%  Similarity=0.239  Sum_probs=112.9

Q ss_pred             CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhh---------hhhcc
Q 028986           30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQER---------YAALA  100 (200)
Q Consensus        30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~---------~~~~~  100 (200)
                      .+..++|+|+|++|||||||++++++........+..+.......+.+.+.  ..+.+|||||...         +...+
T Consensus        38 ~~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~  115 (204)
T cd01878          38 RSGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG--REVLLTDTVGFIRDLPHQLVEAFRSTL  115 (204)
T ss_pred             hcCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC--ceEEEeCCCccccCCCHHHHHHHHHHH
Confidence            345679999999999999999999997643222222222222233333332  3789999999621         22222


Q ss_pred             cccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCC
Q 028986          101 PLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKT  180 (200)
Q Consensus       101 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~  180 (200)
                       ..+..+|++++|+|++++.++.....|...+......++|+++|+||+|+......     .......+.+++++|+++
T Consensus       116 -~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~-----~~~~~~~~~~~~~~Sa~~  189 (204)
T cd01878         116 -EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEEL-----EERLEAGRPDAVFISAKT  189 (204)
T ss_pred             -HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHH-----HHHhhcCCCceEEEEcCC
Confidence             23567999999999999888877777777777665567899999999998654321     133445567899999999


Q ss_pred             CCCHHHHHHHHHHhh
Q 028986          181 ADNINQLFEVLITCT  195 (200)
Q Consensus       181 ~~~i~~~~~~i~~~~  195 (200)
                      +.|+++++++|.+.+
T Consensus       190 ~~gi~~l~~~L~~~~  204 (204)
T cd01878         190 GEGLDELLEAIEELL  204 (204)
T ss_pred             CCCHHHHHHHHHhhC
Confidence            999999999998754

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>cd01898 Obg Obg subfamily

Probab=99.94  E-value=2.9e-25  Score=155.96  Aligned_cols=158  Identities=18%  Similarity=0.144  Sum_probs=109.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhh----hhhccccc---ccCc
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQER----YAALAPLY---YRGA  107 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----~~~~~~~~---~~~~  107 (200)
                      +|+++|.+|||||||+++|.+........+..........+.+.+  ...+.+|||||..+    .......+   +..+
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~   79 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDD--GRSFVVADIPGLIEGASEGKGLGHRFLRHIERT   79 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCC--CCeEEEEecCcccCcccccCCchHHHHHHHHhC
Confidence            689999999999999999997643211111111111111122222  14799999999632    11122222   3469


Q ss_pred             cEEEEEEeCCCH-HhHHHHHHHHHHHHHcCC--CCCeEEEEEeCCCCCCCCcCCHHHHHHHHHH-cCCeEEEecCCCCCC
Q 028986          108 AVAVVVYDITSP-DSFNKAQYWVKELQKHGS--PDIVMALVGNKADLHEKREVPAQDGIEYAEK-NGMFFIETSAKTADN  183 (200)
Q Consensus       108 d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~S~~~~~~  183 (200)
                      |++++|+|++++ .+++.+..|.+.+.....  ...|+++|+||+|+...... .+....+... .+.+++++|++++.|
T Consensus        80 d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~g  158 (170)
T cd01898          80 RLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEEL-FELLKELLKELWGKPVFPISALTGEG  158 (170)
T ss_pred             CEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhh-HHHHHHHHhhCCCCCEEEEecCCCCC
Confidence            999999999998 788888888888876532  46899999999998665443 3344455555 377899999999999


Q ss_pred             HHHHHHHHHHhh
Q 028986          184 INQLFEVLITCT  195 (200)
Q Consensus       184 i~~~~~~i~~~~  195 (200)
                      ++++|++|.+.+
T Consensus       159 i~~l~~~i~~~~  170 (170)
T cd01898         159 LDELLRKLAELL  170 (170)
T ss_pred             HHHHHHHHHhhC
Confidence            999999998764

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>cd01890 LepA LepA subfamily

Probab=99.94  E-value=6.6e-25  Score=155.50  Aligned_cols=156  Identities=19%  Similarity=0.212  Sum_probs=111.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCC-------CCCCCcc------ccceeEEEEEE--Eec--CCcEEEEEEEeCCChhhhh
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQ-------FDPTSKV------TVGASFLSQTI--ALQ--DSTTVKFEIWDTAGQERYA   97 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~-------~~~~~~~------~~~~~~~~~~~--~~~--~~~~~~~~l~D~~g~~~~~   97 (200)
                      +|+++|++++|||||+++|++..       +...+..      +.+.++....+  .+.  ++..+.+.+|||||++++.
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   81 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS   81 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence            69999999999999999998742       1111111      11222222221  121  3445889999999999999


Q ss_pred             hcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCC---eEE
Q 028986           98 ALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGM---FFI  174 (200)
Q Consensus        98 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~---~~~  174 (200)
                      ..+..+++.+|++|+|+|+++..+......|....    ..++|+++|+||+|+....  ..+...++++.+++   .++
T Consensus        82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~----~~~~~iiiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~  155 (179)
T cd01890          82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL----ENNLEIIPVINKIDLPSAD--PERVKQQIEDVLGLDPSEAI  155 (179)
T ss_pred             HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH----HcCCCEEEEEECCCCCcCC--HHHHHHHHHHHhCCCcccEE
Confidence            88889999999999999999876665555554322    2367899999999985422  12333455555665   389


Q ss_pred             EecCCCCCCHHHHHHHHHHhhc
Q 028986          175 ETSAKTADNINQLFEVLITCTS  196 (200)
Q Consensus       175 ~~S~~~~~~i~~~~~~i~~~~~  196 (200)
                      ++||++|.|++++|++|.+.+.
T Consensus       156 ~~Sa~~g~gi~~l~~~l~~~~~  177 (179)
T cd01890         156 LVSAKTGLGVEDLLEAIVERIP  177 (179)
T ss_pred             EeeccCCCCHHHHHHHHHhhCC
Confidence            9999999999999999998764

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd04171 SelB SelB subfamily

Probab=99.93  E-value=2.2e-24  Score=150.48  Aligned_cols=152  Identities=16%  Similarity=0.125  Sum_probs=102.9

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcCC---CCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRGQ---FDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA  110 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  110 (200)
                      +.|+++|+++||||||+++|.+..   +.....+............+..  ...+.+|||||++++......++..+|++
T Consensus         1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~~DtpG~~~~~~~~~~~~~~ad~i   78 (164)
T cd04171           1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS--GKRLGFIDVPGHEKFIKNMLAGAGGIDLV   78 (164)
T ss_pred             CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC--CcEEEEEECCChHHHHHHHHhhhhcCCEE
Confidence            368999999999999999999742   2222222222233233333332  25799999999998877767778899999


Q ss_pred             EEEEeCCC---HHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCc--CCHHHHHHHHHH---cCCeEEEecCCCCC
Q 028986          111 VVVYDITS---PDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKRE--VPAQDGIEYAEK---NGMFFIETSAKTAD  182 (200)
Q Consensus       111 i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~--~~~~~~~~~~~~---~~~~~~~~S~~~~~  182 (200)
                      ++|+|+++   ..+.+.+    ..+...  ...|+++|+||+|+.....  ...++..+.+..   .+.+++++|++++.
T Consensus        79 i~V~d~~~~~~~~~~~~~----~~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  152 (164)
T cd04171          79 LLVVAADEGIMPQTREHL----EILELL--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGE  152 (164)
T ss_pred             EEEEECCCCccHhHHHHH----HHHHHh--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCc
Confidence            99999987   3333322    222222  1248999999999865321  112333444443   36789999999999


Q ss_pred             CHHHHHHHHHH
Q 028986          183 NINQLFEVLIT  193 (200)
Q Consensus       183 ~i~~~~~~i~~  193 (200)
                      |++++++.|.+
T Consensus       153 ~v~~l~~~l~~  163 (164)
T cd04171         153 GIEELKEYLDE  163 (164)
T ss_pred             CHHHHHHHHhh
Confidence            99999998764

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.93  E-value=4.5e-24  Score=147.59  Aligned_cols=158  Identities=32%  Similarity=0.518  Sum_probs=121.7

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEE
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVV  112 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~  112 (200)
                      .+||+++|++|+|||||++++....+...+.++.+.++....+.. ++..+.+.+||+||+..+...+..+.++++.+++
T Consensus         1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   79 (161)
T TIGR00231         1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEE-DGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLR   79 (161)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEE-CCEEEEEEEEECCCcccchHHHHHHHhhhhEEEE
Confidence            368999999999999999999998866666666666665555555 3444789999999998888888888889999999


Q ss_pred             EEeCCCH-HhHHHHH-HHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Q 028986          113 VYDITSP-DSFNKAQ-YWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEV  190 (200)
Q Consensus       113 v~d~~~~-~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~  190 (200)
                      ++|.... .++.... .|+..+......+.|+++++||.|+.... ........+......+++++|++++.|+.+++++
T Consensus        80 ~~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~  158 (161)
T TIGR00231        80 VFDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKI  158 (161)
T ss_pred             EEEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHH
Confidence            9998876 5665543 66666665544488999999999996543 2333333333444667999999999999999998


Q ss_pred             HH
Q 028986          191 LI  192 (200)
Q Consensus       191 i~  192 (200)
                      |-
T Consensus       159 l~  160 (161)
T TIGR00231       159 VE  160 (161)
T ss_pred             hh
Confidence            63

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.93  E-value=3.3e-24  Score=150.31  Aligned_cols=159  Identities=14%  Similarity=0.143  Sum_probs=108.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEEE
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVY  114 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~  114 (200)
                      .|+|+|++|+|||||+++|....+..........+.....+....+....+.+|||||++.+...+..++..+|++++|+
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~   81 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV   81 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence            48999999999999999999987655433333333333333332123368999999999988888888889999999999


Q ss_pred             eCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCC-HHHHHHHHH------HcCCeEEEecCCCCCCHHHH
Q 028986          115 DITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVP-AQDGIEYAE------KNGMFFIETSAKTADNINQL  187 (200)
Q Consensus       115 d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~-~~~~~~~~~------~~~~~~~~~S~~~~~~i~~~  187 (200)
                      |+++....+. ...+..+..   .++|+++|+||+|+....... .+....+..      ...++++++|++++.|+.++
T Consensus        82 d~~~~~~~~~-~~~~~~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  157 (168)
T cd01887          82 AADDGVMPQT-IEAIKLAKA---ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDL  157 (168)
T ss_pred             ECCCCccHHH-HHHHHHHHH---cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHH
Confidence            9997532211 112222332   467899999999986432111 111111111      12357999999999999999


Q ss_pred             HHHHHHhhcc
Q 028986          188 FEVLITCTSS  197 (200)
Q Consensus       188 ~~~i~~~~~~  197 (200)
                      +++|.+...+
T Consensus       158 ~~~l~~~~~~  167 (168)
T cd01887         158 LEAILLLAEK  167 (168)
T ss_pred             HHHHHHhhhc
Confidence            9999987654

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.92  E-value=1.8e-23  Score=152.69  Aligned_cols=164  Identities=38%  Similarity=0.555  Sum_probs=133.8

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEE
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVV  112 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~  112 (200)
                      .+||+|+|+.|||||||+++|....+...+.++.+..+.......... .+++.+|||+|++++...+..++..++++++
T Consensus         5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~   83 (219)
T COG1100           5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRR-NIKLQLWDTAGQEEYRSLRPEYYRGANGILI   83 (219)
T ss_pred             eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCC-EEEEEeecCCCHHHHHHHHHHHhcCCCEEEE
Confidence            389999999999999999999999998888888777776665555433 5889999999999999999999999999999


Q ss_pred             EEeCCC-HHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCC------------cCCHHHHHHHHHHc---CCeEEEe
Q 028986          113 VYDITS-PDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKR------------EVPAQDGIEYAEKN---GMFFIET  176 (200)
Q Consensus       113 v~d~~~-~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~------------~~~~~~~~~~~~~~---~~~~~~~  176 (200)
                      ++|... ..+.+....|+..+........|+++|+||+|+....            ..............   ...++++
T Consensus        84 ~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (219)
T COG1100          84 VYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLET  163 (219)
T ss_pred             EEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEe
Confidence            999999 5556777999999988766679999999999997653            22233323332222   3348999


Q ss_pred             cCC--CCCCHHHHHHHHHHhhcc
Q 028986          177 SAK--TADNINQLFEVLITCTSS  197 (200)
Q Consensus       177 S~~--~~~~i~~~~~~i~~~~~~  197 (200)
                      |++  .+.++.++|..+...+.+
T Consensus       164 s~~~~~~~~v~~~~~~~~~~~~~  186 (219)
T COG1100         164 SAKSLTGPNVNELFKELLRKLLE  186 (219)
T ss_pred             ecccCCCcCHHHHHHHHHHHHHH
Confidence            999  999999999999888753

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.92  E-value=1.2e-24  Score=148.54  Aligned_cols=134  Identities=23%  Similarity=0.264  Sum_probs=97.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChh----h-hhhcccccccCccE
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE----R-YAALAPLYYRGAAV  109 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~----~-~~~~~~~~~~~~d~  109 (200)
                      ||+++|++|+|||||+++|.+..+.  +.++.+..       +      .-.+|||||..    . +.... ..++++|+
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~~-------~------~~~~iDt~G~~~~~~~~~~~~~-~~~~~ad~   65 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAVE-------Y------NDGAIDTPGEYVENRRLYSALI-VTAADADV   65 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCccc--cccceeEE-------E------cCeeecCchhhhhhHHHHHHHH-HHhhcCCE
Confidence            7999999999999999999987542  22222111       1      12689999973    2 33332 34789999


Q ss_pred             EEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCC-eEEEecCCCCCCHHHHH
Q 028986          110 AVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGM-FFIETSAKTADNINQLF  188 (200)
Q Consensus       110 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~i~~~~  188 (200)
                      +++|||++++.++.. ..|...+      ..|+++|+||+|+.+. ....++..++++..+. +++++||+++.|++++|
T Consensus        66 vilv~d~~~~~s~~~-~~~~~~~------~~p~ilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  137 (142)
T TIGR02528        66 IALVQSATDPESRFP-PGFASIF------VKPVIGLVTKIDLAEA-DVDIERAKELLETAGAEPIFEISSVDEQGLEALV  137 (142)
T ss_pred             EEEEecCCCCCcCCC-hhHHHhc------cCCeEEEEEeeccCCc-ccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHH
Confidence            999999999887644 2343322      2389999999998643 3455666777777776 79999999999999999


Q ss_pred             HHHH
Q 028986          189 EVLI  192 (200)
Q Consensus       189 ~~i~  192 (200)
                      ++|.
T Consensus       138 ~~l~  141 (142)
T TIGR02528       138 DYLN  141 (142)
T ss_pred             HHHh
Confidence            9874

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=1.8e-24  Score=147.58  Aligned_cols=162  Identities=17%  Similarity=0.280  Sum_probs=131.2

Q ss_pred             CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCcc
Q 028986           29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAA  108 (200)
Q Consensus        29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d  108 (200)
                      ..+++.+|+++|--++||||++++|..++.... .||.+.....  +.+.+   +++++||..|++.++.+|.+|+++.+
T Consensus        13 ~~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~--v~ykn---~~f~vWDvGGq~k~R~lW~~Y~~~t~   86 (181)
T KOG0070|consen   13 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVET--VEYKN---ISFTVWDVGGQEKLRPLWKHYFQNTQ   86 (181)
T ss_pred             cCcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeE--EEEcc---eEEEEEecCCCcccccchhhhccCCc
Confidence            457788999999999999999999998876554 5566655544  44443   89999999999999999999999999


Q ss_pred             EEEEEEeCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHH-----cCCeEEEecCCCCC
Q 028986          109 VAVVVYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAEK-----NGMFFIETSAKTAD  182 (200)
Q Consensus       109 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~S~~~~~  182 (200)
                      ++|||+|.++++-+...+..+..+.... ..+.|+++.+||.|+.....  ..++.+....     ....+-.|+|..|+
T Consensus        87 ~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als--~~ei~~~L~l~~l~~~~w~iq~~~a~~G~  164 (181)
T KOG0070|consen   87 GLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALS--AAEITNKLGLHSLRSRNWHIQSTCAISGE  164 (181)
T ss_pred             EEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCC--HHHHHhHhhhhccCCCCcEEeeccccccc
Confidence            9999999999999988887777776654 36899999999999876533  3333333322     34568889999999


Q ss_pred             CHHHHHHHHHHhhccc
Q 028986          183 NINQLFEVLITCTSSY  198 (200)
Q Consensus       183 ~i~~~~~~i~~~~~~~  198 (200)
                      |+.+.++||.+.+..+
T Consensus       165 GL~egl~wl~~~~~~~  180 (181)
T KOG0070|consen  165 GLYEGLDWLSNNLKKR  180 (181)
T ss_pred             cHHHHHHHHHHHHhcc
Confidence            9999999999998765

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.92  E-value=1.7e-23  Score=160.26  Aligned_cols=159  Identities=21%  Similarity=0.140  Sum_probs=111.2

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhh----hc---ccccccC
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYA----AL---APLYYRG  106 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~----~~---~~~~~~~  106 (200)
                      ..|+|+|.++||||||+++|.+........+..+.......+.+.+  ..++.+||+||..+..    .+   +...+..
T Consensus       158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~--~~~~~i~D~PGli~~a~~~~gLg~~flrhier  235 (329)
T TIGR02729       158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD--GRSFVIADIPGLIEGASEGAGLGHRFLKHIER  235 (329)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC--ceEEEEEeCCCcccCCcccccHHHHHHHHHHh
Confidence            4788999999999999999998643221111112222222233322  2578999999963211    12   2223456


Q ss_pred             ccEEEEEEeCCCH---HhHHHHHHHHHHHHHcC--CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCC
Q 028986          107 AAVAVVVYDITSP---DSFNKAQYWVKELQKHG--SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTA  181 (200)
Q Consensus       107 ~d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~  181 (200)
                      ++++++|+|+++.   ++++.+..|.+.+....  ....|+++|+||+|+..... ..+..+.+++..+.+++++||+++
T Consensus       236 ad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~vi~iSAktg  314 (329)
T TIGR02729       236 TRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLKELKKALGKPVFPISALTG  314 (329)
T ss_pred             hCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCcEEEEEccCC
Confidence            9999999999976   67778888887776543  24689999999999865532 234445566666788999999999


Q ss_pred             CCHHHHHHHHHHhh
Q 028986          182 DNINQLFEVLITCT  195 (200)
Q Consensus       182 ~~i~~~~~~i~~~~  195 (200)
                      .|+++++++|.+.+
T Consensus       315 ~GI~eL~~~I~~~l  328 (329)
T TIGR02729       315 EGLDELLYALAELL  328 (329)
T ss_pred             cCHHHHHHHHHHHh
Confidence            99999999998865

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.92  E-value=1.7e-23  Score=161.64  Aligned_cols=155  Identities=23%  Similarity=0.213  Sum_probs=111.1

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCCh---------hhhhhccc
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ---------ERYAALAP  101 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~---------~~~~~~~~  101 (200)
                      ...++|+++|.+|+|||||+|+|++........+..+.+.....+.+.++  ..+.+|||+|.         +.+...+ 
T Consensus       187 ~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~--~~i~l~DT~G~~~~l~~~lie~f~~tl-  263 (351)
T TIGR03156       187 ADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG--GEVLLTDTVGFIRDLPHELVAAFRATL-  263 (351)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC--ceEEEEecCcccccCCHHHHHHHHHHH-
Confidence            34589999999999999999999997643222222233344455555444  37899999996         2222222 


Q ss_pred             ccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCC
Q 028986          102 LYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTA  181 (200)
Q Consensus       102 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~  181 (200)
                      ..+.++|++++|+|++++.+.+.+..|...+......+.|+++|+||+|+.....     .... .....+++++||+++
T Consensus       264 e~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~-----v~~~-~~~~~~~i~iSAktg  337 (351)
T TIGR03156       264 EEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPR-----IERL-EEGYPEAVFVSAKTG  337 (351)
T ss_pred             HHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHh-----HHHH-HhCCCCEEEEEccCC
Confidence            2477899999999999988877777777666665555789999999999864321     1111 122346899999999


Q ss_pred             CCHHHHHHHHHHh
Q 028986          182 DNINQLFEVLITC  194 (200)
Q Consensus       182 ~~i~~~~~~i~~~  194 (200)
                      .|+++++++|.+.
T Consensus       338 ~GI~eL~~~I~~~  350 (351)
T TIGR03156       338 EGLDLLLEAIAER  350 (351)
T ss_pred             CCHHHHHHHHHhh
Confidence            9999999998765

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>PRK04213 GTP-binding protein; Provisional

Probab=99.92  E-value=2.5e-24  Score=155.30  Aligned_cols=155  Identities=23%  Similarity=0.201  Sum_probs=104.8

Q ss_pred             CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCC-----------hhhhhh
Q 028986           30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAG-----------QERYAA   98 (200)
Q Consensus        30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g-----------~~~~~~   98 (200)
                      ....++|+++|++|+|||||+++|.+..+.....+  +.+.....+...     .+.+|||||           ++.+..
T Consensus         6 ~~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~--~~t~~~~~~~~~-----~~~l~Dt~G~~~~~~~~~~~~~~~~~   78 (201)
T PRK04213          6 PDRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRP--GVTRKPNHYDWG-----DFILTDLPGFGFMSGVPKEVQEKIKD   78 (201)
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCC--ceeeCceEEeec-----ceEEEeCCccccccccCHHHHHHHHH
Confidence            34567999999999999999999998775433333  333322322221     589999999           455665


Q ss_pred             ccccccc----CccEEEEEEeCCCHHhH-H---------HHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHH
Q 028986           99 LAPLYYR----GAAVAVVVYDITSPDSF-N---------KAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIE  164 (200)
Q Consensus        99 ~~~~~~~----~~d~~i~v~d~~~~~s~-~---------~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~  164 (200)
                      .+..++.    .++++++|+|.++...+ +         ....++..+.   ..++|+++|+||+|+....   .+...+
T Consensus        79 ~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~p~iiv~NK~Dl~~~~---~~~~~~  152 (201)
T PRK04213         79 EIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR---ELGIPPIVAVNKMDKIKNR---DEVLDE  152 (201)
T ss_pred             HHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHH---HcCCCeEEEEECccccCcH---HHHHHH
Confidence            5555543    46788999998653211 0         0011222222   2478999999999986443   334455


Q ss_pred             HHHHcCC---------eEEEecCCCCCCHHHHHHHHHHhhccc
Q 028986          165 YAEKNGM---------FFIETSAKTADNINQLFEVLITCTSSY  198 (200)
Q Consensus       165 ~~~~~~~---------~~~~~S~~~~~~i~~~~~~i~~~~~~~  198 (200)
                      +++.+++         +++++||++| |+++++++|.+.+.+.
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~  194 (201)
T PRK04213        153 IAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEA  194 (201)
T ss_pred             HHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCc
Confidence            5555554         4799999999 9999999999988764

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.91  E-value=3.8e-23  Score=141.78  Aligned_cols=153  Identities=42%  Similarity=0.737  Sum_probs=117.1

Q ss_pred             EEcCCCCcHHHHHHHHHcCCC-CCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEEEeC
Q 028986           38 LLGDSGVGKSCIVLRFVRGQF-DPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDI  116 (200)
Q Consensus        38 i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~  116 (200)
                      |+|++|+|||||++++.+... .....++. ........... .....+.+||+||...+...+..+++.+|++++|+|+
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~   78 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVD-GKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDV   78 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEEC-CEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEEC
Confidence            589999999999999999776 33344444 44444444432 3347899999999988888778889999999999999


Q ss_pred             CCHHhHHHHHHHH-HHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHH-HHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Q 028986          117 TSPDSFNKAQYWV-KELQKHGSPDIVMALVGNKADLHEKREVPAQD-GIEYAEKNGMFFIETSAKTADNINQLFEVLI  192 (200)
Q Consensus       117 ~~~~s~~~~~~~~-~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~-~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~  192 (200)
                      +++.++.....|. .........+.|+++|+||+|+.......... ..........+++++|++.+.++.+++++|.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  156 (157)
T cd00882          79 TDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA  156 (157)
T ss_pred             cCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence            9998888887762 33333446789999999999987654433322 3444555678999999999999999999986

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>TIGR00436 era GTP-binding protein Era

Probab=99.91  E-value=1.8e-23  Score=157.10  Aligned_cols=155  Identities=20%  Similarity=0.127  Sum_probs=105.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhh--------hhcccccccC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERY--------AALAPLYYRG  106 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~--------~~~~~~~~~~  106 (200)
                      +|+++|.+|||||||+|+|++......+.....+......+...++  .++.+|||||....        ......++..
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~--~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~   79 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGA--SQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG   79 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCC--cEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence            5899999999999999999998654332221111111222222222  46899999996421        1223456788


Q ss_pred             ccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCC-eEEEecCCCCCCHH
Q 028986          107 AAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGM-FFIETSAKTADNIN  185 (200)
Q Consensus       107 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~i~  185 (200)
                      +|++++|+|+++..+.+  ..++..+..   .+.|+++|+||+|+..... ..+....++...+. +++++||++|.|++
T Consensus        80 aDvvl~VvD~~~~~~~~--~~i~~~l~~---~~~p~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~v~~iSA~~g~gi~  153 (270)
T TIGR00436        80 VDLILFVVDSDQWNGDG--EFVLTKLQN---LKRPVVLTRNKLDNKFKDK-LLPLIDKYAILEDFKDIVPISALTGDNTS  153 (270)
T ss_pred             CCEEEEEEECCCCCchH--HHHHHHHHh---cCCCEEEEEECeeCCCHHH-HHHHHHHHHhhcCCCceEEEecCCCCCHH
Confidence            99999999999875554  344444443   3688999999999864322 12333444444444 79999999999999


Q ss_pred             HHHHHHHHhhcc
Q 028986          186 QLFEVLITCTSS  197 (200)
Q Consensus       186 ~~~~~i~~~~~~  197 (200)
                      +++++|.+.+.+
T Consensus       154 ~L~~~l~~~l~~  165 (270)
T TIGR00436       154 FLAAFIEVHLPE  165 (270)
T ss_pred             HHHHHHHHhCCC
Confidence            999999998765

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.91  E-value=2.7e-23  Score=144.20  Aligned_cols=149  Identities=21%  Similarity=0.224  Sum_probs=106.7

Q ss_pred             EEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhh------cccccc--cCccE
Q 028986           38 LLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAA------LAPLYY--RGAAV  109 (200)
Q Consensus        38 i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~------~~~~~~--~~~d~  109 (200)
                      ++|.+|+|||||++++.+........+..+.+.....+.+..   ..+.+|||||+..+..      .+..++  +.+|+
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~   77 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG---KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDL   77 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC---eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcE
Confidence            589999999999999999764433333333333334444432   4789999999865443      234444  48999


Q ss_pred             EEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Q 028986          110 AVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFE  189 (200)
Q Consensus       110 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~  189 (200)
                      +++|+|++++....   .++..+..   .++|+++|+||+|+.....+.. ....+...++.+++++|++++.|++++++
T Consensus        78 vi~v~d~~~~~~~~---~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~iSa~~~~~~~~l~~  150 (158)
T cd01879          78 IVNVVDATNLERNL---YLTLQLLE---LGLPVVVALNMIDEAEKRGIKI-DLDKLSELLGVPVVPTSARKGEGIDELKD  150 (158)
T ss_pred             EEEEeeCCcchhHH---HHHHHHHH---cCCCEEEEEehhhhcccccchh-hHHHHHHhhCCCeEEEEccCCCCHHHHHH
Confidence            99999999864332   33333433   3689999999999976544433 34566677788999999999999999999


Q ss_pred             HHHHhhc
Q 028986          190 VLITCTS  196 (200)
Q Consensus       190 ~i~~~~~  196 (200)
                      +|.+.++
T Consensus       151 ~l~~~~~  157 (158)
T cd01879         151 AIAELAE  157 (158)
T ss_pred             HHHHHhc
Confidence            9988754

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=99.91  E-value=7.1e-25  Score=143.45  Aligned_cols=162  Identities=27%  Similarity=0.368  Sum_probs=129.8

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA  110 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  110 (200)
                      +.++.+.++|-.+||||||+|....+.+.....++.+......+    .|. +.+.+||.+|++.+...|+.|++.++++
T Consensus        18 k~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk~t----kgn-vtiklwD~gGq~rfrsmWerycR~v~ai   92 (186)
T KOG0075|consen   18 KEEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRKVT----KGN-VTIKLWDLGGQPRFRSMWERYCRGVSAI   92 (186)
T ss_pred             HheeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEEec----cCc-eEEEEEecCCCccHHHHHHHHhhcCcEE
Confidence            34678999999999999999999998888888888887664432    333 8999999999999999999999999999


Q ss_pred             EEEEeCCCHHhHHHHHHHHHHHHH-cCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHH-----HHcCCeEEEecCCCCCCH
Q 028986          111 VVVYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHEKREVPAQDGIEYA-----EKNGMFFIETSAKTADNI  184 (200)
Q Consensus       111 i~v~d~~~~~s~~~~~~~~~~i~~-~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~i  184 (200)
                      +||+|+.+++.++..+..+..+.. ....++|+++++||.|+....  ....+....     ....+..|.+|+++..|+
T Consensus        93 vY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL--~~~~li~rmgL~sitdREvcC~siScke~~Ni  170 (186)
T KOG0075|consen   93 VYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGAL--SKIALIERMGLSSITDREVCCFSISCKEKVNI  170 (186)
T ss_pred             EEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccc--cHHHHHHHhCccccccceEEEEEEEEcCCccH
Confidence            999999999988888776666543 446789999999999986643  222222221     122345899999999999


Q ss_pred             HHHHHHHHHhhcccC
Q 028986          185 NQLFEVLITCTSSYC  199 (200)
Q Consensus       185 ~~~~~~i~~~~~~~~  199 (200)
                      +.+.+||+++-...+
T Consensus       171 d~~~~Wli~hsk~~~  185 (186)
T KOG0075|consen  171 DITLDWLIEHSKSLR  185 (186)
T ss_pred             HHHHHHHHHHhhhhc
Confidence            999999999876543

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.91  E-value=1.6e-23  Score=150.25  Aligned_cols=159  Identities=16%  Similarity=0.204  Sum_probs=105.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHc--CCCCCCC------------ccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcc
Q 028986           35 KLVLLGDSGVGKSCIVLRFVR--GQFDPTS------------KVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALA  100 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~  100 (200)
                      +|+++|.+++|||||+++|++  ..+....            ..+.+.+.......+.. ..+.+.+|||||++++...+
T Consensus         4 ~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~   82 (194)
T cd01891           4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTY-KDTKINIVDTPGHADFGGEV   82 (194)
T ss_pred             EEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEE-CCEEEEEEECCCcHHHHHHH
Confidence            799999999999999999997  4433322            11223333333333322 23789999999999999999


Q ss_pred             cccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCc-CCHHHHHHHHH-------HcCCe
Q 028986          101 PLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKRE-VPAQDGIEYAE-------KNGMF  172 (200)
Q Consensus       101 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~-~~~~~~~~~~~-------~~~~~  172 (200)
                      ..+++.+|++++|+|+++.. ......++..+..   .++|+++|+||+|+..... ...+++.+++.       ..+++
T Consensus        83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (194)
T cd01891          83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFP  158 (194)
T ss_pred             HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccC
Confidence            99999999999999998742 2233334443332   3688999999999864322 11233344432       23678


Q ss_pred             EEEecCCCCCCHHHH------HHHHHHhhccc
Q 028986          173 FIETSAKTADNINQL------FEVLITCTSSY  198 (200)
Q Consensus       173 ~~~~S~~~~~~i~~~------~~~i~~~~~~~  198 (200)
                      ++++|+++|.|+.+.      +++|++++.++
T Consensus       159 iv~~Sa~~g~~~~~~~~~~~~~~~l~~~~~~~  190 (194)
T cd01891         159 VLYASAKNGWASLNLEDPSEDLEPLFDTIIEH  190 (194)
T ss_pred             EEEeehhccccccccccchhhHHHHHHHHHhc
Confidence            999999999876433      44555555443

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.91  E-value=1.2e-23  Score=143.44  Aligned_cols=148  Identities=23%  Similarity=0.311  Sum_probs=99.1

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhh------hhccccc--cc
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERY------AALAPLY--YR  105 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~------~~~~~~~--~~  105 (200)
                      ++|+++|.|+||||||+|+|++........+..+.+.....+.+.+   ..+.++|+||....      ......+  ..
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~---~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~   77 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD---QQVELVDLPGIYSLSSKSEEERVARDYLLSE   77 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT---EEEEEEE----SSSSSSSHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC---ceEEEEECCCcccCCCCCcHHHHHHHHHhhc
Confidence            5899999999999999999999864322223333333334444433   57999999993211      1222233  36


Q ss_pred             CccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHH
Q 028986          106 GAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNIN  185 (200)
Q Consensus       106 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~  185 (200)
                      ..|++++|+|+++.+   .-..+...+.+.   ++|+++++||+|....+.+.. ....+.+.++++++++||+++.|++
T Consensus        78 ~~D~ii~VvDa~~l~---r~l~l~~ql~e~---g~P~vvvlN~~D~a~~~g~~i-d~~~Ls~~Lg~pvi~~sa~~~~g~~  150 (156)
T PF02421_consen   78 KPDLIIVVVDATNLE---RNLYLTLQLLEL---GIPVVVVLNKMDEAERKGIEI-DAEKLSERLGVPVIPVSARTGEGID  150 (156)
T ss_dssp             SSSEEEEEEEGGGHH---HHHHHHHHHHHT---TSSEEEEEETHHHHHHTTEEE--HHHHHHHHTS-EEEEBTTTTBTHH
T ss_pred             CCCEEEEECCCCCHH---HHHHHHHHHHHc---CCCEEEEEeCHHHHHHcCCEE-CHHHHHHHhCCCEEEEEeCCCcCHH
Confidence            799999999998743   222333444444   789999999999865544333 3566777789999999999999999


Q ss_pred             HHHHHH
Q 028986          186 QLFEVL  191 (200)
Q Consensus       186 ~~~~~i  191 (200)
                      ++++.|
T Consensus       151 ~L~~~I  156 (156)
T PF02421_consen  151 ELKDAI  156 (156)
T ss_dssp             HHHHHH
T ss_pred             HHHhhC
Confidence            999875

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.90  E-value=5.5e-23  Score=145.11  Aligned_cols=155  Identities=21%  Similarity=0.199  Sum_probs=104.8

Q ss_pred             EEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhh----hcc---cccccCccEE
Q 028986           38 LLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYA----ALA---PLYYRGAAVA  110 (200)
Q Consensus        38 i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~----~~~---~~~~~~~d~~  110 (200)
                      |+|++|||||||+++|.+........+..........+.+.++  ..+.+||+||..+..    ..+   ...++.+|++
T Consensus         1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i   78 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDG--ARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAI   78 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCC--CeEEEEeccccchhhhcCCCccHHHHHHHhccCEE
Confidence            5899999999999999997641111111111111122223212  578999999963221    121   2346779999


Q ss_pred             EEEEeCCCH------HhHHHHHHHHHHHHHcCC-------CCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEec
Q 028986          111 VVVYDITSP------DSFNKAQYWVKELQKHGS-------PDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETS  177 (200)
Q Consensus       111 i~v~d~~~~------~s~~~~~~~~~~i~~~~~-------~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S  177 (200)
                      ++|+|+++.      .+++....|...+.....       .+.|+++|+||+|+..................+..++++|
T Consensus        79 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S  158 (176)
T cd01881          79 LHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPIS  158 (176)
T ss_pred             EEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEe
Confidence            999999987      467777777777765432       4789999999999876544333222334444567899999


Q ss_pred             CCCCCCHHHHHHHHHHh
Q 028986          178 AKTADNINQLFEVLITC  194 (200)
Q Consensus       178 ~~~~~~i~~~~~~i~~~  194 (200)
                      ++++.|++++++++.+.
T Consensus       159 a~~~~gl~~l~~~l~~~  175 (176)
T cd01881         159 AKTEEGLDELIRAIYEL  175 (176)
T ss_pred             hhhhcCHHHHHHHHHhh
Confidence            99999999999998765

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>PRK15494 era GTPase Era; Provisional

Probab=99.90  E-value=2.6e-22  Score=154.83  Aligned_cols=156  Identities=21%  Similarity=0.293  Sum_probs=105.8

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccc-cceeEEEEEEEecCCcEEEEEEEeCCChhh-hh-------hccc
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVT-VGASFLSQTIALQDSTTVKFEIWDTAGQER-YA-------ALAP  101 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-~~-------~~~~  101 (200)
                      .+.++|+++|.+|||||||+|+|++..+....... .+.......+...+   .++.+|||||..+ +.       ....
T Consensus        50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~---~qi~~~DTpG~~~~~~~l~~~~~r~~~  126 (339)
T PRK15494         50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD---TQVILYDTPGIFEPKGSLEKAMVRCAW  126 (339)
T ss_pred             cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC---eEEEEEECCCcCCCcccHHHHHHHHHH
Confidence            46679999999999999999999998764321111 11112222233322   4789999999732 11       1122


Q ss_pred             ccccCccEEEEEEeCCCHHhHHHH-HHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcC--CeEEEecC
Q 028986          102 LYYRGAAVAVVVYDITSPDSFNKA-QYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNG--MFFIETSA  178 (200)
Q Consensus       102 ~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~S~  178 (200)
                      ..+..+|++++|+|..+.  +... ..|+..+...   +.|+++|+||+|+...   ...++.+++....  ..++++||
T Consensus       127 ~~l~~aDvil~VvD~~~s--~~~~~~~il~~l~~~---~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i~~iSA  198 (339)
T PRK15494        127 SSLHSADLVLLIIDSLKS--FDDITHNILDKLRSL---NIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLLFPISA  198 (339)
T ss_pred             HHhhhCCEEEEEEECCCC--CCHHHHHHHHHHHhc---CCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEEEEEec
Confidence            346789999999997763  4333 3455555433   4567889999998542   2445556655543  57999999


Q ss_pred             CCCCCHHHHHHHHHHhhcc
Q 028986          179 KTADNINQLFEVLITCTSS  197 (200)
Q Consensus       179 ~~~~~i~~~~~~i~~~~~~  197 (200)
                      ++|.|+++++++|.+.+.+
T Consensus       199 ktg~gv~eL~~~L~~~l~~  217 (339)
T PRK15494        199 LSGKNIDGLLEYITSKAKI  217 (339)
T ss_pred             cCccCHHHHHHHHHHhCCC
Confidence            9999999999999998765

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.90  E-value=2.8e-22  Score=138.78  Aligned_cols=146  Identities=22%  Similarity=0.254  Sum_probs=102.9

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcCCCCCC-CccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhh--------cccccc
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRGQFDPT-SKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAA--------LAPLYY  104 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--------~~~~~~  104 (200)
                      ++|+++|++|+|||||++++++...... ..+..........+...   ..++.+|||||..+...        .....+
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~   78 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIG---GIPVRLIDTAGIRETEDEIEKIGIERAREAI   78 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeC---CEEEEEEECCCcCCCcchHHHHHHHHHHHHH
Confidence            5799999999999999999998754221 11222222222233332   25789999999643321        122456


Q ss_pred             cCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCH
Q 028986          105 RGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNI  184 (200)
Q Consensus       105 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i  184 (200)
                      ..+|++++|+|++++.+......+..      ....|+++|+||+|+......       .......+++++|++++.|+
T Consensus        79 ~~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~v  145 (157)
T cd04164          79 EEADLVLFVIDASRGLDEEDLEILEL------PADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTGEGL  145 (157)
T ss_pred             hhCCEEEEEEECCCCCCHHHHHHHHh------hcCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCCCCH
Confidence            78999999999998766665543322      447899999999998754432       33445678999999999999


Q ss_pred             HHHHHHHHHhh
Q 028986          185 NQLFEVLITCT  195 (200)
Q Consensus       185 ~~~~~~i~~~~  195 (200)
                      ++++++|.+.+
T Consensus       146 ~~l~~~l~~~~  156 (157)
T cd04164         146 DELKEALLELA  156 (157)
T ss_pred             HHHHHHHHHhh
Confidence            99999998765

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.90  E-value=9.5e-22  Score=154.43  Aligned_cols=157  Identities=21%  Similarity=0.189  Sum_probs=109.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhh----hhhccccc---ccCc
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQER----YAALAPLY---YRGA  107 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----~~~~~~~~---~~~~  107 (200)
                      .|+++|.|+||||||+++|++........+..+.......+.+.++  ..+.+||+||..+    ...+...+   +..+
T Consensus       160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~--~~~~laD~PGliega~~~~gLg~~fLrhier~  237 (424)
T PRK12297        160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDG--RSFVMADIPGLIEGASEGVGLGHQFLRHIERT  237 (424)
T ss_pred             cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCC--ceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence            7899999999999999999986532111111112222222333222  4799999999532    11222223   4569


Q ss_pred             cEEEEEEeCCCH---HhHHHHHHHHHHHHHcCC--CCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCC
Q 028986          108 AVAVVVYDITSP---DSFNKAQYWVKELQKHGS--PDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTAD  182 (200)
Q Consensus       108 d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~  182 (200)
                      +++++|+|+++.   +.++....|.+.+.....  .+.|+++|+||+|+...    .+...++++.++.+++++||+++.
T Consensus       238 ~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~----~e~l~~l~~~l~~~i~~iSA~tge  313 (424)
T PRK12297        238 RVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA----EENLEEFKEKLGPKVFPISALTGQ  313 (424)
T ss_pred             CEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC----HHHHHHHHHHhCCcEEEEeCCCCC
Confidence            999999999864   567777777777766532  47899999999998432    344556666667789999999999


Q ss_pred             CHHHHHHHHHHhhcc
Q 028986          183 NINQLFEVLITCTSS  197 (200)
Q Consensus       183 ~i~~~~~~i~~~~~~  197 (200)
                      |+++++++|.+.+.+
T Consensus       314 GI~eL~~~L~~~l~~  328 (424)
T PRK12297        314 GLDELLYAVAELLEE  328 (424)
T ss_pred             CHHHHHHHHHHHHHh
Confidence            999999999988765

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.89  E-value=7.7e-23  Score=135.52  Aligned_cols=114  Identities=32%  Similarity=0.662  Sum_probs=84.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCC--CCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEE
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQFD--PTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVV  112 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~  112 (200)
                      ||+|+|++|||||||+++|++..+.  .......+..+....... ......+.+||++|++.+...+..++..+|++++
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~il   79 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVV-DGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVIL   79 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEE-TTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEE
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEe-cCCceEEEEEecCccceecccccchhhcCcEEEE
Confidence            7999999999999999999998765  122233333443333333 3443569999999999888887778999999999


Q ss_pred             EEeCCCHHhHHHHHH---HHHHHHHcCCCCCeEEEEEeCCC
Q 028986          113 VYDITSPDSFNKAQY---WVKELQKHGSPDIVMALVGNKAD  150 (200)
Q Consensus       113 v~d~~~~~s~~~~~~---~~~~i~~~~~~~~p~iiv~nK~D  150 (200)
                      |||++++.+++.+..   |+..+... ..++|+++|+||.|
T Consensus        80 v~D~s~~~s~~~~~~~~~~l~~~~~~-~~~~piilv~nK~D  119 (119)
T PF08477_consen   80 VYDLSDPESLEYLSQLLKWLKNIRKR-DKNIPIILVGNKSD  119 (119)
T ss_dssp             EEECCGHHHHHHHHHHHHHHHHHHHH-SSCSEEEEEEE-TC
T ss_pred             EEcCCChHHHHHHHHHHHHHHHHHcc-CCCCCEEEEEeccC
Confidence            999999999988744   45555554 45699999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.89  E-value=3.1e-22  Score=142.76  Aligned_cols=155  Identities=15%  Similarity=0.104  Sum_probs=109.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCCCCcccc----------------ceeEEEEEEEecCCcEEEEEEEeCCChhhhhh
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTV----------------GASFLSQTIALQDSTTVKFEIWDTAGQERYAA   98 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~   98 (200)
                      +|+|+|.+|+|||||+++|++...........                ............   ...+.+||+||...+..
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~liDtpG~~~~~~   77 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWP---DRRVNFIDTPGHEDFSS   77 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeC---CEEEEEEeCCCcHHHHH
Confidence            58999999999999999999876544331111                111111122221   36899999999988888


Q ss_pred             cccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcC--CHHHHHHHHHH--------
Q 028986           99 LAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREV--PAQDGIEYAEK--------  168 (200)
Q Consensus        99 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~--~~~~~~~~~~~--------  168 (200)
                      .+..+++.+|++++|+|++.+.+... ..++..+..   .+.|+++|+||+|+......  ..+++.+....        
T Consensus        78 ~~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (189)
T cd00881          78 EVIRGLSVSDGAILVVDANEGVQPQT-REHLRIARE---GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKE  153 (189)
T ss_pred             HHHHHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH---CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhh
Confidence            88888999999999999987654332 233344433   47899999999998753221  12223333332        


Q ss_pred             ------cCCeEEEecCCCCCCHHHHHHHHHHhhc
Q 028986          169 ------NGMFFIETSAKTADNINQLFEVLITCTS  196 (200)
Q Consensus       169 ------~~~~~~~~S~~~~~~i~~~~~~i~~~~~  196 (200)
                            ...+++++|++++.|+++++++|.+.+.
T Consensus       154 ~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~  187 (189)
T cd00881         154 EGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP  187 (189)
T ss_pred             hhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence                  3567999999999999999999998875

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>KOG1673 consensus Ras GTPases [General function prediction only]

Probab=99.89  E-value=1.7e-22  Score=133.61  Aligned_cols=165  Identities=22%  Similarity=0.514  Sum_probs=141.7

Q ss_pred             CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCcc
Q 028986           29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAA  108 (200)
Q Consensus        29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d  108 (200)
                      ...-.+||.++|++..|||||+-.+.++.++..+..+.+..+..+++.+.... +.+.+||..|++++.....-..+.+-
T Consensus        16 ~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~-IsfSIwdlgG~~~~~n~lPiac~dsv   94 (205)
T KOG1673|consen   16 SNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTD-ISFSIWDLGGQREFINMLPIACKDSV   94 (205)
T ss_pred             ccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceE-EEEEEEecCCcHhhhccCceeecCcE
Confidence            34567899999999999999999999999988889999999999988885444 89999999999999999999999999


Q ss_pred             EEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCC-----cCCHHHHHHHHHHcCCeEEEecCCCCCC
Q 028986          109 VAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKR-----EVPAQDGIEYAEKNGMFFIETSAKTADN  183 (200)
Q Consensus       109 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~-----~~~~~~~~~~~~~~~~~~~~~S~~~~~~  183 (200)
                      +++++||++.+.++..+..|+.+.+......+|+ +|++|.|..-..     +.-..+++++++..+++++.||+..+.|
T Consensus        95 aIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiPi-lvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sIN  173 (205)
T KOG1673|consen   95 AILFMFDLTRRSTLNSIKEWYRQARGLNKTAIPI-LVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSIN  173 (205)
T ss_pred             EEEEEEecCchHHHHHHHHHHHHHhccCCccceE-EeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeecccccc
Confidence            9999999999999999999999998887767775 679999974321     1123455677888899999999999999


Q ss_pred             HHHHHHHHHHhh
Q 028986          184 INQLFEVLITCT  195 (200)
Q Consensus       184 i~~~~~~i~~~~  195 (200)
                      ++.+|..++-++
T Consensus       174 v~KIFK~vlAkl  185 (205)
T KOG1673|consen  174 VQKIFKIVLAKL  185 (205)
T ss_pred             HHHHHHHHHHHH
Confidence            999999887654

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.89  E-value=3.7e-22  Score=158.34  Aligned_cols=154  Identities=19%  Similarity=0.212  Sum_probs=109.8

Q ss_pred             CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCC-CccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhh--------cc
Q 028986           30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPT-SKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAA--------LA  100 (200)
Q Consensus        30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--------~~  100 (200)
                      ....++|+++|++|+|||||+|+|++...... ..+..+.+.....+.+. +  ..+.+|||||..+...        ..
T Consensus       200 ~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~-g--~~v~l~DTaG~~~~~~~ie~~gi~~~  276 (442)
T TIGR00450       200 LDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELN-G--ILIKLLDTAGIREHADFVERLGIEKS  276 (442)
T ss_pred             hhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEEC-C--EEEEEeeCCCcccchhHHHHHHHHHH
Confidence            34568999999999999999999998754221 22223333334444443 2  5679999999743322        22


Q ss_pred             cccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCC
Q 028986          101 PLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKT  180 (200)
Q Consensus       101 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~  180 (200)
                      ..+++++|++++|+|++++.+.+..  |+..+.   ..+.|+++|+||+|+...      ....++..++.+++++|+++
T Consensus       277 ~~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~---~~~~piIlV~NK~Dl~~~------~~~~~~~~~~~~~~~vSak~  345 (442)
T TIGR00450       277 FKAIKQADLVIYVLDASQPLTKDDF--LIIDLN---KSKKPFILVLNKIDLKIN------SLEFFVSSKVLNSSNLSAKQ  345 (442)
T ss_pred             HHHHhhCCEEEEEEECCCCCChhHH--HHHHHh---hCCCCEEEEEECccCCCc------chhhhhhhcCCceEEEEEec
Confidence            4577899999999999988776654  655553   246799999999998543      12344556778899999997


Q ss_pred             CCCHHHHHHHHHHhhccc
Q 028986          181 ADNINQLFEVLITCTSSY  198 (200)
Q Consensus       181 ~~~i~~~~~~i~~~~~~~  198 (200)
                       .|+.++|+.|.+.+.+.
T Consensus       346 -~gI~~~~~~L~~~i~~~  362 (442)
T TIGR00450       346 -LKIKALVDLLTQKINAF  362 (442)
T ss_pred             -CCHHHHHHHHHHHHHHH
Confidence             68999999888877653

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.89  E-value=3.4e-22  Score=160.75  Aligned_cols=161  Identities=24%  Similarity=0.237  Sum_probs=109.2

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCC-CCccccceeEEEEEEEecCCcEEEEEEEeCCCh----------hhhhhc
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDP-TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ----------ERYAAL   99 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~----------~~~~~~   99 (200)
                      ...++|+|+|.+++|||||+|+|++..+.. ...+..+.+.....+.. ++  ..+.+|||||.          +.+...
T Consensus       209 ~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~-~~--~~~~l~DTaG~~~~~~~~~~~e~~~~~  285 (472)
T PRK03003        209 GGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIEL-GG--KTWRFVDTAGLRRRVKQASGHEYYASL  285 (472)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEE-CC--EEEEEEECCCccccccccchHHHHHHH
Confidence            346899999999999999999999976432 22233333333334444 23  35789999994          223322


Q ss_pred             c-cccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcC--CHHHHHH-HHHHcCCeEEE
Q 028986          100 A-PLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREV--PAQDGIE-YAEKNGMFFIE  175 (200)
Q Consensus       100 ~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~--~~~~~~~-~~~~~~~~~~~  175 (200)
                      . ..+++.+|++++|+|++++.+...+. ++..+..   .+.|+++|+||+|+......  ...++.+ +.....+++++
T Consensus       286 ~~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~---~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~  361 (472)
T PRK03003        286 RTHAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE---AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVN  361 (472)
T ss_pred             HHHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEE
Confidence            2 23578899999999999987776654 4444433   47899999999999643211  0111111 12223468999


Q ss_pred             ecCCCCCCHHHHHHHHHHhhccc
Q 028986          176 TSAKTADNINQLFEVLITCTSSY  198 (200)
Q Consensus       176 ~S~~~~~~i~~~~~~i~~~~~~~  198 (200)
                      +||++|.|++++|+.+.+.+.+.
T Consensus       362 ~SAk~g~gv~~lf~~i~~~~~~~  384 (472)
T PRK03003        362 ISAKTGRAVDKLVPALETALESW  384 (472)
T ss_pred             EECCCCCCHHHHHHHHHHHHHHh
Confidence            99999999999999999887654

>cd01889 SelB_euk SelB subfamily

Probab=99.89  E-value=2.6e-22  Score=143.83  Aligned_cols=159  Identities=18%  Similarity=0.103  Sum_probs=101.3

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcC----CCCCCC-----ccccceeEEEEEEEec---------CCcEEEEEEEeCCChhh
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRG----QFDPTS-----KVTVGASFLSQTIALQ---------DSTTVKFEIWDTAGQER   95 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~----~~~~~~-----~~~~~~~~~~~~~~~~---------~~~~~~~~l~D~~g~~~   95 (200)
                      +||+++|++++|||||+++|+..    .+....     ..+....+....+...         .+....+.+|||||+..
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~   80 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS   80 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence            58999999999999999999973    111111     1222222222222210         12247899999999876


Q ss_pred             hhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCc--CCHHHHHHHHH------
Q 028986           96 YAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKRE--VPAQDGIEYAE------  167 (200)
Q Consensus        96 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~--~~~~~~~~~~~------  167 (200)
                      +..........+|++++|+|+++.........+. .. ..  .+.|+++|+||+|+.....  ...++..+...      
T Consensus        81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~-~~-~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~  156 (192)
T cd01889          81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV-IG-EI--LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKT  156 (192)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH-HH-HH--cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence            5444444566789999999998753333322221 11 11  2568999999999864322  11222222111      


Q ss_pred             -HcCCeEEEecCCCCCCHHHHHHHHHHhhc
Q 028986          168 -KNGMFFIETSAKTADNINQLFEVLITCTS  196 (200)
Q Consensus       168 -~~~~~~~~~S~~~~~~i~~~~~~i~~~~~  196 (200)
                       ..+++++++|++++.|+++++++|.+++.
T Consensus       157 ~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~  186 (192)
T cd01889         157 RFKNSPIIPVSAKPGGGEAELGKDLNNLIV  186 (192)
T ss_pred             CcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence             13578999999999999999999988764

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.89  E-value=4.4e-22  Score=138.10  Aligned_cols=140  Identities=16%  Similarity=0.204  Sum_probs=98.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCCh----hhhhhcccccccCccEE
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ----ERYAALAPLYYRGAAVA  110 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~----~~~~~~~~~~~~~~d~~  110 (200)
                      +|+++|.+++|||||+|+|.+....  ...+.       .+.+...     .+||+||.    .++.......++.+|++
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~~~~~--~~~~~-------~v~~~~~-----~~iDtpG~~~~~~~~~~~~~~~~~~ad~i   68 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQGNYTL--ARKTQ-------AVEFNDK-----GDIDTPGEYFSHPRWYHALITTLQDVDML   68 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCcc--Cccce-------EEEECCC-----CcccCCccccCCHHHHHHHHHHHhcCCEE
Confidence            6999999999999999998875311  11111       1122111     26999996    22222223347889999


Q ss_pred             EEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCC--eEEEecCCCCCCHHHHH
Q 028986          111 VVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGM--FFIETSAKTADNINQLF  188 (200)
Q Consensus       111 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~--~~~~~S~~~~~~i~~~~  188 (200)
                      ++|+|+++..++.  ..|+..+    ..+.|+++++||.|+...   ..+...+++.+.+.  +++++|++++.|++++|
T Consensus        69 l~v~d~~~~~s~~--~~~~~~~----~~~~~ii~v~nK~Dl~~~---~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~  139 (158)
T PRK15467         69 IYVHGANDPESRL--PAGLLDI----GVSKRQIAVISKTDMPDA---DVAATRKLLLETGFEEPIFELNSHDPQSVQQLV  139 (158)
T ss_pred             EEEEeCCCccccc--CHHHHhc----cCCCCeEEEEEccccCcc---cHHHHHHHHHHcCCCCCEEEEECCCccCHHHHH
Confidence            9999999876542  2333332    236789999999998542   34556677777765  89999999999999999


Q ss_pred             HHHHHhhcc
Q 028986          189 EVLITCTSS  197 (200)
Q Consensus       189 ~~i~~~~~~  197 (200)
                      ++|.+.+.+
T Consensus       140 ~~l~~~~~~  148 (158)
T PRK15467        140 DYLASLTKQ  148 (158)
T ss_pred             HHHHHhchh
Confidence            999888754

>PRK11058 GTPase HflX; Provisional

Probab=99.89  E-value=5.9e-22  Score=156.40  Aligned_cols=157  Identities=21%  Similarity=0.170  Sum_probs=108.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhh--hhcc------ccccc
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERY--AALA------PLYYR  105 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~--~~~~------~~~~~  105 (200)
                      .+|+|+|.+|+|||||+|+|++........+..+.+.....+.+.+..  .+.+|||+|..+.  ...+      ...+.
T Consensus       198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~--~~~l~DTaG~~r~lp~~lve~f~~tl~~~~  275 (426)
T PRK11058        198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVG--ETVLADTVGFIRHLPHDLVAAFKATLQETR  275 (426)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCC--eEEEEecCcccccCCHHHHHHHHHHHHHhh
Confidence            589999999999999999999876543222223333333444443322  5789999997321  1112      22367


Q ss_pred             CccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCe-EEEecCCCCCCH
Q 028986          106 GAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMF-FIETSAKTADNI  184 (200)
Q Consensus       106 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~S~~~~~~i  184 (200)
                      .+|++++|+|++++.+.+.+..|...+......++|+++|+||+|+.....   ... . ....+.+ ++++||++|.|+
T Consensus       276 ~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~---~~~-~-~~~~~~~~~v~ISAktG~GI  350 (426)
T PRK11058        276 QATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE---PRI-D-RDEENKPIRVWLSAQTGAGI  350 (426)
T ss_pred             cCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchh---HHH-H-HHhcCCCceEEEeCCCCCCH
Confidence            899999999999988777776565555555455789999999999864311   111 1 1123444 588999999999


Q ss_pred             HHHHHHHHHhhcc
Q 028986          185 NQLFEVLITCTSS  197 (200)
Q Consensus       185 ~~~~~~i~~~~~~  197 (200)
                      ++++++|.+.+..
T Consensus       351 deL~e~I~~~l~~  363 (426)
T PRK11058        351 PLLFQALTERLSG  363 (426)
T ss_pred             HHHHHHHHHHhhh
Confidence            9999999988753

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=99.89  E-value=3.4e-21  Score=127.16  Aligned_cols=166  Identities=23%  Similarity=0.368  Sum_probs=136.1

Q ss_pred             CCceeeEEEEcCCCCcHHHHHHHHHcCCCCC--CCccccceeEEEEEEEecCCcEEEEEEEeCCChhhh-hhcccccccC
Q 028986           30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDP--TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERY-AALAPLYYRG  106 (200)
Q Consensus        30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-~~~~~~~~~~  106 (200)
                      -.+..||+|+|..++|||+++..|......+  ...+|++..| ...+..+.+..-++.++||.|.... ..+-.+|++-
T Consensus         6 mGk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY-~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~   84 (198)
T KOG3883|consen    6 MGKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIY-VASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQF   84 (198)
T ss_pred             hCcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhhe-eEeeecCCChhheEEEeecccccCchhhhhHhHhcc
Confidence            3456799999999999999999998765433  2334444444 5555555665568999999997655 5677889999


Q ss_pred             ccEEEEEEeCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHH
Q 028986          107 AAVAVVVYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNIN  185 (200)
Q Consensus       107 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~  185 (200)
                      +|++++||+..+++||+.+..+...|.+.. +..+||++++||+|+.++.++..+.+..+|+...++++++++.+...+-
T Consensus        85 aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~  164 (198)
T KOG3883|consen   85 ADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLY  164 (198)
T ss_pred             CceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhh
Confidence            999999999999999988766555565544 5679999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhc
Q 028986          186 QLFEVLITCTS  196 (200)
Q Consensus       186 ~~~~~i~~~~~  196 (200)
                      +-|.++...+.
T Consensus       165 epf~~l~~rl~  175 (198)
T KOG3883|consen  165 EPFTYLASRLH  175 (198)
T ss_pred             hHHHHHHHhcc
Confidence            99999987764

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.89  E-value=1.9e-21  Score=154.64  Aligned_cols=162  Identities=19%  Similarity=0.104  Sum_probs=106.1

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhh----hh---hccccccc
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQER----YA---ALAPLYYR  105 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----~~---~~~~~~~~  105 (200)
                      ...|+|+|.|+||||||+|+|.+........+..+.......+.+.+   .++.+||+||..+    ..   ...-..+.
T Consensus       159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~---~~f~laDtPGliegas~g~gLg~~fLrhie  235 (500)
T PRK12296        159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD---TRFTVADVPGLIPGASEGKGLGLDFLRHIE  235 (500)
T ss_pred             cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC---eEEEEEECCCCccccchhhHHHHHHHHHHH
Confidence            34789999999999999999998643221112222222222233322   5799999999421    11   11122357


Q ss_pred             CccEEEEEEeCCCH----HhHHHHHHHHHHHHHcC-----------CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcC
Q 028986          106 GAAVAVVVYDITSP----DSFNKAQYWVKELQKHG-----------SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNG  170 (200)
Q Consensus       106 ~~d~~i~v~d~~~~----~s~~~~~~~~~~i~~~~-----------~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~  170 (200)
                      .+|++|+|+|+++.    +.++.+..+...+....           ....|+++|+||+|+.+..+. .+.........+
T Consensus       236 radvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el-~e~l~~~l~~~g  314 (500)
T PRK12296        236 RCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAREL-AEFVRPELEARG  314 (500)
T ss_pred             hcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHH-HHHHHHHHHHcC
Confidence            79999999999852    34444444444443321           246899999999998654332 222233344557


Q ss_pred             CeEEEecCCCCCCHHHHHHHHHHhhccc
Q 028986          171 MFFIETSAKTADNINQLFEVLITCTSSY  198 (200)
Q Consensus       171 ~~~~~~S~~~~~~i~~~~~~i~~~~~~~  198 (200)
                      ++++++|++++.|+++++.+|.+.+.+.
T Consensus       315 ~~Vf~ISA~tgeGLdEL~~~L~ell~~~  342 (500)
T PRK12296        315 WPVFEVSAASREGLRELSFALAELVEEA  342 (500)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence            8999999999999999999999887653

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.89  E-value=1.3e-21  Score=160.31  Aligned_cols=157  Identities=20%  Similarity=0.214  Sum_probs=113.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCC-------CCCCCc------cccceeEEEEEE--Eec--CCcEEEEEEEeCCChhhhh
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQ-------FDPTSK------VTVGASFLSQTI--ALQ--DSTTVKFEIWDTAGQERYA   97 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~-------~~~~~~------~~~~~~~~~~~~--~~~--~~~~~~~~l~D~~g~~~~~   97 (200)
                      ||+|+|+.++|||||+++|+...       +...+.      ...+.+.....+  .+.  ++..+.+.+|||||+.++.
T Consensus         5 Ni~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF~   84 (595)
T TIGR01393         5 NFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFS   84 (595)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHHH
Confidence            79999999999999999998742       111111      111333332222  222  4556899999999999999


Q ss_pred             hcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCC---eEE
Q 028986           98 ALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGM---FFI  174 (200)
Q Consensus        98 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~---~~~  174 (200)
                      ..+..++..+|++|+|+|+++..+.+....|...+.    .++|+++|+||+|+....  ..+...++...+++   .++
T Consensus        85 ~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~ipiIiViNKiDl~~~~--~~~~~~el~~~lg~~~~~vi  158 (595)
T TIGR01393        85 YEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE----NDLEIIPVINKIDLPSAD--PERVKKEIEEVIGLDASEAI  158 (595)
T ss_pred             HHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cCCCEEEEEECcCCCccC--HHHHHHHHHHHhCCCcceEE
Confidence            889999999999999999998766666555544332    367899999999986432  12233445555555   489


Q ss_pred             EecCCCCCCHHHHHHHHHHhhcc
Q 028986          175 ETSAKTADNINQLFEVLITCTSS  197 (200)
Q Consensus       175 ~~S~~~~~~i~~~~~~i~~~~~~  197 (200)
                      ++||++|.|++++|++|.+.+..
T Consensus       159 ~vSAktG~GI~~Lle~I~~~lp~  181 (595)
T TIGR01393       159 LASAKTGIGIEEILEAIVKRVPP  181 (595)
T ss_pred             EeeccCCCCHHHHHHHHHHhCCC
Confidence            99999999999999999987753

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.88  E-value=4.4e-22  Score=158.68  Aligned_cols=149  Identities=24%  Similarity=0.285  Sum_probs=107.0

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHcCCCCC-CCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhc--------ccc
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDP-TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAAL--------APL  102 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--------~~~  102 (200)
                      ..++|+++|.+|+|||||+|+|++..... ...+..+.++....+.+. +  ..+.+|||||..+....        ...
T Consensus       214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~-g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~  290 (449)
T PRK05291        214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLD-G--IPLRLIDTAGIRETDDEVEKIGIERSRE  290 (449)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEEC-C--eEEEEEeCCCCCCCccHHHHHHHHHHHH
Confidence            45799999999999999999999876422 122222333333444442 2  46899999997543211        234


Q ss_pred             cccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCC
Q 028986          103 YYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTAD  182 (200)
Q Consensus       103 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~  182 (200)
                      +++++|++++|+|++++.+++....|..      ..+.|+++|+||+|+.......        ...+.+++++|++++.
T Consensus       291 ~~~~aD~il~VvD~s~~~s~~~~~~l~~------~~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSAktg~  356 (449)
T PRK05291        291 AIEEADLVLLVLDASEPLTEEDDEILEE------LKDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISAKTGE  356 (449)
T ss_pred             HHHhCCEEEEEecCCCCCChhHHHHHHh------cCCCCcEEEEEhhhccccchhh--------hccCCceEEEEeeCCC
Confidence            6788999999999998877665444432      3468999999999986543221        3345679999999999


Q ss_pred             CHHHHHHHHHHhhcc
Q 028986          183 NINQLFEVLITCTSS  197 (200)
Q Consensus       183 ~i~~~~~~i~~~~~~  197 (200)
                      |+++++++|.+.+..
T Consensus       357 GI~~L~~~L~~~l~~  371 (449)
T PRK05291        357 GIDELREAIKELAFG  371 (449)
T ss_pred             CHHHHHHHHHHHHhh
Confidence            999999999988754

>cd01894 EngA1 EngA1 subfamily

Probab=99.88  E-value=7.5e-22  Score=136.67  Aligned_cols=147  Identities=22%  Similarity=0.161  Sum_probs=98.1

Q ss_pred             EEEcCCCCcHHHHHHHHHcCCCCC-CCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhh--------cccccccCc
Q 028986           37 VLLGDSGVGKSCIVLRFVRGQFDP-TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAA--------LAPLYYRGA  107 (200)
Q Consensus        37 ~i~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--------~~~~~~~~~  107 (200)
                      +++|.+|+|||||+++|++..... ...+....+.........+   ..+.+|||||......        .+...++.+
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~   77 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG---REFILIDTGGIEPDDEGISKEIREQAELAIEEA   77 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC---eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhC
Confidence            479999999999999999864211 1111122222222333322   5799999999765332        334567889


Q ss_pred             cEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCC-eEEEecCCCCCCHHH
Q 028986          108 AVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGM-FFIETSAKTADNINQ  186 (200)
Q Consensus       108 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~i~~  186 (200)
                      |++++|+|..++.+.... .+...+..   ...|+++|+||+|+......     .......+. .++++|++++.|+++
T Consensus        78 d~ii~v~d~~~~~~~~~~-~~~~~~~~---~~~piiiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gv~~  148 (157)
T cd01894          78 DVILFVVDGREGLTPADE-EIAKYLRK---SKKPVILVVNKVDNIKEEDE-----AAEFYSLGFGEPIPISAEHGRGIGD  148 (157)
T ss_pred             CEEEEEEeccccCCccHH-HHHHHHHh---cCCCEEEEEECcccCChHHH-----HHHHHhcCCCCeEEEecccCCCHHH
Confidence            999999999876443332 22233333   25899999999998654321     223334555 789999999999999


Q ss_pred             HHHHHHHhh
Q 028986          187 LFEVLITCT  195 (200)
Q Consensus       187 ~~~~i~~~~  195 (200)
                      ++++|++.+
T Consensus       149 l~~~l~~~~  157 (157)
T cd01894         149 LLDAILELL  157 (157)
T ss_pred             HHHHHHhhC
Confidence            999998764

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.88  E-value=2.6e-21  Score=139.01  Aligned_cols=161  Identities=19%  Similarity=0.163  Sum_probs=105.9

Q ss_pred             CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCCh----------hhhhh
Q 028986           29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ----------ERYAA   98 (200)
Q Consensus        29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~----------~~~~~   98 (200)
                      .....++|+++|++|+|||||+++|++..+.....++.+.+........ +   ..+.+|||||.          +.+..
T Consensus        20 ~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~-~---~~l~l~DtpG~~~~~~~~~~~~~~~~   95 (196)
T PRK00454         20 PPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV-N---DKLRLVDLPGYGYAKVSKEEKEKWQK   95 (196)
T ss_pred             CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec-C---CeEEEeCCCCCCCcCCCchHHHHHHH
Confidence            3446789999999999999999999997644444444443332222221 1   57999999993          33444


Q ss_pred             cccccccC---ccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCC--HHHHHHHHHHcCCeE
Q 028986           99 LAPLYYRG---AAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVP--AQDGIEYAEKNGMFF  173 (200)
Q Consensus        99 ~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~  173 (200)
                      ....++..   .+++++++|.+.+.+.... .+...+.   ..+.|+++++||+|+....+..  .+.+.+.......++
T Consensus        96 ~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~---~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~  171 (196)
T PRK00454         96 LIEEYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLK---EYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEV  171 (196)
T ss_pred             HHHHHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHH---HcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCce
Confidence            44445543   4678888998875333221 1122222   2367899999999986543211  122334444346789


Q ss_pred             EEecCCCCCCHHHHHHHHHHhhcc
Q 028986          174 IETSAKTADNINQLFEVLITCTSS  197 (200)
Q Consensus       174 ~~~S~~~~~~i~~~~~~i~~~~~~  197 (200)
                      +++|++++.|+++++++|.+.+.+
T Consensus       172 ~~~Sa~~~~gi~~l~~~i~~~~~~  195 (196)
T PRK00454        172 ILFSSLKKQGIDELRAAIAKWLAE  195 (196)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHhcC
Confidence            999999999999999999988765

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=5.9e-22  Score=128.85  Aligned_cols=159  Identities=25%  Similarity=0.404  Sum_probs=126.3

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA  110 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  110 (200)
                      .++++|+++|-.++||||++..|+.+... +..++.+  +...++.+.+   +.+.+||.+|++..+.+|.+|+....++
T Consensus        15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~~-~~ipTvG--FnvetVtykN---~kfNvwdvGGqd~iRplWrhYy~gtqgl   88 (180)
T KOG0071|consen   15 NKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVG--FNVETVTYKN---VKFNVWDVGGQDKIRPLWRHYYTGTQGL   88 (180)
T ss_pred             cccceEEEEecccCCceehhhHHhcCCCc-ccccccc--eeEEEEEeee---eEEeeeeccCchhhhHHHHhhccCCceE
Confidence            45889999999999999999999986532 2334444  4455566655   7899999999999999999999999999


Q ss_pred             EEEEeCCCHHhHHHHHHHHHHHH-HcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHH-----cCCeEEEecCCCCCCH
Q 028986          111 VVVYDITSPDSFNKAQYWVKELQ-KHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEK-----NGMFFIETSAKTADNI  184 (200)
Q Consensus       111 i~v~d~~~~~s~~~~~~~~~~i~-~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~S~~~~~~i  184 (200)
                      |||+|..+++-++..+..+..+. ...-.+.|+++.+||.|+....  ..+++..+.+.     ....+.++++.+|.++
T Consensus        89 IFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~--~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL  166 (180)
T KOG0071|consen   89 IFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAM--KPQEIQDKLELERIRDRNWYVQPSCALSGDGL  166 (180)
T ss_pred             EEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCccccccc--CHHHHHHHhccccccCCccEeeccccccchhH
Confidence            99999999988888876666544 3445688999999999997653  35566555432     3456889999999999


Q ss_pred             HHHHHHHHHhhcc
Q 028986          185 NQLFEVLITCTSS  197 (200)
Q Consensus       185 ~~~~~~i~~~~~~  197 (200)
                      .+-|.||.+.+.+
T Consensus       167 ~eglswlsnn~~~  179 (180)
T KOG0071|consen  167 KEGLSWLSNNLKE  179 (180)
T ss_pred             HHHHHHHHhhccC
Confidence            9999999987654

>PRK00089 era GTPase Era; Reviewed

Probab=99.88  E-value=3.3e-21  Score=146.57  Aligned_cols=160  Identities=19%  Similarity=0.179  Sum_probs=106.0

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhh--------hhccccc
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERY--------AALAPLY  103 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~--------~~~~~~~  103 (200)
                      +.-.|+|+|++|||||||+|+|++...................+... +. .++.++||||....        .......
T Consensus         4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~-~~-~qi~~iDTPG~~~~~~~l~~~~~~~~~~~   81 (292)
T PRK00089          4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTE-DD-AQIIFVDTPGIHKPKRALNRAMNKAAWSS   81 (292)
T ss_pred             eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEc-CC-ceEEEEECCCCCCchhHHHHHHHHHHHHH
Confidence            34569999999999999999999976543332222222212222221 22 68999999995321        2333445


Q ss_pred             ccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcC-CeEEEecCCCCC
Q 028986          104 YRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNG-MFFIETSAKTAD  182 (200)
Q Consensus       104 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~S~~~~~  182 (200)
                      +..+|++++|+|+++..+ .....++..+.   ..+.|+++|+||+|+.............+....+ ..++++|++++.
T Consensus        82 ~~~~D~il~vvd~~~~~~-~~~~~i~~~l~---~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~  157 (292)
T PRK00089         82 LKDVDLVLFVVDADEKIG-PGDEFILEKLK---KVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGD  157 (292)
T ss_pred             HhcCCEEEEEEeCCCCCC-hhHHHHHHHHh---hcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCC
Confidence            788999999999998321 12223333333   3368999999999997443323334444444443 579999999999


Q ss_pred             CHHHHHHHHHHhhcc
Q 028986          183 NINQLFEVLITCTSS  197 (200)
Q Consensus       183 ~i~~~~~~i~~~~~~  197 (200)
                      |+++++++|.+.+.+
T Consensus       158 gv~~L~~~L~~~l~~  172 (292)
T PRK00089        158 NVDELLDVIAKYLPE  172 (292)
T ss_pred             CHHHHHHHHHHhCCC
Confidence            999999999988754

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.88  E-value=2e-21  Score=156.26  Aligned_cols=153  Identities=20%  Similarity=0.206  Sum_probs=104.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcCCCCC-CCccccceeEEEEEEEecCCcEEEEEEEeCCChh--------hhhhcccccc
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRGQFDP-TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE--------RYAALAPLYY  104 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~--------~~~~~~~~~~  104 (200)
                      .+|+|+|.+|||||||+|+|++..... ...+..+.+.....+...+   ..+.+|||||.+        .+...+..++
T Consensus        39 ~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~---~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~  115 (472)
T PRK03003         39 PVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNG---RRFTVVDTGGWEPDAKGLQASVAEQAEVAM  115 (472)
T ss_pred             CEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECC---cEEEEEeCCCcCCcchhHHHHHHHHHHHHH
Confidence            689999999999999999999875432 2222222233333333322   468999999964        2334456678


Q ss_pred             cCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCH
Q 028986          105 RGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNI  184 (200)
Q Consensus       105 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i  184 (200)
                      +.+|++|+|+|++++.+... ..+...+..   .++|+++|+||+|+....   .+....+....+ ..+++||++|.|+
T Consensus       116 ~~aD~il~VvD~~~~~s~~~-~~i~~~l~~---~~~piilV~NK~Dl~~~~---~~~~~~~~~g~~-~~~~iSA~~g~gi  187 (472)
T PRK03003        116 RTADAVLFVVDATVGATATD-EAVARVLRR---SGKPVILAANKVDDERGE---ADAAALWSLGLG-EPHPVSALHGRGV  187 (472)
T ss_pred             HhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCCccc---hhhHHHHhcCCC-CeEEEEcCCCCCc
Confidence            89999999999998755432 334444443   478999999999985432   112122222223 3579999999999


Q ss_pred             HHHHHHHHHhhcc
Q 028986          185 NQLFEVLITCTSS  197 (200)
Q Consensus       185 ~~~~~~i~~~~~~  197 (200)
                      +++|++|++.+.+
T Consensus       188 ~eL~~~i~~~l~~  200 (472)
T PRK03003        188 GDLLDAVLAALPE  200 (472)
T ss_pred             HHHHHHHHhhccc
Confidence            9999999988754

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.88  E-value=3.1e-21  Score=157.40  Aligned_cols=156  Identities=14%  Similarity=0.194  Sum_probs=110.6

Q ss_pred             CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccE
Q 028986           30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAV  109 (200)
Q Consensus        30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~  109 (200)
                      ..+..+|+++|+.++|||||+++|.+..+.....+..+.+.....+...++.  .+.+|||||++.+...+...+..+|+
T Consensus        84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~--~i~~iDTPGhe~F~~~r~rga~~aDi  161 (587)
T TIGR00487        84 VERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGK--MITFLDTPGHEAFTSMRARGAKVTDI  161 (587)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCc--EEEEEECCCCcchhhHHHhhhccCCE
Confidence            4566789999999999999999999877655443333333333444443332  78999999999999988888999999


Q ss_pred             EEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcC---------CeEEEecCCC
Q 028986          110 AVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNG---------MFFIETSAKT  180 (200)
Q Consensus       110 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~S~~~  180 (200)
                      +++|+|+++....+... .+..   ....++|+++++||+|+...   ..+.....+...+         .+++++||++
T Consensus       162 aILVVda~dgv~~qT~e-~i~~---~~~~~vPiIVviNKiDl~~~---~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAkt  234 (587)
T TIGR00487       162 VVLVVAADDGVMPQTIE-AISH---AKAANVPIIVAINKIDKPEA---NPDRVKQELSEYGLVPEDWGGDTIFVPVSALT  234 (587)
T ss_pred             EEEEEECCCCCCHhHHH-HHHH---HHHcCCCEEEEEECcccccC---CHHHHHHHHHHhhhhHHhcCCCceEEEEECCC
Confidence            99999998642111111 1122   22347899999999998542   2233333333222         4799999999


Q ss_pred             CCCHHHHHHHHHHh
Q 028986          181 ADNINQLFEVLITC  194 (200)
Q Consensus       181 ~~~i~~~~~~i~~~  194 (200)
                      |.|+++++++|...
T Consensus       235 GeGI~eLl~~I~~~  248 (587)
T TIGR00487       235 GDGIDELLDMILLQ  248 (587)
T ss_pred             CCChHHHHHhhhhh
Confidence            99999999998653

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.88  E-value=3.1e-21  Score=154.11  Aligned_cols=160  Identities=18%  Similarity=0.171  Sum_probs=106.1

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCC-ccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhc----------
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTS-KVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAAL----------   99 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~----------   99 (200)
                      ...++|+++|.+++|||||+|+|++....... .+....+.....+.. ++  ..+.+|||||.......          
T Consensus       170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~-~~--~~~~liDT~G~~~~~~~~~~~e~~~~~  246 (429)
T TIGR03594       170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFER-NG--KKYLLIDTAGIRRKGKVTEGVEKYSVL  246 (429)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEE-CC--cEEEEEECCCccccccchhhHHHHHHH
Confidence            45689999999999999999999987532221 111222222222333 22  37899999996432211          


Q ss_pred             -ccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHH-HH----cCCeE
Q 028986          100 -APLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYA-EK----NGMFF  173 (200)
Q Consensus       100 -~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~-~~----~~~~~  173 (200)
                       ...+++.+|++++|+|++++.+..... ++..+..   .+.|+++|+||+|+..... ..++..+.. ..    ..+++
T Consensus       247 ~~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~---~~~~iiiv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~v  321 (429)
T TIGR03594       247 RTLKAIERADVVLLVLDATEGITEQDLR-IAGLILE---AGKALVIVVNKWDLVKDEK-TREEFKKELRRKLPFLDFAPI  321 (429)
T ss_pred             HHHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH---cCCcEEEEEECcccCCCHH-HHHHHHHHHHHhcccCCCCce
Confidence             123578899999999999886665543 3333333   3688999999999872211 122222222 22    24689


Q ss_pred             EEecCCCCCCHHHHHHHHHHhhccc
Q 028986          174 IETSAKTADNINQLFEVLITCTSSY  198 (200)
Q Consensus       174 ~~~S~~~~~~i~~~~~~i~~~~~~~  198 (200)
                      +++||++|.|++++|+++.+.+...
T Consensus       322 i~~SA~~g~~v~~l~~~i~~~~~~~  346 (429)
T TIGR03594       322 VFISALTGQGVDKLLDAIDEVYENA  346 (429)
T ss_pred             EEEeCCCCCCHHHHHHHHHHHHHHh
Confidence            9999999999999999999877643

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.88  E-value=1.9e-21  Score=140.34  Aligned_cols=162  Identities=16%  Similarity=0.125  Sum_probs=102.3

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcCCCCCC-----CccccceeEEEEEEE--------ec--------------C--C----
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRGQFDPT-----SKVTVGASFLSQTIA--------LQ--------------D--S----   80 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~-----~~~~~~~~~~~~~~~--------~~--------------~--~----   80 (200)
                      ++|+++|+.|+|||||+.+|.+-..+..     ...+....+......        ..              .  +    
T Consensus         1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T cd01888           1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK   80 (203)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence            4799999999999999999976421110     001111111000000        00              0  1    


Q ss_pred             cEEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcC--C
Q 028986           81 TTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREV--P  158 (200)
Q Consensus        81 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~--~  158 (200)
                      ...++.+||+||++.+...+...+..+|++++|+|++++.........+..+...  ...|+++|+||+|+......  .
T Consensus        81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~--~~~~iiivvNK~Dl~~~~~~~~~  158 (203)
T cd01888          81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM--GLKHIIIVQNKIDLVKEEQALEN  158 (203)
T ss_pred             cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc--CCCcEEEEEEchhccCHHHHHHH
Confidence            1157899999999988888888888999999999998742111111222223222  12468999999998643211  1


Q ss_pred             HHHHHHHHHHc---CCeEEEecCCCCCCHHHHHHHHHHhhcc
Q 028986          159 AQDGIEYAEKN---GMFFIETSAKTADNINQLFEVLITCTSS  197 (200)
Q Consensus       159 ~~~~~~~~~~~---~~~~~~~S~~~~~~i~~~~~~i~~~~~~  197 (200)
                      .+++.+++...   +++++++|++++.|+++++++|.+.+.+
T Consensus       159 ~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~  200 (203)
T cd01888         159 YEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT  200 (203)
T ss_pred             HHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence            12333333332   5679999999999999999999987754

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.88  E-value=4.1e-21  Score=150.04  Aligned_cols=160  Identities=20%  Similarity=0.132  Sum_probs=108.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhh-------hhcccccccCc
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERY-------AALAPLYYRGA  107 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-------~~~~~~~~~~~  107 (200)
                      .|+|+|.||||||||+|+|++........+..+.....-.+...+.  ..+.++|+||..+-       ....-..+..+
T Consensus       161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~--~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~ra  238 (390)
T PRK12298        161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDE--RSFVVADIPGLIEGASEGAGLGIRFLKHLERC  238 (390)
T ss_pred             cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCC--cEEEEEeCCCccccccchhhHHHHHHHHHHhC
Confidence            7899999999999999999986532111121221222222333222  36899999995321       11112346789


Q ss_pred             cEEEEEEeCC---CHHhHHHHHHHHHHHHHcC--CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcC--CeEEEecCCC
Q 028986          108 AVAVVVYDIT---SPDSFNKAQYWVKELQKHG--SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNG--MFFIETSAKT  180 (200)
Q Consensus       108 d~~i~v~d~~---~~~s~~~~~~~~~~i~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~S~~~  180 (200)
                      |++++|+|++   ..+.++....|++.+....  ....|+++|+||+|+...... .+.+.++....+  .+++++||++
T Consensus       239 dvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el-~~~l~~l~~~~~~~~~Vi~ISA~t  317 (390)
T PRK12298        239 RVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEA-EERAKAIVEALGWEGPVYLISAAS  317 (390)
T ss_pred             CEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHH-HHHHHHHHHHhCCCCCEEEEECCC
Confidence            9999999998   4456677777777776543  246889999999998654332 233344444443  4689999999


Q ss_pred             CCCHHHHHHHHHHhhcc
Q 028986          181 ADNINQLFEVLITCTSS  197 (200)
Q Consensus       181 ~~~i~~~~~~i~~~~~~  197 (200)
                      +.++++++++|.+.+.+
T Consensus       318 g~GIdeLl~~I~~~L~~  334 (390)
T PRK12298        318 GLGVKELCWDLMTFIEE  334 (390)
T ss_pred             CcCHHHHHHHHHHHhhh
Confidence            99999999999998865

>cd04163 Era Era subfamily

Probab=99.88  E-value=5.5e-21  Score=133.34  Aligned_cols=157  Identities=19%  Similarity=0.169  Sum_probs=102.3

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhh--------hhcccccc
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERY--------AALAPLYY  104 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~--------~~~~~~~~  104 (200)
                      ..+|+++|++|+|||||+++|.+.................... . ......+.+||+||....        .......+
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   80 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGI-Y-TDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSAL   80 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEE-E-EcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHH
Confidence            5689999999999999999999875432222111111111111 1 112267899999995322        12334457


Q ss_pred             cCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHc-CCeEEEecCCCCCC
Q 028986          105 RGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKN-GMFFIETSAKTADN  183 (200)
Q Consensus       105 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~S~~~~~~  183 (200)
                      ..+|++++|+|++++.+. ....+...+...   +.|+++|+||+|+....+...+....+.... ..+++++|++++.+
T Consensus        81 ~~~d~i~~v~d~~~~~~~-~~~~~~~~~~~~---~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  156 (168)
T cd04163          81 KDVDLVLFVVDASEPIGE-GDEFILELLKKS---KTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGEN  156 (168)
T ss_pred             HhCCEEEEEEECCCccCc-hHHHHHHHHHHh---CCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCC
Confidence            889999999999987211 112233334332   6789999999998743333333334444444 36899999999999


Q ss_pred             HHHHHHHHHHhh
Q 028986          184 INQLFEVLITCT  195 (200)
Q Consensus       184 i~~~~~~i~~~~  195 (200)
                      +++++++|.+.+
T Consensus       157 ~~~l~~~l~~~~  168 (168)
T cd04163         157 VDELLEEIVKYL  168 (168)
T ss_pred             hHHHHHHHHhhC
Confidence            999999998753

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>cd01895 EngA2 EngA2 subfamily

Probab=99.87  E-value=8.3e-21  Score=133.40  Aligned_cols=155  Identities=20%  Similarity=0.194  Sum_probs=100.2

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHcCCCCCCCc-cccceeEEEEEEEecCCcEEEEEEEeCCChhhh----------h-hcc
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSK-VTVGASFLSQTIALQDSTTVKFEIWDTAGQERY----------A-ALA  100 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~----------~-~~~  100 (200)
                      .++|+++|++|+|||||+++|++........ +..........+... +  ..+.+||+||....          . ...
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~iiDtpG~~~~~~~~~~~e~~~~~~~   78 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYD-G--KKYTLIDTAGIRRKGKVEEGIEKYSVLRT   78 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEEC-C--eeEEEEECCCCccccchhccHHHHHHHHH
Confidence            5789999999999999999999865322111 111112212222222 2  35789999995322          1 011


Q ss_pred             cccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHH-HHHHc----CCeEEE
Q 028986          101 PLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIE-YAEKN----GMFFIE  175 (200)
Q Consensus       101 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~-~~~~~----~~~~~~  175 (200)
                      ...+..+|++++|+|++++.+.... .++..+..   .+.|+++++||+|+........+...+ +...+    ..++++
T Consensus        79 ~~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (174)
T cd01895          79 LKAIERADVVLLVIDATEGITEQDL-RIAGLILE---EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVF  154 (174)
T ss_pred             HHHHhhcCeEEEEEeCCCCcchhHH-HHHHHHHh---cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEE
Confidence            2345789999999999987665443 23333332   367899999999986653222222222 22222    368999


Q ss_pred             ecCCCCCCHHHHHHHHHHh
Q 028986          176 TSAKTADNINQLFEVLITC  194 (200)
Q Consensus       176 ~S~~~~~~i~~~~~~i~~~  194 (200)
                      +|++++.|+.++++++.+.
T Consensus       155 ~Sa~~~~~i~~~~~~l~~~  173 (174)
T cd01895         155 ISALTGQGVDKLFDAIDEV  173 (174)
T ss_pred             EeccCCCCHHHHHHHHHHh
Confidence            9999999999999998765

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>COG1159 Era GTPase [General function prediction only]

Probab=99.87  E-value=9.2e-21  Score=139.12  Aligned_cols=161  Identities=19%  Similarity=0.167  Sum_probs=113.5

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChh--------hhhhcccc
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE--------RYAALAPL  102 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~--------~~~~~~~~  102 (200)
                      .+.--|+|+|.|++|||||+|+|++.+....+....++......+...+  ..++.++||||..        .+......
T Consensus         4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~--~~QiIfvDTPGih~pk~~l~~~m~~~a~~   81 (298)
T COG1159           4 FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTD--NAQIIFVDTPGIHKPKHALGELMNKAARS   81 (298)
T ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcC--CceEEEEeCCCCCCcchHHHHHHHHHHHH
Confidence            4455799999999999999999999987666555444444444444333  3689999999932        23344555


Q ss_pred             cccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHH-c-CCeEEEecCCC
Q 028986          103 YYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEK-N-GMFFIETSAKT  180 (200)
Q Consensus       103 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~-~-~~~~~~~S~~~  180 (200)
                      .+..+|+++||+|+.....- .....++.++.   .+.|+++++||+|...+..... ...++... . ...++++||+.
T Consensus        82 sl~dvDlilfvvd~~~~~~~-~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~-~~~~~~~~~~~f~~ivpiSA~~  156 (298)
T COG1159          82 ALKDVDLILFVVDADEGWGP-GDEFILEQLKK---TKTPVILVVNKIDKVKPKTVLL-KLIAFLKKLLPFKEIVPISALK  156 (298)
T ss_pred             HhccCcEEEEEEeccccCCc-cHHHHHHHHhh---cCCCeEEEEEccccCCcHHHHH-HHHHHHHhhCCcceEEEeeccc
Confidence            67889999999999975222 22334444443   4678999999999877654222 22333322 2 23699999999


Q ss_pred             CCCHHHHHHHHHHhhccc
Q 028986          181 ADNINQLFEVLITCTSSY  198 (200)
Q Consensus       181 ~~~i~~~~~~i~~~~~~~  198 (200)
                      |.+++.+.+.+...+.+-
T Consensus       157 g~n~~~L~~~i~~~Lpeg  174 (298)
T COG1159         157 GDNVDTLLEIIKEYLPEG  174 (298)
T ss_pred             cCCHHHHHHHHHHhCCCC
Confidence            999999999999888763

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.86  E-value=6.3e-21  Score=135.13  Aligned_cols=150  Identities=20%  Similarity=0.182  Sum_probs=96.5

Q ss_pred             CCCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCCh----------hhhh
Q 028986           28 DAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ----------ERYA   97 (200)
Q Consensus        28 ~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~----------~~~~   97 (200)
                      -++...++|+|+|++|+|||||+++|++..+.....++.+.+......... .   .+.+||+||.          ..+.
T Consensus        13 ~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~---~~~liDtpG~~~~~~~~~~~~~~~   88 (179)
T TIGR03598        13 LPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVN-D---GFRLVDLPGYGYAKVSKEEKEKWQ   88 (179)
T ss_pred             CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeC-C---cEEEEeCCCCccccCChhHHHHHH
Confidence            344677899999999999999999999975333333333333322222222 1   5899999994          2333


Q ss_pred             hccccccc---CccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCc--CCHHHHHHHHHHcC--
Q 028986           98 ALAPLYYR---GAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKRE--VPAQDGIEYAEKNG--  170 (200)
Q Consensus        98 ~~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~--  170 (200)
                      .....+++   .+|++++|+|++++.+.... .++..+..   .+.|+++++||+|+....+  ...+++++.+...+  
T Consensus        89 ~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~  164 (179)
T TIGR03598        89 KLIEEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADD  164 (179)
T ss_pred             HHHHHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCC
Confidence            33344444   36899999999876444333 22333432   3688999999999864321  12334444444443  


Q ss_pred             CeEEEecCCCCCCHH
Q 028986          171 MFFIETSAKTADNIN  185 (200)
Q Consensus       171 ~~~~~~S~~~~~~i~  185 (200)
                      ..++++||++|+|++
T Consensus       165 ~~v~~~Sa~~g~gi~  179 (179)
T TIGR03598       165 PSVQLFSSLKKTGID  179 (179)
T ss_pred             CceEEEECCCCCCCC
Confidence            479999999999873

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.86  E-value=1.5e-20  Score=153.95  Aligned_cols=154  Identities=19%  Similarity=0.157  Sum_probs=111.3

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcCC---CCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRGQ---FDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA  110 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  110 (200)
                      +.|+++|+.++|||||+++|++..   ++.......+.+.....+...+   ..+.+||+||++.+...+...+.++|++
T Consensus         1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~---~~v~~iDtPGhe~f~~~~~~g~~~aD~a   77 (581)
T TIGR00475         1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD---YRLGFIDVPGHEKFISNAIAGGGGIDAA   77 (581)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC---EEEEEEECCCHHHHHHHHHhhhccCCEE
Confidence            468999999999999999999743   2222333344444444444433   6899999999999988888888999999


Q ss_pred             EEEEeCCC---HHhHHHHHHHHHHHHHcCCCCCe-EEEEEeCCCCCCCCcC--CHHHHHHHHHHc----CCeEEEecCCC
Q 028986          111 VVVYDITS---PDSFNKAQYWVKELQKHGSPDIV-MALVGNKADLHEKREV--PAQDGIEYAEKN----GMFFIETSAKT  180 (200)
Q Consensus       111 i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~p-~iiv~nK~D~~~~~~~--~~~~~~~~~~~~----~~~~~~~S~~~  180 (200)
                      ++|+|+++   +.+.+.+    ..+..   .++| +++|+||+|+......  ..+++.+++...    +++++++|+++
T Consensus        78 ILVVDa~~G~~~qT~ehl----~il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~t  150 (581)
T TIGR00475        78 LLVVDADEGVMTQTGEHL----AVLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKT  150 (581)
T ss_pred             EEEEECCCCCcHHHHHHH----HHHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCC
Confidence            99999997   3444333    22322   2566 9999999998654321  123444555443    57899999999


Q ss_pred             CCCHHHHHHHHHHhhcc
Q 028986          181 ADNINQLFEVLITCTSS  197 (200)
Q Consensus       181 ~~~i~~~~~~i~~~~~~  197 (200)
                      |.|+++++++|.+.+..
T Consensus       151 G~GI~eL~~~L~~l~~~  167 (581)
T TIGR00475       151 GQGIGELKKELKNLLES  167 (581)
T ss_pred             CCCchhHHHHHHHHHHh
Confidence            99999999998877654

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.86  E-value=3.6e-21  Score=137.37  Aligned_cols=158  Identities=20%  Similarity=0.194  Sum_probs=106.2

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHcCCCCCCC------------------ccccceeEEEEEEEecCCcEEEEEEEeCCCh
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTS------------------KVTVGASFLSQTIALQDSTTVKFEIWDTAGQ   93 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~   93 (200)
                      +..+|+++|+.++|||||+.+|.........                  ............+. .......+.++|+||+
T Consensus         2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~-~~~~~~~i~~iDtPG~   80 (188)
T PF00009_consen    2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFE-KNENNRKITLIDTPGH   80 (188)
T ss_dssp             TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEE-BTESSEEEEEEEESSS
T ss_pred             CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhccccccccccccc-ccccccceeecccccc
Confidence            4679999999999999999999864321110                  00111111122222 1233478999999999


Q ss_pred             hhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHH----HHHHHc
Q 028986           94 ERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGI----EYAEKN  169 (200)
Q Consensus        94 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~----~~~~~~  169 (200)
                      ..+.......+..+|++|+|+|+.+..... ....+..+...   ++|+++|+||+|+...+  ..+...    .+.+..
T Consensus        81 ~~f~~~~~~~~~~~D~ailvVda~~g~~~~-~~~~l~~~~~~---~~p~ivvlNK~D~~~~~--~~~~~~~~~~~l~~~~  154 (188)
T PF00009_consen   81 EDFIKEMIRGLRQADIAILVVDANDGIQPQ-TEEHLKILREL---GIPIIVVLNKMDLIEKE--LEEIIEEIKEKLLKEY  154 (188)
T ss_dssp             HHHHHHHHHHHTTSSEEEEEEETTTBSTHH-HHHHHHHHHHT---T-SEEEEEETCTSSHHH--HHHHHHHHHHHHHHHT
T ss_pred             cceeecccceecccccceeeeecccccccc-ccccccccccc---ccceEEeeeeccchhhh--HHHHHHHHHHHhcccc
Confidence            998888888899999999999999763222 23333444433   67799999999987221  111222    232222


Q ss_pred             ------CCeEEEecCCCCCCHHHHHHHHHHhhc
Q 028986          170 ------GMFFIETSAKTADNINQLFEVLITCTS  196 (200)
Q Consensus       170 ------~~~~~~~S~~~~~~i~~~~~~i~~~~~  196 (200)
                            .++++++|+.+|.|++++++.|.+.+.
T Consensus       155 ~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P  187 (188)
T PF00009_consen  155 GENGEEIVPVIPISALTGDGIDELLEALVELLP  187 (188)
T ss_dssp             TSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred             ccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence                  357999999999999999999998875

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=3.2e-21  Score=129.92  Aligned_cols=162  Identities=20%  Similarity=0.240  Sum_probs=123.3

Q ss_pred             CCceeeEEEEcCCCCcHHHHHHHHHcCCC-------CCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccc
Q 028986           30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQF-------DPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPL  102 (200)
Q Consensus        30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~  102 (200)
                      .+..+.|+|+|..++|||||+.++.....       +....++.+.......+.     ...+.+||..|++..+++|..
T Consensus        14 ~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~-----~~~l~fwdlgGQe~lrSlw~~   88 (197)
T KOG0076|consen   14 KKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVC-----NAPLSFWDLGGQESLRSLWKK   88 (197)
T ss_pred             hhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeec-----cceeEEEEcCChHHHHHHHHH
Confidence            35567899999999999999988865321       112234444444433333     257999999999999999999


Q ss_pred             cccCccEEEEEEeCCCHHhHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHH------HcCCeEEE
Q 028986          103 YYRGAAVAVVVYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAE------KNGMFFIE  175 (200)
Q Consensus       103 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~------~~~~~~~~  175 (200)
                      |+..++++|+++|+++++-++.....+..+... ...++|+++.+||.|+....+  .+++.....      +..+++.+
T Consensus        89 yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~--~~El~~~~~~~e~~~~rd~~~~p  166 (197)
T KOG0076|consen   89 YYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAME--AAELDGVFGLAELIPRRDNPFQP  166 (197)
T ss_pred             HHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhh--HHHHHHHhhhhhhcCCccCcccc
Confidence            999999999999999999898887766665443 367899999999999866433  333333222      23567999


Q ss_pred             ecCCCCCCHHHHHHHHHHhhccc
Q 028986          176 TSAKTADNINQLFEVLITCTSSY  198 (200)
Q Consensus       176 ~S~~~~~~i~~~~~~i~~~~~~~  198 (200)
                      +|+.+|+||.+...|+...+.+.
T Consensus       167 vSal~gegv~egi~w~v~~~~kn  189 (197)
T KOG0076|consen  167 VSALTGEGVKEGIEWLVKKLEKN  189 (197)
T ss_pred             chhhhcccHHHHHHHHHHHHhhc
Confidence            99999999999999999988765

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.85  E-value=4e-20  Score=153.23  Aligned_cols=158  Identities=16%  Similarity=0.198  Sum_probs=109.5

Q ss_pred             CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccce--eEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCc
Q 028986           30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGA--SFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGA  107 (200)
Q Consensus        30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~  107 (200)
                      .....+|+|+|+.++|||||+++|....+..........  ......+.. ++....+.+|||||++.+...+..++..+
T Consensus       241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~-~~~~~kItfiDTPGhe~F~~mr~rg~~~a  319 (742)
T CHL00189        241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEY-KDENQKIVFLDTPGHEAFSSMRSRGANVT  319 (742)
T ss_pred             cccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEe-cCCceEEEEEECCcHHHHHHHHHHHHHHC
Confidence            456679999999999999999999987654332222222  222222222 22347899999999999999999999999


Q ss_pred             cEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHH-------HHcC--CeEEEecC
Q 028986          108 AVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYA-------EKNG--MFFIETSA  178 (200)
Q Consensus       108 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~-------~~~~--~~~~~~S~  178 (200)
                      |++|+|+|+++......... +..+   ...++|+++++||+|+....   .+.+.+..       ..++  ++++++||
T Consensus       320 DiaILVVDA~dGv~~QT~E~-I~~~---k~~~iPiIVViNKiDl~~~~---~e~v~~eL~~~~ll~e~~g~~vpvv~VSA  392 (742)
T CHL00189        320 DIAILIIAADDGVKPQTIEA-INYI---QAANVPIIVAINKIDKANAN---TERIKQQLAKYNLIPEKWGGDTPMIPISA  392 (742)
T ss_pred             CEEEEEEECcCCCChhhHHH-HHHH---HhcCceEEEEEECCCccccC---HHHHHHHHHHhccchHhhCCCceEEEEEC
Confidence            99999999987422222111 1222   23478999999999986532   22222221       2233  68999999


Q ss_pred             CCCCCHHHHHHHHHHhh
Q 028986          179 KTADNINQLFEVLITCT  195 (200)
Q Consensus       179 ~~~~~i~~~~~~i~~~~  195 (200)
                      ++|.|+++++++|....
T Consensus       393 ktG~GIdeLle~I~~l~  409 (742)
T CHL00189        393 SQGTNIDKLLETILLLA  409 (742)
T ss_pred             CCCCCHHHHHHhhhhhh
Confidence            99999999999998754

>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]

Probab=99.85  E-value=3.3e-23  Score=140.95  Aligned_cols=167  Identities=28%  Similarity=0.521  Sum_probs=144.1

Q ss_pred             CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccE
Q 028986           30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAV  109 (200)
Q Consensus        30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~  109 (200)
                      .+.-++++|+|..|+|||+++.++....+..++..+++.++..+.....+...+++++||+.|++++..+..-|++.+++
T Consensus        22 r~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~  101 (229)
T KOG4423|consen   22 REHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHG  101 (229)
T ss_pred             hhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcc
Confidence            56788999999999999999999999888888888899888777777777777899999999999999999999999999


Q ss_pred             EEEEEeCCCHHhHHHHHHHHHHHHHc----CCCCCeEEEEEeCCCCCCCCcCC-HHHHHHHHHHcCC-eEEEecCCCCCC
Q 028986          110 AVVVYDITSPDSFNKAQYWVKELQKH----GSPDIVMALVGNKADLHEKREVP-AQDGIEYAEKNGM-FFIETSAKTADN  183 (200)
Q Consensus       110 ~i~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~p~iiv~nK~D~~~~~~~~-~~~~~~~~~~~~~-~~~~~S~~~~~~  183 (200)
                      .++|||++...+|+....|.+.+-..    ....+|+++..||+|+....... .....++++++++ .++++|+|.+.+
T Consensus       102 ~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenkn  181 (229)
T KOG4423|consen  102 AFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENKN  181 (229)
T ss_pred             eEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccccC
Confidence            99999999999999999999887432    24467899999999986653222 4667788888887 599999999999


Q ss_pred             HHHHHHHHHHhhc
Q 028986          184 INQLFEVLITCTS  196 (200)
Q Consensus       184 i~~~~~~i~~~~~  196 (200)
                      ++|+-..+++++.
T Consensus       182 i~Ea~r~lVe~~l  194 (229)
T KOG4423|consen  182 IPEAQRELVEKIL  194 (229)
T ss_pred             hhHHHHHHHHHHH
Confidence            9999999998764

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.85  E-value=1.8e-20  Score=153.62  Aligned_cols=146  Identities=23%  Similarity=0.236  Sum_probs=103.1

Q ss_pred             cCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhc------ccccc--cCccEEE
Q 028986           40 GDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAAL------APLYY--RGAAVAV  111 (200)
Q Consensus        40 G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~------~~~~~--~~~d~~i  111 (200)
                      |++|+|||||+|+|++........+..+.+.....+.+.+   .++++|||||+.++...      ...++  ..+|+++
T Consensus         1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~---~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI   77 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG---EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVV   77 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC---eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEE
Confidence            8999999999999999765333333333333333444432   46899999998765432      22232  3689999


Q ss_pred             EEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Q 028986          112 VVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVL  191 (200)
Q Consensus       112 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i  191 (200)
                      +|+|+++.+.   ...+...+.   ..++|+++|+||+|+.+.+.+. .+.+++.+..+++++++|+++|.|++++++++
T Consensus        78 ~VvDat~ler---~l~l~~ql~---~~~~PiIIVlNK~Dl~~~~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i  150 (591)
T TIGR00437        78 NVVDASNLER---NLYLTLQLL---ELGIPMILALNLVDEAEKKGIR-IDEEKLEERLGVPVVPTSATEGRGIERLKDAI  150 (591)
T ss_pred             EEecCCcchh---hHHHHHHHH---hcCCCEEEEEehhHHHHhCCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHHHH
Confidence            9999987432   122222332   3478999999999986554443 34577788889999999999999999999999


Q ss_pred             HHhh
Q 028986          192 ITCT  195 (200)
Q Consensus       192 ~~~~  195 (200)
                      .+..
T Consensus       151 ~~~~  154 (591)
T TIGR00437       151 RKAI  154 (591)
T ss_pred             HHHh
Confidence            8764

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.85  E-value=5.6e-20  Score=150.87  Aligned_cols=159  Identities=18%  Similarity=0.187  Sum_probs=110.8

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHcCC--CCC-----CC------ccccceeEEEE--EEEe--cCCcEEEEEEEeCCChhh
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVRGQ--FDP-----TS------KVTVGASFLSQ--TIAL--QDSTTVKFEIWDTAGQER   95 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~~~--~~~-----~~------~~~~~~~~~~~--~~~~--~~~~~~~~~l~D~~g~~~   95 (200)
                      .-+|+|+|+.++|||||+.+|+...  ...     ..      ....+.+....  .+.+  .++..+.+.+|||||+.+
T Consensus         7 iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~d   86 (600)
T PRK05433          7 IRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVD   86 (600)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHH
Confidence            3489999999999999999998632  110     00      01112222111  1222  245558899999999999


Q ss_pred             hhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCe---
Q 028986           96 YAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMF---  172 (200)
Q Consensus        96 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~---  172 (200)
                      +...+..++..+|++|+|+|++++........|....    ..++|+++|+||+|+.....  .....++...+++.   
T Consensus        87 F~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~----~~~lpiIvViNKiDl~~a~~--~~v~~ei~~~lg~~~~~  160 (600)
T PRK05433         87 FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL----ENDLEIIPVLNKIDLPAADP--ERVKQEIEDVIGIDASD  160 (600)
T ss_pred             HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH----HCCCCEEEEEECCCCCcccH--HHHHHHHHHHhCCCcce
Confidence            9988999999999999999999875555444444332    23678999999999854321  22233444445553   


Q ss_pred             EEEecCCCCCCHHHHHHHHHHhhcc
Q 028986          173 FIETSAKTADNINQLFEVLITCTSS  197 (200)
Q Consensus       173 ~~~~S~~~~~~i~~~~~~i~~~~~~  197 (200)
                      ++++||++|.|+++++++|.+.+..
T Consensus       161 vi~iSAktG~GI~~Ll~~I~~~lp~  185 (600)
T PRK05433        161 AVLVSAKTGIGIEEVLEAIVERIPP  185 (600)
T ss_pred             EEEEecCCCCCHHHHHHHHHHhCcc
Confidence            8999999999999999999987753

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.85  E-value=4.8e-20  Score=153.96  Aligned_cols=155  Identities=15%  Similarity=0.196  Sum_probs=108.2

Q ss_pred             CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccE
Q 028986           30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAV  109 (200)
Q Consensus        30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~  109 (200)
                      ......|+|+|+.++|||||+++|....+..........+.....+.+.+   ..+++|||||++.|...+...+..+|+
T Consensus       287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~---~~ItfiDTPGhe~F~~m~~rga~~aDi  363 (787)
T PRK05306        287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG---GKITFLDTPGHEAFTAMRARGAQVTDI  363 (787)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC---EEEEEEECCCCccchhHHHhhhhhCCE
Confidence            45677899999999999999999988665433322222223223333322   579999999999999888888999999


Q ss_pred             EEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHH-------HHHHcC--CeEEEecCCC
Q 028986          110 AVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIE-------YAEKNG--MFFIETSAKT  180 (200)
Q Consensus       110 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~-------~~~~~~--~~~~~~S~~~  180 (200)
                      +|+|+|+++...-+...    .+......++|+++++||+|+....   .+....       ++..++  ++++++||++
T Consensus       364 aILVVdAddGv~~qT~e----~i~~a~~~~vPiIVviNKiDl~~a~---~e~V~~eL~~~~~~~e~~g~~vp~vpvSAkt  436 (787)
T PRK05306        364 VVLVVAADDGVMPQTIE----AINHAKAAGVPIIVAINKIDKPGAN---PDRVKQELSEYGLVPEEWGGDTIFVPVSAKT  436 (787)
T ss_pred             EEEEEECCCCCCHhHHH----HHHHHHhcCCcEEEEEECccccccC---HHHHHHHHHHhcccHHHhCCCceEEEEeCCC
Confidence            99999998742111111    1222224478999999999985432   111111       122233  6899999999


Q ss_pred             CCCHHHHHHHHHHh
Q 028986          181 ADNINQLFEVLITC  194 (200)
Q Consensus       181 ~~~i~~~~~~i~~~  194 (200)
                      |.|+++++++|...
T Consensus       437 G~GI~eLle~I~~~  450 (787)
T PRK05306        437 GEGIDELLEAILLQ  450 (787)
T ss_pred             CCCchHHHHhhhhh
Confidence            99999999998753

>cd00880 Era_like Era (E

Probab=99.85  E-value=2.4e-20  Score=128.98  Aligned_cols=152  Identities=21%  Similarity=0.172  Sum_probs=101.3

Q ss_pred             EEcCCCCcHHHHHHHHHcCCCCC-CCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhh-------hcccccccCccE
Q 028986           38 LLGDSGVGKSCIVLRFVRGQFDP-TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYA-------ALAPLYYRGAAV  109 (200)
Q Consensus        38 i~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-------~~~~~~~~~~d~  109 (200)
                      |+|++|+|||||+++|++..... ...................  ...+.+||+||.....       .....++..+|+
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~   78 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP--LGPVVLIDTPGIDEAGGLGREREELARRVLERADL   78 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC--CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCE
Confidence            58999999999999999865442 1222222222222222211  2579999999965433       233447788999


Q ss_pred             EEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHH---HHHHHHHcCCeEEEecCCCCCCHHH
Q 028986          110 AVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQD---GIEYAEKNGMFFIETSAKTADNINQ  186 (200)
Q Consensus       110 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~---~~~~~~~~~~~~~~~S~~~~~~i~~  186 (200)
                      +++++|++......... +.....   ....|+++|+||+|+..........   ........+++++++|++++.|+.+
T Consensus        79 il~v~~~~~~~~~~~~~-~~~~~~---~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~  154 (163)
T cd00880          79 ILFVVDADLRADEEEEK-LLELLR---ERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDE  154 (163)
T ss_pred             EEEEEeCCCCCCHHHHH-HHHHHH---hcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHH
Confidence            99999999876555443 333332   4578899999999987654322211   1222233467899999999999999


Q ss_pred             HHHHHHHhh
Q 028986          187 LFEVLITCT  195 (200)
Q Consensus       187 ~~~~i~~~~  195 (200)
                      ++++|.+.+
T Consensus       155 l~~~l~~~~  163 (163)
T cd00880         155 LREALIEAL  163 (163)
T ss_pred             HHHHHHhhC
Confidence            999998753

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.85  E-value=9e-20  Score=145.72  Aligned_cols=151  Identities=21%  Similarity=0.180  Sum_probs=104.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCCC-CccccceeEEEEEEEecCCcEEEEEEEeCCCh--------hhhhhccccccc
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQFDPT-SKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ--------ERYAALAPLYYR  105 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~--------~~~~~~~~~~~~  105 (200)
                      +|+|+|.+|||||||+|+|++...... ..+....+.....+...+   ..+.+|||||.        +.+......+++
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~---~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~   77 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG---REFILIDTGGIEEDDDGLDKQIREQAEIAIE   77 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC---eEEEEEECCCCCCcchhHHHHHHHHHHHHHh
Confidence            589999999999999999998763221 112222233333333322   46999999995        344555667789


Q ss_pred             CccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCC-eEEEecCCCCCCH
Q 028986          106 GAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGM-FFIETSAKTADNI  184 (200)
Q Consensus       106 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~i  184 (200)
                      .+|++++|+|+.++.+... ..+...+++   .+.|+++|+||+|+......    ..+ +..++. .++++||+.|.|+
T Consensus        78 ~ad~vl~vvD~~~~~~~~d-~~i~~~l~~---~~~piilVvNK~D~~~~~~~----~~~-~~~lg~~~~~~vSa~~g~gv  148 (429)
T TIGR03594        78 EADVILFVVDGREGLTPED-EEIAKWLRK---SGKPVILVANKIDGKKEDAV----AAE-FYSLGFGEPIPISAEHGRGI  148 (429)
T ss_pred             hCCEEEEEEeCCCCCCHHH-HHHHHHHHH---hCCCEEEEEECccCCccccc----HHH-HHhcCCCCeEEEeCCcCCCh
Confidence            9999999999987533322 222333333   36789999999998654321    122 234566 7999999999999


Q ss_pred             HHHHHHHHHhhcc
Q 028986          185 NQLFEVLITCTSS  197 (200)
Q Consensus       185 ~~~~~~i~~~~~~  197 (200)
                      .++++++.+.+.+
T Consensus       149 ~~ll~~i~~~l~~  161 (429)
T TIGR03594       149 GDLLDAILELLPE  161 (429)
T ss_pred             HHHHHHHHHhcCc
Confidence            9999999988754

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.84  E-value=8.7e-20  Score=146.00  Aligned_cols=147  Identities=21%  Similarity=0.194  Sum_probs=100.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcCCCCC-CCccccceeEEEEEEEecCCcEEEEEEEeCCChhh--------hhhcccccc
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRGQFDP-TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQER--------YAALAPLYY  104 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--------~~~~~~~~~  104 (200)
                      ++|+|+|.+|||||||+|+|.+..... ...+..+.+.....+...+   ..+.+|||||...        +......++
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~---~~~~liDT~G~~~~~~~~~~~~~~~~~~~~   78 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG---REFILIDTGGIEPDDDGFEKQIREQAELAI   78 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC---cEEEEEECCCCCCcchhHHHHHHHHHHHHH
Confidence            479999999999999999999876421 1122222233333344432   6799999999765        233345567


Q ss_pred             cCccEEEEEEeCCCHHhHH--HHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCC-eEEEecCCCC
Q 028986          105 RGAAVAVVVYDITSPDSFN--KAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGM-FFIETSAKTA  181 (200)
Q Consensus       105 ~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~  181 (200)
                      ..+|++++|+|+.++.+..  .+..|+   ...   +.|+++|+||+|+...    .+...++ ..+++ .++++||++|
T Consensus        79 ~~ad~il~vvd~~~~~~~~~~~~~~~l---~~~---~~piilv~NK~D~~~~----~~~~~~~-~~lg~~~~~~iSa~~g  147 (435)
T PRK00093         79 EEADVILFVVDGRAGLTPADEEIAKIL---RKS---NKPVILVVNKVDGPDE----EADAYEF-YSLGLGEPYPISAEHG  147 (435)
T ss_pred             HhCCEEEEEEECCCCCCHHHHHHHHHH---HHc---CCcEEEEEECccCccc----hhhHHHH-HhcCCCCCEEEEeeCC
Confidence            8899999999998753332  223333   222   6899999999996432    1222333 34555 4899999999


Q ss_pred             CCHHHHHHHHHHh
Q 028986          182 DNINQLFEVLITC  194 (200)
Q Consensus       182 ~~i~~~~~~i~~~  194 (200)
                      .|+.+++++|.+.
T Consensus       148 ~gv~~l~~~I~~~  160 (435)
T PRK00093        148 RGIGDLLDAILEE  160 (435)
T ss_pred             CCHHHHHHHHHhh
Confidence            9999999999873

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.84  E-value=7.9e-20  Score=146.23  Aligned_cols=158  Identities=20%  Similarity=0.224  Sum_probs=103.7

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCC-ccccceeEEEEEEEecCCcEEEEEEEeCCChhh----------hhh-
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTS-KVTVGASFLSQTIALQDSTTVKFEIWDTAGQER----------YAA-   98 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----------~~~-   98 (200)
                      ...++|+|+|.+|+|||||+|+|++....... .+....+.....+.. ++  ..+.+|||||...          +.. 
T Consensus       171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~-~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~  247 (435)
T PRK00093        171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFER-DG--QKYTLIDTAGIRRKGKVTEGVEKYSVI  247 (435)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEE-CC--eeEEEEECCCCCCCcchhhHHHHHHHH
Confidence            45799999999999999999999986532221 121222222222222 22  4688999999422          111 


Q ss_pred             cccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHH-HHHHH----cCCeE
Q 028986           99 LAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGI-EYAEK----NGMFF  173 (200)
Q Consensus        99 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~-~~~~~----~~~~~  173 (200)
                      ....+++.+|++++|+|++++.+..... +...+.+   .+.|+++|+||+|+.....  .++.. .+...    ..+++
T Consensus       248 ~~~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~---~~~~~ivv~NK~Dl~~~~~--~~~~~~~~~~~l~~~~~~~i  321 (435)
T PRK00093        248 RTLKAIERADVVLLVIDATEGITEQDLR-IAGLALE---AGRALVIVVNKWDLVDEKT--MEEFKKELRRRLPFLDYAPI  321 (435)
T ss_pred             HHHHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCcEEEEEECccCCCHHH--HHHHHHHHHHhcccccCCCE
Confidence            1123578899999999999876555432 3333333   3678999999999863321  11222 12121    25689


Q ss_pred             EEecCCCCCCHHHHHHHHHHhhcc
Q 028986          174 IETSAKTADNINQLFEVLITCTSS  197 (200)
Q Consensus       174 ~~~S~~~~~~i~~~~~~i~~~~~~  197 (200)
                      +++||+++.|++++++.+.+.+.+
T Consensus       322 ~~~SA~~~~gv~~l~~~i~~~~~~  345 (435)
T PRK00093        322 VFISALTGQGVDKLLEAIDEAYEN  345 (435)
T ss_pred             EEEeCCCCCCHHHHHHHHHHHHHH
Confidence            999999999999999999887654

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.84  E-value=1.9e-19  Score=150.96  Aligned_cols=153  Identities=16%  Similarity=0.173  Sum_probs=109.7

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhc----------ccc
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAAL----------APL  102 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~----------~~~  102 (200)
                      .++|+++|++|||||||+|+|++.....  ....+.+...+...+. ....++++||+||..++...          ...
T Consensus         3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~v--gn~pGvTve~k~g~~~-~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~   79 (772)
T PRK09554          3 KLTIGLIGNPNSGKTTLFNQLTGARQRV--GNWAGVTVERKEGQFS-TTDHQVTLVDLPGTYSLTTISSQTSLDEQIACH   79 (772)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCCcc--CCCCCceEeeEEEEEE-cCceEEEEEECCCccccccccccccHHHHHHHH
Confidence            5689999999999999999999865422  2223444434433332 23368999999997654321          112


Q ss_pred             c--ccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCC
Q 028986          103 Y--YRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKT  180 (200)
Q Consensus       103 ~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~  180 (200)
                      +  ...+|++++|+|+++.+..   ..+...+.+   .++|+++++||+|+.+.+.. ....+++.+.++++++++|+++
T Consensus        80 ~l~~~~aD~vI~VvDat~ler~---l~l~~ql~e---~giPvIvVlNK~Dl~~~~~i-~id~~~L~~~LG~pVvpiSA~~  152 (772)
T PRK09554         80 YILSGDADLLINVVDASNLERN---LYLTLQLLE---LGIPCIVALNMLDIAEKQNI-RIDIDALSARLGCPVIPLVSTR  152 (772)
T ss_pred             HHhccCCCEEEEEecCCcchhh---HHHHHHHHH---cCCCEEEEEEchhhhhccCc-HHHHHHHHHHhCCCEEEEEeec
Confidence            2  2478999999999985432   234444443   36899999999998755444 3455777788999999999999


Q ss_pred             CCCHHHHHHHHHHhh
Q 028986          181 ADNINQLFEVLITCT  195 (200)
Q Consensus       181 ~~~i~~~~~~i~~~~  195 (200)
                      +.|++++++.+.+..
T Consensus       153 g~GIdeL~~~I~~~~  167 (772)
T PRK09554        153 GRGIEALKLAIDRHQ  167 (772)
T ss_pred             CCCHHHHHHHHHHhh
Confidence            999999999988764

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.83  E-value=1e-19  Score=131.18  Aligned_cols=118  Identities=17%  Similarity=0.268  Sum_probs=86.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCc-cEEEEE
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGA-AVAVVV  113 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~-d~~i~v  113 (200)
                      +|+++|+++||||||+++|....+.....++ ........... ......+.+||+||+.++...+..+++.+ +++|||
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~-~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~V   79 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNS-EGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFV   79 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeec-CCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEE
Confidence            6899999999999999999998765554433 22222111111 12236799999999999988888889998 999999


Q ss_pred             EeCCCH-HhHHHHHHHHHHHHH---cCCCCCeEEEEEeCCCCCCC
Q 028986          114 YDITSP-DSFNKAQYWVKELQK---HGSPDIVMALVGNKADLHEK  154 (200)
Q Consensus       114 ~d~~~~-~s~~~~~~~~~~i~~---~~~~~~p~iiv~nK~D~~~~  154 (200)
                      +|+.+. .++..+..|+..+..   ....++|+++++||+|+...
T Consensus        80 vD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a  124 (203)
T cd04105          80 VDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA  124 (203)
T ss_pred             EECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence            999987 677766555544322   22368999999999998643

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.83  E-value=3.1e-19  Score=149.90  Aligned_cols=158  Identities=20%  Similarity=0.196  Sum_probs=106.1

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHcCCCCC-CCccccceeEEEEEEEecCCcEEEEEEEeCCChh----------hhhhc-
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDP-TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE----------RYAAL-   99 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~----------~~~~~-   99 (200)
                      ..++|+++|.+|||||||+|+|++..... ...+..+.+.....+.+ ++.  .+.+|||||..          .+... 
T Consensus       449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~-~~~--~~~liDTaG~~~~~~~~~~~e~~~~~r  525 (712)
T PRK09518        449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEI-DGE--DWLFIDTAGIKRRQHKLTGAEYYSSLR  525 (712)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEE-CCC--EEEEEECCCcccCcccchhHHHHHHHH
Confidence            45799999999999999999999976421 11222223332333344 333  57799999942          12221 


Q ss_pred             ccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHH-Hc----CCeEE
Q 028986          100 APLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAE-KN----GMFFI  174 (200)
Q Consensus       100 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-~~----~~~~~  174 (200)
                      ....++.+|++++|+|++++.+..... ++..+..   .++|+++|+||+|+.....  .+...+... ..    .++++
T Consensus       526 ~~~~i~~advvilViDat~~~s~~~~~-i~~~~~~---~~~piIiV~NK~DL~~~~~--~~~~~~~~~~~l~~~~~~~ii  599 (712)
T PRK09518        526 TQAAIERSELALFLFDASQPISEQDLK-VMSMAVD---AGRALVLVFNKWDLMDEFR--RQRLERLWKTEFDRVTWARRV  599 (712)
T ss_pred             HHHHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEEchhcCChhH--HHHHHHHHHHhccCCCCCCEE
Confidence            123468899999999999887766654 3344433   3689999999999865322  122222222 11    34679


Q ss_pred             EecCCCCCCHHHHHHHHHHhhccc
Q 028986          175 ETSAKTADNINQLFEVLITCTSSY  198 (200)
Q Consensus       175 ~~S~~~~~~i~~~~~~i~~~~~~~  198 (200)
                      ++||++|.|++++++.+.+.+.++
T Consensus       600 ~iSAktg~gv~~L~~~i~~~~~~~  623 (712)
T PRK09518        600 NLSAKTGWHTNRLAPAMQEALESW  623 (712)
T ss_pred             EEECCCCCCHHHHHHHHHHHHHHh
Confidence            999999999999999999987653

>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.83  E-value=4.5e-20  Score=126.11  Aligned_cols=162  Identities=30%  Similarity=0.547  Sum_probs=139.6

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA  110 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  110 (200)
                      ...++++++|..|.|||+++++...+.|...+.++.+.......+....+ .+++..|||.|++.+..+...++-+..+.
T Consensus         8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g-~irf~~wdtagqEk~gglrdgyyI~~qcA   86 (216)
T KOG0096|consen    8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRG-QIRFNVWDTAGQEKKGGLRDGYYIQGQCA   86 (216)
T ss_pred             cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccC-cEEEEeeecccceeecccccccEEeccee
Confidence            45789999999999999999999999999999999999886665554444 59999999999999999999999889999


Q ss_pred             EEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Q 028986          111 VVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEV  190 (200)
Q Consensus       111 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~  190 (200)
                      |++||+..+.++.++..|...+.+.+. ++||++++||.|.....  .......+-+..++.++++|++.+.|...-|.|
T Consensus        87 iimFdVtsr~t~~n~~rwhrd~~rv~~-NiPiv~cGNKvDi~~r~--~k~k~v~~~rkknl~y~~iSaksn~NfekPFl~  163 (216)
T KOG0096|consen   87 IIMFDVTSRFTYKNVPRWHRDLVRVRE-NIPIVLCGNKVDIKARK--VKAKPVSFHRKKNLQYYEISAKSNYNFERPFLW  163 (216)
T ss_pred             EEEeeeeehhhhhcchHHHHHHHHHhc-CCCeeeeccceeccccc--cccccceeeecccceeEEeecccccccccchHH
Confidence            999999999999999999999888754 59999999999975543  123334555667889999999999999999999


Q ss_pred             HHHhhc
Q 028986          191 LITCTS  196 (200)
Q Consensus       191 i~~~~~  196 (200)
                      +.+++.
T Consensus       164 LarKl~  169 (216)
T KOG0096|consen  164 LARKLT  169 (216)
T ss_pred             Hhhhhc
Confidence            998764

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.83  E-value=9.1e-19  Score=128.68  Aligned_cols=152  Identities=19%  Similarity=0.165  Sum_probs=99.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhh-------hcccccccCc
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYA-------ALAPLYYRGA  107 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-------~~~~~~~~~~  107 (200)
                      +|+++|++|+|||||+++|.+........+....+.....+.+.+   ..+++||+||..+..       .....+++++
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~---~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~a   78 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG---AKIQLLDLPGIIEGAADGKGRGRQVIAVARTA   78 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC---eEEEEEECCCcccccccchhHHHHHHHhhccC
Confidence            689999999999999999998653221111112222233333322   579999999964321       2233468899


Q ss_pred             cEEEEEEeCCCHH-hHHHHHHHHHH-----------------------------------------HHH-----------
Q 028986          108 AVAVVVYDITSPD-SFNKAQYWVKE-----------------------------------------LQK-----------  134 (200)
Q Consensus       108 d~~i~v~d~~~~~-s~~~~~~~~~~-----------------------------------------i~~-----------  134 (200)
                      |++++|+|++++. ..+.+..++..                                         +.+           
T Consensus        79 d~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~  158 (233)
T cd01896          79 DLILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIR  158 (233)
T ss_pred             CEEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEc
Confidence            9999999998764 33333333321                                         000           


Q ss_pred             -------------cCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHhhc
Q 028986          135 -------------HGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLITCTS  196 (200)
Q Consensus       135 -------------~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~~~  196 (200)
                                   .....+|+++|+||+|+..     .++...++..  ..++++|++++.|++++|+.|.+.+.
T Consensus       159 ~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~-----~~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~~~L~  226 (233)
T cd01896         159 EDITVDDLIDVIEGNRVYIPCLYVYNKIDLIS-----IEELDLLARQ--PNSVVISAEKGLNLDELKERIWDKLG  226 (233)
T ss_pred             cCCCHHHHHHHHhCCceEeeEEEEEECccCCC-----HHHHHHHhcC--CCEEEEcCCCCCCHHHHHHHHHHHhC
Confidence                         1123478999999999853     3444445443  35899999999999999999988763

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=99.82  E-value=4.6e-20  Score=120.27  Aligned_cols=159  Identities=18%  Similarity=0.257  Sum_probs=118.3

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA  110 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  110 (200)
                      .++++|+++|-.++|||||+..|.+.+. .+..++.+  +..+.+.+ ++. +++.+||.+|+...+..|..|+.+.|++
T Consensus        15 ~rEirilllGldnAGKTT~LKqL~sED~-~hltpT~G--Fn~k~v~~-~g~-f~LnvwDiGGqr~IRpyWsNYyenvd~l   89 (185)
T KOG0074|consen   15 RREIRILLLGLDNAGKTTFLKQLKSEDP-RHLTPTNG--FNTKKVEY-DGT-FHLNVWDIGGQRGIRPYWSNYYENVDGL   89 (185)
T ss_pred             cceEEEEEEecCCCcchhHHHHHccCCh-hhccccCC--cceEEEee-cCc-EEEEEEecCCccccchhhhhhhhccceE
Confidence            6789999999999999999999998643 23333444  44445554 333 7999999999999999999999999999


Q ss_pred             EEEEeCCCHHhHHHHHHHHHH-HHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHH-----HHHHcCCeEEEecCCCCCCH
Q 028986          111 VVVYDITSPDSFNKAQYWVKE-LQKHGSPDIVMALVGNKADLHEKREVPAQDGIE-----YAEKNGMFFIETSAKTADNI  184 (200)
Q Consensus       111 i~v~d~~~~~s~~~~~~~~~~-i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~-----~~~~~~~~~~~~S~~~~~~i  184 (200)
                      |||+|..+..-|+.+...+-. +...+...+|+++..||.|+.....  .+++..     ..+...+.+-+||+..++++
T Consensus        90 IyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~--~eeia~klnl~~lrdRswhIq~csals~eg~  167 (185)
T KOG0074|consen   90 IYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAK--VEEIALKLNLAGLRDRSWHIQECSALSLEGS  167 (185)
T ss_pred             EEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcc--hHHHHHhcchhhhhhceEEeeeCccccccCc
Confidence            999998888778877554444 4444466799999999999865422  111111     11122345789999999999


Q ss_pred             HHHHHHHHHhhc
Q 028986          185 NQLFEVLITCTS  196 (200)
Q Consensus       185 ~~~~~~i~~~~~  196 (200)
                      .+-.+|++....
T Consensus       168 ~dg~~wv~sn~~  179 (185)
T KOG0074|consen  168 TDGSDWVQSNPE  179 (185)
T ss_pred             cCcchhhhcCCC
Confidence            998888876544

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.82  E-value=1.1e-20  Score=123.41  Aligned_cols=161  Identities=22%  Similarity=0.331  Sum_probs=119.5

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEE
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAV  111 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i  111 (200)
                      .+.+|+++|--|+||++++.++.-.+...+ .|+++...  ..+.+   ++.++++||..|+-..+..|..|+.+.|++|
T Consensus        17 ~e~rililgldGaGkttIlyrlqvgevvtt-kPtigfnv--e~v~y---KNLk~~vwdLggqtSirPyWRcYy~dt~avI   90 (182)
T KOG0072|consen   17 REMRILILGLDGAGKTTILYRLQVGEVVTT-KPTIGFNV--ETVPY---KNLKFQVWDLGGQTSIRPYWRCYYADTDAVI   90 (182)
T ss_pred             cceEEEEeeccCCCeeEEEEEcccCccccc-CCCCCcCc--ccccc---ccccceeeEccCcccccHHHHHHhcccceEE
Confidence            678999999999999999988877665433 23344332  33333   3378999999999999999999999999999


Q ss_pred             EEEeCCCHHhHHHH-HHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCC---HHHHHHHHHHcCCeEEEecCCCCCCHHHH
Q 028986          112 VVYDITSPDSFNKA-QYWVKELQKHGSPDIVMALVGNKADLHEKREVP---AQDGIEYAEKNGMFFIETSAKTADNINQL  187 (200)
Q Consensus       112 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~---~~~~~~~~~~~~~~~~~~S~~~~~~i~~~  187 (200)
                      ||+|.++++..... ..++..+.+.......+++++||.|........   ........+..-+.++++||..|+|++..
T Consensus        91 yVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~  170 (182)
T KOG0072|consen   91 YVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPA  170 (182)
T ss_pred             EEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccCCcHH
Confidence            99999998766555 444555555444557789999999986542211   11111222233467999999999999999


Q ss_pred             HHHHHHhhccc
Q 028986          188 FEVLITCTSSY  198 (200)
Q Consensus       188 ~~~i~~~~~~~  198 (200)
                      ++||.+.++++
T Consensus       171 ~DWL~~~l~~~  181 (182)
T KOG0072|consen  171 MDWLQRPLKSR  181 (182)
T ss_pred             HHHHHHHHhcc
Confidence            99999998875

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.82  E-value=9.5e-19  Score=146.97  Aligned_cols=155  Identities=21%  Similarity=0.178  Sum_probs=101.9

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCC-ccccceeEEEEEEEecCCcEEEEEEEeCCChhh--------hhhccc
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTS-KVTVGASFLSQTIALQDSTTVKFEIWDTAGQER--------YAALAP  101 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--------~~~~~~  101 (200)
                      ....+|+|+|.+++|||||+|+|++....... .+..+.+.........   ...+.+|||||.+.        +.....
T Consensus       273 ~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~---~~~~~liDT~G~~~~~~~~~~~~~~~~~  349 (712)
T PRK09518        273 KAVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWA---GTDFKLVDTGGWEADVEGIDSAIASQAQ  349 (712)
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEEC---CEEEEEEeCCCcCCCCccHHHHHHHHHH
Confidence            34568999999999999999999986542211 1222222222222221   25789999999642        334445


Q ss_pred             ccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCC-eEEEecCCC
Q 028986          102 LYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGM-FFIETSAKT  180 (200)
Q Consensus       102 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~  180 (200)
                      .++..+|++++|+|+++..+.. -..|...+..   .+.|+++|+||+|+....    .....+.. .+. ..+++||++
T Consensus       350 ~~~~~aD~iL~VvDa~~~~~~~-d~~i~~~Lr~---~~~pvIlV~NK~D~~~~~----~~~~~~~~-lg~~~~~~iSA~~  420 (712)
T PRK09518        350 IAVSLADAVVFVVDGQVGLTST-DERIVRMLRR---AGKPVVLAVNKIDDQASE----YDAAEFWK-LGLGEPYPISAMH  420 (712)
T ss_pred             HHHHhCCEEEEEEECCCCCCHH-HHHHHHHHHh---cCCCEEEEEECcccccch----hhHHHHHH-cCCCCeEEEECCC
Confidence            5688999999999998642211 1234444543   478999999999985431    12222222 222 357999999


Q ss_pred             CCCHHHHHHHHHHhhcc
Q 028986          181 ADNINQLFEVLITCTSS  197 (200)
Q Consensus       181 ~~~i~~~~~~i~~~~~~  197 (200)
                      |.|+.+++++|++.+.+
T Consensus       421 g~GI~eLl~~i~~~l~~  437 (712)
T PRK09518        421 GRGVGDLLDEALDSLKV  437 (712)
T ss_pred             CCCchHHHHHHHHhccc
Confidence            99999999999988754

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.82  E-value=6.5e-20  Score=144.41  Aligned_cols=164  Identities=21%  Similarity=0.289  Sum_probs=126.0

Q ss_pred             CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCcc
Q 028986           29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAA  108 (200)
Q Consensus        29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d  108 (200)
                      .....+||+++|+.|+||||||.+|...++.+..++.......+..+.. + . +...++|++..++........++.+|
T Consensus         5 ~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtP-e-~-vpt~ivD~ss~~~~~~~l~~EirkA~   81 (625)
T KOG1707|consen    5 ETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTP-E-N-VPTSIVDTSSDSDDRLCLRKEIRKAD   81 (625)
T ss_pred             cCccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCc-C-c-CceEEEecccccchhHHHHHHHhhcC
Confidence            4467889999999999999999999999987776655444443322222 1 1 56899999877666666677889999


Q ss_pred             EEEEEEeCCCHHhHHHH-HHHHHHHHHcC--CCCCeEEEEEeCCCCCCCCcCCHHH-HHHHHHHcCC--eEEEecCCCCC
Q 028986          109 VAVVVYDITSPDSFNKA-QYWVKELQKHG--SPDIVMALVGNKADLHEKREVPAQD-GIEYAEKNGM--FFIETSAKTAD  182 (200)
Q Consensus       109 ~~i~v~d~~~~~s~~~~-~~~~~~i~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~-~~~~~~~~~~--~~~~~S~~~~~  182 (200)
                      +++++|+.+++.+++.+ .+|+..+++..  ..++|+|+|+||.|.......+.+. ...+..++.-  ..++|||++-.
T Consensus        82 vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~  161 (625)
T KOG1707|consen   82 VICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLA  161 (625)
T ss_pred             EEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhh
Confidence            99999999999999988 88999998875  3679999999999997654443333 3344443322  37999999999


Q ss_pred             CHHHHHHHHHHhh
Q 028986          183 NINQLFEVLITCT  195 (200)
Q Consensus       183 ~i~~~~~~i~~~~  195 (200)
                      ++.++|....+.+
T Consensus       162 n~~e~fYyaqKaV  174 (625)
T KOG1707|consen  162 NVSELFYYAQKAV  174 (625)
T ss_pred             hhHhhhhhhhhee
Confidence            9999998876654

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.82  E-value=3.5e-19  Score=141.90  Aligned_cols=152  Identities=17%  Similarity=0.120  Sum_probs=99.7

Q ss_pred             CCceeeEEEEcCCCCcHHHHHHHHHcCC--CCC-----------------------------CCccccceeEEEEEEEec
Q 028986           30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQ--FDP-----------------------------TSKVTVGASFLSQTIALQ   78 (200)
Q Consensus        30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~--~~~-----------------------------~~~~~~~~~~~~~~~~~~   78 (200)
                      ++..++|+++|+.++|||||+.+|+...  ...                             ......+.+.....  +.
T Consensus         4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~--~~   81 (426)
T TIGR00483         4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWK--FE   81 (426)
T ss_pred             CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEE--Ec
Confidence            4667899999999999999999998621  110                             00111222222222  22


Q ss_pred             CCcEEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHHhHHHH--HHHHHHHHHcCCCCCeEEEEEeCCCCCCCCc
Q 028986           79 DSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKA--QYWVKELQKHGSPDIVMALVGNKADLHEKRE  156 (200)
Q Consensus        79 ~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~--~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~  156 (200)
                      . ..+.+.+||+||++++.......+..+|++++|+|++++++....  ..++......  ...|+++++||+|+....+
T Consensus        82 ~-~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~--~~~~iIVviNK~Dl~~~~~  158 (426)
T TIGR00483        82 T-DKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTL--GINQLIVAINKMDSVNYDE  158 (426)
T ss_pred             c-CCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHc--CCCeEEEEEEChhccCccH
Confidence            2 236899999999998877666678899999999999987533111  1112222222  2357999999999864221


Q ss_pred             ----CCHHHHHHHHHHcC-----CeEEEecCCCCCCHHH
Q 028986          157 ----VPAQDGIEYAEKNG-----MFFIETSAKTADNINQ  186 (200)
Q Consensus       157 ----~~~~~~~~~~~~~~-----~~~~~~S~~~~~~i~~  186 (200)
                          ...+++.++++..+     ++++++||++|.|+.+
T Consensus       159 ~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~  197 (426)
T TIGR00483       159 EEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK  197 (426)
T ss_pred             HHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence                11244555666554     5799999999999986

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.82  E-value=3.1e-19  Score=141.08  Aligned_cols=164  Identities=18%  Similarity=0.179  Sum_probs=105.7

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCc-----cccceeEEEEE------------EEec---CC------cEEE
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSK-----VTVGASFLSQT------------IALQ---DS------TTVK   84 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~-----~~~~~~~~~~~------------~~~~---~~------~~~~   84 (200)
                      +..++|+++|+.++|||||+++|.+...+....     .+....+....            ....   +.      ....
T Consensus         2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (406)
T TIGR03680         2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR   81 (406)
T ss_pred             CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence            467899999999999999999997642211100     11111110000            0000   00      1357


Q ss_pred             EEEEeCCChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcC--CHHHH
Q 028986           85 FEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREV--PAQDG  162 (200)
Q Consensus        85 ~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~--~~~~~  162 (200)
                      +.+||+||++++...+......+|++++|+|++++.........+..+....  ..|+++++||+|+......  ..+++
T Consensus        82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~g--i~~iIVvvNK~Dl~~~~~~~~~~~~i  159 (406)
T TIGR03680        82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIG--IKNIVIVQNKIDLVSKEKALENYEEI  159 (406)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcC--CCeEEEEEEccccCCHHHHHHHHHHH
Confidence            9999999999998888888888999999999996431112222233333221  2468999999998653221  12333


Q ss_pred             HHHHHHc---CCeEEEecCCCCCCHHHHHHHHHHhhc
Q 028986          163 IEYAEKN---GMFFIETSAKTADNINQLFEVLITCTS  196 (200)
Q Consensus       163 ~~~~~~~---~~~~~~~S~~~~~~i~~~~~~i~~~~~  196 (200)
                      .++....   +++++++|++++.|+++++++|...+.
T Consensus       160 ~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~  196 (406)
T TIGR03680       160 KEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP  196 (406)
T ss_pred             HhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence            4444332   578999999999999999999988654

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.82  E-value=6.2e-19  Score=143.86  Aligned_cols=156  Identities=19%  Similarity=0.207  Sum_probs=102.1

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcCCCCCCCc----cccceeEEEEEEEec---C---C-----cEEEEEEEeCCChhhhhh
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSK----VTVGASFLSQTIALQ---D---S-----TTVKFEIWDTAGQERYAA   98 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~----~~~~~~~~~~~~~~~---~---~-----~~~~~~l~D~~g~~~~~~   98 (200)
                      .-|+|+|++++|||||+++|.+..+.....    .+.+..+........   .   .     ....+.+|||||++.+..
T Consensus         5 piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~   84 (590)
T TIGR00491         5 PIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTN   84 (590)
T ss_pred             CEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHH
Confidence            459999999999999999999876543221    122222211111000   0   0     002388999999999999


Q ss_pred             cccccccCccEEEEEEeCCC---HHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcC------------CHHH--
Q 028986           99 LAPLYYRGAAVAVVVYDITS---PDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREV------------PAQD--  161 (200)
Q Consensus        99 ~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~------------~~~~--  161 (200)
                      ++..++..+|++++|+|+++   +.+++.+.    .+.   ..++|+++++||+|+......            ....  
T Consensus        85 l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~----~l~---~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~  157 (590)
T TIGR00491        85 LRKRGGALADLAILIVDINEGFKPQTQEALN----ILR---MYKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQ  157 (590)
T ss_pred             HHHHHHhhCCEEEEEEECCcCCCHhHHHHHH----HHH---HcCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHH
Confidence            88889999999999999987   44444332    222   236789999999998642100            0000  


Q ss_pred             ----------HHHHHH------------Hc--CCeEEEecCCCCCCHHHHHHHHHHhhc
Q 028986          162 ----------GIEYAE------------KN--GMFFIETSAKTADNINQLFEVLITCTS  196 (200)
Q Consensus       162 ----------~~~~~~------------~~--~~~~~~~S~~~~~~i~~~~~~i~~~~~  196 (200)
                                ..++.+            .+  .++++++||++|+|+++++.+|....+
T Consensus       158 ~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~  216 (590)
T TIGR00491       158 QNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQ  216 (590)
T ss_pred             HHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHH
Confidence                      001111            11  358999999999999999999876443

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.81  E-value=1.2e-18  Score=134.68  Aligned_cols=161  Identities=22%  Similarity=0.197  Sum_probs=110.0

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhh-----------cc
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAA-----------LA  100 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-----------~~  100 (200)
                      ..++|+|+|.|++|||||+|+|++.+..-.+. ..+++.......+.... ..+.++||.|......           ..
T Consensus       177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~-~aGTTRD~I~~~~e~~~-~~~~liDTAGiRrk~ki~e~~E~~Sv~rt  254 (444)
T COG1160         177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSD-IAGTTRDSIDIEFERDG-RKYVLIDTAGIRRKGKITESVEKYSVART  254 (444)
T ss_pred             CceEEEEEeCCCCCchHHHHHhccCceEEecC-CCCccccceeeeEEECC-eEEEEEECCCCCcccccccceEEEeehhh
Confidence            57999999999999999999999987544333 22333223332222111 4789999999432221           12


Q ss_pred             cccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHH-----cCCeEEE
Q 028986          101 PLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEK-----NGMFFIE  175 (200)
Q Consensus       101 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~  175 (200)
                      ...+..+|++++|+|++.+.+-+.. .....+.+   .+.++++|+||+|+.+..+...++.++....     ..++++.
T Consensus       255 ~~aI~~a~vvllviDa~~~~~~qD~-~ia~~i~~---~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~  330 (444)
T COG1160         255 LKAIERADVVLLVIDATEGISEQDL-RIAGLIEE---AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVF  330 (444)
T ss_pred             HhHHhhcCEEEEEEECCCCchHHHH-HHHHHHHH---cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEE
Confidence            2346779999999999998544443 23344443   3677999999999977644444444433332     1457999


Q ss_pred             ecCCCCCCHHHHHHHHHHhhccc
Q 028986          176 TSAKTADNINQLFEVLITCTSSY  198 (200)
Q Consensus       176 ~S~~~~~~i~~~~~~i~~~~~~~  198 (200)
                      +||+++.+++++|+.+.+.+...
T Consensus       331 iSA~~~~~i~~l~~~i~~~~~~~  353 (444)
T COG1160         331 ISALTGQGLDKLFEAIKEIYECA  353 (444)
T ss_pred             EEecCCCChHHHHHHHHHHHHHh
Confidence            99999999999999999887654

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.81  E-value=9.8e-19  Score=122.23  Aligned_cols=151  Identities=21%  Similarity=0.239  Sum_probs=96.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCCh----------hhhhhcccccc
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ----------ERYAALAPLYY  104 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~----------~~~~~~~~~~~  104 (200)
                      .|+++|++|+|||||++.+.+..+.+...++.+.+..........    .+.+||+||.          +.+......++
T Consensus         1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~----~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~   76 (170)
T cd01876           1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND----KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYL   76 (170)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC----eEEEecCCCccccccCHHHHHHHHHHHHHHH
Confidence            489999999999999999996554444444444333332222221    7899999993          22333333344


Q ss_pred             c---CccEEEEEEeCCCHHhH--HHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCC--HHHHHHHHH--HcCCeEEE
Q 028986          105 R---GAAVAVVVYDITSPDSF--NKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVP--AQDGIEYAE--KNGMFFIE  175 (200)
Q Consensus       105 ~---~~d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~--~~~~~~~~  175 (200)
                      .   +.+++++++|.....+.  ..+..|+.   ..   +.|+++|+||+|+....+..  ........+  ....++++
T Consensus        77 ~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~---~~---~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  150 (170)
T cd01876          77 ENRENLKGVVLLIDSRHGPTEIDLEMLDWLE---EL---GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIIL  150 (170)
T ss_pred             HhChhhhEEEEEEEcCcCCCHhHHHHHHHHH---Hc---CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEE
Confidence            3   46789999998865322  22333332   22   47899999999985432211  112222222  23457999


Q ss_pred             ecCCCCCCHHHHHHHHHHhh
Q 028986          176 TSAKTADNINQLFEVLITCT  195 (200)
Q Consensus       176 ~S~~~~~~i~~~~~~i~~~~  195 (200)
                      +|++++.++.+++++|.+.+
T Consensus       151 ~Sa~~~~~~~~l~~~l~~~~  170 (170)
T cd01876         151 FSSLKGQGIDELRALIEKWL  170 (170)
T ss_pred             EecCCCCCHHHHHHHHHHhC
Confidence            99999999999999998753

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.81  E-value=5.6e-19  Score=140.74  Aligned_cols=155  Identities=18%  Similarity=0.134  Sum_probs=97.8

Q ss_pred             CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCC-----------------------------ccccceeEEEEEEEecCC
Q 028986           30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTS-----------------------------KVTVGASFLSQTIALQDS   80 (200)
Q Consensus        30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~   80 (200)
                      ++..++|+++|++++|||||+++|+........                             ....+.+.......+.. 
T Consensus         3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~-   81 (425)
T PRK12317          3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFET-   81 (425)
T ss_pred             CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEec-
Confidence            466799999999999999999999853211000                             00112222122222222 


Q ss_pred             cEEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHHhH-HHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCc---
Q 028986           81 TTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLHEKRE---  156 (200)
Q Consensus        81 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~---  156 (200)
                      ..+++.+|||||++.+.......+..+|++++|+|+++.... .....++..+...  ...|+++++||+|+.....   
T Consensus        82 ~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~--~~~~iivviNK~Dl~~~~~~~~  159 (425)
T PRK12317         82 DKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL--GINQLIVAINKMDAVNYDEKRY  159 (425)
T ss_pred             CCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc--CCCeEEEEEEccccccccHHHH
Confidence            236899999999988776555667889999999999873112 1112222223322  1246899999999865221   


Q ss_pred             -CCHHHHHHHHHHcC-----CeEEEecCCCCCCHHHH
Q 028986          157 -VPAQDGIEYAEKNG-----MFFIETSAKTADNINQL  187 (200)
Q Consensus       157 -~~~~~~~~~~~~~~-----~~~~~~S~~~~~~i~~~  187 (200)
                       ...+++.+++...+     ++++++|+++|.|+.+.
T Consensus       160 ~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~  196 (425)
T PRK12317        160 EEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKK  196 (425)
T ss_pred             HHHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccc
Confidence             11234445555444     57999999999999863

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.81  E-value=1e-18  Score=138.17  Aligned_cols=166  Identities=19%  Similarity=0.161  Sum_probs=104.5

Q ss_pred             CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCC-----ccccceeEEEEEE----------------EecC-----CcE
Q 028986           29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTS-----KVTVGASFLSQTI----------------ALQD-----STT   82 (200)
Q Consensus        29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~-----~~~~~~~~~~~~~----------------~~~~-----~~~   82 (200)
                      ..+..++|+++|+.++|||||+.+|.+...+...     ..+....+.....                ....     ...
T Consensus         5 ~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (411)
T PRK04000          5 KVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELL   84 (411)
T ss_pred             cCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccc
Confidence            4567799999999999999999999663211111     1111111100000                0000     112


Q ss_pred             EEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHH-hHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcC--CH
Q 028986           83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPD-SFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREV--PA  159 (200)
Q Consensus        83 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~--~~  159 (200)
                      ..+.+||+||++++..........+|++++|+|++++. ..+... .+..+...  ...|+++|+||+|+......  ..
T Consensus        85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~-~l~~l~~~--~i~~iiVVlNK~Dl~~~~~~~~~~  161 (411)
T PRK04000         85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKE-HLMALDII--GIKNIVIVQNKIDLVSKERALENY  161 (411)
T ss_pred             cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHH-HHHHHHHc--CCCcEEEEEEeeccccchhHHHHH
Confidence            57899999999988776666667789999999999642 111111 22222222  12368999999998654321  12


Q ss_pred             HHHHHHHHHc---CCeEEEecCCCCCCHHHHHHHHHHhhcc
Q 028986          160 QDGIEYAEKN---GMFFIETSAKTADNINQLFEVLITCTSS  197 (200)
Q Consensus       160 ~~~~~~~~~~---~~~~~~~S~~~~~~i~~~~~~i~~~~~~  197 (200)
                      +++..++...   +.+++++|++++.|+++++++|.+.+.+
T Consensus       162 ~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~  202 (411)
T PRK04000        162 EQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPT  202 (411)
T ss_pred             HHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence            3334444332   5689999999999999999999987653

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.81  E-value=1.1e-18  Score=142.79  Aligned_cols=158  Identities=15%  Similarity=0.237  Sum_probs=109.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC--CCCCCC------------ccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcc
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG--QFDPTS------------KVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALA  100 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~  100 (200)
                      +|+|+|+.++|||||+++|+..  .+....            ....+.+.......+... .+++.+|||||+.++...+
T Consensus         3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~-~~kinlIDTPGh~DF~~ev   81 (594)
T TIGR01394         3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYN-GTKINIVDTPGHADFGGEV   81 (594)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEEC-CEEEEEEECCCHHHHHHHH
Confidence            7999999999999999999863  221111            011122332222222222 2789999999999999888


Q ss_pred             cccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcC-CHHHHHHHHH-------HcCCe
Q 028986          101 PLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREV-PAQDGIEYAE-------KNGMF  172 (200)
Q Consensus       101 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~-~~~~~~~~~~-------~~~~~  172 (200)
                      ..+++.+|++++|+|+.+.. ......|+..+...   ++|+++|+||+|+...+.. ..+++..+..       ...++
T Consensus        82 ~~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~~---~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~p  157 (594)
T TIGR01394        82 ERVLGMVDGVLLLVDASEGP-MPQTRFVLKKALEL---GLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFP  157 (594)
T ss_pred             HHHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHHC---CCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCc
Confidence            99999999999999998642 33445566655543   6789999999998643221 1223333332       23568


Q ss_pred             EEEecCCCCC----------CHHHHHHHHHHhhcc
Q 028986          173 FIETSAKTAD----------NINQLFEVLITCTSS  197 (200)
Q Consensus       173 ~~~~S~~~~~----------~i~~~~~~i~~~~~~  197 (200)
                      ++++|++.|.          ++..+|+.|++.+..
T Consensus       158 vl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~  192 (594)
T TIGR01394       158 IVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPA  192 (594)
T ss_pred             EEechhhcCcccccCcccccCHHHHHHHHHHhCCC
Confidence            9999999996          799999999987753

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.81  E-value=7.9e-19  Score=117.31  Aligned_cols=135  Identities=22%  Similarity=0.289  Sum_probs=96.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCCh----hhhhhcccccccCccEE
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ----ERYAALAPLYYRGAAVA  110 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~----~~~~~~~~~~~~~~d~~  110 (200)
                      ||+++|+.|||||||+++|.+...  .+..|....+.             =.++||||.    +.+.........++|.+
T Consensus         3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~~~-------------~~~IDTPGEyiE~~~~y~aLi~ta~dad~V   67 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIEYY-------------DNTIDTPGEYIENPRFYHALIVTAQDADVV   67 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCCC--CcCccceeEec-------------ccEEECChhheeCHHHHHHHHHHHhhCCEE
Confidence            799999999999999999999654  23333333331             134999994    33444444555689999


Q ss_pred             EEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHH
Q 028986          111 VVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGM-FFIETSAKTADNINQLFE  189 (200)
Q Consensus       111 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~i~~~~~  189 (200)
                      +++.|++++.+...-. +.      .....|+|-|+||+|+..+ ....+.++++.+..|+ .+|++|+.+++|++++.+
T Consensus        68 ~ll~dat~~~~~~pP~-fa------~~f~~pvIGVITK~Dl~~~-~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~  139 (143)
T PF10662_consen   68 LLLQDATEPRSVFPPG-FA------SMFNKPVIGVITKIDLPSD-DANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKD  139 (143)
T ss_pred             EEEecCCCCCccCCch-hh------cccCCCEEEEEECccCccc-hhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHH
Confidence            9999999874332111 11      1235789999999999743 2345666777777777 489999999999999999


Q ss_pred             HHH
Q 028986          190 VLI  192 (200)
Q Consensus       190 ~i~  192 (200)
                      +|-
T Consensus       140 ~L~  142 (143)
T PF10662_consen  140 YLE  142 (143)
T ss_pred             HHh
Confidence            874

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.80  E-value=4.7e-18  Score=116.15  Aligned_cols=156  Identities=28%  Similarity=0.378  Sum_probs=116.4

Q ss_pred             CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCC-------C-----ccccceeEEEEEEEecCCcEEEEEEEeCCChhhhh
Q 028986           30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPT-------S-----KVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYA   97 (200)
Q Consensus        30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~-------~-----~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~   97 (200)
                      +....||+|+|+.++||||+++.+........       .     +.+...++..  ..+.++  ..+++++||||+++.
T Consensus         7 k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~--~~~~~~--~~v~LfgtPGq~RF~   82 (187)
T COG2229           7 KMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGS--IELDED--TGVHLFGTPGQERFK   82 (187)
T ss_pred             cccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccc--eEEcCc--ceEEEecCCCcHHHH
Confidence            45677999999999999999999998653111       0     0112222221  122121  468999999999999


Q ss_pred             hcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHc--CCeEEE
Q 028986           98 ALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKN--GMFFIE  175 (200)
Q Consensus        98 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~  175 (200)
                      -.|.-+.+.+.++|+++|.+.+..+ .....++.+....  .+|+++.+||.|+....  +.+.+.++.+..  ..++++
T Consensus        83 fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~--~ip~vVa~NK~DL~~a~--ppe~i~e~l~~~~~~~~vi~  157 (187)
T COG2229          83 FMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRN--PIPVVVAINKQDLFDAL--PPEKIREALKLELLSVPVIE  157 (187)
T ss_pred             HHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhcc--CCCEEEEeeccccCCCC--CHHHHHHHHHhccCCCceee
Confidence            9999999999999999999998777 4444555554432  28999999999997754  355666666554  789999


Q ss_pred             ecCCCCCCHHHHHHHHHHh
Q 028986          176 TSAKTADNINQLFEVLITC  194 (200)
Q Consensus       176 ~S~~~~~~i~~~~~~i~~~  194 (200)
                      .++.++++..+.+..+..+
T Consensus       158 ~~a~e~~~~~~~L~~ll~~  176 (187)
T COG2229         158 IDATEGEGARDQLDVLLLK  176 (187)
T ss_pred             eecccchhHHHHHHHHHhh
Confidence            9999999999999888776

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.80  E-value=1.4e-18  Score=134.37  Aligned_cols=150  Identities=20%  Similarity=0.175  Sum_probs=103.6

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcCCCCCCC-ccccceeEEEEEEEecCCcEEEEEEEeCCChh---------hhhhccccc
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTS-KVTVGASFLSQTIALQDSTTVKFEIWDTAGQE---------RYAALAPLY  103 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~---------~~~~~~~~~  103 (200)
                      ..|+|+|.||||||||+|+|++....-.. .+..+.+..+.......   ..+.++||+|.+         .........
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~---~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~A   80 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLG---REFILIDTGGLDDGDEDELQELIREQALIA   80 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcC---ceEEEEECCCCCcCCchHHHHHHHHHHHHH
Confidence            46999999999999999999997654322 23333333334444433   469999999943         223445567


Q ss_pred             ccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCC-eEEEecCCCCC
Q 028986          104 YRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGM-FFIETSAKTAD  182 (200)
Q Consensus       104 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~  182 (200)
                      +..||++|||+|....-+-.+ ....+.++   ..++|+++|+||+|-...    .+...++. .+|. .++.+||..|.
T Consensus        81 i~eADvilfvVD~~~Git~~D-~~ia~~Lr---~~~kpviLvvNK~D~~~~----e~~~~efy-slG~g~~~~ISA~Hg~  151 (444)
T COG1160          81 IEEADVILFVVDGREGITPAD-EEIAKILR---RSKKPVILVVNKIDNLKA----EELAYEFY-SLGFGEPVPISAEHGR  151 (444)
T ss_pred             HHhCCEEEEEEeCCCCCCHHH-HHHHHHHH---hcCCCEEEEEEcccCchh----hhhHHHHH-hcCCCCceEeehhhcc
Confidence            888999999999987533322 22223333   336889999999996421    22333343 3444 69999999999


Q ss_pred             CHHHHHHHHHHhh
Q 028986          183 NINQLFEVLITCT  195 (200)
Q Consensus       183 ~i~~~~~~i~~~~  195 (200)
                      |+.++++.+++.+
T Consensus       152 Gi~dLld~v~~~l  164 (444)
T COG1160         152 GIGDLLDAVLELL  164 (444)
T ss_pred             CHHHHHHHHHhhc
Confidence            9999999999986

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.80  E-value=5.7e-18  Score=121.08  Aligned_cols=147  Identities=14%  Similarity=0.117  Sum_probs=94.6

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHcCCCC---------C-----CCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhh
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVRGQFD---------P-----TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAA   98 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~~~~~---------~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~   98 (200)
                      .++|+++|+.++|||||+++|+.....         .     ......+.+.......+.. ...++.++||||+..+..
T Consensus         2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~-~~~~i~~iDtPG~~~~~~   80 (195)
T cd01884           2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYET-ANRHYAHVDCPGHADYIK   80 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecC-CCeEEEEEECcCHHHHHH
Confidence            478999999999999999999863100         0     0001112222222233322 235789999999988887


Q ss_pred             cccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCe-EEEEEeCCCCCCCCcC---CHHHHHHHHHHc-----
Q 028986           99 LAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIV-MALVGNKADLHEKREV---PAQDGIEYAEKN-----  169 (200)
Q Consensus        99 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~iiv~nK~D~~~~~~~---~~~~~~~~~~~~-----  169 (200)
                      .....+..+|++++|+|+...-. ......+..+...   ++| +++++||+|+....+.   ..+++.++....     
T Consensus        81 ~~~~~~~~~D~~ilVvda~~g~~-~~~~~~~~~~~~~---~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~  156 (195)
T cd01884          81 NMITGAAQMDGAILVVSATDGPM-PQTREHLLLARQV---GVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGD  156 (195)
T ss_pred             HHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhccccc
Confidence            77778889999999999986522 2223333444433   455 7788999998533221   112344444433     


Q ss_pred             CCeEEEecCCCCCCH
Q 028986          170 GMFFIETSAKTADNI  184 (200)
Q Consensus       170 ~~~~~~~S~~~~~~i  184 (200)
                      +++++++|+++|.++
T Consensus       157 ~v~iipiSa~~g~n~  171 (195)
T cd01884         157 NTPIVRGSALKALEG  171 (195)
T ss_pred             CCeEEEeeCccccCC
Confidence            368999999999874

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.80  E-value=1.4e-18  Score=125.79  Aligned_cols=148  Identities=22%  Similarity=0.179  Sum_probs=90.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCCCCc-----------------------------cccceeEEEEEEEecCCcEEEE
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSK-----------------------------VTVGASFLSQTIALQDSTTVKF   85 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~   85 (200)
                      ||+|+|++++|||||+++|+.........                             ...+.+.......+.. ...++
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~-~~~~~   79 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFST-PKRKF   79 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEec-CCceE
Confidence            68999999999999999998643211100                             0011111111111211 22578


Q ss_pred             EEEeCCChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcC----CHHH
Q 028986           86 EIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREV----PAQD  161 (200)
Q Consensus        86 ~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~----~~~~  161 (200)
                      .+|||||++++...+...++.+|++++|+|++.+..-. .......+...  ...++++|+||+|+......    ...+
T Consensus        80 ~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~-~~~~~~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~i~~~  156 (208)
T cd04166          80 IIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQ-TRRHSYILSLL--GIRHVVVAVNKMDLVDYSEEVFEEIVAD  156 (208)
T ss_pred             EEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHh-HHHHHHHHHHc--CCCcEEEEEEchhcccCCHHHHHHHHHH
Confidence            99999999887766666788999999999998753211 12222222222  12357889999998643211    1123


Q ss_pred             HHHHHHHcC---CeEEEecCCCCCCHHH
Q 028986          162 GIEYAEKNG---MFFIETSAKTADNINQ  186 (200)
Q Consensus       162 ~~~~~~~~~---~~~~~~S~~~~~~i~~  186 (200)
                      ..++...++   .+++++||+++.|+.+
T Consensus       157 ~~~~~~~~~~~~~~ii~iSA~~g~ni~~  184 (208)
T cd04166         157 YLAFAAKLGIEDITFIPISALDGDNVVS  184 (208)
T ss_pred             HHHHHHHcCCCCceEEEEeCCCCCCCcc
Confidence            344445555   3589999999999875

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>COG2262 HflX GTPases [General function prediction only]

Probab=99.80  E-value=6.5e-18  Score=128.90  Aligned_cols=161  Identities=24%  Similarity=0.243  Sum_probs=120.5

Q ss_pred             CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCCh---------hhhhhc
Q 028986           29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ---------ERYAAL   99 (200)
Q Consensus        29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~---------~~~~~~   99 (200)
                      .+..-..|.++|..++|||||+|+|++...........+.+.+.+.+.+.++.  .+.+.||.|.         +.|.+.
T Consensus       188 ~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~--~vlLtDTVGFI~~LP~~LV~AFksT  265 (411)
T COG2262         188 SRSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGR--KVLLTDTVGFIRDLPHPLVEAFKST  265 (411)
T ss_pred             cccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCCc--eEEEecCccCcccCChHHHHHHHHH
Confidence            34556689999999999999999999876655555555556666666676644  7899999993         223333


Q ss_pred             ccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCC
Q 028986          100 APLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAK  179 (200)
Q Consensus       100 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~  179 (200)
                      .+ ....+|+++.|+|++++...+.+..-...+.+.....+|+|+|.||+|+..+..     .........-..+.+||+
T Consensus       266 LE-E~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~-----~~~~~~~~~~~~v~iSA~  339 (411)
T COG2262         266 LE-EVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE-----ILAELERGSPNPVFISAK  339 (411)
T ss_pred             HH-HhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh-----hhhhhhhcCCCeEEEEec
Confidence            22 345699999999999998778887777788887777799999999999765433     111222111148999999


Q ss_pred             CCCCHHHHHHHHHHhhcc
Q 028986          180 TADNINQLFEVLITCTSS  197 (200)
Q Consensus       180 ~~~~i~~~~~~i~~~~~~  197 (200)
                      ++.|++.+++.|.+.+..
T Consensus       340 ~~~gl~~L~~~i~~~l~~  357 (411)
T COG2262         340 TGEGLDLLRERIIELLSG  357 (411)
T ss_pred             cCcCHHHHHHHHHHHhhh
Confidence            999999999999988764

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.80  E-value=3.9e-18  Score=140.28  Aligned_cols=157  Identities=15%  Similarity=0.111  Sum_probs=103.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCC---CCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEE
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQ---FDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAV  111 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i  111 (200)
                      -|.++|+.++|||||+++|++..   +........+.+.....+...++  ..+.+||+||++.+.......+..+|+++
T Consensus         2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g--~~i~~IDtPGhe~fi~~m~~g~~~~D~~l   79 (614)
T PRK10512          2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDG--RVLGFIDVPGHEKFLSNMLAGVGGIDHAL   79 (614)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCC--cEEEEEECCCHHHHHHHHHHHhhcCCEEE
Confidence            48899999999999999999743   22222222222222222223233  35899999999998877777788999999


Q ss_pred             EEEeCCCHHhHHHHHHHHHHHHHcCCCCCe-EEEEEeCCCCCCCCcC--CHHHHHHHHHHcC---CeEEEecCCCCCCHH
Q 028986          112 VVYDITSPDSFNKAQYWVKELQKHGSPDIV-MALVGNKADLHEKREV--PAQDGIEYAEKNG---MFFIETSAKTADNIN  185 (200)
Q Consensus       112 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~iiv~nK~D~~~~~~~--~~~~~~~~~~~~~---~~~~~~S~~~~~~i~  185 (200)
                      +|+|++.... ......+..+...   ++| +++|+||+|+.+....  ..+++.+++...+   .+++++|+++|.|++
T Consensus        80 LVVda~eg~~-~qT~ehl~il~~l---gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~  155 (614)
T PRK10512         80 LVVACDDGVM-AQTREHLAILQLT---GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGID  155 (614)
T ss_pred             EEEECCCCCc-HHHHHHHHHHHHc---CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCH
Confidence            9999987421 1112222333322   344 6799999998643221  1233444444433   689999999999999


Q ss_pred             HHHHHHHHhhcc
Q 028986          186 QLFEVLITCTSS  197 (200)
Q Consensus       186 ~~~~~i~~~~~~  197 (200)
                      +++++|.+....
T Consensus       156 ~L~~~L~~~~~~  167 (614)
T PRK10512        156 ALREHLLQLPER  167 (614)
T ss_pred             HHHHHHHHhhcc
Confidence            999999876543

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.80  E-value=1.4e-18  Score=134.65  Aligned_cols=156  Identities=22%  Similarity=0.234  Sum_probs=106.9

Q ss_pred             CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhh--------hccc
Q 028986           30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYA--------ALAP  101 (200)
Q Consensus        30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~--------~~~~  101 (200)
                      -..-++++|+|.||+|||||+|+|.+.+....+.. .+++....+..+ +-..+.+.++||+|..+..        ....
T Consensus       214 lr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI-~GTTRDviee~i-~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~  291 (454)
T COG0486         214 LREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDI-AGTTRDVIEEDI-NLNGIPVRLVDTAGIRETDDVVERIGIERAK  291 (454)
T ss_pred             hhcCceEEEECCCCCcHHHHHHHHhcCCceEecCC-CCCccceEEEEE-EECCEEEEEEecCCcccCccHHHHHHHHHHH
Confidence            34568999999999999999999999876554443 233332333322 1222789999999954322        2223


Q ss_pred             ccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCC
Q 028986          102 LYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTA  181 (200)
Q Consensus       102 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~  181 (200)
                      ..++++|.++||+|.+.+.+-.... .+.    ....+.|+++|.||.|+.........   +  ...+.+++.+|++++
T Consensus       292 ~~i~~ADlvL~v~D~~~~~~~~d~~-~~~----~~~~~~~~i~v~NK~DL~~~~~~~~~---~--~~~~~~~i~iSa~t~  361 (454)
T COG0486         292 KAIEEADLVLFVLDASQPLDKEDLA-LIE----LLPKKKPIIVVLNKADLVSKIELESE---K--LANGDAIISISAKTG  361 (454)
T ss_pred             HHHHhCCEEEEEEeCCCCCchhhHH-HHH----hcccCCCEEEEEechhcccccccchh---h--ccCCCceEEEEecCc
Confidence            4578899999999999862222221 111    23567889999999999765442111   1  112446899999999


Q ss_pred             CCHHHHHHHHHHhhcc
Q 028986          182 DNINQLFEVLITCTSS  197 (200)
Q Consensus       182 ~~i~~~~~~i~~~~~~  197 (200)
                      .|++.+.+.|.+.+..
T Consensus       362 ~Gl~~L~~~i~~~~~~  377 (454)
T COG0486         362 EGLDALREAIKQLFGK  377 (454)
T ss_pred             cCHHHHHHHHHHHHhh
Confidence            9999999999887654

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.79  E-value=6.8e-18  Score=138.21  Aligned_cols=158  Identities=21%  Similarity=0.258  Sum_probs=101.3

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCc----cccceeEEEEEEEec-CCcE-----E-----EEEEEeCCChhh
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSK----VTVGASFLSQTIALQ-DSTT-----V-----KFEIWDTAGQER   95 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~~-----~-----~~~l~D~~g~~~   95 (200)
                      .+...|+|+|++++|||||+++|.+........    ++.+..+........ .+..     .     .+.+|||||++.
T Consensus         4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~   83 (586)
T PRK04004          4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA   83 (586)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence            345579999999999999999998754322221    122222211111000 0110     1     268999999999


Q ss_pred             hhhcccccccCccEEEEEEeCCC---HHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcC----C--------HH
Q 028986           96 YAALAPLYYRGAAVAVVVYDITS---PDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREV----P--------AQ  160 (200)
Q Consensus        96 ~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~----~--------~~  160 (200)
                      +...+...+..+|++++|+|+++   +.+++.+.    .+.   ..++|+++++||+|+......    .        ..
T Consensus        84 f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~----~~~---~~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~  156 (586)
T PRK04004         84 FTNLRKRGGALADIAILVVDINEGFQPQTIEAIN----ILK---RRKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQ  156 (586)
T ss_pred             HHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH----HHH---HcCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhH
Confidence            99888888899999999999997   45554433    222   237889999999998521110    0        00


Q ss_pred             -----------HHHHHHHH---------------cCCeEEEecCCCCCCHHHHHHHHHHhh
Q 028986          161 -----------DGIEYAEK---------------NGMFFIETSAKTADNINQLFEVLITCT  195 (200)
Q Consensus       161 -----------~~~~~~~~---------------~~~~~~~~S~~~~~~i~~~~~~i~~~~  195 (200)
                                 +.......               ..++++++|+++|.|++++++.+...+
T Consensus       157 ~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~  217 (586)
T PRK04004        157 RVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA  217 (586)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence                       00011111               135799999999999999998887544

>PRK10218 GTP-binding protein; Provisional

Probab=99.79  E-value=7.3e-18  Score=138.02  Aligned_cols=160  Identities=15%  Similarity=0.209  Sum_probs=110.1

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHc--CCCCCCC------------ccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhh
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVR--GQFDPTS------------KVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAA   98 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~   98 (200)
                      --+|+|+|+.++|||||+++|+.  +.+....            ....+.+.......+... .+++.+|||||+..+..
T Consensus         5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~-~~~inliDTPG~~df~~   83 (607)
T PRK10218          5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWN-DYRINIVDTPGHADFGG   83 (607)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecC-CEEEEEEECCCcchhHH
Confidence            34899999999999999999997  2222211            122334443443444333 37899999999999999


Q ss_pred             cccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcC-CHHHHHHHHHH-------cC
Q 028986           99 LAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREV-PAQDGIEYAEK-------NG  170 (200)
Q Consensus        99 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~-~~~~~~~~~~~-------~~  170 (200)
                      .+..+++.+|++++|+|+.+.... ....++..+..   .++|.++++||+|+...+.. ..+++..+...       ..
T Consensus        84 ~v~~~l~~aDg~ILVVDa~~G~~~-qt~~~l~~a~~---~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~  159 (607)
T PRK10218         84 EVERVMSMVDSVLLVVDAFDGPMP-QTRFVTKKAFA---YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLD  159 (607)
T ss_pred             HHHHHHHhCCEEEEEEecccCccH-HHHHHHHHHHH---cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccC
Confidence            999999999999999999875322 22333333333   36788999999998643221 12233333221       34


Q ss_pred             CeEEEecCCCCC----------CHHHHHHHHHHhhcc
Q 028986          171 MFFIETSAKTAD----------NINQLFEVLITCTSS  197 (200)
Q Consensus       171 ~~~~~~S~~~~~----------~i~~~~~~i~~~~~~  197 (200)
                      ++++.+|+++|.          ++..+++.|++.+..
T Consensus       160 ~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~  196 (607)
T PRK10218        160 FPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPA  196 (607)
T ss_pred             CCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCC
Confidence            679999999998          588999988887653

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.78  E-value=1.6e-17  Score=122.32  Aligned_cols=113  Identities=17%  Similarity=0.148  Sum_probs=77.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCCCC----------------ccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhh
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQFDPTS----------------KVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAA   98 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~   98 (200)
                      +|+++|+.|+|||||+++|+........                ....+.........+... ..++.+|||||+.++..
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~-~~~i~liDTPG~~~f~~   79 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWE-DTKVNLIDTPGHMDFIA   79 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEEC-CEEEEEEeCCCccchHH
Confidence            5899999999999999999864211000                001111111112222222 26899999999998888


Q ss_pred             cccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCC
Q 028986           99 LAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLH  152 (200)
Q Consensus        99 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~  152 (200)
                      .+..+++.+|++++|+|+.+.... ....++..+...   ++|+++++||+|+.
T Consensus        80 ~~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~~---~~P~iivvNK~D~~  129 (237)
T cd04168          80 EVERSLSVLDGAILVISAVEGVQA-QTRILWRLLRKL---NIPTIIFVNKIDRA  129 (237)
T ss_pred             HHHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHHc---CCCEEEEEECcccc
Confidence            888899999999999999986433 334455555433   68899999999985

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>cd04167 Snu114p Snu114p subfamily

Probab=99.78  E-value=5.1e-18  Score=123.41  Aligned_cols=157  Identities=17%  Similarity=0.172  Sum_probs=98.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCCCC-----------------ccccceeEE--EEEEEec--CCcEEEEEEEeCCCh
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQFDPTS-----------------KVTVGASFL--SQTIALQ--DSTTVKFEIWDTAGQ   93 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~~~~~~-----------------~~~~~~~~~--~~~~~~~--~~~~~~~~l~D~~g~   93 (200)
                      +|+|+|+.++|||||+++|+........                 ....+....  ...+.+.  ++..+.+.+|||||+
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~   81 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH   81 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence            6899999999999999999875432210                 000111111  1111111  344588999999999


Q ss_pred             hhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCc-CCH-----------HH
Q 028986           94 ERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKRE-VPA-----------QD  161 (200)
Q Consensus        94 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~-~~~-----------~~  161 (200)
                      .++...+..++..+|++++|+|+.+..+... ..++.....   .+.|+++|+||+|+...+. ...           ++
T Consensus        82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~---~~~p~iiviNK~D~~~~~~~l~~~~~~~~l~~~i~~  157 (213)
T cd04167          82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL---EGLPIVLVINKIDRLILELKLPPNDAYFKLRHIIDE  157 (213)
T ss_pred             cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECcccCcccccCCHHHHHHHHHHHHHH
Confidence            9888888888999999999999987654432 334443332   3588999999999752110 001           11


Q ss_pred             HHHHHHHcC-------Ce----EEEecCCCCCCHH--------HHHHHHHHhh
Q 028986          162 GIEYAEKNG-------MF----FIETSAKTADNIN--------QLFEVLITCT  195 (200)
Q Consensus       162 ~~~~~~~~~-------~~----~~~~S~~~~~~i~--------~~~~~i~~~~  195 (200)
                      +..++....       .|    +++.|++.++.+.        ++++.|.+.+
T Consensus       158 ~n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~~~~~~~~~~~~~~~~~~~  210 (213)
T cd04167         158 VNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFTLESFAKKYGLVDSIVSNI  210 (213)
T ss_pred             HHHHHHHhcCCCceEeccCCCeEEEEecCCCeEEecHHHHhhhhHHHHHHhhC
Confidence            222332232       22    6789999998776        5666655543

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.78  E-value=1.6e-17  Score=115.91  Aligned_cols=159  Identities=19%  Similarity=0.182  Sum_probs=110.3

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCC----------hhhhhhcc
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAG----------QERYAALA  100 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g----------~~~~~~~~  100 (200)
                      +...-|+++|.++||||||||+|++.+.......++|-+....-+.+.+    .+.++|.||          .+.+....
T Consensus        22 ~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~----~~~lVDlPGYGyAkv~k~~~e~w~~~i   97 (200)
T COG0218          22 DDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDD----ELRLVDLPGYGYAKVPKEVKEKWKKLI   97 (200)
T ss_pred             CCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecC----cEEEEeCCCcccccCCHHHHHHHHHHH
Confidence            4555799999999999999999999775455556666666555555544    388999999          34556666


Q ss_pred             cccccC---ccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHc----CCe-
Q 028986          101 PLYYRG---AAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKN----GMF-  172 (200)
Q Consensus       101 ~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~----~~~-  172 (200)
                      ..|++.   -.++++++|+..+-...+ ..+++.+.   ..++|+++++||+|.....+.. ......++..    ... 
T Consensus        98 ~~YL~~R~~L~~vvlliD~r~~~~~~D-~em~~~l~---~~~i~~~vv~tK~DKi~~~~~~-k~l~~v~~~l~~~~~~~~  172 (200)
T COG0218          98 EEYLEKRANLKGVVLLIDARHPPKDLD-REMIEFLL---ELGIPVIVVLTKADKLKKSERN-KQLNKVAEELKKPPPDDQ  172 (200)
T ss_pred             HHHHhhchhheEEEEEEECCCCCcHHH-HHHHHHHH---HcCCCeEEEEEccccCChhHHH-HHHHHHHHHhcCCCCccc
Confidence            666643   468899999987633322 23334444   3488999999999987653322 1122333222    222 


Q ss_pred             -EEEecCCCCCCHHHHHHHHHHhhccc
Q 028986          173 -FIETSAKTADNINQLFEVLITCTSSY  198 (200)
Q Consensus       173 -~~~~S~~~~~~i~~~~~~i~~~~~~~  198 (200)
                       ++..|+..+.|++++...|.+.+.+.
T Consensus       173 ~~~~~ss~~k~Gi~~l~~~i~~~~~~~  199 (200)
T COG0218         173 WVVLFSSLKKKGIDELKAKILEWLKEA  199 (200)
T ss_pred             eEEEEecccccCHHHHHHHHHHHhhcc
Confidence             78889999999999999999887653

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.77  E-value=2e-17  Score=121.47  Aligned_cols=166  Identities=17%  Similarity=0.191  Sum_probs=107.5

Q ss_pred             CCCCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChh------------
Q 028986           27 SDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE------------   94 (200)
Q Consensus        27 ~~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~------------   94 (200)
                      ..+..+.++|+|+|.|++|||||.|.+.+.+..+.+....++.....-+ +..+. .++.++||||.-            
T Consensus        66 e~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi-~ts~e-TQlvf~DTPGlvs~~~~r~~~l~~  143 (379)
T KOG1423|consen   66 EEEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGI-ITSGE-TQLVFYDTPGLVSKKMHRRHHLMM  143 (379)
T ss_pred             chhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEE-EecCc-eEEEEecCCcccccchhhhHHHHH
Confidence            3455788999999999999999999999998877666544444333222 22333 689999999921            


Q ss_pred             hhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCc-------------CC---
Q 028986           95 RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKRE-------------VP---  158 (200)
Q Consensus        95 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~-------------~~---  158 (200)
                      .........+..+|.+++++|+++....-. ...+..+...  ..+|-++|.||.|....+.             +.   
T Consensus       144 s~lq~~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~y--s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~k  220 (379)
T KOG1423|consen  144 SVLQNPRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEY--SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLK  220 (379)
T ss_pred             HhhhCHHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHH--hcCCceeeccchhcchhhhHHhhhHHhccccccchhh
Confidence            011122345677999999999996321110 1223333332  2677899999999854321             11   


Q ss_pred             HHHHHHHHHH---------cCC----eEEEecCCCCCCHHHHHHHHHHhhcc
Q 028986          159 AQDGIEYAEK---------NGM----FFIETSAKTADNINQLFEVLITCTSS  197 (200)
Q Consensus       159 ~~~~~~~~~~---------~~~----~~~~~S~~~~~~i~~~~~~i~~~~~~  197 (200)
                      .+...++...         .++    .+|.+||+.|+|++++.++|+.++..
T Consensus       221 l~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~  272 (379)
T KOG1423|consen  221 LEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPP  272 (379)
T ss_pred             hhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCC
Confidence            1111111110         112    28999999999999999999988764

>PRK12735 elongation factor Tu; Reviewed

Probab=99.76  E-value=4e-17  Score=128.76  Aligned_cols=162  Identities=14%  Similarity=0.133  Sum_probs=104.4

Q ss_pred             CCCceeeEEEEcCCCCcHHHHHHHHHcCCC----------C--CC--CccccceeEEEEEEEecCCcEEEEEEEeCCChh
Q 028986           29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQF----------D--PT--SKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE   94 (200)
Q Consensus        29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~----------~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~   94 (200)
                      ..++.++|+++|+.++|||||+++|++...          .  ..  .....+.+.......+... ..++.++||||++
T Consensus         8 ~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~-~~~i~~iDtPGh~   86 (396)
T PRK12735          8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETA-NRHYAHVDCPGHA   86 (396)
T ss_pred             CCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCC-CcEEEEEECCCHH
Confidence            456789999999999999999999986210          0  00  0011122222222223222 2578999999999


Q ss_pred             hhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEE-EEEeCCCCCCCCcC---CHHHHHHHHHHcC
Q 028986           95 RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMA-LVGNKADLHEKREV---PAQDGIEYAEKNG  170 (200)
Q Consensus        95 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~i-iv~nK~D~~~~~~~---~~~~~~~~~~~~~  170 (200)
                      ++.......+..+|++++|+|+..... .....++..+..   .++|.+ +++||+|+....+.   ..+++..+...++
T Consensus        87 ~f~~~~~~~~~~aD~~llVvda~~g~~-~qt~e~l~~~~~---~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~  162 (396)
T PRK12735         87 DYVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYD  162 (396)
T ss_pred             HHHHHHHhhhccCCEEEEEEECCCCCc-hhHHHHHHHHHH---cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcC
Confidence            887777777888999999999987422 222233333332   356755 57999998643221   1224445555442


Q ss_pred             -----CeEEEecCCCCC----------CHHHHHHHHHHhh
Q 028986          171 -----MFFIETSAKTAD----------NINQLFEVLITCT  195 (200)
Q Consensus       171 -----~~~~~~S~~~~~----------~i~~~~~~i~~~~  195 (200)
                           ++++++|+.++.          ++.++++.|.+.+
T Consensus       163 ~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~  202 (396)
T PRK12735        163 FPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYI  202 (396)
T ss_pred             CCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence                 679999999984          6788888887754

>PRK12736 elongation factor Tu; Reviewed

Probab=99.76  E-value=3.6e-17  Score=128.96  Aligned_cols=162  Identities=14%  Similarity=0.126  Sum_probs=104.8

Q ss_pred             CCceeeEEEEcCCCCcHHHHHHHHHcCCCCC--------------CCccccceeEEEEEEEecCCcEEEEEEEeCCChhh
Q 028986           30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDP--------------TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQER   95 (200)
Q Consensus        30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~   95 (200)
                      .++.++|+++|+.++|||||+++|++.....              ......+.+.......+... ..++.++|+||+++
T Consensus         9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~-~~~i~~iDtPGh~~   87 (394)
T PRK12736          9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETE-KRHYAHVDCPGHAD   87 (394)
T ss_pred             CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCC-CcEEEEEECCCHHH
Confidence            5678999999999999999999998631100              00011122222222333222 25789999999998


Q ss_pred             hhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCe-EEEEEeCCCCCCCCcCC---HHHHHHHHHHcC-
Q 028986           96 YAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIV-MALVGNKADLHEKREVP---AQDGIEYAEKNG-  170 (200)
Q Consensus        96 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~iiv~nK~D~~~~~~~~---~~~~~~~~~~~~-  170 (200)
                      |.......+..+|++++|+|+.....-. ....+..+...   ++| +++++||+|+....+..   .+++..+....+ 
T Consensus        88 f~~~~~~~~~~~d~~llVvd~~~g~~~~-t~~~~~~~~~~---g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~  163 (394)
T PRK12736         88 YVKNMITGAAQMDGAILVVAATDGPMPQ-TREHILLARQV---GVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDF  163 (394)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCCchh-HHHHHHHHHHc---CCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCC
Confidence            8777767778899999999998642211 22333333333   567 67889999986432221   124444444443 


Q ss_pred             ----CeEEEecCCCCC--------CHHHHHHHHHHhhc
Q 028986          171 ----MFFIETSAKTAD--------NINQLFEVLITCTS  196 (200)
Q Consensus       171 ----~~~~~~S~~~~~--------~i~~~~~~i~~~~~  196 (200)
                          ++++++|++++.        ++.++++.|.+.+.
T Consensus       164 ~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp  201 (394)
T PRK12736        164 PGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP  201 (394)
T ss_pred             CcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence                579999999983        67888888877653

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.76  E-value=8.6e-18  Score=122.67  Aligned_cols=148  Identities=20%  Similarity=0.135  Sum_probs=89.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCCC---------------------------Cc--cccceeEEEEEEEecCCcEEEE
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQFDPT---------------------------SK--VTVGASFLSQTIALQDSTTVKF   85 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~~~~~---------------------------~~--~~~~~~~~~~~~~~~~~~~~~~   85 (200)
                      +|+++|+.++|||||+.+|+.......                           ..  ...+.+.......+.. ...++
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~-~~~~i   79 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFET-EKYRF   79 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEee-CCeEE
Confidence            589999999999999999974211000                           00  0011111111112211 22689


Q ss_pred             EEEeCCChhhhhhcccccccCccEEEEEEeCCCHHh------HHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCC--cC
Q 028986           86 EIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDS------FNKAQYWVKELQKHGSPDIVMALVGNKADLHEKR--EV  157 (200)
Q Consensus        86 ~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~--~~  157 (200)
                      .+||+||+..+...+...+..+|++++|+|+++...      .......+......  ...|+++++||+|+....  ..
T Consensus        80 ~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiivvNK~Dl~~~~~~~~  157 (219)
T cd01883          80 TILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTL--GVKQLIVAVNKMDDVTVNWSEE  157 (219)
T ss_pred             EEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHc--CCCeEEEEEEccccccccccHH
Confidence            999999998877777777888999999999997421      11122222222222  236799999999987321  11


Q ss_pred             C----HHHHHHHHHHc-----CCeEEEecCCCCCCHH
Q 028986          158 P----AQDGIEYAEKN-----GMFFIETSAKTADNIN  185 (200)
Q Consensus       158 ~----~~~~~~~~~~~-----~~~~~~~S~~~~~~i~  185 (200)
                      .    .+++..+....     +++++++||++|.|++
T Consensus       158 ~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         158 RYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             HHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence            1    11222233333     3679999999999986

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.75  E-value=2.6e-17  Score=118.30  Aligned_cols=160  Identities=15%  Similarity=0.146  Sum_probs=95.3

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccce-eEEEEEEEecCCcEEEEEEEeCCChhhhhh-----cccccccC
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGA-SFLSQTIALQDSTTVKFEIWDTAGQERYAA-----LAPLYYRG  106 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-----~~~~~~~~  106 (200)
                      +++|+++|.+|+|||||+|+|++...........+. ........+.......+.+||+||......     +....+..
T Consensus         1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~   80 (197)
T cd04104           1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE   80 (197)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence            478999999999999999999986543322222221 111111111111123689999999632111     11223567


Q ss_pred             ccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCc-----------CCHHHHHHHHH----HcC-
Q 028986          107 AAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKRE-----------VPAQDGIEYAE----KNG-  170 (200)
Q Consensus       107 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~-----------~~~~~~~~~~~----~~~-  170 (200)
                      +|+++++.+.. .  -..-..|+..+...   +.|+++|+||+|+....+           ...+++.+.+.    ..+ 
T Consensus        81 ~d~~l~v~~~~-~--~~~d~~~~~~l~~~---~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~  154 (197)
T cd04104          81 YDFFIIISSTR-F--SSNDVKLAKAIQCM---GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAGV  154 (197)
T ss_pred             cCEEEEEeCCC-C--CHHHHHHHHHHHHh---CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcCC
Confidence            89998885432 1  12224455555554   578999999999853211           11112222222    112 


Q ss_pred             --CeEEEecCC--CCCCHHHHHHHHHHhhccc
Q 028986          171 --MFFIETSAK--TADNINQLFEVLITCTSSY  198 (200)
Q Consensus       171 --~~~~~~S~~--~~~~i~~~~~~i~~~~~~~  198 (200)
                        -++|.+|+.  .+.++..+.+.|+..+.+.
T Consensus       155 ~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~  186 (197)
T cd04104         155 SEPPVFLVSNFDPSDYDFPKLRETLLKDLPAH  186 (197)
T ss_pred             CCCCEEEEeCCChhhcChHHHHHHHHHHhhHH
Confidence              258999998  6799999999999988753

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.75  E-value=5.1e-17  Score=131.10  Aligned_cols=156  Identities=21%  Similarity=0.219  Sum_probs=107.1

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhh------hccccc-c-
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYA------ALAPLY-Y-  104 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~------~~~~~~-~-  104 (200)
                      ..+|+++|+||+|||||+|+|++....--.-+  +.+...++-.+.... .+++++|.||.....      .....| + 
T Consensus         3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwp--GvTVEkkeg~~~~~~-~~i~ivDLPG~YSL~~~S~DE~Var~~ll~   79 (653)
T COG0370           3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWP--GVTVEKKEGKLKYKG-HEIEIVDLPGTYSLTAYSEDEKVARDFLLE   79 (653)
T ss_pred             cceEEEecCCCccHHHHHHHHhccCceecCCC--CeeEEEEEEEEEecC-ceEEEEeCCCcCCCCCCCchHHHHHHHHhc
Confidence            45699999999999999999999654322222  333333443332222 469999999942221      122222 2 


Q ss_pred             cCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCH
Q 028986          105 RGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNI  184 (200)
Q Consensus       105 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i  184 (200)
                      ...|+++-|+|+++-+--   -++.-++.   .-+.|++++.|+.|..+.+-+..+ .+++.+.+++|+++++|++|+|+
T Consensus        80 ~~~D~ivnVvDAtnLeRn---LyltlQLl---E~g~p~ilaLNm~D~A~~~Gi~ID-~~~L~~~LGvPVv~tvA~~g~G~  152 (653)
T COG0370          80 GKPDLIVNVVDATNLERN---LYLTLQLL---ELGIPMILALNMIDEAKKRGIRID-IEKLSKLLGVPVVPTVAKRGEGL  152 (653)
T ss_pred             CCCCEEEEEcccchHHHH---HHHHHHHH---HcCCCeEEEeccHhhHHhcCCccc-HHHHHHHhCCCEEEEEeecCCCH
Confidence            457999999999986311   12222233   337889999999998766554433 36777789999999999999999


Q ss_pred             HHHHHHHHHhhccc
Q 028986          185 NQLFEVLITCTSSY  198 (200)
Q Consensus       185 ~~~~~~i~~~~~~~  198 (200)
                      +++.+.+.+...+.
T Consensus       153 ~~l~~~i~~~~~~~  166 (653)
T COG0370         153 EELKRAIIELAESK  166 (653)
T ss_pred             HHHHHHHHHhcccc
Confidence            99999998766543

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.74  E-value=9.2e-17  Score=117.23  Aligned_cols=155  Identities=16%  Similarity=0.183  Sum_probs=95.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCCCCccc-----------------------cceeEEEEEE------------EecC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVT-----------------------VGASFLSQTI------------ALQD   79 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~-----------------------~~~~~~~~~~------------~~~~   79 (200)
                      ||+++|+.++|||||+++|....+.+.....                       .+.+.....+            ....
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE   80 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence            5899999999999999999976553211100                       0000000000            0001


Q ss_pred             CcEEEEEEEeCCChhhhhhcccccc--cCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcC
Q 028986           80 STTVKFEIWDTAGQERYAALAPLYY--RGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREV  157 (200)
Q Consensus        80 ~~~~~~~l~D~~g~~~~~~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~  157 (200)
                      .....+.++|+||++.+.......+  ..+|++++|+|+..+.. .....++..+...   ++|+++|+||+|+......
T Consensus        81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~~~---~ip~ivvvNK~D~~~~~~~  156 (224)
T cd04165          81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLALAL---NIPVFVVVTKIDLAPANIL  156 (224)
T ss_pred             eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEECccccCHHHH
Confidence            1125789999999988765544444  36899999999986532 2223344444433   5789999999998543221


Q ss_pred             C--HHHHHHHHH--------------------------HcCCeEEEecCCCCCCHHHHHHHHHH
Q 028986          158 P--AQDGIEYAE--------------------------KNGMFFIETSAKTADNINQLFEVLIT  193 (200)
Q Consensus       158 ~--~~~~~~~~~--------------------------~~~~~~~~~S~~~~~~i~~~~~~i~~  193 (200)
                      .  .+++.++..                          ...++++.+|+.+|.|++++++.|..
T Consensus       157 ~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~  220 (224)
T cd04165         157 QETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL  220 (224)
T ss_pred             HHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence            1  111122221                          01238999999999999999887653

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.74  E-value=8e-17  Score=127.11  Aligned_cols=160  Identities=14%  Similarity=0.118  Sum_probs=99.9

Q ss_pred             CCCceeeEEEEcCCCCcHHHHHHHHHcCCC-------------CC-CCccccceeEEEEEEEecCCcEEEEEEEeCCChh
Q 028986           29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQF-------------DP-TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE   94 (200)
Q Consensus        29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~-------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~   94 (200)
                      ..++.++|+++|+.++|||||+++|++...             +. ......+.+.....+.+.. ...++.+|||||++
T Consensus         8 ~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~-~~~~~~liDtpGh~   86 (394)
T TIGR00485         8 RTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYET-ENRHYAHVDCPGHA   86 (394)
T ss_pred             CCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcC-CCEEEEEEECCchH
Confidence            346789999999999999999999974210             00 0001112222222333333 23678999999999


Q ss_pred             hhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeE-EEEEeCCCCCCCCcCC---HHHHHHHHHHcC
Q 028986           95 RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVM-ALVGNKADLHEKREVP---AQDGIEYAEKNG  170 (200)
Q Consensus        95 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~-iiv~nK~D~~~~~~~~---~~~~~~~~~~~~  170 (200)
                      +|..........+|++++|+|+....... ....+..+...   ++|. ++++||+|+....+..   .+++.+++..++
T Consensus        87 ~f~~~~~~~~~~~D~~ilVvda~~g~~~q-t~e~l~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~  162 (394)
T TIGR00485        87 DYVKNMITGAAQMDGAILVVSATDGPMPQ-TREHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYD  162 (394)
T ss_pred             HHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc---CCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcC
Confidence            88766666677899999999998742111 12233333322   5665 4689999986533211   234555665554


Q ss_pred             -----CeEEEecCCCCC--------CHHHHHHHHHH
Q 028986          171 -----MFFIETSAKTAD--------NINQLFEVLIT  193 (200)
Q Consensus       171 -----~~~~~~S~~~~~--------~i~~~~~~i~~  193 (200)
                           ++++++|+.++.        ++.++++.|.+
T Consensus       163 ~~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~  198 (394)
T TIGR00485       163 FPGDDTPIIRGSALKALEGDAEWEAKILELMDAVDE  198 (394)
T ss_pred             CCccCccEEECccccccccCCchhHhHHHHHHHHHh
Confidence                 689999999874        34455555544

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.73  E-value=1.1e-16  Score=118.92  Aligned_cols=156  Identities=16%  Similarity=0.173  Sum_probs=103.6

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCCh-----hhhhh----cccc
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ-----ERYAA----LAPL  102 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~-----~~~~~----~~~~  102 (200)
                      ....|+|.|+||||||||++++++.+......|..+-..   .+........+++++||||.     ++.+.    ....
T Consensus       167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i---~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~A  243 (346)
T COG1084         167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGI---HVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILA  243 (346)
T ss_pred             CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccce---eEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHH
Confidence            456799999999999999999999765544333222222   22222333368999999993     12211    1111


Q ss_pred             cccCccEEEEEEeCCCH--HhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcC-CeEEEecCC
Q 028986          103 YYRGAAVAVVVYDITSP--DSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNG-MFFIETSAK  179 (200)
Q Consensus       103 ~~~~~d~~i~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~S~~  179 (200)
                      .-.-.++++|++|++..  -+.+....++..+...-.  .|+++|+||.|.......  +++......-+ .....+++.
T Consensus       244 L~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~--~p~v~V~nK~D~~~~e~~--~~~~~~~~~~~~~~~~~~~~~  319 (346)
T COG1084         244 LRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK--APIVVVINKIDIADEEKL--EEIEASVLEEGGEEPLKISAT  319 (346)
T ss_pred             HHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC--CCeEEEEecccccchhHH--HHHHHHHHhhccccccceeee
Confidence            12236899999999964  466777888888877643  899999999998654432  23333333333 347788899


Q ss_pred             CCCCHHHHHHHHHHh
Q 028986          180 TADNINQLFEVLITC  194 (200)
Q Consensus       180 ~~~~i~~~~~~i~~~  194 (200)
                      .+.+++.+...+...
T Consensus       320 ~~~~~d~~~~~v~~~  334 (346)
T COG1084         320 KGCGLDKLREEVRKT  334 (346)
T ss_pred             ehhhHHHHHHHHHHH
Confidence            999888777776665

>cd01850 CDC_Septin CDC/Septin

Probab=99.73  E-value=2.1e-16  Score=118.77  Aligned_cols=144  Identities=17%  Similarity=0.176  Sum_probs=89.3

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHcCCCCCCC----------ccccceeEEEEEEEecCCcEEEEEEEeCCChhh------
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTS----------KVTVGASFLSQTIALQDSTTVKFEIWDTAGQER------   95 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~------   95 (200)
                      ..++|+++|.+|+|||||+|+|++..+....          .++.........+. .++..+++.+|||||...      
T Consensus         3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~-~~g~~~~l~iiDTpGfgd~~~~~~   81 (276)
T cd01850           3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIE-ENGVKLKLTVIDTPGFGDNINNSD   81 (276)
T ss_pred             cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEE-ECCEEEEEEEEecCCccccccchh
Confidence            4689999999999999999999998764331          22223333333333 245568899999999211      


Q ss_pred             --------------------hhhccccccc--CccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCC
Q 028986           96 --------------------YAALAPLYYR--GAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE  153 (200)
Q Consensus        96 --------------------~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~  153 (200)
                                          ....+...+.  .+|+++|+++.+...-...-..++..+.   . .+|+++|+||+|+..
T Consensus        82 ~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~---~-~v~vi~VinK~D~l~  157 (276)
T cd01850          82 CWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLS---K-RVNIIPVIAKADTLT  157 (276)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHh---c-cCCEEEEEECCCcCC
Confidence                                1111112333  4788888888775211111122333332   2 688999999999865


Q ss_pred             CC--cCCHHHHHHHHHHcCCeEEEecCCC
Q 028986          154 KR--EVPAQDGIEYAEKNGMFFIETSAKT  180 (200)
Q Consensus       154 ~~--~~~~~~~~~~~~~~~~~~~~~S~~~  180 (200)
                      ..  ......+.+.+..++++++......
T Consensus       158 ~~e~~~~k~~i~~~l~~~~i~~~~~~~~~  186 (276)
T cd01850         158 PEELKEFKQRIMEDIEEHNIKIYKFPEDE  186 (276)
T ss_pred             HHHHHHHHHHHHHHHHHcCCceECCCCCc
Confidence            32  2234555667777888888776543

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.73  E-value=6.8e-17  Score=117.47  Aligned_cols=114  Identities=14%  Similarity=0.136  Sum_probs=77.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCCCCc----------------cccceeEEEEEEEec-------CCcEEEEEEEeCC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSK----------------VTVGASFLSQTIALQ-------DSTTVKFEIWDTA   91 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~----------------~~~~~~~~~~~~~~~-------~~~~~~~~l~D~~   91 (200)
                      +|+|+|+.++|||||+.+|+.........                .............+.       ++..+.+.+||||
T Consensus         2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP   81 (222)
T cd01885           2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP   81 (222)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence            69999999999999999998643110000                000111111112222       2335789999999


Q ss_pred             ChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCC
Q 028986           92 GQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLH  152 (200)
Q Consensus        92 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~  152 (200)
                      |+.++......+++.+|++++|+|+..+.+... ...+....   ..++|+++|+||+|+.
T Consensus        82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t-~~~l~~~~---~~~~p~ilviNKiD~~  138 (222)
T cd01885          82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQT-ETVLRQAL---KERVKPVLVINKIDRL  138 (222)
T ss_pred             CccccHHHHHHHHHhcCeeEEEEECCCCCCHHH-HHHHHHHH---HcCCCEEEEEECCCcc
Confidence            999999888999999999999999998654433 22222222   2357899999999985

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>CHL00071 tufA elongation factor Tu

Probab=99.73  E-value=2.3e-16  Score=124.97  Aligned_cols=149  Identities=13%  Similarity=0.108  Sum_probs=95.6

Q ss_pred             CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCC--------------CccccceeEEEEEEEecCCcEEEEEEEeCCChhh
Q 028986           30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPT--------------SKVTVGASFLSQTIALQDSTTVKFEIWDTAGQER   95 (200)
Q Consensus        30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~   95 (200)
                      .+..++|+++|++++|||||+++|++......              .....+.+.......+... ..++.++||||+.+
T Consensus         9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~-~~~~~~iDtPGh~~   87 (409)
T CHL00071          9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETE-NRHYAHVDCPGHAD   87 (409)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccC-CeEEEEEECCChHH
Confidence            46679999999999999999999997421100              0011122222222223222 25789999999988


Q ss_pred             hhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCe-EEEEEeCCCCCCCCcC---CHHHHHHHHHHcC-
Q 028986           96 YAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIV-MALVGNKADLHEKREV---PAQDGIEYAEKNG-  170 (200)
Q Consensus        96 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~iiv~nK~D~~~~~~~---~~~~~~~~~~~~~-  170 (200)
                      +.......+..+|++++|+|+..... ......+..+...   ++| +++++||+|+....+.   ..+++..+....+ 
T Consensus        88 ~~~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~~~~---g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~  163 (409)
T CHL00071         88 YVKNMITGAAQMDGAILVVSAADGPM-PQTKEHILLAKQV---GVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDF  163 (409)
T ss_pred             HHHHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCC
Confidence            87777777888999999999986522 2223333333333   567 7788999998653321   1124444444433 


Q ss_pred             ----CeEEEecCCCCCC
Q 028986          171 ----MFFIETSAKTADN  183 (200)
Q Consensus       171 ----~~~~~~S~~~~~~  183 (200)
                          ++++++|+.+|.+
T Consensus       164 ~~~~~~ii~~Sa~~g~n  180 (409)
T CHL00071        164 PGDDIPIVSGSALLALE  180 (409)
T ss_pred             CCCcceEEEcchhhccc
Confidence                6899999998863

>cd04169 RF3 RF3 subfamily

Probab=99.73  E-value=2.9e-16  Score=117.50  Aligned_cols=115  Identities=15%  Similarity=0.132  Sum_probs=76.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCCCCcc--------------------ccceeEEEEEEEecCCcEEEEEEEeCCChh
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKV--------------------TVGASFLSQTIALQDSTTVKFEIWDTAGQE   94 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~   94 (200)
                      +|+|+|++|+|||||+++|+..........                    ..+.........+... .+++.+|||||+.
T Consensus         4 ni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~-~~~i~liDTPG~~   82 (267)
T cd04169           4 TFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYR-DCVINLLDTPGHE   82 (267)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeC-CEEEEEEECCCch
Confidence            699999999999999999985321100000                    0011111222223222 3789999999998


Q ss_pred             hhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCC
Q 028986           95 RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK  154 (200)
Q Consensus        95 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~  154 (200)
                      ++.......++.+|++++|+|+++.... ....++....   ..++|+++++||+|+...
T Consensus        83 df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~~---~~~~P~iivvNK~D~~~a  138 (267)
T cd04169          83 DFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVCR---LRGIPIITFINKLDREGR  138 (267)
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHHHHH---hcCCCEEEEEECCccCCC
Confidence            8877677778899999999999875322 2233333333   236889999999997554

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.73  E-value=5.1e-17  Score=118.12  Aligned_cols=161  Identities=19%  Similarity=0.266  Sum_probs=99.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhh-----cccccccCccE
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAA-----LAPLYYRGAAV  109 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-----~~~~~~~~~d~  109 (200)
                      ||+++|+++|||||+.+.++.+-. +......+.+.......+.....+.+.+||.||+..+..     .....++++++
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~~-p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~   79 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKYS-PRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV   79 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS----GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred             CEEEEcCCCCChhhHHHHHHcCCC-chhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence            799999999999999888887532 222222233322222223222336899999999864433     34667899999


Q ss_pred             EEEEEeCCCHHhHHHH---HHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcC------CHHHHHHHHHHcC---CeEEEec
Q 028986          110 AVVVYDITSPDSFNKA---QYWVKELQKHGSPDIVMALVGNKADLHEKREV------PAQDGIEYAEKNG---MFFIETS  177 (200)
Q Consensus       110 ~i~v~d~~~~~s~~~~---~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~------~~~~~~~~~~~~~---~~~~~~S  177 (200)
                      +|||+|+.+.+-.+.+   ...+..+.+. .+++.+.+++.|+|+..+...      ..+.+.+.+...+   +.++.+|
T Consensus        80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~-sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TS  158 (232)
T PF04670_consen   80 LIYVFDAQSDDYDEDLAYLSDCIEALRQY-SPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTS  158 (232)
T ss_dssp             EEEEEETT-STCHHHHHHHHHHHHHHHHH-STT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-
T ss_pred             EEEEEEcccccHHHHHHHHHHHHHHHHHh-CCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEecc
Confidence            9999999954433444   4444445555 678999999999998654211      1122223333445   7799999


Q ss_pred             CCCCCCHHHHHHHHHHhhccc
Q 028986          178 AKTADNINQLFEVLITCTSSY  198 (200)
Q Consensus       178 ~~~~~~i~~~~~~i~~~~~~~  198 (200)
                      ..+ ..+-+.|..+++.+...
T Consensus       159 I~D-~Sly~A~S~Ivq~LiP~  178 (232)
T PF04670_consen  159 IWD-ESLYEAWSKIVQKLIPN  178 (232)
T ss_dssp             TTS-THHHHHHHHHHHTTSTT
T ss_pred             CcC-cHHHHHHHHHHHHHccc
Confidence            998 58999999999887643

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.72  E-value=3.4e-17  Score=118.96  Aligned_cols=164  Identities=20%  Similarity=0.268  Sum_probs=110.7

Q ss_pred             CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChh-------hhhhcccc
Q 028986           30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE-------RYAALAPL  102 (200)
Q Consensus        30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~-------~~~~~~~~  102 (200)
                      .+.+++|+++|.+|+|||||||+|+.+...+...-..+.+.....+...++.  .+.+||+||-+       ++......
T Consensus        36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~--~l~lwDtPG~gdg~~~D~~~r~~~~d  113 (296)
T COG3596          36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGE--NLVLWDTPGLGDGKDKDAEHRQLYRD  113 (296)
T ss_pred             ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhcccc--ceEEecCCCcccchhhhHHHHHHHHH
Confidence            5678899999999999999999999766555443333333323223333333  68999999943       36677777


Q ss_pred             cccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCC-------cCCHHHHHHHHHH-------
Q 028986          103 YYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKR-------EVPAQDGIEYAEK-------  168 (200)
Q Consensus       103 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~-------~~~~~~~~~~~~~-------  168 (200)
                      ++...|.+++++++.++.---. .+++..+... ..+.++++++|.+|....-       ......++++..+       
T Consensus       114 ~l~~~DLvL~l~~~~draL~~d-~~f~~dVi~~-~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~  191 (296)
T COG3596         114 YLPKLDLVLWLIKADDRALGTD-EDFLRDVIIL-GLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGR  191 (296)
T ss_pred             HhhhccEEEEeccCCCccccCC-HHHHHHHHHh-ccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHH
Confidence            8889999999999999852222 3444554443 3347899999999985431       1111111222111       


Q ss_pred             -c--CCeEEEecCCCCCCHHHHHHHHHHhhcc
Q 028986          169 -N--GMFFIETSAKTADNINQLFEVLITCTSS  197 (200)
Q Consensus       169 -~--~~~~~~~S~~~~~~i~~~~~~i~~~~~~  197 (200)
                       .  --|++..+.+.++|++++...+++.+..
T Consensus       192 ~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~  223 (296)
T COG3596         192 LFQEVKPVVAVSGRLPWGLKELVRALITALPV  223 (296)
T ss_pred             HHhhcCCeEEeccccCccHHHHHHHHHHhCcc
Confidence             1  2268888899999999999999988764

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.72  E-value=8e-16  Score=114.11  Aligned_cols=156  Identities=17%  Similarity=0.137  Sum_probs=110.3

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhh-------hhccccc
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERY-------AALAPLY  103 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-------~~~~~~~  103 (200)
                      .--.+++++|+|++|||||++.|++-+......+..+....+-.+.+.+   .++++.|+||.-+-       ....-..
T Consensus        61 sGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g---a~IQild~Pgii~gas~g~grG~~vlsv  137 (365)
T COG1163          61 SGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG---AQIQLLDLPGIIEGASSGRGRGRQVLSV  137 (365)
T ss_pred             cCCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC---ceEEEEcCcccccCcccCCCCcceeeee
Confidence            4455799999999999999999999766554444444444444455533   68999999984211       1334556


Q ss_pred             ccCccEEEEEEeCCCHHh-HHHHHHHHHH-----------------------------------------HHH-------
Q 028986          104 YRGAAVAVVVYDITSPDS-FNKAQYWVKE-----------------------------------------LQK-------  134 (200)
Q Consensus       104 ~~~~d~~i~v~d~~~~~s-~~~~~~~~~~-----------------------------------------i~~-------  134 (200)
                      .++||++++|+|+..... .+.+...+..                                         +.+       
T Consensus       138 ~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~  217 (365)
T COG1163         138 ARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNAD  217 (365)
T ss_pred             eccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccce
Confidence            889999999999996544 5555444440                                         000       


Q ss_pred             -----------------cCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHhhc
Q 028986          135 -----------------HGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLITCTS  196 (200)
Q Consensus       135 -----------------~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~~~  196 (200)
                                       .....+|.++|.||.|+..     .++...+.+..  .++.+|++.+.|++++.+.|.+.+.
T Consensus       218 V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~-----~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L~  289 (365)
T COG1163         218 VLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPG-----LEELERLARKP--NSVPISAKKGINLDELKERIWDVLG  289 (365)
T ss_pred             EEEecCCcHHHHHHHHhhcceeeeeEEEEecccccC-----HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhhC
Confidence                             1233689999999999755     33444544444  6899999999999999999988764

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.71  E-value=3.7e-16  Score=115.41  Aligned_cols=155  Identities=19%  Similarity=0.212  Sum_probs=105.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhh----hhhccccc---ccCc
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQER----YAALAPLY---YRGA  107 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----~~~~~~~~---~~~~  107 (200)
                      .|.++|.|++|||||+++|.+.+-..-....++.....-++.+.+..  .+.+-|.||.-+    ...+-..|   +..+
T Consensus       198 dvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~--q~tVADiPGiI~GAh~nkGlG~~FLrHiER~  275 (366)
T KOG1489|consen  198 DVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFS--QITVADIPGIIEGAHMNKGLGYKFLRHIERC  275 (366)
T ss_pred             ccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccc--eeEeccCccccccccccCcccHHHHHHHHhh
Confidence            56799999999999999999976432222222222222344444433  489999999421    11122222   4568


Q ss_pred             cEEEEEEeCCCH---HhHHHHHHHHHHHHHc--CCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCC-eEEEecCCCC
Q 028986          108 AVAVVVYDITSP---DSFNKAQYWVKELQKH--GSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGM-FFIETSAKTA  181 (200)
Q Consensus       108 d~~i~v~d~~~~---~s~~~~~~~~~~i~~~--~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~  181 (200)
                      +.++||+|++..   ..++.++.+..++..+  ...+.|.++|+||+|+.+.+   ...+.++++...- .++++||+.+
T Consensus       276 ~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae---~~~l~~L~~~lq~~~V~pvsA~~~  352 (366)
T KOG1489|consen  276 KGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAE---KNLLSSLAKRLQNPHVVPVSAKSG  352 (366)
T ss_pred             ceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHH---HHHHHHHHHHcCCCcEEEeeeccc
Confidence            999999999987   6677776666665443  25578899999999985322   2224566666544 4999999999


Q ss_pred             CCHHHHHHHHHHh
Q 028986          182 DNINQLFEVLITC  194 (200)
Q Consensus       182 ~~i~~~~~~i~~~  194 (200)
                      +++.+++..|.+.
T Consensus       353 egl~~ll~~lr~~  365 (366)
T KOG1489|consen  353 EGLEELLNGLREL  365 (366)
T ss_pred             cchHHHHHHHhhc
Confidence            9999999887654

>PRK00049 elongation factor Tu; Reviewed

Probab=99.71  E-value=1.1e-15  Score=120.67  Aligned_cols=161  Identities=14%  Similarity=0.123  Sum_probs=103.1

Q ss_pred             CCceeeEEEEcCCCCcHHHHHHHHHcCCCC---C-----------CCccccceeEEEEEEEecCCcEEEEEEEeCCChhh
Q 028986           30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFD---P-----------TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQER   95 (200)
Q Consensus        30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~---~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~   95 (200)
                      .+..++|+++|+.++|||||+++|++....   .           ......+.+.......+... ..++.++||||+.+
T Consensus         9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~-~~~i~~iDtPG~~~   87 (396)
T PRK00049          9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETE-KRHYAHVDCPGHAD   87 (396)
T ss_pred             CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCC-CeEEEEEECCCHHH
Confidence            467889999999999999999999873110   0           00011222222222333222 25789999999988


Q ss_pred             hhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEE-EEEeCCCCCCCCcCC---HHHHHHHHHHc--
Q 028986           96 YAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMA-LVGNKADLHEKREVP---AQDGIEYAEKN--  169 (200)
Q Consensus        96 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~i-iv~nK~D~~~~~~~~---~~~~~~~~~~~--  169 (200)
                      +.......+..+|++++|+|+..... .....++..+...   ++|.+ +++||+|+....+..   ..++..+....  
T Consensus        88 f~~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~~~~---g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~  163 (396)
T PRK00049         88 YVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDF  163 (396)
T ss_pred             HHHHHHhhhccCCEEEEEEECCCCCc-hHHHHHHHHHHHc---CCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCC
Confidence            87777777889999999999987522 2223344444433   56765 579999986432211   12333344332  


Q ss_pred             ---CCeEEEecCCCCC----------CHHHHHHHHHHhh
Q 028986          170 ---GMFFIETSAKTAD----------NINQLFEVLITCT  195 (200)
Q Consensus       170 ---~~~~~~~S~~~~~----------~i~~~~~~i~~~~  195 (200)
                         +++++++|++++.          ++.++++.|.+.+
T Consensus       164 ~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~  202 (396)
T PRK00049        164 PGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYI  202 (396)
T ss_pred             CccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcC
Confidence               3689999999875          5677887777654

>PLN03126 Elongation factor Tu; Provisional

Probab=99.70  E-value=5.5e-16  Score=124.16  Aligned_cols=149  Identities=15%  Similarity=0.099  Sum_probs=95.1

Q ss_pred             CCCceeeEEEEcCCCCcHHHHHHHHHcCCC------CC--------CCccccceeEEEEEEEecCCcEEEEEEEeCCChh
Q 028986           29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQF------DP--------TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE   94 (200)
Q Consensus        29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~------~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~   94 (200)
                      ..+..++|+++|+.++|||||+++|+....      ..        ......+.+.......+.. ...++.++|+||++
T Consensus        77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~-~~~~i~liDtPGh~  155 (478)
T PLN03126         77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYET-ENRHYAHVDCPGHA  155 (478)
T ss_pred             ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEec-CCcEEEEEECCCHH
Confidence            356788999999999999999999996211      00        0011112222111222222 22578999999999


Q ss_pred             hhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCe-EEEEEeCCCCCCCCcCC---HHHHHHHHHHc-
Q 028986           95 RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIV-MALVGNKADLHEKREVP---AQDGIEYAEKN-  169 (200)
Q Consensus        95 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~iiv~nK~D~~~~~~~~---~~~~~~~~~~~-  169 (200)
                      +|.......+..+|++++|+|+.....-. ...++..+...   ++| +++++||+|+....+..   .+++..+.... 
T Consensus       156 ~f~~~~~~g~~~aD~ailVVda~~G~~~q-t~e~~~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g  231 (478)
T PLN03126        156 DYVKNMITGAAQMDGAILVVSGADGPMPQ-TKEHILLAKQV---GVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYE  231 (478)
T ss_pred             HHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc---CCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcC
Confidence            98877777778899999999998753222 23333434333   566 77899999986532211   12334444443 


Q ss_pred             ----CCeEEEecCCCCC
Q 028986          170 ----GMFFIETSAKTAD  182 (200)
Q Consensus       170 ----~~~~~~~S~~~~~  182 (200)
                          +++++++|+.++.
T Consensus       232 ~~~~~~~~vp~Sa~~g~  248 (478)
T PLN03126        232 FPGDDIPIISGSALLAL  248 (478)
T ss_pred             CCcCcceEEEEEccccc
Confidence                5679999998874

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=99.70  E-value=3.8e-16  Score=122.64  Aligned_cols=162  Identities=18%  Similarity=0.175  Sum_probs=117.2

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCC--CCC-----------CccccceeEE--EEEEEecCCcEEEEEEEeCCChhh
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQF--DPT-----------SKVTVGASFL--SQTIALQDSTTVKFEIWDTAGQER   95 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~--~~~-----------~~~~~~~~~~--~~~~~~~~~~~~~~~l~D~~g~~~   95 (200)
                      ++.=|+.|+.+-.=|||||..+|+...-  +++           ....-+.+..  ...+.+.++..+.+.++|||||-+
T Consensus        58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD  137 (650)
T KOG0462|consen   58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD  137 (650)
T ss_pred             hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence            4555899999999999999999986432  110           0011122222  223444557778999999999999


Q ss_pred             hhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcC-CHHHHHHHHHHcCCeEE
Q 028986           96 YAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREV-PAQDGIEYAEKNGMFFI  174 (200)
Q Consensus        96 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~  174 (200)
                      |.....+.+.-||++|+|+|+++.-.-+.+..++..+    ..+..+|.|+||+|+...+.. ...++.++......+.+
T Consensus       138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAf----e~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~~i  213 (650)
T KOG0462|consen  138 FSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAF----EAGLAIIPVLNKIDLPSADPERVENQLFELFDIPPAEVI  213 (650)
T ss_pred             ccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHH----HcCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccceE
Confidence            9999999999999999999999875555555555554    335669999999999765321 12233333334455799


Q ss_pred             EecCCCCCCHHHHHHHHHHhhc
Q 028986          175 ETSAKTADNINQLFEVLITCTS  196 (200)
Q Consensus       175 ~~S~~~~~~i~~~~~~i~~~~~  196 (200)
                      .+||++|.++.++++.|++.+.
T Consensus       214 ~vSAK~G~~v~~lL~AII~rVP  235 (650)
T KOG0462|consen  214 YVSAKTGLNVEELLEAIIRRVP  235 (650)
T ss_pred             EEEeccCccHHHHHHHHHhhCC
Confidence            9999999999999999999875

>PLN03127 Elongation factor Tu; Provisional

Probab=99.69  E-value=1.3e-15  Score=121.39  Aligned_cols=165  Identities=12%  Similarity=0.111  Sum_probs=100.8

Q ss_pred             CCCCCceeeEEEEcCCCCcHHHHHHHHHcC------CCCCC--------CccccceeEEEEEEEecCCcEEEEEEEeCCC
Q 028986           27 SDAKNLRVKLVLLGDSGVGKSCIVLRFVRG------QFDPT--------SKVTVGASFLSQTIALQDSTTVKFEIWDTAG   92 (200)
Q Consensus        27 ~~~~~~~~~i~i~G~~~sGKSsli~~l~~~------~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g   92 (200)
                      ....+..++|+++|+.++|||||+++|.+.      .....        .....+.+.......+.... .++.++||||
T Consensus        55 ~~~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~-~~i~~iDtPG  133 (447)
T PLN03127         55 FTRTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAK-RHYAHVDCPG  133 (447)
T ss_pred             hhcCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCC-eEEEEEECCC
Confidence            345577899999999999999999999731      10000        00111222222223333322 5789999999


Q ss_pred             hhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCe-EEEEEeCCCCCCCCcCCH---HHHHHHHHH
Q 028986           93 QERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIV-MALVGNKADLHEKREVPA---QDGIEYAEK  168 (200)
Q Consensus        93 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~iiv~nK~D~~~~~~~~~---~~~~~~~~~  168 (200)
                      +..+..........+|++++|+|+..... ......+..+...   ++| +++++||+|+....+...   +++.++...
T Consensus       134 h~~f~~~~~~g~~~aD~allVVda~~g~~-~qt~e~l~~~~~~---gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~  209 (447)
T PLN03127        134 HADYVKNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQV---GVPSLVVFLNKVDVVDDEELLELVEMELRELLSF  209 (447)
T ss_pred             ccchHHHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHHHHc---CCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHH
Confidence            98776666566677999999999986532 2223333334333   577 578899999865322111   122233322


Q ss_pred             c-----CCeEEEecCC---CCCC-------HHHHHHHHHHhhc
Q 028986          169 N-----GMFFIETSAK---TADN-------INQLFEVLITCTS  196 (200)
Q Consensus       169 ~-----~~~~~~~S~~---~~~~-------i~~~~~~i~~~~~  196 (200)
                      .     .++++++|+.   ++.|       +.++++.|.+.+.
T Consensus       210 ~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp  252 (447)
T PLN03127        210 YKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP  252 (447)
T ss_pred             hCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence            2     3678888875   4444       7788888877653

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.69  E-value=1.1e-15  Score=121.91  Aligned_cols=151  Identities=17%  Similarity=0.193  Sum_probs=98.2

Q ss_pred             CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCC-----------------------------CccccceeEEEEEEEecCC
Q 028986           30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPT-----------------------------SKVTVGASFLSQTIALQDS   80 (200)
Q Consensus        30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~   80 (200)
                      .+..++|+++|+.++|||||+-+|+...-...                             .....+.+.......+ ..
T Consensus         4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~-~~   82 (447)
T PLN00043          4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKF-ET   82 (447)
T ss_pred             CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEe-cC
Confidence            46678999999999999999998875211000                             0000111111111222 22


Q ss_pred             cEEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHHhHH-------HHHHHHHHHHHcCCCCC-eEEEEEeCCCCC
Q 028986           81 TTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFN-------KAQYWVKELQKHGSPDI-VMALVGNKADLH  152 (200)
Q Consensus        81 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~-------~~~~~~~~i~~~~~~~~-p~iiv~nK~D~~  152 (200)
                      ....+.++|+||+++|.......+..+|++|+|+|+.+. .++       .....+..+.   ..++ ++++++||+|+.
T Consensus        83 ~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~---~~gi~~iIV~vNKmD~~  158 (447)
T PLN00043         83 TKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAF---TLGVKQMICCCNKMDAT  158 (447)
T ss_pred             CCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHH---HcCCCcEEEEEEcccCC
Confidence            336899999999999999888889999999999999873 121       2233323332   2355 478889999975


Q ss_pred             CCC--c----CCHHHHHHHHHHcC-----CeEEEecCCCCCCHH
Q 028986          153 EKR--E----VPAQDGIEYAEKNG-----MFFIETSAKTADNIN  185 (200)
Q Consensus       153 ~~~--~----~~~~~~~~~~~~~~-----~~~~~~S~~~~~~i~  185 (200)
                      ...  .    ...+++..++...+     ++++++|+.+|.|+.
T Consensus       159 ~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~  202 (447)
T PLN00043        159 TPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMI  202 (447)
T ss_pred             chhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEecccccccc
Confidence            211  0    11345556666555     679999999999985

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.69  E-value=2.3e-15  Score=118.57  Aligned_cols=158  Identities=15%  Similarity=0.223  Sum_probs=114.5

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEE
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAV  111 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i  111 (200)
                      ...-|+|+|+-.-|||||+..+-.......-.-.++.+.....+.........+.++|||||+.|..++..-.+-+|+++
T Consensus         4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaI   83 (509)
T COG0532           4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAI   83 (509)
T ss_pred             CCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEE
Confidence            34568999999999999999998876655444445555555555554222246999999999999999999899999999


Q ss_pred             EEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcC---------CeEEEecCCCCC
Q 028986          112 VVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNG---------MFFIETSAKTAD  182 (200)
Q Consensus       112 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~S~~~~~  182 (200)
                      +|+++++.---+.    .+.+......++|+++.+||+|..+.+   .+....-..+++         ..++++||++|.
T Consensus        84 LVVa~dDGv~pQT----iEAI~hak~a~vP~iVAiNKiDk~~~n---p~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~  156 (509)
T COG0532          84 LVVAADDGVMPQT----IEAINHAKAAGVPIVVAINKIDKPEAN---PDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGE  156 (509)
T ss_pred             EEEEccCCcchhH----HHHHHHHHHCCCCEEEEEecccCCCCC---HHHHHHHHHHcCCCHhhcCCceEEEEeeccCCC
Confidence            9999998521111    122333335589999999999987432   222233233332         369999999999


Q ss_pred             CHHHHHHHHHHhhc
Q 028986          183 NINQLFEVLITCTS  196 (200)
Q Consensus       183 ~i~~~~~~i~~~~~  196 (200)
                      |+++++..|+-+.+
T Consensus       157 Gi~eLL~~ill~ae  170 (509)
T COG0532         157 GIDELLELILLLAE  170 (509)
T ss_pred             CHHHHHHHHHHHHH
Confidence            99999999876654

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.69  E-value=2.1e-15  Score=108.31  Aligned_cols=159  Identities=16%  Similarity=0.144  Sum_probs=96.3

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcCCCCCCCc--cccceeEEEEEEEecCCcEEEEEEEeCCChhhh-----------hhcc
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSK--VTVGASFLSQTIALQDSTTVKFEIWDTAGQERY-----------AALA  100 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-----------~~~~  100 (200)
                      ++|+++|.+|+|||||+|.+++........  ...+.......... ++  .++.++||||..+.           ....
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~-~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~   77 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVW-DG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCL   77 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEE-CC--eEEEEEECcCCCCccCChHHHHHHHHHHH
Confidence            479999999999999999999976432221  11111111122222 22  47999999994321           1112


Q ss_pred             cccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCC--CCCeEEEEEeCCCCCCCCcC------CHHHHHHHHHHcCCe
Q 028986          101 PLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGS--PDIVMALVGNKADLHEKREV------PAQDGIEYAEKNGMF  172 (200)
Q Consensus       101 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~iiv~nK~D~~~~~~~------~~~~~~~~~~~~~~~  172 (200)
                      .......|++++|+++... +- .....++.+.+...  .-.++++|+|+.|.......      .....+.+.+.++-.
T Consensus        78 ~~~~~g~~~illVi~~~~~-t~-~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r  155 (196)
T cd01852          78 SLSAPGPHAFLLVVPLGRF-TE-EEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGR  155 (196)
T ss_pred             HhcCCCCEEEEEEEECCCc-CH-HHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCe
Confidence            2234678999999998872 22 22333444443321  12468899999997553211      113445555565655


Q ss_pred             EEEec-----CCCCCCHHHHHHHHHHhhcc
Q 028986          173 FIETS-----AKTADNINQLFEVLITCTSS  197 (200)
Q Consensus       173 ~~~~S-----~~~~~~i~~~~~~i~~~~~~  197 (200)
                      ++..+     +..+.++.++++.|.+.+.+
T Consensus       156 ~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~  185 (196)
T cd01852         156 YVAFNNKAKGEEQEQQVKELLAKVESMVKE  185 (196)
T ss_pred             EEEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence            55544     44578899999999988876

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.69  E-value=5.7e-16  Score=116.02  Aligned_cols=112  Identities=14%  Similarity=0.085  Sum_probs=75.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCC------------------CCccccceeEEEEEEEecCCcEEEEEEEeCCChhhh
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQFDP------------------TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERY   96 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~   96 (200)
                      +|+|+|++++|||||+++|+......                  ..............+..  . ..++.+|||||+..+
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~--~-~~~i~liDTPG~~df   77 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFW--K-DHRINIIDTPGHVDF   77 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEE--C-CEEEEEEECCCcHHH
Confidence            58999999999999999997521110                  00111111111122222  2 268999999999888


Q ss_pred             hhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCC
Q 028986           97 AALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE  153 (200)
Q Consensus        97 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~  153 (200)
                      ...+...++.+|++++|+|+.+...-.. ...+..+..   .++|+++++||+|+..
T Consensus        78 ~~~~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~---~~~p~ivviNK~D~~~  130 (270)
T cd01886          78 TIEVERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQADR---YNVPRIAFVNKMDRTG  130 (270)
T ss_pred             HHHHHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECCCCCC
Confidence            8888889999999999999987532221 233344433   3678999999999864

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.69  E-value=3.5e-16  Score=125.68  Aligned_cols=153  Identities=18%  Similarity=0.148  Sum_probs=94.3

Q ss_pred             CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCC-------------c--------------------cccceeEEEEEE
Q 028986           29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTS-------------K--------------------VTVGASFLSQTI   75 (200)
Q Consensus        29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~-------------~--------------------~~~~~~~~~~~~   75 (200)
                      ..+..++|+|+|+.++|||||+.+|+........             .                    .....+....  
T Consensus        23 ~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~--  100 (474)
T PRK05124         23 QHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYR--  100 (474)
T ss_pred             cccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEE--
Confidence            4567799999999999999999999864321110             0                    0001111111  


Q ss_pred             EecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCC
Q 028986           76 ALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKR  155 (200)
Q Consensus        76 ~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~  155 (200)
                      .+ .....++.++||||++.+.......+..+|++++|+|+.....-.... .+..+....  ..|+++++||+|+....
T Consensus       101 ~~-~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~-~~~l~~~lg--~~~iIvvvNKiD~~~~~  176 (474)
T PRK05124        101 YF-STEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRR-HSFIATLLG--IKHLVVAVNKMDLVDYS  176 (474)
T ss_pred             Ee-ccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchH-HHHHHHHhC--CCceEEEEEeeccccch
Confidence            12 122257899999999888765555678999999999998652111111 111222221  24688999999986432


Q ss_pred             cCCHHHHH----HHHHHc----CCeEEEecCCCCCCHHHH
Q 028986          156 EVPAQDGI----EYAEKN----GMFFIETSAKTADNINQL  187 (200)
Q Consensus       156 ~~~~~~~~----~~~~~~----~~~~~~~S~~~~~~i~~~  187 (200)
                      +...+++.    .+....    .++++++|+++|.|+.+.
T Consensus       177 ~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~  216 (474)
T PRK05124        177 EEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ  216 (474)
T ss_pred             hHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence            21122222    222332    367999999999998764

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.69  E-value=1.3e-16  Score=119.91  Aligned_cols=142  Identities=17%  Similarity=0.144  Sum_probs=87.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCCCCcc------------------ccceeEEEEEEEecCCcEEEEEEEeCCChhhh
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKV------------------TVGASFLSQTIALQDSTTVKFEIWDTAGQERY   96 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~   96 (200)
                      +|+++|++|+|||||+++|+..........                  ..........+..   ...++.+|||||+..+
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~---~~~~i~liDtPG~~~f   77 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEW---KGHKINLIDTPGYADF   77 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEE---CCEEEEEEECcCHHHH
Confidence            589999999999999999986321110000                  0001111112222   2268999999999888


Q ss_pred             hhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeE--E
Q 028986           97 AALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFF--I  174 (200)
Q Consensus        97 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~--~  174 (200)
                      ...+..++..+|++++|+|+++........ .+..+.   ..++|.++++||+|+....  ..+....+...++.++  +
T Consensus        78 ~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~-~~~~~~---~~~~p~iivvNK~D~~~~~--~~~~~~~l~~~~~~~~~~~  151 (268)
T cd04170          78 VGETRAALRAADAALVVVSAQSGVEVGTEK-LWEFAD---EAGIPRIIFINKMDRERAD--FDKTLAALQEAFGRPVVPL  151 (268)
T ss_pred             HHHHHHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHH---HcCCCEEEEEECCccCCCC--HHHHHHHHHHHhCCCeEEE
Confidence            878888899999999999999864443322 223333   3368899999999986542  1233334434445443  3


Q ss_pred             EecCCCCCCHH
Q 028986          175 ETSAKTADNIN  185 (200)
Q Consensus       175 ~~S~~~~~~i~  185 (200)
                      .+..+++.++.
T Consensus       152 ~ip~~~~~~~~  162 (268)
T cd04170         152 QLPIGEGDDFK  162 (268)
T ss_pred             EecccCCCcee
Confidence            44455554443

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.68  E-value=1.5e-15  Score=113.42  Aligned_cols=161  Identities=19%  Similarity=0.129  Sum_probs=103.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhh----hhhccccc---ccCcc
Q 028986           36 LVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQER----YAALAPLY---YRGAA  108 (200)
Q Consensus        36 i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----~~~~~~~~---~~~~d  108 (200)
                      |.++|.|++|||||++.+...+-..-.++..+.....-.+.....  -.+.+-|+||.-+    -..+-..|   +..+.
T Consensus       162 VGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~--~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~  239 (369)
T COG0536         162 VGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGG--ESFVVADIPGLIEGASEGVGLGLRFLRHIERTR  239 (369)
T ss_pred             cccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCC--CcEEEecCcccccccccCCCccHHHHHHHHhhh
Confidence            459999999999999999987644333333333322333333222  3689999999321    11122222   34588


Q ss_pred             EEEEEEeCCCHH---hHHHHHHHHHHHHHcC--CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEE-EecCCCCC
Q 028986          109 VAVVVYDITSPD---SFNKAQYWVKELQKHG--SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFI-ETSAKTAD  182 (200)
Q Consensus       109 ~~i~v~d~~~~~---s~~~~~~~~~~i~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~S~~~~~  182 (200)
                      +++.|+|++..+   ..+.......++..+.  ..+.|.++|+||+|+....+...+....+.+..+...+ ++|+.++.
T Consensus       240 vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~~  319 (369)
T COG0536         240 VLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALTRE  319 (369)
T ss_pred             eeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhccc
Confidence            999999999543   2444444445554432  45788999999999766544434444444444454422 29999999


Q ss_pred             CHHHHHHHHHHhhccc
Q 028986          183 NINQLFEVLITCTSSY  198 (200)
Q Consensus       183 ~i~~~~~~i~~~~~~~  198 (200)
                      |++++...+.+.+.+.
T Consensus       320 g~~~L~~~~~~~l~~~  335 (369)
T COG0536         320 GLDELLRALAELLEET  335 (369)
T ss_pred             CHHHHHHHHHHHHHHh
Confidence            9999999998887764

>PRK09866 hypothetical protein; Provisional

Probab=99.68  E-value=4.9e-15  Score=119.66  Aligned_cols=108  Identities=14%  Similarity=0.101  Sum_probs=72.9

Q ss_pred             EEEEEeCCChhh-----hhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCC
Q 028986           84 KFEIWDTAGQER-----YAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVP  158 (200)
Q Consensus        84 ~~~l~D~~g~~~-----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~  158 (200)
                      ++.++||||...     ........+..+|+++||+|+....+... ..+.+.+... ....|+++|+||+|+.......
T Consensus       231 QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~-~K~~PVILVVNKIDl~dreedd  308 (741)
T PRK09866        231 QLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAV-GQSVPLYVLVNKFDQQDRNSDD  308 (741)
T ss_pred             CEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhc-CCCCCEEEEEEcccCCCcccch
Confidence            678999999532     22333446889999999999987432222 2344445443 2235899999999986433323


Q ss_pred             HHHHHHHHHH----c---CCeEEEecCCCCCCHHHHHHHHHH
Q 028986          159 AQDGIEYAEK----N---GMFFIETSAKTADNINQLFEVLIT  193 (200)
Q Consensus       159 ~~~~~~~~~~----~---~~~~~~~S~~~~~~i~~~~~~i~~  193 (200)
                      .+.+..+...    .   ...++++||+.|.|++++++.|.+
T Consensus       309 kE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~  350 (741)
T PRK09866        309 ADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN  350 (741)
T ss_pred             HHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence            4444554322    1   235999999999999999999876

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.68  E-value=1.6e-16  Score=110.94  Aligned_cols=118  Identities=22%  Similarity=0.325  Sum_probs=72.4

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccc---cccCccE
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPL---YYRGAAV  109 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~---~~~~~d~  109 (200)
                      .-.|+++|+.|+|||+|+..|..+...+...+. .....   ..+.......+.++|+||+++.+.....   +...+.+
T Consensus         3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~~---~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~   78 (181)
T PF09439_consen    3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNIA---YNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKG   78 (181)
T ss_dssp             --EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEEE---CCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEE
T ss_pred             CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCce---EEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCE
Confidence            346999999999999999999998654444332 22221   1122222247899999999877653333   4778999


Q ss_pred             EEEEEeCCC-HHhHHHH-HHHHHHHHHc--CCCCCeEEEEEeCCCCCCC
Q 028986          110 AVVVYDITS-PDSFNKA-QYWVKELQKH--GSPDIVMALVGNKADLHEK  154 (200)
Q Consensus       110 ~i~v~d~~~-~~s~~~~-~~~~~~i~~~--~~~~~p~iiv~nK~D~~~~  154 (200)
                      +|||+|.+. ......+ +.++..+...  ....+|++|++||.|+...
T Consensus        79 IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A  127 (181)
T PF09439_consen   79 IIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA  127 (181)
T ss_dssp             EEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred             EEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence            999999985 3344444 4444444332  2568999999999999764

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.68  E-value=2.6e-15  Score=98.91  Aligned_cols=105  Identities=19%  Similarity=0.268  Sum_probs=66.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCCCC-ccccceeEEEEEEEecCCcEEEEEEEeCCChhh----------hhhccccc
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQFDPTS-KVTVGASFLSQTIALQDSTTVKFEIWDTAGQER----------YAALAPLY  103 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----------~~~~~~~~  103 (200)
                      +|+|+|.+|+|||||+|+|++....... .+..........+.+.+   ..+.++||||...          ....... 
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~---~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~-   76 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNN---KKFILVDTPGINDGESQDNDGKEIRKFLEQ-   76 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETT---EEEEEEESSSCSSSSHHHHHHHHHHHHHHH-
T ss_pred             CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeece---eeEEEEeCCCCcccchhhHHHHHHHHHHHH-
Confidence            6899999999999999999985432211 11122222223333322   4568999999421          1123333 


Q ss_pred             ccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeC
Q 028986          104 YRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNK  148 (200)
Q Consensus       104 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK  148 (200)
                      +..+|++++|+|.+++.. +....++..++    .+.|+++|+||
T Consensus        77 ~~~~d~ii~vv~~~~~~~-~~~~~~~~~l~----~~~~~i~v~NK  116 (116)
T PF01926_consen   77 ISKSDLIIYVVDASNPIT-EDDKNILRELK----NKKPIILVLNK  116 (116)
T ss_dssp             HCTESEEEEEEETTSHSH-HHHHHHHHHHH----TTSEEEEEEES
T ss_pred             HHHCCEEEEEEECCCCCC-HHHHHHHHHHh----cCCCEEEEEcC
Confidence            388999999999887422 23334444442    57899999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.68  E-value=7.8e-16  Score=121.78  Aligned_cols=149  Identities=23%  Similarity=0.204  Sum_probs=91.0

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcCCCCCCC-------------cc------------------ccceeEEEEEEEecCCcE
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTS-------------KV------------------TVGASFLSQTIALQDSTT   82 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~-------------~~------------------~~~~~~~~~~~~~~~~~~   82 (200)
                      ++|+|+|+.++|||||+.+|+........             ..                  ..+.+.......+.. ..
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~-~~   79 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFST-DK   79 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEcc-CC
Confidence            58999999999999999999753211100             00                  000111111111212 22


Q ss_pred             EEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCH---
Q 028986           83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPA---  159 (200)
Q Consensus        83 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~---  159 (200)
                      .++.++||||++.+.......+..+|++++|+|+.....-.. ...+..+....  ..++++++||+|+........   
T Consensus        80 ~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt-~~~~~~~~~~~--~~~iivviNK~D~~~~~~~~~~~i  156 (406)
T TIGR02034        80 RKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQT-RRHSYIASLLG--IRHVVLAVNKMDLVDYDEEVFENI  156 (406)
T ss_pred             eEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcccc-HHHHHHHHHcC--CCcEEEEEEecccccchHHHHHHH
Confidence            589999999999887666677889999999999986532111 11222222221  235889999999864322111   


Q ss_pred             -HHHHHHHHHcC---CeEEEecCCCCCCHHH
Q 028986          160 -QDGIEYAEKNG---MFFIETSAKTADNINQ  186 (200)
Q Consensus       160 -~~~~~~~~~~~---~~~~~~S~~~~~~i~~  186 (200)
                       ++...+....+   ++++++|+++|.|+.+
T Consensus       157 ~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~  187 (406)
T TIGR02034       157 KKDYLAFAEQLGFRDVTFIPLSALKGDNVVS  187 (406)
T ss_pred             HHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence             22222333333   4699999999999875

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.67  E-value=1.6e-15  Score=121.09  Aligned_cols=153  Identities=18%  Similarity=0.163  Sum_probs=95.7

Q ss_pred             CCceeeEEEEcCCCCcHHHHHHHHHcCCC--CC-------------------------C--CccccceeEEEEEEEecCC
Q 028986           30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQF--DP-------------------------T--SKVTVGASFLSQTIALQDS   80 (200)
Q Consensus        30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~--~~-------------------------~--~~~~~~~~~~~~~~~~~~~   80 (200)
                      .++.++|+++|+.++|||||+.+|+...-  ..                         .  .....+.+.......+ ..
T Consensus         4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~-~~   82 (446)
T PTZ00141          4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKF-ET   82 (446)
T ss_pred             CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEE-cc
Confidence            46678999999999999999999976211  00                         0  0001111111111222 22


Q ss_pred             cEEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHHh---H---HHHHHHHHHHHHcCCCCCe-EEEEEeCCCCCC
Q 028986           81 TTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDS---F---NKAQYWVKELQKHGSPDIV-MALVGNKADLHE  153 (200)
Q Consensus        81 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~p-~iiv~nK~D~~~  153 (200)
                      ....+.++|+||+.+|.......+..+|++++|+|+.....   +   ......+..+..   .++| +++++||+|...
T Consensus        83 ~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~---~gi~~iiv~vNKmD~~~  159 (446)
T PTZ00141         83 PKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT---LGVKQMIVCINKMDDKT  159 (446)
T ss_pred             CCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH---cCCCeEEEEEEcccccc
Confidence            33689999999999998888888899999999999987521   1   122223333333   2555 678999999532


Q ss_pred             --CCcCCH----HHHHHHHHHc-----CCeEEEecCCCCCCHHH
Q 028986          154 --KREVPA----QDGIEYAEKN-----GMFFIETSAKTADNINQ  186 (200)
Q Consensus       154 --~~~~~~----~~~~~~~~~~-----~~~~~~~S~~~~~~i~~  186 (200)
                        ..+...    +++..+....     +++++++|+.+|.|+.+
T Consensus       160 ~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        160 VNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             chhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence              111112    2333333332     36799999999999863

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.66  E-value=2.8e-15  Score=114.32  Aligned_cols=158  Identities=20%  Similarity=0.254  Sum_probs=95.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCCCCC------CCccccceeEEEEE---------------EEecCCcEEEEEEEeCCCh-
Q 028986           36 LVLLGDSGVGKSCIVLRFVRGQFDP------TSKVTVGASFLSQT---------------IALQDSTTVKFEIWDTAGQ-   93 (200)
Q Consensus        36 i~i~G~~~sGKSsli~~l~~~~~~~------~~~~~~~~~~~~~~---------------~~~~~~~~~~~~l~D~~g~-   93 (200)
                      |+++|.|+||||||+|+|++.....      ...++.+..+....               ........+.+++||+||. 
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv   80 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV   80 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence            5799999999999999999976431      11222222221110               0011123368999999996 


Q ss_pred             ---hhhhhcccc---cccCccEEEEEEeCCC---------------H-HhHHHH----HHH-HHH---------------
Q 028986           94 ---ERYAALAPL---YYRGAAVAVVVYDITS---------------P-DSFNKA----QYW-VKE---------------  131 (200)
Q Consensus        94 ---~~~~~~~~~---~~~~~d~~i~v~d~~~---------------~-~s~~~~----~~~-~~~---------------  131 (200)
                         ++...+...   .++++|++++|+|++.               + +.++.+    ..| +..               
T Consensus        81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~~~~  160 (318)
T cd01899          81 PGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKADAE  160 (318)
T ss_pred             CCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence               334443334   4889999999999973               1 112111    111 000               


Q ss_pred             -------------------------HHHc---------------------CCCCCeEEEEEeCCCCCCCCcCCHHHHHHH
Q 028986          132 -------------------------LQKH---------------------GSPDIVMALVGNKADLHEKREVPAQDGIEY  165 (200)
Q Consensus       132 -------------------------i~~~---------------------~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~  165 (200)
                                               +.+.                     .....|+++|+||.|+....+    ....+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~~~----~~~~l  236 (318)
T cd01899         161 KTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDAEN----NISKL  236 (318)
T ss_pred             CccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccChHH----HHHHH
Confidence                                     0000                     022479999999999743322    11122


Q ss_pred             HHHc-CCeEEEecCCCCCCHHHHHH-HHHHhhcc
Q 028986          166 AEKN-GMFFIETSAKTADNINQLFE-VLITCTSS  197 (200)
Q Consensus       166 ~~~~-~~~~~~~S~~~~~~i~~~~~-~i~~~~~~  197 (200)
                      .... ...++.+||+.+.++.++.+ .+.+.+.+
T Consensus       237 ~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe  270 (318)
T cd01899         237 RLKYPDEIVVPTSAEAELALRRAAKQGLIKYDPG  270 (318)
T ss_pred             HhhCCCCeEEEEeCcccccHHHHHHhhHHHhCCC
Confidence            2222 45799999999999999997 58888754

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>KOG3905 consensus Dynein light intermediate chain [Cell motility]

Probab=99.65  E-value=1.9e-14  Score=106.83  Aligned_cols=164  Identities=20%  Similarity=0.329  Sum_probs=124.0

Q ss_pred             CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCC-cEEEEEEEeCCChhhhhhcccccccCc
Q 028986           29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDS-TTVKFEIWDTAGQERYAALAPLYYRGA  107 (200)
Q Consensus        29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~D~~g~~~~~~~~~~~~~~~  107 (200)
                      +-..--+|+|+|..++||||||.+|.+.+   ...+..+..|.+..+...+. ...++.+|-..|......+..+.+...
T Consensus        48 klpsgk~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~at  124 (473)
T KOG3905|consen   48 KLPSGKNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPAT  124 (473)
T ss_pred             cCCCCCeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhccccc
Confidence            33445589999999999999999999954   45566777777777665443 336788999999877666666665543


Q ss_pred             ----cEEEEEEeCCCHH-hHHHHHHHHHHHHHc-----------------------------------------------
Q 028986          108 ----AVAVVVYDITSPD-SFNKAQYWVKELQKH-----------------------------------------------  135 (200)
Q Consensus       108 ----d~~i~v~d~~~~~-s~~~~~~~~~~i~~~-----------------------------------------------  135 (200)
                          ..+|++.|++++. -++.+++|...+.++                                               
T Consensus       125 s~aetlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~  204 (473)
T KOG3905|consen  125 SLAETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSA  204 (473)
T ss_pred             CccceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcc
Confidence                3789999999994 447888888755442                                               


Q ss_pred             --------------CCCCCeEEEEEeCCCCC----CCCcCC-------HHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Q 028986          136 --------------GSPDIVMALVGNKADLH----EKREVP-------AQDGIEYAEKNGMFFIETSAKTADNINQLFEV  190 (200)
Q Consensus       136 --------------~~~~~p~iiv~nK~D~~----~~~~~~-------~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~  190 (200)
                                    .+.++|+++|++|+|..    ...+..       ...+++||..+|..++++|+++..|++-++.+
T Consensus       205 de~~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKY  284 (473)
T KOG3905|consen  205 DEHVLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKY  284 (473)
T ss_pred             ccccccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHH
Confidence                          12368999999999983    222222       23456788899999999999999999999999


Q ss_pred             HHHhh
Q 028986          191 LITCT  195 (200)
Q Consensus       191 i~~~~  195 (200)
                      |.+..
T Consensus       285 ivhr~  289 (473)
T KOG3905|consen  285 IVHRS  289 (473)
T ss_pred             HHHHh
Confidence            98865

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.65  E-value=8e-15  Score=113.71  Aligned_cols=159  Identities=18%  Similarity=0.153  Sum_probs=117.1

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHcCCC-----------------CCCCccccceeEEEEEEEecCCcEEEEEEEeCCChh
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVRGQF-----------------DPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE   94 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~   94 (200)
                      +--|..|+.+-.=|||||..+|+....                 ......|+............++..+.++++|||||-
T Consensus         8 ~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHV   87 (603)
T COG0481           8 NIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV   87 (603)
T ss_pred             hccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCcc
Confidence            334788999999999999999976321                 111222222223233334456777999999999999


Q ss_pred             hhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCC---
Q 028986           95 RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGM---  171 (200)
Q Consensus        95 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~---  171 (200)
                      ++.-...+.+..|.+.++++|+++.-.-+.+...+..+.    .+.-++.|+||+|+.....  .....+.-.-.|+   
T Consensus        88 DFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle----~~LeIiPViNKIDLP~Adp--ervk~eIe~~iGid~~  161 (603)
T COG0481          88 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NNLEIIPVLNKIDLPAADP--ERVKQEIEDIIGIDAS  161 (603)
T ss_pred             ceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH----cCcEEEEeeecccCCCCCH--HHHHHHHHHHhCCCcc
Confidence            888888888999999999999999866677777766663    3666999999999976533  2223333334555   


Q ss_pred             eEEEecCCCCCCHHHHHHHHHHhhc
Q 028986          172 FFIETSAKTADNINQLFEVLITCTS  196 (200)
Q Consensus       172 ~~~~~S~~~~~~i~~~~~~i~~~~~  196 (200)
                      ..+.+|||+|.|++++++.|++.+.
T Consensus       162 dav~~SAKtG~gI~~iLe~Iv~~iP  186 (603)
T COG0481         162 DAVLVSAKTGIGIEDVLEAIVEKIP  186 (603)
T ss_pred             hheeEecccCCCHHHHHHHHHhhCC
Confidence            3799999999999999999998875

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.64  E-value=5e-15  Score=123.31  Aligned_cols=154  Identities=21%  Similarity=0.165  Sum_probs=93.4

Q ss_pred             CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCc------------cc-------------------cceeEEEEEEEe
Q 028986           29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSK------------VT-------------------VGASFLSQTIAL   77 (200)
Q Consensus        29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~------------~~-------------------~~~~~~~~~~~~   77 (200)
                      .....++|+|+|++++|||||+++|+.........            .+                   .+.+.......+
T Consensus        20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~   99 (632)
T PRK05506         20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF   99 (632)
T ss_pred             cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence            44566899999999999999999998743211100            00                   000000111111


Q ss_pred             cCCcEEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcC
Q 028986           78 QDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREV  157 (200)
Q Consensus        78 ~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~  157 (200)
                      .. ...++.++||||++.+.......+..+|++++|+|+.....-.. ...+..+....  ..++++++||+|+....+.
T Consensus       100 ~~-~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t-~e~~~~~~~~~--~~~iivvvNK~D~~~~~~~  175 (632)
T PRK05506        100 AT-PKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQT-RRHSFIASLLG--IRHVVLAVNKMDLVDYDQE  175 (632)
T ss_pred             cc-CCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccC-HHHHHHHHHhC--CCeEEEEEEecccccchhH
Confidence            11 22578899999998877666667889999999999976532111 11222222221  2568899999998642221


Q ss_pred             CHH----HHHHHHHHcC---CeEEEecCCCCCCHHH
Q 028986          158 PAQ----DGIEYAEKNG---MFFIETSAKTADNINQ  186 (200)
Q Consensus       158 ~~~----~~~~~~~~~~---~~~~~~S~~~~~~i~~  186 (200)
                      ..+    ++.++....+   ++++++|+++|.|+.+
T Consensus       176 ~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        176 VFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             HHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence            111    2223333444   4699999999999874

>PRK13351 elongation factor G; Reviewed

Probab=99.64  E-value=1.5e-14  Score=121.72  Aligned_cols=113  Identities=17%  Similarity=0.157  Sum_probs=79.6

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHcCCCCC--------------------CCccccceeEEEEEEEecCCcEEEEEEEeCC
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDP--------------------TSKVTVGASFLSQTIALQDSTTVKFEIWDTA   91 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~   91 (200)
                      ...+|+|+|+.++|||||+++|+......                    ....+..  .....+..   ...++.+||||
T Consensus         7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~--~~~~~~~~---~~~~i~liDtP   81 (687)
T PRK13351          7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIE--SAATSCDW---DNHRINLIDTP   81 (687)
T ss_pred             cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcc--cceEEEEE---CCEEEEEEECC
Confidence            45699999999999999999998632100                    0011111  11112222   23689999999


Q ss_pred             ChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCC
Q 028986           92 GQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE  153 (200)
Q Consensus        92 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~  153 (200)
                      |+.++...+..+++.+|++++|+|+++.........| ..+.   ..++|+++++||+|+..
T Consensus        82 G~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~---~~~~p~iiviNK~D~~~  139 (687)
T PRK13351         82 GHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQAD---RYGIPRLIFINKMDRVG  139 (687)
T ss_pred             CcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHH---hcCCCEEEEEECCCCCC
Confidence            9999888889999999999999999987655544333 3333   33688999999999863

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.63  E-value=8.5e-15  Score=116.68  Aligned_cols=166  Identities=13%  Similarity=0.121  Sum_probs=105.0

Q ss_pred             CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCC-----CccccceeEEEEE----------E---EecCC----------
Q 028986           29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPT-----SKVTVGASFLSQT----------I---ALQDS----------   80 (200)
Q Consensus        29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~-----~~~~~~~~~~~~~----------~---~~~~~----------   80 (200)
                      .+...++|.++|+-..|||||+.+|++......     ...|....+....          .   .+..+          
T Consensus        30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (460)
T PTZ00327         30 SRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGC  109 (460)
T ss_pred             cCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccc
Confidence            346778999999999999999999997432111     1111111111000          0   00000          


Q ss_pred             -----cEEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCC
Q 028986           81 -----TTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKR  155 (200)
Q Consensus        81 -----~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~  155 (200)
                           ...++.++|+||++.+.......+..+|++++|+|+..+.........+..+....  -.++++++||+|+....
T Consensus       110 ~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lg--i~~iIVvlNKiDlv~~~  187 (460)
T PTZ00327        110 GHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMK--LKHIIILQNKIDLVKEA  187 (460)
T ss_pred             cccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcC--CCcEEEEEecccccCHH
Confidence                 01368999999999988777777888999999999987421122222233332221  23688999999986432


Q ss_pred             cC--CHHHHHHHHHH---cCCeEEEecCCCCCCHHHHHHHHHHhhc
Q 028986          156 EV--PAQDGIEYAEK---NGMFFIETSAKTADNINQLFEVLITCTS  196 (200)
Q Consensus       156 ~~--~~~~~~~~~~~---~~~~~~~~S~~~~~~i~~~~~~i~~~~~  196 (200)
                      ..  ..+++.++...   .+.+++++|+++|.|++++++.|.+.+.
T Consensus       188 ~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp  233 (460)
T PTZ00327        188 QAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIP  233 (460)
T ss_pred             HHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence            21  12233333322   3668999999999999999999987654

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.63  E-value=2.9e-14  Score=112.30  Aligned_cols=157  Identities=14%  Similarity=0.151  Sum_probs=116.8

Q ss_pred             CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccE
Q 028986           30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAV  109 (200)
Q Consensus        30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~  109 (200)
                      .+.+.-|.|+|+-.=|||||+.+|-.......-.-.++.+.....+..+.|.  .+++.||||+..|..++..-..-+|+
T Consensus       150 ~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G~--~iTFLDTPGHaAF~aMRaRGA~vtDI  227 (683)
T KOG1145|consen  150 EPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSGK--SITFLDTPGHAAFSAMRARGANVTDI  227 (683)
T ss_pred             CCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCCC--EEEEecCCcHHHHHHHHhccCccccE
Confidence            3466679999999999999999999876655444445555556666777664  79999999999999999999999999


Q ss_pred             EEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHc---------CCeEEEecCCC
Q 028986          110 AVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKN---------GMFFIETSAKT  180 (200)
Q Consensus       110 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~---------~~~~~~~S~~~  180 (200)
                      +++|+.+.+.---+    -.+.|......++|+++.+||+|..+..   .+...+-...+         ++.++++||++
T Consensus       228 vVLVVAadDGVmpQ----T~EaIkhAk~A~VpiVvAinKiDkp~a~---pekv~~eL~~~gi~~E~~GGdVQvipiSAl~  300 (683)
T KOG1145|consen  228 VVLVVAADDGVMPQ----TLEAIKHAKSANVPIVVAINKIDKPGAN---PEKVKRELLSQGIVVEDLGGDVQVIPISALT  300 (683)
T ss_pred             EEEEEEccCCccHh----HHHHHHHHHhcCCCEEEEEeccCCCCCC---HHHHHHHHHHcCccHHHcCCceeEEEeeccc
Confidence            99999998752111    2223444446689999999999976432   23333322222         34689999999


Q ss_pred             CCCHHHHHHHHHHhh
Q 028986          181 ADNINQLFEVLITCT  195 (200)
Q Consensus       181 ~~~i~~~~~~i~~~~  195 (200)
                      |.|++.+-+.++-+.
T Consensus       301 g~nl~~L~eaill~A  315 (683)
T KOG1145|consen  301 GENLDLLEEAILLLA  315 (683)
T ss_pred             CCChHHHHHHHHHHH
Confidence            999999988877654

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.62  E-value=3e-15  Score=116.42  Aligned_cols=163  Identities=21%  Similarity=0.207  Sum_probs=103.9

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhh-hh--------hccc
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQER-YA--------ALAP  101 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-~~--------~~~~  101 (200)
                      +..++|+|+|+||+|||||+|+|.+.+.....+ ..+++.......+. -..+++.+.||+|..+ ..        ....
T Consensus       266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSp-v~GTTRDaiea~v~-~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~  343 (531)
T KOG1191|consen  266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVSP-VPGTTRDAIEAQVT-VNGVPVRLSDTAGIREESNDGIEALGIERAR  343 (531)
T ss_pred             hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCC-CCCcchhhheeEee-cCCeEEEEEeccccccccCChhHHHhHHHHH
Confidence            456899999999999999999999987655443 33444334443332 2226899999999543 11        1223


Q ss_pred             ccccCccEEEEEEeCC--CHHhHHHHHHHHHHHHHcC------CCCCeEEEEEeCCCCCCC-CcCCHHHHHHHHH--Hc-
Q 028986          102 LYYRGAAVAVVVYDIT--SPDSFNKAQYWVKELQKHG------SPDIVMALVGNKADLHEK-REVPAQDGIEYAE--KN-  169 (200)
Q Consensus       102 ~~~~~~d~~i~v~d~~--~~~s~~~~~~~~~~i~~~~------~~~~p~iiv~nK~D~~~~-~~~~~~~~~~~~~--~~-  169 (200)
                      ..+..+|++++|+|+.  .-++...+...+.......      ....|++++.||.|+... .+..... ..+..  .. 
T Consensus       344 k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~-~~~~~~~~~~  422 (531)
T KOG1191|consen  344 KRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIP-VVYPSAEGRS  422 (531)
T ss_pred             HHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCc-eeccccccCc
Confidence            4467899999999993  3333333333444332221      234789999999999665 1111100 11111  11 


Q ss_pred             CC-eEEEecCCCCCCHHHHHHHHHHhhc
Q 028986          170 GM-FFIETSAKTADNINQLFEVLITCTS  196 (200)
Q Consensus       170 ~~-~~~~~S~~~~~~i~~~~~~i~~~~~  196 (200)
                      .. ...++|+++++++.++...|.+.+.
T Consensus       423 ~~~i~~~vs~~tkeg~~~L~~all~~~~  450 (531)
T KOG1191|consen  423 VFPIVVEVSCTTKEGCERLSTALLNIVE  450 (531)
T ss_pred             ccceEEEeeechhhhHHHHHHHHHHHHH
Confidence            12 3566999999999999999888764

>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.62  E-value=2.9e-15  Score=100.62  Aligned_cols=156  Identities=15%  Similarity=0.175  Sum_probs=113.8

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEE
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAV  111 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i  111 (200)
                      +.=|++++|--|+|||||++.|..+....+ .||.-.  +.....+.+   ++++-+|.+|+-..+..|..++..+|+++
T Consensus        19 K~gKllFlGLDNAGKTTLLHMLKdDrl~qh-vPTlHP--TSE~l~Ig~---m~ftt~DLGGH~qArr~wkdyf~~v~~iv   92 (193)
T KOG0077|consen   19 KFGKLLFLGLDNAGKTTLLHMLKDDRLGQH-VPTLHP--TSEELSIGG---MTFTTFDLGGHLQARRVWKDYFPQVDAIV   92 (193)
T ss_pred             cCceEEEEeecCCchhhHHHHHcccccccc-CCCcCC--ChHHheecC---ceEEEEccccHHHHHHHHHHHHhhhceeE
Confidence            445899999999999999999998764322 222222  122223322   68999999999999999999999999999


Q ss_pred             EEEeCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCcCCHHHHHHH------HHHc--------C---CeE
Q 028986          112 VVYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEY------AEKN--------G---MFF  173 (200)
Q Consensus       112 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~------~~~~--------~---~~~  173 (200)
                      +.+|+.+.+-+.+.+..++.+.... -..+|+++.+||+|.....  +.++.+-.      +...        +   +.+
T Consensus        93 ~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~--se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~ev  170 (193)
T KOG0077|consen   93 YLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA--SEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEV  170 (193)
T ss_pred             eeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc--cHHHHHHHHHHHHHhcccccccccCCCCCeEEE
Confidence            9999999998988877777655432 4689999999999986653  33333321      1111        1   136


Q ss_pred             EEecCCCCCCHHHHHHHHHHhh
Q 028986          174 IETSAKTADNINQLFEVLITCT  195 (200)
Q Consensus       174 ~~~S~~~~~~i~~~~~~i~~~~  195 (200)
                      +.||...+.+.-+.|.|+.+.+
T Consensus       171 fmcsi~~~~gy~e~fkwl~qyi  192 (193)
T KOG0077|consen  171 FMCSIVRKMGYGEGFKWLSQYI  192 (193)
T ss_pred             EEEEEEccCccceeeeehhhhc
Confidence            7889888888888888876654

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=99.60  E-value=7e-14  Score=111.28  Aligned_cols=163  Identities=20%  Similarity=0.352  Sum_probs=119.6

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCC-cEEEEEEEeCCChhhhhhcccccccCc---
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDS-TTVKFEIWDTAGQERYAALAPLYYRGA---  107 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~D~~g~~~~~~~~~~~~~~~---  107 (200)
                      ..-.|+|+|..++|||||+.+|.+.+   ...++.+.+|.+..+...+. ...++.+|...|...+..+....+...   
T Consensus        24 ~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~  100 (472)
T PF05783_consen   24 SEKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLP  100 (472)
T ss_pred             CCceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCccccc
Confidence            34579999999999999999998743   34456677777776654433 335789999988777777776666532   


Q ss_pred             -cEEEEEEeCCCHHhH-HHHHHHHHHHHHc--------------------------------------------------
Q 028986          108 -AVAVVVYDITSPDSF-NKAQYWVKELQKH--------------------------------------------------  135 (200)
Q Consensus       108 -d~~i~v~d~~~~~s~-~~~~~~~~~i~~~--------------------------------------------------  135 (200)
                       -++++|+|.+.|..+ +.+..|+..++.+                                                  
T Consensus       101 ~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~  180 (472)
T PF05783_consen  101 NTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDE  180 (472)
T ss_pred             ceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccccccc
Confidence             488999999999655 6777777633321                                                  


Q ss_pred             ------------CCCCCeEEEEEeCCCCCCC----Cc-------CCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Q 028986          136 ------------GSPDIVMALVGNKADLHEK----RE-------VPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI  192 (200)
Q Consensus       136 ------------~~~~~p~iiv~nK~D~~~~----~~-------~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~  192 (200)
                                  .+.++|++||++|+|....    ..       .....++.+|..+|+.++++|++...+++.++++|.
T Consensus       181 ~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~  260 (472)
T PF05783_consen  181 SVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYIL  260 (472)
T ss_pred             cccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHH
Confidence                        0114899999999997321    11       112346678888999999999999999999999998


Q ss_pred             Hhhcc
Q 028986          193 TCTSS  197 (200)
Q Consensus       193 ~~~~~  197 (200)
                      +.+..
T Consensus       261 h~l~~  265 (472)
T PF05783_consen  261 HRLYG  265 (472)
T ss_pred             HHhcc
Confidence            87654

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.60  E-value=9.3e-15  Score=102.31  Aligned_cols=155  Identities=21%  Similarity=0.236  Sum_probs=101.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhccccccc---CccEE
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYR---GAAVA  110 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~---~~d~~  110 (200)
                      -.|+++|+.+||||+|+-.|..+.+.....+.....   ....+.+   -.++++|.||+++.+.....+++   .+-++
T Consensus        39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiepn~---a~~r~gs---~~~~LVD~PGH~rlR~kl~e~~~~~~~akai  112 (238)
T KOG0090|consen   39 NAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEPNE---ATYRLGS---ENVTLVDLPGHSRLRRKLLEYLKHNYSAKAI  112 (238)
T ss_pred             CcEEEEecCCCCceeeeeehhcCCccCeeeeeccce---eeEeecC---cceEEEeCCCcHHHHHHHHHHccccccceeE
Confidence            469999999999999999999885544433222211   1122222   23899999999988766666655   78899


Q ss_pred             EEEEeCCC--HHhHHHHHHHHHHHHHc--CCCCCeEEEEEeCCCCCCCCc------CCHHHHHH----------------
Q 028986          111 VVVYDITS--PDSFNKAQYWVKELQKH--GSPDIVMALVGNKADLHEKRE------VPAQDGIE----------------  164 (200)
Q Consensus       111 i~v~d~~~--~~s~~~~~~~~~~i~~~--~~~~~p~iiv~nK~D~~~~~~------~~~~~~~~----------------  164 (200)
                      +||+|...  ++--+....+|..+...  +...+|+++..||.|+...+.      ..+.|+..                
T Consensus       113 VFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~  192 (238)
T KOG0090|consen  113 VFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDI  192 (238)
T ss_pred             EEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccccccc
Confidence            99999874  33223335555555544  467889999999999953211      00011110                


Q ss_pred             --------------H--HHHcCCeEEEecCCCCCCHHHHHHHHHHhh
Q 028986          165 --------------Y--AEKNGMFFIETSAKTADNINQLFEVLITCT  195 (200)
Q Consensus       165 --------------~--~~~~~~~~~~~S~~~~~~i~~~~~~i~~~~  195 (200)
                                    |  +....+.+.++|++++ +++++-+||.+.+
T Consensus       193 ~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~l  238 (238)
T KOG0090|consen  193 AKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREAL  238 (238)
T ss_pred             cccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHhC
Confidence                          1  1113456889999988 8999999987753

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.60  E-value=2.9e-14  Score=115.68  Aligned_cols=119  Identities=14%  Similarity=0.123  Sum_probs=78.8

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCC------------c--------cccceeEEEEEEEecCCcEEEEEEEeC
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTS------------K--------VTVGASFLSQTIALQDSTTVKFEIWDT   90 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~------------~--------~~~~~~~~~~~~~~~~~~~~~~~l~D~   90 (200)
                      .+.-+|+|+|+.++|||||+++|+........            .        ...+.........+.. ..+++.+|||
T Consensus         8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~-~~~~inliDT   86 (526)
T PRK00741          8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPY-RDCLINLLDT   86 (526)
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEE-CCEEEEEEEC
Confidence            45569999999999999999999742110000            0        0011112222222222 2378999999


Q ss_pred             CChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCC
Q 028986           91 AGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK  154 (200)
Q Consensus        91 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~  154 (200)
                      ||+.++......++..+|++|+|+|+.+.... ....++....   ..++|+++++||+|+...
T Consensus        87 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~---~~~iPiiv~iNK~D~~~a  146 (526)
T PRK00741         87 PGHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCR---LRDTPIFTFINKLDRDGR  146 (526)
T ss_pred             CCchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHH---hcCCCEEEEEECCccccc
Confidence            99998887777788999999999999875322 2234444333   347899999999998654

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.59  E-value=6.6e-14  Score=109.90  Aligned_cols=84  Identities=18%  Similarity=0.191  Sum_probs=53.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEE---------------------ecCCcEEEEEEEeCCC
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIA---------------------LQDSTTVKFEIWDTAG   92 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~l~D~~g   92 (200)
                      ++|+|+|.|++|||||+|+|++........+..+.+.......                     ........+++||+||
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG   81 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG   81 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence            5899999999999999999998765431111111111111111                     1112336799999999


Q ss_pred             h----hhhhhccccc---ccCccEEEEEEeCC
Q 028986           93 Q----ERYAALAPLY---YRGAAVAVVVYDIT  117 (200)
Q Consensus        93 ~----~~~~~~~~~~---~~~~d~~i~v~d~~  117 (200)
                      .    .....+...+   ++++|++++|+|+.
T Consensus        82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~  113 (396)
T PRK09602         82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS  113 (396)
T ss_pred             cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence            4    2223333344   78899999999997

>PRK12739 elongation factor G; Reviewed

Probab=99.58  E-value=1.9e-13  Score=114.86  Aligned_cols=116  Identities=16%  Similarity=0.090  Sum_probs=78.7

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCC------------------CccccceeEEEEEEEecCCcEEEEEEEeCCC
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPT------------------SKVTVGASFLSQTIALQDSTTVKFEIWDTAG   92 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g   92 (200)
                      ++..+|+|+|+.++|||||+++|+...-...                  .......+.....+...   ..++.++||||
T Consensus         6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~---~~~i~liDTPG   82 (691)
T PRK12739          6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK---GHRINIIDTPG   82 (691)
T ss_pred             cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEEC---CEEEEEEcCCC
Confidence            3456899999999999999999975211000                  01112222222233332   26899999999


Q ss_pred             hhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCC
Q 028986           93 QERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE  153 (200)
Q Consensus        93 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~  153 (200)
                      +..+...+...+..+|++++|+|+........ ...+..+..   .++|+++++||+|+..
T Consensus        83 ~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt-~~i~~~~~~---~~~p~iv~iNK~D~~~  139 (691)
T PRK12739         83 HVDFTIEVERSLRVLDGAVAVFDAVSGVEPQS-ETVWRQADK---YGVPRIVFVNKMDRIG  139 (691)
T ss_pred             HHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHH-HHHHHHHHH---cCCCEEEEEECCCCCC
Confidence            98888888888999999999999987632222 233333333   3678999999999863

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=99.57  E-value=1.5e-14  Score=92.79  Aligned_cols=137  Identities=22%  Similarity=0.218  Sum_probs=96.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChh----hhhhcccccccCccEE
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE----RYAALAPLYYRGAAVA  110 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~----~~~~~~~~~~~~~d~~  110 (200)
                      ||+++|+.|+|||||.++|.+....  +..+...++.       +.     -.+||||.-    .+..........+|++
T Consensus         3 ri~~vG~~gcGKTtL~q~L~G~~~l--ykKTQAve~~-------d~-----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi   68 (148)
T COG4917           3 RIAFVGQVGCGKTTLFQSLYGNDTL--YKKTQAVEFN-------DK-----GDIDTPGEYFEHPRWYHALITTLQDADVI   68 (148)
T ss_pred             eeEEecccccCchhHHHHhhcchhh--hcccceeecc-------Cc-----cccCCchhhhhhhHHHHHHHHHhhcccee
Confidence            7999999999999999999996432  2233333321       11     248999953    3333344456789999


Q ss_pred             EEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHH
Q 028986          111 VVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGM-FFIETSAKTADNINQLFE  189 (200)
Q Consensus       111 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~i~~~~~  189 (200)
                      ++|-.++++++.-...     +..  ....|+|-|++|.|+.++.+  .+..+++..+.|. ++|++|+.++.|++++++
T Consensus        69 ~~v~~and~~s~f~p~-----f~~--~~~k~vIgvVTK~DLaed~d--I~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~  139 (148)
T COG4917          69 IYVHAANDPESRFPPG-----FLD--IGVKKVIGVVTKADLAEDAD--ISLVKRWLREAGAEPIFETSAVDNQGVEELVD  139 (148)
T ss_pred             eeeecccCccccCCcc-----ccc--ccccceEEEEecccccchHh--HHHHHHHHHHcCCcceEEEeccCcccHHHHHH
Confidence            9999999885432211     111  12345899999999987544  4556677777777 699999999999999999


Q ss_pred             HHHHh
Q 028986          190 VLITC  194 (200)
Q Consensus       190 ~i~~~  194 (200)
                      .|...
T Consensus       140 ~L~~~  144 (148)
T COG4917         140 YLASL  144 (148)
T ss_pred             HHHhh
Confidence            88654

>TIGR00503 prfC peptide chain release factor 3

Probab=99.57  E-value=6.9e-14  Score=113.54  Aligned_cols=118  Identities=14%  Similarity=0.119  Sum_probs=78.1

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCc--------------------cccceeEEEEEEEecCCcEEEEEEEeC
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSK--------------------VTVGASFLSQTIALQDSTTVKFEIWDT   90 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~l~D~   90 (200)
                      .+..+|+|+|++++|||||+++|+.........                    ...+.........+.. ..+++.+|||
T Consensus         9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~-~~~~inliDT   87 (527)
T TIGR00503         9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPY-RDCLVNLLDT   87 (527)
T ss_pred             ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEee-CCeEEEEEEC
Confidence            456699999999999999999986421100000                    0111222222222322 2378999999


Q ss_pred             CChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCC
Q 028986           91 AGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE  153 (200)
Q Consensus        91 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~  153 (200)
                      ||+..+.......+..+|++|+|+|+++.. ......++.....   .++|+++++||+|+..
T Consensus        88 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv-~~~t~~l~~~~~~---~~~PiivviNKiD~~~  146 (527)
T TIGR00503        88 PGHEDFSEDTYRTLTAVDNCLMVIDAAKGV-ETRTRKLMEVTRL---RDTPIFTFMNKLDRDI  146 (527)
T ss_pred             CChhhHHHHHHHHHHhCCEEEEEEECCCCC-CHHHHHHHHHHHh---cCCCEEEEEECccccC
Confidence            999888776677788999999999998752 1223344443332   4689999999999854

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.56  E-value=7.3e-14  Score=107.00  Aligned_cols=154  Identities=21%  Similarity=0.216  Sum_probs=99.1

Q ss_pred             CCceeeEEEEcCCCCcHHHHHHHHHcCCC--CC---------------------------CCccccceeEEEEEEEecCC
Q 028986           30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQF--DP---------------------------TSKVTVGASFLSQTIALQDS   80 (200)
Q Consensus        30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~--~~---------------------------~~~~~~~~~~~~~~~~~~~~   80 (200)
                      .+..++++++|+..+|||||+-+|+...-  ++                           ......+.+.......+...
T Consensus         4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~   83 (428)
T COG5256           4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD   83 (428)
T ss_pred             CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC
Confidence            36788999999999999999999875321  00                           00011122222222233222


Q ss_pred             cEEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHHh---H--H-HHHHHHHHHHHcCCCCCeEEEEEeCCCCCCC
Q 028986           81 TTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDS---F--N-KAQYWVKELQKHGSPDIVMALVGNKADLHEK  154 (200)
Q Consensus        81 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~--~-~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~  154 (200)
                      . +.++++|+||+..+......-..++|+.|+|+|+++.+.   |  . ..+...-..+...  --.+|+++||+|..+.
T Consensus        84 k-~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlG--i~~lIVavNKMD~v~w  160 (428)
T COG5256          84 K-YNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLG--IKQLIVAVNKMDLVSW  160 (428)
T ss_pred             C-ceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcC--CceEEEEEEccccccc
Confidence            2 689999999999988888888889999999999998731   1  1 1122211222221  2347888999999876


Q ss_pred             CcCCHHHHHHHH----HHc-----CCeEEEecCCCCCCHHH
Q 028986          155 REVPAQDGIEYA----EKN-----GMFFIETSAKTADNINQ  186 (200)
Q Consensus       155 ~~~~~~~~~~~~----~~~-----~~~~~~~S~~~~~~i~~  186 (200)
                      .+...+++....    +..     +++|+++|+..|.|+.+
T Consensus       161 de~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~  201 (428)
T COG5256         161 DEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK  201 (428)
T ss_pred             CHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence            554444444322    222     35799999999998764

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.55  E-value=1.6e-13  Score=115.33  Aligned_cols=141  Identities=13%  Similarity=0.033  Sum_probs=88.4

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHcCCCCC-----CC-------------ccccceeEEEEEEEecCCcEEEEEEEeCCCh
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDP-----TS-------------KVTVGASFLSQTIALQDSTTVKFEIWDTAGQ   93 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~-----~~-------------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~   93 (200)
                      +--+|+|+|++++|||||+++|+......     ..             ............+...  . .++.+|||||+
T Consensus         9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~--~-~~i~liDTPG~   85 (689)
T TIGR00484         9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWK--G-HRINIIDTPGH   85 (689)
T ss_pred             cccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEEC--C-eEEEEEECCCC
Confidence            34489999999999999999997522110     00             0111112222223332  2 68999999999


Q ss_pred             hhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCC--
Q 028986           94 ERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGM--  171 (200)
Q Consensus        94 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~--  171 (200)
                      .++...+...++.+|++++|+|+.+....... .++..+..   .++|+++++||+|+....  .......+...++.  
T Consensus        86 ~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~---~~~p~ivviNK~D~~~~~--~~~~~~~i~~~l~~~~  159 (689)
T TIGR00484        86 VDFTVEVERSLRVLDGAVAVLDAVGGVQPQSE-TVWRQANR---YEVPRIAFVNKMDKTGAN--FLRVVNQIKQRLGANA  159 (689)
T ss_pred             cchhHHHHHHHHHhCEEEEEEeCCCCCChhHH-HHHHHHHH---cCCCEEEEEECCCCCCCC--HHHHHHHHHHHhCCCc
Confidence            88777788889999999999999876433322 23333333   368899999999987533  12223333333332  


Q ss_pred             --eEEEecCCCC
Q 028986          172 --FFIETSAKTA  181 (200)
Q Consensus       172 --~~~~~S~~~~  181 (200)
                        ..+++|+..+
T Consensus       160 ~~~~ipis~~~~  171 (689)
T TIGR00484       160 VPIQLPIGAEDN  171 (689)
T ss_pred             eeEEeccccCCC
Confidence              2456666554

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.53  E-value=3e-13  Score=100.07  Aligned_cols=124  Identities=17%  Similarity=0.159  Sum_probs=72.3

Q ss_pred             CCCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccce-eEEEEEEEecCCcEEEEEEEeCCChhhhh---------
Q 028986           28 DAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGA-SFLSQTIALQDSTTVKFEIWDTAGQERYA---------   97 (200)
Q Consensus        28 ~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~---------   97 (200)
                      +.....++|+|+|.+|+|||||+|+|++............. ......... ++  .++.+|||||..+..         
T Consensus        26 ~~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~-~g--~~i~vIDTPGl~~~~~~~~~~~~~  102 (249)
T cd01853          26 EELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTV-DG--FKLNIIDTPGLLESVMDQRVNRKI  102 (249)
T ss_pred             hhccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEE-CC--eEEEEEECCCcCcchhhHHHHHHH
Confidence            45577899999999999999999999997653332211111 111111111 22  578999999954321         


Q ss_pred             -hccccccc--CccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCC--CCeEEEEEeCCCCCCC
Q 028986           98 -ALAPLYYR--GAAVAVVVYDITSPDSFNKAQYWVKELQKHGSP--DIVMALVGNKADLHEK  154 (200)
Q Consensus        98 -~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~p~iiv~nK~D~~~~  154 (200)
                       .....++.  ..|+++||..++....-......+..+......  -.++++|.||+|...+
T Consensus       103 ~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p  164 (249)
T cd01853         103 LSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPP  164 (249)
T ss_pred             HHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCC
Confidence             11122332  578899988776432111112333334332211  2459999999998644

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.52  E-value=5.8e-13  Score=105.71  Aligned_cols=165  Identities=20%  Similarity=0.243  Sum_probs=122.7

Q ss_pred             CCCCCCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccc
Q 028986           25 GSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYY  104 (200)
Q Consensus        25 ~~~~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~  104 (200)
                      .++.-..+.+++.++|+.++|||.|++.+.++.+......+....+....+... +....+.+.|.+-. ....+.... 
T Consensus       417 ~~~~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~-g~~k~LiL~ei~~~-~~~~l~~ke-  493 (625)
T KOG1707|consen  417 KKKQTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVK-GQQKYLILREIGED-DQDFLTSKE-  493 (625)
T ss_pred             ccccccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeec-cccceEEEeecCcc-ccccccCcc-
Confidence            334445677899999999999999999999988877555566666666666554 54466788888754 333333333 


Q ss_pred             cCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCe-EEEecCCCCCC
Q 028986          105 RGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMF-FIETSAKTADN  183 (200)
Q Consensus       105 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~S~~~~~~  183 (200)
                      ..||+++++||.+++.++..+...++.-...  ...|+++|++|+|+.+..+...-+-.+++.+++++ .+.+|.+...+
T Consensus       494 ~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~~--~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~s  571 (625)
T KOG1707|consen  494 AACDVACLVYDSSNPRSFEYLAEVYNKYFDL--YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLSS  571 (625)
T ss_pred             ceeeeEEEecccCCchHHHHHHHHHHHhhhc--cCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCCC
Confidence            7799999999999999999887776655443  58999999999999776544333448889999884 67788875333


Q ss_pred             HHHHHHHHHHhh
Q 028986          184 INQLFEVLITCT  195 (200)
Q Consensus       184 i~~~~~~i~~~~  195 (200)
                       .++|..|..++
T Consensus       572 -~~lf~kL~~~A  582 (625)
T KOG1707|consen  572 -NELFIKLATMA  582 (625)
T ss_pred             -chHHHHHHHhh
Confidence             78888887765

>PRK12740 elongation factor G; Reviewed

Probab=99.52  E-value=5.5e-13  Score=112.09  Aligned_cols=107  Identities=18%  Similarity=0.157  Sum_probs=72.2

Q ss_pred             EcCCCCcHHHHHHHHHcCCCCCCC------------------ccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcc
Q 028986           39 LGDSGVGKSCIVLRFVRGQFDPTS------------------KVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALA  100 (200)
Q Consensus        39 ~G~~~sGKSsli~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~  100 (200)
                      +|+.++|||||+++|+........                  ............+...   .+.+.+|||||+.++...+
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~---~~~i~liDtPG~~~~~~~~   77 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWK---GHKINLIDTPGHVDFTGEV   77 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEEC---CEEEEEEECCCcHHHHHHH
Confidence            599999999999999653211000                  0111112222223332   2689999999998887778


Q ss_pred             cccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCC
Q 028986          101 PLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLH  152 (200)
Q Consensus       101 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~  152 (200)
                      ..++..+|++++++|++..........| ..+.   ..++|+++|+||+|+.
T Consensus        78 ~~~l~~aD~vllvvd~~~~~~~~~~~~~-~~~~---~~~~p~iiv~NK~D~~  125 (668)
T PRK12740         78 ERALRVLDGAVVVVCAVGGVEPQTETVW-RQAE---KYGVPRIIFVNKMDRA  125 (668)
T ss_pred             HHHHHHhCeEEEEEeCCCCcCHHHHHHH-HHHH---HcCCCEEEEEECCCCC
Confidence            8888999999999999986544433322 3333   2368899999999985

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.50  E-value=5.8e-13  Score=100.16  Aligned_cols=123  Identities=14%  Similarity=0.118  Sum_probs=70.2

Q ss_pred             CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCcc-ccceeEEEEEEEecCCcEEEEEEEeCCChhhhh-------hcc
Q 028986           29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKV-TVGASFLSQTIALQDSTTVKFEIWDTAGQERYA-------ALA  100 (200)
Q Consensus        29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-------~~~  100 (200)
                      +....++|+++|.+|+||||++|+|++......... +.+.......... +  ..++.+|||||..+..       ...
T Consensus        34 ~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~-~--G~~l~VIDTPGL~d~~~~~e~~~~~i  110 (313)
T TIGR00991        34 EDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTR-A--GFTLNIIDTPGLIEGGYINDQAVNII  110 (313)
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEE-C--CeEEEEEECCCCCchHHHHHHHHHHH
Confidence            346788999999999999999999998764322111 1111111111111 2  3689999999954221       111


Q ss_pred             cccc--cCccEEEEEEeCCCHHhHHHHHHHHHHHHHcC--CCCCeEEEEEeCCCCCCC
Q 028986          101 PLYY--RGAAVAVVVYDITSPDSFNKAQYWVKELQKHG--SPDIVMALVGNKADLHEK  154 (200)
Q Consensus       101 ~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~p~iiv~nK~D~~~~  154 (200)
                      ..++  ...|+++||.+++.....+.-...+..+....  ..-.++++++|+.|...+
T Consensus       111 k~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~p  168 (313)
T TIGR00991       111 KRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPP  168 (313)
T ss_pred             HHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCC
Confidence            2222  25899999976553211111122333333321  122458999999997644

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=99.49  E-value=5.4e-13  Score=96.89  Aligned_cols=161  Identities=17%  Similarity=0.139  Sum_probs=89.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcCCCCCCCc--cccceeEEEEEEEecCCcEEEEEEEeCCChhh-------hh----hcc
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSK--VTVGASFLSQTIALQDSTTVKFEIWDTAGQER-------YA----ALA  100 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-------~~----~~~  100 (200)
                      ++|+++|.+|+||||++|.+++........  .............. ++  ..+.++||||..+       ..    ...
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~-~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l   77 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEV-DG--RQVTVIDTPGLFDSDGSDEEIIREIKRCL   77 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEE-TT--EEEEEEE--SSEETTEEHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeee-cc--eEEEEEeCCCCCCCcccHHHHHHHHHHHH
Confidence            589999999999999999999977544332  11222222222222 33  5789999999211       11    111


Q ss_pred             cccccCccEEEEEEeCCCHH-hHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCC-------HHHHHHHHHHcCCe
Q 028986          101 PLYYRGAAVAVVVYDITSPD-SFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVP-------AQDGIEYAEKNGMF  172 (200)
Q Consensus       101 ~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~-------~~~~~~~~~~~~~~  172 (200)
                      .......|++++|+...... .......++..+... ..-..++||.|..|......+.       ......+.+..+-.
T Consensus        78 ~~~~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~-~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R  156 (212)
T PF04548_consen   78 SLCSPGPHAFLLVIPLGRFTEEDREVLELLQEIFGE-EIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGR  156 (212)
T ss_dssp             HHTTT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCG-GGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HhccCCCeEEEEEEecCcchHHHHHHHHHHHHHccH-HHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCE
Confidence            12345689999999998321 112222222222211 1123488889998876554311       12244556666777


Q ss_pred             EEEecCC------CCCCHHHHHHHHHHhhccc
Q 028986          173 FIETSAK------TADNINQLFEVLITCTSSY  198 (200)
Q Consensus       173 ~~~~S~~------~~~~i~~~~~~i~~~~~~~  198 (200)
                      |...+.+      ....+.++++.|-+.+.+.
T Consensus       157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n  188 (212)
T PF04548_consen  157 YHVFNNKTKDKEKDESQVSELLEKIEEMVQEN  188 (212)
T ss_dssp             EEECCTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEEeccccchhhhHHHHHHHHHHHHHHHHHc
Confidence            7777766      3356788888877766553

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=99.49  E-value=1e-13  Score=108.24  Aligned_cols=163  Identities=13%  Similarity=0.098  Sum_probs=111.5

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChh-----hhhhc----cc
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE-----RYAAL----AP  101 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~-----~~~~~----~~  101 (200)
                      ...-.++|+|.|++|||||+|.+..........+..+   ...-+...+..-.+++++||||.-     +.+..    ..
T Consensus       166 p~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTT---ksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsIT  242 (620)
T KOG1490|consen  166 PNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTT---KLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIIT  242 (620)
T ss_pred             CCcCeEEEecCCCCCcHhhcccccccccccCCccccc---chhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHH
Confidence            4445799999999999999999998765433332221   111222234444789999999931     11111    11


Q ss_pred             ccccCccEEEEEEeCCCH--HhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHH---HHHHHHHcCCeEEEe
Q 028986          102 LYYRGAAVAVVVYDITSP--DSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQD---GIEYAEKNGMFFIET  176 (200)
Q Consensus       102 ~~~~~~d~~i~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~---~~~~~~~~~~~~~~~  176 (200)
                      ...+--.+|+|+.|++..  -|......+|..|+.. ..+.|.|+|+||+|......++.+.   +..+...-++++++.
T Consensus       243 ALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpL-FaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~t  321 (620)
T KOG1490|consen  243 ALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPL-FANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQT  321 (620)
T ss_pred             HHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHH-hcCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEe
Confidence            112223589999999964  4667777788888876 5678899999999997776665443   223334446899999


Q ss_pred             cCCCCCCHHHHHHHHHHhhcc
Q 028986          177 SAKTADNINQLFEVLITCTSS  197 (200)
Q Consensus       177 S~~~~~~i~~~~~~i~~~~~~  197 (200)
                      |..+.+|+.++....++.+..
T Consensus       322 S~~~eegVm~Vrt~ACe~LLa  342 (620)
T KOG1490|consen  322 SCVQEEGVMDVRTTACEALLA  342 (620)
T ss_pred             cccchhceeeHHHHHHHHHHH
Confidence            999999999988887776643

>PRK13768 GTPase; Provisional

Probab=99.49  E-value=2.4e-13  Score=101.11  Aligned_cols=110  Identities=21%  Similarity=0.230  Sum_probs=70.7

Q ss_pred             EEEEEeCCChhhh---hhccccccc---C--ccEEEEEEeCCCHHhHHHH--HHHHHHHHHcCCCCCeEEEEEeCCCCCC
Q 028986           84 KFEIWDTAGQERY---AALAPLYYR---G--AAVAVVVYDITSPDSFNKA--QYWVKELQKHGSPDIVMALVGNKADLHE  153 (200)
Q Consensus        84 ~~~l~D~~g~~~~---~~~~~~~~~---~--~d~~i~v~d~~~~~s~~~~--~~~~~~i~~~~~~~~p~iiv~nK~D~~~  153 (200)
                      .+.+||+||+.+.   ...+..+++   .  .+++++++|+.........  ..|+...... ..+.|+++|+||+|+..
T Consensus        98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~-~~~~~~i~v~nK~D~~~  176 (253)
T PRK13768         98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL-RLGLPQIPVLNKADLLS  176 (253)
T ss_pred             CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH-HcCCCEEEEEEhHhhcC
Confidence            6899999997553   233322222   2  8999999999754322221  2233322222 34789999999999865


Q ss_pred             CCcCCHHHHHH----------------------------HHHHcC--CeEEEecCCCCCCHHHHHHHHHHhhc
Q 028986          154 KREVPAQDGIE----------------------------YAEKNG--MFFIETSAKTADNINQLFEVLITCTS  196 (200)
Q Consensus       154 ~~~~~~~~~~~----------------------------~~~~~~--~~~~~~S~~~~~~i~~~~~~i~~~~~  196 (200)
                      ..+.  +...+                            ..+..+  .+++++|++++.|+++++++|.+.+.
T Consensus       177 ~~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~  247 (253)
T PRK13768        177 EEEL--ERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC  247 (253)
T ss_pred             chhH--HHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence            4332  11111                            122223  47899999999999999999988774

>PRK00007 elongation factor G; Reviewed

Probab=99.49  E-value=1e-12  Score=110.51  Aligned_cols=142  Identities=13%  Similarity=0.051  Sum_probs=88.2

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCC--C---C-------------CccccceeEEEEEEEecCCcEEEEEEEeCCC
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFD--P---T-------------SKVTVGASFLSQTIALQDSTTVKFEIWDTAG   92 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~--~---~-------------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g   92 (200)
                      ++-.+|+|+|++++|||||+++|+...-.  .   .             .......+.....+...   ..++.++||||
T Consensus         8 ~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~---~~~~~liDTPG   84 (693)
T PRK00007          8 ERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK---DHRINIIDTPG   84 (693)
T ss_pred             cceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEEC---CeEEEEEeCCC
Confidence            34559999999999999999999742110  0   0             01111222222223332   26899999999


Q ss_pred             hhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCC-
Q 028986           93 QERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGM-  171 (200)
Q Consensus        93 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-  171 (200)
                      +.++.......+..+|++++|+|+...-..+. ...+..+..   .++|+++++||+|+....  ......++...++. 
T Consensus        85 ~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt-~~~~~~~~~---~~~p~iv~vNK~D~~~~~--~~~~~~~i~~~l~~~  158 (693)
T PRK00007         85 HVDFTIEVERSLRVLDGAVAVFDAVGGVEPQS-ETVWRQADK---YKVPRIAFVNKMDRTGAD--FYRVVEQIKDRLGAN  158 (693)
T ss_pred             cHHHHHHHHHHHHHcCEEEEEEECCCCcchhh-HHHHHHHHH---cCCCEEEEEECCCCCCCC--HHHHHHHHHHHhCCC
Confidence            98877667777888999999999886633333 223333333   367889999999987533  22233333333333 


Q ss_pred             ---eEEEecCCCC
Q 028986          172 ---FFIETSAKTA  181 (200)
Q Consensus       172 ---~~~~~S~~~~  181 (200)
                         ..+++|+..+
T Consensus       159 ~~~~~ipisa~~~  171 (693)
T PRK00007        159 PVPIQLPIGAEDD  171 (693)
T ss_pred             eeeEEecCccCCc
Confidence               3456666555

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.47  E-value=2e-12  Score=111.14  Aligned_cols=145  Identities=17%  Similarity=0.195  Sum_probs=91.5

Q ss_pred             cHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCc---------------EEEEEEEeCCChhhhhhcccccccCccE
Q 028986           45 GKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDST---------------TVKFEIWDTAGQERYAALAPLYYRGAAV  109 (200)
Q Consensus        45 GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~D~~g~~~~~~~~~~~~~~~d~  109 (200)
                      +||||+.++.+......-.-.++.+.....+......               .-.+.+|||||++.+.......+..+|+
T Consensus       473 ~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDi  552 (1049)
T PRK14845        473 HNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADL  552 (1049)
T ss_pred             ccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCE
Confidence            4999999999865533222222222222222222110               0138999999999988877778888999


Q ss_pred             EEEEEeCCC---HHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCC----------------HHHHH----HH-
Q 028986          110 AVVVYDITS---PDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVP----------------AQDGI----EY-  165 (200)
Q Consensus       110 ~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~----------------~~~~~----~~-  165 (200)
                      +++|+|+++   +.+++.+.    .+..   .++|+++|+||+|+.......                ..+..    ++ 
T Consensus       553 vlLVVDa~~Gi~~qT~e~I~----~lk~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~  625 (1049)
T PRK14845        553 AVLVVDINEGFKPQTIEAIN----ILRQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYELI  625 (1049)
T ss_pred             EEEEEECcccCCHhHHHHHH----HHHH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHHh
Confidence            999999986   34444332    2332   267899999999985422110                00100    00 


Q ss_pred             --HHH---------------cCCeEEEecCCCCCCHHHHHHHHHHhhc
Q 028986          166 --AEK---------------NGMFFIETSAKTADNINQLFEVLITCTS  196 (200)
Q Consensus       166 --~~~---------------~~~~~~~~S~~~~~~i~~~~~~i~~~~~  196 (200)
                        ..+               ..++++++||++|.|+++++.+|....+
T Consensus       626 ~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~  673 (1049)
T PRK14845        626 GKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQ  673 (1049)
T ss_pred             hHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhH
Confidence              011               1457999999999999999998875443

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=99.46  E-value=7.3e-13  Score=87.95  Aligned_cols=114  Identities=33%  Similarity=0.472  Sum_probs=82.1

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcCCCCCCCc-cccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEE
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSK-VTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVV  112 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~  112 (200)
                      +||+++|..|+|||+|+.++....+...+. ++.+                            +......+.+.++.+++
T Consensus         1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~----------------------------~~~~~~~~~~s~~~~~~   52 (124)
T smart00010        1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG----------------------------IDVYDPTSYESFDVVLQ   52 (124)
T ss_pred             CEEEEECCCChhHHHHHHHHhcCCccccCceehhh----------------------------hhhccccccCCCCEEEE
Confidence            489999999999999999998776653333 2222                            22333456777899999


Q ss_pred             EEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHH
Q 028986          113 VYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNIN  185 (200)
Q Consensus       113 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~  185 (200)
                      +++.....+++.+  |...+....+.++|.++++||.|+.+......++..        .++++|++++.++.
T Consensus        53 v~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~~~~~--------~~~~~s~~~~~~~~  115 (124)
T smart00010       53 CWRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEERQVATEEGL--------EFAETSAKTPEEGE  115 (124)
T ss_pred             EEEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhCcCCHHHHH--------HHHHHhCCCcchhh
Confidence            9999999888765  777776666677899999999998443333333322        35677888888874

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>TIGR00101 ureG urease accessory protein UreG

Probab=99.46  E-value=1.4e-12  Score=93.67  Aligned_cols=103  Identities=18%  Similarity=0.133  Sum_probs=65.3

Q ss_pred             EEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHH
Q 028986           83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDG  162 (200)
Q Consensus        83 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~  162 (200)
                      ....++++.|..-..... ..  -+|.++.|+|+.+.++...  .+...+.      ..=++++||+|+........+..
T Consensus        92 ~D~iiIEt~G~~l~~~~~-~~--l~~~~i~vvD~~~~~~~~~--~~~~qi~------~ad~~~~~k~d~~~~~~~~~~~~  160 (199)
T TIGR00101        92 LEMVFIESGGDNLSATFS-PE--LADLTIFVIDVAAGDKIPR--KGGPGIT------RSDLLVINKIDLAPMVGADLGVM  160 (199)
T ss_pred             CCEEEEECCCCCcccccc-hh--hhCcEEEEEEcchhhhhhh--hhHhHhh------hccEEEEEhhhccccccccHHHH
Confidence            456778888843222221 11  1588999999997655321  1111221      11378899999975322233444


Q ss_pred             HHHHHH--cCCeEEEecCCCCCCHHHHHHHHHHhhc
Q 028986          163 IEYAEK--NGMFFIETSAKTADNINQLFEVLITCTS  196 (200)
Q Consensus       163 ~~~~~~--~~~~~~~~S~~~~~~i~~~~~~i~~~~~  196 (200)
                      .+..+.  .+.+++++|+++|+|+++++++|.+.+.
T Consensus       161 ~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~~  196 (199)
T TIGR00101       161 ERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYAL  196 (199)
T ss_pred             HHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence            444444  4578999999999999999999988754

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>PTZ00258 GTP-binding protein; Provisional

Probab=99.46  E-value=2e-12  Score=100.68  Aligned_cols=88  Identities=16%  Similarity=0.106  Sum_probs=55.4

Q ss_pred             CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCc--------------EEEEEEEeCCChhh
Q 028986           30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDST--------------TVKFEIWDTAGQER   95 (200)
Q Consensus        30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~l~D~~g~~~   95 (200)
                      ....++|.|+|.|++|||||+|+|++........+..+.+.....+.+.+..              ..++.++|+||...
T Consensus        18 ~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~   97 (390)
T PTZ00258         18 PGNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVK   97 (390)
T ss_pred             CCCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCc
Confidence            3567799999999999999999998865432222222222222233332221              24689999999421


Q ss_pred             -------hhhcccccccCccEEEEEEeCC
Q 028986           96 -------YAALAPLYYRGAAVAVVVYDIT  117 (200)
Q Consensus        96 -------~~~~~~~~~~~~d~~i~v~d~~  117 (200)
                             .....-..++++|++++|+|+.
T Consensus        98 ga~~g~gLg~~fL~~Ir~aD~il~VVd~f  126 (390)
T PTZ00258         98 GASEGEGLGNAFLSHIRAVDGIYHVVRAF  126 (390)
T ss_pred             CCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence                   1111122367799999999974

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.44  E-value=7.2e-13  Score=98.08  Aligned_cols=97  Identities=23%  Similarity=0.246  Sum_probs=78.3

Q ss_pred             hhhhhcccccccCccEEEEEEeCCCHH-hHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCe
Q 028986           94 ERYAALAPLYYRGAAVAVVVYDITSPD-SFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMF  172 (200)
Q Consensus        94 ~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~  172 (200)
                      +++..+...+++++|.+++|+|+.++. +++.+..|+..+..   .++|+++|+||+|+....+...+.... ....+.+
T Consensus        24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~i~~vIV~NK~DL~~~~~~~~~~~~~-~~~~g~~   99 (245)
T TIGR00157        24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QNIEPIIVLNKIDLLDDEDMEKEQLDI-YRNIGYQ   99 (245)
T ss_pred             cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECcccCCCHHHHHHHHHH-HHHCCCe
Confidence            566777888999999999999999876 89999999886654   478999999999996554433334433 3457889


Q ss_pred             EEEecCCCCCCHHHHHHHHHHh
Q 028986          173 FIETSAKTADNINQLFEVLITC  194 (200)
Q Consensus       173 ~~~~S~~~~~~i~~~~~~i~~~  194 (200)
                      ++++|++++.|++++|+.+.+.
T Consensus       100 v~~~SAktg~gi~eLf~~l~~~  121 (245)
T TIGR00157       100 VLMTSSKNQDGLKELIEALQNR  121 (245)
T ss_pred             EEEEecCCchhHHHHHhhhcCC
Confidence            9999999999999999987653

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=99.44  E-value=1.1e-11  Score=95.96  Aligned_cols=157  Identities=17%  Similarity=0.232  Sum_probs=96.0

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCC--------------Cccccc-------eeE---EEEEEEecCCcEEEEE
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPT--------------SKVTVG-------ASF---LSQTIALQDSTTVKFE   86 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~--------------~~~~~~-------~~~---~~~~~~~~~~~~~~~~   86 (200)
                      ...+.|.|+|+.++|||||+|+|.+.-.-|+              .+...+       ..+   ....+...++...++.
T Consensus        15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr   94 (492)
T TIGR02836        15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR   94 (492)
T ss_pred             CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence            4567899999999999999999998722111              111112       222   2233444455557899


Q ss_pred             EEeCCChhhh--------hh------c---------------cccccc-CccEEEEEE-eCC----CHHhH-HHHHHHHH
Q 028986           87 IWDTAGQERY--------AA------L---------------APLYYR-GAAVAVVVY-DIT----SPDSF-NKAQYWVK  130 (200)
Q Consensus        87 l~D~~g~~~~--------~~------~---------------~~~~~~-~~d~~i~v~-d~~----~~~s~-~~~~~~~~  130 (200)
                      ++||+|-..-        ..      -               ....+. .+|+.|+|. |.+    .++.+ +.-..++.
T Consensus        95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~  174 (492)
T TIGR02836        95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIE  174 (492)
T ss_pred             EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence            9999992110        00      0               222344 789998888 775    12222 33356666


Q ss_pred             HHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCC--CCCHHHHHHHHH
Q 028986          131 ELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKT--ADNINQLFEVLI  192 (200)
Q Consensus       131 ~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~--~~~i~~~~~~i~  192 (200)
                      .+++.   ++|+++|+||.|.....  ..+...++..+++++++.+|+..  ..++..+++.++
T Consensus       175 eLk~~---~kPfiivlN~~dp~~~e--t~~l~~~l~eky~vpvl~v~c~~l~~~DI~~il~~vL  233 (492)
T TIGR02836       175 ELKEL---NKPFIILLNSTHPYHPE--TEALRQELEEKYDVPVLAMDVESMRESDILSVLEEVL  233 (492)
T ss_pred             HHHhc---CCCEEEEEECcCCCCch--hHHHHHHHHHHhCCceEEEEHHHcCHHHHHHHHHHHH
Confidence            66654   88999999999943322  33444566667788877777654  345555555544

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.43  E-value=6.6e-13  Score=112.01  Aligned_cols=117  Identities=16%  Similarity=0.167  Sum_probs=76.9

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHcCC---------------CCCC---CccccceeEEEEEEEecCCcEEEEEEEeCCCh
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVRGQ---------------FDPT---SKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ   93 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~~~---------------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~   93 (200)
                      ...||+|+|+.++|||||+++|+...               +.+.   ...+............ +...+++.+|||||+
T Consensus        18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~-~~~~~~i~liDTPG~   96 (720)
T TIGR00490        18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEY-EGNEYLINLIDTPGH   96 (720)
T ss_pred             cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEee-cCCceEEEEEeCCCc
Confidence            45699999999999999999997531               1110   1112222221112223 233478999999999


Q ss_pred             hhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCC
Q 028986           94 ERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE  153 (200)
Q Consensus        94 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~  153 (200)
                      .++.......+..+|++++|+|+......+....| ..+.   ..+.|+++++||+|...
T Consensus        97 ~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~-~~~~---~~~~p~ivviNKiD~~~  152 (720)
T TIGR00490        97 VDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVL-RQAL---KENVKPVLFINKVDRLI  152 (720)
T ss_pred             cccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHH-HHHH---HcCCCEEEEEEChhccc
Confidence            88877778889999999999999875322221212 2222   33567889999999853

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>cd00066 G-alpha G protein alpha subunit

Probab=99.43  E-value=2.2e-12  Score=98.98  Aligned_cols=115  Identities=16%  Similarity=0.226  Sum_probs=82.5

Q ss_pred             EEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCH----------HhHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCC
Q 028986           83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSP----------DSFNKAQYWVKELQKH-GSPDIVMALVGNKADL  151 (200)
Q Consensus        83 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~D~  151 (200)
                      +.+.+||++|+...+..|.+++.+++++++|+|+++.          ..+......+..+... ...++|+++++||.|+
T Consensus       161 ~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D~  240 (317)
T cd00066         161 LKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKDL  240 (317)
T ss_pred             eEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChHH
Confidence            6789999999999999999999999999999999974          3344444444444332 2467999999999997


Q ss_pred             CCC----------------CcCCHHHHHHHHHH----------cCCeEEEecCCCCCCHHHHHHHHHHhhcc
Q 028986          152 HEK----------------REVPAQDGIEYAEK----------NGMFFIETSAKTADNINQLFEVLITCTSS  197 (200)
Q Consensus       152 ~~~----------------~~~~~~~~~~~~~~----------~~~~~~~~S~~~~~~i~~~~~~i~~~~~~  197 (200)
                      ...                .....+.+..+...          ..+....++|.+..++..+|+.+.+.+..
T Consensus       241 f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~  312 (317)
T cd00066         241 FEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQ  312 (317)
T ss_pred             HHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHH
Confidence            321                12233444444432          13345678999999999999988887654

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=99.42  E-value=3.2e-12  Score=92.55  Aligned_cols=154  Identities=19%  Similarity=0.187  Sum_probs=85.2

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCC--------ccccce----eEEEEEEEecCC------------------
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTS--------KVTVGA----SFLSQTIALQDS------------------   80 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~--------~~~~~~----~~~~~~~~~~~~------------------   80 (200)
                      .....|.++|+.|+|||||++++.........        ......    ......+...++                  
T Consensus        20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~   99 (207)
T TIGR00073        20 HGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLP   99 (207)
T ss_pred             cCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhc
Confidence            34668999999999999999999764110000        000000    000000111111                  


Q ss_pred             -cEEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCH
Q 028986           81 -TTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPA  159 (200)
Q Consensus        81 -~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~  159 (200)
                       ....+.++|+.|.-.. .  ..+....+..+.++|+.+.+...  .....      ....|.++++||+|+........
T Consensus       100 ~~~~d~IiIEt~G~l~~-~--~~~~~~~~~~i~Vvd~~~~d~~~--~~~~~------~~~~a~iiv~NK~Dl~~~~~~~~  168 (207)
T TIGR00073       100 LDDIDLLFIENVGNLVC-P--ADFDLGEHMRVVLLSVTEGDDKP--LKYPG------MFKEADLIVINKADLAEAVGFDV  168 (207)
T ss_pred             cCCCCEEEEecCCCcCC-C--cccccccCeEEEEEecCcccchh--hhhHh------HHhhCCEEEEEHHHccccchhhH
Confidence             0135667777772100 0  11112245556777777543211  11111      12356799999999965433223


Q ss_pred             HHHHHHHHHc--CCeEEEecCCCCCCHHHHHHHHHHhh
Q 028986          160 QDGIEYAEKN--GMFFIETSAKTADNINQLFEVLITCT  195 (200)
Q Consensus       160 ~~~~~~~~~~--~~~~~~~S~~~~~~i~~~~~~i~~~~  195 (200)
                      ++..+..+..  ..+++++|++++.|++++++++.+..
T Consensus       169 ~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~~  206 (207)
T TIGR00073       169 EKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQV  206 (207)
T ss_pred             HHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            3444444443  37899999999999999999998754

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=99.42  E-value=1.7e-12  Score=94.56  Aligned_cols=115  Identities=16%  Similarity=0.121  Sum_probs=68.0

Q ss_pred             EEEEEeCCChhhhh------hccccccc--CccEEEEEEeCCCHHhH-HHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCC
Q 028986           84 KFEIWDTAGQERYA------ALAPLYYR--GAAVAVVVYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLHEK  154 (200)
Q Consensus        84 ~~~l~D~~g~~~~~------~~~~~~~~--~~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~  154 (200)
                      ...++||||+-+.-      ......+.  ...+++|++|.....+- ..+...+-...-....+.|+|++.||.|+...
T Consensus       117 ~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyktklp~ivvfNK~Dv~d~  196 (366)
T KOG1532|consen  117 DYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYKTKLPFIVVFNKTDVSDS  196 (366)
T ss_pred             CEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHhccCCeEEEEeccccccc
Confidence            68899999974311      11111111  23577888886543221 22233333333334668999999999999654


Q ss_pred             Cc-----CCHHHHHHHHH-------------------H--cCCeEEEecCCCCCCHHHHHHHHHHhhccc
Q 028986          155 RE-----VPAQDGIEYAE-------------------K--NGMFFIETSAKTADNINQLFEVLITCTSSY  198 (200)
Q Consensus       155 ~~-----~~~~~~~~~~~-------------------~--~~~~~~~~S~~~~~~i~~~~~~i~~~~~~~  198 (200)
                      .-     .+.+..++..+                   +  .++..+-+|+.+|.|.+++|..+.+.+.++
T Consensus       197 ~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy  266 (366)
T KOG1532|consen  197 EFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEY  266 (366)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHH
Confidence            11     01111111111                   0  245678999999999999999998887765

>cd01882 BMS1 Bms1

Probab=99.42  E-value=4.1e-12  Score=93.03  Aligned_cols=139  Identities=14%  Similarity=0.154  Sum_probs=81.8

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA  110 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  110 (200)
                      .....|+|+|++|+|||||++.|.+...........+. +   .+...  ...++.++|+||..  ... ....+.+|++
T Consensus        37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i---~i~~~--~~~~i~~vDtPg~~--~~~-l~~ak~aDvV  107 (225)
T cd01882          37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-I---TVVTG--KKRRLTFIECPNDI--NAM-IDIAKVADLV  107 (225)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-E---EEEec--CCceEEEEeCCchH--HHH-HHHHHhcCEE
Confidence            44567999999999999999999875221111111111 1   11111  22578999999864  222 2235779999


Q ss_pred             EEEEeCCCHHhHHHHHHHHHHHHHcCCCCCe-EEEEEeCCCCCCCCcCCH---HHHHH-HHHH--cCCeEEEecCCCCC
Q 028986          111 VVVYDITSPDSFNKAQYWVKELQKHGSPDIV-MALVGNKADLHEKREVPA---QDGIE-YAEK--NGMFFIETSAKTAD  182 (200)
Q Consensus       111 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~iiv~nK~D~~~~~~~~~---~~~~~-~~~~--~~~~~~~~S~~~~~  182 (200)
                      ++++|++....... ..++..+...   +.| +++|+||+|+........   +.+.+ +..+  .+.+++.+|+++..
T Consensus       108 llviDa~~~~~~~~-~~i~~~l~~~---g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~  182 (225)
T cd01882         108 LLLIDASFGFEMET-FEFLNILQVH---GFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHG  182 (225)
T ss_pred             EEEEecCcCCCHHH-HHHHHHHHHc---CCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCC
Confidence            99999986533222 2344444433   456 455999999864322111   11222 2222  24689999998874

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=99.41  E-value=1.6e-12  Score=100.29  Aligned_cols=160  Identities=16%  Similarity=0.139  Sum_probs=79.2

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCC-CCCcccc--ceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcc-----cc
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFD-PTSKVTV--GASFLSQTIALQDSTTVKFEIWDTAGQERYAALA-----PL  102 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~-----~~  102 (200)
                      ..+++|+|+|.+|+|||||||+|.+-.-. +...++.  .++........++..  .+.+||.||........     ..
T Consensus        33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~p--nv~lWDlPG~gt~~f~~~~Yl~~~  110 (376)
T PF05049_consen   33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFP--NVTLWDLPGIGTPNFPPEEYLKEV  110 (376)
T ss_dssp             H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-T--TEEEEEE--GGGSS--HHHHHHHT
T ss_pred             cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCC--CCeEEeCCCCCCCCCCHHHHHHHc
Confidence            46789999999999999999999763211 1112211  111112222222222  58999999953221111     22


Q ss_pred             cccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCC-------CCCcCC----HHHHHHHHHH---
Q 028986          103 YYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLH-------EKREVP----AQDGIEYAEK---  168 (200)
Q Consensus       103 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~-------~~~~~~----~~~~~~~~~~---  168 (200)
                      -+...|.+|++.+-.=.  ... ..+...+.+.   +.|+++|-+|+|..       .++...    .+++++.|.+   
T Consensus       111 ~~~~yD~fiii~s~rf~--~nd-v~La~~i~~~---gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~  184 (376)
T PF05049_consen  111 KFYRYDFFIIISSERFT--END-VQLAKEIQRM---GKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQ  184 (376)
T ss_dssp             TGGG-SEEEEEESSS----HHH-HHHHHHHHHT---T-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHH
T ss_pred             cccccCEEEEEeCCCCc--hhh-HHHHHHHHHc---CCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHH
Confidence            35567988887764322  111 2233444443   77899999999961       111222    2333333332   


Q ss_pred             -cCC---eEEEecCCCC--CCHHHHHHHHHHhhccc
Q 028986          169 -NGM---FFIETSAKTA--DNINQLFEVLITCTSSY  198 (200)
Q Consensus       169 -~~~---~~~~~S~~~~--~~i~~~~~~i~~~~~~~  198 (200)
                       .++   ++|-+|..+-  .++..+.+.|.+.+...
T Consensus       185 k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~  220 (376)
T PF05049_consen  185 KAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAH  220 (376)
T ss_dssp             CTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GG
T ss_pred             HcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHH
Confidence             233   5888888774  56888888888776543

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=99.40  E-value=3.1e-12  Score=89.62  Aligned_cols=63  Identities=21%  Similarity=0.235  Sum_probs=44.6

Q ss_pred             EEEEEeCCChhh----hhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCC
Q 028986           84 KFEIWDTAGQER----YAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKA  149 (200)
Q Consensus        84 ~~~l~D~~g~~~----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~  149 (200)
                      .+.|+|+||...    ....+..+++.+|++|||.++.+..+-.....+.+.....   ...+++|.||+
T Consensus       102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~---~~~~i~V~nk~  168 (168)
T PF00350_consen  102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD---KSRTIFVLNKA  168 (168)
T ss_dssp             SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT---CSSEEEEEE-G
T ss_pred             ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC---CCeEEEEEcCC
Confidence            688999999532    3356777889999999999999875555555555555443   23388999985

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=99.40  E-value=7.6e-12  Score=95.81  Aligned_cols=103  Identities=13%  Similarity=0.067  Sum_probs=66.2

Q ss_pred             EEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcC--CHH
Q 028986           83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREV--PAQ  160 (200)
Q Consensus        83 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~--~~~  160 (200)
                      +.+.++||+|.......   ....+|.++++.+....+.+.....   .+.+     ..-++|+||+|+......  ...
T Consensus       149 ~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~---gi~E-----~aDIiVVNKaDl~~~~~a~~~~~  217 (332)
T PRK09435        149 YDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKK---GIME-----LADLIVINKADGDNKTAARRAAA  217 (332)
T ss_pred             CCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHh---hhhh-----hhheEEeehhcccchhHHHHHHH
Confidence            58899999996522221   4667999999987555554444332   1111     113799999998653211  112


Q ss_pred             HHHHHHHH-------cCCeEEEecCCCCCCHHHHHHHHHHhhc
Q 028986          161 DGIEYAEK-------NGMFFIETSAKTADNINQLFEVLITCTS  196 (200)
Q Consensus       161 ~~~~~~~~-------~~~~~~~~S~~~~~~i~~~~~~i~~~~~  196 (200)
                      +.......       +..+++.+|++++.|++++++.|.+.+.
T Consensus       218 el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~  260 (332)
T PRK09435        218 EYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA  260 (332)
T ss_pred             HHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            22222221       2357999999999999999999998764

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=99.40  E-value=1.6e-13  Score=100.85  Aligned_cols=112  Identities=21%  Similarity=0.155  Sum_probs=58.6

Q ss_pred             EEEEEeCCChhhhhhcccccc--------cCccEEEEEEeCCCHHh-HHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCC
Q 028986           84 KFEIWDTAGQERYAALAPLYY--------RGAAVAVVVYDITSPDS-FNKAQYWVKELQKHGSPDIVMALVGNKADLHEK  154 (200)
Q Consensus        84 ~~~l~D~~g~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~  154 (200)
                      .+.++|||||-+....+....        ...-++++++|.....+ ...+..++..+......+.|.+.|+||+|+...
T Consensus        92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~  171 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK  171 (238)
T ss_dssp             SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred             cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence            689999999877654443332        33458888999774322 222233232222222348999999999999762


Q ss_pred             Cc------------C-------CHHHHHHHHHH---cC-C-eEEEecCCCCCCHHHHHHHHHHhh
Q 028986          155 RE------------V-------PAQDGIEYAEK---NG-M-FFIETSAKTADNINQLFEVLITCT  195 (200)
Q Consensus       155 ~~------------~-------~~~~~~~~~~~---~~-~-~~~~~S~~~~~~i~~~~~~i~~~~  195 (200)
                      ..            .       ......+++..   .+ . .++++|+.+++++.+++..|-+.+
T Consensus       172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~  236 (238)
T PF03029_consen  172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN  236 (238)
T ss_dssp             HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred             hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence            10            0       01111122222   22 3 699999999999999999887764

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.39  E-value=6e-12  Score=97.78  Aligned_cols=158  Identities=15%  Similarity=0.240  Sum_probs=108.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCC--CCC------------CCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcc
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQ--FDP------------TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALA  100 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~--~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~  100 (200)
                      +|+|+.+-.=|||||+..|+...  |..            .....-+.+...+...+.... .++.++||||+.+|....
T Consensus         7 NIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~-~~INIvDTPGHADFGGEV   85 (603)
T COG1217           7 NIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNG-TRINIVDTPGHADFGGEV   85 (603)
T ss_pred             eeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCC-eEEEEecCCCcCCccchh
Confidence            79999999999999999998642  111            111223444444444443333 789999999999999999


Q ss_pred             cccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcC-CHHHHHHHHH-------HcCCe
Q 028986          101 PLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREV-PAQDGIEYAE-------KNGMF  172 (200)
Q Consensus       101 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~-~~~~~~~~~~-------~~~~~  172 (200)
                      +..+.-+|.+++++|+...- +.+.+..+....   ..+.+.|+|+||+|....+.. ..++...+..       +++.|
T Consensus        86 ERvl~MVDgvlLlVDA~EGp-MPQTrFVlkKAl---~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdFP  161 (603)
T COG1217          86 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKAL---ALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDFP  161 (603)
T ss_pred             hhhhhhcceEEEEEEcccCC-CCchhhhHHHHH---HcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCCc
Confidence            99999999999999998641 233333333333   335667899999998665331 1122223322       35678


Q ss_pred             EEEecCCCCC----------CHHHHHHHHHHhhcc
Q 028986          173 FIETSAKTAD----------NINQLFEVLITCTSS  197 (200)
Q Consensus       173 ~~~~S~~~~~----------~i~~~~~~i~~~~~~  197 (200)
                      +++.|++.|.          ++.-+|+.|++.+..
T Consensus       162 ivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~  196 (603)
T COG1217         162 IVYASARNGTASLDPEDEADDMAPLFETILDHVPA  196 (603)
T ss_pred             EEEeeccCceeccCccccccchhHHHHHHHHhCCC
Confidence            9999998874          688899999887653

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=99.36  E-value=3.7e-11  Score=90.50  Aligned_cols=140  Identities=16%  Similarity=0.202  Sum_probs=71.9

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHcCCCCCCC--------ccccceeEEEEEEE-ecCCcEEEEEEEeCCChh--------
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTS--------KVTVGASFLSQTIA-LQDSTTVKFEIWDTAGQE--------   94 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~--------~~~~~~~~~~~~~~-~~~~~~~~~~l~D~~g~~--------   94 (200)
                      ..++|+|+|.+|+|||||+|.|++.......        .............. ..++..+.+.++||||..        
T Consensus         3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~   82 (281)
T PF00735_consen    3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC   82 (281)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence            4689999999999999999999996543221        01111122222222 235667899999999910        


Q ss_pred             ----------hhh--------hcc-cccccCccEEEEEEeCCCHH-hHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCC
Q 028986           95 ----------RYA--------ALA-PLYYRGAAVAVVVYDITSPD-SFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK  154 (200)
Q Consensus        95 ----------~~~--------~~~-~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~  154 (200)
                                .+.        ..+ ...=...|+++|+++++... .-.. ...+..+    ...+++|.|+.|+|....
T Consensus        83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~D-i~~mk~L----s~~vNvIPvIaKaD~lt~  157 (281)
T PF00735_consen   83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLD-IEFMKRL----SKRVNVIPVIAKADTLTP  157 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHH-HHHHHHH----TTTSEEEEEESTGGGS-H
T ss_pred             hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHH-HHHHHHh----cccccEEeEEecccccCH
Confidence                      111        000 01113478999999987532 1112 2233333    446789999999997543


Q ss_pred             CcCC--HHHHHHHHHHcCCeEEEe
Q 028986          155 REVP--AQDGIEYAEKNGMFFIET  176 (200)
Q Consensus       155 ~~~~--~~~~~~~~~~~~~~~~~~  176 (200)
                      .+..  ...+.+....+++.++.-
T Consensus       158 ~el~~~k~~i~~~l~~~~I~~f~f  181 (281)
T PF00735_consen  158 EELQAFKQRIREDLEENNIKIFDF  181 (281)
T ss_dssp             HHHHHHHHHHHHHHHHTT--S---
T ss_pred             HHHHHHHHHHHHHHHHcCceeecc
Confidence            2211  122233344566665543

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=99.35  E-value=6e-12  Score=107.79  Aligned_cols=118  Identities=14%  Similarity=0.093  Sum_probs=78.4

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCC------------c----cccceeEEEEEEEec-------------CCc
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTS------------K----VTVGASFLSQTIALQ-------------DST   81 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~------------~----~~~~~~~~~~~~~~~-------------~~~   81 (200)
                      ++--+|+|+|+.++|||||+.+|+........            .    ...........+.+.             ...
T Consensus        17 ~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (843)
T PLN00116         17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGN   96 (843)
T ss_pred             cCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCC
Confidence            34558999999999999999999864311000            0    000011111111111             123


Q ss_pred             EEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCC
Q 028986           82 TVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLH  152 (200)
Q Consensus        82 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~  152 (200)
                      .+.+.++||||+.++.......++.+|++|+|+|+...-......-| ..+.   ..++|+++++||+|..
T Consensus        97 ~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~-~~~~---~~~~p~i~~iNK~D~~  163 (843)
T PLN00116         97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---GERIRPVLTVNKMDRC  163 (843)
T ss_pred             ceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHH-HHHH---HCCCCEEEEEECCccc
Confidence            47889999999999988888889999999999999976433332222 2232   4478899999999986

>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.35  E-value=3.7e-11  Score=91.69  Aligned_cols=115  Identities=17%  Similarity=0.262  Sum_probs=80.4

Q ss_pred             EEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHHhH-------HHH---HHHHHHHHH-cCCCCCeEEEEEeCCCC
Q 028986           83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSF-------NKA---QYWVKELQK-HGSPDIVMALVGNKADL  151 (200)
Q Consensus        83 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~-------~~~---~~~~~~i~~-~~~~~~p~iiv~nK~D~  151 (200)
                      ..+.++|.+||...+..|.+.+.+++++|||++++..+..       +.+   ..+++.+-. ....+.++|+++||.|+
T Consensus       195 ~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~DL  274 (354)
T KOG0082|consen  195 LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKKDL  274 (354)
T ss_pred             CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecHHH
Confidence            5799999999999999999999999999999999965322       122   223333322 23557899999999999


Q ss_pred             CCCC---------------cCCHHHHHHHHHH----------cCCeEEEecCCCCCCHHHHHHHHHHhhcc
Q 028986          152 HEKR---------------EVPAQDGIEYAEK----------NGMFFIETSAKTADNINQLFEVLITCTSS  197 (200)
Q Consensus       152 ~~~~---------------~~~~~~~~~~~~~----------~~~~~~~~S~~~~~~i~~~~~~i~~~~~~  197 (200)
                      .+.+               ....+++..+...          ..+.+..+.|.+..+|+.+|..+.+.+..
T Consensus       275 FeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~  345 (354)
T KOG0082|consen  275 FEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQ  345 (354)
T ss_pred             HHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHH
Confidence            5320               0123344433332          12345667899999999999998887754

>smart00275 G_alpha G protein alpha subunit

Probab=99.34  E-value=2.1e-11  Score=94.37  Aligned_cols=115  Identities=14%  Similarity=0.202  Sum_probs=81.1

Q ss_pred             EEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCH----------HhHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCC
Q 028986           83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSP----------DSFNKAQYWVKELQKH-GSPDIVMALVGNKADL  151 (200)
Q Consensus        83 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~D~  151 (200)
                      ..+.+||.+|+...+..|.+++.+++++|||+|+++.          ..+......+..+... ...+.|+++++||.|+
T Consensus       184 ~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~  263 (342)
T smart00275      184 LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDL  263 (342)
T ss_pred             eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHh
Confidence            4789999999999999999999999999999999963          2344444444444332 3467999999999998


Q ss_pred             CCC---------------CcCCHHHHHHHHHH-----c------CCeEEEecCCCCCCHHHHHHHHHHhhcc
Q 028986          152 HEK---------------REVPAQDGIEYAEK-----N------GMFFIETSAKTADNINQLFEVLITCTSS  197 (200)
Q Consensus       152 ~~~---------------~~~~~~~~~~~~~~-----~------~~~~~~~S~~~~~~i~~~~~~i~~~~~~  197 (200)
                      ...               -....+.+.++...     .      .+....++|.+..++..+|+.+.+.+..
T Consensus       264 ~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~  335 (342)
T smart00275      264 FEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQ  335 (342)
T ss_pred             HHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHH
Confidence            421               00123333433322     1      2345678899999999999888776653

Subunit of G proteins that contains the guanine nucleotide binding site

>PRK07560 elongation factor EF-2; Reviewed

Probab=99.34  E-value=2.6e-11  Score=102.74  Aligned_cols=117  Identities=13%  Similarity=0.099  Sum_probs=74.9

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCc----------------cccceeEEEEEEEe-cCCcEEEEEEEeCCChh
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSK----------------VTVGASFLSQTIAL-QDSTTVKFEIWDTAGQE   94 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~----------------~~~~~~~~~~~~~~-~~~~~~~~~l~D~~g~~   94 (200)
                      +.-+|+|+|+.++|||||+.+|+.........                ...........+.+ .++....+.++||||+.
T Consensus        19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~   98 (731)
T PRK07560         19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV   98 (731)
T ss_pred             cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc
Confidence            44589999999999999999998632110000                00001111111111 12234789999999999


Q ss_pred             hhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCC
Q 028986           95 RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLH  152 (200)
Q Consensus        95 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~  152 (200)
                      ++.......+..+|++++|+|+...-...... .+......   +.|.++++||+|..
T Consensus        99 df~~~~~~~l~~~D~avlVvda~~g~~~~t~~-~~~~~~~~---~~~~iv~iNK~D~~  152 (731)
T PRK07560         99 DFGGDVTRAMRAVDGAIVVVDAVEGVMPQTET-VLRQALRE---RVKPVLFINKVDRL  152 (731)
T ss_pred             ChHHHHHHHHHhcCEEEEEEECCCCCCccHHH-HHHHHHHc---CCCeEEEEECchhh
Confidence            88888888889999999999988753222222 22222222   45778999999975

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=99.34  E-value=7.2e-11  Score=91.16  Aligned_cols=84  Identities=17%  Similarity=0.113  Sum_probs=51.9

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCC--------------cEEEEEEEeCCChhh----
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDS--------------TTVKFEIWDTAGQER----   95 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~l~D~~g~~~----   95 (200)
                      ++|+++|.|++|||||+|+|++........+..+.+.....+.+.+.              .+.++.++|+||...    
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~   82 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK   82 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence            68999999999999999999997632211122221222222222221              123689999999421    


Q ss_pred             hhh---cccccccCccEEEEEEeCC
Q 028986           96 YAA---LAPLYYRGAAVAVVVYDIT  117 (200)
Q Consensus        96 ~~~---~~~~~~~~~d~~i~v~d~~  117 (200)
                      -..   ..-..++++|++++|+|+.
T Consensus        83 g~glg~~fL~~i~~aD~li~VVd~f  107 (364)
T PRK09601         83 GEGLGNQFLANIREVDAIVHVVRCF  107 (364)
T ss_pred             HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence            111   1122357899999999984

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=99.33  E-value=5.4e-11  Score=94.72  Aligned_cols=156  Identities=19%  Similarity=0.218  Sum_probs=103.4

Q ss_pred             CCCceeeEEEEcCCCCcHHHHHHHHHcCCC-----------------------------CCCCccccceeEEEEEEEecC
Q 028986           29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQF-----------------------------DPTSKVTVGASFLSQTIALQD   79 (200)
Q Consensus        29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~   79 (200)
                      ..+..++++|+|+-.+|||||+.+|+...-                             ........+.+.......+. 
T Consensus       173 ~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fe-  251 (603)
T KOG0458|consen  173 DPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFE-  251 (603)
T ss_pred             CCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEe-
Confidence            345678999999999999999999875321                             00011112233333333332 


Q ss_pred             CcEEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHH---hHH---HHHHHHHHHHHcCCCCCeEEEEEeCCCCCC
Q 028986           80 STTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPD---SFN---KAQYWVKELQKHGSPDIVMALVGNKADLHE  153 (200)
Q Consensus        80 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~  153 (200)
                      -....++|+|+||+..|......-..++|+.++|+|++..+   .|+   ..+.....++...  -..++|++||.|+..
T Consensus       252 s~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg--i~qlivaiNKmD~V~  329 (603)
T KOG0458|consen  252 SKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG--ISQLIVAINKMDLVS  329 (603)
T ss_pred             cCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC--cceEEEEeecccccC
Confidence            33368999999999888888888888899999999999642   222   2222223333332  334788899999998


Q ss_pred             CCcCCHHHHHH----HH-HHc-----CCeEEEecCCCCCCHHHH
Q 028986          154 KREVPAQDGIE----YA-EKN-----GMFFIETSAKTADNINQL  187 (200)
Q Consensus       154 ~~~~~~~~~~~----~~-~~~-----~~~~~~~S~~~~~~i~~~  187 (200)
                      +.+..++++..    |. +..     .+.|++||+..|+|+-..
T Consensus       330 Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~  373 (603)
T KOG0458|consen  330 WSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI  373 (603)
T ss_pred             ccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence            87766766664    33 222     346999999999987543

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.32  E-value=7.6e-11  Score=88.71  Aligned_cols=160  Identities=18%  Similarity=0.194  Sum_probs=98.2

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHcC----CCCCCCcc-----ccceeEEEEE----EEecCCcEEEEEEEeCCChhhhhh
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVRG----QFDPTSKV-----TVGASFLSQT----IALQDSTTVKFEIWDTAGQERYAA   98 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~~----~~~~~~~~-----~~~~~~~~~~----~~~~~~~~~~~~l~D~~g~~~~~~   98 (200)
                      ..+++.++|+-.||||+|.++|..-    .|+.+..+     +....+....    ...+.+.+.++.++|.||+...-.
T Consensus         6 ~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLIR   85 (522)
T KOG0461|consen    6 SNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLIR   85 (522)
T ss_pred             ceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHHH
Confidence            3489999999999999999999763    22222221     1111122211    233466678999999999977665


Q ss_pred             cccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCC---HHHHHHHHHHc------
Q 028986           99 LAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVP---AQDGIEYAEKN------  169 (200)
Q Consensus        99 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~---~~~~~~~~~~~------  169 (200)
                      ......+-.|..++|+|+.....-+..+-++  +.+..  -...++|+||+|...+.+..   .+...+..+.+      
T Consensus        86 tiiggaqiiDlm~lviDv~kG~QtQtAEcLi--ig~~~--c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~f~  161 (522)
T KOG0461|consen   86 TIIGGAQIIDLMILVIDVQKGKQTQTAECLI--IGELL--CKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTGFD  161 (522)
T ss_pred             HHHhhhheeeeeeEEEehhcccccccchhhh--hhhhh--ccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcCcC
Confidence            5555556679999999998653222222111  11111  12267888999986542211   12222222221      


Q ss_pred             -CCeEEEecCCCC----CCHHHHHHHHHHhh
Q 028986          170 -GMFFIETSAKTA----DNINQLFEVLITCT  195 (200)
Q Consensus       170 -~~~~~~~S~~~~----~~i~~~~~~i~~~~  195 (200)
                       +.|++++|++.|    +++.++.+.|-+.+
T Consensus       162 g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~i  192 (522)
T KOG0461|consen  162 GNSPIVEVSAADGYFKEEMIQELKEALESRI  192 (522)
T ss_pred             CCCceeEEecCCCccchhHHHHHHHHHHHhh
Confidence             468999999999    67777777766655

>PTZ00416 elongation factor 2; Provisional

Probab=99.32  E-value=1.2e-11  Score=105.84  Aligned_cols=117  Identities=15%  Similarity=0.095  Sum_probs=76.8

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHcCCCCC---CCc-------------cccceeEEEEEEEec-------CCcEEEEEEE
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDP---TSK-------------VTVGASFLSQTIALQ-------DSTTVKFEIW   88 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~---~~~-------------~~~~~~~~~~~~~~~-------~~~~~~~~l~   88 (200)
                      ..-+|+|+|+.++|||||+++|+...-..   ...             ...........+.+.       ++....+.++
T Consensus        18 ~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~li   97 (836)
T PTZ00416         18 QIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLI   97 (836)
T ss_pred             CcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEE
Confidence            34499999999999999999998732110   000             000001001111221       1224679999


Q ss_pred             eCCChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCC
Q 028986           89 DTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLH  152 (200)
Q Consensus        89 D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~  152 (200)
                      ||||+.++.......++.+|++|+|+|+...-.... ...+..+.   ..++|+++++||+|+.
T Consensus        98 DtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t-~~~~~~~~---~~~~p~iv~iNK~D~~  157 (836)
T PTZ00416         98 DSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQT-ETVLRQAL---QERIRPVLFINKVDRA  157 (836)
T ss_pred             cCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccH-HHHHHHHH---HcCCCEEEEEEChhhh
Confidence            999999888888888999999999999987633222 22333333   3357899999999986

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=99.31  E-value=9.3e-12  Score=86.67  Aligned_cols=79  Identities=20%  Similarity=0.119  Sum_probs=56.8

Q ss_pred             EEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHc--CCeEEEecCCCCCCHHH
Q 028986          109 VAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKN--GMFFIETSAKTADNINQ  186 (200)
Q Consensus       109 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~S~~~~~~i~~  186 (200)
                      .-|+|+|....+...  .+-...+.      ..=++|+||.|+...-..+.+...+-+++.  +.+++++|.++|+|+++
T Consensus       120 ~~v~VidvteGe~~P--~K~gP~i~------~aDllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~  191 (202)
T COG0378         120 LRVVVIDVTEGEDIP--RKGGPGIF------KADLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDE  191 (202)
T ss_pred             eEEEEEECCCCCCCc--ccCCCcee------EeeEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHH
Confidence            888999988763111  11001111      124789999999887666677777777664  57899999999999999


Q ss_pred             HHHHHHHhh
Q 028986          187 LFEVLITCT  195 (200)
Q Consensus       187 ~~~~i~~~~  195 (200)
                      +++|+....
T Consensus       192 ~~~~i~~~~  200 (202)
T COG0378         192 WLRFIEPQA  200 (202)
T ss_pred             HHHHHHhhc
Confidence            999998764

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.30  E-value=1.1e-11  Score=92.23  Aligned_cols=165  Identities=18%  Similarity=0.168  Sum_probs=106.9

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCc-----cccc-----------------eeEEEEEE-Eec---CCcEEE
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSK-----VTVG-----------------ASFLSQTI-ALQ---DSTTVK   84 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~-----~~~~-----------------~~~~~~~~-~~~---~~~~~~   84 (200)
                      +..++|.++|+-.=|||||.++|.+--....+.     .++.                 ..+..... ...   ..-..+
T Consensus         8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~   87 (415)
T COG5257           8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR   87 (415)
T ss_pred             CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence            678999999999999999999997632111000     0000                 00100000 000   111247


Q ss_pred             EEEEeCCChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCc--CCHHHH
Q 028986           85 FEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKRE--VPAQDG  162 (200)
Q Consensus        85 ~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~--~~~~~~  162 (200)
                      +.+.|.||++-.....-.-..-.|+.++|++++.+..-.+....+..+.-..  -..++++-||+|+...+.  -..+++
T Consensus        88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIig--ik~iiIvQNKIDlV~~E~AlE~y~qI  165 (415)
T COG5257          88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIG--IKNIIIVQNKIDLVSRERALENYEQI  165 (415)
T ss_pred             EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhc--cceEEEEecccceecHHHHHHHHHHH
Confidence            8999999998766655554555799999999997644434333333333221  234899999999965422  134566


Q ss_pred             HHHHHH---cCCeEEEecCCCCCCHHHHHHHHHHhhcc
Q 028986          163 IEYAEK---NGMFFIETSAKTADNINQLFEVLITCTSS  197 (200)
Q Consensus       163 ~~~~~~---~~~~~~~~S~~~~~~i~~~~~~i~~~~~~  197 (200)
                      ++|.+.   -+++++++||..+.|++.+++.|.+.+..
T Consensus       166 k~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ipt  203 (415)
T COG5257         166 KEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPT  203 (415)
T ss_pred             HHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCC
Confidence            666654   37799999999999999999999887753

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=99.30  E-value=8.4e-11  Score=88.65  Aligned_cols=148  Identities=20%  Similarity=0.245  Sum_probs=98.9

Q ss_pred             CCceeeEEEEcCCCCcHHHHHHHHHcCCC---------------------------------CCCCccccceeEEEEEEE
Q 028986           30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQF---------------------------------DPTSKVTVGASFLSQTIA   76 (200)
Q Consensus        30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~---------------------------------~~~~~~~~~~~~~~~~~~   76 (200)
                      .+..++.+-+|.-.=||||||-+|+.+..                                 .......+..+..++-+ 
T Consensus         3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyF-   81 (431)
T COG2895           3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYF-   81 (431)
T ss_pred             cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeec-
Confidence            35678999999999999999999976421                                 01111222333333322 


Q ss_pred             ecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHHhHHHHH--HHHHHHHHcCCCCCeEEEEEeCCCCCCC
Q 028986           77 LQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQ--YWVKELQKHGSPDIVMALVGNKADLHEK  154 (200)
Q Consensus        77 ~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~--~~~~~i~~~~~~~~p~iiv~nK~D~~~~  154 (200)
                        .....++.+-||||+++|......-...||+.|+++|+...- ++..+  .++..+..    -..+++.+||+||..-
T Consensus        82 --sT~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gv-l~QTrRHs~I~sLLG----IrhvvvAVNKmDLvdy  154 (431)
T COG2895          82 --STEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGV-LEQTRRHSFIASLLG----IRHVVVAVNKMDLVDY  154 (431)
T ss_pred             --ccccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhh-HHHhHHHHHHHHHhC----CcEEEEEEeeeccccc
Confidence              233357999999999999988888788899999999997652 22221  12222221    1337888999999775


Q ss_pred             CcCCHHHHH----HHHHHcCC---eEEEecCCCCCCHH
Q 028986          155 REVPAQDGI----EYAEKNGM---FFIETSAKTADNIN  185 (200)
Q Consensus       155 ~~~~~~~~~----~~~~~~~~---~~~~~S~~~~~~i~  185 (200)
                      .+...+++.    .|+..+++   .++++||..|.|+-
T Consensus       155 ~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~  192 (431)
T COG2895         155 SEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV  192 (431)
T ss_pred             CHHHHHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence            444444443    46666655   59999999999875

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=99.29  E-value=7.2e-11  Score=96.27  Aligned_cols=123  Identities=15%  Similarity=0.200  Sum_probs=72.6

Q ss_pred             CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhh----------hh
Q 028986           29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERY----------AA   98 (200)
Q Consensus        29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~----------~~   98 (200)
                      +-...++|+++|.+|+||||++|.|++............++.........++  ..+.++||||..+.          ..
T Consensus       114 ~LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk  191 (763)
T TIGR00993       114 PLDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILS  191 (763)
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHHH
Confidence            3456679999999999999999999997643332211122211111111233  57999999994321          11


Q ss_pred             ccccccc--CccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCC--CeEEEEEeCCCCCC
Q 028986           99 LAPLYYR--GAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPD--IVMALVGNKADLHE  153 (200)
Q Consensus        99 ~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~p~iiv~nK~D~~~  153 (200)
                      ....++.  ..|++|+|..++.......-..++..+......+  ..+|||+|+.|...
T Consensus       192 ~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp  250 (763)
T TIGR00993       192 SVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP  250 (763)
T ss_pred             HHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence            1122333  4799999998764332212234445554433222  33899999999875

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=99.29  E-value=1.4e-11  Score=100.31  Aligned_cols=166  Identities=18%  Similarity=0.196  Sum_probs=107.1

Q ss_pred             CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCC----CccccceeEEEEE--------EEecC---CcEEEEEEEeCCChh
Q 028986           30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPT----SKVTVGASFLSQT--------IALQD---STTVKFEIWDTAGQE   94 (200)
Q Consensus        30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~----~~~~~~~~~~~~~--------~~~~~---~~~~~~~l~D~~g~~   94 (200)
                      .-+..-+||+|+-.+|||-|+..+-+......    ....++.+|++..        +.-..   ...--+.++||||++
T Consensus       472 ~lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghE  551 (1064)
T KOG1144|consen  472 NLRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHE  551 (1064)
T ss_pred             hcCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCch
Confidence            34455699999999999999999987433211    1122333333322        00000   111247899999999


Q ss_pred             hhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCc-CC---------------
Q 028986           95 RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKRE-VP---------------  158 (200)
Q Consensus        95 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~-~~---------------  158 (200)
                      .|..++......||++|+|+|+-..-.-+.+. -++.++   ..+.|+||.+||+|..-.+. ..               
T Consensus       552 sFtnlRsrgsslC~~aIlvvdImhGlepqtiE-Si~lLR---~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v  627 (1064)
T KOG1144|consen  552 SFTNLRSRGSSLCDLAILVVDIMHGLEPQTIE-SINLLR---MRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDV  627 (1064)
T ss_pred             hhhhhhhccccccceEEEEeehhccCCcchhH-HHHHHH---hcCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHH
Confidence            99999999999999999999998652222222 223344   34788999999999742211 00               


Q ss_pred             --------HHHHHHHHHH-cC-------------CeEEEecCCCCCCHHHHHHHHHHhhcccC
Q 028986          159 --------AQDGIEYAEK-NG-------------MFFIETSAKTADNINQLFEVLITCTSSYC  199 (200)
Q Consensus       159 --------~~~~~~~~~~-~~-------------~~~~~~S~~~~~~i~~~~~~i~~~~~~~~  199 (200)
                              ...+.+|+.. ++             +.++++||..|+||.+++.+|+++.+.+|
T Consensus       628 ~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m  690 (1064)
T KOG1144|consen  628 QNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTM  690 (1064)
T ss_pred             HHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHH
Confidence                    0111122221 11             24789999999999999999999887765

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=99.27  E-value=1e-11  Score=92.51  Aligned_cols=154  Identities=21%  Similarity=0.245  Sum_probs=107.4

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChh---------hhhhccc
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE---------RYAALAP  101 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~---------~~~~~~~  101 (200)
                      ....-|.++|..++|||||+++|+.....+...-....+.+......+.|.  .+.+.||.|.-         .|....+
T Consensus       176 ~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~--~vlltDTvGFisdLP~~LvaAF~ATLe  253 (410)
T KOG0410|consen  176 ESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGN--FVLLTDTVGFISDLPIQLVAAFQATLE  253 (410)
T ss_pred             CCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCc--EEEEeechhhhhhCcHHHHHHHHHHHH
Confidence            344569999999999999999999766655555555556666666677776  67889999932         2333322


Q ss_pred             ccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCe----EEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEec
Q 028986          102 LYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIV----MALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETS  177 (200)
Q Consensus       102 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p----~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S  177 (200)
                       ....+|.++-|.|++.|..-+.....+..+++..-+..|    ++=|-||.|..+...  .++      .++  .+.+|
T Consensus       254 -eVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~--e~E------~n~--~v~is  322 (410)
T KOG0410|consen  254 -EVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEV--EEE------KNL--DVGIS  322 (410)
T ss_pred             -HHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccC--ccc------cCC--ccccc
Confidence             245699999999999997666666666777766444444    344567888654322  111      122  57899


Q ss_pred             CCCCCCHHHHHHHHHHhhcc
Q 028986          178 AKTADNINQLFEVLITCTSS  197 (200)
Q Consensus       178 ~~~~~~i~~~~~~i~~~~~~  197 (200)
                      +++|.|++++.+.+-.+..+
T Consensus       323 altgdgl~el~~a~~~kv~~  342 (410)
T KOG0410|consen  323 ALTGDGLEELLKAEETKVAS  342 (410)
T ss_pred             cccCccHHHHHHHHHHHhhh
Confidence            99999999999888776554

>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.26  E-value=1.8e-11  Score=87.08  Aligned_cols=146  Identities=21%  Similarity=0.298  Sum_probs=88.7

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHcCCC-CCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhh-----hcccccccC
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVRGQF-DPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYA-----ALAPLYYRG  106 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-----~~~~~~~~~  106 (200)
                      .-||+++|.+|+||||+=-.++.+.. ....-.+...+.....+.+- | ...+.+||.+|++.+-     ......+++
T Consensus         4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~Rfl-G-nl~LnlwDcGgqe~fmen~~~~q~d~iF~n   81 (295)
T KOG3886|consen    4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFL-G-NLVLNLWDCGGQEEFMENYLSSQEDNIFRN   81 (295)
T ss_pred             cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhh-h-hheeehhccCCcHHHHHHHHhhcchhhhee
Confidence            34899999999999997444442211 01112222233333333332 2 2578999999987433     244567899


Q ss_pred             ccEEEEEEeCCCHHhHHHHHH---HHHHHHHcCCCCCeEEEEEeCCCCCCCCc--CCHHHHHHHHH----HcCCeEEEec
Q 028986          107 AAVAVVVYDITSPDSFNKAQY---WVKELQKHGSPDIVMALVGNKADLHEKRE--VPAQDGIEYAE----KNGMFFIETS  177 (200)
Q Consensus       107 ~d~~i~v~d~~~~~s~~~~~~---~~~~i~~~~~~~~p~iiv~nK~D~~~~~~--~~~~~~~~~~~----~~~~~~~~~S  177 (200)
                      .++++++||++..+-..++..   -++.+.++ .+...+.+.+.|.|+.....  ...++..+...    ..++.++++|
T Consensus        82 V~vli~vFDves~e~~~D~~~yqk~Le~ll~~-SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Ts  160 (295)
T KOG3886|consen   82 VQVLIYVFDVESREMEKDFHYYQKCLEALLQN-SPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTS  160 (295)
T ss_pred             heeeeeeeeccchhhhhhHHHHHHHHHHHHhc-CCcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccc
Confidence            999999999998764444443   33444444 66778899999999965422  22222222222    2355678887


Q ss_pred             CCCC
Q 028986          178 AKTA  181 (200)
Q Consensus       178 ~~~~  181 (200)
                      ..+.
T Consensus       161 iwDe  164 (295)
T KOG3886|consen  161 IWDE  164 (295)
T ss_pred             hhhH
Confidence            7654

>cd01900 YchF YchF subfamily

Probab=99.25  E-value=1.7e-10  Score=86.35  Aligned_cols=82  Identities=16%  Similarity=0.124  Sum_probs=50.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCC--------------cEEEEEEEeCCChhh----hh
Q 028986           36 LVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDS--------------TTVKFEIWDTAGQER----YA   97 (200)
Q Consensus        36 i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~l~D~~g~~~----~~   97 (200)
                      |+|+|.|+||||||+|+|++........+..+.+.....+.+.+.              .+.+++++|+||...    ..
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~   80 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE   80 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence            579999999999999999997653222222222222222233221              123699999999421    11


Q ss_pred             hcc---cccccCccEEEEEEeCC
Q 028986           98 ALA---PLYYRGAAVAVVVYDIT  117 (200)
Q Consensus        98 ~~~---~~~~~~~d~~i~v~d~~  117 (200)
                      .+.   -..++++|++++|+|+.
T Consensus        81 glg~~fL~~i~~~D~li~VV~~f  103 (274)
T cd01900          81 GLGNKFLSHIREVDAIAHVVRCF  103 (274)
T ss_pred             HHHHHHHHHHHhCCEEEEEEeCc
Confidence            111   12356799999999874

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.24  E-value=4.2e-10  Score=86.02  Aligned_cols=148  Identities=16%  Similarity=0.231  Sum_probs=85.3

Q ss_pred             CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCC-------ccccceeEEEEEEE-ecCCcEEEEEEEeCCChh------
Q 028986           29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTS-------KVTVGASFLSQTIA-LQDSTTVKFEIWDTAGQE------   94 (200)
Q Consensus        29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~-------~~~~~~~~~~~~~~-~~~~~~~~~~l~D~~g~~------   94 (200)
                      ++...++++++|+.|.|||||+|.|+........       .+............ ..++..++++++||||..      
T Consensus        17 KkG~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns   96 (366)
T KOG2655|consen   17 KKGFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNS   96 (366)
T ss_pred             hcCCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCccccccc
Confidence            3456799999999999999999999987443220       01011122222222 235667899999999921      


Q ss_pred             ------------hhh-------hccccccc--CccEEEEEEeCCCHHhHHHH-HHHHHHHHHcCCCCCeEEEEEeCCCCC
Q 028986           95 ------------RYA-------ALAPLYYR--GAAVAVVVYDITSPDSFNKA-QYWVKELQKHGSPDIVMALVGNKADLH  152 (200)
Q Consensus        95 ------------~~~-------~~~~~~~~--~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~D~~  152 (200)
                                  .+.       ......+.  .+|+++|.+.++... +..+ ..++..+    ...+++|.|+.|+|..
T Consensus        97 ~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghg-L~p~Di~~Mk~l----~~~vNiIPVI~KaD~l  171 (366)
T KOG2655|consen   97 NCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHG-LKPLDIEFMKKL----SKKVNLIPVIAKADTL  171 (366)
T ss_pred             ccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCC-CcHhhHHHHHHH----hccccccceeeccccC
Confidence                        111       11112223  478888888876431 2211 2233333    4467789999999986


Q ss_pred             CCCcC--CHHHHHHHHHHcCCeEEEecCCCC
Q 028986          153 EKREV--PAQDGIEYAEKNGMFFIETSAKTA  181 (200)
Q Consensus       153 ~~~~~--~~~~~~~~~~~~~~~~~~~S~~~~  181 (200)
                      ...+.  -...+.+.+..+++++|.-.....
T Consensus       172 T~~El~~~K~~I~~~i~~~nI~vf~fp~~~~  202 (366)
T KOG2655|consen  172 TKDELNQFKKRIRQDIEEHNIKVFDFPTDES  202 (366)
T ss_pred             CHHHHHHHHHHHHHHHHHcCcceecCCCCcc
Confidence            54332  123334444556777665554443

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=99.24  E-value=1.4e-09  Score=78.69  Aligned_cols=154  Identities=17%  Similarity=0.172  Sum_probs=101.6

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhh-------hhccccccc
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERY-------AALAPLYYR  105 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-------~~~~~~~~~  105 (200)
                      .-+|+++|.|.+|||||+..++.-............+..+..+.+.+   ..+++.|.||.-+-       ....-...+
T Consensus        62 daRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~g---a~IQllDLPGIieGAsqgkGRGRQviavAr  138 (364)
T KOG1486|consen   62 DARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNG---ANIQLLDLPGIIEGASQGKGRGRQVIAVAR  138 (364)
T ss_pred             CeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecC---ceEEEecCcccccccccCCCCCceEEEEee
Confidence            45799999999999999999987443332332333333344444433   47899999994221       233344567


Q ss_pred             CccEEEEEEeCCCHHhH-HHHHHHHHHHH---------------------------------------------------
Q 028986          106 GAAVAVVVYDITSPDSF-NKAQYWVKELQ---------------------------------------------------  133 (200)
Q Consensus       106 ~~d~~i~v~d~~~~~s~-~~~~~~~~~i~---------------------------------------------------  133 (200)
                      .+|.++.|+|++..+.- +.+.+.++.+-                                                   
T Consensus       139 taDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naevl  218 (364)
T KOG1486|consen  139 TADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEVL  218 (364)
T ss_pred             cccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceEE
Confidence            79999999999975433 23344443111                                                   


Q ss_pred             --------------HcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHhhc
Q 028986          134 --------------KHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLITCTS  196 (200)
Q Consensus       134 --------------~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~~~  196 (200)
                                    ......++++.|-||+|     +++.++..++++.-+.  +-+|+....|++.+++.|++.+.
T Consensus       219 ~ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID-----~vs~eevdrlAr~Pns--vViSC~m~lnld~lle~iWe~l~  288 (364)
T KOG1486|consen  219 FREDCTVDDFIDVIEGNRVYIKCLYVYNKID-----QVSIEEVDRLARQPNS--VVISCNMKLNLDRLLERIWEELN  288 (364)
T ss_pred             EecCCChHHHHHHHhccceEEEEEEEeeccc-----eecHHHHHHHhcCCCc--EEEEeccccCHHHHHHHHHHHhc
Confidence                          01123477888888888     4667888888877664  55666777889999999988764

>TIGR00750 lao LAO/AO transport system ATPase

Probab=99.24  E-value=6.8e-11  Score=90.28  Aligned_cols=102  Identities=23%  Similarity=0.068  Sum_probs=62.9

Q ss_pred             EEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHH-
Q 028986           83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQD-  161 (200)
Q Consensus        83 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~-  161 (200)
                      +.+.++||+|.....   ......+|.++++.+....+   .+..+...+     .++|.++|+||+|+.......... 
T Consensus       127 ~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~~---el~~~~~~l-----~~~~~ivv~NK~Dl~~~~~~~~~~~  195 (300)
T TIGR00750       127 YDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTGD---DLQGIKAGL-----MEIADIYVVNKADGEGATNVTIARL  195 (300)
T ss_pred             CCEEEEeCCCCchhh---hHHHHhhceEEEEecCCccH---HHHHHHHHH-----hhhccEEEEEcccccchhHHHHHHH
Confidence            688999999853211   22466688888886544333   333222222     245678999999986543211000 


Q ss_pred             -----HHHHHH---HcCCeEEEecCCCCCCHHHHHHHHHHhh
Q 028986          162 -----GIEYAE---KNGMFFIETSAKTADNINQLFEVLITCT  195 (200)
Q Consensus       162 -----~~~~~~---~~~~~~~~~S~~~~~~i~~~~~~i~~~~  195 (200)
                           ...+..   .+..+++++|++++.|+++++++|.+..
T Consensus       196 ~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~  237 (300)
T TIGR00750       196 MLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHK  237 (300)
T ss_pred             HHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence                 011111   1234689999999999999999998864

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>smart00053 DYNc Dynamin, GTPase

Probab=99.22  E-value=2.4e-10  Score=83.87  Aligned_cols=69  Identities=14%  Similarity=0.121  Sum_probs=43.8

Q ss_pred             EEEEEEeCCChh-------------hhhhcccccccC-ccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeC
Q 028986           83 VKFEIWDTAGQE-------------RYAALAPLYYRG-AAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNK  148 (200)
Q Consensus        83 ~~~~l~D~~g~~-------------~~~~~~~~~~~~-~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK  148 (200)
                      ..++++|+||..             ....+...|+++ .+++++|+|+...-.-.....+...+.   ..+.++++|+||
T Consensus       125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld---~~~~rti~ViTK  201 (240)
T smart00053      125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVD---PQGERTIGVITK  201 (240)
T ss_pred             CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHH---HcCCcEEEEEEC
Confidence            478999999953             122445566774 569999999875322222222223332   446789999999


Q ss_pred             CCCCCC
Q 028986          149 ADLHEK  154 (200)
Q Consensus       149 ~D~~~~  154 (200)
                      .|..+.
T Consensus       202 ~D~~~~  207 (240)
T smart00053      202 LDLMDE  207 (240)
T ss_pred             CCCCCc
Confidence            998653

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=99.21  E-value=1e-09  Score=83.43  Aligned_cols=140  Identities=16%  Similarity=0.175  Sum_probs=82.3

Q ss_pred             CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCC----------CccccceeEEEEEEEecCCcEEEEEEEeCCChh-----
Q 028986           30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPT----------SKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE-----   94 (200)
Q Consensus        30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~-----   94 (200)
                      ....++|+++|+.|+|||||+|.|++......          ..++........ ....++..+.++++||||..     
T Consensus        20 ~Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~-~l~e~~~~~~l~vIDtpGfGD~idN   98 (373)
T COG5019          20 KGIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKA-ELEEDGFHLNLTVIDTPGFGDFIDN   98 (373)
T ss_pred             cCCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeee-eeecCCeEEEEEEeccCCccccccc
Confidence            46789999999999999999999998632211          112222222222 22345666899999999911     


Q ss_pred             -------------hhh--------hcccccc--cCccEEEEEEeCCCHHhHHHH-HHHHHHHHHcCCCCCeEEEEEeCCC
Q 028986           95 -------------RYA--------ALAPLYY--RGAAVAVVVYDITSPDSFNKA-QYWVKELQKHGSPDIVMALVGNKAD  150 (200)
Q Consensus        95 -------------~~~--------~~~~~~~--~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~D  150 (200)
                                   .+.        ..+..-+  ..+|+++|.+.++... +..+ ...+..+    ...+.+|.|+.|+|
T Consensus        99 s~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~-l~~~DIe~Mk~l----s~~vNlIPVI~KaD  173 (373)
T COG5019          99 SKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHG-LKPLDIEAMKRL----SKRVNLIPVIAKAD  173 (373)
T ss_pred             cccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCC-CCHHHHHHHHHH----hcccCeeeeeeccc
Confidence                         111        1111111  2367888888876432 2221 2233334    33566899999999


Q ss_pred             CCCCCcC--CHHHHHHHHHHcCCeEEE
Q 028986          151 LHEKREV--PAQDGIEYAEKNGMFFIE  175 (200)
Q Consensus       151 ~~~~~~~--~~~~~~~~~~~~~~~~~~  175 (200)
                      .....+.  -.+.+.+....+++++|.
T Consensus       174 ~lT~~El~~~K~~I~~~i~~~nI~vf~  200 (373)
T COG5019         174 TLTDDELAEFKERIREDLEQYNIPVFD  200 (373)
T ss_pred             cCCHHHHHHHHHHHHHHHHHhCCceeC
Confidence            8654332  123344455567888774

>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.15  E-value=1.4e-10  Score=87.94  Aligned_cols=123  Identities=14%  Similarity=0.224  Sum_probs=79.3

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCc-cccceeEEEEEEEecC-----CcE----------------------
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSK-VTVGASFLSQTIALQD-----STT----------------------   82 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~----------------------   82 (200)
                      ....=|+++|+...||||||+.|+..+++.... +...+++....+.-..     |..                      
T Consensus        56 d~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnR  135 (532)
T KOG1954|consen   56 DAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNR  135 (532)
T ss_pred             ccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHH
Confidence            344459999999999999999999988763322 2222222222211111     000                      


Q ss_pred             -----------EEEEEEeCCChh-----------hhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCC
Q 028986           83 -----------VKFEIWDTAGQE-----------RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDI  140 (200)
Q Consensus        83 -----------~~~~l~D~~g~~-----------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~  140 (200)
                                 -.++++||||.-           .+....+.|...+|.+|++||+..-+--+.....+..++.+   .-
T Consensus       136 f~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~---Ed  212 (532)
T KOG1954|consen  136 FMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH---ED  212 (532)
T ss_pred             HHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC---cc
Confidence                       078999999932           23355566788899999999988654444445555555544   44


Q ss_pred             eEEEEEeCCCCCCCCc
Q 028986          141 VMALVGNKADLHEKRE  156 (200)
Q Consensus       141 p~iiv~nK~D~~~~~~  156 (200)
                      .+-+|+||+|+.+.++
T Consensus       213 kiRVVLNKADqVdtqq  228 (532)
T KOG1954|consen  213 KIRVVLNKADQVDTQQ  228 (532)
T ss_pred             eeEEEeccccccCHHH
Confidence            4888999999765443

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=99.14  E-value=5.4e-10  Score=80.19  Aligned_cols=147  Identities=18%  Similarity=0.201  Sum_probs=82.9

Q ss_pred             CCceeeEEEEcCCCCcHHHHHHHHHcCCCCC---------CCccccceeEEEEEEEecCCcEEEEEEEeCCCh-------
Q 028986           30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDP---------TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ-------   93 (200)
Q Consensus        30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~-------   93 (200)
                      ....++|+|+|++|.|||||+|.|+......         ....+........ +...++...+++++||||.       
T Consensus        43 ~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~th-vieE~gVklkltviDTPGfGDqInN~  121 (336)
T KOG1547|consen   43 TGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITH-VIEEKGVKLKLTVIDTPGFGDQINND  121 (336)
T ss_pred             ccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeee-eeeecceEEEEEEecCCCcccccCcc
Confidence            4568999999999999999999998643311         1112222222222 2233556688999999991       


Q ss_pred             -------------------hhhhhcccccccC--ccEEEEEEeCCCHHhHHHH-HHHHHHHHHcCCCCCeEEEEEeCCCC
Q 028986           94 -------------------ERYAALAPLYYRG--AAVAVVVYDITSPDSFNKA-QYWVKELQKHGSPDIVMALVGNKADL  151 (200)
Q Consensus        94 -------------------~~~~~~~~~~~~~--~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~D~  151 (200)
                                         ++....++..+..  +++++|.+..+. .++..+ ..++..+.+    -+.++.|+.|+|-
T Consensus       122 ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptG-hsLrplDieflkrLt~----vvNvvPVIakaDt  196 (336)
T KOG1547|consen  122 NCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTG-HSLRPLDIEFLKRLTE----VVNVVPVIAKADT  196 (336)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCC-CccCcccHHHHHHHhh----hheeeeeEeeccc
Confidence                               1112223334444  456666665543 334333 334444433    3558889999996


Q ss_pred             CCC--CcCCHHHHHHHHHHcCCeEEEecCCCCC
Q 028986          152 HEK--REVPAQDGIEYAEKNGMFFIETSAKTAD  182 (200)
Q Consensus       152 ~~~--~~~~~~~~~~~~~~~~~~~~~~S~~~~~  182 (200)
                      ..-  +..-.+.+++-...+++.+++--+.+-.
T Consensus       197 lTleEr~~FkqrI~~el~~~~i~vYPq~~fded  229 (336)
T KOG1547|consen  197 LTLEERSAFKQRIRKELEKHGIDVYPQDSFDED  229 (336)
T ss_pred             ccHHHHHHHHHHHHHHHHhcCcccccccccccc
Confidence            432  1112233344444567777765555433

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=99.11  E-value=8.9e-10  Score=82.55  Aligned_cols=56  Identities=21%  Similarity=0.176  Sum_probs=40.1

Q ss_pred             CeEEEEEeCCCCCCCCcCCHHHHHHHHHHc--CCeEEEecCCCCCCHHHHHHHHHHhh
Q 028986          140 IVMALVGNKADLHEKREVPAQDGIEYAEKN--GMFFIETSAKTADNINQLFEVLITCT  195 (200)
Q Consensus       140 ~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~S~~~~~~i~~~~~~i~~~~  195 (200)
                      .+-++|+||+|+........+...+..+..  .++++++|++++.|++++++||.++.
T Consensus       231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~~  288 (290)
T PRK10463        231 AASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQR  288 (290)
T ss_pred             cCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence            446899999999653222233334444333  57899999999999999999998754

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=99.09  E-value=1.5e-09  Score=90.41  Aligned_cols=120  Identities=17%  Similarity=0.112  Sum_probs=82.7

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCC-----C-----------ccccceeEEEEEEEecCCcEEEEEEEeCCChh
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPT-----S-----------KVTVGASFLSQTIALQDSTTVKFEIWDTAGQE   94 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~-----~-----------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~   94 (200)
                      +..-+|.|+|+-.+|||||..+|+...-...     .           ...-+.+.....+.......++++++|||||-
T Consensus         8 ~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHV   87 (697)
T COG0480           8 ERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHV   87 (697)
T ss_pred             ccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCcc
Confidence            4455899999999999999999975321100     0           01112222222222222214789999999999


Q ss_pred             hhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCC
Q 028986           95 RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK  154 (200)
Q Consensus        95 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~  154 (200)
                      ++.......++-+|++++|+|+...-..+.-.-|    ++....++|.++++||+|....
T Consensus        88 DFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~----rqa~~~~vp~i~fiNKmDR~~a  143 (697)
T COG0480          88 DFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVW----RQADKYGVPRILFVNKMDRLGA  143 (697)
T ss_pred             ccHHHHHHHHHhhcceEEEEECCCCeeecHHHHH----HHHhhcCCCeEEEEECcccccc
Confidence            9999999999999999999999976433333333    3344558999999999998654

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.08  E-value=1.9e-09  Score=83.67  Aligned_cols=154  Identities=19%  Similarity=0.102  Sum_probs=101.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCC---CCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEE
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQFDP---TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAV  111 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i  111 (200)
                      -|.-.|+-.-|||||+..+.+.....   ......+.+.........+   ..+.++|.||++++-...-..+...|..+
T Consensus         2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d---~~~~fIDvpgh~~~i~~miag~~~~d~al   78 (447)
T COG3276           2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLED---GVMGFIDVPGHPDFISNLLAGLGGIDYAL   78 (447)
T ss_pred             eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCC---CceEEeeCCCcHHHHHHHHhhhcCCceEE
Confidence            46778999999999999999864322   2222233333333333333   37999999999998887777788899999


Q ss_pred             EEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHH---cCCeEEEecCCCCCCHHHHH
Q 028986          112 VVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEK---NGMFFIETSAKTADNINQLF  188 (200)
Q Consensus       112 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~---~~~~~~~~S~~~~~~i~~~~  188 (200)
                      +|+++++.-..+..+ .+..+....  -...++|+||+|..++.. ..+...+....   .+.+++.+|+++|+|++++.
T Consensus        79 LvV~~deGl~~qtgE-hL~iLdllg--i~~giivltk~D~~d~~r-~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk  154 (447)
T COG3276          79 LVVAADEGLMAQTGE-HLLILDLLG--IKNGIIVLTKADRVDEAR-IEQKIKQILADLSLANAKIFKTSAKTGRGIEELK  154 (447)
T ss_pred             EEEeCccCcchhhHH-HHHHHHhcC--CCceEEEEeccccccHHH-HHHHHHHHHhhcccccccccccccccCCCHHHHH
Confidence            999997542222111 112222221  223689999999876532 12222222222   35678999999999999999


Q ss_pred             HHHHHhh
Q 028986          189 EVLITCT  195 (200)
Q Consensus       189 ~~i~~~~  195 (200)
                      +.|.+..
T Consensus       155 ~~l~~L~  161 (447)
T COG3276         155 NELIDLL  161 (447)
T ss_pred             HHHHHhh
Confidence            9999887

>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]

Probab=99.04  E-value=1.2e-09  Score=88.57  Aligned_cols=117  Identities=19%  Similarity=0.173  Sum_probs=82.3

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCc-----------------cccceeEEEEEE--EecCCcEEEEEEEeCC
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSK-----------------VTVGASFLSQTI--ALQDSTTVKFEIWDTA   91 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~-----------------~~~~~~~~~~~~--~~~~~~~~~~~l~D~~   91 (200)
                      ....+|.++|+-+.|||+|+..|....-+....                 ........+.++  ....++.+-++++|||
T Consensus       126 ~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTP  205 (971)
T KOG0468|consen  126 ERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTP  205 (971)
T ss_pred             ceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCC
Confidence            456689999999999999999998753211100                 111111222222  2235567889999999


Q ss_pred             ChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCC
Q 028986           92 GQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADL  151 (200)
Q Consensus        92 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~  151 (200)
                      |+-.+.......++.+|++++++|+...-.++.-+- +.   ..-....|+++|+||.|.
T Consensus       206 GHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~-ik---haiq~~~~i~vviNKiDR  261 (971)
T KOG0468|consen  206 GHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERI-IK---HAIQNRLPIVVVINKVDR  261 (971)
T ss_pred             CcccchHHHHHHhhhcceEEEEEEcccCceeeHHHH-HH---HHHhccCcEEEEEehhHH
Confidence            999988888889999999999999998765544332 22   222457889999999997

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=99.04  E-value=1.8e-09  Score=80.08  Aligned_cols=155  Identities=20%  Similarity=0.186  Sum_probs=92.7

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCC-----------CCCCCccccceeE---------------EEEEEE--------
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQ-----------FDPTSKVTVGASF---------------LSQTIA--------   76 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~-----------~~~~~~~~~~~~~---------------~~~~~~--------   76 (200)
                      .+...|.|.|.||+|||||+..|....           .+|.++.+.+.-.               +.+...        
T Consensus        49 G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGl  128 (323)
T COG1703          49 GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGL  128 (323)
T ss_pred             CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhh
Confidence            345579999999999999999986532           1233332222111               111110        


Q ss_pred             ---------ecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEe
Q 028986           77 ---------LQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGN  147 (200)
Q Consensus        77 ---------~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~n  147 (200)
                               ..+...+.+.|++|.|--+..   -....-+|.++++.=..-.+..+.++.-+..+.        =++|+|
T Consensus       129 S~at~~~i~~ldAaG~DvIIVETVGvGQse---v~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEia--------Di~vIN  197 (323)
T COG1703         129 SRATREAIKLLDAAGYDVIIVETVGVGQSE---VDIANMADTFLVVMIPGAGDDLQGIKAGIMEIA--------DIIVIN  197 (323)
T ss_pred             hHHHHHHHHHHHhcCCCEEEEEecCCCcch---hHHhhhcceEEEEecCCCCcHHHHHHhhhhhhh--------heeeEe
Confidence                     012222478888888743211   122344899999988777766666655444332        368899


Q ss_pred             CCCCCCCCcCCHHHH--HHHHH------HcCCeEEEecCCCCCCHHHHHHHHHHhhc
Q 028986          148 KADLHEKREVPAQDG--IEYAE------KNGMFFIETSAKTADNINQLFEVLITCTS  196 (200)
Q Consensus       148 K~D~~~~~~~~~~~~--~~~~~------~~~~~~~~~S~~~~~~i~~~~~~i~~~~~  196 (200)
                      |.|....+....+..  .++..      .+.-+++.+|+..|+|++++++.|.+...
T Consensus       198 KaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~  254 (323)
T COG1703         198 KADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRK  254 (323)
T ss_pred             ccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHH
Confidence            999644321111111  11111      12447999999999999999999987654

>cd01859 MJ1464 MJ1464

Probab=99.02  E-value=1.1e-09  Score=75.85  Aligned_cols=95  Identities=19%  Similarity=0.149  Sum_probs=64.9

Q ss_pred             hhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEE
Q 028986           96 YAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIE  175 (200)
Q Consensus        96 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  175 (200)
                      |..++.+.++++|++++|+|++++..... ..+...+.   ..+.|+++|+||+|+.....  ......+....+.+++.
T Consensus         2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~~---~~~~p~iiv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~   75 (156)
T cd01859           2 WKRLVRRIIKESDVVLEVLDARDPELTRS-RKLERYVL---ELGKKLLIVLNKADLVPKEV--LEKWKSIKESEGIPVVY   75 (156)
T ss_pred             HHHHHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHHHH---hCCCcEEEEEEhHHhCCHHH--HHHHHHHHHhCCCcEEE
Confidence            45567778889999999999987532221 12222222   23678999999999853221  11111233445678999


Q ss_pred             ecCCCCCCHHHHHHHHHHhhc
Q 028986          176 TSAKTADNINQLFEVLITCTS  196 (200)
Q Consensus       176 ~S~~~~~~i~~~~~~i~~~~~  196 (200)
                      +|++++.|++++++.|.+.+.
T Consensus        76 iSa~~~~gi~~L~~~l~~~~~   96 (156)
T cd01859          76 VSAKERLGTKILRRTIKELAK   96 (156)
T ss_pred             EEccccccHHHHHHHHHHHHh
Confidence            999999999999999988764

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=99.02  E-value=2.1e-10  Score=83.78  Aligned_cols=151  Identities=22%  Similarity=0.207  Sum_probs=84.9

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCC-----------CCCCCcccc---------------ceeEEEEEEEec------
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQ-----------FDPTSKVTV---------------GASFLSQTIALQ------   78 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~-----------~~~~~~~~~---------------~~~~~~~~~~~~------   78 (200)
                      .+.+.|.|.|+||+|||||++.|...-           .+|.++.+.               ....+.+.....      
T Consensus        27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGl  106 (266)
T PF03308_consen   27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGL  106 (266)
T ss_dssp             T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHH
T ss_pred             CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCc
Confidence            356789999999999999999996421           122211111               111222222110      


Q ss_pred             -----------CCcEEEEEEEeCCC--hhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEE
Q 028986           79 -----------DSTTVKFEIWDTAG--QERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALV  145 (200)
Q Consensus        79 -----------~~~~~~~~l~D~~g--~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv  145 (200)
                                 +...+.+.+++|.|  |.+.     ....-+|.+++|.-+...+..+.++.-+.++.        =++|
T Consensus       107 s~~t~~~v~ll~aaG~D~IiiETVGvGQsE~-----~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEia--------Di~v  173 (266)
T PF03308_consen  107 SRATRDAVRLLDAAGFDVIIIETVGVGQSEV-----DIADMADTVVLVLVPGLGDEIQAIKAGIMEIA--------DIFV  173 (266)
T ss_dssp             HHHHHHHHHHHHHTT-SEEEEEEESSSTHHH-----HHHTTSSEEEEEEESSTCCCCCTB-TTHHHH---------SEEE
T ss_pred             cHhHHHHHHHHHHcCCCEEEEeCCCCCccHH-----HHHHhcCeEEEEecCCCccHHHHHhhhhhhhc--------cEEE
Confidence                       11124788888877  3332     22345899999999887766655544333332        3688


Q ss_pred             EeCCCCCCCCcCCHHHHHHHHHH-------cCCeEEEecCCCCCCHHHHHHHHHHhh
Q 028986          146 GNKADLHEKREVPAQDGIEYAEK-------NGMFFIETSAKTADNINQLFEVLITCT  195 (200)
Q Consensus       146 ~nK~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~S~~~~~~i~~~~~~i~~~~  195 (200)
                      +||.|....... ..+.+.....       +..+++.+||..+.|++++++.|.+..
T Consensus       174 VNKaD~~gA~~~-~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~  229 (266)
T PF03308_consen  174 VNKADRPGADRT-VRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHR  229 (266)
T ss_dssp             EE--SHHHHHHH-HHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             EeCCChHHHHHH-HHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence            999995433221 1222222221       235899999999999999999987754

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>cd01855 YqeH YqeH

Probab=99.02  E-value=2.8e-09  Score=76.16  Aligned_cols=94  Identities=22%  Similarity=0.163  Sum_probs=65.6

Q ss_pred             hhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHH-----HHcC
Q 028986           96 YAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYA-----EKNG  170 (200)
Q Consensus        96 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~-----~~~~  170 (200)
                      +...+..+++.+|++++|+|++++..-     |...+... ..+.|+++|+||+|+..... ..+....+.     ...+
T Consensus        24 ~~~~l~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~~-~~~~~~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~   96 (190)
T cd01855          24 ILNLLSSISPKKALVVHVVDIFDFPGS-----LIPRLRLF-GGNNPVILVGNKIDLLPKDK-NLVRIKNWLRAKAAAGLG   96 (190)
T ss_pred             HHHHHHhcccCCcEEEEEEECccCCCc-----cchhHHHh-cCCCcEEEEEEchhcCCCCC-CHHHHHHHHHHHHHhhcC
Confidence            467788899999999999999875311     11222222 34679999999999865322 233333333     2233


Q ss_pred             C---eEEEecCCCCCCHHHHHHHHHHhhc
Q 028986          171 M---FFIETSAKTADNINQLFEVLITCTS  196 (200)
Q Consensus       171 ~---~~~~~S~~~~~~i~~~~~~i~~~~~  196 (200)
                      .   .++++|++++.|+++++++|.+.+.
T Consensus        97 ~~~~~i~~vSA~~~~gi~eL~~~l~~~l~  125 (190)
T cd01855          97 LKPKDVILISAKKGWGVEELINAIKKLAK  125 (190)
T ss_pred             CCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence            3   5899999999999999999988763

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>PRK12289 GTPase RsgA; Reviewed

Probab=99.02  E-value=3.4e-09  Score=82.23  Aligned_cols=93  Identities=20%  Similarity=0.180  Sum_probs=68.6

Q ss_pred             hhcccccccCccEEEEEEeCCCHH-hHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEE
Q 028986           97 AALAPLYYRGAAVAVVVYDITSPD-SFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIE  175 (200)
Q Consensus        97 ~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  175 (200)
                      ..+....+.++|.+++|+|+.++. ....+..|+....   ..++|+++|+||+|+....+  .+...+.+..++..++.
T Consensus        80 ~~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~---~~~ip~ILVlNK~DLv~~~~--~~~~~~~~~~~g~~v~~  154 (352)
T PRK12289         80 TELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAE---STGLEIVLCLNKADLVSPTE--QQQWQDRLQQWGYQPLF  154 (352)
T ss_pred             cceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHH---HCCCCEEEEEEchhcCChHH--HHHHHHHHHhcCCeEEE
Confidence            445556689999999999998765 3445567766553   34789999999999964322  12223344567889999


Q ss_pred             ecCCCCCCHHHHHHHHHHh
Q 028986          176 TSAKTADNINQLFEVLITC  194 (200)
Q Consensus       176 ~S~~~~~~i~~~~~~i~~~  194 (200)
                      +|++++.|++++++.|...
T Consensus       155 iSA~tg~GI~eL~~~L~~k  173 (352)
T PRK12289        155 ISVETGIGLEALLEQLRNK  173 (352)
T ss_pred             EEcCCCCCHHHHhhhhccc
Confidence            9999999999999988654

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.98  E-value=1.4e-09  Score=86.25  Aligned_cols=158  Identities=20%  Similarity=0.354  Sum_probs=114.4

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA  110 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  110 (200)
                      -.++|+.|+|..++|||+|+++++.+.|.+...+ .+..+ .+++.. ++....+.+.|.+|...     ..|...+|++
T Consensus        28 ipelk~givg~~~sgktalvhr~ltgty~~~e~~-e~~~~-kkE~vv-~gqs~lLlirdeg~~~~-----aQft~wvdav   99 (749)
T KOG0705|consen   28 IPELKLGIVGTSQSGKTALVHRYLTGTYTQDESP-EGGRF-KKEVVV-DGQSHLLLIRDEGGHPD-----AQFCQWVDAV   99 (749)
T ss_pred             cchhheeeeecccCCceeeeeeeccceeccccCC-cCccc-eeeEEe-eccceEeeeecccCCch-----hhhhhhccce
Confidence            4678999999999999999999999887655443 22233 333333 44446778888887443     4566678999


Q ss_pred             EEEEeCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCC--CCCcCCHHHHHHHHHH-cCCeEEEecCCCCCCHHH
Q 028986          111 VVVYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLH--EKREVPAQDGIEYAEK-NGMFFIETSAKTADNINQ  186 (200)
Q Consensus       111 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~--~~~~~~~~~~~~~~~~-~~~~~~~~S~~~~~~i~~  186 (200)
                      |+||...+..+++.+..+...+.... ...+|.++++++.-..  ..+.+.++...+++.. ..+.+|+.++.+|.++..
T Consensus       100 Ifvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~r  179 (749)
T KOG0705|consen  100 VFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVER  179 (749)
T ss_pred             EEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHH
Confidence            99999999999998877766665332 4467778877764432  2344555555555554 467899999999999999


Q ss_pred             HHHHHHHhhc
Q 028986          187 LFEVLITCTS  196 (200)
Q Consensus       187 ~~~~i~~~~~  196 (200)
                      +|+.+..++.
T Consensus       180 vf~~~~~k~i  189 (749)
T KOG0705|consen  180 VFQEVAQKIV  189 (749)
T ss_pred             HHHHHHHHHH
Confidence            9999887654

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.96  E-value=4e-09  Score=80.04  Aligned_cols=89  Identities=21%  Similarity=0.195  Sum_probs=68.5

Q ss_pred             ccccccCccEEEEEEeCCCHH-hHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecC
Q 028986          100 APLYYRGAAVAVVVYDITSPD-SFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSA  178 (200)
Q Consensus       100 ~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~  178 (200)
                      .+..+.++|.+++|+|+.++. ++..+..|+..+...   ++|+++|+||+|+....+  ...........+.+++.+|+
T Consensus        72 ~~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~---~ip~iIVlNK~DL~~~~~--~~~~~~~~~~~g~~v~~vSA  146 (287)
T cd01854          72 EQVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAA---GIEPVIVLTKADLLDDEE--EELELVEALALGYPVLAVSA  146 (287)
T ss_pred             ceeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHc---CCCEEEEEEHHHCCChHH--HHHHHHHHHhCCCeEEEEEC
Confidence            344588999999999999887 778888888776543   688999999999865421  12223334557889999999


Q ss_pred             CCCCCHHHHHHHHHH
Q 028986          179 KTADNINQLFEVLIT  193 (200)
Q Consensus       179 ~~~~~i~~~~~~i~~  193 (200)
                      +++.|+++++.+|..
T Consensus       147 ~~g~gi~~L~~~L~~  161 (287)
T cd01854         147 KTGEGLDELREYLKG  161 (287)
T ss_pred             CCCccHHHHHhhhcc
Confidence            999999999988764

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=98.96  E-value=2.4e-08  Score=76.53  Aligned_cols=85  Identities=15%  Similarity=0.142  Sum_probs=52.7

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEe---------------cCCcEEEEEEEeCCCh----
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIAL---------------QDSTTVKFEIWDTAGQ----   93 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~l~D~~g~----   93 (200)
                      .+++.|+|.|++|||||+|+++.........|..+.+...-.+.+               ....+..++++|.+|.    
T Consensus         2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA   81 (372)
T COG0012           2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA   81 (372)
T ss_pred             CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence            468999999999999999999987643222222222211111111               1123468899999983    


Q ss_pred             hhhhhccccc---ccCccEEEEEEeCC
Q 028986           94 ERYAALAPLY---YRGAAVAVVVYDIT  117 (200)
Q Consensus        94 ~~~~~~~~~~---~~~~d~~i~v~d~~  117 (200)
                      .+-..+-..|   ++++|+++-|+|+.
T Consensus        82 s~GeGLGNkFL~~IRevdaI~hVVr~f  108 (372)
T COG0012          82 SKGEGLGNKFLDNIREVDAIIHVVRCF  108 (372)
T ss_pred             ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence            1222233333   56799999999976

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.95  E-value=8.4e-09  Score=82.56  Aligned_cols=142  Identities=13%  Similarity=0.103  Sum_probs=87.7

Q ss_pred             CCCCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccC
Q 028986           27 SDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRG  106 (200)
Q Consensus        27 ~~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~  106 (200)
                      ....+.++-++|+||||+||||||+.|...-..    .+......+.+  +..+...+++++++|..  .... ....+-
T Consensus        63 p~d~PPPfIvavvGPpGtGKsTLirSlVrr~tk----~ti~~i~GPiT--vvsgK~RRiTflEcp~D--l~~m-iDvaKI  133 (1077)
T COG5192          63 PKDLPPPFIVAVVGPPGTGKSTLIRSLVRRFTK----QTIDEIRGPIT--VVSGKTRRITFLECPSD--LHQM-IDVAKI  133 (1077)
T ss_pred             cccCCCCeEEEeecCCCCChhHHHHHHHHHHHH----hhhhccCCceE--EeecceeEEEEEeChHH--HHHH-HhHHHh
Confidence            334466788889999999999999999885321    12222222222  23455578999999943  2222 233455


Q ss_pred             ccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCe-EEEEEeCCCCCCCCcCCHHHHHHHH----HH--cCCeEEEecCC
Q 028986          107 AAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIV-MALVGNKADLHEKREVPAQDGIEYA----EK--NGMFFIETSAK  179 (200)
Q Consensus       107 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~iiv~nK~D~~~~~~~~~~~~~~~~----~~--~~~~~~~~S~~  179 (200)
                      +|.+++++|.+-.-.++.+. |++.+..+   +.| ++-|+++.|+..........-..+.    .+  .|+++|.+|..
T Consensus       134 aDLVlLlIdgnfGfEMETmE-FLnil~~H---GmPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV  209 (1077)
T COG5192         134 ADLVLLLIDGNFGFEMETME-FLNILISH---GMPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGV  209 (1077)
T ss_pred             hheeEEEeccccCceehHHH-HHHHHhhc---CCCceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEeccc
Confidence            89999999998764444433 55555544   444 7788899999765432222212111    11  27788988865


Q ss_pred             CC
Q 028986          180 TA  181 (200)
Q Consensus       180 ~~  181 (200)
                      .+
T Consensus       210 ~n  211 (1077)
T COG5192         210 EN  211 (1077)
T ss_pred             cc
Confidence            53

>PRK00098 GTPase RsgA; Reviewed

Probab=98.93  E-value=4.2e-09  Score=80.36  Aligned_cols=87  Identities=23%  Similarity=0.235  Sum_probs=65.1

Q ss_pred             cccCccEEEEEEeCCCHHhHH-HHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCC
Q 028986          103 YYRGAAVAVVVYDITSPDSFN-KAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTA  181 (200)
Q Consensus       103 ~~~~~d~~i~v~d~~~~~s~~-~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~  181 (200)
                      ...++|.+++|+|+.++.... .+..|+..+..   .++|+++|+||+|+....+ ......+.....+.+++++|++++
T Consensus        77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~~-~~~~~~~~~~~~g~~v~~vSA~~g  152 (298)
T PRK00098         77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDLE-EARELLALYRAIGYDVLELSAKEG  152 (298)
T ss_pred             eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCHH-HHHHHHHHHHHCCCeEEEEeCCCC
Confidence            458999999999998876543 34677766653   3688999999999863322 122334555667889999999999


Q ss_pred             CCHHHHHHHHHH
Q 028986          182 DNINQLFEVLIT  193 (200)
Q Consensus       182 ~~i~~~~~~i~~  193 (200)
                      .|++++++.|..
T Consensus       153 ~gi~~L~~~l~g  164 (298)
T PRK00098        153 EGLDELKPLLAG  164 (298)
T ss_pred             ccHHHHHhhccC
Confidence            999999988753

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=98.92  E-value=7.4e-08  Score=76.36  Aligned_cols=113  Identities=17%  Similarity=0.249  Sum_probs=77.9

Q ss_pred             EEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHHh----------HHHHHHHHHHH-HHcCCCCCeEEEEEeCCCC
Q 028986           83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDS----------FNKAQYWVKEL-QKHGSPDIVMALVGNKADL  151 (200)
Q Consensus        83 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s----------~~~~~~~~~~i-~~~~~~~~p~iiv~nK~D~  151 (200)
                      ..+.++|++|+...+..|.+++.+++++|||+++++.+.          +.....++..+ ......+.|+++++||.|+
T Consensus       236 ~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D~  315 (389)
T PF00503_consen  236 RKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKIDL  315 (389)
T ss_dssp             EEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HHH
T ss_pred             cccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHHH
Confidence            678999999999899999999999999999999874322          32223333333 3233457999999999998


Q ss_pred             CC------C-----------C-cCCHHHHHHHHHHc------------CCeEEEecCCCCCCHHHHHHHHHHhh
Q 028986          152 HE------K-----------R-EVPAQDGIEYAEKN------------GMFFIETSAKTADNINQLFEVLITCT  195 (200)
Q Consensus       152 ~~------~-----------~-~~~~~~~~~~~~~~------------~~~~~~~S~~~~~~i~~~~~~i~~~~  195 (200)
                      ..      .           . .-..+.+..+....            .+.+..++|.+..++..+|+.+.+.+
T Consensus       316 f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i  389 (389)
T PF00503_consen  316 FEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII  389 (389)
T ss_dssp             HHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred             HHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence            31      1           0 12344555554431            12456889999999999999887753

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>PRK12288 GTPase RsgA; Reviewed

Probab=98.91  E-value=1e-08  Score=79.46  Aligned_cols=90  Identities=17%  Similarity=0.149  Sum_probs=68.6

Q ss_pred             cccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcC-CHHHHHHHHHHcCCeEEEecCCCC
Q 028986          103 YYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREV-PAQDGIEYAEKNGMFFIETSAKTA  181 (200)
Q Consensus       103 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~S~~~~  181 (200)
                      ...++|.+++|++.....++..+..|+....   ..++|+++|+||+|+....+. ......+.....+.+++++|++++
T Consensus       117 iaANvD~vlIV~s~~p~~s~~~Ldr~L~~a~---~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg  193 (347)
T PRK12288        117 IAANIDQIVIVSAVLPELSLNIIDRYLVACE---TLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTG  193 (347)
T ss_pred             EEEEccEEEEEEeCCCCCCHHHHHHHHHHHH---hcCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence            3577999999999987788888888877554   346889999999999654221 112223344567889999999999


Q ss_pred             CCHHHHHHHHHHhh
Q 028986          182 DNINQLFEVLITCT  195 (200)
Q Consensus       182 ~~i~~~~~~i~~~~  195 (200)
                      .|+++++++|...+
T Consensus       194 ~GideL~~~L~~ki  207 (347)
T PRK12288        194 EGLEELEAALTGRI  207 (347)
T ss_pred             cCHHHHHHHHhhCC
Confidence            99999999987653

>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]

Probab=98.88  E-value=2.9e-08  Score=72.24  Aligned_cols=151  Identities=18%  Similarity=0.146  Sum_probs=92.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhh-------hhhcccccccCc
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQER-------YAALAPLYYRGA  107 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-------~~~~~~~~~~~~  107 (200)
                      ++.++|-|.+|||||+..|.+-..+............+....+   ...++++.|.||.-+       .........+.|
T Consensus        61 ~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y---~gaKiqlldlpgiiegakdgkgrg~qviavartc  137 (358)
T KOG1487|consen   61 RVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRY---KGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTC  137 (358)
T ss_pred             eeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEec---cccceeeecCcchhcccccCCCCccEEEEEeecc
Confidence            7999999999999999999885432222211111111111112   224799999999422       123444556779


Q ss_pred             cEEEEEEeCCCHHhHHHH-HHHHH----------------------------------------HHHHc-----------
Q 028986          108 AVAVVVYDITSPDSFNKA-QYWVK----------------------------------------ELQKH-----------  135 (200)
Q Consensus       108 d~~i~v~d~~~~~s~~~~-~~~~~----------------------------------------~i~~~-----------  135 (200)
                      +.+++|+|+..+-+-..+ ++.++                                        ..+.+           
T Consensus       138 nli~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~Lr~DaT  217 (358)
T KOG1487|consen  138 NLIFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIALRFDAT  217 (358)
T ss_pred             cEEEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchheeeecCcc
Confidence            999999998876544322 22222                                        00000           


Q ss_pred             ----------CCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHHHHHHhhc
Q 028986          136 ----------GSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGM-FFIETSAKTADNINQLFEVLITCTS  196 (200)
Q Consensus       136 ----------~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~i~~~~~~i~~~~~  196 (200)
                                ....+|++.+.||+|...-+     +..-.   +.+ ..+++|+..++|++++++.+.+.+.
T Consensus       218 ~DdLIdvVegnr~yVp~iyvLNkIdsISiE-----ELdii---~~iphavpISA~~~wn~d~lL~~mweyL~  281 (358)
T KOG1487|consen  218 ADDLIDVVEGNRIYVPCIYVLNKIDSISIE-----ELDII---YTIPHAVPISAHTGWNFDKLLEKMWEYLK  281 (358)
T ss_pred             hhhhhhhhccCceeeeeeeeecccceeeee-----cccee---eeccceeecccccccchHHHHHHHhhcch
Confidence                      11257888899999964332     22111   223 3789999999999999998877653

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=98.86  E-value=2.8e-08  Score=77.26  Aligned_cols=136  Identities=15%  Similarity=0.116  Sum_probs=89.1

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCC--------C--------------CCCCccccceeEEEEEEEecCCcEEEEEEE
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQ--------F--------------DPTSKVTVGASFLSQTIALQDSTTVKFEIW   88 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~--------~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   88 (200)
                      .++-..+|+-+|.+|||||-..|+---        .              .......+..+.+...+.+.   ...+.+.
T Consensus        10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~---~~~iNLL   86 (528)
T COG4108          10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYA---DCLVNLL   86 (528)
T ss_pred             hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccC---CeEEecc
Confidence            344468999999999999998886310        0              00011222333444444443   3689999


Q ss_pred             eCCChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHH
Q 028986           89 DTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEK  168 (200)
Q Consensus        89 D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~  168 (200)
                      ||||++++..=...-+..+|..+.|+|+...-.- ...++++..+   ..++||+-++||.|.....  +.+.+.+.-+.
T Consensus        87 DTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~-qT~KLfeVcr---lR~iPI~TFiNKlDR~~rd--P~ELLdEiE~~  160 (528)
T COG4108          87 DTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEP-QTLKLFEVCR---LRDIPIFTFINKLDREGRD--PLELLDEIEEE  160 (528)
T ss_pred             CCCCccccchhHHHHHHhhheeeEEEecccCccH-HHHHHHHHHh---hcCCceEEEeeccccccCC--hHHHHHHHHHH
Confidence            9999998887777778889999999999876322 2234444444   4489999999999975432  34555555555


Q ss_pred             cCCeEEE
Q 028986          169 NGMFFIE  175 (200)
Q Consensus       169 ~~~~~~~  175 (200)
                      +++..++
T Consensus       161 L~i~~~P  167 (528)
T COG4108         161 LGIQCAP  167 (528)
T ss_pred             hCcceec
Confidence            5554333

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=98.85  E-value=6.5e-09  Score=76.27  Aligned_cols=155  Identities=19%  Similarity=0.181  Sum_probs=91.4

Q ss_pred             CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCcc-ccceeEEEEEEEecCCcEEEEEEEeCCC----------hhhhhh
Q 028986           30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKV-TVGASFLSQTIALQDSTTVKFEIWDTAG----------QERYAA   98 (200)
Q Consensus        30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g----------~~~~~~   98 (200)
                      +..+.++++.|.+++|||||+|.++....-..... ..+.+.....+.+.    -.+.++|.||          ..++..
T Consensus       133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~----~~~~~vDlPG~~~a~y~~~~~~d~~~  208 (320)
T KOG2486|consen  133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVG----KSWYEVDLPGYGRAGYGFELPADWDK  208 (320)
T ss_pred             CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeecc----ceEEEEecCCcccccCCccCcchHhH
Confidence            46678999999999999999999998654322222 22222222222221    3789999999          223444


Q ss_pred             cccccccCcc---EEEEEEeCCCHHh-H-HHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCc----CCHHHHHH-----
Q 028986           99 LAPLYYRGAA---VAVVVYDITSPDS-F-NKAQYWVKELQKHGSPDIVMALVGNKADLHEKRE----VPAQDGIE-----  164 (200)
Q Consensus        99 ~~~~~~~~~d---~~i~v~d~~~~~s-~-~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~----~~~~~~~~-----  164 (200)
                      ....|+.+-+   -+++++|++.+-. . .....|   +-   ..++|+.+|+||+|......    .....+..     
T Consensus       209 ~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~---~g---e~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l  282 (320)
T KOG2486|consen  209 FTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAW---LG---ENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGL  282 (320)
T ss_pred             hHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHH---Hh---hcCCCeEEeeehhhhhhhccccccCccccceeehhhc
Confidence            5555544332   4566777775411 1 111223   22   44899999999999743211    01111111     


Q ss_pred             --HHHHcCCeEEEecCCCCCCHHHHHHHHHHh
Q 028986          165 --YAEKNGMFFIETSAKTADNINQLFEVLITC  194 (200)
Q Consensus       165 --~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~  194 (200)
                        .+-....+++.+|+.++.|+++++-.|.+.
T Consensus       283 ~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~  314 (320)
T KOG2486|consen  283 IRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQL  314 (320)
T ss_pred             cccceeccCCceeeecccccCceeeeeehhhh
Confidence              111224467889999999999988766553

>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]

Probab=98.83  E-value=8.9e-08  Score=78.11  Aligned_cols=147  Identities=14%  Similarity=0.193  Sum_probs=86.2

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeE----------------------------------------
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASF----------------------------------------   70 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~----------------------------------------   70 (200)
                      ....||+|.|..++||||++|+++..+.-|.........+                                        
T Consensus       107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~  186 (749)
T KOG0448|consen  107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL  186 (749)
T ss_pred             hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence            4567999999999999999999987543222111110000                                        


Q ss_pred             ---EEEEEEecCCcE----EEEEEEeCCChh---hhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCC
Q 028986           71 ---LSQTIALQDSTT----VKFEIWDTAGQE---RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDI  140 (200)
Q Consensus        71 ---~~~~~~~~~~~~----~~~~l~D~~g~~---~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~  140 (200)
                         ....+..++...    -.+.++|.||.+   +...-...+..++|++|+|.++.+..+... +.|+....+.   +.
T Consensus       187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~se-k~Ff~~vs~~---Kp  262 (749)
T KOG0448|consen  187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSE-KQFFHKVSEE---KP  262 (749)
T ss_pred             CcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHH-HHHHHHhhcc---CC
Confidence               011111111100    157789999943   344555667788999999999887754443 4454544433   45


Q ss_pred             eEEEEEeCCCCCCCCcCCHHHHHHHHHHcC--------CeEEEecCCCC
Q 028986          141 VMALVGNKADLHEKREVPAQDGIEYAEKNG--------MFFIETSAKTA  181 (200)
Q Consensus       141 p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~--------~~~~~~S~~~~  181 (200)
                      .+.|+.||+|...+++.-.+.+.+-..++.        -.++.+|++.-
T Consensus       263 niFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~e~  311 (749)
T KOG0448|consen  263 NIFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAKEV  311 (749)
T ss_pred             cEEEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEeccch
Confidence            578888999986553332233333222222        23788886543

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.81  E-value=1.3e-08  Score=69.16  Aligned_cols=54  Identities=30%  Similarity=0.319  Sum_probs=37.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCCh
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ   93 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~   93 (200)
                      +++++|.+|+|||||+|+|.+........ ..+.+.....+.+..    .+.+|||||.
T Consensus        85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~i~DtpG~  138 (141)
T cd01857          85 TIGLVGYPNVGKSSLINALVGKKKVSVSA-TPGKTKHFQTIFLTP----TITLCDCPGL  138 (141)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCC-CCCcccceEEEEeCC----CEEEEECCCc
Confidence            89999999999999999999876543222 233333333344422    4799999994

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=98.81  E-value=3.9e-08  Score=72.86  Aligned_cols=146  Identities=14%  Similarity=0.172  Sum_probs=93.7

Q ss_pred             CCceeeEEEEcCCCCcHHHHHHHHHcC----------CCC----CCCccccceeEEEEEEEecCCcEEEEEEEeCCChhh
Q 028986           30 KNLRVKLVLLGDSGVGKSCIVLRFVRG----------QFD----PTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQER   95 (200)
Q Consensus        30 ~~~~~~i~i~G~~~sGKSsli~~l~~~----------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~   95 (200)
                      .+..+||..+|+-.=|||||-.+++.-          .|.    .......+.+.....+.+.... ..+-..|+||+.+
T Consensus         9 ~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~-rhyahVDcPGHaD   87 (394)
T COG0050           9 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETAN-RHYAHVDCPGHAD   87 (394)
T ss_pred             CCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCC-ceEEeccCCChHH
Confidence            466789999999999999999888641          111    1111223344444444443333 5788899999999


Q ss_pred             hhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCe-EEEEEeCCCCCCCCcC---CHHHHHHHHHHcCC
Q 028986           96 YAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIV-MALVGNKADLHEKREV---PAQDGIEYAEKNGM  171 (200)
Q Consensus        96 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~iiv~nK~D~~~~~~~---~~~~~~~~~~~~~~  171 (200)
                      |-.....-..+.|+.|+|+.+.+.- +.+.+..+...+   ..++| +++++||+|+.++.+.   ...+.+++..++++
T Consensus        88 YvKNMItgAaqmDgAILVVsA~dGp-mPqTrEHiLlar---qvGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f  163 (394)
T COG0050          88 YVKNMITGAAQMDGAILVVAATDGP-MPQTREHILLAR---QVGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGF  163 (394)
T ss_pred             HHHHHhhhHHhcCccEEEEEcCCCC-CCcchhhhhhhh---hcCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCC
Confidence            9888777778899999999998742 112222222222   33665 6777899999875432   33455667777755


Q ss_pred             -----eEEEecCCC
Q 028986          172 -----FFIETSAKT  180 (200)
Q Consensus       172 -----~~~~~S~~~  180 (200)
                           |++.-|+..
T Consensus       164 ~gd~~Pii~gSal~  177 (394)
T COG0050         164 PGDDTPIIRGSALK  177 (394)
T ss_pred             CCCCcceeechhhh
Confidence                 466656544

>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.81  E-value=2.2e-08  Score=72.15  Aligned_cols=161  Identities=18%  Similarity=0.230  Sum_probs=91.3

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhh-c--ccccccCccEE
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAA-L--APLYYRGAAVA  110 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-~--~~~~~~~~d~~  110 (200)
                      .+|+++|...|||||+-+..+.. ..|+...-.+.+.....-.+.+ .-+.+.+||.||+-.+-. .  ....++.+.++
T Consensus        28 p~ilLMG~rRsGKsSI~KVVFhk-MsPneTlflESTski~~d~is~-sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gAL  105 (347)
T KOG3887|consen   28 PRILLMGLRRSGKSSIQKVVFHK-MSPNETLFLESTSKITRDHISN-SFINFQVWDFPGQMDFFDPSFDYEMIFRGVGAL  105 (347)
T ss_pred             ceEEEEeecccCcchhhheeeec-cCCCceeEeeccCcccHhhhhh-hhcceEEeecCCccccCCCccCHHHHHhccCeE
Confidence            45999999999999987655543 2222211111111000001111 236799999999854332 1  23457889999


Q ss_pred             EEEEeCCCHHhHHHHHHHHHHHHHcC--CCCCeEEEEEeCCCCCCCCcCCHH--HH-----HHHHH----HcCCeEEEec
Q 028986          111 VVVYDITSPDSFNKAQYWVKELQKHG--SPDIVMALVGNKADLHEKREVPAQ--DG-----IEYAE----KNGMFFIETS  177 (200)
Q Consensus       111 i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~p~iiv~nK~D~~~~~~~~~~--~~-----~~~~~----~~~~~~~~~S  177 (200)
                      ++|+|+-+. -++.+..+...+.+.-  ++++.+=+.+.|.|...+......  .+     ..++.    ...+.++-+|
T Consensus       106 ifvIDaQdd-y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTS  184 (347)
T KOG3887|consen  106 IFVIDAQDD-YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTS  184 (347)
T ss_pred             EEEEechHH-HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEee
Confidence            999998654 2344444433343322  667888899999998654211110  01     11111    1123455555


Q ss_pred             CCCCCCHHHHHHHHHHhhccc
Q 028986          178 AKTADNINQLFEVLITCTSSY  198 (200)
Q Consensus       178 ~~~~~~i~~~~~~i~~~~~~~  198 (200)
                      .. ..++-+.|..+++++...
T Consensus       185 Iy-DHSIfEAFSkvVQkLipq  204 (347)
T KOG3887|consen  185 IY-DHSIFEAFSKVVQKLIPQ  204 (347)
T ss_pred             ec-chHHHHHHHHHHHHHhhh
Confidence            55 566888898888887654

>cd01858 NGP_1 NGP-1

Probab=98.80  E-value=2.3e-08  Score=69.28  Aligned_cols=56  Identities=21%  Similarity=0.298  Sum_probs=37.7

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCC
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAG   92 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g   92 (200)
                      ..++|+++|.+|+|||||+|+|.+........ ..+.+.....+...+    .+.++||||
T Consensus       101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~-~~g~T~~~~~~~~~~----~~~liDtPG  156 (157)
T cd01858         101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAP-IPGETKVWQYITLMK----RIYLIDCPG  156 (157)
T ss_pred             cceEEEEEeCCCCChHHHHHHHhcCCceeeCC-CCCeeEeEEEEEcCC----CEEEEECcC
Confidence            45789999999999999999999865433322 233333333323221    378999998

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=98.79  E-value=2e-08  Score=70.42  Aligned_cols=57  Identities=23%  Similarity=0.332  Sum_probs=40.0

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCC
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAG   92 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g   92 (200)
                      ...++++++|.||+|||||+|+|.+....... ...+.+.....+...    ..+.++||||
T Consensus       115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~-~~pg~T~~~~~~~~~----~~~~l~DtPG  171 (172)
T cd04178         115 KTSITVGVVGFPNVGKSSLINSLKRSRACNVG-ATPGVTKSMQEVHLD----KKVKLLDSPG  171 (172)
T ss_pred             ccCcEEEEEcCCCCCHHHHHHHHhCcccceec-CCCCeEcceEEEEeC----CCEEEEECcC
Confidence            44589999999999999999999997653332 233444433333332    2588999998

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.76  E-value=5.3e-08  Score=76.23  Aligned_cols=95  Identities=26%  Similarity=0.277  Sum_probs=68.5

Q ss_pred             hhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHH----HHHHH
Q 028986           93 QERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGI----EYAEK  168 (200)
Q Consensus        93 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~----~~~~~  168 (200)
                      .+++......+.+.++++++|+|+.+..     ..|...+.+.. .+.|+++|+||+|+.... ...+.+.    ++++.
T Consensus        50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~-~~~piilV~NK~DLl~k~-~~~~~~~~~l~~~~k~  122 (360)
T TIGR03597        50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFV-GGNPVLLVGNKIDLLPKS-VNLSKIKEWMKKRAKE  122 (360)
T ss_pred             HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHh-CCCCEEEEEEchhhCCCC-CCHHHHHHHHHHHHHH
Confidence            5677888888889999999999987643     22334443332 257899999999996532 2233333    34556


Q ss_pred             cCC---eEEEecCCCCCCHHHHHHHHHHh
Q 028986          169 NGM---FFIETSAKTADNINQLFEVLITC  194 (200)
Q Consensus       169 ~~~---~~~~~S~~~~~~i~~~~~~i~~~  194 (200)
                      .++   .++.+||+++.|++++++.|.+.
T Consensus       123 ~g~~~~~i~~vSAk~g~gv~eL~~~l~~~  151 (360)
T TIGR03597       123 LGLKPVDIILVSAKKGNGIDELLDKIKKA  151 (360)
T ss_pred             cCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence            676   48999999999999999998764

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>cd01858 NGP_1 NGP-1

Probab=98.76  E-value=3.2e-08  Score=68.56  Aligned_cols=90  Identities=18%  Similarity=0.139  Sum_probs=57.5

Q ss_pred             cccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCC
Q 028986          103 YYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTAD  182 (200)
Q Consensus       103 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~  182 (200)
                      .++.+|++++|+|++++... ....+...+... ..+.|+++|+||+|+....+ .......+.+.+....+.+|++.+.
T Consensus         5 ~l~~aD~il~VvD~~~p~~~-~~~~i~~~l~~~-~~~~p~ilVlNKiDl~~~~~-~~~~~~~~~~~~~~~~~~iSa~~~~   81 (157)
T cd01858           5 VIDSSDVVIQVLDARDPMGT-RCKHVEEYLKKE-KPHKHLIFVLNKCDLVPTWV-TARWVKILSKEYPTIAFHASINNPF   81 (157)
T ss_pred             hhhhCCEEEEEEECCCCccc-cCHHHHHHHHhc-cCCCCEEEEEEchhcCCHHH-HHHHHHHHhcCCcEEEEEeeccccc
Confidence            46779999999999986321 112222333322 34589999999999864322 1122222222223335789999999


Q ss_pred             CHHHHHHHHHHhh
Q 028986          183 NINQLFEVLITCT  195 (200)
Q Consensus       183 ~i~~~~~~i~~~~  195 (200)
                      +++++++.|.+.+
T Consensus        82 ~~~~L~~~l~~~~   94 (157)
T cd01858          82 GKGSLIQLLRQFS   94 (157)
T ss_pred             cHHHHHHHHHHHH
Confidence            9999999987654

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.73  E-value=1.5e-06  Score=59.13  Aligned_cols=148  Identities=19%  Similarity=0.286  Sum_probs=81.7

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCC-C-----------------
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTA-G-----------------   92 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~-g-----------------   92 (200)
                      +..++|.|.|+||||||||+.++.+......+.  .+- +...++. .++...-|.++|+. |                 
T Consensus         3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~k--vgG-f~t~EVR-~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGk   78 (179)
T COG1618           3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKGYK--VGG-FITPEVR-EGGKRIGFKIVDLATGEEGILARVGFSRPRVGK   78 (179)
T ss_pred             CcceEEEEeCCCCccHHHHHHHHHHHHHhcCce--eee-EEeeeee-cCCeEeeeEEEEccCCceEEEEEcCCCCcccce
Confidence            457899999999999999999988643222111  111 1122222 23333455666655 2                 


Q ss_pred             -------hh-hhhhcccccccCccEEEEEEeCCCHHhHHHH-HHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHH
Q 028986           93 -------QE-RYAALAPLYYRGAAVAVVVYDITSPDSFNKA-QYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGI  163 (200)
Q Consensus        93 -------~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~  163 (200)
                             .+ ......+..++.+|++|  +|--.+  ++.. +.|...+.+.-..+.|++.++.+.+...       .++
T Consensus        79 Y~V~v~~le~i~~~al~rA~~~aDvII--IDEIGp--MElks~~f~~~ve~vl~~~kpliatlHrrsr~P-------~v~  147 (179)
T COG1618          79 YGVNVEGLEEIAIPALRRALEEADVII--IDEIGP--MELKSKKFREAVEEVLKSGKPLIATLHRRSRHP-------LVQ  147 (179)
T ss_pred             EEeeHHHHHHHhHHHHHHHhhcCCEEE--Eecccc--hhhccHHHHHHHHHHhcCCCcEEEEEecccCCh-------HHH
Confidence                   11 11122333445567654  565544  3322 5555666665567888888887766311       122


Q ss_pred             HHHHHcCCeEEEecCCCCCCHHHHHHHHHHhhcc
Q 028986          164 EYAEKNGMFFIETSAKTADNINQLFEVLITCTSS  197 (200)
Q Consensus       164 ~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~~~~  197 (200)
                      ++ +..+..++.   .+..|-+.++..|+..+..
T Consensus       148 ~i-k~~~~v~v~---lt~~NR~~i~~~Il~~L~~  177 (179)
T COG1618         148 RI-KKLGGVYVF---LTPENRNRILNEILSVLKG  177 (179)
T ss_pred             Hh-hhcCCEEEE---EccchhhHHHHHHHHHhcc
Confidence            22 233433333   4455555888888887754

>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A

Probab=98.71  E-value=1.9e-06  Score=67.34  Aligned_cols=155  Identities=18%  Similarity=0.237  Sum_probs=91.7

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHcCCCCCC--------------Ccccc-------ceeE---EEEEEEecCCcEEEEEEE
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPT--------------SKVTV-------GASF---LSQTIALQDSTTVKFEIW   88 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~--------------~~~~~-------~~~~---~~~~~~~~~~~~~~~~l~   88 (200)
                      .+=|.|+||-.+||||||++|...-.-|+              .++..       ...+   ....+.+.++..++++++
T Consensus        17 dIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRLi   96 (492)
T PF09547_consen   17 DIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRLI   96 (492)
T ss_pred             ceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEEE
Confidence            45589999999999999999975321110              11111       1111   122355667777899999


Q ss_pred             eCCCh-------------hhh-hhcc---------------ccccc--CccEEEEEEeCC----CHHhHHHH-HHHHHHH
Q 028986           89 DTAGQ-------------ERY-AALA---------------PLYYR--GAAVAVVVYDIT----SPDSFNKA-QYWVKEL  132 (200)
Q Consensus        89 D~~g~-------------~~~-~~~~---------------~~~~~--~~d~~i~v~d~~----~~~s~~~~-~~~~~~i  132 (200)
                      |+.|-             +++ ..-|               ...++  ..=++++.-|.+    .++.+..+ .+.++.+
T Consensus        97 DCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~EL  176 (492)
T PF09547_consen   97 DCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEEL  176 (492)
T ss_pred             eecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHHH
Confidence            99980             110 0111               11121  123777777776    34445443 4455555


Q ss_pred             HHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCC--CCHHHHHHHHH
Q 028986          133 QKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTA--DNINQLFEVLI  192 (200)
Q Consensus       133 ~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~--~~i~~~~~~i~  192 (200)
                      +..   ++|+++++|-.+-...  ...+...++..+++++++++++..-  .++..+++.++
T Consensus       177 k~i---gKPFvillNs~~P~s~--et~~L~~eL~ekY~vpVlpvnc~~l~~~DI~~Il~~vL  233 (492)
T PF09547_consen  177 KEI---GKPFVILLNSTKPYSE--ETQELAEELEEKYDVPVLPVNCEQLREEDITRILEEVL  233 (492)
T ss_pred             HHh---CCCEEEEEeCCCCCCH--HHHHHHHHHHHHhCCcEEEeehHHcCHHHHHHHHHHHH
Confidence            544   8889999999885432  2355666777788999888877643  34555554443

It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.

>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.68  E-value=1.2e-07  Score=72.52  Aligned_cols=167  Identities=16%  Similarity=0.230  Sum_probs=102.5

Q ss_pred             ccccCCCCCCCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCC-----------------------CccccceeEEEEEEE
Q 028986           20 NLENAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPT-----------------------SKVTVGASFLSQTIA   76 (200)
Q Consensus        20 ~~~~~~~~~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~-----------------------~~~~~~~~~~~~~~~   76 (200)
                      .+-..-+.++...+++++++|.-.+|||||+-.|..++.+.-                       .....+.+..-..+.
T Consensus       154 VLVRKvPd~QqfievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVN  233 (591)
T KOG1143|consen  154 VLVRKVPDSQQFIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVN  233 (591)
T ss_pred             hhhhhCCCcccceEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccc
Confidence            333444556678899999999999999999988876543211                       001111111111111


Q ss_pred             ec---------CCcEEEEEEEeCCChhhhhhcccccccC--ccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEE
Q 028986           77 LQ---------DSTTVKFEIWDTAGQERYAALAPLYYRG--AAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALV  145 (200)
Q Consensus        77 ~~---------~~~~~~~~l~D~~g~~~~~~~~~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv  145 (200)
                      +.         +...--++++|.+|+..|.....+.+..  .|..++++.+.....+.. +..+..+..   .++|++++
T Consensus       234 Y~~~~taEEi~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT-rEHLgl~~A---L~iPfFvl  309 (591)
T KOG1143|consen  234 YAQNMTAEEIVEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT-REHLGLIAA---LNIPFFVL  309 (591)
T ss_pred             hhhcccHHHHHhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc-HHHHHHHHH---hCCCeEEE
Confidence            11         1122368999999999988766554443  588889998887644332 233344443   38999999


Q ss_pred             EeCCCCCCCCc------------------------CCHHHHHHHHHHc----CCeEEEecCCCCCCHHHHHHH
Q 028986          146 GNKADLHEKRE------------------------VPAQDGIEYAEKN----GMFFIETSAKTADNINQLFEV  190 (200)
Q Consensus       146 ~nK~D~~~~~~------------------------~~~~~~~~~~~~~----~~~~~~~S~~~~~~i~~~~~~  190 (200)
                      ++|.|+.....                        ...+++...+.+.    =.|+|-+|+..|++++-+...
T Consensus       310 vtK~Dl~~~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~f  382 (591)
T KOG1143|consen  310 VTKMDLVDRQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTF  382 (591)
T ss_pred             EEeeccccchhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHH
Confidence            99999964311                        1123333333332    237889999999998765443

>cd01856 YlqF YlqF

Probab=98.68  E-value=7.2e-08  Score=67.74  Aligned_cols=58  Identities=21%  Similarity=0.229  Sum_probs=40.1

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCCh
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ   93 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~   93 (200)
                      ...++++++|.+++|||||+|+|.+..+... ....+.+.....+.+.    ..+.++||||.
T Consensus       113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~-~~~~~~T~~~~~~~~~----~~~~~iDtpG~  170 (171)
T cd01856         113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKV-GNKPGVTKGIQWIKIS----PGIYLLDTPGI  170 (171)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCEEeeeEEEEec----CCEEEEECCCC
Confidence            3457899999999999999999998765322 2223334433334442    25789999984

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>cd01855 YqeH YqeH

Probab=98.67  E-value=5.4e-08  Score=69.54  Aligned_cols=56  Identities=21%  Similarity=0.350  Sum_probs=37.8

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHcCCCCC-------CCccccceeEEEEEEEecCCcEEEEEEEeCCC
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVRGQFDP-------TSKVTVGASFLSQTIALQDSTTVKFEIWDTAG   92 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g   92 (200)
                      ..+++++|.+|+|||||+|+|.+.....       ......+++.....+....    .+.++||||
T Consensus       127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~----~~~~~DtPG  189 (190)
T cd01855         127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN----GKKLYDTPG  189 (190)
T ss_pred             CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC----CCEEEeCcC
Confidence            3579999999999999999999854311       1222234444444444422    479999998

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.64  E-value=1.2e-07  Score=71.73  Aligned_cols=58  Identities=28%  Similarity=0.396  Sum_probs=40.1

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCCh
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ   93 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~   93 (200)
                      ...++++|+|.||+|||||+|+|.+........ ..+.+.....+....    .+.++||||.
T Consensus       116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~-~~g~T~~~~~~~~~~----~~~l~DtPG~  173 (276)
T TIGR03596       116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGN-RPGVTKGQQWIKLSD----GLELLDTPGI  173 (276)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCccccCC-CCCeecceEEEEeCC----CEEEEECCCc
Confidence            346899999999999999999999875433322 233333333333321    4789999995

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.64  E-value=1.5e-07  Score=65.08  Aligned_cols=83  Identities=18%  Similarity=0.047  Sum_probs=54.2

Q ss_pred             cEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHH
Q 028986          108 AVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQL  187 (200)
Q Consensus       108 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~  187 (200)
                      |++++|+|+.++.+...  .++.. ......++|+++|+||+|+....+. .+....+....+..++.+|++++.+++++
T Consensus         1 Dvvl~VvD~~~p~~~~~--~~i~~-~~~~~~~~p~IiVlNK~Dl~~~~~~-~~~~~~~~~~~~~~ii~vSa~~~~gi~~L   76 (155)
T cd01849           1 DVILEVLDARDPLGTRS--PDIER-VLIKEKGKKLILVLNKADLVPKEVL-RKWLAYLRHSYPTIPFKISATNGQGIEKK   76 (155)
T ss_pred             CEEEEEEeccCCccccC--HHHHH-HHHhcCCCCEEEEEechhcCCHHHH-HHHHHHHHhhCCceEEEEeccCCcChhhH
Confidence            78999999988754432  12221 1122346899999999998543210 11112232334557899999999999999


Q ss_pred             HHHHHHh
Q 028986          188 FEVLITC  194 (200)
Q Consensus       188 ~~~i~~~  194 (200)
                      ++.|.+.
T Consensus        77 ~~~i~~~   83 (155)
T cd01849          77 ESAFTKQ   83 (155)
T ss_pred             HHHHHHH
Confidence            9998764

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.64  E-value=1.5e-07  Score=71.53  Aligned_cols=58  Identities=26%  Similarity=0.345  Sum_probs=40.4

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCCh
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ   93 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~   93 (200)
                      ...++++|+|.||+|||||+|+|.+...... ....+.+.....+...    ..+.++||||.
T Consensus       119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~-~~~~g~T~~~~~~~~~----~~~~l~DtPGi  176 (287)
T PRK09563        119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKT-GNRPGVTKAQQWIKLG----KGLELLDTPGI  176 (287)
T ss_pred             cCceEEEEECCCCCCHHHHHHHHhcCCcccc-CCCCCeEEEEEEEEeC----CcEEEEECCCc
Confidence            4568999999999999999999999764333 2233444433333332    24789999995

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=98.62  E-value=1.1e-06  Score=64.37  Aligned_cols=119  Identities=15%  Similarity=0.129  Sum_probs=65.3

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcC--CCCCCCc---cccceeEEEEEEEecCCcEEEEEEEeCCChhhhh------hc
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRG--QFDPTSK---VTVGASFLSQTIALQDSTTVKFEIWDTAGQERYA------AL   99 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~------~~   99 (200)
                      .+..-|.|+|++++|||+|+|.|++.  .+.....   .|.+.-.  .......+....+.++||+|.....      ..
T Consensus         5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~--~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~   82 (224)
T cd01851           5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWM--WSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDA   82 (224)
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEE--EeccccCCCcceEEEEecCCcCccccCchhhhh
Confidence            44567889999999999999999997  4432222   1111111  1111211233689999999954221      11


Q ss_pred             ccccccC--ccEEEEEEeCCCH-HhHHHHHHHHHHH---------HHcCCCCCeEEEEEeCCCC
Q 028986          100 APLYYRG--AAVAVVVYDITSP-DSFNKAQYWVKEL---------QKHGSPDIVMALVGNKADL  151 (200)
Q Consensus       100 ~~~~~~~--~d~~i~v~d~~~~-~s~~~~~~~~~~i---------~~~~~~~~p~iiv~nK~D~  151 (200)
                      ....+..  +|++||..+.... ...+.+....+..         .........+++|+...++
T Consensus        83 ~~~~l~~llss~~i~n~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~ll~vvRD~~~  146 (224)
T cd01851          83 RLFALATLLSSVLIYNSWETILGDDLAALMGLLKTTLEVLGLAGLTEFEKPKPLLLFVVRDFSL  146 (224)
T ss_pred             HHHHHHHHHhCEEEEeccCcccHHHHHHHHHHHHHHHHhhhhhhhhhcccCCCceEEEEecCcC
Confidence            1222333  7889988887743 3333333333211         1122333446777766555

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>cd01856 YlqF YlqF

Probab=98.60  E-value=1.5e-07  Score=66.13  Aligned_cols=98  Identities=19%  Similarity=0.184  Sum_probs=63.3

Q ss_pred             CCChh-hhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHH
Q 028986           90 TAGQE-RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEK  168 (200)
Q Consensus        90 ~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~  168 (200)
                      .||+- +........++++|++++|+|++.+..... ..+...+     .+.|+++|+||+|+.....  .....++...
T Consensus         2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~-~~i~~~~-----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~   73 (171)
T cd01856           2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRN-PLLEKIL-----GNKPRIIVLNKADLADPKK--TKKWLKYFES   73 (171)
T ss_pred             CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCC-hhhHhHh-----cCCCEEEEEehhhcCChHH--HHHHHHHHHh
Confidence            35542 333445667888999999999987643211 1122211     2468999999999853321  1112233333


Q ss_pred             cCCeEEEecCCCCCCHHHHHHHHHHhh
Q 028986          169 NGMFFIETSAKTADNINQLFEVLITCT  195 (200)
Q Consensus       169 ~~~~~~~~S~~~~~~i~~~~~~i~~~~  195 (200)
                      ....++.+|++++.|++++.+.|.+.+
T Consensus        74 ~~~~vi~iSa~~~~gi~~L~~~l~~~l  100 (171)
T cd01856          74 KGEKVLFVNAKSGKGVKKLLKAAKKLL  100 (171)
T ss_pred             cCCeEEEEECCCcccHHHHHHHHHHHH
Confidence            455689999999999999999988764

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>COG1161 Predicted GTPases [General function prediction only]

Probab=98.59  E-value=1.4e-07  Score=72.72  Aligned_cols=58  Identities=24%  Similarity=0.350  Sum_probs=44.3

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCCh
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ   93 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~   93 (200)
                      ...++++|+|.|++|||||||+|.+..... .....+.+.....+...++    +.++||||.
T Consensus       130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~~-~s~~PG~Tk~~q~i~~~~~----i~LlDtPGi  187 (322)
T COG1161         130 KRKIRVGVVGYPNVGKSTLINRLLGKKVAK-TSNRPGTTKGIQWIKLDDG----IYLLDTPGI  187 (322)
T ss_pred             ccceEEEEEcCCCCcHHHHHHHHhccccee-eCCCCceecceEEEEcCCC----eEEecCCCc
Confidence            345789999999999999999999977633 3334466666666666553    899999993

>TIGR00092 GTP-binding protein YchF

Probab=98.59  E-value=1.7e-07  Score=72.76  Aligned_cols=84  Identities=14%  Similarity=-0.000  Sum_probs=54.1

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcCCC-CCCCccccceeEEEEEEEecCC--------------cEEEEEEEeCCChhhh--
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRGQF-DPTSKVTVGASFLSQTIALQDS--------------TTVKFEIWDTAGQERY--   96 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~l~D~~g~~~~--   96 (200)
                      +++.|+|.|++|||||+++|++... .....+..+.......+.+++.              .+.++.+.|.||.-.-  
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs   82 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS   82 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence            6899999999999999999999765 3322222222222222333221              2347899999994321  


Q ss_pred             --hh---cccccccCccEEEEEEeCC
Q 028986           97 --AA---LAPLYYRGAAVAVVVYDIT  117 (200)
Q Consensus        97 --~~---~~~~~~~~~d~~i~v~d~~  117 (200)
                        ..   ..-..++++|+++.|+++.
T Consensus        83 ~g~Glgn~fL~~ir~~d~l~hVvr~f  108 (368)
T TIGR00092        83 KGEGLGNQFLANIREVDIIQHVVRCF  108 (368)
T ss_pred             cccCcchHHHHHHHhCCEEEEEEeCC
Confidence              11   2222467899999999985

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>cd01859 MJ1464 MJ1464

Probab=98.59  E-value=2.3e-07  Score=64.12  Aligned_cols=56  Identities=23%  Similarity=0.253  Sum_probs=37.9

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCC
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAG   92 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g   92 (200)
                      ...+++++|.+++|||||+|+|.+..... ..++.+.+.....+.. +   ..+.+|||||
T Consensus       100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~-~~~~~~~t~~~~~~~~-~---~~~~~~DtpG  155 (156)
T cd01859         100 KEGKVGVVGYPNVGKSSIINALKGRHSAS-TSPSPGYTKGEQLVKI-T---SKIYLLDTPG  155 (156)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCccc-cCCCCCeeeeeEEEEc-C---CCEEEEECcC
Confidence            45689999999999999999999765332 2334444332222222 2   2589999998

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=98.54  E-value=1.1e-07  Score=65.40  Aligned_cols=23  Identities=43%  Similarity=0.658  Sum_probs=21.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQ   57 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~   57 (200)
                      .++++|++|||||||+|.|....
T Consensus        37 ~~vl~G~SGvGKSSLiN~L~~~~   59 (161)
T PF03193_consen   37 TSVLLGQSGVGKSSLINALLPEA   59 (161)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhc
Confidence            68899999999999999999964

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.54  E-value=3e-07  Score=63.53  Aligned_cols=57  Identities=21%  Similarity=0.321  Sum_probs=37.4

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCC
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAG   92 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g   92 (200)
                      ....+++++|.+|+|||||+|.|.+........ ..+.+.........    ..+.++||||
T Consensus        98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~-~~~~t~~~~~~~~~----~~~~liDtPG  154 (155)
T cd01849          98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGN-VPGTTTSQQEVKLD----NKIKLLDTPG  154 (155)
T ss_pred             ccCcEEEEEccCCCCHHHHHHHHHccccccccC-CCCcccceEEEEec----CCEEEEECCC
Confidence            356789999999999999999999865322211 11222222223332    2589999998

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=98.54  E-value=2e-06  Score=66.29  Aligned_cols=161  Identities=17%  Similarity=0.152  Sum_probs=96.2

Q ss_pred             CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCc--------------cccceeEEEEEEEecCCcEE-----------
Q 028986           29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSK--------------VTVGASFLSQTIALQDSTTV-----------   83 (200)
Q Consensus        29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~-----------   83 (200)
                      ..+..+.|.+.|+-+.|||||+-.|..+..+.-..              .....+.+.....+.+++.+           
T Consensus       113 ~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~  192 (527)
T COG5258         113 EAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEK  192 (527)
T ss_pred             CCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHH
Confidence            34567889999999999999998886543211100              11112222222333333222           


Q ss_pred             ---------EEEEEeCCChhhhhhcc--cccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCC
Q 028986           84 ---------KFEIWDTAGQERYAALA--PLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLH  152 (200)
Q Consensus        84 ---------~~~l~D~~g~~~~~~~~--~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~  152 (200)
                               -+.++|+.|++.|....  ..+-++.|..++++.+++.-+--. +..+..+.   .-+.|+++++||+|+.
T Consensus       193 ~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~t-kEHLgi~~---a~~lPviVvvTK~D~~  268 (527)
T COG5258         193 AAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMT-KEHLGIAL---AMELPVIVVVTKIDMV  268 (527)
T ss_pred             hHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhh-hHhhhhhh---hhcCCEEEEEEecccC
Confidence                     57799999999887543  334567999999999988632211 22222222   3478999999999996


Q ss_pred             CCCcCC--HHHHH----------------------HHHHHc---CCeEEEecCCCCCCHHHHHHHHHH
Q 028986          153 EKREVP--AQDGI----------------------EYAEKN---GMFFIETSAKTADNINQLFEVLIT  193 (200)
Q Consensus       153 ~~~~~~--~~~~~----------------------~~~~~~---~~~~~~~S~~~~~~i~~~~~~i~~  193 (200)
                      .+....  .+++.                      ..+.+.   -+|+|.+|+-+|.|++-+.+.+..
T Consensus       269 ~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~~  336 (527)
T COG5258         269 PDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFLL  336 (527)
T ss_pred             cHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHHh
Confidence            431110  01111                      111111   247999999999998766555443

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=98.52  E-value=5.5e-07  Score=80.29  Aligned_cols=114  Identities=21%  Similarity=0.157  Sum_probs=69.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCCCC------ccccceeEEEEEEEecCCcEEEEEEEeCCChh--------hhhhcc
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQFDPTS------KVTVGASFLSQTIALQDSTTVKFEIWDTAGQE--------RYAALA  100 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~--------~~~~~~  100 (200)
                      =.+|+|++|+||||+++.- +..++-..      ....+.+.. ..+-+.+    +-.++||+|..        .....|
T Consensus       113 WYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~-c~wwf~~----~avliDtaG~y~~~~~~~~~~~~~W  186 (1169)
T TIGR03348       113 WYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRN-CDWWFTD----EAVLIDTAGRYTTQDSDPEEDAAAW  186 (1169)
T ss_pred             CEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcc-cceEecC----CEEEEcCCCccccCCCcccccHHHH
Confidence            4689999999999999876 43332211      001111111 1111212    45689999921        122234


Q ss_pred             cccc---------cCccEEEEEEeCCCHH-----hH----HHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCC
Q 028986          101 PLYY---------RGAAVAVVVYDITSPD-----SF----NKAQYWVKELQKHGSPDIVMALVGNKADLHEK  154 (200)
Q Consensus       101 ~~~~---------~~~d~~i~v~d~~~~~-----s~----~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~  154 (200)
                      ..++         +..|++|+++|+.+-.     ..    ..++..+..+.+......|+.+|+||+|+...
T Consensus       187 ~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~G  258 (1169)
T TIGR03348       187 LGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLAG  258 (1169)
T ss_pred             HHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhcC
Confidence            3332         4489999999987431     11    24455566666666889999999999998654

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.52  E-value=3.9e-07  Score=68.91  Aligned_cols=100  Identities=17%  Similarity=0.144  Sum_probs=64.9

Q ss_pred             CCChh-hhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHH
Q 028986           90 TAGQE-RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEK  168 (200)
Q Consensus        90 ~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~  168 (200)
                      .|||- .........+..+|++++|+|+..+.+... ..+...+     .+.|+++|+||+|+.....  .....+....
T Consensus         4 fpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~-~~i~~~l-----~~kp~IiVlNK~DL~~~~~--~~~~~~~~~~   75 (276)
T TIGR03596         4 FPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRN-PMIDEIR-----GNKPRLIVLNKADLADPAV--TKQWLKYFEE   75 (276)
T ss_pred             ChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCC-hhHHHHH-----CCCCEEEEEEccccCCHHH--HHHHHHHHHH
Confidence            35653 223445667888999999999987643321 1111112     2578999999999854221  1111222333


Q ss_pred             cCCeEEEecCCCCCCHHHHHHHHHHhhcc
Q 028986          169 NGMFFIETSAKTADNINQLFEVLITCTSS  197 (200)
Q Consensus       169 ~~~~~~~~S~~~~~~i~~~~~~i~~~~~~  197 (200)
                      .+.+++.+|++.+.++.++.+.|.+.+.+
T Consensus        76 ~~~~vi~iSa~~~~gi~~L~~~i~~~~~~  104 (276)
T TIGR03596        76 KGIKALAINAKKGKGVKKIIKAAKKLLKE  104 (276)
T ss_pred             cCCeEEEEECCCcccHHHHHHHHHHHHHH
Confidence            45678999999999999999998877653

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>PRK14974 cell division protein FtsY; Provisional

Probab=98.49  E-value=2.8e-07  Score=71.08  Aligned_cols=93  Identities=14%  Similarity=0.152  Sum_probs=55.2

Q ss_pred             EEEEEEeCCChhhh----hhccccc--ccCccEEEEEEeCCCHH-hHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCC
Q 028986           83 VKFEIWDTAGQERY----AALAPLY--YRGAAVAVVVYDITSPD-SFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKR  155 (200)
Q Consensus        83 ~~~~l~D~~g~~~~----~~~~~~~--~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~  155 (200)
                      +.+.++||+|....    ......+  ..+.|.+++|+|+.... ..+.+..|...+      + .--+|+||.|....-
T Consensus       223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~~------~-~~giIlTKlD~~~~~  295 (336)
T PRK14974        223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAV------G-IDGVILTKVDADAKG  295 (336)
T ss_pred             CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhcC------C-CCEEEEeeecCCCCc
Confidence            46899999995321    1111121  12468889999998653 233333332211      1 145778999974322


Q ss_pred             cCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Q 028986          156 EVPAQDGIEYAEKNGMFFIETSAKTADNINQLF  188 (200)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~  188 (200)
                          -.+...+...+.|+.+++  +|++++++.
T Consensus       296 ----G~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~  322 (336)
T PRK14974        296 ----GAALSIAYVIGKPILFLG--VGQGYDDLI  322 (336)
T ss_pred             ----cHHHHHHHHHCcCEEEEe--CCCChhhcc
Confidence                234455556788988887  688887764

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.48  E-value=4.3e-07  Score=61.74  Aligned_cols=76  Identities=26%  Similarity=0.311  Sum_probs=51.8

Q ss_pred             ccccCccEEEEEEeCCCHHhHH--HHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCC
Q 028986          102 LYYRGAAVAVVVYDITSPDSFN--KAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAK  179 (200)
Q Consensus       102 ~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~  179 (200)
                      ..++.+|++++|+|+.++.+..  .+..|+..   . ..+.|+++|+||+|+.....  .....+.....+..++++|++
T Consensus         7 ~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~---~-~~~k~~iivlNK~DL~~~~~--~~~~~~~~~~~~~~ii~iSa~   80 (141)
T cd01857           7 RVVERSDIVVQIVDARNPLLFRPPDLERYVKE---V-DPRKKNILLLNKADLLTEEQ--RKAWAEYFKKEGIVVVFFSAL   80 (141)
T ss_pred             HHHhhCCEEEEEEEccCCcccCCHHHHHHHHh---c-cCCCcEEEEEechhcCCHHH--HHHHHHHHHhcCCeEEEEEec
Confidence            3567899999999998875433  33333332   2 24679999999999854322  223345555667789999999


Q ss_pred             CCCC
Q 028986          180 TADN  183 (200)
Q Consensus       180 ~~~~  183 (200)
                      ++.+
T Consensus        81 ~~~~   84 (141)
T cd01857          81 KENA   84 (141)
T ss_pred             CCCc
Confidence            8764

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.46  E-value=2e-06  Score=66.18  Aligned_cols=92  Identities=17%  Similarity=0.194  Sum_probs=54.9

Q ss_pred             EEEEEEeCCChhh--------hhhcc---cc-cccCccEEEEEEeCCCH-HhHHHHHHHHHHHHHcCCCCCeEEEEEeCC
Q 028986           83 VKFEIWDTAGQER--------YAALA---PL-YYRGAAVAVVVYDITSP-DSFNKAQYWVKELQKHGSPDIVMALVGNKA  149 (200)
Q Consensus        83 ~~~~l~D~~g~~~--------~~~~~---~~-~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~  149 (200)
                      +.+.++||||...        .....   .. .-...+..++|+|++.. +.+..+..+...+       -+.-+|+||.
T Consensus       197 ~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f~~~~-------~~~giIlTKl  269 (318)
T PRK10416        197 IDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAFHEAV-------GLTGIILTKL  269 (318)
T ss_pred             CCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHHHhhC-------CCCEEEEECC
Confidence            5799999999532        11111   11 12346788999999964 2333333322111       1246788999


Q ss_pred             CCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHH
Q 028986          150 DLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQL  187 (200)
Q Consensus       150 D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~  187 (200)
                      |....    .-.+...+...++|+.+++  +|++++++
T Consensus       270 D~t~~----~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl  301 (318)
T PRK10416        270 DGTAK----GGVVFAIADELGIPIKFIG--VGEGIDDL  301 (318)
T ss_pred             CCCCC----ccHHHHHHHHHCCCEEEEe--CCCChhhC
Confidence            95322    2244555667799999888  67777665

>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]

Probab=98.46  E-value=5.5e-07  Score=69.10  Aligned_cols=174  Identities=13%  Similarity=0.163  Sum_probs=97.6

Q ss_pred             CCccccCCCCCCCCceeeEEEEcCCCCcHHHHHHHHHcCCC------------------CCCCccccceeEE--------
Q 028986           18 LNNLENAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQF------------------DPTSKVTVGASFL--------   71 (200)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~------------------~~~~~~~~~~~~~--------   71 (200)
                      ...+......+....+++|+|+|.-.+|||||+-.|...+.                  ..-...+.+.+..        
T Consensus       118 ~~~liRk~~~~~DF~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNv  197 (641)
T KOG0463|consen  118 EVWLIRKPPTEKDFIEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNV  197 (641)
T ss_pred             eEEEEeCCCCCccceeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeecccccc
Confidence            33444555566778899999999999999999976654331                  1111111221111        


Q ss_pred             ----------EEEEEecCCcEEEEEEEeCCChhhhhhcccccc--cCccEEEEEEeCCCHHhHHHH-HHHHHHHHHcCCC
Q 028986           72 ----------SQTIALQDSTTVKFEIWDTAGQERYAALAPLYY--RGAAVAVVVYDITSPDSFNKA-QYWVKELQKHGSP  138 (200)
Q Consensus        72 ----------~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~--~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~  138 (200)
                                ...+.+.....--++++|..|++.|....-.-+  +-.|.-++++-++..  .-.+ +..+....   ..
T Consensus       198 VNKPD~Hg~~LdWvkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaG--IiGmTKEHLgLAL---aL  272 (641)
T KOG0463|consen  198 VNKPDPHGHNLDWVKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAG--IIGMTKEHLGLAL---AL  272 (641)
T ss_pred             ccCCCCCCCcccceeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEeccccc--ceeccHHhhhhhh---hh
Confidence                      111222222223578999999998876543332  235777777766543  1111 11111111   33


Q ss_pred             CCeEEEEEeCCCCCCCCcCCHHHHH---H--------------------------HHHHcCCeEEEecCCCCCCHHHHHH
Q 028986          139 DIVMALVGNKADLHEKREVPAQDGI---E--------------------------YAEKNGMFFIETSAKTADNINQLFE  189 (200)
Q Consensus       139 ~~p~iiv~nK~D~~~~~~~~~~~~~---~--------------------------~~~~~~~~~~~~S~~~~~~i~~~~~  189 (200)
                      .+|+++|++|+|+...+.. .+..+   +                          |..+.-|++|.+|-.+|.|++-+. 
T Consensus       273 ~VPVfvVVTKIDMCPANiL-qEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLk-  350 (641)
T KOG0463|consen  273 HVPVFVVVTKIDMCPANIL-QETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLK-  350 (641)
T ss_pred             cCcEEEEEEeeccCcHHHH-HHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHH-
Confidence            6788888899998654321 11111   1                          111223578999999999987544 


Q ss_pred             HHHHhhccc
Q 028986          190 VLITCTSSY  198 (200)
Q Consensus       190 ~i~~~~~~~  198 (200)
                      ..+..+.-+
T Consensus       351 mFLNlls~R  359 (641)
T KOG0463|consen  351 MFLNLLSLR  359 (641)
T ss_pred             HHHhhcCcc
Confidence            344444433

>cd03112 CobW_like The function of this protein family is unkown

Probab=98.45  E-value=1.9e-06  Score=59.72  Aligned_cols=63  Identities=13%  Similarity=0.059  Sum_probs=36.5

Q ss_pred             EEEEEEeCCChhhhhhcc--------cccccCccEEEEEEeCCCHHh-HHHHHHHHHHHHHcCCCCCeEEEEEeCCCC
Q 028986           83 VKFEIWDTAGQERYAALA--------PLYYRGAAVAVVVYDITSPDS-FNKAQYWVKELQKHGSPDIVMALVGNKADL  151 (200)
Q Consensus        83 ~~~~l~D~~g~~~~~~~~--------~~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~  151 (200)
                      ....++|++|..+-....        ....-..|.+++++|+.+-.. ......+..++...      =++|+||+|+
T Consensus        87 ~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~a------d~ivlnk~dl  158 (158)
T cd03112          87 FDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFA------DRILLNKTDL  158 (158)
T ss_pred             CCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHC------CEEEEecccC
Confidence            577899999953211111        112334789999999875422 22223344444433      2578999995

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]

Probab=98.43  E-value=7e-07  Score=73.81  Aligned_cols=115  Identities=18%  Similarity=0.148  Sum_probs=76.6

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHcCCC--------------CCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhh
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVRGQF--------------DPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYA   97 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~   97 (200)
                      ..-+|+++.+-.=|||||+..|....-              ......+.+.+....-+.... ..+.+.++|+||+-++.
T Consensus         8 ~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~-~~~~~nlidspghvdf~   86 (887)
T KOG0467|consen    8 GIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLH-KDYLINLIDSPGHVDFS   86 (887)
T ss_pred             ceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeecccccccc-CceEEEEecCCCccchh
Confidence            344899999999999999999986431              111112223322222223322 33789999999999999


Q ss_pred             hcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCC
Q 028986           98 ALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADL  151 (200)
Q Consensus        98 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~  151 (200)
                      ........-+|++++++|+...-.-+..    ..+++....+..+++|+||+|.
T Consensus        87 sevssas~l~d~alvlvdvvegv~~qt~----~vlrq~~~~~~~~~lvinkidr  136 (887)
T KOG0467|consen   87 SEVSSASRLSDGALVLVDVVEGVCSQTY----AVLRQAWIEGLKPILVINKIDR  136 (887)
T ss_pred             hhhhhhhhhcCCcEEEEeeccccchhHH----HHHHHHHHccCceEEEEehhhh
Confidence            9999999999999999999865322221    1222222334557899999994

>PRK01889 GTPase RsgA; Reviewed

Probab=98.42  E-value=1.3e-06  Score=68.35  Aligned_cols=84  Identities=17%  Similarity=0.160  Sum_probs=59.7

Q ss_pred             cccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHH-HcCCeEEEecCCCC
Q 028986          103 YYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAE-KNGMFFIETSAKTA  181 (200)
Q Consensus       103 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~S~~~~  181 (200)
                      ...++|.+++|+++...-....+..++..+...   +++.++|+||+|+....+   +....+.. ..+.+++.+|++++
T Consensus       109 iaANvD~vliV~s~~p~~~~~~ldr~L~~a~~~---~i~piIVLNK~DL~~~~~---~~~~~~~~~~~g~~Vi~vSa~~g  182 (356)
T PRK01889        109 IAANVDTVFIVCSLNHDFNLRRIERYLALAWES---GAEPVIVLTKADLCEDAE---EKIAEVEALAPGVPVLAVSALDG  182 (356)
T ss_pred             EEEeCCEEEEEEecCCCCChhHHHHHHHHHHHc---CCCEEEEEEChhcCCCHH---HHHHHHHHhCCCCcEEEEECCCC
Confidence            467899999999997544445566666665544   567789999999965411   11122221 34678999999999


Q ss_pred             CCHHHHHHHHH
Q 028986          182 DNINQLFEVLI  192 (200)
Q Consensus       182 ~~i~~~~~~i~  192 (200)
                      .|++++..+|.
T Consensus       183 ~gl~~L~~~L~  193 (356)
T PRK01889        183 EGLDVLAAWLS  193 (356)
T ss_pred             ccHHHHHHHhh
Confidence            99999988874

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.42  E-value=7.1e-07  Score=67.88  Aligned_cols=101  Identities=18%  Similarity=0.170  Sum_probs=65.6

Q ss_pred             eCCChhh-hhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHH
Q 028986           89 DTAGQER-YAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAE  167 (200)
Q Consensus        89 D~~g~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~  167 (200)
                      -.|||-. -.......+..+|++++|+|+..+.+...  .++....    .+.|+++|+||+|+.....  .+...++..
T Consensus         6 wfpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~----~~kp~iiVlNK~DL~~~~~--~~~~~~~~~   77 (287)
T PRK09563          6 WFPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKII----GNKPRLLILNKSDLADPEV--TKKWIEYFE   77 (287)
T ss_pred             CcHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh----CCCCEEEEEEchhcCCHHH--HHHHHHHHH
Confidence            3567642 23444667888999999999987643221  1111111    1578999999999853211  112223333


Q ss_pred             HcCCeEEEecCCCCCCHHHHHHHHHHhhcc
Q 028986          168 KNGMFFIETSAKTADNINQLFEVLITCTSS  197 (200)
Q Consensus       168 ~~~~~~~~~S~~~~~~i~~~~~~i~~~~~~  197 (200)
                      ..+.+++.+|++.+.+++++.+.|.+.+.+
T Consensus        78 ~~~~~vi~vSa~~~~gi~~L~~~l~~~l~~  107 (287)
T PRK09563         78 EQGIKALAINAKKGQGVKKILKAAKKLLKE  107 (287)
T ss_pred             HcCCeEEEEECCCcccHHHHHHHHHHHHHH
Confidence            446778999999999999999988877643

>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.41  E-value=2e-07  Score=69.52  Aligned_cols=162  Identities=15%  Similarity=0.149  Sum_probs=98.3

Q ss_pred             CCCceeeEEEEcCCCCcHHHHHHHHHcCC---CCCC--Cccccc-----------------------------eeEEEEE
Q 028986           29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQ---FDPT--SKVTVG-----------------------------ASFLSQT   74 (200)
Q Consensus        29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~---~~~~--~~~~~~-----------------------------~~~~~~~   74 (200)
                      .++..++|.-+|+-.-||||+++++.+-.   |...  .+.+..                             .+.....
T Consensus        34 sRQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~  113 (466)
T KOG0466|consen   34 SRQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCD  113 (466)
T ss_pred             hheeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcc
Confidence            34678999999999999999998886521   0000  000000                             0000000


Q ss_pred             EEecCCc---EEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCH----HhHHHHHHHHHHHHHcCCCCCeEEEEEe
Q 028986           75 IALQDST---TVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSP----DSFNKAQYWVKELQKHGSPDIVMALVGN  147 (200)
Q Consensus        75 ~~~~~~~---~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~i~~~~~~~~p~iiv~n  147 (200)
                      ..-..+.   -..+.+.|.||++-.....-.-..-.|++++++..+..    .+-+.+.. .+ +.+.    ..++++-|
T Consensus       114 ~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaa-ve-iM~L----khiiilQN  187 (466)
T KOG0466|consen  114 RPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAA-VE-IMKL----KHIIILQN  187 (466)
T ss_pred             cCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHH-HH-Hhhh----ceEEEEec
Confidence            0000110   13678999999986655444334446888888877643    33333221 11 1111    23889999


Q ss_pred             CCCCCCCCcC--CHHHHHHHHHH---cCCeEEEecCCCCCCHHHHHHHHHHhhc
Q 028986          148 KADLHEKREV--PAQDGIEYAEK---NGMFFIETSAKTADNINQLFEVLITCTS  196 (200)
Q Consensus       148 K~D~~~~~~~--~~~~~~~~~~~---~~~~~~~~S~~~~~~i~~~~~~i~~~~~  196 (200)
                      |+|+..+.+.  ..+++.+|.+.   .++|++++||.-..|++-+.++|++++.
T Consensus       188 KiDli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIP  241 (466)
T KOG0466|consen  188 KIDLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIP  241 (466)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCC
Confidence            9999765332  23455556554   3679999999999999999999998874

>PRK12288 GTPase RsgA; Reviewed

Probab=98.41  E-value=6.4e-07  Score=69.64  Aligned_cols=56  Identities=20%  Similarity=0.337  Sum_probs=34.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCCCCCCCcccc----c--eeEEEEEEEecCCcEEEEEEEeCCChhh
Q 028986           36 LVLLGDSGVGKSCIVLRFVRGQFDPTSKVTV----G--ASFLSQTIALQDSTTVKFEIWDTAGQER   95 (200)
Q Consensus        36 i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~l~D~~g~~~   95 (200)
                      ++|+|++|||||||+|+|.+...........    +  ++.....+.+..+.    .++||||..+
T Consensus       208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~----~liDTPGir~  269 (347)
T PRK12288        208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG----DLIDSPGVRE  269 (347)
T ss_pred             EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC----EEEECCCCCc
Confidence            7899999999999999999864322211111    1  12222223333332    4899999654

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=98.39  E-value=2.4e-06  Score=64.35  Aligned_cols=93  Identities=15%  Similarity=0.150  Sum_probs=55.7

Q ss_pred             EEEEEEeCCChhhhhhc-----------cc-ccccCccEEEEEEeCCCH-HhHHHHHHHHHHHHHcCCCCCeEEEEEeCC
Q 028986           83 VKFEIWDTAGQERYAAL-----------AP-LYYRGAAVAVVVYDITSP-DSFNKAQYWVKELQKHGSPDIVMALVGNKA  149 (200)
Q Consensus        83 ~~~~l~D~~g~~~~~~~-----------~~-~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~  149 (200)
                      +.+.++||||.......           .. ..-..+|.+++|+|++.. +.+.....+...+    .   +.-+|+||.
T Consensus       155 ~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~~~~----~---~~g~IlTKl  227 (272)
T TIGR00064       155 IDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFNEAV----G---LTGIILTKL  227 (272)
T ss_pred             CCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHHHHhhC----C---CCEEEEEcc
Confidence            57899999995422111           11 112247899999999854 3333333332211    1   246788999


Q ss_pred             CCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Q 028986          150 DLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF  188 (200)
Q Consensus       150 D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~  188 (200)
                      |....-    -.+.......+.|+.+++  +|++++++-
T Consensus       228 De~~~~----G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~  260 (272)
T TIGR00064       228 DGTAKG----GIILSIAYELKLPIKFIG--VGEKIDDLA  260 (272)
T ss_pred             CCCCCc----cHHHHHHHHHCcCEEEEe--CCCChHhCc
Confidence            964332    234555556688888888  677676653

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]

Probab=98.38  E-value=2e-05  Score=63.51  Aligned_cols=83  Identities=16%  Similarity=0.130  Sum_probs=56.6

Q ss_pred             EEEEEEeCCC-------------hhhhhhcccccccCccEEEEEEeCCCHHhH-HHHHHHHHHHHHcCCCCCeEEEEEeC
Q 028986           83 VKFEIWDTAG-------------QERYAALAPLYYRGAAVAVVVYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNK  148 (200)
Q Consensus        83 ~~~~l~D~~g-------------~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~~~~p~iiv~nK  148 (200)
                      -++.+.|.||             .+.......+++.+.+++|+|+--.+-+.- ..+..   .+.+....+...|+|++|
T Consensus       412 qRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAERSnVTD---LVsq~DP~GrRTIfVLTK  488 (980)
T KOG0447|consen  412 QRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAERSIVTD---LVSQMDPHGRRTIFVLTK  488 (980)
T ss_pred             ceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchhhhhHHH---HHHhcCCCCCeeEEEEee
Confidence            3788999999             233345667889999999999854432111 12222   233344557779999999


Q ss_pred             CCCCCCCcCCHHHHHHHHHH
Q 028986          149 ADLHEKREVPAQDGIEYAEK  168 (200)
Q Consensus       149 ~D~~~~~~~~~~~~~~~~~~  168 (200)
                      .|+.+.+-.....+++....
T Consensus       489 VDlAEknlA~PdRI~kIleG  508 (980)
T KOG0447|consen  489 VDLAEKNVASPSRIQQIIEG  508 (980)
T ss_pred             cchhhhccCCHHHHHHHHhc
Confidence            99988777777777777654

>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=98.37  E-value=1.3e-06  Score=66.07  Aligned_cols=87  Identities=14%  Similarity=0.144  Sum_probs=54.6

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEe--------------cCCcEEEEEEEeCCChh--
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIAL--------------QDSTTVKFEIWDTAGQE--   94 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~l~D~~g~~--   94 (200)
                      .+.+++.|+|.|++|||||+|+|+.....+...|..+.+...-.+.+              ....+..++++|++|.-  
T Consensus        18 ~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkG   97 (391)
T KOG1491|consen   18 GNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKG   97 (391)
T ss_pred             CCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccC
Confidence            36779999999999999999999987654333333333222222222              12345689999999831  


Q ss_pred             --hhhhccccc---ccCccEEEEEEeCC
Q 028986           95 --RYAALAPLY---YRGAAVAVVVYDIT  117 (200)
Q Consensus        95 --~~~~~~~~~---~~~~d~~i~v~d~~  117 (200)
                        .-..+-..|   ++.+|+++-|+++.
T Consensus        98 As~G~GLGN~FLs~iR~vDaifhVVr~f  125 (391)
T KOG1491|consen   98 ASAGEGLGNKFLSHIRHVDAIFHVVRAF  125 (391)
T ss_pred             cccCcCchHHHHHhhhhccceeEEEEec
Confidence              112222222   46688888887754

>PRK12289 GTPase RsgA; Reviewed

Probab=98.36  E-value=9.4e-07  Score=68.76  Aligned_cols=23  Identities=39%  Similarity=0.572  Sum_probs=20.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCCC
Q 028986           36 LVLLGDSGVGKSCIVLRFVRGQF   58 (200)
Q Consensus        36 i~i~G~~~sGKSsli~~l~~~~~   58 (200)
                      ++|+|++|||||||||+|.+...
T Consensus       175 ~v~iG~SgVGKSSLIN~L~~~~~  197 (352)
T PRK12289        175 TVVAGPSGVGKSSLINRLIPDVE  197 (352)
T ss_pred             EEEEeCCCCCHHHHHHHHcCccc
Confidence            79999999999999999997643

>PRK13695 putative NTPase; Provisional

Probab=98.34  E-value=1.9e-05  Score=55.63  Aligned_cols=82  Identities=13%  Similarity=0.058  Sum_probs=44.7

Q ss_pred             cccccCccEEEEEEeCCCH-HhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCC
Q 028986          101 PLYYRGAAVAVVVYDITSP-DSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAK  179 (200)
Q Consensus       101 ~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~  179 (200)
                      ...+..+++  +++|--.+ +...  ..+.+.+......+.|++++.+|...       ......+....+..++++   
T Consensus        91 ~~~l~~~~~--lllDE~~~~e~~~--~~~~~~l~~~~~~~~~~i~v~h~~~~-------~~~~~~i~~~~~~~i~~~---  156 (174)
T PRK13695         91 ERALEEADV--IIIDEIGKMELKS--PKFVKAVEEVLDSEKPVIATLHRRSV-------HPFVQEIKSRPGGRVYEL---  156 (174)
T ss_pred             HhccCCCCE--EEEECCCcchhhh--HHHHHHHHHHHhCCCeEEEEECchhh-------HHHHHHHhccCCcEEEEE---
Confidence            334556676  57784211 1111  22333333333446789999987532       123344444556777777   


Q ss_pred             CCCCHHHHHHHHHHhhc
Q 028986          180 TADNINQLFEVLITCTS  196 (200)
Q Consensus       180 ~~~~i~~~~~~i~~~~~  196 (200)
                      +.+|-+++...+++.++
T Consensus       157 ~~~~r~~~~~~~~~~~~  173 (174)
T PRK13695        157 TPENRDSLPFEILNRLK  173 (174)
T ss_pred             cchhhhhHHHHHHHHHh
Confidence            44555588888777653

>PRK13796 GTPase YqeH; Provisional

Probab=98.33  E-value=4.8e-06  Score=65.41  Aligned_cols=94  Identities=27%  Similarity=0.300  Sum_probs=60.9

Q ss_pred             hhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHH----HHHHHcC
Q 028986           95 RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGI----EYAEKNG  170 (200)
Q Consensus        95 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~----~~~~~~~  170 (200)
                      .+...........+.+++|+|+.+..     ..|...+.+.. .+.|+++|+||+|+... ....+.+.    .+++..+
T Consensus        58 ~~~~~l~~i~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~-~~kpviLViNK~DLl~~-~~~~~~i~~~l~~~~k~~g  130 (365)
T PRK13796         58 DFLKLLNGIGDSDALVVNVVDIFDFN-----GSWIPGLHRFV-GNNPVLLVGNKADLLPK-SVKKNKVKNWLRQEAKELG  130 (365)
T ss_pred             HHHHHHHhhcccCcEEEEEEECccCC-----CchhHHHHHHh-CCCCEEEEEEchhhCCC-ccCHHHHHHHHHHHHHhcC
Confidence            44444444433344999999998742     22333444332 25689999999999643 22223333    3355556


Q ss_pred             C---eEEEecCCCCCCHHHHHHHHHHhh
Q 028986          171 M---FFIETSAKTADNINQLFEVLITCT  195 (200)
Q Consensus       171 ~---~~~~~S~~~~~~i~~~~~~i~~~~  195 (200)
                      +   .++.+||+++.|++++++.|.+..
T Consensus       131 ~~~~~v~~vSAk~g~gI~eL~~~I~~~~  158 (365)
T PRK13796        131 LRPVDVVLISAQKGHGIDELLEAIEKYR  158 (365)
T ss_pred             CCcCcEEEEECCCCCCHHHHHHHHHHhc
Confidence            5   589999999999999999997653

>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]

Probab=98.31  E-value=9.2e-06  Score=61.72  Aligned_cols=148  Identities=16%  Similarity=0.145  Sum_probs=93.9

Q ss_pred             CCCCCceeeEEEEcCCCCcHHHHHHHHHcC----------CCCCC----CccccceeEEEEEEEecCCcEEEEEEEeCCC
Q 028986           27 SDAKNLRVKLVLLGDSGVGKSCIVLRFVRG----------QFDPT----SKVTVGASFLSQTIALQDSTTVKFEIWDTAG   92 (200)
Q Consensus        27 ~~~~~~~~~i~i~G~~~sGKSsli~~l~~~----------~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g   92 (200)
                      -...+..+||.-+|+-.=|||||-.++..-          +|+..    .....+.+...-.+.+.... .++-=.|+||
T Consensus        48 f~R~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~-RhYaH~DCPG  126 (449)
T KOG0460|consen   48 FVRDKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAK-RHYAHTDCPG  126 (449)
T ss_pred             cccCCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccc-cccccCCCCc
Confidence            344577889999999999999998877531          11110    11222333333334443222 4566789999


Q ss_pred             hhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCc---CCHHHHHHHHHHc
Q 028986           93 QERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKRE---VPAQDGIEYAEKN  169 (200)
Q Consensus        93 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~---~~~~~~~~~~~~~  169 (200)
                      +.+|-.....-..+-|+.|+|+.+.+.. +.+.+..+...++..-  ..+++.+||.|+.++.+   ..+-+++++..++
T Consensus       127 HADYIKNMItGaaqMDGaILVVaatDG~-MPQTrEHlLLArQVGV--~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~  203 (449)
T KOG0460|consen  127 HADYIKNMITGAAQMDGAILVVAATDGP-MPQTREHLLLARQVGV--KHIVVFINKVDLVDDPEMLELVEMEIRELLSEF  203 (449)
T ss_pred             hHHHHHHhhcCccccCceEEEEEcCCCC-CcchHHHHHHHHHcCC--ceEEEEEecccccCCHHHHHHHHHHHHHHHHHc
Confidence            9999888888788899999999999853 3333443333343321  33788889999975433   3345556666666


Q ss_pred             C-----CeEEEecC
Q 028986          170 G-----MFFIETSA  178 (200)
Q Consensus       170 ~-----~~~~~~S~  178 (200)
                      +     +|++.=||
T Consensus       204 gf~Gd~~PvI~GSA  217 (449)
T KOG0460|consen  204 GFDGDNTPVIRGSA  217 (449)
T ss_pred             CCCCCCCCeeecch
Confidence            4     36776554

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=98.30  E-value=3.8e-06  Score=58.71  Aligned_cols=136  Identities=15%  Similarity=0.230  Sum_probs=66.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeC-CCh--------------------
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDT-AGQ--------------------   93 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~-~g~--------------------   93 (200)
                      ||+|.|++|+|||||+++++....... .+.  ..+....+. .++...-+.+.|. .|.                    
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~l~~~~-~~v--~Gf~t~evr-~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v   76 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEELKKKG-LPV--GGFYTEEVR-ENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFV   76 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHHHHHTC-GGE--EEEEEEEEE-TTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE
T ss_pred             CEEEECcCCCCHHHHHHHHHHHhhccC-Ccc--ceEEeeccc-CCCceEEEEEEECcCCCccccccccccccccCCCEEE
Confidence            689999999999999999987421111 111  112222222 3444445555565 331                    


Q ss_pred             --hhhhhcccccc----cCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHH
Q 028986           94 --ERYAALAPLYY----RGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAE  167 (200)
Q Consensus        94 --~~~~~~~~~~~----~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~  167 (200)
                        +.+.......+    ..+|  ++++|--.+-.+ ....|.+.+...-..+.|++.++.+.-.       .....++..
T Consensus        77 ~~e~fe~~~~~~L~~~~~~~~--liviDEIG~mEl-~~~~F~~~v~~~l~s~~~vi~vv~~~~~-------~~~l~~i~~  146 (168)
T PF03266_consen   77 DLESFEEIGLPALRNALSSSD--LIVIDEIGKMEL-KSPGFREAVEKLLDSNKPVIGVVHKRSD-------NPFLEEIKR  146 (168)
T ss_dssp             -HHHHHCCCCCCCHHHHHCCH--EEEE---STTCC-C-CHHHHHHHHHHCTTSEEEEE--SS---------SCCHHHHHT
T ss_pred             cHHHHHHHHHHHHHhhcCCCC--EEEEeccchhhh-cCHHHHHHHHHHHcCCCcEEEEEecCCC-------cHHHHHHHh
Confidence              11222222222    3445  777885543111 1123444444433567888888876620       113455666


Q ss_pred             HcCCeEEEecCCCCCCH
Q 028986          168 KNGMFFIETSAKTADNI  184 (200)
Q Consensus       168 ~~~~~~~~~S~~~~~~i  184 (200)
                      ..++.+++++......+
T Consensus       147 ~~~~~i~~vt~~NRd~l  163 (168)
T PF03266_consen  147 RPDVKIFEVTEENRDAL  163 (168)
T ss_dssp             TTTSEEEE--TTTCCCH
T ss_pred             CCCcEEEEeChhHHhhH
Confidence            67888999887766554

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>PRK13796 GTPase YqeH; Provisional

Probab=98.29  E-value=1.5e-06  Score=68.29  Aligned_cols=56  Identities=25%  Similarity=0.358  Sum_probs=36.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcCCCC----CCCccccceeEEEEEEEecCCcEEEEEEEeCCCh
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRGQFD----PTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ   93 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~   93 (200)
                      .++.|+|.+|||||||+|+|......    .......+++.....+.+.++    ..++||||.
T Consensus       161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~----~~l~DTPGi  220 (365)
T PRK13796        161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG----SFLYDTPGI  220 (365)
T ss_pred             CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC----cEEEECCCc
Confidence            47999999999999999999864311    111222334444444444332    479999995

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.27  E-value=2.1e-06  Score=67.32  Aligned_cols=56  Identities=23%  Similarity=0.378  Sum_probs=36.3

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcCCCC----CCCccccceeEEEEEEEecCCcEEEEEEEeCCCh
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRGQFD----PTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ   93 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~   93 (200)
                      .+++++|.+|+|||||+|+|.+....    .......+.+.....+...+    .+.++||||.
T Consensus       155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~----~~~l~DtPG~  214 (360)
T TIGR03597       155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDD----GHSLYDTPGI  214 (360)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCC----CCEEEECCCC
Confidence            47999999999999999999985321    11222233333333333322    2579999994

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.26  E-value=2.3e-06  Score=63.60  Aligned_cols=24  Identities=33%  Similarity=0.389  Sum_probs=21.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQF   58 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~~   58 (200)
                      .++++|++|+|||||+|+|.+...
T Consensus       122 ~~~~~G~sgvGKStLiN~L~~~~~  145 (245)
T TIGR00157       122 ISVFAGQSGVGKSSLINALDPSVK  145 (245)
T ss_pred             EEEEECCCCCCHHHHHHHHhhhhh
Confidence            688999999999999999998643

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.24  E-value=2.2e-06  Score=64.39  Aligned_cols=57  Identities=26%  Similarity=0.240  Sum_probs=34.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCC------CCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhh
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQF------DPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQER   95 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~   95 (200)
                      -.+++|++|+|||||+|+|.....      .......--++.....+.++.+.    .++||||..+
T Consensus       166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG----~iiDTPGf~~  228 (301)
T COG1162         166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG----WIIDTPGFRS  228 (301)
T ss_pred             eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC----EEEeCCCCCc
Confidence            467899999999999999987432      11111111222223334443344    4699999654

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.19  E-value=1.9e-05  Score=61.88  Aligned_cols=141  Identities=11%  Similarity=0.091  Sum_probs=70.0

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcCCCCC---CCccccceeE------------------EEEEEEe--------cCCcEEE
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRGQFDP---TSKVTVGASF------------------LSQTIAL--------QDSTTVK   84 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~~~~~---~~~~~~~~~~------------------~~~~~~~--------~~~~~~~   84 (200)
                      -.++++|++|+||||++..|.......   ....-...+.                  .......        ..-....
T Consensus       138 ~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~D  217 (374)
T PRK14722        138 GVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNKH  217 (374)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCCC
Confidence            368899999999999999997532100   0000000000                  0000000        0112247


Q ss_pred             EEEEeCCChhhhh----hccccc--ccCccEEEEEEeCCCH-HhHHHHHHHHHHHHHcCCCC--CeEEEEEeCCCCCCCC
Q 028986           85 FEIWDTAGQERYA----ALAPLY--YRGAAVAVVVYDITSP-DSFNKAQYWVKELQKHGSPD--IVMALVGNKADLHEKR  155 (200)
Q Consensus        85 ~~l~D~~g~~~~~----~~~~~~--~~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~--~p~iiv~nK~D~~~~~  155 (200)
                      +.++||+|.....    .....+  .....-.++|++++.. +.+..+..-+..........  -+-=+|+||.|.... 
T Consensus       218 lVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~~-  296 (374)
T PRK14722        218 MVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEASN-  296 (374)
T ss_pred             EEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCCC-
Confidence            8999999954221    111111  1223456889998864 44444432223222110000  123466799996432 


Q ss_pred             cCCHHHHHHHHHHcCCeEEEecC
Q 028986          156 EVPAQDGIEYAEKNGMFFIETSA  178 (200)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~S~  178 (200)
                         .-.+...+...+.|+.+++.
T Consensus       297 ---~G~~l~~~~~~~lPi~yvt~  316 (374)
T PRK14722        297 ---LGGVLDTVIRYKLPVHYVST  316 (374)
T ss_pred             ---ccHHHHHHHHHCcCeEEEec
Confidence               33455666666777665553

>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]

Probab=98.19  E-value=2.4e-06  Score=66.49  Aligned_cols=118  Identities=16%  Similarity=0.154  Sum_probs=83.1

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHcCC--------CCCCCc--------cccceeEEEEEEEecCCcEEEEEEEeCCChhh
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVRGQ--------FDPTSK--------VTVGASFLSQTIALQDSTTVKFEIWDTAGQER   95 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~~~--------~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~   95 (200)
                      +--+|.|+.+-.+||||.-.+++...        .+....        ...+.+...--+.++... .++.++||||+-+
T Consensus        36 kirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg-~rinlidtpghvd  114 (753)
T KOG0464|consen   36 KIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKG-HRINLIDTPGHVD  114 (753)
T ss_pred             hhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeeccccc-ceEeeecCCCcce
Confidence            33489999999999999988876421        111111        111233333334444333 7899999999999


Q ss_pred             hhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCC
Q 028986           96 YAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK  154 (200)
Q Consensus        96 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~  154 (200)
                      +.-..+..++--|+++.|||++..-.-+.+.-|    ++..+.++|-...+||+|....
T Consensus       115 f~leverclrvldgavav~dasagve~qtltvw----rqadk~~ip~~~finkmdk~~a  169 (753)
T KOG0464|consen  115 FRLEVERCLRVLDGAVAVFDASAGVEAQTLTVW----RQADKFKIPAHCFINKMDKLAA  169 (753)
T ss_pred             EEEEHHHHHHHhcCeEEEEeccCCcccceeeee----hhccccCCchhhhhhhhhhhhh
Confidence            988888999999999999999976444444444    5556778999999999997554

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=98.16  E-value=1.6e-05  Score=63.22  Aligned_cols=85  Identities=15%  Similarity=0.056  Sum_probs=46.2

Q ss_pred             EEEEEEeCCChhhhh----hccccc--ccCccEEEEEEeCCCHHh-HHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCC
Q 028986           83 VKFEIWDTAGQERYA----ALAPLY--YRGAAVAVVVYDITSPDS-FNKAQYWVKELQKHGSPDIVMALVGNKADLHEKR  155 (200)
Q Consensus        83 ~~~~l~D~~g~~~~~----~~~~~~--~~~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~  155 (200)
                      +.+.++||+|.....    .....+  ..+.|-+++|+|+..... .+.+..|    .+.   -.+.-+|+||.|....-
T Consensus       183 ~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F----~~~---~~~~g~IlTKlD~~arg  255 (429)
T TIGR01425       183 FDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAF----KDS---VDVGSVIITKLDGHAKG  255 (429)
T ss_pred             CCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHH----Hhc---cCCcEEEEECccCCCCc
Confidence            689999999943211    111111  224688999999876532 2222222    211   12356789999964321


Q ss_pred             cCCHHHHHHHHHHcCCeEEEecC
Q 028986          156 EVPAQDGIEYAEKNGMFFIETSA  178 (200)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~S~  178 (200)
                          -.+.......+.|+.+++.
T Consensus       256 ----G~aLs~~~~t~~PI~fig~  274 (429)
T TIGR01425       256 ----GGALSAVAATKSPIIFIGT  274 (429)
T ss_pred             ----cHHhhhHHHHCCCeEEEcC
Confidence                1234444455666665543

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=98.16  E-value=3.7e-06  Score=66.89  Aligned_cols=58  Identities=26%  Similarity=0.215  Sum_probs=43.9

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCCh
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ   93 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~   93 (200)
                      +..+.|.+||.|||||||+||+|.+.+.-.. ..|.+-+....++.+..    .+.+.|+||.
T Consensus       312 ~~~vtVG~VGYPNVGKSSTINaLvG~KkVsV-S~TPGkTKHFQTi~ls~----~v~LCDCPGL  369 (562)
T KOG1424|consen  312 KDVVTVGFVGYPNVGKSSTINALVGRKKVSV-SSTPGKTKHFQTIFLSP----SVCLCDCPGL  369 (562)
T ss_pred             CceeEEEeecCCCCchhHHHHHHhcCceeee-ecCCCCcceeEEEEcCC----CceecCCCCc
Confidence            3478999999999999999999999875433 34556665555555544    4788999993

>PRK00098 GTPase RsgA; Reviewed

Probab=98.14  E-value=6.7e-06  Score=62.88  Aligned_cols=24  Identities=38%  Similarity=0.434  Sum_probs=21.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQF   58 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~~   58 (200)
                      .++++|++|+|||||+|+|.+...
T Consensus       166 ~~~~~G~sgvGKStlin~l~~~~~  189 (298)
T PRK00098        166 VTVLAGQSGVGKSTLLNALAPDLE  189 (298)
T ss_pred             eEEEECCCCCCHHHHHHHHhCCcC
Confidence            588999999999999999998643

>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.14  E-value=8e-06  Score=60.42  Aligned_cols=63  Identities=19%  Similarity=0.374  Sum_probs=41.9

Q ss_pred             CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCc----cccceeEEEEEEEecCCcEEEEEEEeCCC
Q 028986           29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSK----VTVGASFLSQTIALQDSTTVKFEIWDTAG   92 (200)
Q Consensus        29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~D~~g   92 (200)
                      ...-.++|+-+|..|-|||||+..|++-.+.....    +............- .+..+++++.||.|
T Consensus        38 ~~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqE-snvrlKLtiv~tvG  104 (406)
T KOG3859|consen   38 SQGFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQE-SNVRLKLTIVDTVG  104 (406)
T ss_pred             hcCceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhh-cCeeEEEEEEeecc
Confidence            34568899999999999999999999977643322    22222222222211 22347889999999

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=98.13  E-value=2.6e-05  Score=55.93  Aligned_cols=86  Identities=15%  Similarity=0.123  Sum_probs=48.5

Q ss_pred             EEEEEEeCCChhhhh----hcccccc--cCccEEEEEEeCCCH-HhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCC
Q 028986           83 VKFEIWDTAGQERYA----ALAPLYY--RGAAVAVVVYDITSP-DSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKR  155 (200)
Q Consensus        83 ~~~~l~D~~g~~~~~----~~~~~~~--~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~  155 (200)
                      +.+.++||+|.....    .....++  ...+-+++|++++.. +.++.+..++..+    .  + -=+|+||.|.... 
T Consensus        84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~----~--~-~~lIlTKlDet~~-  155 (196)
T PF00448_consen   84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAF----G--I-DGLILTKLDETAR-  155 (196)
T ss_dssp             SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHS----S--T-CEEEEESTTSSST-
T ss_pred             CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhcc----c--C-ceEEEEeecCCCC-
Confidence            468999999942211    1111111  146789999999865 3334434333222    1  1 2356899995332 


Q ss_pred             cCCHHHHHHHHHHcCCeEEEecCC
Q 028986          156 EVPAQDGIEYAEKNGMFFIETSAK  179 (200)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~S~~  179 (200)
                         .-.+...+...+.|+-.++--
T Consensus       156 ---~G~~l~~~~~~~~Pi~~it~G  176 (196)
T PF00448_consen  156 ---LGALLSLAYESGLPISYITTG  176 (196)
T ss_dssp             ---THHHHHHHHHHTSEEEEEESS
T ss_pred             ---cccceeHHHHhCCCeEEEECC
Confidence               334566777788887776643

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.12  E-value=1.4e-05  Score=70.36  Aligned_cols=114  Identities=21%  Similarity=0.167  Sum_probs=64.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCCCCCC--Cc--cccceeEEEEEEEecCCcEEEEEEEeCCCh--------hhhhhccccc
Q 028986           36 LVLLGDSGVGKSCIVLRFVRGQFDPT--SK--VTVGASFLSQTIALQDSTTVKFEIWDTAGQ--------ERYAALAPLY  103 (200)
Q Consensus        36 i~i~G~~~sGKSsli~~l~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~--------~~~~~~~~~~  103 (200)
                      .+|+|++|+||||++...-. .|+-.  ..  ............-+.+    +-.++||.|.        +.....|..+
T Consensus       128 y~viG~pgsGKTtal~~sgl-~Fpl~~~~~~~~~~~~gT~~cdwwf~d----eaVlIDtaGry~~q~s~~~~~~~~W~~f  202 (1188)
T COG3523         128 YMVIGPPGSGKTTALLNSGL-QFPLAEQMGALGLAGPGTRNCDWWFTD----EAVLIDTAGRYITQDSADEVDRAEWLGF  202 (1188)
T ss_pred             eEEecCCCCCcchHHhcccc-cCcchhhhccccccCCCCcccCccccc----ceEEEcCCcceecccCcchhhHHHHHHH
Confidence            57999999999999754322 22111  00  0001111111122222    4578999882        1223444433


Q ss_pred             ---------ccCccEEEEEEeCCCHHh---H------HHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCC
Q 028986          104 ---------YRGAAVAVVVYDITSPDS---F------NKAQYWVKELQKHGSPDIVMALVGNKADLHEK  154 (200)
Q Consensus       104 ---------~~~~d~~i~v~d~~~~~s---~------~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~  154 (200)
                               .+..|++|+.+|+++--+   .      ..+..=+.++.+.-....|+++++||.|+...
T Consensus       203 L~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~G  271 (1188)
T COG3523         203 LGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLPG  271 (1188)
T ss_pred             HHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEeccccccc
Confidence                     456899999999874311   1      12233344555555778999999999999764

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.09  E-value=4.1e-05  Score=57.74  Aligned_cols=96  Identities=23%  Similarity=0.235  Sum_probs=69.8

Q ss_pred             hhcccccccCccEEEEEEeCCCHH-hHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEE
Q 028986           97 AALAPLYYRGAAVAVVVYDITSPD-SFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIE  175 (200)
Q Consensus        97 ~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  175 (200)
                      ..+...-..+.|-+++++.+.+|+ +...+.+++-.....   ++..++|+||+|+....+...++........+.+++.
T Consensus        70 n~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~---gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~  146 (301)
T COG1162          70 NVLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAG---GIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLF  146 (301)
T ss_pred             CceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHHc---CCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEE
Confidence            344455555677778888887764 556666665555443   6667888999999876554334566677778999999


Q ss_pred             ecCCCCCCHHHHHHHHHHhh
Q 028986          176 TSAKTADNINQLFEVLITCT  195 (200)
Q Consensus       176 ~S~~~~~~i~~~~~~i~~~~  195 (200)
                      +|++++.++.++..++...+
T Consensus       147 ~s~~~~~~~~~l~~~l~~~~  166 (301)
T COG1162         147 VSAKNGDGLEELAELLAGKI  166 (301)
T ss_pred             ecCcCcccHHHHHHHhcCCe
Confidence            99999999999998876553

>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]

Probab=98.09  E-value=4.4e-06  Score=60.21  Aligned_cols=115  Identities=17%  Similarity=0.192  Sum_probs=75.4

Q ss_pred             EEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHH----------hHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCC
Q 028986           83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPD----------SFNKAQYWVKELQKHG-SPDIVMALVGNKADL  151 (200)
Q Consensus        83 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~  151 (200)
                      +.+.+.|.+|+...+..|.+.+.+...+++++.++..+          -++.-..++..+.... ..+.++|+.+||.|+
T Consensus       199 iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNKkDl  278 (359)
T KOG0085|consen  199 IIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDL  278 (359)
T ss_pred             heeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEechhhh
Confidence            56789999999988899999999888888877666432          2333333444443332 456789999999999


Q ss_pred             CCCC----------------cCCHHHHHHHHHHc----CC------eEEEecCCCCCCHHHHHHHHHHhhcc
Q 028986          152 HEKR----------------EVPAQDGIEYAEKN----GM------FFIETSAKTADNINQLFEVLITCTSS  197 (200)
Q Consensus       152 ~~~~----------------~~~~~~~~~~~~~~----~~------~~~~~S~~~~~~i~~~~~~i~~~~~~  197 (200)
                      .+++                ..+.+.+++|..+.    +-      .--.+.|.+..|+.-+|..+.+.+.+
T Consensus       279 LEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq  350 (359)
T KOG0085|consen  279 LEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQ  350 (359)
T ss_pred             hhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHH
Confidence            6431                12233344444331    11      12457788899999999888776544

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.09  E-value=4.9e-06  Score=59.48  Aligned_cols=41  Identities=12%  Similarity=0.118  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHcCCeEE--EecCCCCCCHHHHHHHHHHhhcccC
Q 028986          159 AQDGIEYAEKNGMFFI--ETSAKTADNINQLFEVLITCTSSYC  199 (200)
Q Consensus       159 ~~~~~~~~~~~~~~~~--~~S~~~~~~i~~~~~~i~~~~~~~~  199 (200)
                      .+.++.+|..-.+..|  ++||.+.+-+.++++.+.+...+-+
T Consensus       145 VAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGm  187 (240)
T COG1126         145 VAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGM  187 (240)
T ss_pred             HHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCC
Confidence            3344444444444444  5999999999999999998877643

>KOG4273 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.08  E-value=9.4e-05  Score=54.09  Aligned_cols=116  Identities=20%  Similarity=0.237  Sum_probs=68.0

Q ss_pred             eeEEEEcCCCC--cHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEE
Q 028986           34 VKLVLLGDSGV--GKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAV  111 (200)
Q Consensus        34 ~~i~i~G~~~s--GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i  111 (200)
                      ..++|+|-+|+  ||.+|+.+|....+...........+...++.. ......+.+.-.+--.++.-.........-+++
T Consensus         5 p~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~-kyysadi~lcishicde~~lpn~~~a~pl~a~v   83 (418)
T KOG4273|consen    5 PCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDN-KYYSADINLCISHICDEKFLPNAEIAEPLQAFV   83 (418)
T ss_pred             ceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecc-eeeecceeEEeecccchhccCCcccccceeeEE
Confidence            46889999998  999999999988876655554444444433321 111112222211111111111111223346889


Q ss_pred             EEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCC
Q 028986          112 VVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLH  152 (200)
Q Consensus       112 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~  152 (200)
                      .+||.+....+..++.|+..-.-. ..++ .+.++||.|..
T Consensus        84 mvfdlse~s~l~alqdwl~htdin-sfdi-llcignkvdrv  122 (418)
T KOG4273|consen   84 MVFDLSEKSGLDALQDWLPHTDIN-SFDI-LLCIGNKVDRV  122 (418)
T ss_pred             EEEeccchhhhHHHHhhccccccc-cchh-heecccccccc
Confidence            999999999999999998743222 1122 35567999874

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.06  E-value=1.3e-05  Score=61.06  Aligned_cols=59  Identities=24%  Similarity=0.294  Sum_probs=35.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccc------cceeEEEEEEEecCCcEEEEEEEeCCChhhh
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVT------VGASFLSQTIALQDSTTVKFEIWDTAGQERY   96 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~   96 (200)
                      -.++++|++|+|||||+|.|.+..........      ...+.....+....+    ..++||||..++
T Consensus       162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~----~~liDtPG~~~~  226 (287)
T cd01854         162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG----GLLIDTPGFREF  226 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC----CEEEECCCCCcc
Confidence            36899999999999999999986433221111      111222222333222    258999998543

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.05  E-value=3.8e-05  Score=62.45  Aligned_cols=84  Identities=15%  Similarity=0.111  Sum_probs=46.5

Q ss_pred             EEEEEEeCCChhhhhhc-------ccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCC
Q 028986           83 VKFEIWDTAGQERYAAL-------APLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKR  155 (200)
Q Consensus        83 ~~~~l~D~~g~~~~~~~-------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~  155 (200)
                      +.+.|+||+|.......       .... . ....++|++....  ...+...+..+...    .+.-+|+||.|...  
T Consensus       429 ~DLVLIDTaG~s~~D~~l~eeL~~L~aa-~-~~a~lLVLpAtss--~~Dl~eii~~f~~~----~~~gvILTKlDEt~--  498 (559)
T PRK12727        429 YKLVLIDTAGMGQRDRALAAQLNWLRAA-R-QVTSLLVLPANAH--FSDLDEVVRRFAHA----KPQGVVLTKLDETG--  498 (559)
T ss_pred             CCEEEecCCCcchhhHHHHHHHHHHHHh-h-cCCcEEEEECCCC--hhHHHHHHHHHHhh----CCeEEEEecCcCcc--
Confidence            57899999994322111       1111 1 2345667776643  33333333333322    24568899999633  


Q ss_pred             cCCHHHHHHHHHHcCCeEEEecC
Q 028986          156 EVPAQDGIEYAEKNGMFFIETSA  178 (200)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~S~  178 (200)
                        ..-.+.......+.++.+++.
T Consensus       499 --~lG~aLsv~~~~~LPI~yvt~  519 (559)
T PRK12727        499 --RFGSALSVVVDHQMPITWVTD  519 (559)
T ss_pred             --chhHHHHHHHHhCCCEEEEeC
Confidence              234556666677887776664

>KOG2484 consensus GTPase [General function prediction only]

Probab=98.03  E-value=5.9e-06  Score=63.85  Aligned_cols=67  Identities=21%  Similarity=0.303  Sum_probs=49.3

Q ss_pred             cccCCCCCCCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCC
Q 028986           21 LENAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAG   92 (200)
Q Consensus        21 ~~~~~~~~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g   92 (200)
                      +++......-+..+++.|+|.|++||||+||+|......+.. ...+.+.....+..+.    .+.|+|.||
T Consensus       240 lgny~~~~~lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg-~~pGvT~smqeV~Ldk----~i~llDsPg  306 (435)
T KOG2484|consen  240 LGNYCRKGELKTSIRVGIIGYPNVGKSSVINSLKRRKACNVG-NVPGVTRSMQEVKLDK----KIRLLDSPG  306 (435)
T ss_pred             hcCcccccccCcceEeeeecCCCCChhHHHHHHHHhccccCC-CCccchhhhhheeccC----CceeccCCc
Confidence            334444445578999999999999999999999997764432 3456666566665543    588999999

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.98  E-value=2.7e-05  Score=61.13  Aligned_cols=86  Identities=12%  Similarity=0.050  Sum_probs=46.8

Q ss_pred             EEEEEEeCCChhhhh----hcccccc--cCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCc
Q 028986           83 VKFEIWDTAGQERYA----ALAPLYY--RGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKRE  156 (200)
Q Consensus        83 ~~~~l~D~~g~~~~~----~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~  156 (200)
                      +.+.++||+|.....    .....++  ...+.+++|+|++..  ...+...+..+...   ++ -=+|+||.|....  
T Consensus       321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk--~~d~~~i~~~F~~~---~i-dglI~TKLDET~k--  392 (436)
T PRK11889        321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKDI---HI-DGIVFTKFDETAS--  392 (436)
T ss_pred             CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccC--hHHHHHHHHHhcCC---CC-CEEEEEcccCCCC--
Confidence            578999999953211    1112222  235678888998643  12222233333321   11 3467899996442  


Q ss_pred             CCHHHHHHHHHHcCCeEEEecC
Q 028986          157 VPAQDGIEYAEKNGMFFIETSA  178 (200)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~S~  178 (200)
                        .-.+...+...+.|+..++.
T Consensus       393 --~G~iLni~~~~~lPIsyit~  412 (436)
T PRK11889        393 --SGELLKIPAVSSAPIVLMTD  412 (436)
T ss_pred             --ccHHHHHHHHHCcCEEEEeC
Confidence              23455666677877666654

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=97.94  E-value=4.4e-05  Score=42.66  Aligned_cols=44  Identities=23%  Similarity=0.209  Sum_probs=30.2

Q ss_pred             CccEEEEEEeCCCH--HhHHHHHHHHHHHHHcCCCCCeEEEEEeCCC
Q 028986          106 GAAVAVVVYDITSP--DSFNKAQYWVKELQKHGSPDIVMALVGNKAD  150 (200)
Q Consensus       106 ~~d~~i~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D  150 (200)
                      -.++++|++|++..  -+.+....++..++.. ..+.|+++|+||+|
T Consensus        13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~-F~~~P~i~V~nK~D   58 (58)
T PF06858_consen   13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKPL-FPNKPVIVVLNKID   58 (58)
T ss_dssp             T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHH-TTTS-EEEEE--TT
T ss_pred             hcceEEEEEcCCCCCCCCHHHHHHHHHHHHHH-cCCCCEEEEEeccC
Confidence            36899999999964  4667777788888776 55899999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=97.94  E-value=0.00017  Score=55.56  Aligned_cols=96  Identities=19%  Similarity=0.026  Sum_probs=54.3

Q ss_pred             EEEEEEeCCChhh----hhhccc-ccc---cCccEEEEEEeCCCHHhHHH-H-HHHHHHHHHcCCCCCeEEEEEeCCCCC
Q 028986           83 VKFEIWDTAGQER----YAALAP-LYY---RGAAVAVVVYDITSPDSFNK-A-QYWVKELQKHGSPDIVMALVGNKADLH  152 (200)
Q Consensus        83 ~~~~l~D~~g~~~----~~~~~~-~~~---~~~d~~i~v~d~~~~~s~~~-~-~~~~~~i~~~~~~~~p~iiv~nK~D~~  152 (200)
                      ....++++.|...    ...... ..+   -..|+++-|+|+.+-..... . ..+..++...      =++|+||.|+.
T Consensus        85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~A------D~ivlNK~Dlv  158 (323)
T COG0523          85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFA------DVIVLNKTDLV  158 (323)
T ss_pred             CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhC------cEEEEecccCC
Confidence            4677888888322    122211 112   22588999999987533222 2 3333334332      36889999998


Q ss_pred             CCCcCCHHHHHHHHHHc--CCeEEEecCCCCCCHHHH
Q 028986          153 EKREVPAQDGIEYAEKN--GMFFIETSAKTADNINQL  187 (200)
Q Consensus       153 ~~~~~~~~~~~~~~~~~--~~~~~~~S~~~~~~i~~~  187 (200)
                      .+.+  .+..++..+.+  .++++.++.. .....++
T Consensus       159 ~~~~--l~~l~~~l~~lnp~A~i~~~~~~-~~~~~~l  192 (323)
T COG0523         159 DAEE--LEALEARLRKLNPRARIIETSYG-DVDLAEL  192 (323)
T ss_pred             CHHH--HHHHHHHHHHhCCCCeEEEcccc-CCCHHHh
Confidence            7654  44445555554  4568877773 3333333

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=97.90  E-value=0.00019  Score=50.36  Aligned_cols=83  Identities=13%  Similarity=0.058  Sum_probs=44.4

Q ss_pred             EEEEEEeCCChhh----hhhccccc--ccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCc
Q 028986           83 VKFEIWDTAGQER----YAALAPLY--YRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKRE  156 (200)
Q Consensus        83 ~~~~l~D~~g~~~----~~~~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~  156 (200)
                      ..+.++|++|...    .......+  ....|.+++|+|+......  + .+...+.+...   ..-+|.||.|......
T Consensus        83 ~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~--~-~~~~~~~~~~~---~~~viltk~D~~~~~g  156 (173)
T cd03115          83 FDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDA--V-NQAKAFNEALG---ITGVILTKLDGDARGG  156 (173)
T ss_pred             CCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHH--H-HHHHHHHhhCC---CCEEEEECCcCCCCcc
Confidence            4688899999632    11111111  1248999999998754321  1 22233322212   2567779999644322


Q ss_pred             CCHHHHHHHHHHcCCeEEE
Q 028986          157 VPAQDGIEYAEKNGMFFIE  175 (200)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~  175 (200)
                          .+...+...++|+..
T Consensus       157 ----~~~~~~~~~~~p~~~  171 (173)
T cd03115         157 ----AALSIRAVTGKPIKF  171 (173)
T ss_pred             ----hhhhhHHHHCcCeEe
Confidence                233355566666543

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=97.89  E-value=3.2e-05  Score=61.94  Aligned_cols=84  Identities=18%  Similarity=0.104  Sum_probs=46.5

Q ss_pred             EEEEEeCCChhhhhhc----ccc--cccCccEEEEEEeCCCHH-hHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCc
Q 028986           84 KFEIWDTAGQERYAAL----APL--YYRGAAVAVVVYDITSPD-SFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKRE  156 (200)
Q Consensus        84 ~~~l~D~~g~~~~~~~----~~~--~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~  156 (200)
                      .+.++||+|.......    ...  ..-.+|.+++|+|++... ..+.+    ..+....  + ..-+|+||.|....  
T Consensus       177 DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a----~~F~~~l--~-i~gvIlTKlD~~a~--  247 (437)
T PRK00771        177 DVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQA----KAFHEAV--G-IGGIIITKLDGTAK--  247 (437)
T ss_pred             CEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHH----HHHHhcC--C-CCEEEEecccCCCc--
Confidence            7899999995332111    111  123578999999988652 12222    2222111  1 13567899996332  


Q ss_pred             CCHHHHHHHHHHcCCeEEEecC
Q 028986          157 VPAQDGIEYAEKNGMFFIETSA  178 (200)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~S~  178 (200)
                        --.+...+...+.|+.+++.
T Consensus       248 --~G~~ls~~~~~~~Pi~fig~  267 (437)
T PRK00771        248 --GGGALSAVAETGAPIKFIGT  267 (437)
T ss_pred             --ccHHHHHHHHHCcCEEEEec
Confidence              22345556666777766654

>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]

Probab=97.89  E-value=6.4e-05  Score=55.29  Aligned_cols=70  Identities=21%  Similarity=0.210  Sum_probs=50.7

Q ss_pred             EEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHH-------hHHHHHHHHHHH----HHcCCCCCeEEEEEeCCCC
Q 028986           83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPD-------SFNKAQYWVKEL----QKHGSPDIVMALVGNKADL  151 (200)
Q Consensus        83 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-------s~~~~~~~~~~i----~~~~~~~~p~iiv~nK~D~  151 (200)
                      +.++.+|.+|+...+..|...+....++|+|+..+...       +-+.++.-+..+    .......+.+|+.+||.|+
T Consensus       202 v~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKqDl  281 (379)
T KOG0099|consen  202 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL  281 (379)
T ss_pred             cceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHHHH
Confidence            57999999999999999999999999999999887532       112232222222    2222446779999999998


Q ss_pred             C
Q 028986          152 H  152 (200)
Q Consensus       152 ~  152 (200)
                      .
T Consensus       282 l  282 (379)
T KOG0099|consen  282 L  282 (379)
T ss_pred             H
Confidence            4

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.89  E-value=9.6e-05  Score=58.84  Aligned_cols=85  Identities=13%  Similarity=0.160  Sum_probs=46.5

Q ss_pred             EEEEEEeCCChhh----hhhccccc--ccCccEEEEEEeCCC-HHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCC
Q 028986           83 VKFEIWDTAGQER----YAALAPLY--YRGAAVAVVVYDITS-PDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKR  155 (200)
Q Consensus        83 ~~~~l~D~~g~~~----~~~~~~~~--~~~~d~~i~v~d~~~-~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~  155 (200)
                      ..+.++||+|...    .......+  .....-.++|+|++. ...+..+..   .....   + .-=+|+||.|.... 
T Consensus       270 ~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~---~f~~~---~-~~~~I~TKlDEt~~-  341 (420)
T PRK14721        270 KHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVIS---AYQGH---G-IHGCIITKVDEAAS-  341 (420)
T ss_pred             CCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHH---HhcCC---C-CCEEEEEeeeCCCC-
Confidence            3688999999432    11111221  122456788889885 443443332   22211   1 13467799996432 


Q ss_pred             cCCHHHHHHHHHHcCCeEEEecC
Q 028986          156 EVPAQDGIEYAEKNGMFFIETSA  178 (200)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~S~  178 (200)
                         .-.+...+...+.++.+++.
T Consensus       342 ---~G~~l~~~~~~~lPi~yvt~  361 (420)
T PRK14721        342 ---LGIALDAVIRRKLVLHYVTN  361 (420)
T ss_pred             ---ccHHHHHHHHhCCCEEEEEC
Confidence               33456666677777766654

>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]

Probab=97.88  E-value=3.4e-05  Score=57.99  Aligned_cols=62  Identities=18%  Similarity=0.237  Sum_probs=40.0

Q ss_pred             CCceeeEEEEcCCCCcHHHHHHHHHcCCCC----CCCccccceeEEEEE-EEecCCcEEEEEEEeCCCh
Q 028986           30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFD----PTSKVTVGASFLSQT-IALQDSTTVKFEIWDTAGQ   93 (200)
Q Consensus        30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~D~~g~   93 (200)
                      ...++++.|+|-||+|||||+|++......    .......+.+..... +.+.+..  .+.++||||.
T Consensus       140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp--~vy~iDTPGi  206 (335)
T KOG2485|consen  140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRP--PVYLIDTPGI  206 (335)
T ss_pred             cCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCC--ceEEecCCCc
Confidence            356789999999999999999999764321    111122233333332 4454444  4899999994

>PRK10867 signal recognition particle protein; Provisional

Probab=97.86  E-value=2e-05  Score=62.91  Aligned_cols=85  Identities=14%  Similarity=0.090  Sum_probs=46.2

Q ss_pred             EEEEEEeCCChhh----hhhccccc--ccCccEEEEEEeCCCHH-hHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCC
Q 028986           83 VKFEIWDTAGQER----YAALAPLY--YRGAAVAVVVYDITSPD-SFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKR  155 (200)
Q Consensus        83 ~~~~l~D~~g~~~----~~~~~~~~--~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~  155 (200)
                      +.+.++||+|...    .......+  .-..+.+++|+|+.... ..+.+..+    .+..  ++ .-+|+||.|....-
T Consensus       184 ~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq~av~~a~~F----~~~~--~i-~giIlTKlD~~~rg  256 (433)
T PRK10867        184 YDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQDAVNTAKAF----NEAL--GL-TGVILTKLDGDARG  256 (433)
T ss_pred             CCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHHHHHHHHHHH----HhhC--CC-CEEEEeCccCcccc
Confidence            5789999999421    11111111  12467789999987642 22333332    2211  11 35677999963322


Q ss_pred             cCCHHHHHHHHHHcCCeEEEecC
Q 028986          156 EVPAQDGIEYAEKNGMFFIETSA  178 (200)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~S~  178 (200)
                          -.+.......++|+.++..
T Consensus       257 ----G~alsi~~~~~~PI~fig~  275 (433)
T PRK10867        257 ----GAALSIRAVTGKPIKFIGT  275 (433)
T ss_pred             ----cHHHHHHHHHCcCEEEEeC
Confidence                1255566667788766654

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.83  E-value=0.00024  Score=47.76  Aligned_cols=24  Identities=25%  Similarity=0.441  Sum_probs=21.3

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcCC
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRGQ   57 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~~   57 (200)
                      -.++|.|++|+|||+|++.+...-
T Consensus        20 ~~v~i~G~~G~GKT~l~~~i~~~~   43 (151)
T cd00009          20 KNLLLYGPPGTGKTTLARAIANEL   43 (151)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHh
Confidence            368999999999999999998854

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []

Probab=97.82  E-value=0.0018  Score=44.89  Aligned_cols=145  Identities=8%  Similarity=0.029  Sum_probs=101.5

Q ss_pred             CCCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCc
Q 028986           28 DAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGA  107 (200)
Q Consensus        28 ~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~  107 (200)
                      -+..+...|+++|..+.++..|..++...+..           ....+..-.         ..|-..+.    ...-...
T Consensus        10 lp~ln~atiLLVg~e~~~~~~LA~a~l~~~~~-----------~~l~Vh~a~---------sLPLp~e~----~~lRprI   65 (176)
T PF11111_consen   10 LPELNTATILLVGTEEALLQQLAEAMLEEDKE-----------FKLKVHLAK---------SLPLPSEN----NNLRPRI   65 (176)
T ss_pred             CCCcceeEEEEecccHHHHHHHHHHHHhhccc-----------eeEEEEEec---------cCCCcccc----cCCCcee
Confidence            34556778999999999999999999973211           011111111         01111111    1123347


Q ss_pred             cEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHH
Q 028986          108 AVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQL  187 (200)
Q Consensus       108 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~  187 (200)
                      |.++|++|.....++..++.-+..+-.....++ +.++++-....+...+...++.+++..++++++.+.-....+...+
T Consensus        66 DlIVFvinl~sk~SL~~ve~SL~~vd~~fflGK-VCfl~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~~l  144 (176)
T PF11111_consen   66 DLIVFVINLHSKYSLQSVEASLSHVDPSFFLGK-VCFLATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGRTSL  144 (176)
T ss_pred             EEEEEEEecCCcccHHHHHHHHhhCChhhhccc-eEEEEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccchHHHHH
Confidence            999999999999999888776665533222222 5677777777776778899999999999999999999999998888


Q ss_pred             HHHHHHhhcc
Q 028986          188 FEVLITCTSS  197 (200)
Q Consensus       188 ~~~i~~~~~~  197 (200)
                      -+.|++.++-
T Consensus       145 AqRLL~~lqi  154 (176)
T PF11111_consen  145 AQRLLRMLQI  154 (176)
T ss_pred             HHHHHHHHHH
Confidence            8888887753

CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].

>KOG1534 consensus Putative transcription factor FET5 [Transcription]

Probab=97.81  E-value=2.6e-05  Score=55.53  Aligned_cols=23  Identities=26%  Similarity=0.436  Sum_probs=20.1

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHc
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~   55 (200)
                      .+.++|+||.||||||+++.+..
T Consensus         3 ~ya~lV~GpAgSGKSTyC~~~~~   25 (273)
T KOG1534|consen    3 RYAQLVMGPAGSGKSTYCSSMYE   25 (273)
T ss_pred             ceeEEEEccCCCCcchHHHHHHH
Confidence            45688999999999999999865

>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]

Probab=97.80  E-value=3.3e-05  Score=62.85  Aligned_cols=133  Identities=15%  Similarity=0.072  Sum_probs=82.1

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCC-----CCCCc-----------cccceeEEEEEEEecCCcEEEEEEEeCCChh
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQF-----DPTSK-----------VTVGASFLSQTIALQDSTTVKFEIWDTAGQE   94 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~-----~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~   94 (200)
                      .+.-+|.+..+-.+||||+-.+.+....     .....           ...+.+...--....+. .+++.++||||+-
T Consensus        37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~-~~~iNiIDTPGHv  115 (721)
T KOG0465|consen   37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWR-DYRINIIDTPGHV  115 (721)
T ss_pred             hhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeec-cceeEEecCCCce
Confidence            3455899999999999999887754211     00000           00011111111111122 3789999999999


Q ss_pred             hhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcC
Q 028986           95 RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNG  170 (200)
Q Consensus        95 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~  170 (200)
                      ++....+..++--|+.++++|+...-.-+...-|    ++.+..++|.+..+||.|......  ...+..+..+++
T Consensus       116 DFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~----rQ~~ry~vP~i~FiNKmDRmGa~~--~~~l~~i~~kl~  185 (721)
T KOG0465|consen  116 DFTFEVERALRVLDGAVLVLDAVAGVESQTETVW----RQMKRYNVPRICFINKMDRMGASP--FRTLNQIRTKLN  185 (721)
T ss_pred             eEEEEehhhhhhccCeEEEEEcccceehhhHHHH----HHHHhcCCCeEEEEehhhhcCCCh--HHHHHHHHhhcC
Confidence            9998899999999999999998876322332323    222244788999999999866543  233344444433

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=97.79  E-value=0.00043  Score=48.86  Aligned_cols=23  Identities=22%  Similarity=0.338  Sum_probs=20.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQ   57 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~   57 (200)
                      .++++|+.|+|||||++.+.+..
T Consensus        27 ~~~l~G~nGsGKSTLl~~l~Gl~   49 (177)
T cd03222          27 VIGIVGPNGTGKTTAVKILAGQL   49 (177)
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            68899999999999999999853

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>TIGR00959 ffh signal recognition particle protein

Probab=97.78  E-value=3.3e-05  Score=61.71  Aligned_cols=86  Identities=15%  Similarity=0.070  Sum_probs=47.2

Q ss_pred             EEEEEEeCCChhhh----hhccccc--ccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCc
Q 028986           83 VKFEIWDTAGQERY----AALAPLY--YRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKRE  156 (200)
Q Consensus        83 ~~~~l~D~~g~~~~----~~~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~  156 (200)
                      +.+.++||+|....    ......+  .-..|.+++|+|+....   ....+...+....  + ..-+|.||.|..... 
T Consensus       183 ~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq---~~~~~a~~f~~~v--~-i~giIlTKlD~~~~~-  255 (428)
T TIGR00959       183 FDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ---DAVNTAKTFNERL--G-LTGVVLTKLDGDARG-  255 (428)
T ss_pred             CCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH---HHHHHHHHHHhhC--C-CCEEEEeCccCcccc-
Confidence            46899999994211    1111111  22468889999987542   2222222222211  1 135668999953322 


Q ss_pred             CCHHHHHHHHHHcCCeEEEecC
Q 028986          157 VPAQDGIEYAEKNGMFFIETSA  178 (200)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~S~  178 (200)
                         -.+...+...++|+.++..
T Consensus       256 ---G~~lsi~~~~~~PI~fi~~  274 (428)
T TIGR00959       256 ---GAALSVRSVTGKPIKFIGV  274 (428)
T ss_pred             ---cHHHHHHHHHCcCEEEEeC
Confidence               2356666677888776655

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>cd03114 ArgK-like The function of this protein family is unkown

Probab=97.77  E-value=0.00037  Score=47.73  Aligned_cols=57  Identities=23%  Similarity=0.120  Sum_probs=34.9

Q ss_pred             EEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCC
Q 028986           83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKAD  150 (200)
Q Consensus        83 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D  150 (200)
                      +.+.++||+|....   ...++..+|-++++....-.+...-++.  ..+. .     .=++++||.|
T Consensus        92 ~D~iiIDtaG~~~~---~~~~~~~Ad~~ivv~tpe~~D~y~~~k~--~~~~-~-----~~~~~~~k~~  148 (148)
T cd03114          92 FDVIIVETVGVGQS---EVDIASMADTTVVVMAPGAGDDIQAIKA--GIME-I-----ADIVVVNKAD  148 (148)
T ss_pred             CCEEEEECCccChh---hhhHHHhCCEEEEEECCCchhHHHHhhh--hHhh-h-----cCEEEEeCCC
Confidence            57899999886422   2347788999999888773332222211  1222 1     1367889987

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=97.76  E-value=0.00033  Score=55.00  Aligned_cols=85  Identities=14%  Similarity=0.103  Sum_probs=45.9

Q ss_pred             EEEEEEeCCChhhhh----hcccccccC--ccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCc
Q 028986           83 VKFEIWDTAGQERYA----ALAPLYYRG--AAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKRE  156 (200)
Q Consensus        83 ~~~~l~D~~g~~~~~----~~~~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~  156 (200)
                      +.+.++||.|...+.    .....++..  ..-+.+|++++..  .+.+...+..+....   +. =+++||.|-..   
T Consensus       282 ~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~~~~---i~-~~I~TKlDET~---  352 (407)
T COG1419         282 CDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFSLFP---ID-GLIFTKLDETT---  352 (407)
T ss_pred             CCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhccCC---cc-eeEEEcccccC---
Confidence            479999999954332    222222222  2345667777655  445555555554432   21 25679999533   


Q ss_pred             CCHHHHHHHHHHcCCeEEEec
Q 028986          157 VPAQDGIEYAEKNGMFFIETS  177 (200)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~S  177 (200)
                       +.-.....+.+.+.|+-+++
T Consensus       353 -s~G~~~s~~~e~~~PV~YvT  372 (407)
T COG1419         353 -SLGNLFSLMYETRLPVSYVT  372 (407)
T ss_pred             -chhHHHHHHHHhCCCeEEEe
Confidence             23344555555566654444

>PRK11537 putative GTP-binding protein YjiA; Provisional

Probab=97.75  E-value=0.001  Score=51.36  Aligned_cols=85  Identities=8%  Similarity=-0.004  Sum_probs=45.3

Q ss_pred             EEEEEEeCCChhhhhhccccc-----cc---CccEEEEEEeCCCHHhH-HHHHHHHHHHHHcCCCCCeEEEEEeCCCCCC
Q 028986           83 VKFEIWDTAGQERYAALAPLY-----YR---GAAVAVVVYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLHE  153 (200)
Q Consensus        83 ~~~~l~D~~g~~~~~~~~~~~-----~~---~~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~  153 (200)
                      ....++++.|..+-......+     +.   ..+.++.|+|+.+.... +.......++...      =++|+||.|+..
T Consensus        91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~A------D~IvlnK~Dl~~  164 (318)
T PRK11537         91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYA------DRILLTKTDVAG  164 (318)
T ss_pred             CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHhC------CEEEEeccccCC
Confidence            456789999854322222221     11   25889999999764222 1111122233322      368899999876


Q ss_pred             CCcCCHHHHHHHHHHc--CCeEEEec
Q 028986          154 KREVPAQDGIEYAEKN--GMFFIETS  177 (200)
Q Consensus       154 ~~~~~~~~~~~~~~~~--~~~~~~~S  177 (200)
                      ..    +.+.+..+.+  .++++.++
T Consensus       165 ~~----~~~~~~l~~lnp~a~i~~~~  186 (318)
T PRK11537        165 EA----EKLRERLARINARAPVYTVV  186 (318)
T ss_pred             HH----HHHHHHHHHhCCCCEEEEec
Confidence            32    3444444444  34566554

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.74  E-value=0.00021  Score=56.02  Aligned_cols=86  Identities=10%  Similarity=0.098  Sum_probs=46.0

Q ss_pred             EEEEEEeCCChhhh----hhccccccc--CccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCc
Q 028986           83 VKFEIWDTAGQERY----AALAPLYYR--GAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKRE  156 (200)
Q Consensus        83 ~~~~l~D~~g~~~~----~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~  156 (200)
                      +.+.++||+|....    ......+..  ..+.+++|+++...  ...+...+....   ..+ +--+|+||.|....  
T Consensus       286 ~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~--~~d~~~i~~~f~---~l~-i~glI~TKLDET~~--  357 (407)
T PRK12726        286 VDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMK--SADVMTILPKLA---EIP-IDGFIITKMDETTR--  357 (407)
T ss_pred             CCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCccc--HHHHHHHHHhcC---cCC-CCEEEEEcccCCCC--
Confidence            57899999996321    111122222  34666777776432  223333322222   111 23567899996432  


Q ss_pred             CCHHHHHHHHHHcCCeEEEecC
Q 028986          157 VPAQDGIEYAEKNGMFFIETSA  178 (200)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~S~  178 (200)
                        .-.+...+...+.|+..++.
T Consensus       358 --~G~~Lsv~~~tglPIsylt~  377 (407)
T PRK12726        358 --IGDLYTVMQETNLPVLYMTD  377 (407)
T ss_pred             --ccHHHHHHHHHCCCEEEEec
Confidence              33456666777888766664

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.70  E-value=3.4e-05  Score=50.73  Aligned_cols=22  Identities=23%  Similarity=0.471  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .|+|.|++||||||+++.|...
T Consensus         1 vI~I~G~~gsGKST~a~~La~~   22 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAER   22 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999999884

...

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.70  E-value=0.0016  Score=52.95  Aligned_cols=86  Identities=14%  Similarity=0.103  Sum_probs=45.9

Q ss_pred             EEEEEEeCCChhhhh-------hcccccccCccEEEEEEeCCCH-HhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCC
Q 028986           83 VKFEIWDTAGQERYA-------ALAPLYYRGAAVAVVVYDITSP-DSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK  154 (200)
Q Consensus        83 ~~~~l~D~~g~~~~~-------~~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~  154 (200)
                      ..+.++||+|.....       ........ ..-.++|+|+... ..+..+...+..      .. ..-+|+||.|... 
T Consensus       335 ~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~-p~e~~LVLdAt~~~~~l~~i~~~f~~------~~-~~g~IlTKlDet~-  405 (484)
T PRK06995        335 KHIVLIDTIGMSQRDRMVSEQIAMLHGAGA-PVKRLLLLNATSHGDTLNEVVQAYRG------PG-LAGCILTKLDEAA-  405 (484)
T ss_pred             CCeEEeCCCCcChhhHHHHHHHHHHhccCC-CCeeEEEEeCCCcHHHHHHHHHHhcc------CC-CCEEEEeCCCCcc-
Confidence            368899999932211       11111111 2236788898754 333333222221      12 2346789999543 


Q ss_pred             CcCCHHHHHHHHHHcCCeEEEecCCC
Q 028986          155 REVPAQDGIEYAEKNGMFFIETSAKT  180 (200)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~S~~~  180 (200)
                         ..-.+...+...++++.+++.-.
T Consensus       406 ---~~G~~l~i~~~~~lPI~yvt~GQ  428 (484)
T PRK06995        406 ---SLGGALDVVIRYKLPLHYVSNGQ  428 (484)
T ss_pred             ---cchHHHHHHHHHCCCeEEEecCC
Confidence               23355666777788877766433

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.69  E-value=0.0012  Score=56.31  Aligned_cols=90  Identities=12%  Similarity=0.113  Sum_probs=48.3

Q ss_pred             EEEEEEeCCChhh----hhhccccc--ccCccEEEEEEeCCCH-HhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCC
Q 028986           83 VKFEIWDTAGQER----YAALAPLY--YRGAAVAVVVYDITSP-DSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKR  155 (200)
Q Consensus        83 ~~~~l~D~~g~~~----~~~~~~~~--~~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~  155 (200)
                      ..+.|+||+|...    ........  ....+-.++|+|++.. +.+..+...   +......+ +-=+|+||.|.... 
T Consensus       264 ~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~---f~~~~~~~-i~glIlTKLDEt~~-  338 (767)
T PRK14723        264 KHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHA---YRHGAGED-VDGCIITKLDEATH-  338 (767)
T ss_pred             CCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHH---HhhcccCC-CCEEEEeccCCCCC-
Confidence            4789999999321    11111111  2235567899998853 444433322   22211111 23467899996432 


Q ss_pred             cCCHHHHHHHHHHcCCeEEEecCCC
Q 028986          156 EVPAQDGIEYAEKNGMFFIETSAKT  180 (200)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~S~~~  180 (200)
                         .=.+..+....++|+.+++.-.
T Consensus       339 ---~G~iL~i~~~~~lPI~yit~GQ  360 (767)
T PRK14723        339 ---LGPALDTVIRHRLPVHYVSTGQ  360 (767)
T ss_pred             ---ccHHHHHHHHHCCCeEEEecCC
Confidence               2345566666788777766433

>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]

Probab=97.68  E-value=0.0001  Score=57.43  Aligned_cols=160  Identities=18%  Similarity=0.132  Sum_probs=89.9

Q ss_pred             CCCCCceeeEEEEcCCCCcHHHHHHHHHcCC-------------------CCCCCc----ccc------ceeEEEEEEEe
Q 028986           27 SDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQ-------------------FDPTSK----VTV------GASFLSQTIAL   77 (200)
Q Consensus        27 ~~~~~~~~~i~i~G~~~sGKSsli~~l~~~~-------------------~~~~~~----~~~------~~~~~~~~~~~   77 (200)
                      ...++..++++++|+-.+||||+-..+....                   ....|.    .+.      +-+...... +
T Consensus        73 ~~~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA-~  151 (501)
T KOG0459|consen   73 GEYPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRA-Y  151 (501)
T ss_pred             cCCCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeE-E
Confidence            3445778899999999999999865553210                   000000    000      000111111 1


Q ss_pred             cCCcEEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHH---hHHHH--HHHHHHHHHcCCCCCeEEEEEeCCCCC
Q 028986           78 QDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPD---SFNKA--QYWVKELQKHGSPDIVMALVGNKADLH  152 (200)
Q Consensus        78 ~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~--~~~~~~i~~~~~~~~p~iiv~nK~D~~  152 (200)
                      .....-++++.|+||+..|......-..++|..++|+.+...+   .|+.-  ...-..+.. ...-...|+++||.|-.
T Consensus       152 FEte~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lak-t~gv~~lVv~vNKMddP  230 (501)
T KOG0459|consen  152 FETENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAK-TAGVKHLIVLINKMDDP  230 (501)
T ss_pred             EEecceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHH-hhccceEEEEEEeccCC
Confidence            1122258999999999888877777777899999999885432   12211  111111111 12234478889999964


Q ss_pred             CC--CcCCHHHHH----HHHHHc------CCeEEEecCCCCCCHHHHH
Q 028986          153 EK--REVPAQDGI----EYAEKN------GMFFIETSAKTADNINQLF  188 (200)
Q Consensus       153 ~~--~~~~~~~~~----~~~~~~------~~~~~~~S~~~~~~i~~~~  188 (200)
                      ..  ..-..++..    .+....      ...++++|..+|.++.+..
T Consensus       231 tvnWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~  278 (501)
T KOG0459|consen  231 TVNWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRT  278 (501)
T ss_pred             ccCcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhcc
Confidence            32  112222222    233322      3469999999999988754

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=97.68  E-value=0.00036  Score=43.59  Aligned_cols=69  Identities=19%  Similarity=0.295  Sum_probs=44.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhc-ccccccCccEEEEEE
Q 028986           36 LVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAAL-APLYYRGAAVAVVVY  114 (200)
Q Consensus        36 i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~-~~~~~~~~d~~i~v~  114 (200)
                      +++.|..|+|||++...+...--..      +..    ...+.     .+.++|+++....... .......+|.+++++
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~~~------g~~----v~~~~-----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~   66 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALAKR------GKR----VLLID-----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVT   66 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHC------CCe----EEEEC-----CEEEEeCCCCccchhhhhhhhhhhCCEEEEec
Confidence            6788999999999998887642111      100    01111     5888999986432221 134556789999999


Q ss_pred             eCCCH
Q 028986          115 DITSP  119 (200)
Q Consensus       115 d~~~~  119 (200)
                      +....
T Consensus        67 ~~~~~   71 (99)
T cd01983          67 TPEAL   71 (99)
T ss_pred             CCchh
Confidence            88754

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.68  E-value=0.00019  Score=57.59  Aligned_cols=87  Identities=13%  Similarity=0.103  Sum_probs=48.1

Q ss_pred             EEEEEEeCCChhhhh----hccccccc---CccEEEEEEeCCCH-HhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCC
Q 028986           83 VKFEIWDTAGQERYA----ALAPLYYR---GAAVAVVVYDITSP-DSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK  154 (200)
Q Consensus        83 ~~~~l~D~~g~~~~~----~~~~~~~~---~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~  154 (200)
                      +.+.++||+|.....    .....++.   ...-+++|++++.. ..+..+   +..+...   ++ --+|+||.|....
T Consensus       300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~---~~~f~~~---~~-~~vI~TKlDet~~  372 (424)
T PRK05703        300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDI---YKHFSRL---PL-DGLIFTKLDETSS  372 (424)
T ss_pred             CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHH---HHHhCCC---CC-CEEEEeccccccc
Confidence            578999999952211    11122222   23466778888644 333333   2222211   21 2477899996332


Q ss_pred             CcCCHHHHHHHHHHcCCeEEEecCCC
Q 028986          155 REVPAQDGIEYAEKNGMFFIETSAKT  180 (200)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~S~~~  180 (200)
                          .-.+..++...+.++.+++.-.
T Consensus       373 ----~G~i~~~~~~~~lPv~yit~Gq  394 (424)
T PRK05703        373 ----LGSILSLLIESGLPISYLTNGQ  394 (424)
T ss_pred             ----ccHHHHHHHHHCCCEEEEeCCC
Confidence                2356677777888877766533

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=97.68  E-value=0.00068  Score=49.29  Aligned_cols=47  Identities=23%  Similarity=0.157  Sum_probs=32.0

Q ss_pred             ccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCC
Q 028986          102 LYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADL  151 (200)
Q Consensus       102 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~  151 (200)
                      ...+.+|.+|.|+|++.. ++...++..+...+..  -.++.+|+||.|-
T Consensus       151 g~~~~vD~vivVvDpS~~-sl~taeri~~L~~elg--~k~i~~V~NKv~e  197 (255)
T COG3640         151 GTIEGVDLVIVVVDPSYK-SLRTAERIKELAEELG--IKRIFVVLNKVDE  197 (255)
T ss_pred             ccccCCCEEEEEeCCcHH-HHHHHHHHHHHHHHhC--CceEEEEEeeccc
Confidence            345779999999999854 3444444444444332  2669999999994

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=97.68  E-value=0.0008  Score=43.28  Aligned_cols=103  Identities=17%  Similarity=0.179  Sum_probs=59.6

Q ss_pred             EEEE-cCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEEE
Q 028986           36 LVLL-GDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVY  114 (200)
Q Consensus        36 i~i~-G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~  114 (200)
                      |+++ +..|+||||+...|........     +.............  ..+.++|+|+....  .....+..+|.++++.
T Consensus         2 i~~~~~kgg~gkt~~~~~la~~~~~~~-----~~~~~l~d~d~~~~--~D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv   72 (106)
T cd03111           2 IAFIGAKGGVGATTLAANLAVALAKEA-----GRRVLLVDLDLQFG--DDYVVVDLGRSLDE--VSLAALDQADRVFLVT   72 (106)
T ss_pred             EEEECCCCCCcHHHHHHHHHHHHHhcC-----CCcEEEEECCCCCC--CCEEEEeCCCCcCH--HHHHHHHHcCeEEEEe
Confidence            3444 5677999998877755321110     11111111111111  16899999986432  2234667799999999


Q ss_pred             eCCCHHhHHHHHHHHHHHHHcCCC-CCeEEEEEeC
Q 028986          115 DITSPDSFNKAQYWVKELQKHGSP-DIVMALVGNK  148 (200)
Q Consensus       115 d~~~~~s~~~~~~~~~~i~~~~~~-~~p~iiv~nK  148 (200)
                      +.+.. +...+..+++.+.+.... ...+.+|+|+
T Consensus        73 ~~~~~-s~~~~~~~~~~l~~~~~~~~~~~~lVvNr  106 (106)
T cd03111          73 QQDLP-SIRNAKRLLELLRVLDYSLPAKIELVLNR  106 (106)
T ss_pred             cCChH-HHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence            87644 466667777777665443 4457777775

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=97.67  E-value=0.0003  Score=44.98  Aligned_cols=82  Identities=15%  Similarity=0.186  Sum_probs=48.6

Q ss_pred             EEEEc-CCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEEE
Q 028986           36 LVLLG-DSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVY  114 (200)
Q Consensus        36 i~i~G-~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~  114 (200)
                      |+|.| ..|+||||+...|....-. .     +......  .. + ..+.+.++|+|+.....  ....+..+|.++++.
T Consensus         2 i~~~~~kgG~Gkst~~~~la~~~~~-~-----~~~vl~~--d~-d-~~~d~viiD~p~~~~~~--~~~~l~~ad~viv~~   69 (104)
T cd02042           2 IAVANQKGGVGKTTTAVNLAAALAR-R-----GKRVLLI--DL-D-PQYDYIIIDTPPSLGLL--TRNALAAADLVLIPV   69 (104)
T ss_pred             EEEEeCCCCcCHHHHHHHHHHHHHh-C-----CCcEEEE--eC-C-CCCCEEEEeCcCCCCHH--HHHHHHHCCEEEEec
Confidence            56777 5689999998877653211 0     1111111  11 1 11578999999864322  225667799999999


Q ss_pred             eCCCHHhHHHHHHHHH
Q 028986          115 DITSPDSFNKAQYWVK  130 (200)
Q Consensus       115 d~~~~~s~~~~~~~~~  130 (200)
                      +.+. .++..+..+++
T Consensus        70 ~~~~-~s~~~~~~~~~   84 (104)
T cd02042          70 QPSP-LDLDGLEKLLE   84 (104)
T ss_pred             cCCH-HHHHHHHHHHH
Confidence            8764 34555555554

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>PRK08118 topology modulation protein; Reviewed

Probab=97.67  E-value=4.1e-05  Score=53.53  Aligned_cols=22  Identities=32%  Similarity=0.617  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      +|+|+|++|||||||.+.|...
T Consensus         3 rI~I~G~~GsGKSTlak~L~~~   24 (167)
T PRK08118          3 KIILIGSGGSGKSTLARQLGEK   24 (167)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            7999999999999999999874

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.64  E-value=6.3e-05  Score=43.10  Aligned_cols=23  Identities=22%  Similarity=0.271  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQ   57 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~   57 (200)
                      ..+|.|+.|+|||||+.++.---
T Consensus        25 ~tli~G~nGsGKSTllDAi~~~L   47 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQTVL   47 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            38899999999999999887643

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=97.64  E-value=4.7e-05  Score=53.72  Aligned_cols=23  Identities=26%  Similarity=0.687  Sum_probs=21.3

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcC
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .+|+|+|+|||||||+...|...
T Consensus         1 ~riiilG~pGaGK~T~A~~La~~   23 (178)
T COG0563           1 MRILILGPPGAGKSTLAKKLAKK   23 (178)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999999886

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.61  E-value=0.0015  Score=51.93  Aligned_cols=135  Identities=18%  Similarity=0.183  Sum_probs=68.4

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHcCC-C-----------CCCCc----------cccceeEEEEE-E-Ee---cCCcEEEE
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVRGQ-F-----------DPTSK----------VTVGASFLSQT-I-AL---QDSTTVKF   85 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~~~-~-----------~~~~~----------~~~~~~~~~~~-~-~~---~~~~~~~~   85 (200)
                      ...++++|++||||||++..|.... .           +....          ...+....... . ..   -....+.+
T Consensus       223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~  302 (432)
T PRK12724        223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL  302 (432)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence            3468899999999999999887421 0           00000          00011110000 0 00   00123578


Q ss_pred             EEEeCCChhhh----hhccccccc-----CccEEEEEEeCCCH-HhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCC
Q 028986           86 EIWDTAGQERY----AALAPLYYR-----GAAVAVVVYDITSP-DSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKR  155 (200)
Q Consensus        86 ~l~D~~g~~~~----~~~~~~~~~-----~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~  155 (200)
                      .++||+|....    ...+..+++     ...-.++|+|++.. +....+...+   ...   ++ -=+|+||.|-... 
T Consensus       303 VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f---~~~---~~-~glIlTKLDEt~~-  374 (432)
T PRK12724        303 ILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAY---ESL---NY-RRILLTKLDEADF-  374 (432)
T ss_pred             EEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHh---cCC---CC-CEEEEEcccCCCC-
Confidence            99999995311    111222221     23467889998865 2333333222   211   11 3467899996432 


Q ss_pred             cCCHHHHHHHHHHcCCeEEEecC
Q 028986          156 EVPAQDGIEYAEKNGMFFIETSA  178 (200)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~S~  178 (200)
                         .-.+...+...+.|+..++.
T Consensus       375 ---~G~il~i~~~~~lPI~ylt~  394 (432)
T PRK12724        375 ---LGSFLELADTYSKSFTYLSV  394 (432)
T ss_pred             ---ccHHHHHHHHHCCCEEEEec
Confidence               22355666667777666654

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=97.60  E-value=0.00035  Score=47.27  Aligned_cols=105  Identities=21%  Similarity=0.200  Sum_probs=59.5

Q ss_pred             EEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEEEeCC
Q 028986           38 LLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDIT  117 (200)
Q Consensus        38 i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~  117 (200)
                      .-|..|+|||++.-.+...--.. .....-.+.   .... ....+.+.++|+|+..  .......+..+|.++++.+.+
T Consensus         5 ~~~kgg~gkt~~~~~~a~~~~~~-~~~~~~vd~---D~~~-~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~   77 (139)
T cd02038           5 TSGKGGVGKTNISANLALALAKL-GKRVLLLDA---DLGL-ANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE   77 (139)
T ss_pred             EcCCCCCcHHHHHHHHHHHHHHC-CCcEEEEEC---CCCC-CCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC
Confidence            44789999999876665421100 000000000   0000 0011578999999743  222345688899999999987


Q ss_pred             CHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCC
Q 028986          118 SPDSFNKAQYWVKELQKHGSPDIVMALVGNKADL  151 (200)
Q Consensus       118 ~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~  151 (200)
                      .. ++......++.+.+. ....++.+|+|+.+.
T Consensus        78 ~~-s~~~~~~~l~~l~~~-~~~~~~~lVvN~~~~  109 (139)
T cd02038          78 PT-SITDAYALIKKLAKQ-LRVLNFRVVVNRAES  109 (139)
T ss_pred             hh-HHHHHHHHHHHHHHh-cCCCCEEEEEeCCCC
Confidence            43 344444455555443 234567899999974

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>PRK07261 topology modulation protein; Provisional

Probab=97.60  E-value=5.9e-05  Score=52.97  Aligned_cols=22  Identities=32%  Similarity=0.596  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      +|+|+|++|||||||++.|...
T Consensus         2 ri~i~G~~GsGKSTla~~l~~~   23 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQH   23 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            7999999999999999998764

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.57  E-value=0.0016  Score=49.07  Aligned_cols=135  Identities=13%  Similarity=0.161  Sum_probs=69.6

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcCCC-----------CCC----------CccccceeEEEEE----EE-----ecCCcEE
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRGQF-----------DPT----------SKVTVGASFLSQT----IA-----LQDSTTV   83 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~~~-----------~~~----------~~~~~~~~~~~~~----~~-----~~~~~~~   83 (200)
                      -+++++|++|+||||++..+.....           +..          +....+.......    +.     ......+
T Consensus        76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~  155 (270)
T PRK06731         76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARV  155 (270)
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCCC
Confidence            5899999999999999988754310           000          0000011110000    00     0011135


Q ss_pred             EEEEEeCCChhhh----hhcccccc--cCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcC
Q 028986           84 KFEIWDTAGQERY----AALAPLYY--RGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREV  157 (200)
Q Consensus        84 ~~~l~D~~g~~~~----~~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~  157 (200)
                      .+.++||+|....    ...+..++  .+.+-+++|+|++..  .+.+..++..+...    .+--+|+||.|....   
T Consensus       156 D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~--~~d~~~~~~~f~~~----~~~~~I~TKlDet~~---  226 (270)
T PRK06731        156 DYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKDI----HIDGIVFTKFDETAS---  226 (270)
T ss_pred             CEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccC--HHHHHHHHHHhCCC----CCCEEEEEeecCCCC---
Confidence            7899999995321    11111222  235678999998743  12222222222221    123467899996442   


Q ss_pred             CHHHHHHHHHHcCCeEEEecC
Q 028986          158 PAQDGIEYAEKNGMFFIETSA  178 (200)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~S~  178 (200)
                       .-.+...+...+.|+..++.
T Consensus       227 -~G~~l~~~~~~~~Pi~~it~  246 (270)
T PRK06731        227 -SGELLKIPAVSSAPIVLMTD  246 (270)
T ss_pred             -ccHHHHHHHHHCcCEEEEeC
Confidence             23455666667777666654

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=97.55  E-value=0.00067  Score=53.88  Aligned_cols=25  Identities=24%  Similarity=0.519  Sum_probs=21.9

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHcCC
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVRGQ   57 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~~~   57 (200)
                      .-+|+|+||.|+|||||+..|++..
T Consensus       613 dSRiaIVGPNGVGKSTlLkLL~Gkl  637 (807)
T KOG0066|consen  613 DSRIAIVGPNGVGKSTLLKLLIGKL  637 (807)
T ss_pred             cceeEEECCCCccHHHHHHHHhcCC
Confidence            3489999999999999999998854

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=97.52  E-value=7.9e-05  Score=50.47  Aligned_cols=21  Identities=33%  Similarity=0.653  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 028986           36 LVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        36 i~i~G~~~sGKSsli~~l~~~   56 (200)
                      |+++|++|||||||++.|...
T Consensus         2 ii~~G~pgsGKSt~a~~l~~~   22 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAKR   22 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999999853

...

>KOG3929 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.52  E-value=0.00021  Score=52.51  Aligned_cols=146  Identities=16%  Similarity=0.240  Sum_probs=84.4

Q ss_pred             CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhccccccc---
Q 028986           29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYR---  105 (200)
Q Consensus        29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~---  105 (200)
                      ....+..|++.|..+.  |++|++.+...- +...++....|++....-.+..+--..+|+.+|......+..--+.   
T Consensus        41 ~~~~E~~I~~~Gn~~~--tt~I~~~FdR~e-~~~~ptlaLEYtygRR~~g~~~kdiaN~WELGgg~~~~~LLsVPit~~~  117 (363)
T KOG3929|consen   41 AEKFEFFIGSKGNGGK--TTIILRCFDRDE-PPKPPTLALEYTYGRRAKGHNPKDIANFWELGGGTSLLDLLSVPITGDT  117 (363)
T ss_pred             hccceeEEEEecCCce--eEeehhhcCccc-CCCCCceeeeeehhhhccCCCchhHHHHHHhcCCccHHHHhcCcccccc
Confidence            3456778999998765  899988887543 2344555666655443332322234578999886554444333222   


Q ss_pred             -CccEEEEEEeCCCHHhH-HHHHHHHHHHHH-------------------------------------cCCCCCeEEEEE
Q 028986          106 -GAAVAVVVYDITSPDSF-NKAQYWVKELQK-------------------------------------HGSPDIVMALVG  146 (200)
Q Consensus       106 -~~d~~i~v~d~~~~~s~-~~~~~~~~~i~~-------------------------------------~~~~~~p~iiv~  146 (200)
                       +.-.+|+++|+++++.+ ..++..+..++.                                     .....+|++||+
T Consensus       118 l~~~slIL~LDls~p~~~W~t~E~~~~~~R~~vd~~~~~~~k~~~~L~E~mrqR~~~rvgqd~~d~e~~dP~P~PV~IVg  197 (363)
T KOG3929|consen  118 LRTFSLILVLDLSKPNDLWPTMENLLQATRSHVDKVIMKLGKTNAKLVEEMRQRIWNRVGQDHPDHELIDPFPVPVVIVG  197 (363)
T ss_pred             hhhhhheeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhcccCCCchhhcCCCCCceEEec
Confidence             13467899999987543 433333332221                                     013368999999


Q ss_pred             eCCCCCCCCcCCHHHHHHHHH-------HcCCeEEEecCC
Q 028986          147 NKADLHEKREVPAQDGIEYAE-------KNGMFFIETSAK  179 (200)
Q Consensus       147 nK~D~~~~~~~~~~~~~~~~~-------~~~~~~~~~S~~  179 (200)
                      .|.|....-+  .+..+..|+       .+|..++..|++
T Consensus       198 sKYDvFq~Fe--sekRkH~C~~LRf~Ah~yGaaLlmfSsk  235 (363)
T KOG3929|consen  198 SKYDVFQDFE--SEKRKHICKTLRFVAHYYGAALLMFSSK  235 (363)
T ss_pred             cchhhhcccc--HHHHHHHHHHHHHHHHHhhhHHHHHHHh
Confidence            9999866533  333344443       235555555555

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.50  E-value=0.00048  Score=48.21  Aligned_cols=150  Identities=15%  Similarity=0.177  Sum_probs=73.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhh----------hccccc-
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYA----------ALAPLY-  103 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~----------~~~~~~-  103 (200)
                      -|.|+|.+|||||||++++-.-+.+........... .......+|.   +.--|.--.+..+          .+|.+. 
T Consensus        34 VisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~gee-i~~k~~~~G~---l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmt  109 (256)
T COG4598          34 VISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEE-IRLKRDKDGQ---LKPADKRQLQRLRTRLGMVFQHFNLWSHMT  109 (256)
T ss_pred             EEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeE-EEeeeCCCCC---eeeCCHHHHHHHHHHhhHhhhhcchhHHHH
Confidence            488999999999999998876443322111111111 1111111111   1111111111111          122221 


Q ss_pred             -ccC-ccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCC-----CCCCcCCHHHHHHHHHHcCCeEE--
Q 028986          104 -YRG-AAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADL-----HEKREVPAQDGIEYAEKNGMFFI--  174 (200)
Q Consensus       104 -~~~-~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~-----~~~~~~~~~~~~~~~~~~~~~~~--  174 (200)
                       +.+ ..+-+-|+-.+..+..+....++..+-           +..|.|.     ....+.....++.++.+-.+.+|  
T Consensus       110 vLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVG-----------i~ek~~~YP~~LSGGQQQR~aIARaLameP~vmLFDE  178 (256)
T COG4598         110 VLENVIEAPVHVLGVSKAEAIERAEKYLAKVG-----------IAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDE  178 (256)
T ss_pred             HHHHHHhcchHhhcCCHHHHHHHHHHHHHHhC-----------chhhhhcCccccCchHHHHHHHHHHHhcCCceEeecC
Confidence             111 223344455555555555555555432           2234332     12233333444445544444444  


Q ss_pred             EecCCCCCCHHHHHHHHHHhhcccC
Q 028986          175 ETSAKTADNINQLFEVLITCTSSYC  199 (200)
Q Consensus       175 ~~S~~~~~~i~~~~~~i~~~~~~~~  199 (200)
                      ++||.+.+-+.+++..|.+.+++-+
T Consensus       179 PTSALDPElVgEVLkv~~~LAeEgr  203 (256)
T COG4598         179 PTSALDPELVGEVLKVMQDLAEEGR  203 (256)
T ss_pred             CcccCCHHHHHHHHHHHHHHHHhCC
Confidence            5999999999999999988877643

>TIGR02475 CobW cobalamin biosynthesis protein CobW

Probab=97.49  E-value=0.0033  Score=49.10  Aligned_cols=21  Identities=19%  Similarity=0.474  Sum_probs=18.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 028986           36 LVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        36 i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .+|.|.-|+|||||+++++..
T Consensus         7 ~iltGFLGaGKTTll~~ll~~   27 (341)
T TIGR02475         7 TIVTGFLGAGKTTLIRHLLQN   27 (341)
T ss_pred             EEEEECCCCCHHHHHHHHHhc
Confidence            567799999999999999864

A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).

>KOG2423 consensus Nucleolar GTPase [General function prediction only]

Probab=97.49  E-value=1.1e-05  Score=62.60  Aligned_cols=72  Identities=14%  Similarity=0.179  Sum_probs=47.0

Q ss_pred             CCCccccCCCCCCCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCCh
Q 028986           17 GLNNLENAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ   93 (200)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~   93 (200)
                      ..+.+++...-...++.|.|.++|.|++||||+||.|-..+.....+. .+.+.   .+.+-.-- -++.++|+||.
T Consensus       291 lI~llRQf~kLh~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPI-pGETK---VWQYItLm-krIfLIDcPGv  362 (572)
T KOG2423|consen  291 LIQLLRQFAKLHSDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPI-PGETK---VWQYITLM-KRIFLIDCPGV  362 (572)
T ss_pred             HHHHHHHHHhhccCccceeeeeecCCCCchHHHHHHHhhcccccccCC-CCcch---HHHHHHHH-hceeEecCCCc
Confidence            344445555545567889999999999999999999998876654432 22221   11110000 36889999993

>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]

Probab=97.48  E-value=0.00062  Score=54.70  Aligned_cols=128  Identities=18%  Similarity=0.191  Sum_probs=78.7

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHcCC------------CCCCCc--cccceeE--EEEEEE-------------ecCCcEE
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVRGQ------------FDPTSK--VTVGASF--LSQTIA-------------LQDSTTV   83 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~~~------------~~~~~~--~~~~~~~--~~~~~~-------------~~~~~~~   83 (200)
                      .-++.|+.+-.-|||||-..|....            |.....  ...+.+.  +.....             -.++..+
T Consensus        19 iRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~F   98 (842)
T KOG0469|consen   19 IRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNGF   98 (842)
T ss_pred             cccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCcce
Confidence            3478899999999999999997532            111100  1111111  111110             1244557


Q ss_pred             EEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCC-CCcCCHHHH
Q 028986           84 KFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE-KREVPAQDG  162 (200)
Q Consensus        84 ~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~-~~~~~~~~~  162 (200)
                      .+.++|.||+-++.+.....++-.|+.++|+|.-+.-..+.-.-+.+.+.+    .+.-+++.||.|..- +.+.+.+++
T Consensus        99 LiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~E----RIkPvlv~NK~DRAlLELq~~~EeL  174 (842)
T KOG0469|consen   99 LINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAE----RIKPVLVMNKMDRALLELQLSQEEL  174 (842)
T ss_pred             eEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHh----hccceEEeehhhHHHHhhcCCHHHH
Confidence            899999999999999999999999999999999876433322222233333    333467899999621 233444444


Q ss_pred             HH
Q 028986          163 IE  164 (200)
Q Consensus       163 ~~  164 (200)
                      -+
T Consensus       175 yq  176 (842)
T KOG0469|consen  175 YQ  176 (842)
T ss_pred             HH
Confidence            43

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.48  E-value=9.7e-05  Score=54.09  Aligned_cols=22  Identities=32%  Similarity=0.493  Sum_probs=20.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCC
Q 028986           36 LVLLGDSGVGKSCIVLRFVRGQ   57 (200)
Q Consensus        36 i~i~G~~~sGKSsli~~l~~~~   57 (200)
                      |+|+|++|||||||+|.+.+-.
T Consensus        32 vsilGpSGcGKSTLLriiAGL~   53 (248)
T COG1116          32 VAILGPSGCGKSTLLRLIAGLE   53 (248)
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            7899999999999999998854

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.47  E-value=0.00013  Score=43.05  Aligned_cols=21  Identities=29%  Similarity=0.567  Sum_probs=19.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 028986           36 LVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        36 i~i~G~~~sGKSsli~~l~~~   56 (200)
                      |++.|++|+||||+.+.|...
T Consensus         2 i~i~G~~gsGKst~~~~l~~~   22 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQ   22 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            788999999999999999875

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.41  E-value=0.00018  Score=52.35  Aligned_cols=23  Identities=26%  Similarity=0.320  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQ   57 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~   57 (200)
                      -++|+|++|||||||+|.+-+-.
T Consensus        33 ~vaI~GpSGSGKSTLLniig~ld   55 (226)
T COG1136          33 FVAIVGPSGSGKSTLLNLLGGLD   55 (226)
T ss_pred             EEEEECCCCCCHHHHHHHHhccc
Confidence            37899999999999999888754

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=97.41  E-value=0.00013  Score=49.06  Aligned_cols=22  Identities=23%  Similarity=0.409  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .++|+|++|+|||||++.+.+.
T Consensus        13 ~~~i~G~nGsGKStLl~~l~g~   34 (137)
T PF00005_consen   13 IVAIVGPNGSGKSTLLKALAGL   34 (137)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTS
T ss_pred             EEEEEccCCCccccceeeeccc
Confidence            5889999999999999999884

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.39  E-value=0.0023  Score=50.73  Aligned_cols=86  Identities=10%  Similarity=-0.020  Sum_probs=47.2

Q ss_pred             EEEEEEeCCChhhhh----hcccccccC---ccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCC
Q 028986           83 VKFEIWDTAGQERYA----ALAPLYYRG---AAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKR  155 (200)
Q Consensus        83 ~~~~l~D~~g~~~~~----~~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~  155 (200)
                      +.+.++||+|.....    .....++..   ..-.++|+|++..  ...+...+......   + +-=+|+||.|.... 
T Consensus       255 ~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~~~---~-~~~~I~TKlDet~~-  327 (388)
T PRK12723        255 FDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFSPF---S-YKTVIFTKLDETTC-  327 (388)
T ss_pred             CCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhcCC---C-CCEEEEEeccCCCc-
Confidence            579999999953211    111222221   2257899999875  23333333333221   1 23467899996432 


Q ss_pred             cCCHHHHHHHHHHcCCeEEEecC
Q 028986          156 EVPAQDGIEYAEKNGMFFIETSA  178 (200)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~S~  178 (200)
                         .-.+..++...+.|+..++.
T Consensus       328 ---~G~~l~~~~~~~~Pi~yit~  347 (388)
T PRK12723        328 ---VGNLISLIYEMRKEVSYVTD  347 (388)
T ss_pred             ---chHHHHHHHHHCCCEEEEeC
Confidence               23455666667777666554

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=97.38  E-value=0.00012  Score=50.98  Aligned_cols=22  Identities=18%  Similarity=0.481  Sum_probs=17.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      ||+|.|.+++|||||++.|...
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHc
Confidence            6999999999999999999874

>PRK04195 replication factor C large subunit; Provisional

Probab=97.36  E-value=0.0048  Score=50.61  Aligned_cols=23  Identities=30%  Similarity=0.556  Sum_probs=20.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcC
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      -.++|.|++|+|||++++.|.+.
T Consensus        40 ~~lLL~GppG~GKTtla~ala~e   62 (482)
T PRK04195         40 KALLLYGPPGVGKTSLAHALAND   62 (482)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            36889999999999999999885

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.35  E-value=0.00012  Score=56.83  Aligned_cols=43  Identities=16%  Similarity=0.174  Sum_probs=27.4

Q ss_pred             EEEEEEeCCChhhhh-hc------ccccccCccEEEEEEeCCCHHhHHHHH
Q 028986           83 VKFEIWDTAGQERYA-AL------APLYYRGAAVAVVVYDITSPDSFNKAQ  126 (200)
Q Consensus        83 ~~~~l~D~~g~~~~~-~~------~~~~~~~~d~~i~v~d~~~~~s~~~~~  126 (200)
                      +.+.|.||+|..... .+      ...++ ..|-+|+|.|++-...-+...
T Consensus       184 fdvIIvDTSGRh~qe~sLfeEM~~v~~ai-~Pd~vi~VmDasiGQaae~Qa  233 (483)
T KOG0780|consen  184 FDVIIVDTSGRHKQEASLFEEMKQVSKAI-KPDEIIFVMDASIGQAAEAQA  233 (483)
T ss_pred             CcEEEEeCCCchhhhHHHHHHHHHHHhhc-CCCeEEEEEeccccHhHHHHH
Confidence            689999999943211 11      11122 379999999999765554443

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=97.34  E-value=0.0002  Score=52.72  Aligned_cols=28  Identities=21%  Similarity=0.412  Sum_probs=24.3

Q ss_pred             CCCceeeEEEEcCCCCcHHHHHHHHHcC
Q 028986           29 AKNLRVKLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .-+..++++|+|++|||||+|+..|+..
T Consensus         9 l~~~~fr~viIG~sGSGKT~li~~lL~~   36 (241)
T PF04665_consen    9 LLKDPFRMVIIGKSGSGKTTLIKSLLYY   36 (241)
T ss_pred             hcCCCceEEEECCCCCCHHHHHHHHHHh
Confidence            3466789999999999999999999874

This is thought to be an ATPase involved in viral DNA packaging [].

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.34  E-value=0.0002  Score=47.65  Aligned_cols=21  Identities=24%  Similarity=0.479  Sum_probs=19.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 028986           36 LVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        36 i~i~G~~~sGKSsli~~l~~~   56 (200)
                      |++.|++|+|||++++.+...
T Consensus         1 ill~G~~G~GKT~l~~~la~~   21 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQY   21 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHH
T ss_pred             CEEECcCCCCeeHHHHHHHhh
Confidence            689999999999999999985

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=97.32  E-value=0.0016  Score=49.36  Aligned_cols=102  Identities=23%  Similarity=0.306  Sum_probs=60.7

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCCh---hh-------------
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ---ER-------------   95 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~---~~-------------   95 (200)
                      .-.+++|+|++|.|||+++++|....- +...    .+          ...+.+..+..|..   ..             
T Consensus        60 Rmp~lLivG~snnGKT~Ii~rF~~~hp-~~~d----~~----------~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~  124 (302)
T PF05621_consen   60 RMPNLLIVGDSNNGKTMIIERFRRLHP-PQSD----ED----------AERIPVVYVQMPPEPDERRFYSAILEALGAPY  124 (302)
T ss_pred             CCCceEEecCCCCcHHHHHHHHHHHCC-CCCC----CC----------CccccEEEEecCCCCChHHHHHHHHHHhCccc
Confidence            334799999999999999999998532 1111    11          01123444555441   11             


Q ss_pred             --------hhhcccccccCccEEEEEEeCCCH---HhHHHHHHHHHHHHHcC-CCCCeEEEEEeC
Q 028986           96 --------YAALAPLYYRGAAVAVVVYDITSP---DSFNKAQYWVKELQKHG-SPDIVMALVGNK  148 (200)
Q Consensus        96 --------~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK  148 (200)
                              ........++...+=++++|--..   .+....+.+++.++..+ .-.+|+|.|+++
T Consensus       125 ~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~  189 (302)
T PF05621_consen  125 RPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR  189 (302)
T ss_pred             CCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence                    111222345667788899985532   23444566666666654 457899998875

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>PRK06217 hypothetical protein; Validated

Probab=97.32  E-value=0.00021  Score=50.70  Aligned_cols=23  Identities=17%  Similarity=0.401  Sum_probs=20.9

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcC
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .+|+|+|.+|||||||.++|...
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~   24 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAER   24 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            36999999999999999999875

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=97.31  E-value=0.0015  Score=43.68  Aligned_cols=23  Identities=35%  Similarity=0.644  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQ   57 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~   57 (200)
                      .|++.|+.|+|||||++.+....
T Consensus        24 ~i~l~G~lGaGKTtl~~~l~~~l   46 (133)
T TIGR00150        24 VVLLKGDLGAGKTTLVQGLLQGL   46 (133)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHc
Confidence            58899999999999999998863

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>PRK03839 putative kinase; Provisional

Probab=97.31  E-value=0.00022  Score=50.42  Aligned_cols=22  Identities=23%  Similarity=0.445  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      +|+|+|+|||||||+.+.|...
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~   23 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEK   23 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999999774

>PLN02200 adenylate kinase family protein

Probab=97.30  E-value=0.00036  Score=51.51  Aligned_cols=34  Identities=26%  Similarity=0.373  Sum_probs=25.4

Q ss_pred             cCCCCCCCCceeeEEEEcCCCCcHHHHHHHHHcC
Q 028986           23 NAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        23 ~~~~~~~~~~~~~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      +..+....+..+.|+|+|+|||||||+...|...
T Consensus        33 ~~~~~~~~~~~~ii~I~G~PGSGKsT~a~~La~~   66 (234)
T PLN02200         33 ERGSSSKEKTPFITFVLGGPGSGKGTQCEKIVET   66 (234)
T ss_pred             cccCCccCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            3333333455678999999999999999988753

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=97.29  E-value=0.00022  Score=52.99  Aligned_cols=22  Identities=27%  Similarity=0.320  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      -++|+||.|||||||++.+.+-
T Consensus        30 i~~iiGpNG~GKSTLLk~l~g~   51 (258)
T COG1120          30 ITGILGPNGSGKSTLLKCLAGL   51 (258)
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            3789999999999999999873

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=97.29  E-value=0.00025  Score=47.92  Aligned_cols=21  Identities=48%  Similarity=0.767  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 028986           36 LVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        36 i~i~G~~~sGKSsli~~l~~~   56 (200)
                      |+|+|++|||||||++.|...
T Consensus         2 i~i~GpsGsGKstl~~~L~~~   22 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEE   22 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhc
Confidence            689999999999999999875

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.29  E-value=0.00027  Score=47.14  Aligned_cols=26  Identities=23%  Similarity=0.468  Sum_probs=22.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQFDP   60 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~~~~   60 (200)
                      .++|+|++|+|||++++.+.......
T Consensus         4 ~~~l~G~~G~GKTtl~~~l~~~~~~~   29 (148)
T smart00382        4 VILIVGPPGSGKTTLARALARELGPP   29 (148)
T ss_pred             EEEEECCCCCcHHHHHHHHHhccCCC
Confidence            68999999999999999999865433

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PRK14738 gmk guanylate kinase; Provisional

Probab=97.28  E-value=0.00054  Score=49.61  Aligned_cols=27  Identities=30%  Similarity=0.470  Sum_probs=22.1

Q ss_pred             CCceeeEEEEcCCCCcHHHHHHHHHcC
Q 028986           30 KNLRVKLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        30 ~~~~~~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .....-|+|+|++|||||||++.|...
T Consensus        10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738         10 PAKPLLVVISGPSGVGKDAVLARMRER   36 (206)
T ss_pred             CCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence            344556888999999999999999764

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=97.27  E-value=0.0012  Score=45.93  Aligned_cols=23  Identities=30%  Similarity=0.388  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQ   57 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~   57 (200)
                      .++|+|++|+|||||++.+.+..
T Consensus        28 ~~~l~G~nGsGKSTLl~~i~G~~   50 (163)
T cd03216          28 VHALLGENGAGKSTLMKILSGLY   50 (163)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58899999999999999998853

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>TIGR00235 udk uridine kinase

Probab=97.27  E-value=0.00031  Score=50.85  Aligned_cols=26  Identities=19%  Similarity=0.299  Sum_probs=22.0

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcC
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      +...-|+|+|++|||||||++.|.+.
T Consensus         4 ~~g~vi~I~G~sGsGKSTl~~~l~~~   29 (207)
T TIGR00235         4 PKGIIIGIGGGSGSGKTTVARKIYEQ   29 (207)
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence            34456899999999999999999864

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=97.27  E-value=0.00027  Score=50.31  Aligned_cols=22  Identities=27%  Similarity=0.490  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .|+|+|++|||||||++.|...
T Consensus         4 ~i~l~G~sGsGKsTl~~~l~~~   25 (186)
T PRK10078          4 LIWLMGPSGSGKDSLLAALRQR   25 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            5889999999999999999774

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=97.27  E-value=0.00026  Score=46.88  Aligned_cols=21  Identities=24%  Similarity=0.378  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 028986           36 LVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        36 i~i~G~~~sGKSsli~~l~~~   56 (200)
                      |+|.|.+||||||+++.|...
T Consensus         1 I~i~G~~GsGKtTia~~L~~~   21 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAER   21 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999999875

...

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=97.26  E-value=0.00026  Score=50.01  Aligned_cols=22  Identities=23%  Similarity=0.315  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .++|+|++|||||||++.|...
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~~   24 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARAR   24 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999775

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PRK14530 adenylate kinase; Provisional

Probab=97.26  E-value=0.00027  Score=51.55  Aligned_cols=21  Identities=29%  Similarity=0.575  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHc
Q 028986           35 KLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~   55 (200)
                      +|+|+|+|||||||+.+.|..
T Consensus         5 ~I~i~G~pGsGKsT~~~~La~   25 (215)
T PRK14530          5 RILLLGAPGAGKGTQSSNLAE   25 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999999975

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=97.26  E-value=0.00028  Score=47.81  Aligned_cols=22  Identities=14%  Similarity=0.447  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .|+|+|+.+||||||++.|++.
T Consensus         2 vv~VvG~~~sGKTTl~~~Li~~   23 (140)
T PF03205_consen    2 VVQVVGPKNSGKTTLIRKLINE   23 (140)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999884

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=97.25  E-value=0.00028  Score=45.22  Aligned_cols=20  Identities=35%  Similarity=0.798  Sum_probs=18.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHH
Q 028986           35 KLVLLGDSGVGKSCIVLRFV   54 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~   54 (200)
                      .++++|++|+|||||++.+.
T Consensus        17 ~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          17 GVLITGDSGIGKTELALELI   36 (107)
T ss_pred             EEEEEcCCCCCHHHHHHHhh
Confidence            57999999999999999875

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=97.23  E-value=0.00028  Score=49.51  Aligned_cols=23  Identities=43%  Similarity=0.642  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQ   57 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~   57 (200)
                      =+++.||+|+|||||+++|....
T Consensus         6 l~vlsgPSG~GKsTl~k~L~~~~   28 (191)
T COG0194           6 LIVLSGPSGVGKSTLVKALLEDD   28 (191)
T ss_pred             EEEEECCCCCCHHHHHHHHHhhc
Confidence            37788999999999999999865

>PRK13949 shikimate kinase; Provisional

Probab=97.22  E-value=0.00032  Score=49.13  Aligned_cols=22  Identities=27%  Similarity=0.518  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      +|+|+|++||||||+.+.|...
T Consensus         3 ~I~liG~~GsGKstl~~~La~~   24 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALARE   24 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999988764

>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional

Probab=97.21  E-value=0.0042  Score=47.29  Aligned_cols=20  Identities=30%  Similarity=0.419  Sum_probs=18.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHH
Q 028986           35 KLVLLGDSGVGKSCIVLRFV   54 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~   54 (200)
                      .|+|.|++||||||+++.|-
T Consensus         8 ~i~i~G~~GsGKtt~~~~l~   27 (288)
T PRK05416          8 LVIVTGLSGAGKSVALRALE   27 (288)
T ss_pred             EEEEECCCCCcHHHHHHHHH
Confidence            58899999999999999994

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=97.21  E-value=0.00034  Score=49.78  Aligned_cols=23  Identities=17%  Similarity=0.407  Sum_probs=20.9

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcC
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      -.++|+|++|||||||++.|.+.
T Consensus        26 ~~i~I~G~tGSGKTTll~aL~~~   48 (186)
T cd01130          26 KNILISGGTGSGKTTLLNALLAF   48 (186)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            36999999999999999999884

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell

Probab=97.20  E-value=0.013  Score=41.12  Aligned_cols=84  Identities=14%  Similarity=0.041  Sum_probs=50.0

Q ss_pred             EEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHH
Q 028986           84 KFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGI  163 (200)
Q Consensus        84 ~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~  163 (200)
                      .+.++|+|+.....  ....+..+|.+|++++.+.. ++..+..+++.+....  .....+|+|+.+.....  ..+...
T Consensus        64 d~viiD~p~~~~~~--~~~~l~~ad~viiv~~~~~~-s~~~~~~~~~~~~~~~--~~~~~iv~N~~~~~~~~--~~~~~~  136 (179)
T cd02036          64 DYILIDSPAGIERG--FITAIAPADEALLVTTPEIS-SLRDADRVKGLLEALG--IKVVGVIVNRVRPDMVE--GGDMVE  136 (179)
T ss_pred             CEEEEECCCCCcHH--HHHHHHhCCcEEEEeCCCcc-hHHHHHHHHHHHHHcC--CceEEEEEeCCcccccc--hhhHHH
Confidence            68999999753322  23446789999999988754 3445555556555431  23467889999864322  122233


Q ss_pred             HHHHHcCCeEE
Q 028986          164 EYAEKNGMFFI  174 (200)
Q Consensus       164 ~~~~~~~~~~~  174 (200)
                      .+.+.++.+++
T Consensus       137 ~~~~~~~~~v~  147 (179)
T cd02036         137 DIEEILGVPLL  147 (179)
T ss_pred             HHHHHhCCCEE
Confidence            44444566544

The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.

>KOG1533 consensus Predicted GTPase [General function prediction only]

Probab=97.20  E-value=0.00033  Score=50.82  Aligned_cols=21  Identities=29%  Similarity=0.393  Sum_probs=17.2

Q ss_pred             eeEEEEcCCCCcHHHHHHHHH
Q 028986           34 VKLVLLGDSGVGKSCIVLRFV   54 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~   54 (200)
                      +--+|+|||||||||.++...
T Consensus         3 fgqvVIGPPgSGKsTYc~g~~   23 (290)
T KOG1533|consen    3 FGQVVIGPPGSGKSTYCNGMS   23 (290)
T ss_pred             cceEEEcCCCCCccchhhhHH
Confidence            456899999999999876553

>PRK05480 uridine/cytidine kinase; Provisional

Probab=97.19  E-value=0.00043  Score=50.19  Aligned_cols=26  Identities=19%  Similarity=0.330  Sum_probs=22.9

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcC
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .+.+.|+|.|++|||||||++.|...
T Consensus         4 ~~~~iI~I~G~sGsGKTTl~~~l~~~   29 (209)
T PRK05480          4 KKPIIIGIAGGSGSGKTTVASTIYEE   29 (209)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            35678999999999999999999874

>PRK01889 GTPase RsgA; Reviewed

Probab=97.19  E-value=0.00028  Score=55.41  Aligned_cols=23  Identities=43%  Similarity=0.683  Sum_probs=21.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQ   57 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~   57 (200)
                      +++++|.+|+|||||+|.|.+..
T Consensus       197 ~~~lvG~sgvGKStLin~L~g~~  219 (356)
T PRK01889        197 TVALLGSSGVGKSTLVNALLGEE  219 (356)
T ss_pred             EEEEECCCCccHHHHHHHHHHhc
Confidence            68999999999999999999854

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=97.19  E-value=0.00038  Score=49.08  Aligned_cols=21  Identities=38%  Similarity=0.398  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHc
Q 028986           35 KLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~   55 (200)
                      .++|+|++|+|||||++.+..
T Consensus        23 ~~~l~G~nG~GKSTLl~~il~   43 (176)
T cd03238          23 LVVVTGVSGSGKSTLVNEGLY   43 (176)
T ss_pred             EEEEECCCCCCHHHHHHHHhh
Confidence            689999999999999998863

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>TIGR03263 guanyl_kin guanylate kinase

Probab=97.18  E-value=0.00035  Score=49.32  Aligned_cols=22  Identities=41%  Similarity=0.626  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      -|+|+|++|||||||++.|...
T Consensus         3 ii~l~G~~GsGKsTl~~~L~~~   24 (180)
T TIGR03263         3 LIVISGPSGVGKSTLVKALLEE   24 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHcc
Confidence            3789999999999999999984

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PRK14532 adenylate kinase; Provisional

Probab=97.18  E-value=0.00037  Score=49.59  Aligned_cols=23  Identities=30%  Similarity=0.550  Sum_probs=20.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcC
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      ++|+++|+|||||||+...|...
T Consensus         1 ~~i~~~G~pGsGKsT~a~~la~~   23 (188)
T PRK14532          1 MNLILFGPPAAGKGTQAKRLVEE   23 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            36999999999999999999763

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=97.17  E-value=0.005  Score=50.73  Aligned_cols=85  Identities=8%  Similarity=0.104  Sum_probs=44.9

Q ss_pred             cEEEEEEeCCCH---HhHHHHHHHHHHHHHcCCCCC-eEEEEEeCCCCCCCCc-CC-----H--HHHHHHHHHcCCeEEE
Q 028986          108 AVAVVVYDITSP---DSFNKAQYWVKELQKHGSPDI-VMALVGNKADLHEKRE-VP-----A--QDGIEYAEKNGMFFIE  175 (200)
Q Consensus       108 d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~-p~iiv~nK~D~~~~~~-~~-----~--~~~~~~~~~~~~~~~~  175 (200)
                      --+|+|=|.-+.   ++ ..+...+..+...  ... |+|+|++=+|...... ..     .  ....++....++..+.
T Consensus       133 ~kvILVEDlPN~~~~~~-~~f~~~L~~~l~~--~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~  209 (519)
T PF03215_consen  133 KKVILVEDLPNVFHRDT-SRFREALRQYLRS--SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIK  209 (519)
T ss_pred             ceEEEeeccccccchhH-HHHHHHHHHHHHc--CCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEE
Confidence            355666666542   22 3333333333322  234 9999999654322111 00     0  1112344455777788


Q ss_pred             ecCCCCCCHHHHHHHHHHhh
Q 028986          176 TSAKTADNINQLFEVLITCT  195 (200)
Q Consensus       176 ~S~~~~~~i~~~~~~i~~~~  195 (200)
                      ..+-...-+...+..|+.+-
T Consensus       210 FNpIa~T~mkKaL~rI~~~E  229 (519)
T PF03215_consen  210 FNPIAPTFMKKALKRILKKE  229 (519)
T ss_pred             ecCCCHHHHHHHHHHHHHHH
Confidence            87777777777777776653

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=97.17  E-value=0.00035  Score=50.21  Aligned_cols=21  Identities=24%  Similarity=0.488  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 028986           36 LVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        36 i~i~G~~~sGKSsli~~l~~~   56 (200)
                      |.|.|++|||||||++.|.+.
T Consensus         2 igi~G~~GsGKSTl~~~l~~~   22 (198)
T cd02023           2 IGIAGGSGSGKTTVAEEIIEQ   22 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            689999999999999999875

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop

Probab=97.17  E-value=0.0021  Score=42.40  Aligned_cols=76  Identities=18%  Similarity=0.194  Sum_probs=38.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCC--CCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcc-cccccCccEEE
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQFD--PTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALA-PLYYRGAAVAV  111 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~-~~~~~~~d~~i  111 (200)
                      -|++-|+-|+|||||++.+....-.  ...+||......+..   .....+++-++-..+.++..... ..++. .+.++
T Consensus        17 vi~L~GdLGaGKTtf~r~l~~~lg~~~~V~SPTF~l~~~Y~~---~~~~l~H~DLYRl~~~~e~~~~g~~e~~~-~~~i~   92 (123)
T PF02367_consen   17 VILLSGDLGAGKTTFVRGLARALGIDEEVTSPTFSLVNEYEG---GNIPLYHFDLYRLEDPEELEDLGLEEYLF-EDGIC   92 (123)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTT--S----TTTTSEEEEEE---TTEEEEEEE-TT-SSTHHHHHCTTTTCSS-SSEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCCCCcCCCCeEEEEEecC---CCceEEEeeccccCCHHHHHHCCchhhhC-CCCEE
Confidence            4888899999999999999874321  233343333322211   22233455555555555444332 22222 25555


Q ss_pred             EEE
Q 028986          112 VVY  114 (200)
Q Consensus       112 ~v~  114 (200)
                      ++=
T Consensus        93 ~IE   95 (123)
T PF02367_consen   93 VIE   95 (123)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            553

They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.17  E-value=0.00036  Score=50.78  Aligned_cols=21  Identities=29%  Similarity=0.531  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHc
Q 028986           35 KLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~   55 (200)
                      -|+|+|++|+|||||++.+.+
T Consensus        32 ~VaiIG~SGaGKSTLLR~lng   52 (258)
T COG3638          32 MVAIIGPSGAGKSTLLRSLNG   52 (258)
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            388999999999999999988

>PRK08233 hypothetical protein; Provisional

Probab=97.16  E-value=0.00045  Score=48.75  Aligned_cols=24  Identities=21%  Similarity=0.286  Sum_probs=20.9

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHcC
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .+-|+|.|.+|||||||.+.|...
T Consensus         3 ~~iI~I~G~~GsGKtTla~~L~~~   26 (182)
T PRK08233          3 TKIITIAAVSGGGKTTLTERLTHK   26 (182)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhh
Confidence            356888999999999999999874

>cd03110 Fer4_NifH_child This protein family's function is unkown

Probab=97.16  E-value=0.0036  Score=44.12  Aligned_cols=84  Identities=21%  Similarity=0.247  Sum_probs=57.7

Q ss_pred             EEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHH
Q 028986           82 TVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQD  161 (200)
Q Consensus        82 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~  161 (200)
                      .+.+.++|+|+....  .....+..+|.+++++..+.. +...+..+++.+.+.   +.|+.+|+||.|....   ...+
T Consensus        92 ~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~~~-~~~~~~~~~~~l~~~---~~~~~vV~N~~~~~~~---~~~~  162 (179)
T cd03110          92 GAELIIIDGPPGIGC--PVIASLTGADAALLVTEPTPS-GLHDLERAVELVRHF---GIPVGVVINKYDLNDE---IAEE  162 (179)
T ss_pred             CCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCCcc-cHHHHHHHHHHHHHc---CCCEEEEEeCCCCCcc---hHHH
Confidence            468999999965321  223456789999999998843 455566666666544   4568899999996432   2456


Q ss_pred             HHHHHHHcCCeEE
Q 028986          162 GIEYAEKNGMFFI  174 (200)
Q Consensus       162 ~~~~~~~~~~~~~  174 (200)
                      +.+++++.+++++
T Consensus       163 ~~~~~~~~~~~vl  175 (179)
T cd03110         163 IEDYCEEEGIPIL  175 (179)
T ss_pred             HHHHHHHcCCCeE
Confidence            6777777887755

It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=97.15  E-value=0.00038  Score=49.41  Aligned_cols=21  Identities=24%  Similarity=0.487  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHc
Q 028986           35 KLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~   55 (200)
                      .|+|+|++||||||+++.|..
T Consensus         5 ii~i~G~~GsGKsTl~~~l~~   25 (188)
T TIGR01360         5 IIFIVGGPGSGKGTQCEKIVE   25 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999999984

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=97.15  E-value=0.0004  Score=46.86  Aligned_cols=22  Identities=23%  Similarity=0.466  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .|+++|++|+|||+|++.+...
T Consensus         1 ~vlL~G~~G~GKt~l~~~la~~   22 (139)
T PF07728_consen    1 PVLLVGPPGTGKTTLARELAAL   22 (139)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999998874

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=97.14  E-value=0.00038  Score=53.78  Aligned_cols=22  Identities=41%  Similarity=0.569  Sum_probs=20.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCC
Q 028986           36 LVLLGDSGVGKSCIVLRFVRGQ   57 (200)
Q Consensus        36 i~i~G~~~sGKSsli~~l~~~~   57 (200)
                      ++++||+|||||||++.+.+-.
T Consensus        32 ~vllGPSGcGKSTlLr~IAGLe   53 (338)
T COG3839          32 VVLLGPSGCGKSTLLRMIAGLE   53 (338)
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            7899999999999999998854

>PTZ00088 adenylate kinase 1; Provisional

Probab=97.13  E-value=0.00047  Score=50.71  Aligned_cols=24  Identities=33%  Similarity=0.573  Sum_probs=21.2

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHcC
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .++|+|+|+|||||||+.+.|...
T Consensus         6 ~mrIvl~G~PGsGK~T~a~~La~~   29 (229)
T PTZ00088          6 PLKIVLFGAPGVGKGTFAEILSKK   29 (229)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            467999999999999999998653

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=97.12  E-value=0.00045  Score=50.39  Aligned_cols=22  Identities=27%  Similarity=0.318  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .++|+|++|+|||||++.+.+.
T Consensus        32 ~~~l~G~nGsGKSTLl~~i~Gl   53 (218)
T cd03255          32 FVAIVGPSGSGKSTLLNILGGL   53 (218)
T ss_pred             EEEEEcCCCCCHHHHHHHHhCC
Confidence            5889999999999999999985

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=97.12  E-value=0.0048  Score=42.54  Aligned_cols=23  Identities=26%  Similarity=0.369  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQ   57 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~   57 (200)
                      .++|+|++|+|||||++.+.+..
T Consensus        27 ~~~i~G~nGsGKStll~~l~g~~   49 (157)
T cd00267          27 IVALVGPNGSGKSTLLRAIAGLL   49 (157)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999998853

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK00625 shikimate kinase; Provisional

Probab=97.12  E-value=0.00045  Score=48.53  Aligned_cols=22  Identities=23%  Similarity=0.277  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      +|+++|.+||||||+.+.|...
T Consensus         2 ~I~LiG~pGsGKTT~~k~La~~   23 (173)
T PRK00625          2 QIFLCGLPTVGKTSFGKALAKF   23 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999999653

>PRK10646 ADP-binding protein; Provisional

Probab=97.12  E-value=0.0058  Score=41.89  Aligned_cols=23  Identities=30%  Similarity=0.533  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQ   57 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~   57 (200)
                      -|++-|+-|+|||||++.+...-
T Consensus        30 vi~L~GdLGaGKTtf~rgl~~~L   52 (153)
T PRK10646         30 VIYLYGDLGAGKTTFSRGFLQAL   52 (153)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc
Confidence            47899999999999999998753

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=97.11  E-value=0.0011  Score=46.63  Aligned_cols=44  Identities=23%  Similarity=0.174  Sum_probs=27.9

Q ss_pred             cEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCC
Q 028986          108 AVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE  153 (200)
Q Consensus       108 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~  153 (200)
                      |++++|+|+..+.+... ..+.+.+. ....+.|+++|+||+|+..
T Consensus         1 DvVl~VvDar~p~~~~~-~~i~~~~~-l~~~~kp~IlVlNK~DL~~   44 (172)
T cd04178           1 DVILEVLDARDPLGCRC-PQVEEAVL-QAGGNKKLVLVLNKIDLVP   44 (172)
T ss_pred             CEEEEEEECCCCCCCCC-HHHHHHHH-hccCCCCEEEEEehhhcCC
Confidence            78999999987632211 12222221 1233578999999999964

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>cd01131 PilT Pilus retraction ATPase PilT

Probab=97.11  E-value=0.00044  Score=49.75  Aligned_cols=22  Identities=23%  Similarity=0.403  Sum_probs=19.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCC
Q 028986           36 LVLLGDSGVGKSCIVLRFVRGQ   57 (200)
Q Consensus        36 i~i~G~~~sGKSsli~~l~~~~   57 (200)
                      |+|+|++||||||+++.+....
T Consensus         4 ilI~GptGSGKTTll~~ll~~~   25 (198)
T cd01131           4 VLVTGPTGSGKSTTLAAMIDYI   25 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7899999999999999988753

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]

Probab=97.11  E-value=0.00045  Score=46.64  Aligned_cols=26  Identities=27%  Similarity=0.483  Sum_probs=22.9

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcC
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      ....||+|.|-||+|||||..++...
T Consensus         5 r~~PNILvtGTPG~GKstl~~~lae~   30 (176)
T KOG3347|consen    5 RERPNILVTGTPGTGKSTLAERLAEK   30 (176)
T ss_pred             hcCCCEEEeCCCCCCchhHHHHHHHH
Confidence            45679999999999999999999853

>PRK14531 adenylate kinase; Provisional

Probab=97.11  E-value=0.0005  Score=48.78  Aligned_cols=23  Identities=30%  Similarity=0.570  Sum_probs=20.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcC
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .+|+++|+|||||||+.+.|...
T Consensus         3 ~~i~i~G~pGsGKsT~~~~la~~   25 (183)
T PRK14531          3 QRLLFLGPPGAGKGTQAARLCAA   25 (183)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999999764

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.10  E-value=0.00038  Score=49.95  Aligned_cols=22  Identities=36%  Similarity=0.475  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      -.+++||+|||||||++.|-+.
T Consensus        35 VTAlIGPSGcGKST~LR~lNRm   56 (253)
T COG1117          35 VTALIGPSGCGKSTLLRCLNRM   56 (253)
T ss_pred             eEEEECCCCcCHHHHHHHHHhh
Confidence            3679999999999999998774

>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function

Probab=97.10  E-value=0.0015  Score=48.02  Aligned_cols=26  Identities=27%  Similarity=0.401  Sum_probs=22.7

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcC
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      ...-++++.|++|+||||+++++++.
T Consensus        50 ~pannvLL~G~rGtGKSSlVkall~~   75 (249)
T PF05673_consen   50 LPANNVLLWGARGTGKSSLVKALLNE   75 (249)
T ss_pred             CCCcceEEecCCCCCHHHHHHHHHHH
Confidence            34558999999999999999999984

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	200
1huq_A	164	1.8a Crystal Structure Of The Monomeric Gtpase Rab5		4e-52
1z07_A	166	Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166		2e-51
1tu3_A	171	Crystal Structure Of Rab5 Complex With Rabaptin5 C-		3e-51
1n6h_A	170	Crystal Structure Of Human Rab5a Length = 170		5e-51
1z0d_A	167	Gdp-bound Rab5c Gtpase Length = 167		5e-51
2efc_B	181	Ara7-GdpATVPS9A Length = 181		6e-51
1n6o_A	170	Crystal Structure Of Human Rab5a A30k Mutant Comple		8e-51
1n6p_A	170	Crystal Structure Of Human Rab5a A30e Mutant Comple		9e-51
1n6n_A	170	Crystal Structure Of Human Rab5a A30r Mutant Comple		9e-51
1n6r_A	170	Crystal Structure Of Human Rab5a A30l Mutant Comple		1e-50
1n6i_A	170	Crystal Structure Of Human Rab5a A30p Mutant Comple		1e-50
2hei_A	179	Crystal Structure Of Human Rab5b In Complex With Gd		1e-50
1tu4_A	171	Crystal Structure Of Rab5-Gdp Complex Length = 171		2e-50
3mjh_A	168	Crystal Structure Of Human Rab5a In Complex With Th		3e-50
1ek0_A	170	Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17		3e-44
1yvd_A	169	Gppnhp-Bound Rab22 Gtpase Length = 169		2e-43
2fg5_A	192	Crystal Structure Of Human Rab31 In Complex With A		3e-43
1z0j_A	170	Structure Of Gtp-Bound Rab22q64l Gtpase In Complex		3e-42
1yzk_A	184	Gppnhp Bound Rab11 Gtpase Length = 184		6e-38
1oiv_A	191	X-Ray Structure Of The Small G Protein Rab11a In Co		7e-38
2hv8_A	172	Crystal Structure Of Gtp-Bound Rab11 In Complex Wit		2e-37
3bfk_A	181	Crystal Structure Of Plasmodium Falciparum Rab11a I		3e-37
2gzd_A	173	Crystal Structure Of Rab11 In Complex With Rab11-Fi		4e-37
2d7c_A	167	Crystal Structure Of Human Rab11 In Complex With Fi		5e-37
1oiw_A	191	X-ray Structure Of The Small G Protein Rab11a In Co		6e-37
2ew1_A	201	Crystal Structure Of Rab30 In Complex With A Gtp An		7e-37
2f9l_A	199	3d Structure Of Inactive Human Rab11b Gtpase Length		2e-36
1z0a_A	174	Gdp-Bound Rab2a Gtpase Length = 174		4e-36
2oil_A	193	Crystal Structure Of Human Rab25 In Complex With Gd		1e-35
3tso_A	178	Structure Of The Cancer Associated Rab25 Protein In		1e-35
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		2e-35
3cpj_B	223	Crystal Structure Of Ypt31 In Complex With Yeast Ra		3e-35
2fe4_A	171	The Crystal Structure Of Human Neuronal Rab6b In It		4e-35
2y8e_A	179	Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo		1e-34
2a5j_A	191	Crystal Structure Of Human Rab2b Length = 191		1e-34
2gil_A	162	Structure Of The Extremely Slow Gtpase Rab6a In The		2e-34
1yzq_A	170	Gppnhp-Bound Rab6 Gtpase Length = 170		5e-34
1x3s_A	195	Crystal Structure Of Human Rab18 In Complex With Gp		1e-33
3rwm_B	185	Crystal Structure Of Ypt32 In Complex With Gppnhp L		1e-33
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		2e-33
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		3e-33
3cwz_A	188	Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188		3e-33
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		3e-33
4fmc_B	171	Espg-Rab1 Complex Length = 171		3e-33
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		3e-33
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		4e-33
3bbp_A	211	Rab6-Gtp:gcc185 Rab Binding Domain Complex Length =		5e-33
4dkx_A	216	Crystal Structure Of The Rab 6a'(Q72l) Length = 216		5e-33
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		6e-33
1g17_A	170	Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)		7e-33
2fu5_C	183	Structure Of Rab8 In Complex With Mss4 Length = 183		9e-33
3qbt_A	174	Crystal Structure Of Ocrl1 540-678 In Complex With		9e-33
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		1e-32
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		2e-32
1g16_A	170	Crystal Structure Of Sec4-Gdp Length = 170		3e-32
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		3e-32
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		3e-32
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		4e-32
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		4e-32
2bcg_Y	206	Structure Of Doubly Prenylated Ypt1:gdi Complex Len		7e-32
1ukv_Y	206	Structure Of Rabgdp-Dissociation Inhibitor In Compl		8e-32
2ocy_C	170	Complex Of The Guanine Exchange Factor Sec2p And Th		9e-32
1yzn_A	185	Gppnhp-Bound Ypt1p Gtpase Length = 185		2e-31
1yzu_A	170	Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng		3e-31
1yzt_A	184	Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng		3e-31
1z0f_A	179	Gdp-Bound Rab14 Gtpase Length = 179		2e-30
1d5c_A	162	Crystal Structure Of Plasmodium Falciparum Rab6 Com		3e-30
2o52_A	200	Crystal Structure Of Human Rab4b In Complex With Gd		5e-30
4drz_A	196	Crystal Structure Of Human Rab14 Length = 196		1e-29
2gf9_A	189	Crystal Structure Of Human Rab3d In Complex With Gd		2e-29
3dz8_A	191	Crystal Structure Of Human Rab3b Gtpase Bound With		3e-29
2g6b_A	180	Crystal Structure Of Human Rab26 In Complex With A		4e-29
2hup_A	201	Crystal Structure Of Human Rab43 In Complex With Gd		6e-29
2bmd_A	186	High Resolution Structure Of Gdp-Bound Human Rab4a		1e-28
3clv_A	208	Crystal Structure Of Rab5a From Plasmodium Falcipar		2e-28
1yu9_A	175	Gppnhp-Bound Rab4a Length = 175		5e-28
3rab_A	169	Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169		1e-27
3tw8_B	181	Gef Domain Of Dennd 1b In Complex With Rab Gtpase R		1e-27
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		2e-27
1z0k_A	172	Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W		3e-27
2f7s_A	217	The Crystal Structure Of Human Rab27b Bound To Gdp		3e-26
1zbd_A	203	Structural Basis Of Rab Effector Specificity: Cryst		4e-26
4fmc_F	117	Espg-Rab1 Complex Length = 117		1e-25
2iez_A	220	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		2e-25
2if0_A	200	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		2e-25
1vg0_B	207	The Crystal Structures Of The Rep-1 Protein In Comp		3e-25
1vg1_A	185	Gdp-bound Rab7 Length = 185		3e-25
2zet_A	203	Crystal Structure Of The Small Gtpase Rab27b Comple		6e-25
2iey_A	195	Crystal Structure Of Mouse Rab27b Bound To Gdp In H		6e-25
3law_A	207	Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2		7e-25
1z06_A	189	Gppnhp-Bound Rab33 Gtpase Length = 189		8e-25
1t91_A	207	Crystal Structure Of Human Small Gtpase Rab7(Gtp) L		2e-24
3bc1_A	195	Crystal Structure Of The Complex Rab27a-slp2a Lengt		2e-24
2g77_B	198	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		5e-24
1ky2_A	182	Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182		5e-23
4f38_A	195	Crystal Structure Of Geranylgeranylated Rhoa In Com		3e-22
3tvd_A	193	Crystal Structure Of Mouse Rhoa-Gtp Complex Length		3e-22
1x86_B	196	Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-A		4e-22
1s1c_A	183	Crystal Structure Of The Complex Between The Human		4e-22
3lw8_A	185	Shigella Ipgb2 In Complex With Human Rhoa, Gdp And		4e-22
3kz1_E	182	Crystal Structure Of The Complex Of Pdz-Rhogef DhPH		4e-22
1lb1_B	192	Crystal Structure Of The Dbl And Pleckstrin Homolog		4e-22
1cxz_A	182	Crystal Structure Of Human Rhoa Complexed With The		5e-22
2p5s_A	199	Rab Domain Of Human Rasef In Complex With Gdp Lengt		5e-22
1ow3_B	193	Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With		4e-21
1cc0_A	190	Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Le		5e-21
2gcn_A	201	Crystal Structure Of The Human Rhoc-Gdp Complex Len		5e-21
3msx_A	180	Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With		5e-21
1xcg_B	178	Crystal Structure Of Human Rhoa In Complex With DhP		5e-21
1tx4_B	177	RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177		5e-21
2gco_A	201	Crystal Structure Of The Human Rhoc-gppnhp Complex		5e-21
2ocb_A	180	Crystal Structure Of Human Rab9b In Complex With A		7e-21
1s8f_A	177	Crystal Structure Of Rab9 Complexed To Gdp Reveals		9e-21
1yzl_A	179	Gppnhp-Bound Rab9 Gtpase Length = 179		1e-20
1dpf_A	180	Crystal Structure Of A Mg-Free Form Of Rhoa Complex		1e-20
1wms_A	177	High Resolution Crystal Structure Of Human Rab9 Gtp		2e-20
1kmq_A	184	Crystal Structure Of A Constitutively Activated Rho		4e-20
4djt_A	218	Crystal Structure Of A Nuclear Gtp-Binding Protein		5e-20
1z2c_A	193	Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With		5e-20
3brw_D	167	Structure Of The Rap-Rapgap Complex Length = 167		1e-19
4dxa_A	169	Co-Crystal Structure Of Rap1 In Complex With Krit1		2e-19
2kwi_A	178	Ralb-Rlip76 (Ralbp1) Complex Length = 178		2e-19
2ke5_A	174	Solution Structure And Dynamics Of The Small Gtpase		2e-19
1z22_A	168	Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac		8e-19
1c1y_A	167	Crystal Structure Of Rap.Gmppnp In Complex With The		1e-18
1gua_A	167	Human Rap1a, Residues 1-167, Double Mutant (E30d,K3		2e-18
2bov_A	206	Molecular Recognition Of An Adp-Ribosylating Clostr		2e-18
2a78_A	187	Crystal Structure Of The C3bot-Rala Complex Reveals		2e-18
1uad_A	175	Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi		2e-18
2fv8_A	207	The Crystal Structure Of Rhob In The Gdp-Bound Stat		5e-18
1u8y_A	168	Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal		8e-18
2nty_C	180	Rop4-Gdp-Prone8 Length = 180		1e-17
4dso_A	189	Small-Molecule Ligands Bind To A Distinct Pocket In		2e-17
4epr_A	170	Discovery Of Small Molecules That Bind To K-Ras And		2e-17
2wbl_C	180	Three-Dimensional Structure Of A Binary Rop-Prone C		2e-17
1zc3_A	175	Crystal Structure Of The Ral-Binding Domain Of Exo8		2e-17
2j0v_A	212	The Crystal Structure Of Arabidopsis Thaliana Rac7-		7e-17
2hxs_A	178	Crystal Structure Of Rab28a Gtpase In The Inactive		7e-17
2j1l_A	214	Crystal Structure Of Human Rho-Related Gtp-Binding		1e-16
3bwd_D	182	Crystal Structure Of The Plant Rho Protein Rop5 Len		1e-16
1agp_A	166	Three-Dimensional Structures And Properties Of A Tr		2e-16
421p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		2e-16
1clu_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		3e-16
1jah_A	166	H-Ras P21 Protein Mutant G12p, Complexed With Guano		4e-16
1qg4_A	216	Canine Gdp-Ran F72y Mutant Length = 216		2e-15
1wa5_A	176	Crystal Structure Of The Exportin Cse1p Complexed W		2e-15
3a58_B	188	Crystal Structure Of Sec3p - Rho1p Complex From Sac		3e-15
2bku_A	177	Kap95p:rangtp Complex Length = 177		4e-15
1rrp_A	204	Structure Of The Ran-Gppnhp-Ranbd1 Complex Length =		4e-15
3ea5_A	216	Kap95p Binding Induces The Switch Loops Of Rangdp T		4e-15
3gj0_A	221	Crystal Structure Of Human Rangdp Length = 221		5e-15
1qg2_A	216	Canine Gdp-Ran R76e Mutant Length = 216		5e-15
1a2k_C	216	Gdpran-Ntf2 Complex Length = 216		5e-15
2atv_A	196	The Crystal Structure Of Human Rerg In The Gdp Boun		6e-15
1qbk_C	216	Structure Of The Karyopherin Beta2-ran Gppnhp Nucle		6e-15
2q3h_A	201	The Crystal Structure Of Rhoua In The Gdp-bound Sta		8e-15
1byu_A	216	Canine Gdp-Ran Length = 216		8e-15
3oes_A	201	Crystal Structure Of The Small Gtpase Rhebl1 Length		1e-14
2x19_A	172	Crystal Structure Of Importin13 - Rangtp Complex Le		1e-14
4dvg_A	188	Crystal Structure Of E. Histolytica Formin1 Bound T		1e-14
3ref_B	194	Crystal Structure Of Ehrho1 Bound To Gdp And Magnes		1e-14
3icq_B	171	Karyopherin Nuclear State Length = 171		1e-14
3nby_C	176	Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclea		2e-14
3nc1_C	182	Crystal Structure Of The Crm1-Rangtp Complex Length		2e-14
3m1i_A	219	Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex		2e-14
3ran_A	216	Canine Gdp-Ran Q69l Mutant Length = 216		4e-14
3gj4_A	221	Crystal Structure Of Human Rangdp-Nup153znf3 Comple		6e-14
4epx_A	170	Discovery Of Small Molecules That Bind To K-Ras And		3e-13
4ept_A	170	Discovery Of Small Molecules That Bind To K-Ras And		3e-13
3b13_B	184	Crystal Structure Of The Dhr-2 Domain Of Dock2 In C		4e-13
3con_A	190	Crystal Structure Of The Human Nras Gtpase Bound Wi		4e-13
1hh4_A	192	Rac1-Rhogdi Complex Involved In Nadph Oxidase Activ		5e-13
2fn4_A	181	The Crystal Structure Of Human Ras-Related Protein,		5e-13
2h7v_A	188	Co-crystal Structure Of Ypka-rac1 Length = 188		5e-13
1mh1_A	186	Small G-Protein Length = 186		5e-13
2ery_A	172	The Crystal Structure Of The Ras Related Protein Rr		5e-13
2erx_A	172	Crystal Structure Of Diras2 In Complex With Gdp And		5e-13
1g4u_R	184	Crystal Structure Of The Salmonella Tyrosine Phosph		6e-13
3gft_A	187	Human K-Ras In Complex With A Gtp Analogue Length =		6e-13
3th5_A	204	Crystal Structure Of Wild-Type Rac1 Length = 204		7e-13
2yin_C	196	Structure Of The Complex Between Dock2 And Rac1. Le		7e-13
2vrw_A	184	Critical Structural Role For The Ph And C1 Domains		7e-13
1i4d_D	192	Crystal Structure Analysis Of Rac1-Gdp Complexed Wi		7e-13
3sbd_A	187	Crystal Structure Of Rac1 P29s Mutant Length = 187		8e-13
2fju_A	178	Activated Rac1 Bound To Its Effector Phospholipase		8e-13
3sua_A	184	Crystal Structure Of The Intracellular Domain Of Pl		8e-13
1foe_B	177	Crystal Structure Of Rac1 In Complex With The Guani		8e-13
1he1_C	176	Crystal Structure Of The Complex Between The Gap Do		9e-13
1ds6_A	192	Crystal Structure Of A Rac-Rhogdi Complex Length =		9e-13
2w2t_A	185	Rac2 (G12v) In Complex With Gdp Length = 185		1e-12
2w2v_A	184	Rac2 (G12v) In Complex With Gtpgs Length = 184		1e-12
4q21_A	189	Molecular Switch For Signal Transduction: Structura		2e-12
2c5l_A	173	Structure Of Plc Epsilon Ras Association Domain Wit		2e-12
4gzm_A	204	Crystal Structure Of Rac1 F28l Mutant Length = 204		2e-12
2cl0_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		2e-12
2ic5_A	180	Crystal Structure Of Human Rac3 Grown In The Presen		2e-12
2g0n_A	179	The Crystal Structure Of The Human Rac3 In Complex		2e-12
2c2h_A	192	Crystal Structure Of The Human Rac3 In Complex With		2e-12
4efm_A	171	Crystal Structure Of H-Ras G12v In Complex With Gpp		2e-12
4efl_A	171	Crystal Structure Of H-Ras Wt In Complex With Gppnh		2e-12
3sea_A	167	Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bo		3e-12
221p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		3e-12
2cld_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		3e-12
3ddc_A	166	Crystal Structure Of Nore1a In Complex With Ras Len		3e-12
1wq1_R	166	Ras-Rasgap Complex Length = 166		4e-12
1rvd_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		4e-12
3t5g_A	181	Structure Of Fully Modified Farnesylated Rheb In Co		4e-12
1lfd_B	167	Crystal Structure Of The Active Ras Protein Complex		4e-12
2x1v_A	166	Crystal Structure Of The Activating H-Ras I163f Mut		4e-12
6q21_A	171	Molecular Switch For Signal Transduction: Structura		4e-12
2q21_A	171	Crystal Structures At 2.2 Angstroms Resolution Of T		4e-12
3v4f_A	166	H-Ras Peg 400CACL2, ORDERED OFF Length = 166		4e-12
3k9n_A	166	Allosteric Modulation Of H-Ras Gtpase Length = 166		4e-12
1i4t_D	192	Crystal Structure Analysis Of Rac1-Gmppnp In Comple		5e-12
4gzl_A	204	Crystal Structure Of Rac1 Q61l Mutant Length = 204		5e-12
1e96_A	192	Structure Of The RacP67PHOX COMPLEX Length = 192		5e-12
2l0x_A	169	Solution Structure Of The 21 Kda Gtpase Rheb Bound		5e-12
3ryt_C	180	The Plexin A1 Intracellular Region In Complex With		5e-12
1xtq_A	177	Structure Of Small Gtpase Human Rheb In Complex Wit		6e-12
2quz_A	166	Crystal Structure Of The Activating H-Rask117r Muta		7e-12
2g3y_A	211	Crystal Structure Of The Human Small Gtpase Gem Len		7e-12
3kkm_A	172	Crystal Structure Of H-Ras T35s In Complex With Gpp		7e-12
2wkp_A	332	Structure Of A Photoactivatable Rac1 Containing Lov		7e-12
2wkr_A	332	Structure Of A Photoactivatable Rac1 Containing The		8e-12
2wkq_A	332	Structure Of A Photoactivatable Rac1 Containing The		8e-12
3lo5_A	166	Crystal Structure Of The Dominant Negative S17n Mut		9e-12
1iaq_A	166	C-H-Ras P21 Protein Mutant With Thr 35 Replaced By		9e-12
1lf0_A	166	Crystal Structure Of Rasa59g In The Gtp-Bound Form		1e-11
621p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		1e-11
521p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		1e-11
2rgb_A	166	Crystal Structure Of H-Rasq61k-Gppnhp Length = 166		1e-11
3i3s_R	166	Crystal Structure Of H-Ras With Thr50 Replaced By I		2e-11
4efn_A	171	Crystal Structure Of H-Ras Q61l In Complex With Gpp		2e-11
1gwn_A	205	The Crystal Structure Of The Core Domain Of RhoeRND		2e-11
1xj0_A	166	Crystal Structure Of The Gdp-Bound Form Of The Rasg		3e-11
1xcm_A	167	Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mu		3e-11
1m7b_A	184	Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATI		3e-11
721p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		3e-11
2rgc_A	166	Crystal Structure Of H-Rasq61v-Gppnhp Length = 166		3e-11
1zvq_A	166	Structure Of The Q61g Mutant Of Ras In The Gdp-Boun		3e-11
3vhl_B	195	Crystal Structure Of The Dhr-2 Domain Of Dock8 In C		3e-11
2v55_B	200	Mechanism Of Multi-site Phosphorylation From A Rock		3e-11
2rga_A	166	Crystal Structure Of H-Rasq61i-Gppnhp Length = 166		4e-11
1zw6_A	166	Crystal Structure Of The Gtp-Bound Form Of Rasq61g		4e-11
1nvv_Q	166	Structural Evidence For Feedback Activation By Rasg		4e-11
3gcg_A	182	Crystal Structure Of Map And Cdc42 Complex Length =		6e-11
4did_A	193	Crystal Structure Of Salmonella Effector N-Terminal		6e-11
2dfk_B	194	Crystal Structure Of The Cdc42-Collybistin Ii Compl		6e-11
1gzs_A	180	Crystal Structure Of The Complex Between The Gef Do		6e-11
2wm9_B	190	Structure Of The Complex Between Dock9 And Cdc42. L		6e-11
1grn_A	191	Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.		6e-11
2odb_A	192	The Crystal Structure Of Human Cdc42 In Complex Wit		7e-11
1aje_A	194	Cdc42 From Human, Nmr, 20 Structures Length = 194		7e-11
2qrz_A	189	Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is		7e-11
1kz7_B	188	Crystal Structure Of The DhPH FRAGMENT OF MURINE DB		8e-11
1doa_A	191	Structure Of The Rho Family Gtp-Binding Protein Cdc		8e-11
1ees_A	178	Solution Structure Of Cdc42hs Complexed With A Pept		8e-11
1cee_A	179	Solution Structure Of Cdc42 In Complex With The Gtp		8e-11
1a4r_B	191	G12v Mutant Of Human Placental Cdc42 Gtpase In The		9e-11
1am4_D	177	Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. S		9e-11
3eg5_A	178	Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex W		9e-11
2atx_A	194	Crystal Structure Of The Tc10 Gppnhp Complex Length		1e-10
2ht6_A	174	Crystal Structure Of Human Gem G-Domain Bound To Gd		1e-10
2cjw_B	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		1e-10
1an0_A	190	Cdc42hs-Gdp Complex Length = 190		1e-10
2cjw_A	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		1e-10
2gf0_A	199	The Crystal Structure Of The Human Diras1 Gtpase In		1e-10
2kb0_A	178	Cdc42(T35a) Length = 178		1e-10
3qbv_A	178	Structure Of Designed Orthogonal Interaction Betwee		2e-10
1ryf_A	203	Alternative Splicing Of Rac1 Generates Rac1b, A Sel		2e-10
2yc2_C	208	Intraflagellar Transport Complex 25-27 From Chlamyd		4e-10
2ase_A	178	Nmr Structure Of The F28l Mutant Of Cdc42hs Length		4e-10
1nf3_A	195	Structure Of Cdc42 In A Complex With The Gtpase-Bin		4e-10
2nzj_A	175	The Crystal Structure Of Rem1 In Complex With Gdp L		4e-10
3pir_A	183	Crystal Structure Of M-Rasd41e In Complex With Gppn		5e-10
1cf4_A	184	Cdc42ACK GTPASE-Binding Domain Complex Length = 184		7e-10
1x1r_A	178	Crystal Structure Of M-Ras In Complex With Gdp Leng		7e-10
3rap_R	167	The Small G Protein Rap2 In A Non Catalytic Complex		5e-09
3kkp_A	183	Crystal Structure Of M-Ras P40d In Complex With Gpp		8e-09
2dpx_A	174	Crystal Structure Of Human Rad Gtpase Length = 174		1e-08
3q72_A	166	Crystal Structure Of Rad G-Domain-Gtp Analog Comple		1e-08
2gjs_A	176	The Crystal Structure Of Human Rrad In Complex With		1e-08
3q3j_B	214	Crystal Structure Of Plexin A2 Rbd In Complex With		2e-08
2rex_B	197	Crystal Structure Of The Effector Domain Of Plxnb1		3e-08
2cls_A	198	The Crystal Structure Of The Human Rnd1 Gtpase In T		4e-08
3kko_A	183	Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX		5e-08
3cbq_A	195	Crystal Structure Of The Human Rem2 Gtpase With Bou		6e-08
4aii_A	180	Crystal Structure Of The Rat Rem2 Gtpase - G Domain		6e-08
3q85_A	169	Crystal Structure Of Rem2 G-Domain -Gtp Analog Comp		2e-07
3lvr_E	497	The Crystal Structure Of Asap3 In Complex With Arf6		9e-07
1e0s_A	174	Small G Protein Arf6-Gdp Length = 174		9e-07
2a5d_A	175	Structural Basis For The Activation Of Cholera Toxi		1e-06
3n5c_A	162	Crystal Structure Of Arf6delta13 Complexed With Gdp		2e-06
4fme_C	160	Espg-Rab1-Arf6 Complex Length = 160		3e-06
3pcr_B	162	Structure Of Espg-Arf6 Complex Length = 162		5e-06
2a5g_A	175	Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length		7e-06
2w83_A	165	Crystal Structure Of The Arf6 Gtpase In Complex Wit		1e-05
3vhx_A	172	The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesi		1e-05
3c5c_A	187	Crystal Structure Of Human Ras-Like, Family 12 Prot		5e-05
1zd9_A	188	Structure Of Human Adp-Ribosylation Factor-Like 10b		6e-05
2al7_A	186	Structure Of Human Adp-Ribosylation Factor-Like 10c		1e-04
2h18_A	193	Structure Of Human Adp-Ribosylation Factor-Like 10b		1e-04
3dpu_A	535	Roccor Domain Tandem Of Rab Family Protein (Roco) L		2e-04
1mr3_F	181	Saccharomyces Cerevisiae Adp-Ribosylation Factor 2		2e-04
2k5u_A	181	Solution Structure Of Myirstoylated Yeast Arf1 Prot		8e-04

>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164

Iteration: 1
 Score =  200 bits (509), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 94/156 (60%), Positives = 119/156 (76%), Gaps = 1/156 (0%)
Query: 33  RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAG 92
           + KLVLLG+S VGKS +VLRFV+GQF    + T+GA+FL+QT+ L D TTVKFEIWDTAG
Sbjct: 3   QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCL-DDTTVKFEIWDTAG 61
Query: 93  QERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLH 152
           QERY +LAP+YYRG       YDIT+ D+F +A+ WVKELQ+  SP+IV+AL GNKADL 
Sbjct: 62  QERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLA 121
Query: 153 EKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
            KR V  Q+   YA+ N + F+ETSAKTA N+N++F
Sbjct: 122 SKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIF 157

>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166

Iteration: 1
 Score =  197 bits (502), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 93/156 (59%), Positives = 118/156 (75%), Gaps = 1/156 (0%)
Query: 33  RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAG 92
           + KLVLLG+S VGKS +VLRFV+GQF    + T+ A+FL+QT+ L D TTVKFEIWDTAG
Sbjct: 5   QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCL-DDTTVKFEIWDTAG 63
Query: 93  QERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLH 152
           QERY +LAP+YYRG       YDIT+ D+F +A+ WVKELQ+  SP+IV+AL GNKADL 
Sbjct: 64  QERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLA 123
Query: 153 EKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
            KR V  Q+   YA+ N + F+ETSAKTA N+N++F
Sbjct: 124 SKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIF 159

>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171

Iteration: 1
 Score =  197 bits (501), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 93/156 (59%), Positives = 119/156 (76%), Gaps = 1/156 (0%)
Query: 33  RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAG 92
           + KLVLLG+S VGKS +VLRFV+GQF    + T+GA+FL+QT+ L D TTVKFEIWDTAG
Sbjct: 7   QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCL-DDTTVKFEIWDTAG 65
Query: 93  QERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLH 152
           QERY +LAP+YYRG       YDIT+ +SF +A+ WVKELQ+  SP+IV+AL GNKADL 
Sbjct: 66  QERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLA 125
Query: 153 EKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
            KR V  Q+   YA+ N + F+ETSAKT+ N+N++F
Sbjct: 126 NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIF 161

>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170

Iteration: 1
 Score =  197 bits (500), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 93/156 (59%), Positives = 119/156 (76%), Gaps = 1/156 (0%)
Query: 33  RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAG 92
           + KLVLLG+S VGKS +VLRFV+GQF    + T+GA+FL+QT+ L D TTVKFEIWDTAG
Sbjct: 6   QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCL-DDTTVKFEIWDTAG 64
Query: 93  QERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLH 152
           QERY +LAP+YYRG       YDIT+ +SF +A+ WVKELQ+  SP+IV+AL GNKADL 
Sbjct: 65  QERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLA 124
Query: 153 EKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
            KR V  Q+   YA+ N + F+ETSAKT+ N+N++F
Sbjct: 125 NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIF 160

>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167

Iteration: 1
 Score =  197 bits (500), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 93/156 (59%), Positives = 118/156 (75%), Gaps = 1/156 (0%)
Query: 33  RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAG 92
           + KLVLLG+S VGKS +VLRFV+GQF    + T+GA+FL+QT+ L D TTVKFEIWDTAG
Sbjct: 5   QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCL-DDTTVKFEIWDTAG 63
Query: 93  QERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLH 152
            ERY +LAP+YYRG       YDIT+ D+F +A+ WVKELQ+  SP+IV+AL GNKADL 
Sbjct: 64  LERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLA 123
Query: 153 EKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
            KR V  Q+   YA+ N + F+ETSAKTA N+N++F
Sbjct: 124 SKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIF 159

>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181

Iteration: 1
 Score =  196 bits (498), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 90/159 (56%), Positives = 122/159 (76%), Gaps = 1/159 (0%)
Query: 30  KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWD 89
           K++  KLVLLGD G GKS +VLRFV+ QF    + T+GA+F SQT+A+ D+T VKFEIWD
Sbjct: 9   KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDAT-VKFEIWD 67
Query: 90  TAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKA 149
           TAGQERY +LAP+YYRG       +D+T+  SF +A+ WV+ELQ  G+P++VMAL GNK+
Sbjct: 68  TAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKS 127
Query: 150 DLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
           DL + R+V A+D   YA++NG+FF+ETSAKTA N+ ++F
Sbjct: 128 DLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIF 166

>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  196 bits (498), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 93/156 (59%), Positives = 119/156 (76%), Gaps = 1/156 (0%)
Query: 33  RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAG 92
           + KLVLLG+S VGKS +VLRFV+GQF    + T+GA+FL+QT+ L D TTVKFEIWDTAG
Sbjct: 6   QFKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCL-DDTTVKFEIWDTAG 64
Query: 93  QERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLH 152
           QERY +LAP+YYRG       YDIT+ +SF +A+ WVKELQ+  SP+IV+AL GNKADL 
Sbjct: 65  QERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLA 124
Query: 153 EKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
            KR V  Q+   YA+ N + F+ETSAKT+ N+N++F
Sbjct: 125 NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIF 160

>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  196 bits (497), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 93/156 (59%), Positives = 119/156 (76%), Gaps = 1/156 (0%)
Query: 33  RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAG 92
           + KLVLLG+S VGKS +VLRFV+GQF    + T+GA+FL+QT+ L D TTVKFEIWDTAG
Sbjct: 6   QFKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCL-DDTTVKFEIWDTAG 64
Query: 93  QERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLH 152
           QERY +LAP+YYRG       YDIT+ +SF +A+ WVKELQ+  SP+IV+AL GNKADL 
Sbjct: 65  QERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLA 124
Query: 153 EKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
            KR V  Q+   YA+ N + F+ETSAKT+ N+N++F
Sbjct: 125 NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIF 160

>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  196 bits (497), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 93/156 (59%), Positives = 119/156 (76%), Gaps = 1/156 (0%)
Query: 33  RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAG 92
           + KLVLLG+S VGKS +VLRFV+GQF    + T+GA+FL+QT+ L D TTVKFEIWDTAG
Sbjct: 6   QFKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCL-DDTTVKFEIWDTAG 64
Query: 93  QERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLH 152
           QERY +LAP+YYRG       YDIT+ +SF +A+ WVKELQ+  SP+IV+AL GNKADL 
Sbjct: 65  QERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLA 124
Query: 153 EKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
            KR V  Q+   YA+ N + F+ETSAKT+ N+N++F
Sbjct: 125 NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIF 160

>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  195 bits (496), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 93/156 (59%), Positives = 119/156 (76%), Gaps = 1/156 (0%)
Query: 33  RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAG 92
           + KLVLLG+S VGKS +VLRFV+GQF    + T+GA+FL+QT+ L D TTVKFEIWDTAG
Sbjct: 6   QFKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCL-DDTTVKFEIWDTAG 64
Query: 93  QERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLH 152
           QERY +LAP+YYRG       YDIT+ +SF +A+ WVKELQ+  SP+IV+AL GNKADL 
Sbjct: 65  QERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLA 124
Query: 153 EKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
            KR V  Q+   YA+ N + F+ETSAKT+ N+N++F
Sbjct: 125 NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIF 160

>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170

Iteration: 1
 Score =  195 bits (496), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 93/156 (59%), Positives = 119/156 (76%), Gaps = 1/156 (0%)
Query: 33  RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAG 92
           + KLVLLG+S VGKS +VLRFV+GQF    + T+GA+FL+QT+ L D TTVKFEIWDTAG
Sbjct: 6   QFKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCL-DDTTVKFEIWDTAG 64
Query: 93  QERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLH 152
           QERY +LAP+YYRG       YDIT+ +SF +A+ WVKELQ+  SP+IV+AL GNKADL 
Sbjct: 65  QERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLA 124
Query: 153 EKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
            KR V  Q+   YA+ N + F+ETSAKT+ N+N++F
Sbjct: 125 NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIF 160

>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179

Iteration: 1
 Score =  195 bits (495), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 94/162 (58%), Positives = 120/162 (74%), Gaps = 1/162 (0%)
Query: 27  SDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFE 86
           S +K  + KLVLLG+S VGKS +VLRFV+GQF    + T+GA+FL+Q++ L D TTVKFE
Sbjct: 2   SASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCL-DDTTVKFE 60
Query: 87  IWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVG 146
           IWDTAGQERY +LAP+YYRG       YDIT+ ++F +A+ WVKELQ+  SP IV+AL G
Sbjct: 61  IWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAG 120
Query: 147 NKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
           NKADL  KR V  ++   YA+ N + F+ETSAKTA N+N LF
Sbjct: 121 NKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLF 162

>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171

Iteration: 1
 Score =  195 bits (495), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 93/159 (58%), Positives = 118/159 (74%), Gaps = 1/159 (0%)
Query: 33  RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAG 92
           + KLVLLG+S VGKS +VLRFV+GQF    + T+GA+FL+QT+ L D TTVKFEIWDTAG
Sbjct: 7   QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCL-DDTTVKFEIWDTAG 65
Query: 93  QERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLH 152
           QERY +LAP YYRG       YDIT+ +SF +A+ WVKELQ+  SP+IV+AL GNKADL 
Sbjct: 66  QERYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLA 125
Query: 153 EKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVL 191
            KR V  Q+   YA+ N + F ETSAKT+ N+N++F  +
Sbjct: 126 NKRAVDFQEAQSYADDNSLLFXETSAKTSXNVNEIFXAI 164

>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168

Iteration: 1
 Score =  194 bits (493), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 92/156 (58%), Positives = 118/156 (75%), Gaps = 1/156 (0%)
Query: 33  RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAG 92
           + KLVLLG+S VGKS +VLRFV+GQF    + T+GA+FL+QT+ L D TTVKFEIWDTAG
Sbjct: 5   QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCL-DDTTVKFEIWDTAG 63
Query: 93  QERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLH 152
            ERY +LAP+YYRG       YDIT+ +SF +A+ WVKELQ+  SP+IV+AL GNKADL 
Sbjct: 64  LERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLA 123
Query: 153 EKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
            KR V  Q+   YA+ N + F+ETSAKT+ N+N++F
Sbjct: 124 NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIF 159

>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170

Iteration: 1
 Score =  174 bits (441), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 85/158 (53%), Positives = 113/158 (71%), Gaps = 4/158 (2%)
Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           +KLVLLG++ VGKS IVLRFV   F    + T+GA+FL+Q + + + T VKFEIWDTAGQ
Sbjct: 4   IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHT-VKFEIWDTAGQ 62
Query: 94  ERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKAD-LH 152
           ER+A+LAP YYR        YD+T P SF KA++WVKEL +  S DI++ALVGNK D L 
Sbjct: 63  ERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQ 122
Query: 153 E--KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
           E  +R+V  ++G + AE+ G+ F ETSAKT +N+N +F
Sbjct: 123 EGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVF 160

>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169

Iteration: 1
 Score =  171 bits (434), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 82/155 (52%), Positives = 108/155 (69%), Gaps = 1/155 (0%)
Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           +K+ LLGD+GVGKS IV RFV   FDP    T+GASF+++T+  Q+    KF IWDTAGQ
Sbjct: 6   LKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELH-KFLIWDTAGQ 64
Query: 94  ERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE 153
           ER+ ALAP+YYRG       YDIT  ++F+  + WV+EL++HG P IV+A+ GNK DL +
Sbjct: 65  ERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTD 124
Query: 154 KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
            REV  +D  +YA+     F+ETSAK A NIN+LF
Sbjct: 125 VREVMERDAKDYADSIHAIFVETSAKNAININELF 159

>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192

Iteration: 1
 Score =  171 bits (432), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 84/156 (53%), Positives = 107/156 (68%), Gaps = 1/156 (0%)
Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           +K+ LLGD+GVGKS IV RFV+  FD     T+GASF+++T+   +    KF IWDTAGQ
Sbjct: 24  LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELH-KFLIWDTAGQ 82
Query: 94  ERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE 153
           ER+ +LAP+YYRG       YDIT  DSF   + WVKEL++HG  +IVMA+ GNK DL +
Sbjct: 83  ERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSD 142
Query: 154 KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFE 189
            REVP +D  EYAE  G   +ETSAK A NI +LF+
Sbjct: 143 IREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQ 178

>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170

Iteration: 1
 Score =  167 bits (424), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 80/155 (51%), Positives = 107/155 (69%), Gaps = 1/155 (0%)
Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           +K+ LLGD+GVGKS I+ RFV   FDP    T+GASF+++T+  Q+    KF IWDTAG 
Sbjct: 7   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELH-KFLIWDTAGL 65
Query: 94  ERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE 153
           ER+ ALAP+YYRG       YDIT  ++F+  + WV+EL++HG P IV+A+ GNK DL +
Sbjct: 66  ERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTD 125
Query: 154 KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
            REV  +D  +YA+     F+ETSAK A NIN+LF
Sbjct: 126 VREVMERDAKDYADSIHAIFVETSAKNAININELF 160

>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184

Iteration: 1
 Score =  153 bits (387), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 73/159 (45%), Positives = 103/159 (64%), Gaps = 1/159 (0%)
Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           K+VL+GDSGVGKS ++ RF R +F+  SK T+G  F +++I + D  T+K +IWDTAGQE
Sbjct: 22  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV-DGKTIKAQIWDTAGQE 80
Query: 95  RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
           RY A+   YYRG       YDI    ++   + W+KEL+ H   +IV+ LVGNK+DL   
Sbjct: 81  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 140
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT 193
           R VP  +   +AEKNG+ FIETSA  + N+   F+ ++T
Sbjct: 141 RAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILT 179

>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191

Iteration: 1
 Score =  153 bits (386), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 73/159 (45%), Positives = 103/159 (64%), Gaps = 1/159 (0%)
Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           K+VL+GDSGVGKS ++ RF R +F+  SK T+G  F +++I + D  T+K +IWDTAGQE
Sbjct: 31  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV-DGKTIKAQIWDTAGQE 89
Query: 95  RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
           RY A+   YYRG       YDI    ++   + W+KEL+ H   +IV+ LVGNK+DL   
Sbjct: 90  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 149
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT 193
           R VP  +   +AEKNG+ FIETSA  + N+   F+ ++T
Sbjct: 150 RAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILT 188

>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172

Iteration: 1
 Score =  152 bits (383), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 74/167 (44%), Positives = 105/167 (62%), Gaps = 1/167 (0%)
Query: 27  SDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFE 86
           SD  +   K+VL+GDSGVGKS ++ RF R +F+  SK T+G  F +++I + D  T+K +
Sbjct: 2   SDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV-DGKTIKAQ 60
Query: 87  IWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVG 146
           IWDTAG ERY A+   YYRG       YDI    ++   + W+KEL+ H   +IV+ LVG
Sbjct: 61  IWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVG 120
Query: 147 NKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT 193
           NK+DL   R VP  +   +AEKNG+ FIETSA  + N+   F+ ++T
Sbjct: 121 NKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILT 167

>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181

Iteration: 1
 Score =  151 bits (381), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 72/158 (45%), Positives = 102/158 (64%)
Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           K+VL+GDSGVGKS ++ RF R +F+  SK T+G  F +++I L+++  +K +IWDTAGQE
Sbjct: 9   KIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAGQE 68
Query: 95  RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
           RY A+   YYRG       YDIT  +SF   + W+KEL+ +   +IV+ LVGNK+DL   
Sbjct: 69  RYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADSNIVILLVGNKSDLKHL 128
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
           R +   D  +YA+K  + FIETSA  A N+   F  L+
Sbjct: 129 RVINDNDATQYAKKEKLAFIETSALEATNVELAFHQLL 166

>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173

Iteration: 1
 Score =  150 bits (379), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 72/159 (45%), Positives = 102/159 (64%), Gaps = 1/159 (0%)
Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           K+VL+GDSGVGKS ++ RF R +F+  SK T+G  F +++I + D  T+K +IWDTAG E
Sbjct: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV-DGKTIKAQIWDTAGLE 71
Query: 95  RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
           RY A+   YYRG       YDI    ++   + W+KEL+ H   +IV+ LVGNK+DL   
Sbjct: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDLRHL 131
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT 193
           R VP  +   +AEKNG+ FIETSA  + N+   F+ ++T
Sbjct: 132 RAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILT 170

>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167

Iteration: 1
 Score =  150 bits (379), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 72/159 (45%), Positives = 102/159 (64%), Gaps = 1/159 (0%)
Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           K+VL+GDSGVGKS ++ RF R +F+  SK T+G  F +++I + D  T+K +IWDTAG E
Sbjct: 7   KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV-DGKTIKAQIWDTAGLE 65
Query: 95  RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
           RY A+   YYRG       YDI    ++   + W+KEL+ H   +IV+ LVGNK+DL   
Sbjct: 66  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDLRHL 125
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT 193
           R VP  +   +AEKNG+ FIETSA  + N+   F+ ++T
Sbjct: 126 RAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILT 164

>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191

Iteration: 1
 Score =  150 bits (378), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 72/159 (45%), Positives = 102/159 (64%), Gaps = 1/159 (0%)
Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           K+VL+GDSGVGKS ++ RF R +F+  SK T+G  F +++I + D  T+K +IWDTAG E
Sbjct: 31  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV-DGKTIKAQIWDTAGLE 89
Query: 95  RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
           RY A+   YYRG       YDI    ++   + W+KEL+ H   +IV+ LVGNK+DL   
Sbjct: 90  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 149
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT 193
           R VP  +   +AEKNG+ FIETSA  + N+   F+ ++T
Sbjct: 150 RAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILT 188

>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201

Iteration: 1
 Score =  149 bits (377), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 68/164 (41%), Positives = 105/164 (64%), Gaps = 1/164 (0%)
Query: 25  GSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVK 84
           GS +  +   K+VL+G++GVGK+C+V RF +G F P    T+G  F+ +T+ + +   VK
Sbjct: 18  GSMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEI-NGEKVK 76
Query: 85  FEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMAL 144
            +IWDTAGQER+ ++   YYR        YDIT  +SF     W++E++++ S  ++  L
Sbjct: 77  LQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVL 136
Query: 145 VGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
           VGNK DL E+REV  Q   E++E   M+++ETSAK +DN+ +LF
Sbjct: 137 VGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLF 180

>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199

Iteration: 1
 Score =  148 bits (374), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 71/159 (44%), Positives = 102/159 (64%), Gaps = 1/159 (0%)
Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           K+VL+GDSGVGKS ++ RF R +F+  SK T+G  F +++I + D  T+K +IWDTAGQE
Sbjct: 7   KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV-DGKTIKAQIWDTAGQE 65
Query: 95  RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
           RY  +   YYRG       YDI    ++   + W+KEL+ H   +IV+ LVGNK+DL   
Sbjct: 66  RYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 125
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT 193
           R VP  +   +AEKN + FIETSA  + N+ + F+ ++T
Sbjct: 126 RAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILT 164

>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174

Iteration: 1
 Score =  147 bits (371), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 63/154 (40%), Positives = 103/154 (66%), Gaps = 1/154 (0%)
Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           K +++GD+GVGKSC++L+F   +F P   +T+G  F ++ I + D   +K +IWDTAGQE
Sbjct: 12  KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITI-DGKQIKLQIWDTAGQE 70
Query: 95  RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
            + ++   YYRG       YDIT  D+FN    W+++ ++H + ++V+ L+GNK+DL  +
Sbjct: 71  SFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESR 130
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
           REV  ++G  +A ++G+ F+ETSAKTA N+ + F
Sbjct: 131 REVKKEEGEAFAREHGLIFMETSAKTASNVEEAF 164

>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193

Iteration: 1
 Score =  145 bits (367), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 71/168 (42%), Positives = 104/168 (61%), Gaps = 2/168 (1%)
Query: 25  GSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVK 84
           GS D  N   K+VL+G+SGVGK+ ++ RF R +F   S+ T+G  F ++T+ L  +  VK
Sbjct: 18  GSED-YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVML-GTAAVK 75
Query: 85  FEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMAL 144
            +IWDTAG ERY A+   YYRG       +D+T   ++   + W+KEL  H    IV+ L
Sbjct: 76  AQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVML 135
Query: 145 VGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
           VGNK+DL + REVP ++   +AE NG+ F+ETSA  + N+   FE ++
Sbjct: 136 VGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVL 183

>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178

Iteration: 1
 Score =  145 bits (366), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 68/162 (41%), Positives = 101/162 (62%), Gaps = 1/162 (0%)
Query: 31  NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDT 90
           N   K+VL+G+SGVGK+ ++ RF R +F   S+ T+G  F ++T+ L  +  VK +IWDT
Sbjct: 8   NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVML-GTAAVKAQIWDT 66
Query: 91  AGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKAD 150
           AG ERY A+   YYRG       +D+T   ++   + W+KEL  H    IV+ LVGNK+D
Sbjct: 67  AGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSD 126
Query: 151 LHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
           L + REVP ++   +AE NG+ F+ETSA  + N+   FE ++
Sbjct: 127 LSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVL 168

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score =  145 bits (365), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 70/157 (44%), Positives = 101/157 (64%), Gaps = 1/157 (0%)
Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           KL+L+GDSGVGKSC++LRF    +  +   T+G  F  +TI+L++ T VK +IWDTAGQE
Sbjct: 11  KLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKT-VKLQIWDTAGQE 69
Query: 95  RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
           R+  +   YYRG       YD+T  DSF+  + W++E+ ++   ++   LVGNK DL  K
Sbjct: 70  RFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKLLVGNKCDLVSK 129
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVL 191
           R V + +G E A+ +G+ FIETSAK A N+ Q F  +
Sbjct: 130 RVVTSDEGRELADSHGIKFIETSAKNAYNVEQAFHTM 166

>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223

Iteration: 1
 Score =  144 bits (363), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 65/162 (40%), Positives = 105/162 (64%), Gaps = 1/162 (0%)
Query: 31  NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDT 90
           +L  K+VL+GDSGVGKS ++ RF + +F+  SK T+G  F ++T+ ++    +K +IWDT
Sbjct: 11  DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIE-GKRIKAQIWDT 69
Query: 91  AGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKAD 150
           AGQERY A+   YYRG       YDI+   S+    +W+ EL+++   ++ + L+GNK+D
Sbjct: 70  AGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSD 129
Query: 151 LHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
           L   R VP ++   +A++N + F ETSA  ++N+++ FE LI
Sbjct: 130 LAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELI 171

>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171

Iteration: 1
 Score =  144 bits (362), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 66/156 (42%), Positives = 102/156 (65%), Gaps = 1/156 (0%)
Query: 33  RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAG 92
           + KLV LG+  VGK+ ++ RF+   FD T + T+G  FLS+T+ L+D T V+ ++WDTAG
Sbjct: 2   KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT-VRLQLWDTAG 60
Query: 93  QERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLH 152
           QER+ +L P Y R        YDIT+ +SF +   W+ +++     D+++ LVGNK DL 
Sbjct: 61  QERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLA 120
Query: 153 EKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
           +KR++  ++G + A++  + FIETSAKT  N+ QLF
Sbjct: 121 DKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLF 156

>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179

Iteration: 1
 Score =  142 bits (359), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 66/157 (42%), Positives = 101/157 (64%), Gaps = 1/157 (0%)
Query: 33  RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAG 92
           + KLV LG+  VGK+ ++ RF+   FD T + T+G  FLS+T+ L+D T V+ ++WDTAG
Sbjct: 14  KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT-VRLQLWDTAG 72
Query: 93  QERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLH 152
           QER+ +L P Y R        YDIT+ +SF++   W+ +++     D+++ LVGNK DL 
Sbjct: 73  QERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLS 132
Query: 153 EKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFE 189
           +KR+V  ++G   A++  + FIETSAK   N+ QLF 
Sbjct: 133 DKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFR 169

>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191

Iteration: 1
 Score =  142 bits (359), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 61/154 (39%), Positives = 103/154 (66%), Gaps = 1/154 (0%)
Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           K +++GD+GVGKSC++L+F   +F P   +T+G  F ++ + + D   +K +IWDTAGQE
Sbjct: 23  KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNI-DGKQIKLQIWDTAGQE 81
Query: 95  RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
            + ++   YYRG       YDIT  ++FN    W+++ ++H S ++V+ L+GNK+DL  +
Sbjct: 82  SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESR 141
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
           R+V  ++G  +A ++G+ F+ETSAKTA N+ + F
Sbjct: 142 RDVKREEGEAFAREHGLIFMETSAKTACNVEEAF 175

>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162

Iteration: 1
 Score =  141 bits (356), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 66/157 (42%), Positives = 100/157 (63%), Gaps = 1/157 (0%)
Query: 33  RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAG 92
           + KLV LG+  VGK+ ++ RF+   FD T + T+G  FLS+T+ L+D T V+ ++WDTAG
Sbjct: 1   KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT-VRLQLWDTAG 59
Query: 93  QERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLH 152
           QER+ +L P Y R        YDIT+ +SF +   W+ +++     D+++ LVGNK DL 
Sbjct: 60  QERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLA 119
Query: 153 EKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFE 189
           +KR+V  ++G   A++  + FIETSAK   N+ QLF 
Sbjct: 120 DKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFR 156

>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170

Iteration: 1
 Score =  140 bits (353), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 65/157 (41%), Positives = 100/157 (63%), Gaps = 1/157 (0%)
Query: 33  RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAG 92
           + KLV LG+  VGK+ ++ RF+   FD T + T+G  FLS+T+ L+D T ++ ++WDTAG
Sbjct: 6   KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT-IRLQLWDTAG 64
Query: 93  QERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLH 152
           QER+ +L P Y R        YDIT+ +SF +   W+ +++     D+++ LVGNK DL 
Sbjct: 65  QERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLA 124
Query: 153 EKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFE 189
           +KR+V  ++G   A++  + FIETSAK   N+ QLF 
Sbjct: 125 DKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFR 161

>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195

Iteration: 1
 Score =  139 bits (349), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 72/160 (45%), Positives = 98/160 (61%), Gaps = 3/160 (1%)
Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           +K++++G+SGVGKS ++LRF    FDP    T+G  F  +TI++ D    K  IWDTAGQ
Sbjct: 16  LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISV-DGNKAKLAIWDTAGQ 74
Query: 94  ERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSP-DIVMALVGNKADLH 152
           ER+  L P YYRG       YD+T  D+F K   W+ EL+ + +  DIV  LVGNK D  
Sbjct: 75  ERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVGNKID-K 133
Query: 153 EKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
           E REV   +G+++A K+   FIE SAKT D +   FE L+
Sbjct: 134 ENREVDRNEGLKFARKHSXLFIEASAKTCDGVQCAFEELV 173

>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185

Iteration: 1
 Score =  139 bits (349), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 65/160 (40%), Positives = 99/160 (61%), Gaps = 1/160 (0%)
Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           K+VL+GDSGVGKS ++ RF   +F+  SK T+G  F ++TI +++   +K +IWDTAG E
Sbjct: 12  KIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKK-IKAQIWDTAGLE 70
Query: 95  RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
           RY A+   YYRG       YDI+   S+    +W+ EL+++   ++ + L+GNK+DL   
Sbjct: 71  RYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKSDLAHL 130
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLITC 194
           R VP  +   +A +N M F ETSA  +DN+++ F  LI  
Sbjct: 131 RAVPTDEAKNFAMENQMLFTETSALNSDNVDKAFRELIVA 170

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score =  138 bits (348), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 68/157 (43%), Positives = 97/157 (61%), Gaps = 1/157 (0%)
Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           KL+L+GDSGVGKSC++LRF    +  +   T+G  F  +TI L D  T+K +IWDTAGQE
Sbjct: 1   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQE 59
Query: 95  RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
           R+  +   YYRG       YD+T  +SFN  + W++E+ ++ S ++   LVGNK DL  K
Sbjct: 60  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 119
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVL 191
           + V      E+A+  G+ F+ETSAK A N+ Q F  +
Sbjct: 120 KVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTM 156

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score =  137 bits (346), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 68/157 (43%), Positives = 97/157 (61%), Gaps = 1/157 (0%)
Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           KL+L+GDSGVGKSC++LRF    +  +   T+G  F  +TI L D  T+K +IWDTAGQE
Sbjct: 18  KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQE 76
Query: 95  RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
           R+  +   YYRG       YD+T  +SFN  + W++E+ ++ S ++   LVGNK DL  K
Sbjct: 77  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 136
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVL 191
           + V      E+A+  G+ F+ETSAK A N+ Q F  +
Sbjct: 137 KVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTM 173

>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188

Iteration: 1
 Score =  137 bits (346), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 65/156 (41%), Positives = 99/156 (63%), Gaps = 1/156 (0%)
Query: 33  RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAG 92
           + KLV LG+  VGK+ ++ RF+   FD T + T+G  FLS+T+ L+D T V+ ++WDTAG
Sbjct: 6   KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT-VRLQLWDTAG 64
Query: 93  QERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLH 152
            ER+ +L P Y R        YDIT+ +SF +   W+ +++     D+++ LVGNK DL 
Sbjct: 65  LERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLA 124
Query: 153 EKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
           +KR+V  ++G   A++  + FIETSAK   N+ QLF
Sbjct: 125 DKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLF 160

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score =  137 bits (346), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 68/154 (44%), Positives = 96/154 (62%), Gaps = 1/154 (0%)
Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           KL+L+GDSGVGKSC++LRF    +  +   T+G  F  +TI L D  T+K +IWDTAGQE
Sbjct: 8   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQE 66
Query: 95  RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
           R+  +   YYRG       YD+T  +SFN  + W++E+ ++ S ++   LVGNK DL  K
Sbjct: 67  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 126
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
           + V      E+A+  G+ F+ETSAK A N+ Q F
Sbjct: 127 KVVDYTTAKEFADSLGIPFLETSAKNATNVEQSF 160

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score =  137 bits (346), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 68/154 (44%), Positives = 96/154 (62%), Gaps = 1/154 (0%)
Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           KL+L+GDSGVGKSC++LRF    +  +   T+G  F  +TI L D  T+K +IWDTAGQE
Sbjct: 8   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQE 66
Query: 95  RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
           R+  +   YYRG       YD+T  +SFN  + W++E+ ++ S ++   LVGNK DL  K
Sbjct: 67  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 126
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
           + V      E+A+  G+ F+ETSAK A N+ Q F
Sbjct: 127 KVVDYTTAKEFADSLGIPFLETSAKNATNVEQSF 160

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score =  137 bits (346), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 68/157 (43%), Positives = 97/157 (61%), Gaps = 1/157 (0%)
Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           KL+L+GDSGVGKSC++LRF    +  +   T+G  F  +TI L D  T+K +IWDTAGQE
Sbjct: 27  KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQE 85
Query: 95  RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
           R+  +   YYRG       YD+T  +SFN  + W++E+ ++ S ++   LVGNK DL  K
Sbjct: 86  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 145
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVL 191
           + V      E+A+  G+ F+ETSAK A N+ Q F  +
Sbjct: 146 KVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTM 182

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score =  137 bits (345), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 68/154 (44%), Positives = 96/154 (62%), Gaps = 1/154 (0%)
Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           KL+L+GDSGVGKSC++LRF    +  +   T+G  F  +TI L D  T+K +IWDTAGQE
Sbjct: 35  KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQE 93
Query: 95  RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
           R+  +   YYRG       YD+T  +SFN  + W++E+ ++ S ++   LVGNK DL  K
Sbjct: 94  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 153
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
           + V      E+A+  G+ F+ETSAK A N+ Q F
Sbjct: 154 KVVDYTTAKEFADSLGIPFLETSAKNATNVEQSF 187

>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211

Iteration: 1
 Score =  137 bits (344), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 65/156 (41%), Positives = 99/156 (63%), Gaps = 1/156 (0%)
Query: 33  RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAG 92
           + KLV LG+  VGK+ ++ RF+   FD T + T+G  FLS+T+ L+D T V+ ++WDTAG
Sbjct: 16  KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT-VRLQLWDTAG 74
Query: 93  QERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLH 152
            ER+ +L P Y R        YDIT+ +SF +   W+ +++     D+++ LVGNK DL 
Sbjct: 75  LERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLA 134
Query: 153 EKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
           +KR+V  ++G   A++  + FIETSAK   N+ QLF
Sbjct: 135 DKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLF 170

>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216

Iteration: 1
 Score =  137 bits (344), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 64/156 (41%), Positives = 99/156 (63%), Gaps = 1/156 (0%)
Query: 33  RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAG 92
           + KLV LG+  VGK+ ++ RF+   FD T + T+G  FLS+T+ L+D T ++ ++WDTAG
Sbjct: 13  KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT-IRLQLWDTAG 71
Query: 93  QERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLH 152
            ER+ +L P Y R        YDIT+ +SF +   W+ +++     D+++ LVGNK DL 
Sbjct: 72  LERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLA 131
Query: 153 EKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
           +KR+V  ++G   A++  + FIETSAK   N+ QLF
Sbjct: 132 DKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLF 167

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score =  136 bits (343), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 67/157 (42%), Positives = 97/157 (61%), Gaps = 1/157 (0%)
Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           KL+L+GDSGVGK+C++LRF    +  +   T+G  F  +TI L D  T+K +IWDTAGQE
Sbjct: 18  KLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQE 76
Query: 95  RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
           R+  +   YYRG       YD+T  +SFN  + W++E+ ++ S ++   LVGNK DL  K
Sbjct: 77  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 136
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVL 191
           + V      E+A+  G+ F+ETSAK A N+ Q F  +
Sbjct: 137 KVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTM 173

>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170

Iteration: 1
 Score =  136 bits (343), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 67/158 (42%), Positives = 101/158 (63%), Gaps = 2/158 (1%)
Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           +K++L+GDSGVGKSC+++RFV  +F+P+   T+G  F  +T+ + +   VK +IWDTAGQ
Sbjct: 4   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDI-NGKKVKLQIWDTAGQ 62
Query: 94  ERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE 153
           ER+  +   YYRG       YDIT   +F   + W K + +H + +  + LVGNK+D+ E
Sbjct: 63  ERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-E 121
Query: 154 KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVL 191
            R V A  G   A++ G+ FIE+SAK  DN+N++F  L
Sbjct: 122 TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 159

>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183

Iteration: 1
 Score =  136 bits (342), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 65/157 (41%), Positives = 97/157 (61%), Gaps = 1/157 (0%)
Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           KL+L+GDSGVGK+C++ RF    F+ T   T+G  F  +TI L D   +K +IWDTAGQE
Sbjct: 10  KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIEL-DGKRIKLQIWDTAGQE 68
Query: 95  RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
           R+  +   YYRG       YDIT+  SF+  + W++ +++H S D+   ++GNK D+++K
Sbjct: 69  RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDK 128
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVL 191
           R+V  + G + A   G+ F+ETSAK   N+   F  L
Sbjct: 129 RQVSKERGEKLALDYGIKFMETSAKANINVENAFFTL 165

>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174

Iteration: 1
 Score =  136 bits (342), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 65/157 (41%), Positives = 97/157 (61%), Gaps = 1/157 (0%)
Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           KL+L+GDSGVGK+C++ RF    F+ T   T+G  F  +TI L D   +K +IWDTAGQE
Sbjct: 8   KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIEL-DGKRIKLQIWDTAGQE 66
Query: 95  RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
           R+  +   YYRG       YDIT+  SF+  + W++ +++H S D+   ++GNK D+++K
Sbjct: 67  RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDK 126
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVL 191
           R+V  + G + A   G+ F+ETSAK   N+   F  L
Sbjct: 127 RQVSKERGEKLALDYGIKFMETSAKANINVENAFFTL 163

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score =  135 bits (341), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 65/158 (41%), Positives = 101/158 (63%), Gaps = 2/158 (1%)
Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           +K++L+GDSGVGKSC+++RFV  +F+P+   T+G  F  +T+ + +   VK ++WDTAGQ
Sbjct: 21  MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDI-NGKKVKLQLWDTAGQ 79
Query: 94  ERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE 153
           ER+  +   YYRG       YD+T   +F   + W K + +H + +  + LVGNK+D+ E
Sbjct: 80  ERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-E 138
Query: 154 KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVL 191
            R V A  G   A++ G+ FIE+SAK  DN+N++F  L
Sbjct: 139 TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 176

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score =  134 bits (338), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 65/158 (41%), Positives = 101/158 (63%), Gaps = 2/158 (1%)
Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           +K++L+GDSGVGKSC+++RFV  +F+P+   T+G  F  +T+ + +   VK ++WDTAGQ
Sbjct: 8   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDI-NGKKVKLQLWDTAGQ 66
Query: 94  ERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE 153
           ER+  +   YYRG       YD+T   +F   + W K + +H + +  + LVGNK+D+ E
Sbjct: 67  ERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-E 125
Query: 154 KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVL 191
            R V A  G   A++ G+ FIE+SAK  DN+N++F  L
Sbjct: 126 TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 163

>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170

Iteration: 1
 Score =  134 bits (338), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 68/157 (43%), Positives = 100/157 (63%), Gaps = 2/157 (1%)
Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           K++L+GDSGVGKSC+++RFV  +F+P+   T+G  F  +T+ + +   VK +IWDTAGQE
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDI-NGKKVKLQIWDTAGQE 63
Query: 95  RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
           R+  +   YYRG       YDIT   +F   + W K + +H + +  + LVGNK+D  E 
Sbjct: 64  RFRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD-XET 122
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVL 191
           R V A  G   A++ G+ FIE+SAK  DN+N++F  L
Sbjct: 123 RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 159

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score =  134 bits (337), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 66/157 (42%), Positives = 97/157 (61%), Gaps = 1/157 (0%)
Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           KL+L+GDSGVGKSC++LRF    +  +   T+G  F  +TI L D  T+K +IWDTAGQE
Sbjct: 11  KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQE 69
Query: 95  RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
           R+  +   YYRG       YD+T  +S+   + W++E+ ++ S ++   LVGNK+DL  K
Sbjct: 70  RFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTK 129
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVL 191
           + V      E+A+  G+ F+ETSAK A N+ Q F  +
Sbjct: 130 KVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTM 166

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score =  134 bits (337), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 66/154 (42%), Positives = 96/154 (62%), Gaps = 1/154 (0%)
Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           KL+L+GDSGVGKSC++LRF    +  +   T+G  F  +TI L D  T+K +IWDTAGQE
Sbjct: 11  KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQE 69
Query: 95  RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
           R+  +   YYRG       YD+T  +S+   + W++E+ ++ S ++   LVGNK+DL  K
Sbjct: 70  RFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTK 129
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
           + V      E+A+  G+ F+ETSAK A N+ Q F
Sbjct: 130 KVVDNTTAKEFADSLGIPFLETSAKNATNVEQAF 163

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score =  134 bits (337), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 69/154 (44%), Positives = 92/154 (59%), Gaps = 1/154 (0%)
Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           K+VLLG+  VGK+ +VLR+   +F+     T+GASFL++ + +     V   IWDTAGQE
Sbjct: 8   KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNI-GGKRVNLAIWDTAGQE 66
Query: 95  RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
           R+ AL P+YYR        YDIT  DSF K + WVKEL+K    +I + +VGNK DL ++
Sbjct: 67  RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKE 126
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
           R V  Q+   YAE  G     TSAK    I +LF
Sbjct: 127 RHVSIQEAESYAESVGAKHYHTSAKQNKGIEELF 160

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score =  134 bits (336), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 67/157 (42%), Positives = 96/157 (61%), Gaps = 1/157 (0%)
Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           KL+L+GDSGVGKSC++LRF    +  +   T+G  F  +TI L D  T+K +IWDTAGQE
Sbjct: 10  KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQE 68
Query: 95  RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
           R+  +   YYRG       YD+T  +SFN  + W++E+ ++ S ++   LVG K DL  K
Sbjct: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGIKCDLTTK 128
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVL 191
           + V      E+A+  G+ F+ETSAK A N+ Q F  +
Sbjct: 129 KVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTM 165

>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206

Iteration: 1
 Score =  133 bits (334), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 65/154 (42%), Positives = 94/154 (61%), Gaps = 1/154 (0%)
Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           KL+L+G+SGVGKSC++LRF    +      T+G  F  +T+ L D  TVK +IWDTAGQE
Sbjct: 10  KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVEL-DGKTVKLQIWDTAGQE 68
Query: 95  RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
           R+  +   YYRG       YD+T  +SFN  + W++E+ ++ +  ++  LVGNK DL +K
Sbjct: 69  RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDK 128
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
           R V      E+A+ N M F+ETSA  + N+   F
Sbjct: 129 RVVEYDVAKEFADANKMPFLETSALDSTNVEDAF 162

>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206

Iteration: 1
 Score =  133 bits (334), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 65/154 (42%), Positives = 94/154 (61%), Gaps = 1/154 (0%)
Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           KL+L+G+SGVGKSC++LRF    +      T+G  F  +T+ L D  TVK +IWDTAGQE
Sbjct: 10  KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVEL-DGKTVKLQIWDTAGQE 68
Query: 95  RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
           R+  +   YYRG       YD+T  +SFN  + W++E+ ++ +  ++  LVGNK DL +K
Sbjct: 69  RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDK 128
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
           R V      E+A+ N M F+ETSA  + N+   F
Sbjct: 129 RVVEYDVAKEFADANKMPFLETSALDSTNVEDAF 162

>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170

Iteration: 1
 Score =  132 bits (333), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 66/157 (42%), Positives = 100/157 (63%), Gaps = 2/157 (1%)
Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           K++L+GDSGVGKSC+++RFV  +F+P+   T+G  F  +T+ + +   VK ++WDTAGQE
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDI-NGKKVKLQLWDTAGQE 63
Query: 95  RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
           R+  +   YYRG       YD+T   +F   + W K + +H + +  + LVGNK+D  E 
Sbjct: 64  RFRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD-XET 122
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVL 191
           R V A  G   A++ G+ FIE+SAK  DN+N++F  L
Sbjct: 123 RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 159

>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185

Iteration: 1
 Score =  132 bits (331), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 65/154 (42%), Positives = 94/154 (61%), Gaps = 1/154 (0%)
Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           KL+L+G+SGVGKSC++LRF    +      T+G  F  +T+ L D  TVK +IWDTAGQE
Sbjct: 23  KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVEL-DGKTVKLQIWDTAGQE 81
Query: 95  RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
           R+  +   YYRG       YD+T  +SFN  + W++E+ ++ +  ++  LVGNK DL +K
Sbjct: 82  RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDK 141
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
           R V      E+A+ N M F+ETSA  + N+   F
Sbjct: 142 RVVEYDVAKEFADANKMPFLETSALDSTNVEDAF 175

>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170

Iteration: 1
 Score =  131 bits (329), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 68/154 (44%), Positives = 91/154 (59%), Gaps = 1/154 (0%)
Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           K+VLLG+  VGK+ +VLR+   +F+     T+ ASFL++ + +     V   IWDTAGQE
Sbjct: 8   KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNI-GGKRVNLAIWDTAGQE 66
Query: 95  RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
           R+ AL P+YYR        YDIT  DSF K + WVKEL+K    +I + +VGNK DL ++
Sbjct: 67  RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKE 126
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
           R V  Q+   YAE  G     TSAK    I +LF
Sbjct: 127 RHVSIQEAESYAESVGAKHYHTSAKQNKGIEELF 160

>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184

Iteration: 1
 Score =  130 bits (328), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 68/154 (44%), Positives = 91/154 (59%), Gaps = 1/154 (0%)
Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           K+VLLG+  VGK+ +VLR+   +F+     T+ ASFL++ + +     V   IWDTAGQE
Sbjct: 22  KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNI-GGKRVNLAIWDTAGQE 80
Query: 95  RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
           R+ AL P+YYR        YDIT  DSF K + WVKEL+K    +I + +VGNK DL ++
Sbjct: 81  RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKE 140
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
           R V  Q+   YAE  G     TSAK    I +LF
Sbjct: 141 RHVSIQEAESYAESVGAKHYHTSAKQNKGIEELF 174

>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179

Iteration: 1
 Score =  128 bits (321), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 59/154 (38%), Positives = 94/154 (61%), Gaps = 1/154 (0%)
Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           K +++GD GVGKSC++ +F   +F      T+G  F ++ I +     +K +IWDTAGQE
Sbjct: 17  KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEV-SGQKIKLQIWDTAGQE 75
Query: 95  RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
           R+ A+   YYRG       YDIT   ++N    W+ + +   +P+ V+ L+GNKADL  +
Sbjct: 76  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQ 135
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
           R+V  ++  ++AE+NG+ F+E SAKT +N+   F
Sbjct: 136 RDVTYEEAKQFAEENGLLFLEASAKTGENVEDAF 169

>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162

Iteration: 1
 Score =  127 bits (320), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 64/157 (40%), Positives = 93/157 (59%), Gaps = 1/157 (0%)
Query: 33  RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAG 92
           + KLV LG+  VGK+ I+ RF    FD   + T+G  FLS+T+ L D   V+ ++WDTAG
Sbjct: 1   KYKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYL-DEGPVRLQLWDTAG 59
Query: 93  QERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLH 152
           QER+ +L P Y R        YDIT+  SF     W++++      D+++ALVGNK DL 
Sbjct: 60  QERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLG 119
Query: 153 EKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFE 189
           + R+V  ++G + A++    F ETSAK   NI  LF+
Sbjct: 120 DLRKVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLFK 156

>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200

Iteration: 1
 Score =  127 bits (318), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 60/154 (38%), Positives = 95/154 (61%), Gaps = 1/154 (0%)
Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           K +++G +G GKSC++ +F+  +F   S  T+G  F S+ + +    TVK +IWDTAGQE
Sbjct: 27  KFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNV-GGKTVKLQIWDTAGQE 85
Query: 95  RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
           R+ ++   YYRG       YDITS +++N    W+ + +   SP+IV+ L GNK DL  +
Sbjct: 86  RFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPE 145
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
           REV   +   +A++N + F+ETSA T +N+ + F
Sbjct: 146 REVTFLEASRFAQENELMFLETSALTGENVEEAF 179

>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196

Iteration: 1
 Score =  125 bits (314), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 58/154 (37%), Positives = 93/154 (60%), Gaps = 1/154 (0%)
Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           K +++GD GVGKSC++ +F   +F      T+G  F ++ I +     +K +IWDTAGQ 
Sbjct: 32  KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEV-SGQKIKLQIWDTAGQG 90
Query: 95  RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
           R+ A+   YYRG       YDIT   ++N    W+ + +   +P+ V+ L+GNKADL  +
Sbjct: 91  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQ 150
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
           R+V  ++  ++AE+NG+ F+E SAKT +N+   F
Sbjct: 151 RDVTYEEAKQFAEENGLLFLEASAKTGENVEDAF 184

>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189

Iteration: 1
 Score =  125 bits (313), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 64/158 (40%), Positives = 90/158 (56%), Gaps = 1/158 (0%)
Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           KL+L+G+S VGK+  + R+    F P    TVG  F  +T+   D   +K +IWDTAGQE
Sbjct: 24  KLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKR-IKLQIWDTAGQE 82
Query: 95  RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
           RY  +   YYRG       YDI + +SF   Q W  +++ +   +  + LVGNK DL ++
Sbjct: 83  RYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDE 142
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
           R VPA+DG   A+  G  F E SAK   N+ Q+FE L+
Sbjct: 143 RVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLV 180

>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191

Iteration: 1
 Score =  124 bits (312), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 69/178 (38%), Positives = 97/178 (54%), Gaps = 4/178 (2%)
Query: 15  SGGLNNLENAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQT 74
           S G  NL   G+ D      KL+++G+S VGK+  + R+    F P    TVG  F  +T
Sbjct: 8   SSGRENLYFQGNFD---YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKT 64
Query: 75  IALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQK 134
           +   +   VK +IWDTAGQERY  +   YYRG       YDIT+ +SFN  Q W  +++ 
Sbjct: 65  VYRHEKR-VKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKT 123
Query: 135 HGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
           +   +  + LVGNK D+ E+R VP + G   AE+ G  F E SAK   ++ Q FE L+
Sbjct: 124 YSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLV 181

>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score =  124 bits (311), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 62/162 (38%), Positives = 101/162 (62%), Gaps = 2/162 (1%)
Query: 28  DAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKV-TVGASFLSQTIALQDSTTVKFE 86
           D  ++  K++L+GDSGVGK+C+++RF  G F   + + TVG  F ++ + + D   VK +
Sbjct: 5   DFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDV-DGVKVKLQ 63
Query: 87  IWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVG 146
           +WDTAGQER+ ++   YYR        YD+T+  SF+  Q W+ E+ ++   D+ + L+G
Sbjct: 64  MWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLG 123
Query: 147 NKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
           NK D   +R V  +DG + A++ G+ F+ETSAKT  N++  F
Sbjct: 124 NKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAF 165

>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201

Iteration: 1
 Score =  123 bits (309), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 64/155 (41%), Positives = 90/155 (58%), Gaps = 2/155 (1%)
Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           KLVL+GD+ VGK+C+V RF  G F      T+G  F  +T+ +Q    VK +IWDTAGQE
Sbjct: 31  KLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQ-GKRVKLQIWDTAGQE 89
Query: 95  RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
           R+  +   YYR        YDIT   SF    +W+++++K+   +IV  L+GNK+DL E 
Sbjct: 90  RFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSEL 149
Query: 155 REVPAQDGIEYAEKNGMF-FIETSAKTADNINQLF 188
           REV   +    AE   +   IETSAK + N+ + F
Sbjct: 150 REVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAF 184

>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186

Iteration: 1
 Score =  122 bits (307), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 60/162 (37%), Positives = 96/162 (59%), Gaps = 1/162 (0%)
Query: 27  SDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFE 86
           S+  +   K +++G++G GKSC++ +F+  +F   S  T+G  F S+ I +     VK +
Sbjct: 4   SETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINV-GGKYVKLQ 62
Query: 87  IWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVG 146
           IWDTAGQER+ ++   YYRG       YDITS +++N    W+ + +   S +IV+ L G
Sbjct: 63  IWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCG 122
Query: 147 NKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
           NK DL   REV   +   +A++N + F+ETSA T +N+ + F
Sbjct: 123 NKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAF 164

>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum, Pfb0500c Length = 208

Iteration: 1
 Score =  122 bits (305), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 68/193 (35%), Positives = 101/193 (52%), Gaps = 39/193 (20%)
Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIAL----------------- 77
           K VLLG+S VGKS IVLR  +  F   +  T+GASF +  + L                 
Sbjct: 9   KTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNI 68
Query: 78  -------------------QDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITS 118
                              ++   +KF+IWDTAGQERYA++ PLYYRG       +DI++
Sbjct: 69  NSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISN 128
Query: 119 PDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSA 178
            ++ ++A+ WV +L+   S + ++ LV NK D   K +V   +  +YA+ N + FI+TSA
Sbjct: 129 SNTLDRAKTWVNQLKI--SSNYIIILVANKID-KNKFQVDILEVQKYAQDNNLLFIQTSA 185
Query: 179 KTADNINQLFEVL 191
           KT  NI  +F +L
Sbjct: 186 KTGTNIKNIFYML 198

>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175

Iteration: 1
 Score =  120 bits (301), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 59/162 (36%), Positives = 96/162 (59%), Gaps = 1/162 (0%)
Query: 27  SDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFE 86
           S+  +   K +++G++G GKSC++ +F+  +F   S  T+G  F S+ I +     VK +
Sbjct: 5   SETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINV-GGKYVKLQ 63
Query: 87  IWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVG 146
           IWDTAGQER+ ++   YYRG       YDITS +++N    W+ + +   S +IV+ L G
Sbjct: 64  IWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCG 123
Query: 147 NKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
           NK DL   REV   +   +A++N + F+ETSA T +++ + F
Sbjct: 124 NKKDLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAF 165

>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169

Iteration: 1
 Score =  119 bits (299), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 61/158 (38%), Positives = 90/158 (56%), Gaps = 1/158 (0%)
Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           K++++G+S VGK+  + R+    F P    TVG  F  +TI   D   +K +IWDTAGQE
Sbjct: 7   KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKR-IKLQIWDTAGQE 65
Query: 95  RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
           RY  +   YYRG       YDIT+ +SFN  Q W  +++ +   +  + LVGNK D+ ++
Sbjct: 66  RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDE 125
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
           R V ++ G + A+  G  F E SAK   N+ Q FE L+
Sbjct: 126 RVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLV 163

>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181

Iteration: 1
 Score =  119 bits (298), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 60/157 (38%), Positives = 93/157 (59%), Gaps = 2/157 (1%)
Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           KL+++GDSGVGKS ++LRF    F  +   T+G  F  +T+ + +   VK +IWDTAGQE
Sbjct: 11  KLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEI-NGEKVKLQIWDTAGQE 69
Query: 95  RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
           R+  +   YYRG       YD+TS +SF   + W+ E+ ++   D+   LVGNK D  E+
Sbjct: 70  RFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQN-CDDVCRILVGNKNDDPER 128
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVL 191
           + V  +D  ++A + G+   ETSAK   N+ ++F  +
Sbjct: 129 KVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCI 165

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score =  118 bits (296), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 60/169 (35%), Positives = 97/169 (57%), Gaps = 2/169 (1%)
Query: 25  GSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVK 84
           GS    + +++++++G  GVGK+ ++ RF    F    K TVG  F  +T+ L+    ++
Sbjct: 18  GSPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELR-GKKIR 76
Query: 85  FEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMAL 144
            +IWDTAGQER+ ++   YYR        YDIT  ++F+    W+K + K+ S D  + L
Sbjct: 77  LQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLL 136
Query: 145 VGNKADLHEKREVPAQDGIEYAEK-NGMFFIETSAKTADNINQLFEVLI 192
           VGNK D    RE+  Q G ++A++  GM F E SAK   N++++F  L+
Sbjct: 137 VGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLV 185

>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172

Iteration: 1
 Score =  117 bits (294), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 58/162 (35%), Positives = 95/162 (58%), Gaps = 1/162 (0%)
Query: 27  SDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFE 86
           S+  +   K +++G++G GKSC++ +F+  +F   S  T+G  F S+ I +     VK +
Sbjct: 2   SETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINV-GGKYVKLQ 60
Query: 87  IWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVG 146
           IWDTAG ER+ ++   YYRG       YDITS +++N    W+ + +   S +IV+ L G
Sbjct: 61  IWDTAGLERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCG 120
Query: 147 NKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
           NK DL   REV   +   +A++N + F+ETSA T +++ + F
Sbjct: 121 NKKDLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAF 162

>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217

Iteration: 1
 Score =  114 bits (286), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 66/180 (36%), Positives = 99/180 (55%), Gaps = 15/180 (8%)
Query: 25  GSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQ------ 78
           GS D   L +KL+ LGDSGVGK+  + R+   +F+P    TVG  F  + +         
Sbjct: 18  GSGDYDYL-IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNG 76
Query: 79  ---DSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKH 135
               +  V  ++WDTAGQER+ +L   ++R        +D+TS  SF   + W+ +LQ +
Sbjct: 77  SSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQAN 136
Query: 136 G---SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
               +PDIV  L+GNKADL ++REV  +   E A+K G+ + ETSA T  N+ +  E L+
Sbjct: 137 AYCENPDIV--LIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLL 194

>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203

Iteration: 1
 Score =  114 bits (285), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 62/158 (39%), Positives = 90/158 (56%), Gaps = 1/158 (0%)
Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           K++++G+S VGK+  + R+    F P    TVG  F  +TI   D   +K +IWDTAG E
Sbjct: 10  KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKR-IKLQIWDTAGLE 68
Query: 95  RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
           RY  +   YYRG       YDIT+ +SFN  Q W  +++ +   +  + LVGNK D  ++
Sbjct: 69  RYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDXEDE 128
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
           R V ++ G + A+  G  F E SAK   N+ Q FE L+
Sbjct: 129 RVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLV 166

>pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117

Iteration: 1
 Score =  112 bits (280), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 52/116 (44%), Positives = 74/116 (63%), Gaps = 1/116 (0%)
Query: 36  LVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQER 95
           L+L+GDSGVGKSC++LRF    +  +   T+G  F  +TI L D  T+K +IWDTAGQER
Sbjct: 1   LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQER 59
Query: 96  YAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADL 151
           +  +   YYRG       YD+T  +SFN  + W++E+ ++ S ++   LVGNK DL
Sbjct: 60  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 115

>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220

Iteration: 1
 Score =  112 bits (279), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 63/171 (36%), Positives = 95/171 (55%), Gaps = 14/171 (8%)
Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTI---------ALQDSTTVK 84
           +KL+ LGDSGVGK+  + R+   +F+P    TVG  F  + +         A   +  V 
Sbjct: 12  IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVH 71
Query: 85  FEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHG---SPDIV 141
            ++WDTAG ER+ +L   ++R        +D+TS  SF   + W+ +LQ +    +PDIV
Sbjct: 72  LQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 131
Query: 142 MALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
             L+GNKADL ++REV  +   E AEK G+ + ETSA T  N+ +  E L+
Sbjct: 132 --LIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLL 180

>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200

Iteration: 1
 Score =  111 bits (278), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 62/171 (36%), Positives = 94/171 (54%), Gaps = 14/171 (8%)
Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQ---------DSTTVK 84
           +KL+ LGDSGVGK+  + R+   +F+P    TVG  F  + +             +  V 
Sbjct: 12  IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVH 71
Query: 85  FEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHG---SPDIV 141
            ++WDTAG ER+ +L   ++R        +D+TS  SF   + W+ +LQ +    +PDIV
Sbjct: 72  LQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 131
Query: 142 MALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
             L+GNKADL ++REV  +   E AEK G+ + ETSA T  N+ +  E L+
Sbjct: 132 --LIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLL 180

>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207

Iteration: 1
 Score =  111 bits (277), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 60/167 (35%), Positives = 96/167 (57%), Gaps = 7/167 (4%)
Query: 30  KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWD 89
           K + +K+++LGDSGVGK+ ++ ++V  +F    K T+GA FL++ + + D   V  +IWD
Sbjct: 5   KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRL-VTMQIWD 63
Query: 90  TAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSP----DIVMALV 145
           TAGQER+ +L   +YRG       +D+T+P++F     W  E     SP    +    ++
Sbjct: 64  TAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVL 123
Query: 146 GNKADLHEKREVPAQDGIEYA-EKNGMFFIETSAKTADNINQLFEVL 191
           GNK DL E R+V  +    +   KN + + ETSAK A N+ Q F+ +
Sbjct: 124 GNKIDL-ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 169

>pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185

Iteration: 1
 Score =  111 bits (277), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 60/167 (35%), Positives = 96/167 (57%), Gaps = 7/167 (4%)
Query: 30  KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWD 89
           K + +K+++LGDSGVGK+ ++ ++V  +F    K T+GA FL++ + + D   V  +IWD
Sbjct: 5   KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRL-VTMQIWD 63
Query: 90  TAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSP----DIVMALV 145
           TAGQER+ +L   +YRG       +D+T+P++F     W  E     SP    +    ++
Sbjct: 64  TAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVL 123
Query: 146 GNKADLHEKREVPAQDGIEYA-EKNGMFFIETSAKTADNINQLFEVL 191
           GNK DL E R+V  +    +   KN + + ETSAK A N+ Q F+ +
Sbjct: 124 GNKIDL-ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 169

>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203

Iteration: 1
 Score =  110 bits (274), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 65/171 (38%), Positives = 96/171 (56%), Gaps = 14/171 (8%)
Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTI---------ALQDSTTVK 84
           +KL+ LGDSGVGK+  + R+   +F+P    TVG  F  + +         A   +  V 
Sbjct: 12  IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVH 71
Query: 85  FEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHG---SPDIV 141
            ++WDTAG ER+ +L   ++R        +D+TS  SF   + W  +LQ +    +PDIV
Sbjct: 72  LQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIV 131
Query: 142 MALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
             L+GNKADL ++REV  +   E AEK G+ + ETSA T  N+ +  E L+
Sbjct: 132 --LIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLL 180

>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195

Iteration: 1
 Score =  110 bits (274), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 64/171 (37%), Positives = 95/171 (55%), Gaps = 14/171 (8%)
Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQ---------DSTTVK 84
           +KL+ LGDSGVGK+  + R+   +F+P    TVG  F  + +             +  V 
Sbjct: 12  IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVH 71
Query: 85  FEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHG---SPDIV 141
            ++WDTAG ER+ +L   ++R        +D+TS  SF   + W  +LQ +    +PDIV
Sbjct: 72  LQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIV 131
Query: 142 MALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
             L+GNKADL ++REV  +   E AEK G+ + ETSA T  N+ +  E L+
Sbjct: 132 --LIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLL 180

>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207

Iteration: 1
 Score =  110 bits (274), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 59/167 (35%), Positives = 95/167 (56%), Gaps = 7/167 (4%)
Query: 30  KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWD 89
           K + +K+++LGDSGVGK+ ++ ++V  +F    K T+GA FL++ + + D   V  +IWD
Sbjct: 5   KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRL-VTMQIWD 63
Query: 90  TAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSP----DIVMALV 145
           TAGQER+ +L   +YRG       +D+T+P++F     W  E     SP    +    ++
Sbjct: 64  TAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVL 123
Query: 146 GNKADLHEKREVPAQDGIEYA-EKNGMFFIETSAKTADNINQLFEVL 191
           GNK D  E R+V  +    +   KN + + ETSAK A N+ Q F+ +
Sbjct: 124 GNKIDF-ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 169

>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189

Iteration: 1
 Score =  109 bits (273), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 55/161 (34%), Positives = 93/161 (57%), Gaps = 3/161 (1%)
Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           K++++GDS VGK+C+  RF  G+F   ++ T+G  F  + + + D   +K ++WDTAGQE
Sbjct: 22  KIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDI-DGERIKIQLWDTAGQE 80
Query: 95  RY-AALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLH 152
           R+  ++   YYR        YD+T+  SF+    W++E ++H  + DI   LVGNK DL 
Sbjct: 81  RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR 140
Query: 153 EKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT 193
              +VP     ++A+ + M   ETSAK  ++ + +  + +T
Sbjct: 141 SAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMT 181

>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207

Iteration: 1
 Score =  108 bits (270), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 59/167 (35%), Positives = 95/167 (56%), Gaps = 7/167 (4%)
Query: 30  KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWD 89
           K + +K+++LGDSGVGK+ ++ ++V  +F    K T+GA FL++ + + D   V  +IWD
Sbjct: 5   KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRL-VTMQIWD 63
Query: 90  TAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSP----DIVMALV 145
           TAG ER+ +L   +YRG       +D+T+P++F     W  E     SP    +    ++
Sbjct: 64  TAGLERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVL 123
Query: 146 GNKADLHEKREVPAQDGIEYA-EKNGMFFIETSAKTADNINQLFEVL 191
           GNK DL E R+V  +    +   KN + + ETSAK A N+ Q F+ +
Sbjct: 124 GNKIDL-ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 169

>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195

Iteration: 1
 Score =  108 bits (269), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 58/171 (33%), Positives = 94/171 (54%), Gaps = 14/171 (8%)
Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTI---------ALQDSTTVK 84
           +K + LGDSGVGK+ ++ ++  G+F+     TVG  F  + +         A+     + 
Sbjct: 12  IKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIH 71
Query: 85  FEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHG---SPDIV 141
            ++WDTAG ER+ +L   ++R        +D+T+  SF   + W+ +LQ H    +PDIV
Sbjct: 72  LQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIV 131
Query: 142 MALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
             L GNK+DL ++R V  ++  E AEK G+ + ETSA    NI+   E+L+
Sbjct: 132 --LCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLL 180

>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198

Iteration: 1
 Score =  107 bits (266), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 62/185 (33%), Positives = 98/185 (52%), Gaps = 14/185 (7%)
Query: 12  SGQSGGLNNLENAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFL 71
           SG SG L          A++   K++++GDS VGK+C+  RF  G+F   ++ T+G  F 
Sbjct: 16  SGASGCL--------PPARSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFR 67
Query: 72  SQTIALQDSTTVKFEIWDTAGQERY-AALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVK 130
            + + + D   +K ++WDTAGQER+  ++   YYR        YD T+  SF+    W++
Sbjct: 68  ERAVDI-DGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIE 126
Query: 131 ELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTA---DNINQ 186
           E ++H  + DI   LVGNK DL    +VP     ++A+ +     ETSAK     D++  
Sbjct: 127 ECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSXPLFETSAKNPNDNDHVEA 186
Query: 187 LFEVL 191
           +F  L
Sbjct: 187 IFXTL 191

>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182

Iteration: 1
 Score =  103 bits (258), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 57/170 (33%), Positives = 94/170 (55%), Gaps = 7/170 (4%)
Query: 26  SSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKF 85
           SS  KN+ +K+++LGDSGVGK+ ++ R+V  ++    K T+GA FL++ + +        
Sbjct: 2   SSRKKNI-LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATM 60
Query: 86  EIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHG---SPDIV- 141
           ++WDTAGQER+ +L   +YRG       YD+T+  SF   + W  E   H    SP+   
Sbjct: 61  QVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFP 120
Query: 142 MALVGNKADLHEKREVPAQDGIEYAEKN--GMFFIETSAKTADNINQLFE 189
             ++GNK D  E +++ ++   +   K+   +    TSAK A N++  FE
Sbjct: 121 FVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFE 170

>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex With Rhogdi In Its Active Gppnhp-Bound Form Length = 195

Iteration: 1
 Score =  101 bits (251), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 62/173 (35%), Positives = 93/173 (53%), Gaps = 17/173 (9%)
Query: 32  LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTA 91
           +R KLV++GD   GK+C+++ F + QF      TV  ++++      D   V+  +WDTA
Sbjct: 6   IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEV--DGKQVELALWDTA 63
Query: 92  GQERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKAD 150
           GQE Y  L PL Y         + I SPDS  N  + W  E+ KH  P++ + LVGNK D
Sbjct: 64  GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKD 122
Query: 151 L----HEKRE--------VPAQDGIEYAEKNGMF-FIETSAKTADNINQLFEV 190
           L    H +RE        V  ++G + A + G F ++E SAKT D + ++FE+
Sbjct: 123 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEM 175

>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex Length = 193

Iteration: 1
 Score =  101 bits (251), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 62/173 (35%), Positives = 93/173 (53%), Gaps = 17/173 (9%)
Query: 32  LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTA 91
           +R KLV++GD   GK+C+++ F + QF      TV  ++++      D   V+  +WDTA
Sbjct: 4   IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEV--DGKQVELALWDTA 61
Query: 92  GQERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKAD 150
           GQE Y  L PL Y         + I SPDS  N  + W  E+ KH  P++ + LVGNK D
Sbjct: 62  GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKD 120
Query: 151 L----HEKRE--------VPAQDGIEYAEKNGMF-FIETSAKTADNINQLFEV 190
           L    H +RE        V  ++G + A + G F ++E SAKT D + ++FE+
Sbjct: 121 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEM 173

>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-Associated Rhogef In Complex With Rhoa Length = 196

Iteration: 1
 Score =  100 bits (250), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 62/173 (35%), Positives = 93/173 (53%), Gaps = 17/173 (9%)
Query: 32  LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTA 91
           +R KLV++GD   GK+C+++ F + QF      TV  ++++      D   V+  +WDTA
Sbjct: 7   IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEV--DGKQVELALWDTA 64
Query: 92  GQERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKAD 150
           GQE Y  L PL Y         + I SPDS  N  + W  E+ KH  P++ + LVGNK D
Sbjct: 65  GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKD 123
Query: 151 L----HEKRE--------VPAQDGIEYAEKNGMF-FIETSAKTADNINQLFEV 190
           L    H +RE        V  ++G + A + G F ++E SAKT D + ++FE+
Sbjct: 124 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEM 176

>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa And Rho-Binding Domain Of Human Rocki Length = 183

Iteration: 1
 Score =  100 bits (250), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 62/173 (35%), Positives = 93/173 (53%), Gaps = 17/173 (9%)
Query: 32  LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTA 91
           +R KLV++GD   GK+C+++ F + QF      TV  ++++      D   V+  +WDTA
Sbjct: 6   IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEV--DGKQVELALWDTA 63
Query: 92  GQERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKAD 150
           GQE Y  L PL Y         + I SPDS  N  + W  E+ KH  P++ + LVGNK D
Sbjct: 64  GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKD 122
Query: 151 L----HEKRE--------VPAQDGIEYAEKNGMF-FIETSAKTADNINQLFEV 190
           L    H +RE        V  ++G + A + G F ++E SAKT D + ++FE+
Sbjct: 123 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEM 175

>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+ (Complex A) Length = 185

Iteration: 1
 Score =  100 bits (250), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 62/173 (35%), Positives = 93/173 (53%), Gaps = 17/173 (9%)
Query: 32  LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTA 91
           +R KLV++GD   GK+C+++ F + QF      TV  ++++      D   V+  +WDTA
Sbjct: 8   IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEV--DGKQVELALWDTA 65
Query: 92  GQERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKAD 150
           GQE Y  L PL Y         + I SPDS  N  + W  E+ KH  P++ + LVGNK D
Sbjct: 66  GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKD 124
Query: 151 L----HEKRE--------VPAQDGIEYAEKNGMF-FIETSAKTADNINQLFEV 190
           L    H +RE        V  ++G + A + G F ++E SAKT D + ++FE+
Sbjct: 125 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEM 177

>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH DOMAINS WITH GTP- Gamma-S Activated Rhoa Length = 182

Iteration: 1
 Score =  100 bits (250), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 62/173 (35%), Positives = 93/173 (53%), Gaps = 17/173 (9%)
Query: 32  LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTA 91
           +R KLV++GD   GK+C+++ F + QF      TV  ++++      D   V+  +WDTA
Sbjct: 5   IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEV--DGKQVELALWDTA 62
Query: 92  GQERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKAD 150
           GQE Y  L PL Y         + I SPDS  N  + W  E+ KH  P++ + LVGNK D
Sbjct: 63  GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKD 121
Query: 151 L----HEKRE--------VPAQDGIEYAEKNGMF-FIETSAKTADNINQLFEV 190
           L    H +RE        V  ++G + A + G F ++E SAKT D + ++FE+
Sbjct: 122 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEM 174

>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology Domains Of Dbs In Complex With Rhoa Length = 192

Iteration: 1
 Score =  100 bits (250), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 62/173 (35%), Positives = 93/173 (53%), Gaps = 17/173 (9%)
Query: 32  LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTA 91
           +R KLV++GD   GK+C+++ F + QF      TV  ++++      D   V+  +WDTA
Sbjct: 6   IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEV--DGKQVELALWDTA 63
Query: 92  GQERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKAD 150
           GQE Y  L PL Y         + I SPDS  N  + W  E+ KH  P++ + LVGNK D
Sbjct: 64  GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKD 122
Query: 151 L----HEKRE--------VPAQDGIEYAEKNGMF-FIETSAKTADNINQLFEV 190
           L    H +RE        V  ++G + A + G F ++E SAKT D + ++FE+
Sbjct: 123 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEM 175

>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The Effector Domain Of The Protein Kinase PknPRK1 Length = 182

Iteration: 1
 Score =  100 bits (250), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 62/173 (35%), Positives = 93/173 (53%), Gaps = 17/173 (9%)
Query: 32  LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTA 91
           +R KLV++GD   GK+C+++ F + QF      TV  ++++      D   V+  +WDTA
Sbjct: 5   IRKKLVIVGDVACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEV--DGKQVELALWDTA 62
Query: 92  GQERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKAD 150
           GQE Y  L PL Y         + I SPDS  N  + W  E+ KH  P++ + LVGNK D
Sbjct: 63  GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKD 121
Query: 151 L----HEKRE--------VPAQDGIEYAEKNGMF-FIETSAKTADNINQLFEV 190
           L    H +RE        V  ++G + A + G F ++E SAKT D + ++FE+
Sbjct: 122 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEM 174

>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199

Iteration: 1
 Score =  100 bits (249), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 55/156 (35%), Positives = 82/156 (52%), Gaps = 7/156 (4%)
Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           K+VL GD+ VGKS  ++R  + +F      T+G  F  +T+ +    TV  ++WDTAGQE
Sbjct: 30  KIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTV-LQLWDTAGQE 88
Query: 95  RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE- 153
           R+ ++A  Y+R        YD+T   SF   + WV  ++      + + LVGNKAD+ + 
Sbjct: 89  RFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDT 148
Query: 154 -----KREVPAQDGIEYAEKNGMFFIETSAKTADNI 184
                ++ VP   G + A   G  F ETSAK   NI
Sbjct: 149 AATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNI 184

>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 193

Iteration: 1
 Score = 97.8 bits (242), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 61/173 (35%), Positives = 92/173 (53%), Gaps = 17/173 (9%)
Query: 32  LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTA 91
           +R KLV++GD   GK+C+++   + QF      TV  ++++      D   V+  +WDTA
Sbjct: 4   IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEV--DGKQVELALWDTA 61
Query: 92  GQERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKAD 150
           GQE Y  L PL Y         + I SPDS  N  + W  E+ KH  P++ + LVGNK D
Sbjct: 62  GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKD 120
Query: 151 L----HEKRE--------VPAQDGIEYAEKNGMF-FIETSAKTADNINQLFEV 190
           L    H +RE        V  ++G + A + G F ++E SAKT D + ++FE+
Sbjct: 121 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEM 173

>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Length = 190

Iteration: 1
 Score = 97.4 bits (241), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 61/173 (35%), Positives = 92/173 (53%), Gaps = 17/173 (9%)
Query: 32  LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTA 91
           +R KLV++GD   GK+C+++   + QF      TV  ++++      D   V+  +WDTA
Sbjct: 4   IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEV--DGKQVELALWDTA 61
Query: 92  GQERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKAD 150
           GQE Y  L PL Y         + I SPDS  N  + W  E+ KH  P++ + LVGNK D
Sbjct: 62  GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKD 120
Query: 151 L----HEKRE--------VPAQDGIEYAEKNGMF-FIETSAKTADNINQLFEV 190
           L    H +RE        V  ++G + A + G F ++E SAKT D + ++FE+
Sbjct: 121 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEM 173

>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex Length = 201

Iteration: 1
 Score = 97.4 bits (241), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 60/173 (34%), Positives = 93/173 (53%), Gaps = 17/173 (9%)
Query: 32  LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTA 91
           +R KLV++GD   GK+C+++ F + QF      TV  ++++      D   V+  +WDTA
Sbjct: 24  IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEV--DGKQVELALWDTA 81
Query: 92  GQERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKAD 150
           GQE Y  L PL Y         + I SPDS  N  + W  E+ KH  P++ + LVGNK D
Sbjct: 82  GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKD 140
Query: 151 L----HEKRE--------VPAQDGIEYAEKNGMF-FIETSAKTADNINQLFEV 190
           L    H +RE        V +++G + A +   F ++E SAKT + + ++FE+
Sbjct: 141 LRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEM 193

>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 180

Iteration: 1
 Score = 97.4 bits (241), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 61/173 (35%), Positives = 92/173 (53%), Gaps = 17/173 (9%)
Query: 32  LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTA 91
           +R KLV++GD   GK+C+++   + QF      TV  ++++      D   V+  +WDTA
Sbjct: 4   IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEV--DGKQVELALWDTA 61
Query: 92  GQERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKAD 150
           GQE Y  L PL Y         + I SPDS  N  + W  E+ KH  P++ + LVGNK D
Sbjct: 62  GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKD 120
Query: 151 L----HEKRE--------VPAQDGIEYAEKNGMF-FIETSAKTADNINQLFEV 190
           L    H +RE        V  ++G + A + G F ++E SAKT D + ++FE+
Sbjct: 121 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEM 173

>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH Fragment Of Pdzrhogef Length = 178

Iteration: 1
 Score = 97.1 bits (240), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 61/173 (35%), Positives = 92/173 (53%), Gaps = 17/173 (9%)
Query: 32  LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTA 91
           +R KLV++GD   GK+C+++   + QF      TV  ++++      D   V+  +WDTA
Sbjct: 2   IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEV--DGKQVELALWDTA 59
Query: 92  GQERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKAD 150
           GQE Y  L PL Y         + I SPDS  N  + W  E+ KH  P++ + LVGNK D
Sbjct: 60  GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKD 118
Query: 151 L----HEKRE--------VPAQDGIEYAEKNGMF-FIETSAKTADNINQLFEV 190
           L    H +RE        V  ++G + A + G F ++E SAKT D + ++FE+
Sbjct: 119 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEM 171

>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177

Iteration: 1
 Score = 97.1 bits (240), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 61/173 (35%), Positives = 92/173 (53%), Gaps = 17/173 (9%)
Query: 32  LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTA 91
           +R KLV++GD   GK+C+++   + QF      TV  ++++      D   V+  +WDTA
Sbjct: 2   IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEV--DGKQVELALWDTA 59
Query: 92  GQERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKAD 150
           GQE Y  L PL Y         + I SPDS  N  + W  E+ KH  P++ + LVGNK D
Sbjct: 60  GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKD 118
Query: 151 L----HEKRE--------VPAQDGIEYAEKNGMF-FIETSAKTADNINQLFEV 190
           L    H +RE        V  ++G + A + G F ++E SAKT D + ++FE+
Sbjct: 119 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEM 171

>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex Length = 201

Iteration: 1
 Score = 97.1 bits (240), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 60/173 (34%), Positives = 93/173 (53%), Gaps = 17/173 (9%)
Query: 32  LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTA 91
           +R KLV++GD   GK+C+++ F + QF      TV  ++++      D   V+  +WDTA
Sbjct: 24  IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEV--DGKQVELALWDTA 81
Query: 92  GQERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKAD 150
           GQE Y  L PL Y         + I SPDS  N  + W  E+ KH  P++ + LVGNK D
Sbjct: 82  GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFXPNVPIILVGNKKD 140
Query: 151 L----HEKRE--------VPAQDGIEYAEKNGMF-FIETSAKTADNINQLFEV 190
           L    H +RE        V +++G + A +   F ++E SAKT + + ++FE+
Sbjct: 141 LRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEM 193

>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score = 96.7 bits (239), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 58/165 (35%), Positives = 91/165 (55%), Gaps = 7/165 (4%)
Query: 30  KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWD 89
           K+L +K++LLGD GVGKS ++ R+V  +FD  +  T+G  FL++ + + D   V  +IWD
Sbjct: 4   KSLLLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEV-DGRFVTLQIWD 62
Query: 90  TAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHG---SPD-IVMALV 145
           TAGQER+ +L   +YRG       + +    SF     W KE   +     P+     ++
Sbjct: 63  TAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVL 122
Query: 146 GNKADLHEKREVPAQDGIEYAEKNGMF-FIETSAKTADNINQLFE 189
           GNK D  E R+V  ++   +  +NG + ++ETSAK   N+   FE
Sbjct: 123 GNKVD-KEDRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFE 166

>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer With An Active Conformation Of Switch Ii Length = 177

Iteration: 1
 Score = 96.7 bits (239), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 59/170 (34%), Positives = 90/170 (52%), Gaps = 7/170 (4%)
Query: 25  GSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVK 84
           G+   K+   K++LLGD GVGKS ++ R+V  +FD     T+G  FL++ + + D   V 
Sbjct: 1   GAMAGKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEV-DGHFVT 59
Query: 85  FEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHG---SPD-I 140
            +IWDTAGQER+ +L   +YRG       + +    SF     W KE   +     P+  
Sbjct: 60  MQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESF 119
Query: 141 VMALVGNKADLHEKREVPAQDGIEYAEKNGMF-FIETSAKTADNINQLFE 189
              ++GNK D+ E R+V  ++   +   NG + + ETSAK A N+   FE
Sbjct: 120 PFVILGNKIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFE 168

>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179

Iteration: 1
 Score = 95.9 bits (237), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 58/168 (34%), Positives = 90/168 (53%), Gaps = 7/168 (4%)
Query: 27  SDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFE 86
           S  K+   K++LLGD GVGKS ++ R+V  +FD     T+G  FL++ + + D   V  +
Sbjct: 5   SAGKSSLFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEV-DGHFVTMQ 63
Query: 87  IWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHG---SPD-IVM 142
           IWDTAGQER+ +L   +YRG       + +    SF     W KE   +     P+    
Sbjct: 64  IWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPF 123
Query: 143 ALVGNKADLHEKREVPAQDGIEYAEKNGMF-FIETSAKTADNINQLFE 189
            ++GNK D+ E R+V  ++   + + NG + + ETSAK + N+   FE
Sbjct: 124 VILGNKTDIKE-RQVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFE 170

>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With Gdp Length = 180

Iteration: 1
 Score = 95.9 bits (237), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 61/173 (35%), Positives = 90/173 (52%), Gaps = 17/173 (9%)
Query: 32  LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTA 91
           +R KLV++GD   GK+C+++ F + QF      TV  ++++      D   V+  +WDTA
Sbjct: 4   IRKKLVIVGDVACGKTCLLIVFSKDQFPAVYVPTVFENYVADIEV--DGKQVELALWDTA 61
Query: 92  GQERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKAD 150
           GQE Y    PL Y         + I SPDS  N  + W  E+ KH  P++ + LVGNK D
Sbjct: 62  GQEDYDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKD 120
Query: 151 L----HEKRE--------VPAQDGIEYAEKNGMF-FIETSAKTADNINQLFEV 190
           L    H  RE        V   +G + A + G F ++E SAKT D + ++FE+
Sbjct: 121 LRNDEHTARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDGVREVFEM 173

>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177

Iteration: 1
 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 57/160 (35%), Positives = 86/160 (53%), Gaps = 7/160 (4%)
Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           K++LLGD GVGKS ++ R+V  +FD     T+G  FL++ + + D   V  +IWDTAGQE
Sbjct: 9   KVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEV-DGHFVTMQIWDTAGQE 67
Query: 95  RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHG---SPD-IVMALVGNKAD 150
           R+ +L   +YRG       + +    SF     W KE   +     P+     ++GNK D
Sbjct: 68  RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKID 127
Query: 151 LHEKREVPAQDGIEYAEKNGMF-FIETSAKTADNINQLFE 189
           + E R+V  ++   +   NG + + ETSAK A N+   FE
Sbjct: 128 ISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFE 166

>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa Mutant (Q63l) Length = 184

Iteration: 1
 Score = 94.4 bits (233), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 60/173 (34%), Positives = 91/173 (52%), Gaps = 17/173 (9%)
Query: 32  LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTA 91
           +R KLV++GD   GK+C+++   + QF      TV  ++++      D   V+  +WDTA
Sbjct: 7   IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEV--DGKQVELALWDTA 64
Query: 92  GQERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKAD 150
           G E Y  L PL Y         + I SPDS  N  + W  E+ KH  P++ + LVGNK D
Sbjct: 65  GLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKD 123
Query: 151 L----HEKRE--------VPAQDGIEYAEKNGMF-FIETSAKTADNINQLFEV 190
           L    H +RE        V  ++G + A + G F ++E SAKT D + ++FE+
Sbjct: 124 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEM 176

>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound To Gdp-Mg2+ Length = 218

Iteration: 1
 Score = 94.0 bits (232), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 53/164 (32%), Positives = 81/164 (49%)
Query: 25  GSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVK 84
           GS + + L  K+ L+GD GVGK+  + R + G+F+     TVGA     T        +K
Sbjct: 3   GSMERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIK 62
Query: 85  FEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMAL 144
           F +WDTAGQE+ A L  +YY G       +D+TS  +      WVKE Q     +  + +
Sbjct: 63  FNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVV 122
Query: 145 VGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
             NK D+  ++++  +  +E  +     + E SAKTA N    F
Sbjct: 123 CANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPF 166

>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc- Gmppnp Length = 193

Iteration: 1
 Score = 94.0 bits (232), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 59/173 (34%), Positives = 92/173 (53%), Gaps = 17/173 (9%)
Query: 32  LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTA 91
           +R KLV++GD   GK+C+++   + QF      TV  ++++      D   V+  +WDTA
Sbjct: 4   IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYIADIEV--DGKQVELALWDTA 61
Query: 92  GQERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKAD 150
           GQE Y  L PL Y         + I SPDS  N  + W  E+ KH  P++ + LVGNK D
Sbjct: 62  GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKD 120
Query: 151 L----HEKRE--------VPAQDGIEYAEKNGMF-FIETSAKTADNINQLFEV 190
           L    H +RE        V +++G + A +   F ++E SAKT + + ++FE+
Sbjct: 121 LRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEM 173

>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex Length = 167

Iteration: 1
 Score = 92.4 bits (228), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 58/160 (36%), Positives = 88/160 (55%), Gaps = 4/160 (2%)
Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           KLV+LG  GVGKS + ++FV+G F      T+  S+  Q     D+     EI DTAG E
Sbjct: 5   KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEV--DAQQCMLEILDTAGTE 62
Query: 95  RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKE-LQKHGSPDIVMALVGNKADLHE 153
           ++ A+  LY +        Y IT+  +FN  Q   ++ L+   + D+ M LVGNK DL +
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLED 122
Query: 154 KREVPAQDGIEYAEK-NGMFFIETSAKTADNINQLFEVLI 192
           +R V  + G   A + N   F+E+SAK+  N+N++F  L+
Sbjct: 123 ERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLV 162

>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1 Length = 169

Iteration: 1
 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 58/160 (36%), Positives = 88/160 (55%), Gaps = 4/160 (2%)
Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           KLV+LG  GVGKS + ++FV+G F      T+  S+  Q     D+     EI DTAG E
Sbjct: 7   KLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEV--DAQQCMLEILDTAGTE 64
Query: 95  RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKE-LQKHGSPDIVMALVGNKADLHE 153
           ++ A+  LY +        Y IT+  +FN  Q   ++ L+   + D+ M LVGNK DL +
Sbjct: 65  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLED 124
Query: 154 KREVPAQDGIEYAEK-NGMFFIETSAKTADNINQLFEVLI 192
           +R V  + G   A + N   F+E+SAK+  N+N++F  L+
Sbjct: 125 ERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLV 164

>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178

Iteration: 1
 Score = 91.7 bits (226), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 91/156 (58%), Gaps = 4/156 (2%)
Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           K++++G  GVGKS + L+F+  +F    + T   S+  + +   D   V+ +I DTAG E
Sbjct: 9   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVL--DGEEVQIDILDTAGLE 66
Query: 95  RYAALAPLYYRGXXXXXXXYDITSPDSFN-KAQYWVKELQKHGSPD-IVMALVGNKADLH 152
            YAA+   Y+R        + IT  +SF   A++  + L+     D I + +VGNK+DL 
Sbjct: 67  DYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLE 126
Query: 153 EKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
           E+R+VP ++    AE+ G+ ++ETSAKT  N++++F
Sbjct: 127 ERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVF 162

>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174

Iteration: 1
 Score = 91.7 bits (226), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 91/156 (58%), Gaps = 4/156 (2%)
Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           K++++G  GVGKS + L+F+  +F    + T   S+  + +   D   V+ +I DTAG E
Sbjct: 5   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVL--DGEEVQIDILDTAGLE 62
Query: 95  RYAALAPLYYRGXXXXXXXYDITSPDSFN-KAQYWVKELQKHGSPD-IVMALVGNKADLH 152
            YAA+   Y+R        + IT  +SF   A++  + L+     D I + +VGNK+DL 
Sbjct: 63  DYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLE 122
Query: 153 EKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
           E+R+VP ++    AE+ G+ ++ETSAKT  N++++F
Sbjct: 123 ERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVF 158

>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168

Iteration: 1
 Score = 90.1 bits (222), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 52/158 (32%), Positives = 83/158 (52%), Gaps = 2/158 (1%)
Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           +K+V++G+  VGKS ++ R+ +G F    K T+G  FL + I + D   V+  +WDTAGQ
Sbjct: 6   IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDED-VRLMLWDTAGQ 64
Query: 94  ERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE 153
           E + A+   YYRG       +  T  +SF     W +E       DI  ALV NK DL +
Sbjct: 65  EEFDAITKAYYRGAQACVLVFSTTDRESFEAISSW-REKVVAEVGDIPTALVQNKIDLLD 123
Query: 154 KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVL 191
              +  ++    A++  + F  TS K   N++++F+ L
Sbjct: 124 DSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYL 161

>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras- Binding-Domain Of C-Raf1 Kinase (Rafrbd) Length = 167

Iteration: 1
 Score = 89.0 bits (219), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 57/160 (35%), Positives = 86/160 (53%), Gaps = 4/160 (2%)
Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           KLV+LG  GVGKS + ++FV+G F      T+  S+  Q     D      EI DTAG E
Sbjct: 5   KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEV--DCQQCMLEILDTAGTE 62
Query: 95  RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKE-LQKHGSPDIVMALVGNKADLHE 153
           ++ A+  LY +        Y IT+  +FN  Q   ++ L+   + D+ M LVGNK DL +
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122
Query: 154 KREVPAQDGIEYAEK-NGMFFIETSAKTADNINQLFEVLI 192
           +R V  + G   A +     F+E+SAK+  N+N++F  L+
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLV 162

>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e) Complexed With Gppnhp And The Ras-Binding-Domain Of Human C-Raf1, Residues 51-131 Length = 167

Iteration: 1
 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/160 (35%), Positives = 86/160 (53%), Gaps = 4/160 (2%)
Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           KLV+LG  GVGKS + ++FV+G F      T+  S+  Q     D      EI DTAG E
Sbjct: 5   KLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYRKQVEV--DCQQCMLEILDTAGTE 62
Query: 95  RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKE-LQKHGSPDIVMALVGNKADLHE 153
           ++ A+  LY +        Y IT+  +FN  Q   ++ L+   + D+ M LVGNK DL +
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122
Query: 154 KREVPAQDGIEYAEK-NGMFFIETSAKTADNINQLFEVLI 192
           +R V  + G   A +     F+E+SAK+  N+N++F  L+
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLV 162

>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206

Iteration: 1
 Score = 88.6 bits (218), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 52/155 (33%), Positives = 88/155 (56%), Gaps = 3/155 (1%)
Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           K++++G  GVGKS + L+F+  +F    + T   S+  + +   D   V+ +I DTAGQE
Sbjct: 16  KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVL--DGEEVQIDILDTAGQE 73
Query: 95  RYAALAPLYYRGXXXXXXXYDITSPDSFN-KAQYWVKELQKHGSPDIVMALVGNKADLHE 153
            YAA+   Y+R        + IT  +SF   A +  + L+     ++   LVGNK+DL +
Sbjct: 74  DYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED 133
Query: 154 KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
           KR+V  ++    AE+  + ++ETSAKT  N++++F
Sbjct: 134 KRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVF 168

>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187

Iteration: 1
 Score = 88.2 bits (217), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 52/155 (33%), Positives = 88/155 (56%), Gaps = 3/155 (1%)
Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           K++++G  GVGKS + L+F+  +F    + T   S+  + +   D   V+ +I DTAGQE
Sbjct: 20  KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVL--DGEEVQIDILDTAGQE 77
Query: 95  RYAALAPLYYRGXXXXXXXYDITSPDSFN-KAQYWVKELQKHGSPDIVMALVGNKADLHE 153
            YAA+   Y+R        + IT  +SF   A +  + L+     ++   LVGNK+DL +
Sbjct: 78  DYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED 137
Query: 154 KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
           KR+V  ++    AE+  + ++ETSAKT  N++++F
Sbjct: 138 KRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVF 172

>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175

Iteration: 1
 Score = 88.2 bits (217), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 52/155 (33%), Positives = 88/155 (56%), Gaps = 3/155 (1%)
Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           K++++G  GVGKS + L+F+  +F    + T   S+  + +   D   V+ +I DTAGQE
Sbjct: 8   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVL--DGEEVQIDILDTAGQE 65
Query: 95  RYAALAPLYYRGXXXXXXXYDITSPDSFN-KAQYWVKELQKHGSPDIVMALVGNKADLHE 153
            YAA+   Y+R        + IT  +SF   A +  + L+     ++   LVGNK+DL +
Sbjct: 66  DYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED 125
Query: 154 KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
           KR+V  ++    AE+  + ++ETSAKT  N++++F
Sbjct: 126 KRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVF 160

>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State Length = 207

Iteration: 1
 Score = 87.0 bits (214), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 63/193 (32%), Positives = 94/193 (48%), Gaps = 22/193 (11%)
Query: 11  SSGQSGGLNNLENAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASF 70
           SSG   G  NL          +R KLV++GD   GK+C+++ F + +F      TV  ++
Sbjct: 8   SSGVDLGTENLYFQSM-----IRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENY 62
Query: 71  LSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWV 129
           ++      D   V+  +WDTAGQE Y  L PL Y         + + SPDS  N  + WV
Sbjct: 63  VADIEV--DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWV 120
Query: 130 KELQKHGSPDIVMALVGNKADL----HEKRE--------VPAQDGIEYAEKNGMF-FIET 176
            E+ KH  P++ + LV NK DL    H + E        V   DG   A +   + ++E 
Sbjct: 121 PEV-KHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLEC 179
Query: 177 SAKTADNINQLFE 189
           SAKT + + ++FE
Sbjct: 180 SAKTKEGVREVFE 192

>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168

Iteration: 1
 Score = 86.7 bits (213), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 51/155 (32%), Positives = 88/155 (56%), Gaps = 3/155 (1%)
Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           K++++G  GVGKS + L+F+  +F    + T   S+  + +   D   V+ +I DTAGQE
Sbjct: 6   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVL--DGEEVQIDILDTAGQE 63
Query: 95  RYAALAPLYYRGXXXXXXXYDITSPDSFN-KAQYWVKELQKHGSPDIVMALVGNKADLHE 153
            YAA+   Y+R        + IT  +SF   A +  + L+     ++   LVGNK+DL +
Sbjct: 64  DYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED 123
Query: 154 KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
           KR+V  ++    A++  + ++ETSAKT  N++++F
Sbjct: 124 KRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVF 158

>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8 Length = 180

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/172 (33%), Positives = 88/172 (51%), Gaps = 17/172 (9%)
Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKV-TVGASFLSQTIALQDSTTVKFEIWDTAG 92
           +K V +GD  VGK+C+++ +    F PT  V TV  +F +  +   D  TV   +WDTAG
Sbjct: 7   IKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVV--DGNTVNLGLWDTAG 63
Query: 93  QERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADL 151
           QE Y  L PL YRG       + + S  S+ N A+ W+ EL +H +P + + LVG K DL
Sbjct: 64  QEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPEL-RHYAPGVPIILVGTKLDL 122
Query: 152 HEKRE----------VPAQDGIEYAEKNGM-FFIETSAKTADNINQLFEVLI 192
            + ++          +    G E  +  G   +IE S+KT  N+  +F+  I
Sbjct: 123 RDDKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVFDAAI 174

>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras And Inhibit Sos-Mediated Nucleotide Exchange Activity Length = 189

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/159 (33%), Positives = 82/159 (51%), Gaps = 4/159 (2%)
Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           KLV++G  GVGKS + ++ ++  F      T+  S+  Q +   D  T   +I DTAGQE
Sbjct: 6   KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI--DGETCLLDILDTAGQE 63
Query: 95  RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHE 153
            Y+A+   Y R        + I +  SF    ++ +++++   S D+ M LVGNK DL  
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL-P 122
Query: 154 KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
            R V  +   + A   G+ FIETSAKT   ++  F  L+
Sbjct: 123 SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLV 161

>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/159 (33%), Positives = 83/159 (52%), Gaps = 4/159 (2%)
Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           KLV++G  GVGKS + ++ ++  F      T+  S+  Q +   D  T   +I DTAGQE
Sbjct: 6   KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI--DGETCLLDILDTAGQE 63
Query: 95  RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHE 153
            Y+A+   Y R        + I +  SF    ++ +++++   S D+ M LVGNK+DL  
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDL-P 122
Query: 154 KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
            R V  +   + A   G+ FIETSAKT   ++  F  L+
Sbjct: 123 SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLV 161

>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex Length = 180

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/172 (33%), Positives = 88/172 (51%), Gaps = 17/172 (9%)
Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKV-TVGASFLSQTIALQDSTTVKFEIWDTAG 92
           +K V +GD  VGK+C+++ +    F PT  V TV  +F +  +   D +TV   +WDTAG
Sbjct: 7   IKCVTVGDGAVGKTCMLISYTGNTF-PTDYVPTVFDNFSANVVV--DGSTVNLGLWDTAG 63
Query: 93  QERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADL 151
           QE Y  L PL YRG       + + S  S+ N  + W+ EL KH +P I + LVG K DL
Sbjct: 64  QEDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPEL-KHYAPGIPIVLVGTKLDL 122
Query: 152 HEKREV----PAQDGIEYAEKN-------GMFFIETSAKTADNINQLFEVLI 192
            + ++     P    I  A+          + ++E S+KT  N+  +F+  I
Sbjct: 123 RDDKQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVFDTAI 174

>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In Complex With The Active Rala Length = 175

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/155 (32%), Positives = 87/155 (56%), Gaps = 3/155 (1%)
Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           K++++G  GVGKS + L+F+  +F    + T   S+  + +   D   V+ +I DTAG E
Sbjct: 8   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVL--DGEEVQIDILDTAGLE 65
Query: 95  RYAALAPLYYRGXXXXXXXYDITSPDSFN-KAQYWVKELQKHGSPDIVMALVGNKADLHE 153
            YAA+   Y+R        + IT  +SF   A +  + L+     ++   LVGNK+DL +
Sbjct: 66  DYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED 125
Query: 154 KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
           KR+V  ++    AE+  + ++ETSAKT  N++++F
Sbjct: 126 KRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVF 160

>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9: The First Ras Superfamily Gtpase From The Plant Kingdom Length = 212

Iteration: 1
 Score = 83.6 bits (205), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 88/169 (52%), Gaps = 13/169 (7%)
Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           +K V +GD  VGK+C+++ +   +F PT  +       S  +A+ D   V   +WDTAGQ
Sbjct: 10  IKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANVAV-DGQIVNLGLWDTAGQ 67
Query: 94  ERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLH 152
           E Y+ L PL YRG       + + S  S+ N  + W+ EL++  +P++ + LVG K DL 
Sbjct: 68  EDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRF-APNVPIVLVGTKLDLR 126
Query: 153 EKR--------EVPAQDGIEYAEKNG-MFFIETSAKTADNINQLFEVLI 192
           + +         + +  G E  ++ G   +IE S+KT  N+  +F+  I
Sbjct: 127 DDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAI 175

>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive (Gdp-3'p- Bound) Form Length = 178

Iteration: 1
 Score = 83.6 bits (205), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 77/160 (48%), Gaps = 3/160 (1%)
Query: 33  RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAG 92
           ++K+V+LGD   GK+ +   F +  F    K T+G  F  + I L  +  V  +IWD  G
Sbjct: 6   QLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGG 65
Query: 93  QERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYW---VKELQKHGSPDIVMALVGNKA 149
           Q     +   Y  G       YDIT+  SF   + W   VK++ +      ++ALVGNK 
Sbjct: 66  QTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKI 125
Query: 150 DLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFE 189
           DL   R +  +  + + ++NG      SAKT D++   F+
Sbjct: 126 DLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQ 165

>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein Rhod Length = 214

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/198 (32%), Positives = 93/198 (46%), Gaps = 23/198 (11%)
Query: 11  SSGQSGGLNNL---ENAGSSDAKNLR-VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTV 66
           SSG   G  NL     AG      +R VK+VL+GD G GK+ +++ F  G F  +   TV
Sbjct: 8   SSGVDLGTENLYFQSMAGEEAPPGVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTV 67
Query: 67  GASFLSQTIALQ-DSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSF-NK 124
              F    + LQ     V   IWDTAGQ+ Y  L PL+Y         +D+TSP+SF N 
Sbjct: 68  ---FERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNI 124
Query: 125 AQYWVKELQKHGSPDIVMALVGNKADLHEKRE------------VPAQDGIEYAEKNG-M 171
              W  E+  H    + + +VG K DL + +             V    G E A   G +
Sbjct: 125 FNRWYPEVN-HFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAV 183
Query: 172 FFIETSAKTADNINQLFE 189
            ++E SA+  DN++ +F+
Sbjct: 184 AYLECSARLHDNVHAVFQ 201

>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5 Length = 182

Iteration: 1
 Score = 82.4 bits (202), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/172 (33%), Positives = 90/172 (52%), Gaps = 17/172 (9%)
Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKV-TVGASFLSQTIALQDSTTVKFEIWDTAG 92
           +K V +GD  VGK+C+++ +    F PT  V TV  +F +  +   +  TV   +WDTAG
Sbjct: 9   IKCVTVGDGAVGKTCLLISYTSNTF-PTDYVPTVFDNFSANVVV--NGATVNLGLWDTAG 65
Query: 93  QERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADL 151
           QE Y  L PL YRG       + + S  S+ N ++ W+ EL KH +P + + LVG K DL
Sbjct: 66  QEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPEL-KHYAPGVPIVLVGTKLDL 124
Query: 152 HEKRE--------VPAQ--DGIEYAEKNGM-FFIETSAKTADNINQLFEVLI 192
            + ++        VP     G E  +  G   +IE S+K+ +N+  +F+  I
Sbjct: 125 RDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAI 176

>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A Transforming And A Nontransforming Gly-12 Mutant Of P21-H-Ras Length = 166

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 81/159 (50%), Gaps = 4/159 (2%)
Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           KLV++G  GVGKS + ++ ++  F      T+  S+  Q +   D  T   +I DTAGQE
Sbjct: 5   KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI--DGETCLLDILDTAGQE 62
Query: 95  RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHE 153
            Y+A+   Y R        + I +  SF     + +++++   S D+ M LVGNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 154 KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
            R V ++   + A   G+ +IETSAKT   +   F  L+
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160

>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 81.6 bits (200), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 81/159 (50%), Gaps = 4/159 (2%)
Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           KLV++G  GVGKS + ++ ++  F      T+  S+  Q +   D  T   +I DTAGQE
Sbjct: 5   KLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI--DGETCLLDILDTAGQE 62
Query: 95  RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHE 153
            Y+A+   Y R        + I +  SF     + +++++   S D+ M LVGNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 154 KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
            R V ++   + A   G+ +IETSAKT   +   F  L+
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160

>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 81/159 (50%), Gaps = 4/159 (2%)
Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           KLV++G  GVGKS + ++ ++  F      T+  S+  Q +   D  T   +I DTAGQE
Sbjct: 5   KLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI--DGETCLLDILDTAGQE 62
Query: 95  RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHE 153
            Y+A+   Y R        + I +  SF     + +++++   S D+ M LVGNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 154 KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
            R V ++   + A   G+ +IETSAKT   +   F  L+
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160

>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And Magnesium Length = 166

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 81/159 (50%), Gaps = 4/159 (2%)
Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           KLV++G  GVGKS + ++ ++  F      T+  S+  Q +   D  T   +I DTAGQE
Sbjct: 5   KLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI--DGETCLLDILDTAGQE 62
Query: 95  RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHE 153
            Y+A+   Y R        + I +  SF     + +++++   S D+ M LVGNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 154 KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
            R V ++   + A   G+ +IETSAKT   +   F  L+
Sbjct: 122 GRTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160

>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 84/157 (53%), Gaps = 4/157 (2%)
Query: 32  LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTA 91
           ++ KLVL+GD G GK+  V R + G+F+     T+G   +   +   +   +KF +WDTA
Sbjct: 9   VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE-VHPLVFHTNRGPIKFNVWDTA 67
Query: 92  GQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADL 151
           GQE+Y  L   YY         +D+TS  ++     W ++L +    +I + L GNK D+
Sbjct: 68  GQEKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDI 126
Query: 152 HEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
            + R+V A+  + + +KN  ++ + SAK+  N  + F
Sbjct: 127 KD-RKVKAKSIVFHRKKNLQYY-DISAKSNYNFEKPF 161

>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 84/157 (53%), Gaps = 4/157 (2%)
Query: 32  LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTA 91
           ++ KLVL+GD G GK+  V R + G+F+     T+G   +   +   +   +KF +WDTA
Sbjct: 9   VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE-VHPLVFHTNRGPIKFNVWDTA 67
Query: 92  GQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADL 151
           GQE++  L   YY         +D+TS  ++     W ++L +    +I + L GNK D+
Sbjct: 68  GQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDI 126
Query: 152 HEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
            + R+V A+  + + +KN  ++ + SAK+  N  + F
Sbjct: 127 KD-RKVKAKSIVFHRKKNLQYY-DISAKSNYNFEKPF 161

>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From Saccharomyces Cerevisiae Length = 188

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 84/173 (48%), Gaps = 17/173 (9%)
Query: 31  NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDT 90
           ++R KLV++GD   GK+C+++   +GQF      TV  ++++      D   V+  +WDT
Sbjct: 8   SIRRKLVIVGDGACGKTCLLIVNSKGQFPEVYVPTVFENYVADVEV--DGRRVELALWDT 65
Query: 91  AGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQ-YWVKELQKHGSPDIVMALVGNKA 149
           AGQE Y  L PL Y         + I  PDS    Q  W+ E+  H    + + LVG K 
Sbjct: 66  AGQEDYDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEV-LHFCQGVPIILVGCKV 124
Query: 150 DLHE------------KREVPAQDGIEYAEKNGMF-FIETSAKTADNINQLFE 189
           DL              ++ V +Q+G   A++ G   + E SAKT   + ++FE
Sbjct: 125 DLRNDPQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVFE 177

>pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177

Iteration: 1
 Score = 77.8 bits (190), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 84/157 (53%), Gaps = 4/157 (2%)
Query: 32  LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTA 91
           ++ KLVL+GD G GK+  V R + G+F+     T+G   +   +   +   +KF +WDTA
Sbjct: 9   VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVE-VHPLVFHTNRGPIKFNVWDTA 67
Query: 92  GQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADL 151
           GQE++  L   YY         +D+TS  ++     W ++L +    +I + L GNK D+
Sbjct: 68  GQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDI 126
Query: 152 HEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
            + R+V A+  + + +KN  ++ + SAK+  N  + F
Sbjct: 127 KD-RKVKAKSIVFHRKKNLQYY-DISAKSNYNFEKPF 161

>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 204

Iteration: 1
 Score = 77.8 bits (190), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 84/157 (53%), Gaps = 4/157 (2%)
Query: 32  LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTA 91
           ++ KLVL+GD G GK+  V R + G+F+     T+G   +   +   +   +KF +WDTA
Sbjct: 2   VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE-VHPLVFHTNRGPIKFNVWDTA 60
Query: 92  GQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADL 151
           GQE++  L   YY         +D+TS  ++     W ++L +    +I + L GNK D+
Sbjct: 61  GQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDI 119
Query: 152 HEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
            + R+V A+  + + +KN  ++ + SAK+  N  + F
Sbjct: 120 KD-RKVKAKSIVFHRKKNLQYY-DISAKSNYNFEKPF 154

>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216

Iteration: 1
 Score = 77.8 bits (190), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 84/157 (53%), Gaps = 4/157 (2%)
Query: 32  LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTA 91
           ++ KLVL+GD G GK+  V R + G+F+     T+G   +   +   +   +KF +WDTA
Sbjct: 9   VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE-VHPLVFHTNRGPIKFNVWDTA 67
Query: 92  GQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADL 151
           GQE++  L   YY         +D+TS  ++     W ++L +    +I + L GNK D+
Sbjct: 68  GQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDI 126
Query: 152 HEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
            + R+V A+  + + +KN  ++ + SAK+  N  + F
Sbjct: 127 KD-RKVKAKSIVFHRKKNLQYY-DISAKSNYNFEKPF 161

>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221

Iteration: 1
 Score = 77.4 bits (189), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 84/157 (53%), Gaps = 4/157 (2%)
Query: 32  LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTA 91
           ++ KLVL+GD G GK+  V R + G+F+     T+G   +   +   +   +KF +WDTA
Sbjct: 14  VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE-VHPLVFHTNRGPIKFNVWDTA 72
Query: 92  GQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADL 151
           GQE++  L   YY         +D+TS  ++     W ++L +    +I + L GNK D+
Sbjct: 73  GQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDI 131
Query: 152 HEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
            + R+V A+  + + +KN  ++ + SAK+  N  + F
Sbjct: 132 KD-RKVKAKSIVFHRKKNLQYY-DISAKSNYNFEKPF 166

>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216

Iteration: 1
 Score = 77.4 bits (189), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 84/157 (53%), Gaps = 4/157 (2%)
Query: 32  LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTA 91
           ++ KLVL+GD G GK+  V R + G+F+     T+G   +   +   +   +KF +WDTA
Sbjct: 9   VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE-VHPLVFHTNRGPIKFNVWDTA 67
Query: 92  GQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADL 151
           GQE++  L   YY         +D+TS  ++     W ++L +    +I + L GNK D+
Sbjct: 68  GQEKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDI 126
Query: 152 HEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
            + R+V A+  + + +KN  ++ + SAK+  N  + F
Sbjct: 127 KD-RKVKAKSIVFHRKKNLQYY-DISAKSNYNFEKPF 161

>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216

Iteration: 1
 Score = 77.4 bits (189), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 84/157 (53%), Gaps = 4/157 (2%)
Query: 32  LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTA 91
           ++ KLVL+GD G GK+  V R + G+F+     T+G   +   +   +   +KF +WDTA
Sbjct: 9   VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE-VHPLVFHTNRGPIKFNVWDTA 67
Query: 92  GQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADL 151
           GQE++  L   YY         +D+TS  ++     W ++L +    +I + L GNK D+
Sbjct: 68  GQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDI 126
Query: 152 HEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
            + R+V A+  + + +KN  ++ + SAK+  N  + F
Sbjct: 127 KD-RKVKAKSIVFHRKKNLQYY-DISAKSNYNFEKPF 161

>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State Length = 196

Iteration: 1
 Score = 77.0 bits (188), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 64/180 (35%), Positives = 89/180 (49%), Gaps = 7/180 (3%)
Query: 11  SSGQSGGLNNLENAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASF 70
           SSG   G  NL     S AK+  VKL + G +GVGKS +V+RF+  +F      T+ +++
Sbjct: 8   SSGVDLGTENL--YFQSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY 65
Query: 71  LSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVK 130
             Q  A  D   V  EI DTAGQE        + R        YDIT   SF +      
Sbjct: 66  RHQ--ATIDDEVVSMEILDTAGQEDTIQREG-HMRWGEGFVLVYDITDRGSFEEVLPLKN 122
Query: 131 ELQKHGSP-DIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTAD-NINQLF 188
            L +   P ++ + LVGNKADL   R+V  ++G + A +    F E SA T + NI ++F
Sbjct: 123 ILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIF 182

>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216

Iteration: 1
 Score = 77.0 bits (188), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 85/157 (54%), Gaps = 4/157 (2%)
Query: 32  LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTA 91
           ++ KLVL+GD G GK+  V R + G+F+     T+G   +   +   +   +KF +WDTA
Sbjct: 9   VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE-VHPLVFHTNRGPIKFNVWDTA 67
Query: 92  GQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADL 151
           GQE++  L   YY         +D+TS  ++     W ++L +    +I + L GNK D+
Sbjct: 68  GQEKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDI 126
Query: 152 HEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
            + R+V A+  + + +KN  ++ + SAK+  N  + F
Sbjct: 127 KD-RKVKAKSIVFHRKKNLQYY-DISAKSNYNFEKPF 161

>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State Length = 201

Iteration: 1
 Score = 76.6 bits (187), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 85/174 (48%), Gaps = 17/174 (9%)
Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           VK VL+GD  VGK+ +V+ +    + PT  +       S  +++ D   V+ ++ DTAGQ
Sbjct: 21  VKCVLVGDGAVGKTSLVVSYTTNGY-PTEYIPTAFDNFSAVVSV-DGRPVRLQLCDTAGQ 78
Query: 94  ERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLH 152
           + +  L PL Y         + + SP SF N ++ WV E++ H  P   + LVG ++DL 
Sbjct: 79  DEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCH-CPKAPIILVGTQSDLR 137
Query: 153 E------------KREVPAQDGIEYAEK-NGMFFIETSAKTADNINQLFEVLIT 193
           E            ++ VP +     AE+     +IE SA T  N+ ++F+  I 
Sbjct: 138 EDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIV 191

>pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216

Iteration: 1
 Score = 76.6 bits (187), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 84/157 (53%), Gaps = 4/157 (2%)
Query: 32  LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTA 91
           ++ KLVL+GD G GK+  V R + G+F+     T+G   +   +   +   +KF +WDTA
Sbjct: 9   VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVE-VHPLVFHTNRGPIKFNVWDTA 67
Query: 92  GQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADL 151
           GQE++  L   YY         +D+TS  ++     W ++L +    +I + L GNK D+
Sbjct: 68  GQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDI 126
Query: 152 HEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
            + R+V A+  + + +KN  ++ + SAK+  N  + F
Sbjct: 127 KD-RKVKAKSIVFHRKKNLQYY-DISAKSNYNFEKPF 161

>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1 Length = 201

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/160 (34%), Positives = 84/160 (52%), Gaps = 7/160 (4%)
Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           K+V+LG   VGK+ +  +FV G+F      TV  ++ S+ + L         + DTAGQ+
Sbjct: 26  KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTL-GKDEFHLHLVDTAGQD 83
Query: 95  RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHE 153
            Y+ L   +  G       Y +TS  SF   +   ++L + HG   + + LVGNKADL  
Sbjct: 84  EYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSP 143
Query: 154 KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT 193
           +REV A +G + AE  G  F+E+SA+     NQL + + T
Sbjct: 144 EREVQAVEGKKLAESWGATFMESSARE----NQLTQGIFT 179

>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex Length = 172

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 79/154 (51%), Gaps = 4/154 (2%)
Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           KLVL+GD G GK+  V R + G+F+     T+G      +    +   +KF++WDTAG E
Sbjct: 7   KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSF-YTNFGEIKFDVWDTAGLE 65
Query: 95  RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
           ++  L   YY         +D+TS  ++     W ++L +    +I + L GNK D+ E 
Sbjct: 66  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDVKE- 123
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
           R+V A+  I +  K  + + + SAK+  N  + F
Sbjct: 124 RKVKAKT-ITFHRKKNLQYYDISAKSNYNFEKPF 156

>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To Ehrho1-Gtpgammas Length = 188

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/181 (30%), Positives = 91/181 (50%), Gaps = 9/181 (4%)
Query: 23  NAGSSDAKNLR--VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDS 80
           N G+   +N +  +K+V++GD  VGK+C++L F +G+  PT+ V       S  +  ++ 
Sbjct: 10  NTGAGKIENGKKALKIVVVGDGAVGKTCLLLAFSKGEI-PTAYVPTVFENFSHVMKYKNE 68
Query: 81  TTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPD 139
             +   +WDTAGQE Y  L PL Y         + + +  SF N +  W  E+ KH    
Sbjct: 69  EFI-LHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEI-KHYIDT 126
Query: 140 IVMALVGNKADLHE--KREVPAQDGIEYAEKNG-MFFIETSAKTADNINQLFEVLITCTS 196
               LVG K DL +    +V  Q+G +  +K G + +IE S+     +N++FE  + C  
Sbjct: 127 AKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIF 186
Query: 197 S 197
           S
Sbjct: 187 S 187

>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium Length = 194

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/181 (30%), Positives = 91/181 (50%), Gaps = 9/181 (4%)
Query: 23  NAGSSDAKNLR--VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDS 80
           N G+   +N +  +K+V++GD  VGK+C++L F +G+  PT+ V       S  +  ++ 
Sbjct: 11  NTGAGKIENGKKALKIVVVGDGAVGKTCLLLAFSKGEI-PTAYVPTVFENFSHVMKYKNE 69
Query: 81  TTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPD 139
             +   +WDTAGQE Y  L PL Y         + + +  SF N +  W  E+ KH    
Sbjct: 70  EFI-LHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEI-KHYIDT 127
Query: 140 IVMALVGNKADLHE--KREVPAQDGIEYAEKNG-MFFIETSAKTADNINQLFEVLITCTS 196
               LVG K DL +    +V  Q+G +  +K G + +IE S+     +N++FE  + C  
Sbjct: 128 AKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIF 187
Query: 197 S 197
           S
Sbjct: 188 S 188

>pdb|3ICQ|B Chain B, Karyopherin Nuclear State Length = 171

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 79/154 (51%), Gaps = 4/154 (2%)
Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           KLVL+GD G GK+  V R + G+F+     T+G      +    +   +KF++WDTAG E
Sbjct: 6   KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSF-YTNFGEIKFDVWDTAGLE 64
Query: 95  RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
           ++  L   YY         +D+TS  ++     W ++L +    +I + L GNK D+ E 
Sbjct: 65  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDVKE- 122
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
           R+V A+  I +  K  + + + SAK+  N  + F
Sbjct: 123 RKVKAKT-ITFHRKKNLQYYDISAKSNYNFEKPF 155

>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export Complex Length = 176

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 83/157 (52%), Gaps = 4/157 (2%)
Query: 32  LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTA 91
           ++ KLVL+GD G GK+  V R + G+F+     T+G   +   +   +   +KF +WDTA
Sbjct: 5   VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE-VHPLVFHTNRGPIKFNVWDTA 63
Query: 92  GQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADL 151
           G E++  L   YY         +D+TS  ++     W ++L +    +I + L GNK D+
Sbjct: 64  GLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDI 122
Query: 152 HEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
            + R+V A+  + + +KN  ++ + SAK+  N  + F
Sbjct: 123 KD-RKVKAKSIVFHRKKNLQYY-DISAKSNYNFEKPF 157

>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex Length = 182

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 83/157 (52%), Gaps = 4/157 (2%)
Query: 32  LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTA 91
           ++ KLVL+GD G GK+  V R + G+F+     T+G   +   +   +   +KF +WDTA
Sbjct: 11  VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE-VHPLVFHTNRGPIKFNVWDTA 69
Query: 92  GQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADL 151
           G E++  L   YY         +D+TS  ++     W ++L +    +I + L GNK D+
Sbjct: 70  GLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDI 128
Query: 152 HEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
            + R+V A+  + + +KN  ++ + SAK+  N  + F
Sbjct: 129 KD-RKVKAKSIVFHRKKNLQYY-DISAKSNYNFEKPF 163

>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 219

Iteration: 1
 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 79/154 (51%), Gaps = 4/154 (2%)
Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           KLVL+GD G GK+  V R + G+F+     T+G      +    +   +KF++WDTAG E
Sbjct: 14  KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSF-YTNFGEIKFDVWDTAGLE 72
Query: 95  RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
           ++  L   YY         +D+TS  ++     W ++L +    +I + L GNK D+ E 
Sbjct: 73  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDVKE- 130
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
           R+V A+  I +  K  + + + SAK+  N  + F
Sbjct: 131 RKVKAKT-ITFHRKKNLQYYDISAKSNYNFEKPF 163

>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant Length = 216

Iteration: 1
 Score = 74.3 bits (181), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 83/157 (52%), Gaps = 4/157 (2%)
Query: 32  LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTA 91
           ++ KLVL+GD G GK+  V R + G+F+     T+G   +   +   +   +KF +WDTA
Sbjct: 9   VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE-VHPLVFHTNRGPIKFNVWDTA 67
Query: 92  GQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADL 151
           G E++  L   YY         +D+TS  ++     W ++L +    +I + L GNK D+
Sbjct: 68  GLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDI 126
Query: 152 HEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
            + R+V A+  + + +KN  ++ + SAK+  N  + F
Sbjct: 127 KD-RKVKAKSIVFHRKKNLQYY-DISAKSNYNFEKPF 161

>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex Length = 221

Iteration: 1
 Score = 73.9 bits (180), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 83/157 (52%), Gaps = 4/157 (2%)
Query: 32  LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTA 91
           ++ KLVL+GD G GK+  V R + G+ +     T+G   +   +   +   +KF +WDTA
Sbjct: 14  VQFKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVE-VHPLVFHTNRGPIKFNVWDTA 72
Query: 92  GQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADL 151
           GQE++  L   YY         +D+TS  ++     W ++L +    +I + L GNK D+
Sbjct: 73  GQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDI 131
Query: 152 HEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
            + R+V A+  + + +KN  ++ + SAK+  N  + F
Sbjct: 132 KD-RKVKAKSIVFHRKKNLQYY-DISAKSNYNFEKPF 166

>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 74/148 (50%), Gaps = 4/148 (2%)
Query: 46  KSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYR 105
           KS + ++ ++  F      T+  S+  Q +   D  T   +I DTAGQE Y+A+   Y R
Sbjct: 17  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMR 74
Query: 106 GXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHEKREVPAQDGIE 164
                   + I +  SF    ++ +++++   S D+ M LVGNK+DL   R V  +   +
Sbjct: 75  TGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDL-PSRTVDTKQAQD 133
Query: 165 YAEKNGMFFIETSAKTADNINQLFEVLI 192
            A   G+ FIETSAKT   ++  F  L+
Sbjct: 134 LARSYGIPFIETSAKTRQGVDDAFYTLV 161

>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 74/148 (50%), Gaps = 4/148 (2%)
Query: 46  KSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYR 105
           KS + ++ ++  F      T+  S+  Q +   D  T   +I DTAGQE Y+A+   Y R
Sbjct: 17  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMR 74
Query: 106 GXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHEKREVPAQDGIE 164
                   + I +  SF    ++ +++++   S D+ M LVGNK+DL   R V  +   +
Sbjct: 75  TGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDL-PSRTVDTKQAQD 133
Query: 165 YAEKNGMFFIETSAKTADNINQLFEVLI 192
            A   G+ FIETSAKT   ++  F  L+
Sbjct: 134 LARSYGIPFIETSAKTRQGVDDAFYTLV 161

>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex With Rac1 (T17n Mutant) Length = 184

Iteration: 1
 Score = 70.9 bits (172), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 85/180 (47%), Gaps = 18/180 (10%)
Query: 25  GSSDAKNLR-VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTV 83
           GSS +  ++ +K V++GD  VGK+C+++ +    F      TV  ++ +  +   D   V
Sbjct: 1   GSSGSSGMQAIKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNYSANVMV--DGKPV 58
Query: 84  KFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVM 142
              +WDTAGQE Y  L PL Y         + + SP SF N    W  E++ H  P+  +
Sbjct: 59  NLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHH-CPNTPI 117
Query: 143 ALVGNKADLH----------EKREVPA--QDGIEYAEKNGMF-FIETSAKTADNINQLFE 189
            LVG K DL           EK+  P     G+  A++ G   ++E SA T   +  +F+
Sbjct: 118 ILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 177

>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp Length = 190

Iteration: 1
 Score = 70.9 bits (172), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 60/185 (32%), Positives = 89/185 (48%), Gaps = 9/185 (4%)
Query: 15  SGGLNNLENAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQT 74
           S G  NL   G ++      KLV++G  GVGKS + ++ ++  F      T+  S+  Q 
Sbjct: 8   SSGRENLYFQGMTE-----YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQV 62
Query: 75  IALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQK 134
           +   D  T   +I DTAGQE Y+A+   Y R        + I +  SF     + +++++
Sbjct: 63  VI--DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKR 120
Query: 135 -HGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT 193
              S D+ M LVGNK DL   R V  +   E A+  G+ FIETSAKT   +   F  L+ 
Sbjct: 121 VKDSDDVPMVLVGNKCDL-PTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVR 179
Query: 194 CTSSY 198
               Y
Sbjct: 180 EIRQY 184

>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation Length = 192

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 79/170 (46%), Gaps = 17/170 (10%)
Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           +K V++GD  VGK+C+++ +    F      TV  ++ +  +   D   V   +WDTAGQ
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV--DGKPVNLGLWDTAGQ 61
Query: 94  ERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLH 152
           E Y  L PL Y         + + SP SF N    W  E+ +H  P+  + LVG K DL 
Sbjct: 62  EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLR 120
Query: 153 ----------EKREVPA--QDGIEYAEKNGMF-FIETSAKTADNINQLFE 189
                     EK+  P     G+  A++ G   ++E SA T   +  +F+
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 170

>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras, In The Gdp- Bound State Length = 181

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 73/154 (47%), Gaps = 3/154 (1%)
Query: 46  KSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYR 105
           KS + ++F++  F      T+  S+    I   D    + +I DTAGQE + A+   Y R
Sbjct: 22  KSALTIQFIQSYFVSDYDPTIEDSYTK--ICSVDGIPARLDILDTAGQEEFGAMREQYMR 79
Query: 106 GXXXXXXXYDITSPDSFNKA-QYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIE 164
                   + I    SFN+  + + + L+     D  + LVGNKADL  +R+VP  +   
Sbjct: 80  AGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASA 139
Query: 165 YAEKNGMFFIETSAKTADNINQLFEVLITCTSSY 198
           +   + + + E SAK   N+++ FE L+     Y
Sbjct: 140 FGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKY 173

>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1 Length = 188

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 79/170 (46%), Gaps = 17/170 (10%)
Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           +K V++GD  VGK+C+++ +    F      TV  ++ +  +   D   V   +WDTAGQ
Sbjct: 8   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV--DGKPVNLGLWDTAGQ 65
Query: 94  ERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLH 152
           E Y  L PL Y         + + SP SF N    W  E+ +H  P+  + LVG K DL 
Sbjct: 66  EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLR 124
Query: 153 ----------EKREVPA--QDGIEYAEKNGMF-FIETSAKTADNINQLFE 189
                     EK+  P     G+  A++ G   ++E SA T   +  +F+
Sbjct: 125 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 174

>pdb|1MH1|A Chain A, Small G-Protein Length = 186

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 79/170 (46%), Gaps = 17/170 (10%)
Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           +K V++GD  VGK+C+++ +    F      TV  ++ +  +   D   V   +WDTAGQ
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV--DGKPVNLGLWDTAGQ 63
Query: 94  ERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLH 152
           E Y  L PL Y         + + SP SF N    W  E+ +H  P+  + LVG K DL 
Sbjct: 64  EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLR 122
Query: 153 ----------EKREVPA--QDGIEYAEKNGMF-FIETSAKTADNINQLFE 189
                     EK+  P     G+  A++ G   ++E SA T   +  +F+
Sbjct: 123 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 172

>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2 (Rras2) In The Gdp Bound State Length = 172

Iteration: 1
 Score = 70.5 bits (171), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 76/154 (49%), Gaps = 3/154 (1%)
Query: 46  KSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYR 105
           KS + ++F++  F      T+  S+  Q +   D    + +I DTAGQE + A+   Y R
Sbjct: 18  KSALTIQFIQSYFVTDYDPTIEDSYTKQCVI--DDRAARLDILDTAGQEEFGAMREQYMR 75
Query: 106 GXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPD-IVMALVGNKADLHEKREVPAQDGIE 164
                   + +T   SF +   + +++ +    D   M L+GNKADL  +R+V  ++G +
Sbjct: 76  TGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQ 135
Query: 165 YAEKNGMFFIETSAKTADNINQLFEVLITCTSSY 198
            A +  + ++E SAK   N++Q F  L+     +
Sbjct: 136 LARQLKVTYMEASAKIRMNVDQAFHELVRVIRKF 169

>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And Inorganic Phosphate Length = 172

Iteration: 1
 Score = 70.5 bits (171), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 78/160 (48%), Gaps = 4/160 (2%)
Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           ++ + G  GVGKS +VLRFV+G F  +   TV  ++  Q I+  D +    +I DT G  
Sbjct: 5   RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISC-DKSICTLQITDTTGSH 62
Query: 95  RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKEL--QKHGSPDIVMALVGNKADLH 152
           ++ A+  L           Y ITS  S  + +   +++   K     I + LVGNK D  
Sbjct: 63  QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 122
Query: 153 EKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
             REV + +    A      F+ETSAK   N+ +LF+ L+
Sbjct: 123 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELL 162

>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase And Gtpase Activating Protein Sptp Bound To Rac1 Length = 184

Iteration: 1
 Score = 70.5 bits (171), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 79/170 (46%), Gaps = 17/170 (10%)
Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           +K V++GD  VGK+C+++ +    F      TV  ++ +  +   D   V   +WDTAGQ
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV--DGKPVNLGLWDTAGQ 61
Query: 94  ERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLH 152
           E Y  L PL Y         + + SP SF N    W  E+ +H  P+  + LVG K DL 
Sbjct: 62  EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLR 120
Query: 153 ----------EKREVPA--QDGIEYAEKNGMF-FIETSAKTADNINQLFE 189
                     EK+  P     G+  A++ G   ++E SA T   +  +F+
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 170

>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue Length = 187

Iteration: 1
 Score = 70.5 bits (171), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 88/179 (49%), Gaps = 9/179 (5%)
Query: 15  SGGLNNLENAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQT 74
           S G  NL   G ++      KLV++G  GVGKS + ++ ++  F      T+  S+  Q 
Sbjct: 8   SSGRENLYFQGMTE-----YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQV 62
Query: 75  IALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQK 134
           +   D  T   +I DTAG E Y+A+   Y R        + I +  SF    ++ +++++
Sbjct: 63  VI--DGETCLLDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKR 120
Query: 135 -HGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
              S D+ M LVGNK DL   R V  +   + A   G+ FIETSAKT   ++  F  L+
Sbjct: 121 VKDSEDVPMVLVGNKCDL-PSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLV 178

>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1 Length = 204

Iteration: 1
 Score = 70.1 bits (170), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 79/170 (46%), Gaps = 17/170 (10%)
Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           +K V++GD  VGK+C+++ +    F      TV  ++ +  +   D   V   +WDTAGQ
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV--DGKPVNLGLWDTAGQ 88
Query: 94  ERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLH 152
           E Y  L PL Y         + + SP SF N    W  E++ H  P+  + LVG K DL 
Sbjct: 89  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHH-CPNTPIILVGTKLDLR 147
Query: 153 ----------EKREVPA--QDGIEYAEKNGMF-FIETSAKTADNINQLFE 189
                     EK+  P     G+  A++ G   ++E SA T   +  +F+
Sbjct: 148 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 197

>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1. Length = 196

Iteration: 1
 Score = 70.1 bits (170), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 79/170 (46%), Gaps = 17/170 (10%)
Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           +K V++GD  VGK+C+++ +    F      TV  ++ +  +   D   V   +WDTAGQ
Sbjct: 23  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV--DGKPVNLGLWDTAGQ 80
Query: 94  ERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLH 152
           E Y  L PL Y         + + SP SF N    W  E+ +H  P+  + LVG K DL 
Sbjct: 81  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLR 139
Query: 153 ----------EKREVPA--QDGIEYAEKNGMF-FIETSAKTADNINQLFE 189
                     EK+  P     G+  A++ G   ++E SA T   +  +F+
Sbjct: 140 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 189

>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The Vav1 Exchange Factor Length = 184

Iteration: 1
 Score = 70.1 bits (170), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 79/170 (46%), Gaps = 17/170 (10%)
Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           +K V++GD  VGK+C+++ +    F      TV  ++ +  +   D   V   +WDTAGQ
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV--DGKPVNLGLWDTAGQ 61
Query: 94  ERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLH 152
           E Y  L PL Y         + + SP SF N    W  E+ +H  P+  + LVG K DL 
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLR 120
Query: 153 ----------EKREVPA--QDGIEYAEKNGMF-FIETSAKTADNINQLFE 189
                     EK+  P     G+  A++ G   ++E SA T   +  +F+
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 170

>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With Arfaptin (P21) Length = 192

Iteration: 1
 Score = 70.1 bits (170), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 79/170 (46%), Gaps = 17/170 (10%)
Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           +K V++GD  VGK+C+++ +    F      TV  ++ +  +   D   V   +WDTAGQ
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV--DGKPVNLGLWDTAGQ 61
Query: 94  ERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLH 152
           E Y  L PL Y         + + SP SF N    W  E+ +H  P+  + LVG K DL 
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLR 120
Query: 153 ----------EKREVPA--QDGIEYAEKNGMF-FIETSAKTADNINQLFE 189
                     EK+  P     G+  A++ G   ++E SA T   +  +F+
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 170

>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant Length = 187

Iteration: 1
 Score = 70.1 bits (170), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 79/170 (46%), Gaps = 17/170 (10%)
Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           +K V++GD  VGK+C+++ +    F      TV  ++ +  +   D   V   +WDTAGQ
Sbjct: 14  IKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYSANVMV--DGKPVNLGLWDTAGQ 71
Query: 94  ERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLH 152
           E Y  L PL Y         + + SP SF N    W  E+ +H  P+  + LVG K DL 
Sbjct: 72  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLR 130
Query: 153 ----------EKREVPA--QDGIEYAEKNGMF-FIETSAKTADNINQLFE 189
                     EK+  P     G+  A++ G   ++E SA T   +  +F+
Sbjct: 131 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 180

>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta 2 Length = 178

Iteration: 1
 Score = 70.1 bits (170), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 79/170 (46%), Gaps = 17/170 (10%)
Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           +K V++GD  VGK+C+++ +    F      TV  ++ +  +   D   V   +WDTAGQ
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV--DGKPVNLGLWDTAGQ 61
Query: 94  ERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLH 152
           E Y  L PL Y         + + SP SF N    W  E+ +H  P+  + LVG K DL 
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLR 120
Query: 153 ----------EKREVPA--QDGIEYAEKNGMF-FIETSAKTADNINQLFE 189
                     EK+  P     G+  A++ G   ++E SA T   +  +F+
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 170

>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1 In Complex With Rac1 Length = 184

Iteration: 1
 Score = 70.1 bits (170), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 79/170 (46%), Gaps = 17/170 (10%)
Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           +K V++GD  VGK+C+++ +    F      TV  ++ +  +   D   V   +WDTAGQ
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV--DGKPVNLGLWDTAGQ 61
Query: 94  ERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLH 152
           E Y  L PL Y         + + SP SF N    W  E+ +H  P+  + LVG K DL 
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLR 120
Query: 153 ----------EKREVPA--QDGIEYAEKNGMF-FIETSAKTADNINQLFE 189
                     EK+  P     G+  A++ G   ++E SA T   +  +F+
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 170

>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine Nucleotide Exchange Region Of Tiam1 Length = 177

Iteration: 1
 Score = 70.1 bits (170), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 79/170 (46%), Gaps = 17/170 (10%)
Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           +K V++GD  VGK+C+++ +    F      TV  ++ +  +   D   V   +WDTAGQ
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV--DGKPVNLGLWDTAGQ 61
Query: 94  ERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLH 152
           E Y  L PL Y         + + SP SF N    W  E+ +H  P+  + LVG K DL 
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLR 120
Query: 153 ----------EKREVPA--QDGIEYAEKNGMF-FIETSAKTADNINQLFE 189
                     EK+  P     G+  A++ G   ++E SA T   +  +F+
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 170

>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac Length = 176

Iteration: 1
 Score = 70.1 bits (170), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 79/170 (46%), Gaps = 17/170 (10%)
Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           +K V++GD  VGK+C+++ +    F      TV  ++ +  +   D   V   +WDTAGQ
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV--DGKPVNLGLWDTAGQ 61
Query: 94  ERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLH 152
           E Y  L PL Y         + + SP SF N    W  E+ +H  P+  + LVG K DL 
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLR 120
Query: 153 ----------EKREVPA--QDGIEYAEKNGMF-FIETSAKTADNINQLFE 189
                     EK+  P     G+  A++ G   ++E SA T   +  +F+
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 170

>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex Length = 192

Iteration: 1
 Score = 70.1 bits (170), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 79/170 (46%), Gaps = 17/170 (10%)
Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           +K V++GD  VGK+C+++ +    F      TV  ++ +  +   DS  V   +WDTAGQ
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV--DSKPVNLGLWDTAGQ 61
Query: 94  ERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLH 152
           E Y  L PL Y         + + SP S+ N    W  E+ +H  P   + LVG K DL 
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEV-RHHCPSTPIILVGTKLDLR 120
Query: 153 ----------EKREVPA--QDGIEYA-EKNGMFFIETSAKTADNINQLFE 189
                     EK+  P     G+  A E + + ++E SA T   +  +F+
Sbjct: 121 DDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFD 170

>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp Length = 185

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 79/170 (46%), Gaps = 17/170 (10%)
Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           +K V++GD  VGK+C+++ +    F      TV  ++ +  +   DS  V   +WDTAGQ
Sbjct: 10  IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV--DSKPVNLGLWDTAGQ 67
Query: 94  ERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLH 152
           E Y  L PL Y         + + SP S+ N    W  E++ H  P   + LVG K DL 
Sbjct: 68  EDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHH-CPSTPIILVGTKLDLR 126
Query: 153 ----------EKREVPA--QDGIEYA-EKNGMFFIETSAKTADNINQLFE 189
                     EK+  P     G+  A E + + ++E SA T   +  +F+
Sbjct: 127 DDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFD 176

>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs Length = 184

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 79/170 (46%), Gaps = 17/170 (10%)
Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           +K V++GD  VGK+C+++ +    F      TV  ++ +  +   DS  V   +WDTAGQ
Sbjct: 11  IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV--DSKPVNLGLWDTAGQ 68
Query: 94  ERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLH 152
           E Y  L PL Y         + + SP S+ N    W  E++ H  P   + LVG K DL 
Sbjct: 69  EDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHH-CPSTPIILVGTKLDLR 127
Query: 153 ----------EKREVPA--QDGIEYA-EKNGMFFIETSAKTADNINQLFE 189
                     EK+  P     G+  A E + + ++E SA T   +  +F+
Sbjct: 128 DDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFD 177

>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 189

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 72/148 (48%), Gaps = 4/148 (2%)
Query: 46  KSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYR 105
           KS + ++ ++  F      T+  S+  Q +   D  T   +I DTAGQE Y+A+   Y R
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMR 73
Query: 106 GXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHEKREVPAQDGIE 164
                   + I +  SF     + +++++   S D+ M LVGNK DL   R V ++   +
Sbjct: 74  TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQD 132
Query: 165 YAEKNGMFFIETSAKTADNINQLFEVLI 192
            A   G+ +IETSAKT   +   F  L+
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLV 160

>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras Length = 173

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 72/148 (48%), Gaps = 4/148 (2%)
Query: 46  KSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYR 105
           KS + ++ ++  F      T+  S+  Q +   D  T   +I DTAGQE Y+A+   Y R
Sbjct: 23  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMR 80
Query: 106 GXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHEKREVPAQDGIE 164
                   + I +  SF     + +++++   S D+ M LVGNK DL   R V ++   +
Sbjct: 81  TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQD 139
Query: 165 YAEKNGMFFIETSAKTADNINQLFEVLI 192
            A   G+ +IETSAKT   +   F  L+
Sbjct: 140 LARSYGIPYIETSAKTRQGVEDAFYTLV 167

>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant Length = 204

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 81/174 (46%), Gaps = 25/174 (14%)
Query: 34  VKLVLLGDSGVGKSCIVLRF----VRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWD 89
           +K V++GD  VGK+C+++ +    + G++ PT      A+ +       D   V   +WD
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNYSANVMV------DGKPVNLGLWD 84
Query: 90  TAGQERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNK 148
           TAGQE Y  L PL Y         + + SP SF N    W  E++ H  P+  + LVG K
Sbjct: 85  TAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHH-CPNTPIILVGTK 143
Query: 149 ADLH----------EKREVPA--QDGIEYAEKNGMF-FIETSAKTADNINQLFE 189
            DL           EK+  P     G+  A++ G   ++E SA T   +  +F+
Sbjct: 144 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 197

>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras P21 In Complex With Gppnhp Length = 166

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 73/148 (49%), Gaps = 4/148 (2%)
Query: 46  KSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYR 105
           KS + ++ ++  F      T+  S+  Q +   D  T   +I DTAGQE Y+A+   Y R
Sbjct: 16  KSALTIQLIQNHFVDECDPTIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMR 73
Query: 106 GXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHEKREVPAQDGIE 164
                   + I +  SF     + +++++   S D+ M LVGNK+DL   R V ++   +
Sbjct: 74  TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDL-AARTVESRQAQD 132
Query: 165 YAEKNGMFFIETSAKTADNINQLFEVLI 192
            A   G+ +IETSAKT   +   F  L+
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLV 160

>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of Gpp(Nh)p. Length = 180

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 78/170 (45%), Gaps = 17/170 (10%)
Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           +K V++GD  VGK+C+++ +    F      TV  ++ +  +   D   V   +WDTAGQ
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV--DGKPVNLGLWDTAGQ 62
Query: 94  ERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLH 152
           E Y  L PL Y         + + SP SF N    W  E++ H  P   + LVG K DL 
Sbjct: 63  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHH-CPHTPILLVGTKLDLR 121
Query: 153 EKRE------------VPAQDGIEYAEKNG-MFFIETSAKTADNINQLFE 189
           + ++            +    G+  A + G + ++E SA T   +  +F+
Sbjct: 122 DDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFD 171

>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With Gdp And Chloride Length = 179

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 78/170 (45%), Gaps = 17/170 (10%)
Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           +K V++GD  VGK+C+++ +    F      TV  ++ +  +   D   V   +WDTAGQ
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV--DGKPVNLGLWDTAGQ 62
Query: 94  ERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLH 152
           E Y  L PL Y         + + SP SF N    W  E+ +H  P   + LVG K DL 
Sbjct: 63  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPHTPILLVGTKLDLR 121
Query: 153 EKRE------------VPAQDGIEYAEKNG-MFFIETSAKTADNINQLFE 189
           + ++            +    G+  A + G + ++E SA T   +  +F+
Sbjct: 122 DDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFD 171

>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp Length = 192

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 78/170 (45%), Gaps = 17/170 (10%)
Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           +K V++GD  VGK+C+++ +    F      TV  ++ +  +   D   V   +WDTAGQ
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV--DGKPVNLGLWDTAGQ 61
Query: 94  ERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLH 152
           E Y  L PL Y         + + SP SF N    W  E+ +H  P   + LVG K DL 
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPHTPILLVGTKLDLR 120
Query: 153 EKRE------------VPAQDGIEYAEKNG-MFFIETSAKTADNINQLFE 189
           + ++            +    G+  A + G + ++E SA T   +  +F+
Sbjct: 121 DDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFD 170

>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 72/148 (48%), Gaps = 4/148 (2%)
Query: 46  KSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYR 105
           KS + ++ ++  F      T+  S+  Q +   D  T   +I DTAGQE Y+A+   Y R
Sbjct: 21  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMR 78
Query: 106 GXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHEKREVPAQDGIE 164
                   + I +  SF     + +++++   S D+ M LVGNK DL   R V ++   +
Sbjct: 79  TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQD 137
Query: 165 YAEKNGMFFIETSAKTADNINQLFEVLI 192
            A   G+ +IETSAKT   +   F  L+
Sbjct: 138 LARSYGIPYIETSAKTRQGVEDAFYTLV 165

>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 72/148 (48%), Gaps = 4/148 (2%)
Query: 46  KSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYR 105
           KS + ++ ++  F      T+  S+  Q +   D  T   +I DTAGQE Y+A+   Y R
Sbjct: 21  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMR 78
Query: 106 GXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHEKREVPAQDGIE 164
                   + I +  SF     + +++++   S D+ M LVGNK DL   R V ++   +
Sbjct: 79  TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQD 137
Query: 165 YAEKNGMFFIETSAKTADNINQLFEVLI 192
            A   G+ +IETSAKT   +   F  L+
Sbjct: 138 LARSYGIPYIETSAKTRQGVEDAFYTLV 165

>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound Forms Length = 167

Iteration: 1
 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 78/159 (49%), Gaps = 3/159 (1%)
Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           K+ +LG   VGKS + ++FV GQF  ++  T+  +F ++ I + +      ++ DTAGQ+
Sbjct: 6   KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTF-TKLITV-NGQEYHLQLVDTAGQD 63
Query: 95  RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWV-KELQKHGSPDIVMALVGNKADLHE 153
            Y+     Y          Y +TS  SF   +    K L   G   I + LVGNK DLH 
Sbjct: 64  EYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM 123
Query: 154 KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
           +R +  ++G   AE     F+E+SAK       +F  +I
Sbjct: 124 ERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRII 162

>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 72/148 (48%), Gaps = 4/148 (2%)
Query: 46  KSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYR 105
           KS + ++ ++  F      T+  S+  Q +   D  T   +I DTAGQE Y+A+   Y R
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEESYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMR 73
Query: 106 GXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHEKREVPAQDGIE 164
                   + I +  SF     + +++++   S D+ M LVGNK DL   R V ++   +
Sbjct: 74  TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQD 132
Query: 165 YAEKNGMFFIETSAKTADNINQLFEVLI 192
            A   G+ +IETSAKT   +   F  L+
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLV 160

>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras Length = 166

Iteration: 1
 Score = 67.8 bits (164), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 72/148 (48%), Gaps = 4/148 (2%)
Query: 46  KSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYR 105
           KS + ++ ++  F      T+  S+  Q +   D  T   +I DTAGQE Y+A+   Y R
Sbjct: 16  KSALTIQLIQNHFVEKYDPTIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMR 73
Query: 106 GXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHEKREVPAQDGIE 164
                   + I +  SF     + +++++   S D+ M LVGNK DL   R V ++   +
Sbjct: 74  TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQD 132
Query: 165 YAEKNGMFFIETSAKTADNINQLFEVLI 192
            A   G+ +IETSAKT   +   F  L+
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLV 160

>pdb|1WQ1|R Chain R, Ras-Rasgap Complex Length = 166

Iteration: 1
 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 72/148 (48%), Gaps = 4/148 (2%)
Query: 46  KSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYR 105
           KS + ++ ++  F      T+  S+  Q +   D  T   +I DTAGQE Y+A+   Y R
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMR 73
Query: 106 GXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHEKREVPAQDGIE 164
                   + I +  SF     + +++++   S D+ M LVGNK DL   R V ++   +
Sbjct: 74  TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQD 132
Query: 165 YAEKNGMFFIETSAKTADNINQLFEVLI 192
            A   G+ +IETSAKT   +   F  L+
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLV 160

>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 72/148 (48%), Gaps = 4/148 (2%)
Query: 46  KSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYR 105
           KS + ++ ++  F      T+  S+  Q +   D  T   +I DTAGQE Y+A+   Y R
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMR 73
Query: 106 GXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHEKREVPAQDGIE 164
                   + I +  SF     + +++++   S D+ M LVGNK DL   R V ++   +
Sbjct: 74  TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQD 132
Query: 165 YAEKNGMFFIETSAKTADNINQLFEVLI 192
            A   G+ +IETSAKT   +   F  L+
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLV 160

>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex With Pde6d Length = 181

Iteration: 1
 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 77/159 (48%), Gaps = 3/159 (1%)
Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           K+ +LG   VGKS + ++FV GQF  +   T+  +F ++ I + +      ++ DTAGQ+
Sbjct: 8   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITV-NGQEYHLQLVDTAGQD 65
Query: 95  RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWV-KELQKHGSPDIVMALVGNKADLHE 153
            Y+     Y          Y +TS  SF   +    K L   G   I + LVGNK DLH 
Sbjct: 66  EYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM 125
Query: 154 KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
           +R +  ++G   AE     F+E+SAK       +F  +I
Sbjct: 126 ERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRII 164

>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With The Ras-interacting Domain Of Ralgds Length = 167

Iteration: 1
 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 72/148 (48%), Gaps = 4/148 (2%)
Query: 46  KSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYR 105
           KS + ++ ++  F      T+  S+  Q +   D  T   +I DTAGQE Y+A+   Y R
Sbjct: 16  KSALTIQLIQNHFVDKYDPTIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMR 73
Query: 106 GXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHEKREVPAQDGIE 164
                   + I +  SF     + +++++   S D+ M LVGNK DL   R V ++   +
Sbjct: 74  TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQD 132
Query: 165 YAEKNGMFFIETSAKTADNINQLFEVLI 192
            A   G+ +IETSAKT   +   F  L+
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLV 160

>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 72/148 (48%), Gaps = 4/148 (2%)
Query: 46  KSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYR 105
           KS + ++ ++  F      T+  S+  Q +   D  T   +I DTAGQE Y+A+   Y R
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMR 73
Query: 106 GXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHEKREVPAQDGIE 164
                   + I +  SF     + +++++   S D+ M LVGNK DL   R V ++   +
Sbjct: 74  TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQD 132
Query: 165 YAEKNGMFFIETSAKTADNINQLFEVLI 192
            A   G+ +IETSAKT   +   F  L+
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLV 160

>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 171

Iteration: 1
 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 72/148 (48%), Gaps = 4/148 (2%)
Query: 46  KSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYR 105
           KS + ++ ++  F      T+  S+  Q +   D  T   +I DTAGQE Y+A+   Y R
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMR 73
Query: 106 GXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHEKREVPAQDGIE 164
                   + I +  SF     + +++++   S D+ M LVGNK DL   R V ++   +
Sbjct: 74  TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQD 132
Query: 165 YAEKNGMFFIETSAKTADNINQLFEVLI 192
            A   G+ +IETSAKT   +   F  L+
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLV 160

>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The Catalytic Domains Of Normal Ras Protein And An Oncogenic Mutant Complexed With Gsp Length = 171

Iteration: 1
 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 72/148 (48%), Gaps = 4/148 (2%)
Query: 46  KSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYR 105
           KS + ++ ++  F      T+  S+  Q +   D  T   +I DTAGQE Y+A+   Y R
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMR 73
Query: 106 GXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHEKREVPAQDGIE 164
                   + I +  SF     + +++++   S D+ M LVGNK DL   R V ++   +
Sbjct: 74  TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQD 132
Query: 165 YAEKNGMFFIETSAKTADNINQLFEVLI 192
            A   G+ +IETSAKT   +   F  L+
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLV 160

>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF Length = 166

Iteration: 1
 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 72/148 (48%), Gaps = 4/148 (2%)
Query: 46  KSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYR 105
           KS + ++ ++  F      T+  S+  Q +   D  T   +I DTAGQE Y+A+   Y R
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDEYMR 73
Query: 106 GXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHEKREVPAQDGIE 164
                   + I +  SF     + +++++   S D+ M LVGNK DL   R V ++   +
Sbjct: 74  TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQD 132
Query: 165 YAEKNGMFFIETSAKTADNINQLFEVLI 192
            A   G+ +IETSAKT   +   F  L+
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLV 160

>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase Length = 166

Iteration: 1
 Score = 67.4 bits (163), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 72/148 (48%), Gaps = 4/148 (2%)
Query: 46  KSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYR 105
           KS + ++ ++  F      T+  S+  Q +   D  T   +I DTAGQE Y+A+   Y R
Sbjct: 16  KSALTIQLIQNHFVDEFDPTIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMR 73
Query: 106 GXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHEKREVPAQDGIE 164
                   + I +  SF     + +++++   S D+ M LVGNK DL   R V ++   +
Sbjct: 74  TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQD 132
Query: 165 YAEKNGMFFIETSAKTADNINQLFEVLI 192
            A   G+ +IETSAKT   +   F  L+
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLV 160

>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With Arfaptin Length = 192

Iteration: 1
 Score = 67.4 bits (163), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 78/170 (45%), Gaps = 17/170 (10%)
Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           +K V++GD  VGK+C+++ +    F      TV  ++ +  +   D   V   +WDTAG 
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV--DGKPVNLGLWDTAGL 61
Query: 94  ERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLH 152
           E Y  L PL Y         + + SP SF N    W  E+ +H  P+  + LVG K DL 
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLR 120
Query: 153 ----------EKREVPA--QDGIEYAEKNGMF-FIETSAKTADNINQLFE 189
                     EK+  P     G+  A++ G   ++E SA T   +  +F+
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 170

>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant Length = 204

Iteration: 1
 Score = 67.4 bits (163), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 78/170 (45%), Gaps = 17/170 (10%)
Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           +K V++GD  VGK+C+++ +    F      TV  ++ +  +   D   V   +WDTAG 
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV--DGKPVNLGLWDTAGL 88
Query: 94  ERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLH 152
           E Y  L PL Y         + + SP SF N    W  E++ H  P+  + LVG K DL 
Sbjct: 89  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHH-CPNTPIILVGTKLDLR 147
Query: 153 ----------EKREVPA--QDGIEYAEKNGMF-FIETSAKTADNINQLFE 189
                     EK+  P     G+  A++ G   ++E SA T   +  +F+
Sbjct: 148 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 197

>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX Length = 192

Iteration: 1
 Score = 67.4 bits (163), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 78/170 (45%), Gaps = 17/170 (10%)
Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           +K V++GD  VGK+C+++ +    F      TV  ++ +  +   D   V   +WDTAG 
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV--DGKPVNLGLWDTAGL 61
Query: 94  ERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLH 152
           E Y  L PL Y         + + SP SF N    W  E+ +H  P+  + LVG K DL 
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLR 120
Query: 153 ----------EKREVPA--QDGIEYAEKNGMF-FIETSAKTADNINQLFE 189
                     EK+  P     G+  A++ G   ++E SA T   +  +F+
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 170

>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp Length = 169

Iteration: 1
 Score = 67.4 bits (163), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 77/159 (48%), Gaps = 3/159 (1%)
Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           K+ +LG   VGKS + ++FV GQF  +   T+  +F ++ I + +      ++ DTAGQ+
Sbjct: 3   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITV-NGQEYHLQLVDTAGQD 60
Query: 95  RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWV-KELQKHGSPDIVMALVGNKADLHE 153
            Y+     Y          Y +TS  SF   +    K L   G   I + LVGNK DLH 
Sbjct: 61  EYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM 120
Query: 154 KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
           +R +  ++G   AE     F+E+SAK       +F  +I
Sbjct: 121 ERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRII 159

>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1 Length = 180

Iteration: 1
 Score = 67.4 bits (163), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 78/170 (45%), Gaps = 17/170 (10%)
Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           +K V++GD  VGK+C+++ +    F      TV  ++ +  +   D   V   +WDTAG 
Sbjct: 7   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV--DGKPVNLGLWDTAGL 64
Query: 94  ERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLH 152
           E Y  L PL Y         + + SP SF N    W  E++ H  P+  + LVG K DL 
Sbjct: 65  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHH-CPNTPIILVGTKLDLR 123
Query: 153 ----------EKREVPA--QDGIEYAEKNGMF-FIETSAKTADNINQLFE 189
                     EK+  P     G+  A++ G   ++E SA T   +  +F+
Sbjct: 124 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 173

>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp Length = 177

Iteration: 1
 Score = 67.0 bits (162), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 77/159 (48%), Gaps = 3/159 (1%)
Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           K+ +LG   VGKS + ++FV GQF  +   T+  +F ++ I + +      ++ DTAGQ+
Sbjct: 8   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITV-NGQEYHLQLVDTAGQD 65
Query: 95  RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWV-KELQKHGSPDIVMALVGNKADLHE 153
            Y+     Y          Y +TS  SF   +    K L   G   I + LVGNK DLH 
Sbjct: 66  EYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM 125
Query: 154 KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
           +R +  ++G   AE     F+E+SAK       +F  +I
Sbjct: 126 ERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRII 164

>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 67.0 bits (162), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 72/148 (48%), Gaps = 4/148 (2%)
Query: 46  KSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYR 105
           KS + ++ ++  F      T+  S+  Q +   D  T   +I DTAGQE Y+A+   Y R
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMR 73
Query: 106 GXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHEKREVPAQDGIE 164
                   + I +  SF     + +++++   S D+ M LVGN+ DL   R V ++   +
Sbjct: 74  TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNRCDL-AARTVESRQAQD 132
Query: 165 YAEKNGMFFIETSAKTADNINQLFEVLI 192
            A   G+ +IETSAKT   +   F  L+
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLV 160

>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem Length = 211

Iteration: 1
 Score = 67.0 bits (162), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 59/194 (30%), Positives = 93/194 (47%), Gaps = 15/194 (7%)
Query: 11  SSGQSGGLNNL-------ENAGSSDAKNLRVKLVLLGDSGVGKSCIVLRF--VRGQFDPT 61
           SSG   G  NL       ++  SS++ N   ++VL+G+ GVGKS +   F  V    D  
Sbjct: 8   SSGVDLGTENLYFQSMSTDSVISSESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD 67
Query: 62  SKVTVGASFLSQTIAL--QDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSP 119
            +V +G     +T+ +  + +T +  ++W+  G+  +  L     +        Y IT  
Sbjct: 68  CEV-LGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDR 124
Query: 120 DSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSA 178
            SF KA     +L++   + DI + LVGNK+DL   REV   +G   A      FIETSA
Sbjct: 125 ASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSA 184
Query: 179 KTADNINQLFEVLI 192
               N+ +LFE ++
Sbjct: 185 AVQHNVKELFEGIV 198

>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp Length = 172

Iteration: 1
 Score = 67.0 bits (162), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 72/148 (48%), Gaps = 4/148 (2%)
Query: 46  KSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYR 105
           KS + ++ ++  F      ++  S+  Q +   D  T   +I DTAGQE Y+A+   Y R
Sbjct: 22  KSALTIQLIQNHFVDEYDPSIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMR 79
Query: 106 GXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHEKREVPAQDGIE 164
                   + I +  SF     + +++++   S D+ M LVGNK DL   R V ++   +
Sbjct: 80  TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQD 138
Query: 165 YAEKNGMFFIETSAKTADNINQLFEVLI 192
            A   G+ +IETSAKT   +   F  L+
Sbjct: 139 LARSYGIPYIETSAKTRQGVEDAFYTLV 166

>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2 Wildtype Length = 332

Iteration: 1
 Score = 67.0 bits (162), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 82/175 (46%), Gaps = 18/175 (10%)
Query: 29  AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIW 88
           AK L +K V++GD  VGK+C+++ +    F      TV  ++ +  +   D   V   +W
Sbjct: 152 AKEL-IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV--DGKPVNLGLW 208
Query: 89  DTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQ-YWVKELQKHGSPDIVMALVGN 147
           DTAG E Y  L PL Y         + + SP SF+  +  W  E+ +H  P+  + LVG 
Sbjct: 209 DTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEV-RHHCPNTPIILVGT 267
Query: 148 KADLH----------EKREVPA--QDGIEYAEKNGMF-FIETSAKTADNINQLFE 189
           K DL           EK+  P     G+  A++ G   ++E SA T   +  +F+
Sbjct: 268 KLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 322

>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450m Mutant Length = 332

Iteration: 1
 Score = 66.6 bits (161), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 82/175 (46%), Gaps = 18/175 (10%)
Query: 29  AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIW 88
           AK L +K V++GD  VGK+C+++ +    F      TV  ++ +  +   D   V   +W
Sbjct: 152 AKEL-IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV--DGKPVNLGLW 208
Query: 89  DTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQ-YWVKELQKHGSPDIVMALVGN 147
           DTAG E Y  L PL Y         + + SP SF+  +  W  E+ +H  P+  + LVG 
Sbjct: 209 DTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEV-RHHCPNTPIILVGT 267
Query: 148 KADLH----------EKREVPA--QDGIEYAEKNGMF-FIETSAKTADNINQLFE 189
           K DL           EK+  P     G+  A++ G   ++E SA T   +  +F+
Sbjct: 268 KLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 322

>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450a Mutant Length = 332

Iteration: 1
 Score = 66.6 bits (161), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 82/175 (46%), Gaps = 18/175 (10%)
Query: 29  AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIW 88
           AK L +K V++GD  VGK+C+++ +    F      TV  ++ +  +   D   V   +W
Sbjct: 152 AKEL-IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV--DGKPVNLGLW 208
Query: 89  DTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQ-YWVKELQKHGSPDIVMALVGN 147
           DTAG E Y  L PL Y         + + SP SF+  +  W  E+ +H  P+  + LVG 
Sbjct: 209 DTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEV-RHHCPNTPIILVGT 267
Query: 148 KADLH----------EKREVPA--QDGIEYAEKNGMF-FIETSAKTADNINQLFE 189
           K DL           EK+  P     G+  A++ G   ++E SA T   +  +F+
Sbjct: 268 KLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 322

>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of Ras Length = 166

Iteration: 1
 Score = 66.6 bits (161), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 72/148 (48%), Gaps = 4/148 (2%)
Query: 46  KSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYR 105
           K+ + ++ ++  F      T+  S+  Q +   D  T   +I DTAGQE Y+A+   Y R
Sbjct: 16  KNALTIQLIQNHFVDEYDPTIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMR 73
Query: 106 GXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHEKREVPAQDGIE 164
                   + I +  SF     + +++++   S D+ M LVGNK DL   R V ++   +
Sbjct: 74  TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQD 132
Query: 165 YAEKNGMFFIETSAKTADNINQLFEVLI 192
            A   G+ +IETSAKT   +   F  L+
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLV 160

>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser (T35s) Complexed With Guanosine-5'-[b,G-Imido] Triphosphate Length = 166

Iteration: 1
 Score = 66.6 bits (161), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 72/148 (48%), Gaps = 4/148 (2%)
Query: 46  KSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYR 105
           KS + ++ ++  F      ++  S+  Q +   D  T   +I DTAGQE Y+A+   Y R
Sbjct: 16  KSALTIQLIQNHFVDEYDPSIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMR 73
Query: 106 GXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHEKREVPAQDGIE 164
                   + I +  SF     + +++++   S D+ M LVGNK DL   R V ++   +
Sbjct: 74  TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQD 132
Query: 165 YAEKNGMFFIETSAKTADNINQLFEVLI 192
            A   G+ +IETSAKT   +   F  L+
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLV 160

>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form Length = 166

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 71/148 (47%), Gaps = 4/148 (2%)
Query: 46  KSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYR 105
           KS + ++ ++  F      T+  S+  Q +   D  T   +I DT GQE Y+A+   Y R
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVI--DGETCLLDILDTGGQEEYSAMRDQYMR 73
Query: 106 GXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHEKREVPAQDGIE 164
                   + I +  SF     + +++++   S D+ M LVGNK DL   R V ++   +
Sbjct: 74  TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQD 132
Query: 165 YAEKNGMFFIETSAKTADNINQLFEVLI 192
            A   G+ +IETSAKT   +   F  L+
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLV 160

>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 71/148 (47%), Gaps = 4/148 (2%)
Query: 46  KSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYR 105
           KS + ++ ++  F      T+  S+  Q +   D  T   +I DTAG E Y+A+   Y R
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVI--DGETCLLDILDTAGHEEYSAMRDQYMR 73
Query: 106 GXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHEKREVPAQDGIE 164
                   + I +  SF     + +++++   S D+ M LVGNK DL   R V ++   +
Sbjct: 74  TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQD 132
Query: 165 YAEKNGMFFIETSAKTADNINQLFEVLI 192
            A   G+ +IETSAKT   +   F  L+
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLV 160

>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 71/148 (47%), Gaps = 4/148 (2%)
Query: 46  KSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYR 105
           KS + ++ ++  F      T+  S+  Q +   D  T   +I DT GQE Y+A+   Y R
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVI--DGETCLLDILDTTGQEEYSAMRDQYMR 73
Query: 106 GXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHEKREVPAQDGIE 164
                   + I +  SF     + +++++   S D+ M LVGNK DL   R V ++   +
Sbjct: 74  TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQD 132
Query: 165 YAEKNGMFFIETSAKTADNINQLFEVLI 192
            A   G+ +IETSAKT   +   F  L+
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLV 160

>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp Length = 166

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 72/148 (48%), Gaps = 4/148 (2%)
Query: 46  KSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYR 105
           KS + ++ ++  F      T+  S+  Q +   D  T   +I DTAG+E Y+A+   Y R
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVI--DGETCLLDILDTAGKEEYSAMRDQYMR 73
Query: 106 GXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHEKREVPAQDGIE 164
                   + I +  SF     + +++++   S D+ M LVGNK DL   R V ++   +
Sbjct: 74  TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQD 132
Query: 165 YAEKNGMFFIETSAKTADNINQLFEVLI 192
            A   G+ +IETSAKT   +   F  L+
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLV 160

>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By Isoleucine Length = 166

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 71/148 (47%), Gaps = 4/148 (2%)
Query: 46  KSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYR 105
           KS + ++ ++  F      T+  S+  Q +   D      +I DTAGQE Y+A+   Y R
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVI--DGEICLLDILDTAGQEEYSAMRDQYMR 73
Query: 106 GXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHEKREVPAQDGIE 164
                   + I +  SF     + +++++   S D+ M LVGNK DL   R V ++   +
Sbjct: 74  TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQD 132
Query: 165 YAEKNGMFFIETSAKTADNINQLFEVLI 192
            A   G+ +IETSAKT   +   F  L+
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLV 160

>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 71/148 (47%), Gaps = 4/148 (2%)
Query: 46  KSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYR 105
           KS + ++ ++  F      T+  S+  Q +   D  T   +I DTAG E Y+A+   Y R
Sbjct: 21  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVI--DGETCLLDILDTAGLEEYSAMRDQYMR 78
Query: 106 GXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHEKREVPAQDGIE 164
                   + I +  SF     + +++++   S D+ M LVGNK DL   R V ++   +
Sbjct: 79  TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQD 137
Query: 165 YAEKNGMFFIETSAKTADNINQLFEVLI 192
            A   G+ +IETSAKT   +   F  L+
Sbjct: 138 LARSYGIPYIETSAKTRQGVEDAFYTLV 165

>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A Constitutively Activated Small G Protein Length = 205

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 86/177 (48%), Gaps = 20/177 (11%)
Query: 30  KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQ-DSTTVKFEIW 88
           +N++ K+V++GDS  GK+ ++  F +  F      TV   F + T + + D+  ++  +W
Sbjct: 25  QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV---FENYTASFEIDTQRIELSLW 81
Query: 89  DTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKA-QYWVKELQKHGSPDIVMALVGN 147
           DT+G   Y  + PL Y         +DI+ P++ +   + W  E+Q+   P+  M LVG 
Sbjct: 82  DTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF-CPNTKMLLVGC 140
Query: 148 KADL------------HEKREVPAQDGIEYAEKNG-MFFIETSAKTADN-INQLFEV 190
           K+DL            H +  V    G   A++ G   +IE SA  ++N +  +F V
Sbjct: 141 KSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHV 197

>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a Mutant Length = 166

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 71/148 (47%), Gaps = 4/148 (2%)
Query: 46  KSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYR 105
           KS + ++ ++  F      T+  S+  Q +   D  T   +I DTA QE Y+A+   Y R
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVI--DGETCLLDILDTAAQEEYSAMRDQYMR 73
Query: 106 GXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHEKREVPAQDGIE 164
                   + I +  SF     + +++++   S D+ M LVGNK DL   R V ++   +
Sbjct: 74  TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDL-AARTVESRQAQD 132
Query: 165 YAEKNGMFFIETSAKTADNINQLFEVLI 192
            A   G+ +IETSAKT   +   F  L+
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLV 160

>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant Length = 167

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 71/148 (47%), Gaps = 4/148 (2%)
Query: 46  KSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYR 105
           KS + ++ ++  F      T+  S+  Q +   D  T   +I DTA QE Y+A+   Y R
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVI--DGETCLLDILDTAAQEEYSAMRDQYMR 73
Query: 106 GXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHEKREVPAQDGIE 164
                   + I +  SF     + +++++   S D+ M LVGNK DL   R V ++   +
Sbjct: 74  TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDL-AARTVESRQAQD 132
Query: 165 YAEKNGMFFIETSAKTADNINQLFEVLI 192
            A   G+ +IETSAKT   +   F  L+
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLV 160

>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS Length = 184

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 86/177 (48%), Gaps = 20/177 (11%)
Query: 30  KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQ-DSTTVKFEIW 88
           +N++ K+V++GDS  GK+ ++  F +  F      TV   F + T + + D+  ++  +W
Sbjct: 4   QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV---FENYTASFEIDTQRIELSLW 60
Query: 89  DTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKA-QYWVKELQKHGSPDIVMALVGN 147
           DT+G   Y  + PL Y         +DI+ P++ +   + W  E+Q+   P+  M LVG 
Sbjct: 61  DTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF-CPNTKMLLVGC 119
Query: 148 KADL------------HEKREVPAQDGIEYAEKNG-MFFIETSAKTADN-INQLFEV 190
           K+DL            H +  V    G   A++ G   +IE SA  ++N +  +F V
Sbjct: 120 KSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHV 176

>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 71/148 (47%), Gaps = 4/148 (2%)
Query: 46  KSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYR 105
           KS + ++ ++  F      T+  S+  Q +   D  T   +I DTAG E Y+A+   Y R
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVI--DGETCLLDILDTAGLEEYSAMRDQYMR 73
Query: 106 GXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHEKREVPAQDGIE 164
                   + I +  SF     + +++++   S D+ M LVGNK DL   R V ++   +
Sbjct: 74  TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQD 132
Query: 165 YAEKNGMFFIETSAKTADNINQLFEVLI 192
            A   G+ +IETSAKT   +   F  L+
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLV 160

>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp Length = 166

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 71/148 (47%), Gaps = 4/148 (2%)
Query: 46  KSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYR 105
           KS + ++ ++  F      T+  S+  Q +   D  T   +I DTAG E Y+A+   Y R
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVI--DGETCLLDILDTAGVEEYSAMRDQYMR 73
Query: 106 GXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHEKREVPAQDGIE 164
                   + I +  SF     + +++++   S D+ M LVGNK DL   R V ++   +
Sbjct: 74  TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQD 132
Query: 165 YAEKNGMFFIETSAKTADNINQLFEVLI 192
            A   G+ +IETSAKT   +   F  L+
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLV 160

>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form Length = 166

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 71/148 (47%), Gaps = 4/148 (2%)
Query: 46  KSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYR 105
           KS + ++ ++  F      T+  S+  Q +   D  T   +I DTAG E Y+A+   Y R
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVI--DGETCLLDILDTAGGEEYSAMRDQYMR 73
Query: 106 GXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHEKREVPAQDGIE 164
                   + I +  SF     + +++++   S D+ M LVGNK DL   R V ++   +
Sbjct: 74  TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQD 132
Query: 165 YAEKNGMFFIETSAKTADNINQLFEVLI 192
            A   G+ +IETSAKT   +   F  L+
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLV 160

>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex With Cdc42 (T17n Mutant) Length = 195

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/183 (30%), Positives = 85/183 (46%), Gaps = 18/183 (9%)
Query: 25  GSSDAKNLR-VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTV 83
           GSS +  ++ +K V++GD  VGK+C+++ +   +F      TV  ++    +   +  T+
Sbjct: 1   GSSGSSGMQTIKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTL 60
Query: 84  KFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVM 142
              ++DTAGQE Y  L PL Y         + + SP SF N  + WV E+  H  P    
Sbjct: 61  G--LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CPKTPF 117
Query: 143 ALVGNKADLH------EKREVPAQDGI--EYAEK-----NGMFFIETSAKTADNINQLFE 189
            LVG + DL       EK     Q  I  E AEK       + ++E SA T   +  +F+
Sbjct: 118 LLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFD 177
Query: 190 VLI 192
             I
Sbjct: 178 EAI 180

>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 200

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 86/177 (48%), Gaps = 20/177 (11%)
Query: 30  KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQ-DSTTVKFEIW 88
           +N++ K+V++GDS  GK+ ++  F +  F      TV   F + T + + D+  ++  +W
Sbjct: 20  QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV---FENYTASFEIDTQRIELSLW 76
Query: 89  DTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKA-QYWVKELQKHGSPDIVMALVGN 147
           DT+G   Y  + PL Y         +DI+ P++ +   + W  E+Q+   P+  M LVG 
Sbjct: 77  DTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF-CPNTKMLLVGC 135
Query: 148 KADL------------HEKREVPAQDGIEYAEKNG-MFFIETSAKTADN-INQLFEV 190
           K+DL            H +  V    G   A++ G   +IE SA  ++N +  +F V
Sbjct: 136 KSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHV 192

>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp Length = 166

Iteration: 1
 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 71/148 (47%), Gaps = 4/148 (2%)
Query: 46  KSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYR 105
           KS + ++ ++  F      T+  S+  Q +   D  T   +I DTAG E Y+A+   Y R
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVI--DGETCLLDILDTAGIEEYSAMRDQYMR 73
Query: 106 GXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHEKREVPAQDGIE 164
                   + I +  SF     + +++++   S D+ M LVGNK DL   R V ++   +
Sbjct: 74  TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQD 132
Query: 165 YAEKNGMFFIETSAKTADNINQLFEVLI 192
            A   G+ +IETSAKT   +   F  L+
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLV 160

>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g Length = 166

Iteration: 1
 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 71/148 (47%), Gaps = 4/148 (2%)
Query: 46  KSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYR 105
           KS + ++ ++  F      T+  S+  Q +   D  T   +I DTAG E Y+A+   Y R
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVI--DGETXLLDILDTAGGEEYSAMRDQYMR 73
Query: 106 GXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHEKREVPAQDGIE 164
                   + I +  SF     + +++++   S D+ M LVGNK DL   R V ++   +
Sbjct: 74  TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQD 132
Query: 165 YAEKNGMFFIETSAKTADNINQLFEVLI 192
            A   G+ +IETSAKT   +   F  L+
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLV 160

>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-specific Nucleotide Exchange Factor Sos Length = 166

Iteration: 1
 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 71/148 (47%), Gaps = 4/148 (2%)
Query: 46  KSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYR 105
           KS + ++ ++  F      T+  S+  Q +   D  T   +I DTAGQE  +A+   Y R
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVI--DGETCLLDILDTAGQEEASAMRDQYMR 73
Query: 106 GXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHEKREVPAQDGIE 164
                   + I +  SF     + +++++   S D+ M LVGNK DL   R V ++   +
Sbjct: 74  TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQD 132
Query: 165 YAEKNGMFFIETSAKTADNINQLFEVLI 192
            A   G+ +IETSAKT   +   F  L+
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLV 160

>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex Length = 182

Iteration: 1
 Score = 63.9 bits (154), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 78/170 (45%), Gaps = 17/170 (10%)
Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           +K V++GD  VGK+C+++ +   +F      TV  ++    +   +  T+   ++DTAGQ
Sbjct: 8   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLG--LFDTAGQ 65
Query: 94  ERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLH 152
           E Y  L PL Y         + + SP SF N  + WV E+  H  P     LVG + DL 
Sbjct: 66  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CPKTPFLLVGTQIDLR 124
Query: 153 ------EKREVPAQDGI--EYAEK-----NGMFFIETSAKTADNINQLFE 189
                 EK     Q  I  E AEK       + ++E SA T   +  +F+
Sbjct: 125 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFD 174

>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain Sopb In Complex With Cdc42 Length = 193

Iteration: 1
 Score = 63.9 bits (154), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 78/170 (45%), Gaps = 17/170 (10%)
Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           +K V++GD  VGK+C+++ +   +F      TV  ++    +   +  T+   ++DTAGQ
Sbjct: 14  IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLG--LFDTAGQ 71
Query: 94  ERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLH 152
           E Y  L PL Y         + + SP SF N  + WV E+  H  P     LVG + DL 
Sbjct: 72  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CPKTPFLLVGTQIDLR 130
Query: 153 ------EKREVPAQDGI--EYAEK-----NGMFFIETSAKTADNINQLFE 189
                 EK     Q  I  E AEK       + ++E SA T   +  +F+
Sbjct: 131 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFD 180

>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex Length = 194

Iteration: 1
 Score = 63.9 bits (154), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 78/170 (45%), Gaps = 17/170 (10%)
Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           +K V++GD  VGK+C+++ +   +F      TV  ++    +   +  T+   ++DTAGQ
Sbjct: 7   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLG--LFDTAGQ 64
Query: 94  ERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLH 152
           E Y  L PL Y         + + SP SF N  + WV E+  H  P     LVG + DL 
Sbjct: 65  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CPKTPFLLVGTQIDLR 123
Query: 153 ------EKREVPAQDGI--EYAEK-----NGMFFIETSAKTADNINQLFE 189
                 EK     Q  I  E AEK       + ++E SA T   +  +F+
Sbjct: 124 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFD 173

>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of The Salmonella Typhimurium Sope Toxin And Human Cdc42 Length = 180

Iteration: 1
 Score = 63.9 bits (154), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 78/170 (45%), Gaps = 17/170 (10%)
Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           +K V++GD  VGK+C+++ +   +F      TV  ++    +   +  T+   ++DTAGQ
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLG--LFDTAGQ 63
Query: 94  ERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLH 152
           E Y  L PL Y         + + SP SF N  + WV E+  H  P     LVG + DL 
Sbjct: 64  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CPKTPFLLVGTQIDLR 122
Query: 153 ------EKREVPAQDGI--EYAEK-----NGMFFIETSAKTADNINQLFE 189
                 EK     Q  I  E AEK       + ++E SA T   +  +F+
Sbjct: 123 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFD 172

>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42. Length = 190

Iteration: 1
 Score = 63.5 bits (153), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 78/170 (45%), Gaps = 17/170 (10%)
Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           +K V++GD  VGK+C+++ +   +F      TV  ++    +   +  T+   ++DTAGQ
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLG--LFDTAGQ 63
Query: 94  ERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLH 152
           E Y  L PL Y         + + SP SF N  + WV E+  H  P     LVG + DL 
Sbjct: 64  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CPKTPFLLVGTQIDLR 122
Query: 153 ------EKREVPAQDGI--EYAEK-----NGMFFIETSAKTADNINQLFE 189
                 EK     Q  I  E AEK       + ++E SA T   +  +F+
Sbjct: 123 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFD 172

>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX. Length = 191

Iteration: 1
 Score = 63.5 bits (153), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 78/170 (45%), Gaps = 17/170 (10%)
Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           +K V++GD  VGK+C+++ +   +F      TV  ++    +   +  T+   ++DTAGQ
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLG--LFDTAGQ 61
Query: 94  ERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLH 152
           E Y  L PL Y         + + SP SF N  + WV E+  H  P     LVG + DL 
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CPKTPFLLVGTQIDLR 120
Query: 153 ------EKREVPAQDGI--EYAEK-----NGMFFIETSAKTADNINQLFE 189
                 EK     Q  I  E AEK       + ++E SA T   +  +F+
Sbjct: 121 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFD 170

>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The Crib Domain Of Human P21-Activated Kinase 6 (Pak6) Length = 192

Iteration: 1
 Score = 63.5 bits (153), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 78/170 (45%), Gaps = 17/170 (10%)
Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           +K V++GD  VGK+C+++ +   +F      TV  ++    +   +  T+   ++DTAGQ
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLG--LFDTAGQ 62
Query: 94  ERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLH 152
           E Y  L PL Y         + + SP SF N  + WV E+  H  P     LVG + DL 
Sbjct: 63  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CPKTPFLLVGTQIDLR 121
Query: 153 ------EKREVPAQDGI--EYAEK-----NGMFFIETSAKTADNINQLFE 189
                 EK     Q  I  E AEK       + ++E SA T   +  +F+
Sbjct: 122 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFD 171

>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures Length = 194

Iteration: 1
 Score = 63.5 bits (153), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 78/170 (45%), Gaps = 17/170 (10%)
Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           +K V++GD  VGK+C+++ +   +F      TV  ++    +   +  T+   ++DTAGQ
Sbjct: 11  IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLG--LFDTAGQ 68
Query: 94  ERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLH 152
           E Y  L PL Y         + + SP SF N  + WV E+  H  P     LVG + DL 
Sbjct: 69  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CPKTPFLLVGTQIDLR 127
Query: 153 ------EKREVPAQDGI--EYAEK-----NGMFFIETSAKTADNINQLFE 189
                 EK     Q  I  E AEK       + ++E SA T   +  +F+
Sbjct: 128 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFD 177

>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is Required Length = 189

Iteration: 1
 Score = 63.5 bits (153), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 78/170 (45%), Gaps = 17/170 (10%)
Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           +K V++GD  VGK+C+++ +   +F      TV  ++    +   +  T+   ++DTAGQ
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLG--LFDTAGQ 61
Query: 94  ERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLH 152
           E Y  L PL Y         + + SP SF N  + WV E+  H  P     LVG + DL 
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CPKTPFLLVGTQIDLR 120
Query: 153 ------EKREVPAQDGI--EYAEK-----NGMFFIETSAKTADNINQLFE 189
                 EK     Q  I  E AEK       + ++E SA T   +  +F+
Sbjct: 121 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFD 170

>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN Complex With The Placental Isoform Of Human Cdc42 Length = 188

Iteration: 1
 Score = 63.5 bits (153), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 78/170 (45%), Gaps = 17/170 (10%)
Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           +K V++GD  VGK+C+++ +   +F      TV  ++    +   +  T+   ++DTAGQ
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLG--LFDTAGQ 61
Query: 94  ERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLH 152
           E Y  L PL Y         + + SP SF N  + WV E+  H  P     LVG + DL 
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CPKTPFLLVGTQIDLR 120
Query: 153 ------EKREVPAQDGI--EYAEK-----NGMFFIETSAKTADNINQLFE 189
                 EK     Q  I  E AEK       + ++E SA T   +  +F+
Sbjct: 121 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFD 170

>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In Complex With The Multifunctional Regulator Rhogdi Length = 191

Iteration: 1
 Score = 63.5 bits (153), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 79/173 (45%), Gaps = 17/173 (9%)
Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           +K V++GD  VGK+C+++ +   +F      TV  ++    +   +  T+   ++DTAGQ
Sbjct: 7   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLG--LFDTAGQ 64
Query: 94  ERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLH 152
           E Y  L PL Y         + + SP SF N  + WV E+  H  P     LVG + DL 
Sbjct: 65  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CPKTPFLLVGTQIDLR 123
Query: 153 ------EKREVPAQDGI--EYAEK-----NGMFFIETSAKTADNINQLFEVLI 192
                 EK     Q  I  E AEK       + ++E SA T   +  +F+  I
Sbjct: 124 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 176

>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide Derived From P-21 Activated Kinase, Nmr, 20 Structures Length = 178

Iteration: 1
 Score = 63.5 bits (153), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 78/170 (45%), Gaps = 17/170 (10%)
Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           +K V++GD  VGK+C+++ +   +F      TV  ++    +   +  T+   ++DTAGQ
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLG--LFDTAGQ 61
Query: 94  ERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLH 152
           E Y  L PL Y         + + SP SF N  + WV E+  H  P     LVG + DL 
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CPKTPFLLVGTQIDLR 120
Query: 153 ------EKREVPAQDGI--EYAEK-----NGMFFIETSAKTADNINQLFE 189
                 EK     Q  I  E AEK       + ++E SA T   +  +F+
Sbjct: 121 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFD 170

>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase Binding Domain Of Wasp Length = 179

Iteration: 1
 Score = 63.5 bits (153), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 78/170 (45%), Gaps = 17/170 (10%)
Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           +K V++GD  VGK+C+++ +   +F      TV  ++    +   +  T+   ++DTAGQ
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLG--LFDTAGQ 61
Query: 94  ERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLH 152
           E Y  L PL Y         + + SP SF N  + WV E+  H  P     LVG + DL 
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CPKTPFLLVGTQIDLR 120
Query: 153 ------EKREVPAQDGI--EYAEK-----NGMFFIETSAKTADNINQLFE 189
                 EK     Q  I  E AEK       + ++E SA T   +  +F+
Sbjct: 121 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFD 170

>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp Form Length = 191

Iteration: 1
 Score = 63.2 bits (152), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 78/170 (45%), Gaps = 17/170 (10%)
Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           +K V++GD  VGK+C+++ +   +F      TV  ++    +   +  T+   ++DTAGQ
Sbjct: 4   IKCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLG--LFDTAGQ 61
Query: 94  ERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLH 152
           E Y  L PL Y         + + SP SF N  + WV E+  H  P     LVG + DL 
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CPKTPFLLVGTQIDLR 120
Query: 153 ------EKREVPAQDGI--EYAEK-----NGMFFIETSAKTADNINQLFE 189
                 EK     Q  I  E AEK       + ++E SA T   +  +F+
Sbjct: 121 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFD 170

>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens) Length = 177

Iteration: 1
 Score = 63.2 bits (152), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 78/170 (45%), Gaps = 17/170 (10%)
Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           +K V++GD  VGK+C+++ +   +F      TV  ++    +   +  T+   ++DTAGQ
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLG--LFDTAGQ 61
Query: 94  ERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLH 152
           E Y  L PL Y         + + SP SF N  + WV E+  H  P     LVG + DL 
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CPKTPFLLVGTQIDLR 120
Query: 153 ------EKREVPAQDGI--EYAEK-----NGMFFIETSAKTADNINQLFE 189
                 EK     Q  I  E AEK       + ++E SA T   +  +F+
Sbjct: 121 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFD 170

>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With Cdc42-Gmppnp Length = 178

Iteration: 1
 Score = 63.2 bits (152), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 78/170 (45%), Gaps = 17/170 (10%)
Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           +K V++GD  VGK+C+++ +   +F      TV  ++    +   +  T+   ++DTAGQ
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLG--LFDTAGQ 61
Query: 94  ERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLH 152
           E Y  L PL Y         + + SP SF N  + WV E+  H  P     LVG + DL 
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CPKTPFLLVGTQIDLR 120
Query: 153 ------EKREVPAQDGI--EYAEK-----NGMFFIETSAKTADNINQLFE 189
                 EK     Q  I  E AEK       + ++E SA T   +  +F+
Sbjct: 121 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFD 170

>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex Length = 194

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 84/173 (48%), Gaps = 19/173 (10%)
Query: 32  LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASF-LSQTIALQDSTTVKFEIWDT 90
           L +K V++GD  VGK+C+++ +    F      TV   + +S T+           ++DT
Sbjct: 17  LMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVG---GKQYLLGLYDT 73
Query: 91  AGQERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKA 149
           AGQE Y  L PL Y         + + +P SF N  + WV EL+++ +P++   L+G + 
Sbjct: 74  AGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY-APNVPFLLIGTQI 132
Query: 150 DLHE------------KREVPAQDGIEYAEKNG-MFFIETSAKTADNINQLFE 189
           DL +            ++ +  + G + A++ G   ++E SA T   +  +F+
Sbjct: 133 DLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFD 185

>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp Length = 174

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 81/167 (48%), Gaps = 8/167 (4%)
Query: 31  NLRVKLVLLGDSGVGKSCIVLRF--VRGQFDPTSKVTVGASFLSQTIAL--QDSTTVKFE 86
           N   ++VL+G+ GVGKS +   F  V    D   +V +G     +T+ +  + +T +  +
Sbjct: 4   NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEV-LGEDTYERTLMVDGESATIILLD 62
Query: 87  IWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALV 145
           +W+  G+  +  L     +        Y IT   SF KA     +L++   + DI + LV
Sbjct: 63  MWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILV 120
Query: 146 GNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
           GNK+DL   REV   +G   A      FIETSA    N+ +LFE ++
Sbjct: 121 GNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIV 167

>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 80/163 (49%), Gaps = 8/163 (4%)
Query: 35  KLVLLGDSGVGKSCIVLRF--VRGQFDPTSKVTVGASFLSQTIAL--QDSTTVKFEIWDT 90
           ++VL+G+ GVGKS +   F  V    D   +V +G     +T+ +  + +T +  ++W+ 
Sbjct: 8   RVVLIGEQGVGKSTLANIFAGVHDSMDSDXEV-LGEDTYERTLMVDGESATIILLDMWEN 66
Query: 91  AGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKA 149
            G+  +  L     +        Y IT   SF KA     +L++   + DI + LVGNK+
Sbjct: 67  KGENEW--LHDHXMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKS 124
Query: 150 DLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
           DL   REV   +G   A      FIETSA    N+ +LFE ++
Sbjct: 125 DLVRXREVSVSEGRAXAVVFDCKFIETSAAVQHNVKELFEGIV 167

>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex Length = 190

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 77/170 (45%), Gaps = 17/170 (10%)
Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           +K V++GD  VGK+C+++ +   +F P+  V       + T+ +         ++DTAGQ
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKF-PSEYVPTVFDNYAVTVXI-GGEPYTLGLFDTAGQ 61
Query: 94  ERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLH 152
           E Y  L PL Y         + + SP SF N  + WV E+  H  P     LVG + DL 
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CPKTPFLLVGTQIDLR 120
Query: 153 ------EKREVPAQDGI--EYAEK-----NGMFFIETSAKTADNINQLFE 189
                 EK     Q  I  E AEK       + ++E SA T   +  +F+
Sbjct: 121 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFD 170

>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 80/163 (49%), Gaps = 8/163 (4%)
Query: 35  KLVLLGDSGVGKSCIVLRF--VRGQFDPTSKVTVGASFLSQTIAL--QDSTTVKFEIWDT 90
           ++VL+G+ GVGKS +   F  V    D   +V +G     +T+ +  + +T +  ++W+ 
Sbjct: 8   RVVLIGEQGVGKSTLANIFAGVHDSMDSDXEV-LGEDTYERTLMVDGESATIILLDMWEN 66
Query: 91  AGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKA 149
            G+  +  L     +        Y IT   SF KA     +L++   + DI + LVGNK+
Sbjct: 67  KGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKS 124
Query: 150 DLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
           DL   REV   +G   A      FIETSA    N+ +LFE ++
Sbjct: 125 DLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIV 167

>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The Inactive Gdp Bound State Length = 199

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 76/150 (50%), Gaps = 5/150 (3%)
Query: 46  KSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYR 105
           KS +VLRFV+G F  T   T+  ++  Q I+  D +    +I DT G  ++ A+  L   
Sbjct: 21  KSSLVLRFVKGTFRDTYIPTIEDTY-RQVISC-DKSVCTLQITDTTGSHQFPAMQRLSIS 78
Query: 106 GXXXXXXXYDITSPDSFNKAQYWVKEL-QKHGS-PDIVMALVGNKADLHEKREVPAQDGI 163
                   + +TS  S  +     K + Q  GS  DI + LVGNK D   +REV  ++  
Sbjct: 79  KGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCD-ETQREVDTREAQ 137
Query: 164 EYAEKNGMFFIETSAKTADNINQLFEVLIT 193
             A++    F+ETSAK   N+ +LF+ L+T
Sbjct: 138 AVAQEWKCAFMETSAKMNYNVKELFQELLT 167

>pdb|2KB0|A Chain A, Cdc42(T35a) Length = 178

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 77/170 (45%), Gaps = 17/170 (10%)
Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           +K V++GD  VGK+C+++ +   +F P+  V       + T+ +         ++DTAGQ
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKF-PSEYVPAVFDNYAVTVMI-GGEPYTLGLFDTAGQ 61
Query: 94  ERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLH 152
           E Y  L PL Y         + + SP SF N  + WV E+  H  P     LVG + DL 
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CPKTPFLLVGTQIDLR 120
Query: 153 ------EKREVPAQDGI--EYAEK-----NGMFFIETSAKTADNINQLFE 189
                 EK     Q  I  E AEK       + ++E SA T   +  +F+
Sbjct: 121 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFD 170

>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42 And Nucleotide Exchange Domains Of Intersectin Length = 178

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 76/170 (44%), Gaps = 17/170 (10%)
Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           +K V++GD  VGK+C+++ +   +F      TV  ++    +   +  T+     DTAGQ
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLR--DTAGQ 61
Query: 94  ERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLH 152
           E Y  L PL Y         + + SP SF N  + WV E+  H  P     LVG + DL 
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CPKTPFLLVGTQIDLR 120
Query: 153 ------EKREVPAQDGI--EYAEK-----NGMFFIETSAKTADNINQLFE 189
                 EK     Q  I  E AEK       + ++E SA T   +  +F+
Sbjct: 121 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFD 170

>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A Self-Activating Gtpase Length = 203

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 80/189 (42%), Gaps = 36/189 (19%)
Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           +K V++GD  VGK+C+++ +    F      TV  ++ +  +   D   V   +WDTAGQ
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV--DGKPVNLGLWDTAGQ 63
Query: 94  ERYAALAPLYYRGXXXXXXXYDIT-------------------SPDSF-NKAQYWVKELQ 133
           E Y  L PL Y          DIT                   SP SF N    W  E++
Sbjct: 64  EDYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVR 123
Query: 134 KHGSPDIVMALVGNKADLH----------EKREVPA--QDGIEYAEKNGMF-FIETSAKT 180
            H  P+  + LVG K DL           EK+  P     G+  A++ G   ++E SA T
Sbjct: 124 HH-CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT 182
Query: 181 ADNINQLFE 189
              +  +F+
Sbjct: 183 QRGLKTVFD 191

>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas Length = 208

Iteration: 1
 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 76/159 (47%), Gaps = 15/159 (9%)
Query: 31  NLRVKLVLLGDSGVGKSCIVLRFVR--GQFDPTSKVTVGASFLSQTIALQDST-TVKFEI 87
            LR K+ ++G++ VGKS ++  F     +F     +T G   +   + + D+T +V+  +
Sbjct: 18  TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFL 77
Query: 88  WDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPD----IVMA 143
            DTAG + Y      Y+ G       +D++S +SF   + W  EL K   PD    +   
Sbjct: 78  LDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWF-ELLKSARPDRERPLRAV 136
Query: 144 LVGNKADL----HEKREVPAQDGIEYAEKNGMFFIETSA 178
           LV NK DL    H+ R   AQD   +A  N + F + SA
Sbjct: 137 LVANKTDLPPQRHQVRLDMAQD---WATTNTLDFFDVSA 172

>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs Length = 178

Iteration: 1
 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 77/170 (45%), Gaps = 17/170 (10%)
Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           +K V++GD  VGK+C+++ +   +       TV  ++    +   +  T+   ++DTAGQ
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAVTVMIGGEPYTLG--LFDTAGQ 61
Query: 94  ERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLH 152
           E Y  L PL Y         + + SP SF N  + WV E+  H  P     LVG + DL 
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CPKTPFLLVGTQIDLR 120
Query: 153 ------EKREVPAQDGI--EYAEK-----NGMFFIETSAKTADNINQLFE 189
                 EK     Q  I  E AEK       + ++E SA T   +  +F+
Sbjct: 121 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFD 170

>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding Domain Of The Cell Polarity Protein, Par6 Length = 195

Iteration: 1
 Score = 60.8 bits (146), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 77/170 (45%), Gaps = 17/170 (10%)
Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           +K V++GD  VGK+C+++ +   +F      TV  ++    +   +  T+   ++DTAG 
Sbjct: 8   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLG--LFDTAGL 65
Query: 94  ERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLH 152
           E Y  L PL Y         + + SP SF N  + WV E+  H  P     LVG + DL 
Sbjct: 66  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CPKTPFLLVGTQIDLR 124
Query: 153 ------EKREVPAQDGI--EYAEK-----NGMFFIETSAKTADNINQLFE 189
                 EK     Q  I  E AEK       + ++E SA T   +  +F+
Sbjct: 125 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFD 174

>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp Length = 175

Iteration: 1
 Score = 60.8 bits (146), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 76/158 (48%), Gaps = 5/158 (3%)
Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIAL--QDSTTVKFEIWDTAG 92
           ++VLLGD GVGK+ +   F  G+ +      +G     +T+ +  +D+T V  + W+   
Sbjct: 6   RVVLLGDPGVGKTSLASLFA-GKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEK 64
Query: 93  QERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADL 151
            ++  +      +G       Y I    SF  A     +L++ H +  + + LVGNKADL
Sbjct: 65  LDKSWSQESCL-QGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADL 123
Query: 152 HEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFE 189
              REV  ++G   A      FIETSA    N+ +LFE
Sbjct: 124 ARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFE 161

>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp (Type 1) Length = 183

Iteration: 1
 Score = 60.5 bits (145), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 70/152 (46%), Gaps = 10/152 (6%)
Query: 46  KSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYR 105
           KS + ++F +  F P    T+  S+L  T    D+     ++ DTAGQE ++A+   Y R
Sbjct: 31  KSALTIQFFQKIFVPEYDPTIEDSYLKHTEI--DNQWAILDVLDTAGQEEFSAMREQYMR 88
Query: 106 GXXXXXXXYDITSPDSFNKA----QYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQD 161
                   Y +T   SF       Q  ++   +   P   M LV NK DL   R+V    
Sbjct: 89  TGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFP---MILVANKVDLMHLRKVTRDQ 145
Query: 162 GIEYAEKNGMFFIETSAKTAD-NINQLFEVLI 192
           G E A K  + +IETSAK    N+++ F  L+
Sbjct: 146 GKEMATKYNIPYIETSAKDPPLNVDKTFHDLV 177

>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex Length = 184

Iteration: 1
 Score = 60.5 bits (145), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 77/170 (45%), Gaps = 17/170 (10%)
Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           +K V++GD  VGK+C+++ +   +F      TV  ++    +   +  T+   ++DTAG 
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLG--LFDTAGL 61
Query: 94  ERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLH 152
           E Y  L PL Y         + + SP SF N  + WV E+  H  P     LVG + DL 
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CPKTPFLLVGTQIDLR 120
Query: 153 ------EKREVPAQDGI--EYAEK-----NGMFFIETSAKTADNINQLFE 189
                 EK     Q  I  E AEK       + ++E SA T   +  +F+
Sbjct: 121 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFD 170

>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp Length = 178

Iteration: 1
 Score = 60.1 bits (144), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 80/163 (49%), Gaps = 10/163 (6%)
Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           KLV++GD GVGKS + ++F +  F P    T+  S+L  T    D+     ++ DTAGQE
Sbjct: 15  KLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEI--DNQWAILDVLDTAGQE 72
Query: 95  RYAALAPLYYRGXXXXXXXYDITSPDSFNKA----QYWVKELQKHGSPDIVMALVGNKAD 150
            ++A+   Y R        Y +T   SF       Q  ++   +   P   M LV NK D
Sbjct: 73  EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFP---MILVANKVD 129
Query: 151 LHEKREVPAQDGIEYAEKNGMFFIETSAKTAD-NINQLFEVLI 192
           L   R+V    G E A K  + +IETSAK    N+++ F  L+
Sbjct: 130 LMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLV 172

>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With Gtp Length = 167

Iteration: 1
 Score = 57.4 bits (137), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 49/148 (33%), Positives = 78/148 (52%), Gaps = 11/148 (7%)
Query: 46  KSCIVLRFVRGQF----DPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAP 101
           KS + ++FV G F    DPT +      F  + I +  S +V  EI DTAG E++A++  
Sbjct: 16  KSALTVQFVTGTFIEKYDPTIE-----DFYRKEIEVDSSPSV-LEILDTAGTEQFASMRD 69
Query: 102 LYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIV-MALVGNKADLHEKREVPAQ 160
           LY +        Y + +  SF   +    ++ +    + V + LVGNK DL  +REV + 
Sbjct: 70  LYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSS 129
Query: 161 DGIEYAEKNGMFFIETSAKTADNINQLF 188
           +G   AE+ G  F+ETSAK+   +++LF
Sbjct: 130 EGRALAEEWGCPFMETSAKSKTMVDELF 157

>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp Length = 183

Iteration: 1
 Score = 56.6 bits (135), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 69/152 (45%), Gaps = 10/152 (6%)
Query: 46  KSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYR 105
           KS + ++F +  F      T+  S+L  T    D+     ++ DTAGQE ++A+   Y R
Sbjct: 31  KSALTIQFFQKIFVDDYDPTIEDSYLKHTEI--DNQWAILDVLDTAGQEEFSAMREQYMR 88
Query: 106 GXXXXXXXYDITSPDSFNKA----QYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQD 161
                   Y +T   SF       Q  ++   +   P   M LV NK DL   R+V    
Sbjct: 89  TGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFP---MILVANKVDLMHLRKVTRDQ 145
Query: 162 GIEYAEKNGMFFIETSAKTAD-NINQLFEVLI 192
           G E A K  + +IETSAK    N+++ F  L+
Sbjct: 146 GKEMATKYNIPYIETSAKDPPLNVDKTFHDLV 177

>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase Length = 174

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 76/164 (46%), Gaps = 14/164 (8%)
Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASF-LSQTIALQDSTTVKFEIWDTAGQ 93
           K++LLG  GVGKS +  R   G  D       G ++  S  +  ++++ + ++IW+  G 
Sbjct: 9   KVLLLGAPGVGKSALA-RIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGG 67
Query: 94  E----RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNK 148
                   A+   Y          Y +T   SF KA     +L++   + D+ + LVGNK
Sbjct: 68  RWLPGHCMAMGDAYV-------IVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNK 120
Query: 149 ADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
           +DL   REV   +G   A      FIETSA    N+  LFE ++
Sbjct: 121 SDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV 164

>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex Length = 166

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 74/161 (45%), Gaps = 14/161 (8%)
Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASF-LSQTIALQDSTTVKFEIWDTAGQ 93
           K++LLG  GVGKS +  R   G  D       G ++  S  +  ++++ + ++IW+  G 
Sbjct: 4   KVLLLGAPGVGKSALA-RIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGG 62
Query: 94  E----RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNK 148
                   A+   Y          Y +T   SF KA     +L++   + D+ + LVGNK
Sbjct: 63  RWLPGHCMAMGDAY-------VIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNK 115
Query: 149 ADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFE 189
           +DL   REV   +G   A      FIETSA    N+  LFE
Sbjct: 116 SDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFE 156

>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp Length = 176

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 76/164 (46%), Gaps = 14/164 (8%)
Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASF-LSQTIALQDSTTVKFEIWDTAGQ 93
           K++LLG  GVGKS +  R   G  D       G ++  S  +  ++++ + ++IW+  G 
Sbjct: 9   KVLLLGAPGVGKSALA-RIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGG 67
Query: 94  E----RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNK 148
                   A+   Y          Y +T   SF KA     +L++   + D+ + LVGNK
Sbjct: 68  RWLPGHCMAMGDAYV-------IVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNK 120
Query: 149 ADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
           +DL   REV   +G   A      FIETSA    N+  LFE ++
Sbjct: 121 SDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV 164

>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1 Length = 214

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 90/191 (47%), Gaps = 21/191 (10%)
Query: 15  SGGLNNLENAGSSDAKNL-RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQ 73
           S G  NL   G +    + R KLVL+GD   GK+ ++    +  +  T   TV   F + 
Sbjct: 8   SSGRENLYFQGRAPQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV---FENY 64
Query: 74  TIALQ-DSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKA-QYWVKE 131
           T  L+ +   V+  +WDT+G   Y  + PL Y         +DI+ P++ + A + W  E
Sbjct: 65  TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTE 124
Query: 132 LQKHGSPDIVMALVGNKADL-----------HEKR-EVPAQDGIEYAEKNGM-FFIETSA 178
           +  +  P   + L+G K DL           H+K+  +  + G   A++ G   ++E SA
Sbjct: 125 ILDY-CPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSA 183
Query: 179 KTAD-NINQLF 188
            T++ +I+ +F
Sbjct: 184 FTSEKSIHSIF 194

>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound With Rnd1 Gtpase Length = 197

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 20/172 (11%)
Query: 33  RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQ-DSTTVKFEIWDTA 91
           R KLVL+GD   GK+ ++    +  +  T   TV   F + T  L+ +   V+  +WDT+
Sbjct: 10  RCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV---FENYTACLETEEQRVELSLWDTS 66
Query: 92  GQERYAALAPLYYRGXXXXXXXYDITSPDSFNKA-QYWVKELQKHGSPDIVMALVGNKAD 150
           G   Y  + PL Y         +DI+ P++ + A + W  E+  +  P   + L+G K D
Sbjct: 67  GSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDY-CPSTRVLLIGCKTD 125
Query: 151 L-----------HEKR-EVPAQDGIEYAEKNGM-FFIETSAKTAD-NINQLF 188
           L           H+K+  +  + G   A++ G   ++E SA T++ +I+ +F
Sbjct: 126 LRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIF 177

>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The Active Gtp Bound State Length = 198

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 20/172 (11%)
Query: 33  RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQ-DSTTVKFEIWDTA 91
           R KLVL+GD   GK+ ++    +  +  T   TV   F + T  L+ +   V+  +WDT+
Sbjct: 11  RCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV---FENYTACLETEEQRVELSLWDTS 67
Query: 92  GQERYAALAPLYYRGXXXXXXXYDITSPDSFNKA-QYWVKELQKHGSPDIVMALVGNKAD 150
           G   Y  + PL Y         +DI+ P++ + A + W  E+  +  P   + L+G K D
Sbjct: 68  GSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDY-CPSTRVLLIGCKTD 126
Query: 151 L-----------HEKR-EVPAQDGIEYAEKNGM-FFIETSAKTAD-NINQLF 188
           L           H+K+  +  + G   A++ G   ++E SA T++ +I+ +F
Sbjct: 127 LRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIF 178

>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP Length = 183

Iteration: 1
 Score = 53.9 bits (128), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 68/152 (44%), Gaps = 10/152 (6%)
Query: 46  KSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYR 105
           KS + ++F +  F      T+  S+   T    D+     ++ DTAGQE ++A+   Y R
Sbjct: 31  KSALTIQFFQKIFVDEYDPTIEDSYRKHTEI--DNQWAILDVLDTAGQEEFSAMREQYMR 88
Query: 106 GXXXXXXXYDITSPDSFNKA----QYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQD 161
                   Y +T   SF       Q  ++   +   P   M LV NK DL   R+V    
Sbjct: 89  TGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFP---MILVANKVDLMHLRKVTRDQ 145
Query: 162 GIEYAEKNGMFFIETSAKTAD-NINQLFEVLI 192
           G E A K  + +IETSAK    N+++ F  L+
Sbjct: 146 GKEMATKYNIPYIETSAKDPPLNVDKTFHDLV 177

>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp Length = 195

Iteration: 1
 Score = 53.9 bits (128), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 56/182 (30%), Positives = 79/182 (43%), Gaps = 16/182 (8%)
Query: 15  SGGLNNLENAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQT 74
           S G  NL   G  D      K++L+G+SGVGKS +   F   Q D   +         + 
Sbjct: 8   SSGRENLYFQGQKDGI---FKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERR 64
Query: 75  IAL--QDSTTVKFEIW---DTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWV 129
           I +  ++ T V ++IW   D  G  R   L              + +T   SF+K    +
Sbjct: 65  IMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQT-----GDAFLIVFSVTDRRSFSKVPETL 119
Query: 130 KELQKHGSP--DIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQL 187
             L+  G P  D+ + LVGNK+DL   REV  ++G   A       IETSA    N  +L
Sbjct: 120 LRLRA-GRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTREL 178
Query: 188 FE 189
           FE
Sbjct: 179 FE 180

>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound To Gdp Length = 180

Iteration: 1
 Score = 53.9 bits (128), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 74/159 (46%), Gaps = 7/159 (4%)
Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIAL--QDSTTVKFEIWDTAG 92
           K++LLG+SGVGKS +   F   Q D   ++        + I +  ++ T + ++IW+   
Sbjct: 14  KVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQG- 72
Query: 93  QERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSP--DIVMALVGNKAD 150
            +    L     +        + +T   SF+K    +  L+  G P  D+ + LVGNK+D
Sbjct: 73  -DAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRA-GRPHHDLPVILVGNKSD 130
Query: 151 LHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFE 189
           L   REV  ++G   A       IETSA    N  +LFE
Sbjct: 131 LARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFE 169

>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex Length = 169

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 74/159 (46%), Gaps = 7/159 (4%)
Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIAL--QDSTTVKFEIWDTAG 92
           K++L+G+SGVGKS +   F   Q D   ++        + I +  ++ T + ++IW+   
Sbjct: 4   KVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGD 63
Query: 93  QERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSP--DIVMALVGNKAD 150
              +  L     +        + +T   SF+K    +  L+  G P  D+ + LVGNK+D
Sbjct: 64  AGGW--LQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRA-GRPHHDLPVILVGNKSD 120
Query: 151 LHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFE 189
           L   REV  ++G   A       IETSA    N  +LFE
Sbjct: 121 LARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFE 159

>pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Soaked With Calcium Length = 497

Iteration: 1
 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 77/174 (44%), Gaps = 13/174 (7%)
Query: 31  NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDT 90
           N  +++++LG    GK+ I+ +   GQ   T+  TVG  F  +T+  ++   VKF +WD 
Sbjct: 320 NKEMRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVG--FNVETVTYKN---VKFNVWDV 373
Query: 91  AGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKA-QYWVKELQKHGSPDIVMALVGNKA 149
            GQ++   L   YY G        D    D  ++A Q   + +      D ++ +  NK 
Sbjct: 374 GGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQ 433
Query: 150 DLHE---KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLITCTSSYCS 200
           DL +     E+  + G+        +   + A + D    L+E L   TS+Y S
Sbjct: 434 DLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDG---LYEGLTWLTSNYKS 484

>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp Length = 174

Iteration: 1
 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 79/177 (44%), Gaps = 19/177 (10%)
Query: 31  NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDT 90
           N  +++++LG    GK+ I+ +   GQ   T+  TVG  F  +T+  ++   VKF +WD 
Sbjct: 10  NKEMRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVG--FNVETVTYKN---VKFNVWDV 63
Query: 91  AGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQK----HGSPDIVMALVG 146
            GQ++   L   YY G        D    D  ++A+   +EL +        D ++ +  
Sbjct: 64  GGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILIFA 120
Query: 147 NKADL---HEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLITCTSSYCS 200
           NK DL    +  E+  + G+        +   + A + D    L+E L   TS+Y S
Sbjct: 121 NKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDG---LYEGLTWLTSNYKS 174

>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By Human Arf6-Gtp Length = 175

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 79/177 (44%), Gaps = 19/177 (10%)
Query: 31  NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDT 90
           N  +++++LG    GK+ I+ +   GQ   T+  TVG  F  +T+  ++   VKF +WD 
Sbjct: 11  NKEMRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVG--FNVETVTYKN---VKFNVWDV 64
Query: 91  AGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQK----HGSPDIVMALVG 146
            GQ++   L   YY G        D    D  ++A+   +EL +        D ++ +  
Sbjct: 65  GGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILIFA 121
Query: 147 NKADL---HEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLITCTSSYCS 200
           NK DL    +  E+  + G+        +   + A + D    L+E L   TS+Y S
Sbjct: 122 NKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDG---LYEGLTWLTSNYKS 175

>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp Length = 162

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 78/174 (44%), Gaps = 19/174 (10%)
Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           +++++LG    GK+ I+ +   GQ   T+  TVG  F  +T+  ++   VKF +WD  GQ
Sbjct: 1   MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVG--FNVETVTYKN---VKFNVWDVGGQ 54
Query: 94  ERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQK----HGSPDIVMALVGNKA 149
           ++   L   YY G        D    D  ++A+   +EL +        D ++ +  NK 
Sbjct: 55  DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILIFANKQ 111
Query: 150 DL---HEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLITCTSSYCS 200
           DL    +  E+  + G+        +   + A + D    L+E L   TS+Y S
Sbjct: 112 DLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDG---LYEGLTWLTSNYKS 162

>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex Length = 160

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 77/172 (44%), Gaps = 19/172 (11%)
Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           +++++LG    GK+ I+ +   GQ   T+  TVG  F  +T+  ++   VKF +WD  GQ
Sbjct: 1   MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVG--FNVETVTYKN---VKFNVWDVGGQ 54
Query: 94  ERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQK----HGSPDIVMALVGNKA 149
           ++   L   YY G        D    D  ++A+   +EL +        D ++ +  NK 
Sbjct: 55  DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILIFANKQ 111
Query: 150 DL---HEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLITCTSSY 198
           DL    +  E+  + G+        +   + A + D    L+E L   TS+Y
Sbjct: 112 DLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDG---LYEGLTWLTSNY 160

>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex Length = 162

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 76/173 (43%), Gaps = 19/173 (10%)
Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           +++ LG    GK+ I+ +   GQ   T+  TVG  F  +T+  ++   VKF +WD  GQ+
Sbjct: 2   RILXLGLDAAGKTTILYKLKLGQ-SVTTIPTVG--FNVETVTYKN---VKFNVWDVGGQD 55
Query: 95  RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQK----HGSPDIVMALVGNKAD 150
           +   L   YY G        D    D  ++A+   +EL +        D ++ +  NK D
Sbjct: 56  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREXRDAIILIFANKQD 112
Query: 151 L---HEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLITCTSSYCS 200
           L    +  E+  + G+        +   + A + D    L+E L   TS+Y S
Sbjct: 113 LPDAXKPHEIQEKLGLTRIRDRNWYVQPSCATSGDG---LYEGLTWLTSNYKS 162

>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length = 175

Iteration: 1
 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 78/177 (44%), Gaps = 19/177 (10%)
Query: 31  NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDT 90
           N  +++++LG    GK+ I+ +   GQ   T+  TVG  F  +T+  ++   VKF +WD 
Sbjct: 11  NKEMRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVG--FNVETVTYKN---VKFNVWDV 64
Query: 91  AGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQK----HGSPDIVMALVG 146
            G ++   L   YY G        D    D  ++A+   +EL +        D ++ +  
Sbjct: 65  GGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILIFA 121
Query: 147 NKADL---HEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLITCTSSYCS 200
           NK DL    +  E+  + G+        +   + A + D    L+E L   TS+Y S
Sbjct: 122 NKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDG---LYEGLTWLTSNYKS 175

>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A Specific Effector, Jip4 Length = 165

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 78/176 (44%), Gaps = 19/176 (10%)
Query: 32  LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTA 91
           + +++++LG    GK+ I+ +   GQ   T+  TVG  F  +T+  ++   VKF +WD  
Sbjct: 2   MEMRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVG--FNVETVTYKN---VKFNVWDVG 55
Query: 92  GQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQK----HGSPDIVMALVGN 147
           G ++   L   YY G        D    D  ++A+   +EL +        D ++ +  N
Sbjct: 56  GLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILIFAN 112
Query: 148 KADL---HEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLITCTSSYCS 200
           K DL    +  E+  + G+        +   + A + D    L+E L   TS+Y S
Sbjct: 113 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDG---LYEGLTWLTSNYKS 165

>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like Protein 1) Complex Length = 172

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 78/176 (44%), Gaps = 19/176 (10%)
Query: 32  LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTA 91
           + +++++LG    GK+ I+ +   GQ   T+  TVG  F  +T+  ++   VKF +WD  
Sbjct: 1   MEMRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVG--FNVETVTYKN---VKFNVWDVG 54
Query: 92  GQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQK----HGSPDIVMALVGN 147
           G ++   L   YY G        D    D  ++A+   +EL +        D ++ +  N
Sbjct: 55  GLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILIFAN 111
Query: 148 KADL---HEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLITCTSSYCS 200
           K DL    +  E+  + G+        +   + A + D    L+E L   TS+Y S
Sbjct: 112 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDG---LYEGLTWLTSNYKS 164

>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In Complex With Gdp Length = 187

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 75/177 (42%), Gaps = 31/177 (17%)
Query: 15  SGGLNNLENAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQF----DPTSKVTVGASF 70
           S G  NL   G      L V L +LG  G GKS + ++F+  +F    DP  + T  +  
Sbjct: 8   SSGRENLYFQGP-----LEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSE- 61
Query: 71  LSQTIALQDSTTVKFEIWDTAGQ------ERYAALAPLYYRGXXXXXXXYDITSPDSFNK 124
             +T+   D   V   + DTA        ERY   A  +          Y + S  SF+ 
Sbjct: 62  --ETV---DHQPVHLRVMDTADLDTPRNCERYLNWAHAF-------LVVYSVDSRQSFDS 109
Query: 125 AQYWVKELQKHGSP---DIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSA 178
           +  +++ L  H       I   L+GNK D+ + R+V   +G+  A + G  F E SA
Sbjct: 110 SSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSA 166

>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b Length = 188

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 71/171 (41%), Gaps = 15/171 (8%)
Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           ++L L+G    GK+  V     GQF+     TVG +    T        V  ++WD  GQ
Sbjct: 23  MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKIT-----KGNVTIKLWDIGGQ 77
Query: 94  ERYAALAPLYYRGXXXXXXXYDITSPD----SFNKAQYWVKELQKHGSPDIVMALVGNKA 149
            R+ ++   Y RG        D    +    S N+    + + Q  G P +V+   GNK 
Sbjct: 78  PRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVL---GNKR 134
Query: 150 DLH---EKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLITCTSS 197
           DL    +++E+  +  +   +   +     S K  DNI+   + LI  + S
Sbjct: 135 DLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKS 185

>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 69/176 (39%), Gaps = 25/176 (14%)
Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           ++L L+G    GK+  V     GQF      TVG +    T        V  +IWD  GQ
Sbjct: 23  MELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVT-----KGNVTIKIWDIGGQ 77
Query: 94  ERYAALAPLYYRGXXXXXXXYDITSPD----SFNKAQYWVKELQKHGSPDIVMALVGNKA 149
            R+ ++   Y RG        D    +    S N+    + + Q  G P +V+   GNK 
Sbjct: 78  PRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVL---GNKR 134
Query: 150 DLHEKREVPAQDGIEYAEKNGMFFIE--------TSAKTADNINQLFEVLITCTSS 197
           DL       A D  +  EK  +  I+         S K  DNI+   + LI  + S
Sbjct: 135 DLPN-----ALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKS 185

>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b (Arl10b) Length = 193

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 69/166 (41%), Gaps = 15/166 (9%)
Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           ++L L+G    GK+  V     GQF+     TVG +    T        V  ++WD  GQ
Sbjct: 32  MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKIT-----KGNVTIKLWDIGGQ 86
Query: 94  ERYAALAPLYYRGXXXXXXXYDITSPD----SFNKAQYWVKELQKHGSPDIVMALVGNKA 149
            R+ ++   Y RG        D    +    S N+    + + Q  G P +V+   GNK 
Sbjct: 87  PRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVL---GNKR 143
Query: 150 DLH---EKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
           DL    +++E+  +  +   +   +     S K  DNI+   + LI
Sbjct: 144 DLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLI 189

>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco) Length = 535

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 59/126 (46%), Gaps = 15/126 (11%)
Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIA----LQDSTTVK---FE 86
           +K+ L+GD   GK+ ++ + +   FDP    T G + +++       L++   +K   F 
Sbjct: 42  IKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFH 101
Query: 87  IWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHG--SPDIVMAL 144
            WD  GQE   A    +           D +  DS NK  YW++ ++K+G  SP IV   
Sbjct: 102 FWDFGGQEIMHASHQFFMTRSSVYMLLLD-SRTDS-NK-HYWLRHIEKYGGKSPVIV--- 155
Query: 145 VGNKAD 150
           V NK D
Sbjct: 156 VMNKID 161

>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution Length = 181

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/155 (23%), Positives = 75/155 (48%), Gaps = 11/155 (7%)
Query: 31  NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDT 90
           N  ++++++G  G GK+ ++ +   G+   T+  T+G  F  +T+  ++   + F +WD 
Sbjct: 15  NKEMRILMVGLDGAGKTTVLYKLKLGEV-ITTIPTIG--FNVETVQYKN---ISFTVWDV 68
Query: 91  AGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKE-LQKHGSPDIVMALVGNKA 149
            GQ+R  +L   YYR         D        +A+  ++  L +    + V  +  NK 
Sbjct: 69  GGQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNAVWLVFANKQ 128
Query: 150 DLHEKR---EVPAQDGIEYAEKNGMFFIETSAKTA 181
           DL E     E+  + G+ ++ +N  +FI+++  T+
Sbjct: 129 DLPEAMSAAEITEKLGL-HSIRNRPWFIQSTCATS 162

>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein, Gdp- Bound Length = 181

Iteration: 1
 Score = 40.0 bits (92), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 36/155 (23%), Positives = 72/155 (46%), Gaps = 11/155 (7%)
Query: 31  NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDT 90
           N  ++++++G  G GK+ ++ +   G+   T+  T+G  F  +T+  ++   + F +WD 
Sbjct: 15  NKEMRILMVGLDGAGKTTVLYKLKLGEV-ITTIPTIG--FNVETVQYKN---ISFTVWDV 68
Query: 91  AGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALV-GNKA 149
            GQ+R  +L   YYR         D        +A+  ++ +           LV  NK 
Sbjct: 69  GGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQ 128
Query: 150 DLHEKR---EVPAQDGIEYAEKNGMFFIETSAKTA 181
           DL E     E+  + G+ ++ +N  +FI+ +  T+
Sbjct: 129 DLPEAMSAAEITEKLGL-HSIRNRPWFIQATCATS 162

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	200
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	2e-99
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	3e-99
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	5e-98
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	2e-97
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	1e-96
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	3e-95
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	3e-95
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	4e-90
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	1e-89
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	3e-87
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	2e-86
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	1e-85
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	4e-85
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	1e-84
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	3e-83
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	4e-83
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	6e-83
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	2e-82
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	2e-81
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	6e-81
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	7e-81
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	4e-80
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	1e-79
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	8e-79
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	1e-78
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	1e-78
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	1e-78
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	1e-78
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	2e-78
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	2e-77
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	2e-77
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	3e-77
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	4e-77
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	4e-77
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	5e-77
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	8e-77
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	2e-76
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	2e-76
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	7e-76
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	1e-75
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	3e-75
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	3e-75
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	3e-74
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	2e-73
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	2e-70
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	1e-68
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	1e-68
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	3e-68
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	1e-67
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	4e-67
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	4e-67
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	9e-67
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	1e-65
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	2e-65
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	3e-65
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	2e-64
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	6e-64
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	2e-63
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	2e-63
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	9e-63
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	4e-62
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	5e-62
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	5e-61
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	5e-61
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	5e-61
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	1e-60
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	1e-60
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	1e-59
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	5e-54
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	4e-53
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	1e-46
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	1e-44
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	2e-44
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	5e-44
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	2e-43
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	4e-43
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	1e-42
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	2e-42
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	3e-40
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	3e-40
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	4e-40
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	5e-40
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	1e-39
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	3e-28
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	1e-25
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	2e-19
3llu_A	196	RAS-related GTP-binding protein C; structural geno	6e-18
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	2e-17
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	4e-11
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	1e-10
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	2e-10
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	3e-10
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	4e-10
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	4e-10
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	6e-10
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	2e-09
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	2e-09
2fh5_B	214	SR-beta, signal recognition particle receptor beta	3e-09
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	5e-09
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	8e-09
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	1e-08
2ged_A	193	SR-beta, signal recognition particle receptor beta	2e-08
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	2e-06
1nrj_B	218	SR-beta, signal recognition particle receptor beta	2e-06
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	4e-06
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	5e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	5e-05
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	6e-05
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	9e-05
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	1e-04
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	3e-04
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	3e-04

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score =  284 bits (730), Expect = 2e-99
 Identities = 94/193 (48%), Positives = 121/193 (62%), Gaps = 11/193 (5%)

Query: 1   MGCSGSVPARSSGQSGGLNNLENAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDP 60
           MG S      SSG               +    +K+ LLGD+GVGKS IV RFV+  FD 
Sbjct: 1   MGSSHHHHHHSSGLV----------PRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDH 50

Query: 61  TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPD 120
               T+GASF+++T+   +    KF IWDTAGQER+ +LAP+YYRG+A AV+VYDIT  D
Sbjct: 51  NISPTIGASFMTKTVPCGN-ELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQD 109

Query: 121 SFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKT 180
           SF   + WVKEL++HG  +IVMA+ GNK DL + REVP +D  EYAE  G   +ETSAK 
Sbjct: 110 SFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKN 169

Query: 181 ADNINQLFEVLIT 193
           A NI +LF+ +  
Sbjct: 170 AINIEELFQGISR 182

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score =  284 bits (728), Expect = 3e-99
 Identities = 94/170 (55%), Positives = 130/170 (76%), Gaps = 1/170 (0%)

Query: 24  AGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTV 83
             ++  K++  KLVLLGD G GKS +VLRFV+ QF    + T+GA+F SQT+A+ D  TV
Sbjct: 3   MAAAGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVND-ATV 61

Query: 84  KFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMA 143
           KFEIWDTAGQERY +LAP+YYRGAA A++V+D+T+  SF +A+ WV+ELQ  G+P++VMA
Sbjct: 62  KFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMA 121

Query: 144 LVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT 193
           L GNK+DL + R+V A+D   YA++NG+FF+ETSAKTA N+ ++F  +  
Sbjct: 122 LAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIAR 171

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score =  280 bits (719), Expect = 5e-98
 Identities = 83/165 (50%), Positives = 115/165 (69%), Gaps = 1/165 (0%)

Query: 29  AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIW 88
           +    +K+ LLGD+GVGKS I+ RFV   FDP    T+GASF+++T+  Q+    KF IW
Sbjct: 2   SALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQN-ELHKFLIW 60

Query: 89  DTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNK 148
           DTAG ER+ ALAP+YYRG+A A++VYDIT  ++F+  + WV+EL++HG P IV+A+ GNK
Sbjct: 61  DTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNK 120

Query: 149 ADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT 193
            DL + REV  +D  +YA+     F+ETSAK A NIN+LF  +  
Sbjct: 121 CDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISR 165

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score =  278 bits (714), Expect = 2e-97
 Identities = 98/164 (59%), Positives = 126/164 (76%), Gaps = 1/164 (0%)

Query: 30  KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWD 89
           K  + KLVLLG+S VGKS +VLRFV+GQF    + T+GA+FL+QT+ L D TTVKFEIWD
Sbjct: 3   KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCL-DDTTVKFEIWD 61

Query: 90  TAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKA 149
           TAGQERY +LAP+YYRGA  A+VVYDIT+ +SF +A+ WVKELQ+  SP+IV+AL GNKA
Sbjct: 62  TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKA 121

Query: 150 DLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT 193
           DL  KR V  Q+   YA+ N + F+ETSAKT+ N+N++F  +  
Sbjct: 122 DLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAK 165

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score =  277 bits (711), Expect = 1e-96
 Identities = 72/170 (42%), Positives = 110/170 (64%), Gaps = 1/170 (0%)

Query: 24  AGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTV 83
           +G       + KLV LG+  VGK+ ++ RF+   FD T + T+G  FLS+T+ L+D  TV
Sbjct: 5   SGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLED-RTV 63

Query: 84  KFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMA 143
           + ++WDTAGQER+ +L P Y R + VAVVVYDIT+ +SF++   W+ +++     D+++ 
Sbjct: 64  RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIM 123

Query: 144 LVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT 193
           LVGNK DL +KR+V  ++G   A++  + FIETSAK   N+ QLF  +  
Sbjct: 124 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAA 173

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score =  273 bits (701), Expect = 3e-95
 Identities = 72/159 (45%), Positives = 98/159 (61%), Gaps = 1/159 (0%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           K+VLLG+  VGK+ +VLR+   +F+     T+GASFL++ + +     V   IWDTAGQE
Sbjct: 8   KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNI-GGKRVNLAIWDTAGQE 66

Query: 95  RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
           R+ AL P+YYR +  A++VYDIT  DSF K + WVKEL+K    +I + +VGNK DL ++
Sbjct: 67  RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKE 126

Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT 193
           R V  Q+   YAE  G     TSAK    I +LF  L  
Sbjct: 127 RHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCK 165

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score =  274 bits (704), Expect = 3e-95
 Identities = 71/171 (41%), Positives = 107/171 (62%), Gaps = 1/171 (0%)

Query: 23  NAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTT 82
             G       + KLV LG+  VGK+ ++ RF+   FD T + T+G  FLS+T+ L+D  T
Sbjct: 6   TGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLED-RT 64

Query: 83  VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVM 142
           V+ ++WDTAG ER+ +L P Y R + VAVVVYDIT+ +SF +   W+ +++     D+++
Sbjct: 65  VRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVII 124

Query: 143 ALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT 193
            LVGNK DL +KR+V  ++G   A++  + FIETSAK   N+ QLF  +  
Sbjct: 125 MLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAA 175

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score =  260 bits (668), Expect = 4e-90
 Identities = 51/162 (31%), Positives = 80/162 (49%), Gaps = 3/162 (1%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           K+V+LGD   GK+ +   F +  F    K T+G  F  + I L  +  V  +IWD  GQ 
Sbjct: 8   KIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQT 67

Query: 95  RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYW---VKELQKHGSPDIVMALVGNKADL 151
               +   Y  GA   ++VYDIT+  SF   + W   VK++ +      ++ALVGNK DL
Sbjct: 68  IGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDL 127

Query: 152 HEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT 193
              R +  +  + + ++NG      SAKT D++   F+ +  
Sbjct: 128 EHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAA 169

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score =  260 bits (666), Expect = 1e-89
 Identities = 78/193 (40%), Positives = 114/193 (59%), Gaps = 9/193 (4%)

Query: 1   MGCSGSVPARSSGQSGGLNNLENAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDP 60
           MG S      SSG             S+  N   K+VL+G+SGVGK+ ++ RF R +F  
Sbjct: 1   MGSSHHHHHHSSGLVPR--------GSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSH 52

Query: 61  TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPD 120
            S+ T+G  F ++T+ L  +  VK +IWDTAG ERY A+   YYRGA  A++V+D+T   
Sbjct: 53  DSRTTIGVEFSTRTVML-GTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQ 111

Query: 121 SFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKT 180
           ++   + W+KEL  H    IV+ LVGNK+DL + REVP ++   +AE NG+ F+ETSA  
Sbjct: 112 TYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALD 171

Query: 181 ADNINQLFEVLIT 193
           + N+   FE ++ 
Sbjct: 172 STNVELAFETVLK 184

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score =  254 bits (650), Expect = 3e-87
 Identities = 75/159 (47%), Positives = 107/159 (67%), Gaps = 1/159 (0%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           K+VL+GDSGVGKS ++ RF R +F+  SK T+G  F +++I + D  T+K +IWDTAG E
Sbjct: 31  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV-DGKTIKAQIWDTAGLE 89

Query: 95  RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
           RY A+   YYRGA  A++VYDI    ++   + W+KEL+ H   +IV+ LVGNK+DL   
Sbjct: 90  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 149

Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT 193
           R VP  +   +AEKNG+ FIETSA  + N+   F+ ++T
Sbjct: 150 RAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILT 188

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score =  253 bits (647), Expect = 2e-86
 Identities = 56/167 (33%), Positives = 87/167 (52%)

Query: 25  GSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVK 84
           GS + + L  K+ L+GD GVGK+  + R + G+F+     TVGA     T        +K
Sbjct: 3   GSMERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIK 62

Query: 85  FEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMAL 144
           F +WDTAGQE+ A L  +YY GA+ A++ +D+TS  +      WVKE Q     +  + +
Sbjct: 63  FNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVV 122

Query: 145 VGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVL 191
             NK D+  ++++  +  +E  +     + E SAKTA N    F  L
Sbjct: 123 CANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHL 169

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score =  250 bits (641), Expect = 1e-85
 Identities = 77/193 (39%), Positives = 116/193 (60%), Gaps = 8/193 (4%)

Query: 1   MGCSGSVPARSSGQSGGLNNLENAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDP 60
           MG S      SSG       L   GS +  +   K+VL+G++GVGK+C+V RF +G F P
Sbjct: 1   MGSSHHHHHHSSG-------LVPRGSMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPP 53

Query: 61  TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPD 120
               T+G  F+ +T+ + +   VK +IWDTAGQER+ ++   YYR A   ++ YDIT  +
Sbjct: 54  GQGATIGVDFMIKTVEI-NGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEE 112

Query: 121 SFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKT 180
           SF     W++E++++ S  ++  LVGNK DL E+REV  Q   E++E   M+++ETSAK 
Sbjct: 113 SFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKE 172

Query: 181 ADNINQLFEVLIT 193
           +DN+ +LF  L  
Sbjct: 173 SDNVEKLFLDLAC 185

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score =  249 bits (637), Expect = 4e-85
 Identities = 74/159 (46%), Positives = 107/159 (67%), Gaps = 1/159 (0%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           K+VL+GDSGVGKS ++ RF R +F+  SK T+G  F +++I + D  T+K +IWDTAGQE
Sbjct: 7   KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV-DGKTIKAQIWDTAGQE 65

Query: 95  RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
           RY  +   YYRGA  A++VYDI    ++   + W+KEL+ H   +IV+ LVGNK+DL   
Sbjct: 66  RYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 125

Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT 193
           R VP  +   +AEKN + FIETSA  + N+ + F+ ++T
Sbjct: 126 RAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILT 164

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score =  247 bits (632), Expect = 1e-84
 Identities = 67/179 (37%), Positives = 116/179 (64%), Gaps = 1/179 (0%)

Query: 15  SGGLNNLENAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQT 74
           S   ++  ++G     +   K +++GD+GVGKSC++L+F   +F P   +T+G  F ++ 
Sbjct: 3   SSHHHHHHSSGLVPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM 62

Query: 75  IALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQK 134
           + + D   +K +IWDTAGQE + ++   YYRGAA A++VYDIT  ++FN    W+++ ++
Sbjct: 63  VNI-DGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQ 121

Query: 135 HGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT 193
           H S ++V+ L+GNK+DL  +R+V  ++G  +A ++G+ F+ETSAKTA N+ + F     
Sbjct: 122 HSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAK 180

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score =  243 bits (623), Expect = 3e-83
 Identities = 65/174 (37%), Positives = 105/174 (60%), Gaps = 1/174 (0%)

Query: 20  NLENAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQD 79
            L +A +    +   K +++GD GVGKSC++ +F   +F      T+G  F ++ I +  
Sbjct: 2   PLGSATAPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEV-S 60

Query: 80  STTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPD 139
              +K +IWDTAGQER+ A+   YYRGAA A++VYDIT   ++N    W+ + +   +P+
Sbjct: 61  GQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPN 120

Query: 140 IVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT 193
            V+ L+GNKADL  +R+V  ++  ++AE+NG+ F+E SAKT +N+   F     
Sbjct: 121 TVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAK 174

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score =  244 bits (626), Expect = 4e-83
 Identities = 67/159 (42%), Positives = 108/159 (67%), Gaps = 1/159 (0%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           K+VL+GDSGVGKS ++ RF + +F+  SK T+G  F ++T+ + +   +K +IWDTAGQE
Sbjct: 15  KIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEI-EGKRIKAQIWDTAGQE 73

Query: 95  RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
           RY A+   YYRGA  A++VYDI+   S+    +W+ EL+++   ++ + L+GNK+DL   
Sbjct: 74  RYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHL 133

Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT 193
           R VP ++   +A++N + F ETSA  ++N+++ FE LI 
Sbjct: 134 RAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELIN 172

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score =  242 bits (620), Expect = 6e-83
 Identities = 54/159 (33%), Positives = 87/159 (54%), Gaps = 2/159 (1%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           K+V++G+  VGKS ++ R+ +G F    K T+G  FL + I + D   V+  +WDTAGQE
Sbjct: 7   KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVND-EDVRLMLWDTAGQE 65

Query: 95  RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
            + A+   YYRGA   V+V+  T  +SF     W +++      DI  ALV NK DL + 
Sbjct: 66  EFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAE-VGDIPTALVQNKIDLLDD 124

Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT 193
             +  ++    A++  + F  TS K   N++++F+ L  
Sbjct: 125 SCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAE 163

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score =  242 bits (619), Expect = 2e-82
 Identities = 71/193 (36%), Positives = 109/193 (56%), Gaps = 9/193 (4%)

Query: 1   MGCSGSVPARSSGQSGGLNNLENAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDP 60
           MG S      SSG             S   +   K +++G +G GKSC++ +F+  +F  
Sbjct: 1   MGSSHHHHHHSSGLV--------PRGSIWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQ 52

Query: 61  TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPD 120
            S  T+G  F S+ + +    TVK +IWDTAGQER+ ++   YYRGAA A++VYDITS +
Sbjct: 53  DSNHTIGVEFGSRVVNV-GGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRE 111

Query: 121 SFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKT 180
           ++N    W+ + +   SP+IV+ L GNK DL  +REV   +   +A++N + F+ETSA T
Sbjct: 112 TYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALT 171

Query: 181 ADNINQLFEVLIT 193
            +N+ + F     
Sbjct: 172 GENVEEAFLKCAR 184

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score =  239 bits (612), Expect = 2e-81
 Identities = 77/193 (39%), Positives = 112/193 (58%), Gaps = 1/193 (0%)

Query: 1   MGCSGSVPARSSGQSGGLNNLENAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDP 60
           MG S      SSG++        +  +   +   KL+L+GDSGVGKSC++LRF    +  
Sbjct: 1   MGSSHHHHHHSSGENLYFQGRPMSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTE 60

Query: 61  TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPD 120
           +   T+G  F  +TI L D  T+K +IWDTAGQER+  +   YYRGA   +VVYD+T  +
Sbjct: 61  SYISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQE 119

Query: 121 SFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKT 180
           SFN  + W++E+ ++ S ++   LVGNK DL  K+ V      E+A+  G+ F+ETSAK 
Sbjct: 120 SFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKN 179

Query: 181 ADNINQLFEVLIT 193
           A N+ Q F  +  
Sbjct: 180 ATNVEQSFMTMAA 192

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score =  238 bits (610), Expect = 6e-81
 Identities = 46/188 (24%), Positives = 84/188 (44%), Gaps = 10/188 (5%)

Query: 15  SGGLNNLENAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVR--GQFDPTSKVTVGASFLS 72
           +  +   E         LR K+ ++G++ VGKS ++  F     +F     +T G   + 
Sbjct: 2   AASMVKKEVKPIDITATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVV 61

Query: 73  QTIALQDSTTVKFEIW--DTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVK 130
             + +   TTV  E++  DTAG + Y      Y+ G   A++V+D++S +SF   + W +
Sbjct: 62  APVTI-PDTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFE 120

Query: 131 ELQK---HGSPDIVMALVGNKADL-HEKREVPAQDGIEYAEKNGMFFIETSAK-TADNIN 185
            L+         +   LV NK DL  ++ +V      ++A  N + F + SA     + +
Sbjct: 121 LLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDAD 180

Query: 186 QLFEVLIT 193
             F  + T
Sbjct: 181 APFLSIAT 188

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score =  237 bits (608), Expect = 7e-81
 Identities = 63/159 (39%), Positives = 99/159 (62%), Gaps = 1/159 (0%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           K +++G++G GKSC++ +F+  +F   S  T+G  F S+ I +     VK +IWDTAGQE
Sbjct: 12  KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINV-GGKYVKLQIWDTAGQE 70

Query: 95  RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
           R+ ++   YYRGAA A++VYDITS +++N    W+ + +   S +IV+ L GNK DL   
Sbjct: 71  RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDAD 130

Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT 193
           REV   +   +A++N + F+ETSA T +N+ + F     
Sbjct: 131 REVTFLEASRFAQENELMFLETSALTGENVEEAFVQCAR 169

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score =  236 bits (604), Expect = 4e-80
 Identities = 72/195 (36%), Positives = 104/195 (53%), Gaps = 39/195 (20%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDST------------- 81
           K VLLG+S VGKS IVLR  +  F   +  T+GASF +  + L D               
Sbjct: 9   KTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNI 68

Query: 82  -----------------------TVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITS 118
                                   +KF+IWDTAGQERYA++ PLYYRGA  A+VV+DI++
Sbjct: 69  NSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISN 128

Query: 119 PDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSA 178
            ++ ++A+ WV +L+     + ++ LV NK D   K +V   +  +YA+ N + FI+TSA
Sbjct: 129 SNTLDRAKTWVNQLKIS--SNYIIILVANKIDK-NKFQVDILEVQKYAQDNNLLFIQTSA 185

Query: 179 KTADNINQLFEVLIT 193
           KT  NI  +F +L  
Sbjct: 186 KTGTNIKNIFYMLAE 200

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score =  235 bits (602), Expect = 1e-79
 Identities = 72/194 (37%), Positives = 104/194 (53%), Gaps = 6/194 (3%)

Query: 1   MGCSGSVPARSSGQSGGLNNLENAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDP 60
           MG S      SSG         +    +  +   KLVL+GD+ VGK+C+V RF  G F  
Sbjct: 1   MGSSHHHHHHSSGLVPR----GSGDPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSE 56

Query: 61  TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPD 120
               T+G  F  +T+ +     VK +IWDTAGQER+  +   YYR A  A++ YDIT   
Sbjct: 57  RQGSTIGVDFTMKTLEI-QGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRS 115

Query: 121 SFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNG-MFFIETSAK 179
           SF    +W+++++K+   +IV  L+GNK+DL E REV   +    AE    +  IETSAK
Sbjct: 116 SFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAK 175

Query: 180 TADNINQLFEVLIT 193
            + N+ + F  + T
Sbjct: 176 DSSNVEEAFLRVAT 189

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score =  232 bits (595), Expect = 8e-79
 Identities = 71/159 (44%), Positives = 101/159 (63%), Gaps = 1/159 (0%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           KL+L+GDSGVGKSC++LRF    +  +   T+G  F  +TI L D  T+K +IWDTAGQE
Sbjct: 18  KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQE 76

Query: 95  RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
           R+  +   YYRGA   +VVYD+T  +SFN  + W++E+ ++ S ++   LVGNK DL  K
Sbjct: 77  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 136

Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT 193
           + V      E+A+  G+ F+ETSAK A N+ Q F  +  
Sbjct: 137 KVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAA 175

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score =  232 bits (594), Expect = 1e-78
 Identities = 75/160 (46%), Positives = 102/160 (63%), Gaps = 3/160 (1%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           K++++G+SGVGKS ++LRF    FDP    T+G  F  +TI++ D    K  IWDTAGQE
Sbjct: 17  KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISV-DGNKAKLAIWDTAGQE 75

Query: 95  RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSP-DIVMALVGNKADLHE 153
           R+  L P YYRGA   ++VYD+T  D+F K   W+ EL+ + +  DIV  LVGNK D  E
Sbjct: 76  RFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDK-E 134

Query: 154 KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT 193
            REV   +G+++A K+ M FIE SAKT D +   FE L+ 
Sbjct: 135 NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVE 174

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score =  232 bits (595), Expect = 1e-78
 Identities = 63/199 (31%), Positives = 95/199 (47%), Gaps = 12/199 (6%)

Query: 1   MGCSGSVPARSSGQSGGLNNLENAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDP 60
           MG S      SSG          +  S +     K+VL GD+ VGKS  ++R  + +F  
Sbjct: 1   MGSSHHHHHHSSGLV-----PRGSAKSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRE 55

Query: 61  TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPD 120
               T+G  F  +T+ + D      ++WDTAGQER+ ++A  Y+R A   +++YD+T   
Sbjct: 56  NISATLGVDFQMKTLIV-DGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEK 114

Query: 121 SFNKAQYWVKELQKHGSPDIVMALVGNKADLH------EKREVPAQDGIEYAEKNGMFFI 174
           SF   + WV  ++      + + LVGNKAD+        ++ VP   G + A   G  F 
Sbjct: 115 SFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFC 174

Query: 175 ETSAKTADNINQLFEVLIT 193
           ETSAK   NI +    L  
Sbjct: 175 ETSAKDGSNIVEAVLHLAR 193

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score =  232 bits (595), Expect = 1e-78
 Identities = 66/159 (41%), Positives = 99/159 (62%), Gaps = 1/159 (0%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           KL+L+G+SGVGKSC++LRF    +      T+G  F  +T+ L D  TVK +IWDTAGQE
Sbjct: 10  KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVEL-DGKTVKLQIWDTAGQE 68

Query: 95  RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
           R+  +   YYRG+   ++VYD+T  +SFN  + W++E+ ++ +  ++  LVGNK DL +K
Sbjct: 69  RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDK 128

Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT 193
           R V      E+A+ N M F+ETSA  + N+   F  +  
Sbjct: 129 RVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMAR 167

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score =  232 bits (595), Expect = 1e-78
 Identities = 60/171 (35%), Positives = 98/171 (57%), Gaps = 5/171 (2%)

Query: 27  SDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFE 86
           +  K + +K+++LGDSGVGK+ ++ ++V  +F    K T+GA FL++ + + D   V  +
Sbjct: 2   TSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMV-DDRLVTMQ 60

Query: 87  IWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSP----DIVM 142
           IWDTAGQER+ +L   +YRGA   V+V+D+T+P++F     W  E     SP    +   
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 120

Query: 143 ALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT 193
            ++GNK DL  ++    +       KN + + ETSAK A N+ Q F+ +  
Sbjct: 121 VVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR 171

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score =  231 bits (592), Expect = 2e-78
 Identities = 59/173 (34%), Positives = 93/173 (53%), Gaps = 6/173 (3%)

Query: 27  SDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFE 86
           S  K   +K+++LGDSGVGK+ ++ R+V  ++    K T+GA FL++ + +        +
Sbjct: 2   SSRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQ 61

Query: 87  IWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSP----DIVM 142
           +WDTAGQER+ +L   +YRGA   V+VYD+T+  SF   + W  E   H +         
Sbjct: 62  VWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPF 121

Query: 143 ALVGNKADL-HEKREVPAQDGIEYAEKNG-MFFIETSAKTADNINQLFEVLIT 193
            ++GNK D    K+ V  +   E A+  G +    TSAK A N++  FE +  
Sbjct: 122 VILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIAR 174

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score =  228 bits (583), Expect = 2e-77
 Identities = 87/162 (53%), Positives = 117/162 (72%), Gaps = 4/162 (2%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           KLVLLG++ VGKS IVLRFV   F    + T+GA+FL+Q + + +  TVKFEIWDTAGQE
Sbjct: 5   KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINE-HTVKFEIWDTAGQE 63

Query: 95  RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE- 153
           R+A+LAP YYR A  A+VVYD+T P SF KA++WVKEL +  S DI++ALVGNK D  + 
Sbjct: 64  RFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQE 123

Query: 154 --KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT 193
             +R+V  ++G + AE+ G+ F ETSAKT +N+N +F  +  
Sbjct: 124 GGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGE 165

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score =  229 bits (585), Expect = 2e-77
 Identities = 64/159 (40%), Positives = 93/159 (58%), Gaps = 1/159 (0%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           KL+L+G+S VGK+  + R+    F P    TVG  F  +T+       +K +IWDTAGQE
Sbjct: 24  KLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYR-HDKRIKLQIWDTAGQE 82

Query: 95  RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
           RY  +   YYRGA   +++YDI + +SF   Q W  +++ +   +  + LVGNK DL ++
Sbjct: 83  RYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDE 142

Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT 193
           R VPA+DG   A+  G  F E SAK   N+ Q+FE L+ 
Sbjct: 143 RVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVD 181

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score =  228 bits (583), Expect = 3e-77
 Identities = 67/159 (42%), Positives = 101/159 (63%), Gaps = 1/159 (0%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           KL+L+GDSGVGK+C++ RF    F+ T   T+G  F  +TI L D   +K +IWDTAGQE
Sbjct: 10  KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIEL-DGKRIKLQIWDTAGQE 68

Query: 95  RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
           R+  +   YYRGA   ++VYDIT+  SF+  + W++ +++H S D+   ++GNK D+++K
Sbjct: 69  RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDK 128

Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT 193
           R+V  + G + A   G+ F+ETSAK   N+   F  L  
Sbjct: 129 RQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLAR 167

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score =  229 bits (586), Expect = 4e-77
 Identities = 48/159 (30%), Positives = 81/159 (50%), Gaps = 4/159 (2%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           KLVL+GD G GK+  V R + G+F+     T+G           +   +KF +WDTAGQE
Sbjct: 17  KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT-NRGPIKFNVWDTAGQE 75

Query: 95  RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
           ++  L   YY  A  A++++D+TS  ++     W ++L +    +I + L GNK D+ ++
Sbjct: 76  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV-CENIPIVLCGNKVDIKDR 134

Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT 193
           +       I +  K  + + + SAK+  N  + F  L  
Sbjct: 135 KVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 171

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score =  228 bits (583), Expect = 4e-77
 Identities = 64/159 (40%), Positives = 93/159 (58%), Gaps = 1/159 (0%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           KL+++G+S VGK+  + R+    F P    TVG  F  +T+       VK +IWDTAGQE
Sbjct: 25  KLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYR-HEKRVKLQIWDTAGQE 83

Query: 95  RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
           RY  +   YYRGA   +++YDIT+ +SFN  Q W  +++ +   +  + LVGNK D+ E+
Sbjct: 84  RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEE 143

Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT 193
           R VP + G   AE+ G  F E SAK   ++ Q FE L+ 
Sbjct: 144 RVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVD 182

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score =  228 bits (584), Expect = 5e-77
 Identities = 60/159 (37%), Positives = 93/159 (58%), Gaps = 1/159 (0%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           K++++G+S VGK+  + R+    F P    TVG  F  +TI   +   +K +IWDTAG E
Sbjct: 10  KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYR-NDKRIKLQIWDTAGLE 68

Query: 95  RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
           RY  +   YYRGA   +++YDIT+ +SFN  Q W  +++ +   +  + LVGNK D+ ++
Sbjct: 69  RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDE 128

Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT 193
           R V ++ G + A+  G  F E SAK   N+ Q FE L+ 
Sbjct: 129 RVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVD 167

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score =  227 bits (581), Expect = 8e-77
 Identities = 59/176 (33%), Positives = 97/176 (55%), Gaps = 6/176 (3%)

Query: 23  NAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTT 82
           +     +++   K++++GDS VGK+C+  RF  G+F   ++ T+G  F  + + + D   
Sbjct: 10  SLVPRGSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDI-DGER 68

Query: 83  VKFEIWDTAGQERY-AALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSP-DI 140
           +K ++WDTAGQER+  ++   YYR     V VYD+T+  SF+    W++E ++H    DI
Sbjct: 69  IKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDI 128

Query: 141 VMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTA---DNINQLFEVLIT 193
              LVGNK DL    +VP     ++A+ + M   ETSAK     D++  +F  L  
Sbjct: 129 PRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAH 184

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score =  225 bits (577), Expect = 2e-76
 Identities = 69/159 (43%), Positives = 104/159 (65%), Gaps = 2/159 (1%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           K++L+GDSGVGKSC+++RFV  +F+P+   T+G  F  +T+ + +   VK +IWDTAGQE
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDI-NGKKVKLQIWDTAGQE 63

Query: 95  RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
           R+  +   YYRGA   ++VYDIT   +F   + W K + +H + +  + LVGNK+D+ E 
Sbjct: 64  RFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ET 122

Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT 193
           R V A  G   A++ G+ FIE+SAK  DN+N++F  L  
Sbjct: 123 RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAK 161

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score =  226 bits (579), Expect = 2e-76
 Identities = 67/190 (35%), Positives = 105/190 (55%), Gaps = 6/190 (3%)

Query: 5   GSVPARSSGQSGGLNNLENAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKV 64
           GS        SG    L   GS    + +++++++G  GVGK+ ++ RF    F    K 
Sbjct: 2   GSSHHHHHHSSG----LVPRGSPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKS 57

Query: 65  TVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNK 124
           TVG  F  +T+ L     ++ +IWDTAGQER+ ++   YYR A   ++VYDIT  ++F+ 
Sbjct: 58  TVGVDFKIKTVEL-RGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDD 116

Query: 125 AQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEK-NGMFFIETSAKTADN 183
              W+K + K+ S D  + LVGNK D    RE+  Q G ++A++  GM F E SAK   N
Sbjct: 117 LPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFN 176

Query: 184 INQLFEVLIT 193
           ++++F  L+ 
Sbjct: 177 VDEIFLKLVD 186

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score =  224 bits (574), Expect = 7e-76
 Identities = 62/159 (38%), Positives = 96/159 (60%), Gaps = 2/159 (1%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           KL+++GDSGVGKS ++LRF    F  +   T+G  F  +T+ + +   VK +IWDTAGQE
Sbjct: 11  KLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEI-NGEKVKLQIWDTAGQE 69

Query: 95  RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
           R+  +   YYRG    +VVYD+TS +SF   + W+ E+ ++   D+   LVGNK D  E+
Sbjct: 70  RFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQN-CDDVCRILVGNKNDDPER 128

Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT 193
           + V  +D  ++A + G+   ETSAK   N+ ++F  +  
Sbjct: 129 KVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITE 167

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score =  225 bits (575), Expect = 1e-75
 Identities = 67/159 (42%), Positives = 104/159 (65%), Gaps = 2/159 (1%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           K++L+GDSGVGKSC+++RFV  +F+P+   T+G  F  +T+ + +   VK ++WDTAGQE
Sbjct: 22  KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDI-NGKKVKLQLWDTAGQE 80

Query: 95  RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
           R+  +   YYRGA   ++VYD+T   +F   + W K + +H + +  + LVGNK+D+ E 
Sbjct: 81  RFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ET 139

Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT 193
           R V A  G   A++ G+ FIE+SAK  DN+N++F  L  
Sbjct: 140 RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAK 178

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score =  223 bits (570), Expect = 3e-75
 Identities = 55/164 (33%), Positives = 87/164 (53%), Gaps = 7/164 (4%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           K++LLGD GVGKS ++ R+V  +FD     T+G  FL++ + + D   V  +IWDTAGQE
Sbjct: 9   KVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEV-DGHFVTMQIWDTAGQE 67

Query: 95  RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSP----DIVMALVGNKAD 150
           R+ +L   +YRG+   ++ + +    SF     W KE   +            ++GNK D
Sbjct: 68  RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKID 127

Query: 151 LHEKREVPAQDGIEYAEKNG-MFFIETSAKTADNINQLFEVLIT 193
           +  +R+V  ++   +   NG   + ETSAK A N+   FE  + 
Sbjct: 128 I-SERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVR 170

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score =  223 bits (570), Expect = 3e-75
 Identities = 63/171 (36%), Positives = 105/171 (61%), Gaps = 2/171 (1%)

Query: 24  AGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTS-KVTVGASFLSQTIALQDSTT 82
               D  ++  K++L+GDSGVGK+C+++RF  G F   +   TVG  F ++ + + D   
Sbjct: 1   GSGVDFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDV-DGVK 59

Query: 83  VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVM 142
           VK ++WDTAGQER+ ++   YYR A   +++YD+T+  SF+  Q W+ E+ ++   D+ +
Sbjct: 60  VKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVAL 119

Query: 143 ALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT 193
            L+GNK D   +R V  +DG + A++ G+ F+ETSAKT  N++  F  +  
Sbjct: 120 MLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAK 170

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score =  222 bits (567), Expect = 3e-74
 Identities = 66/203 (32%), Positives = 104/203 (51%), Gaps = 18/203 (8%)

Query: 1   MGCSGSVPARSSGQSGGLNNLENAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDP 60
           MG S      SSG             S   +  +KL+ LGDSGVGK+  + R+   +F+P
Sbjct: 1   MGSSHHHHHHSSGLV--------PRGSGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNP 52

Query: 61  TSKVTVGASFLSQTIALQD---------STTVKFEIWDTAGQERYAALAPLYYRGAAVAV 111
               TVG  F  + +             +  V  ++WDTAGQER+ +L   ++R A   +
Sbjct: 53  KFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFL 112

Query: 112 VVYDITSPDSFNKAQYWVKELQKHGSP-DIVMALVGNKADLHEKREVPAQDGIEYAEKNG 170
           +++D+TS  SF   + W+ +LQ +    +  + L+GNKADL ++REV  +   E A+K G
Sbjct: 113 LMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYG 172

Query: 171 MFFIETSAKTADNINQLFEVLIT 193
           + + ETSA T  N+ +  E L+ 
Sbjct: 173 IPYFETSAATGQNVEKAVETLLD 195

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score =  219 bits (560), Expect = 2e-73
 Identities = 55/169 (32%), Positives = 95/169 (56%), Gaps = 10/169 (5%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDST---------TVKF 85
           K + LGDSGVGK+ ++ ++  G+F+     TVG  F  + +  + +           +  
Sbjct: 13  KFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHL 72

Query: 86  EIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHG-SPDIVMAL 144
           ++WDTAG ER+ +L   ++R A   ++++D+T+  SF   + W+ +LQ H  S +  + L
Sbjct: 73  QLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVL 132

Query: 145 VGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT 193
            GNK+DL ++R V  ++  E AEK G+ + ETSA    NI+   E+L+ 
Sbjct: 133 CGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLD 181

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score =  211 bits (540), Expect = 2e-70
 Identities = 60/185 (32%), Positives = 91/185 (49%), Gaps = 5/185 (2%)

Query: 9   ARSSGQSGGLNNLENAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGA 68
                 S G  NL   G    +    K+V+LG   VGK+ +  +FV G+F      TV  
Sbjct: 2   HHHHHHSSGRENLYFQGMPLVRY--RKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVEN 59

Query: 69  SFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYW 128
           ++ S+ + L         + DTAGQ+ Y+ L   +  G    V+VY +TS  SF   +  
Sbjct: 60  TY-SKIVTL-GKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESL 117

Query: 129 VKELQK-HGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQL 187
            ++L + HG   + + LVGNKADL  +REV A +G + AE  G  F+E+SA+       +
Sbjct: 118 YQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGI 177

Query: 188 FEVLI 192
           F  +I
Sbjct: 178 FTKVI 182

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score =  217 bits (554), Expect = 1e-68
 Identities = 35/183 (19%), Positives = 73/183 (39%), Gaps = 11/183 (6%)

Query: 18  LNNLENAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIAL 77
           +    + G +      +K+ L+GD   GK+ ++ + +   FDP    T G + +++    
Sbjct: 26  IEEARSKGEALVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPN 85

Query: 78  Q-------DSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVK 130
                   +     F  WD  GQE   A    +   ++V +++ D     + +   YW++
Sbjct: 86  IKGLENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSR---TDSNKHYWLR 142

Query: 131 ELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEV 190
            ++K+G     + +V NK D +    +  +   E        F   S K  D +  + + 
Sbjct: 143 HIEKYG-GKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKS 201

Query: 191 LIT 193
           L +
Sbjct: 202 LKS 204

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score =  206 bits (526), Expect = 1e-68
 Identities = 36/173 (20%), Positives = 82/173 (47%), Gaps = 14/173 (8%)

Query: 33  RVKLVLLGDSGVGKSCIVLRFVRGQFDPT--SKVTVGASFLSQTIALQDST--TVKFEIW 88
           R+KL+++G++G GK+ ++ + ++ +         TVG       I ++D     +   +W
Sbjct: 2   RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVW 61

Query: 89  DTAGQERYAALAPLYYRGAAVAVVVYDITSPDS-FNKAQYWVKELQKHGSPDIVMALVGN 147
           D AG+E + +  P +    A+ + VYD++   +  +  + W+  ++   S   V+ LVG 
Sbjct: 62  DFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVI-LVGT 120

Query: 148 KADLHEKRE---VPAQDGIEYAEKNGMFFI-----ETSAKTADNINQLFEVLI 192
             D+ ++++     ++   E   K G   I       + + +D + +L + +I
Sbjct: 121 HLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTII 173

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score =  205 bits (524), Expect = 3e-68
 Identities = 45/160 (28%), Positives = 71/160 (44%), Gaps = 3/160 (1%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           K++L+G+SGVGKS +   F   Q D   ++        + I + D   V   ++D   Q 
Sbjct: 4   KVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMV-DKEEVTLIVYDIWEQG 62

Query: 95  RYAALAP-LYYRGAAVAVVVYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLH 152
                      +     ++V+ +T   SF+K    +  L+      D+ + LVGNK+DL 
Sbjct: 63  DAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA 122

Query: 153 EKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
             REV  ++G   A       IETSA    N  +LFE  +
Sbjct: 123 RSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAV 162

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score =  204 bits (522), Expect = 1e-67
 Identities = 48/174 (27%), Positives = 73/174 (41%), Gaps = 3/174 (1%)

Query: 22  ENAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDST 81
           EN      K+   K++L+G+SGVGKS +   F   Q D   +         + I + D  
Sbjct: 12  ENLYFQGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMV-DKE 70

Query: 82  TVKFEIWDTAGQERYAALAP-LYYRGAAVAVVVYDITSPDSFNKAQYWVKEL-QKHGSPD 139
            V   ++D   Q            +     ++V+ +T   SF+K    +  L       D
Sbjct: 71  EVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHD 130

Query: 140 IVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT 193
           + + LVGNK+DL   REV  ++G   A       IETSA    N  +LFE  + 
Sbjct: 131 LPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVR 184

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score =  202 bits (517), Expect = 4e-67
 Identities = 57/178 (32%), Positives = 99/178 (55%), Gaps = 4/178 (2%)

Query: 17  GLNNLENAGSSDAKNLRV-KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTI 75
           G   +   G     +L + K++++G  GVGKS + L+F+  +F    + T   S+  + +
Sbjct: 1   GSPGISGGGGGSQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKV 59

Query: 76  ALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKE-LQK 134
            L D   V+ +I DTAGQE YAA+   Y+R     + V+ IT  +SF     + ++ L+ 
Sbjct: 60  VL-DGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRV 118

Query: 135 HGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
               ++   LVGNK+DL +KR+V  ++    AE+  + ++ETSAKT  N++++F  L+
Sbjct: 119 KEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLM 176

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score =  202 bits (517), Expect = 4e-67
 Identities = 50/165 (30%), Positives = 82/165 (49%), Gaps = 3/165 (1%)

Query: 29  AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIW 88
            ++   K+ +LG   VGKS + ++FV GQF  +   T+  +F ++ I + +      ++ 
Sbjct: 2   PQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITV-NGQEYHLQLV 59

Query: 89  DTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKE-LQKHGSPDIVMALVGN 147
           DTAGQ+ Y+     Y       ++VY +TS  SF   +    + L   G   I + LVGN
Sbjct: 60  DTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGN 119

Query: 148 KADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
           K DLH +R +  ++G   AE     F+E+SAK       +F  +I
Sbjct: 120 KKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRII 164

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score =  201 bits (513), Expect = 9e-67
 Identities = 53/159 (33%), Positives = 93/159 (58%), Gaps = 3/159 (1%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           K++++G  GVGKS + L+F+  +F    + T   S+  + + L D   V+ +I DTAGQE
Sbjct: 6   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVL-DGEEVQIDILDTAGQE 63

Query: 95  RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKE-LQKHGSPDIVMALVGNKADLHE 153
            YAA+   Y+R     + V+ IT  +SF     + ++ L+     ++   LVGNK+DL +
Sbjct: 64  DYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED 123

Query: 154 KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
           KR+V  ++    A++  + ++ETSAKT  N++++F  L+
Sbjct: 124 KRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLM 162

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score =  199 bits (508), Expect = 1e-65
 Identities = 64/185 (34%), Positives = 91/185 (49%), Gaps = 7/185 (3%)

Query: 10  RSSGQSGGLNNLENAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGAS 69
            SSG   G  NL     S AK+  VKL + G +GVGKS +V+RF+  +F      T+ ++
Sbjct: 7   HSSGVDLGTENLYF--QSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLEST 64

Query: 70  FLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWV 129
           +      + D   V  EI DTAGQE        + R     V+VYDIT   SF +     
Sbjct: 65  Y-RHQATI-DDEVVSMEILDTAGQEDTIQRE-GHMRWGEGFVLVYDITDRGSFEEVLPLK 121

Query: 130 KELQK-HGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTAD-NINQL 187
             L +     ++ + LVGNKADL   R+V  ++G + A +    F E SA T + NI ++
Sbjct: 122 NILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEI 181

Query: 188 FEVLI 192
           F  L 
Sbjct: 182 FYELC 186

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score =  199 bits (508), Expect = 2e-65
 Identities = 54/159 (33%), Positives = 93/159 (58%), Gaps = 3/159 (1%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           K++++G  GVGKS + L+F+  +F    + T   S+  + + L D   V+ +I DTAGQE
Sbjct: 16  KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVL-DGEEVQIDILDTAGQE 73

Query: 95  RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKE-LQKHGSPDIVMALVGNKADLHE 153
            YAA+   Y+R     + V+ IT  +SF     + ++ L+     ++   LVGNK+DL +
Sbjct: 74  DYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED 133

Query: 154 KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
           KR+V  ++    AE+  + ++ETSAKT  N++++F  L+
Sbjct: 134 KRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLM 172

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score =  197 bits (504), Expect = 3e-65
 Identities = 50/159 (31%), Positives = 85/159 (53%), Gaps = 3/159 (1%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           KLV++G  GVGKS + ++F++  F      T+  S+ ++  ++ D    + +I DTAGQE
Sbjct: 11  KLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSY-TKICSV-DGIPARLDILDTAGQE 68

Query: 95  RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKE-LQKHGSPDIVMALVGNKADLHE 153
            + A+   Y R     ++V+ I    SFN+      + L+     D  + LVGNKADL  
Sbjct: 69  EFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLES 128

Query: 154 KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
           +R+VP  +   +   + + + E SAK   N+++ FE L+
Sbjct: 129 QRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLV 167

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score =  195 bits (498), Expect = 2e-64
 Identities = 52/160 (32%), Positives = 81/160 (50%), Gaps = 4/160 (2%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           ++ + G  GVGKS +VLRFV+G F  +   TV  ++  Q I+  D +    +I DT G  
Sbjct: 5   RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISC-DKSICTLQITDTTGSH 62

Query: 95  RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQ--KHGSPDIVMALVGNKADLH 152
           ++ A+  L        ++VY ITS  S  + +   +++   K     I + LVGNK D  
Sbjct: 63  QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 122

Query: 153 EKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
             REV + +    A      F+ETSAK   N+ +LF+ L+
Sbjct: 123 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELL 162

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score =  194 bits (495), Expect = 6e-64
 Identities = 53/159 (33%), Positives = 89/159 (55%), Gaps = 3/159 (1%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           K+V+LG  GVGKS + ++FV G F      T+   +  + I + DS+    EI DTAG E
Sbjct: 5   KVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY-RKEIEV-DSSPSVLEILDTAGTE 62

Query: 95  RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKE-LQKHGSPDIVMALVGNKADLHE 153
           ++A++  LY +     ++VY + +  SF   +    + ++      + + LVGNK DL  
Sbjct: 63  QFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLES 122

Query: 154 KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
           +REV + +G   AE+ G  F+ETSAK+   +++LF  ++
Sbjct: 123 EREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIV 161

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score =  193 bits (492), Expect = 2e-63
 Identities = 50/166 (30%), Positives = 76/166 (45%), Gaps = 13/166 (7%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQF----DPTSKVTVGASFLSQTIALQDSTTVKFEIWDT 90
           ++VLLGD GVGK+ +   F   Q     +       G     +T+ + D       + DT
Sbjct: 6   RVVLLGDPGVGKTSLASLFAGKQERDLHEQL-----GEDVYERTLTV-DGEDTTLVVVDT 59

Query: 91  AGQER--YAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGN 147
              E+   +       +G +  V+VY I    SF  A     +L++ H +  + + LVGN
Sbjct: 60  WEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGN 119

Query: 148 KADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT 193
           KADL   REV  ++G   A      FIETSA    N+ +LFE ++ 
Sbjct: 120 KADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVR 165

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score =  192 bits (491), Expect = 2e-63
 Identities = 49/159 (30%), Positives = 76/159 (47%), Gaps = 4/159 (2%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           K++LLG  GVGKS +   F   +  P ++   G ++  ++I + D       ++D   Q+
Sbjct: 4   KVLLLGAPGVGKSALARIFGGVEDGPEAE-AAGHTY-DRSIVV-DGEEASLMVYDIWEQD 60

Query: 95  RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHE 153
               L           V+VY +T   SF KA     +L++   + D+ + LVGNK+DL  
Sbjct: 61  GGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR 120

Query: 154 KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
            REV   +G   A      FIETSA    N+  LFE ++
Sbjct: 121 SREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV 159

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score =  191 bits (487), Expect = 9e-63
 Identities = 52/159 (32%), Positives = 85/159 (53%), Gaps = 4/159 (2%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           KLV++G  GVGKS + ++ ++  F      T+  S+  + + + D  T   +I DTAGQE
Sbjct: 5   KLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVI-DGETCLLDILDTAGQE 62

Query: 95  RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHE 153
            Y+A+   Y R     + V+ I +  SF     + +++++   S D+ M LVGNK+DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDL-A 121

Query: 154 KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
            R V ++   + A   G+ +IETSAKT   +   F  L+
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score =  191 bits (486), Expect = 4e-62
 Identities = 52/176 (29%), Positives = 87/176 (49%), Gaps = 6/176 (3%)

Query: 22  ENAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKV-TVGASFLSQTIAL--Q 78
           ++  SS++ N   ++VL+G+ GVGKS +   F        S    +G     +T+ +  +
Sbjct: 26  DSVISSESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGE 85

Query: 79  DSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQK-HGS 137
            +T +  ++W+  G+  +  L     +     ++VY IT   SF KA     +L++   +
Sbjct: 86  SATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQT 143

Query: 138 PDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT 193
            DI + LVGNK+DL   REV   +G   A      FIETSA    N+ +LFE ++ 
Sbjct: 144 EDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVR 199

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score =  190 bits (485), Expect = 5e-62
 Identities = 53/160 (33%), Positives = 84/160 (52%), Gaps = 5/160 (3%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           ++V+ G  GVGKS +VLRFV+G F  T   T+  ++  Q I+  D +    +I DT G  
Sbjct: 10  RVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISC-DKSVCTLQITDTTGSH 67

Query: 95  RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQ--KHGSPDIVMALVGNKADLH 152
           ++ A+  L        ++V+ +TS  S  +     K +   K    DI + LVGNK D  
Sbjct: 68  QFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDET 127

Query: 153 EKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
           + REV  ++    A++    F+ETSAK   N+ +LF+ L+
Sbjct: 128 Q-REVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELL 166

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score =  187 bits (477), Expect = 5e-61
 Identities = 54/159 (33%), Positives = 84/159 (52%), Gaps = 4/159 (2%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           KLV++G  GVGKS + ++ ++  F      T+  S+  + + + D  T   +I DTAGQE
Sbjct: 23  KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVI-DGETCLLDILDTAGQE 80

Query: 95  RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHE 153
            Y+A+   Y R     + V+ I +  SF     + +++++   S D+ M LVGNK DL  
Sbjct: 81  EYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT 140

Query: 154 KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
            R V  +   E A+  G+ FIETSAKT   +   F  L+
Sbjct: 141 -RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLV 178

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score =  187 bits (477), Expect = 5e-61
 Identities = 53/179 (29%), Positives = 86/179 (48%), Gaps = 4/179 (2%)

Query: 16  GGLNNLENAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTI 75
           G L ++  +          KLV++GD GVGKS + ++F +  F      T+  S+  +  
Sbjct: 1   GPLGSMATSAVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHT 59

Query: 76  ALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKH 135
            + D+     ++ DTAGQE ++A+   Y R     ++VY +T   SF     + + + + 
Sbjct: 60  EI-DNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRV 118

Query: 136 -GSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTAD-NINQLFEVLI 192
                  M LV NK DL   R+V    G E A K  + +IETSAK    N+++ F  L+
Sbjct: 119 KDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLV 177

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score =  186 bits (475), Expect = 5e-61
 Identities = 57/160 (35%), Positives = 90/160 (56%), Gaps = 4/160 (2%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           KLV+LG  GVGKS + ++FV+G F      T+  S+  + + + D      EI DTAG E
Sbjct: 5   KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEV-DCQQCMLEILDTAGTE 62

Query: 95  RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKE-LQKHGSPDIVMALVGNKADLHE 153
           ++ A+  LY +      +VY IT+  +FN  Q   ++ L+   + D+ M LVGNK DL +
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122

Query: 154 KREVPAQDGIEYAEK-NGMFFIETSAKTADNINQLFEVLI 192
           +R V  + G   A +     F+E+SAK+  N+N++F  L+
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLV 162

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score =  186 bits (475), Expect = 1e-60
 Identities = 53/159 (33%), Positives = 85/159 (53%), Gaps = 4/159 (2%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           KLV++G  GVGKS + ++ ++  F      T+  S+  + + + D  T   +I DTAGQE
Sbjct: 6   KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVI-DGETCLLDILDTAGQE 63

Query: 95  RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHE 153
            Y+A+   Y R     + V+ I +  SF    ++ +++++   S D+ M LVGNK DL  
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS 123

Query: 154 KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
            R V  +   + A   G+ FIETSAKT   ++  F  L+
Sbjct: 124 -RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLV 161

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score =  186 bits (474), Expect = 1e-60
 Identities = 42/163 (25%), Positives = 73/163 (44%), Gaps = 7/163 (4%)

Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           V L +LG  G GKS + ++F+  +F       +  ++ S    + D   V   + DTA  
Sbjct: 22  VNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETV-DHQPVHLRVMDTADL 79

Query: 94  ERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQ---KHGSPDIVMALVGNKAD 150
           +        Y   A   +VVY + S  SF+ +  +++ L    K     I   L+GNK D
Sbjct: 80  DTPRNC-ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLD 138

Query: 151 LHEKREVPAQDGIEYAEKNGMFFIETSAKT-ADNINQLFEVLI 192
           + + R+V   +G+  A + G  F E SA    +++  +F   +
Sbjct: 139 MAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAV 181

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score =  184 bits (469), Expect = 1e-59
 Identities = 49/163 (30%), Positives = 80/163 (49%), Gaps = 6/163 (3%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKV-TVGASFLSQTIAL--QDSTTVKFEIWDTA 91
           ++VL+G+ GVGKS +   F        S    +G     +T+ +  + +T +  ++W+  
Sbjct: 8   RVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENK 67

Query: 92  GQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKAD 150
           G+  +  L     +     ++VY IT   SF KA     +L++   + DI + LVGNK+D
Sbjct: 68  GENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSD 125

Query: 151 LHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT 193
           L   REV   +G   A      FIETSA    N+ +LFE ++ 
Sbjct: 126 LVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVR 168

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score =  169 bits (430), Expect = 5e-54
 Identities = 34/166 (20%), Positives = 65/166 (39%), Gaps = 20/166 (12%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQF---DPTSKVTVGASFLSQTIALQDSTTVKFEIWDTA 91
           +L +LGD+  GKS ++ RF+ G +   +     T    +  + + + D  T    I + A
Sbjct: 9   RLGVLGDARSGKSSLIHRFLTGSYQVLEK----TESEQY-KKEMLV-DGQTHLVLIREEA 62

Query: 92  GQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQK---HGSPDIVMALVG-- 146
           G          +   A   + V+ +   +SF        +L      G   + +ALVG  
Sbjct: 63  GAPDA-----KFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQ 117

Query: 147 NKADLHEKREVPAQDGIEY-AEKNGMFFIETSAKTADNINQLFEVL 191
           ++      R V         A+     + ET A    N++++F+ +
Sbjct: 118 DRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEV 163

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score =  167 bits (425), Expect = 4e-53
 Identities = 31/166 (18%), Positives = 61/166 (36%), Gaps = 20/166 (12%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQF----DPTSKVTVGASFLSQTIALQDSTTVKFEIWDT 90
           K+ ++G+   GKS +V R++ G +     P      G  F  + I + D  +    I D 
Sbjct: 22  KVGIVGNLSSGKSALVHRYLTGTYVQEESPE-----GGRF-KKEIVV-DGQSYLLLIRDE 74

Query: 91  AGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKA 149
            G          +       V V+ +    SF     +   L     + ++ M LVG + 
Sbjct: 75  GGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQD 129

Query: 150 DLHE--KREVPAQDGIEYA-EKNGMFFIETSAKTADNINQLFEVLI 192
            +     R +      + + +     + ET A    N+ ++F+ + 
Sbjct: 130 AISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVA 175

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score =  151 bits (383), Expect = 1e-46
 Identities = 51/186 (27%), Positives = 88/186 (47%), Gaps = 7/186 (3%)

Query: 11  SSGQSGGLNNLENAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASF 70
           S+      +    AG  +     +K+V++GD  VGK+C++L F +G+       TV  +F
Sbjct: 1   SNAMLAFSDMNTGAGKIENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF 60

Query: 71  LSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQY-WV 129
                    +      +WDTAGQE Y  L PL Y  + V ++ + + +  SF+     W 
Sbjct: 61  SHVMKY--KNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWE 118

Query: 130 KELQKHGSPDIVMALVGNKADLHE--KREVPAQDGIEYAEKNG-MFFIETSAKTADNINQ 186
            E++ +        LVG K DL +    +V  Q+G +  +K G + +IE S+     +N+
Sbjct: 119 PEIKHY-IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNE 177

Query: 187 LFEVLI 192
           +FE  +
Sbjct: 178 VFEKSV 183

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score =  145 bits (369), Expect = 1e-44
 Identities = 53/176 (30%), Positives = 92/176 (52%), Gaps = 15/176 (8%)

Query: 29  AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIW 88
           + +  +K V +GD  VGK+C+++ +    F      TV  +F +  +   +  TV   +W
Sbjct: 4   SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV--VNGATVNLGLW 61

Query: 89  DTAGQERYAALAPLYYRGAAVAVVVYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGN 147
           DTAGQE Y  L PL YRGA V ++ + + S  S+ N ++ W+ EL+ + +P + + LVG 
Sbjct: 62  DTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHY-APGVPIVLVGT 120

Query: 148 KADLHEKRE----------VPAQDGIEYAEKNG-MFFIETSAKTADNINQLFEVLI 192
           K DL + ++          +    G E  +  G   +IE S+K+ +N+  +F+  I
Sbjct: 121 KLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAI 176

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score =  145 bits (368), Expect = 2e-44
 Identities = 61/206 (29%), Positives = 94/206 (45%), Gaps = 25/206 (12%)

Query: 1   MGCSGSVPARSSGQSGGLNNLENAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDP 60
           MG S      SSG             S    +R KLV++GD   GK+C+++ F + QF  
Sbjct: 1   MGSSHHHHHHSSGLV--------PRGSHMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPE 52

Query: 61  TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPD 120
               TV  ++        D   V+  +WDTAGQE Y  L PL Y    V ++ + I SPD
Sbjct: 53  VYVPTVFENY--IADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPD 110

Query: 121 SFNKAQY-WVKELQKHGSPDIVMALVGNKADLHEKRE------------VPAQDGIEYAE 167
           S       W  E++    P++ + LVGNK DL +               V +++G + A 
Sbjct: 111 SLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMAN 169

Query: 168 KNG-MFFIETSAKTADNINQLFEVLI 192
           +     ++E SAKT + + ++FE+  
Sbjct: 170 RISAFGYLECSAKTKEGVREVFEMAT 195

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score =  145 bits (367), Expect = 5e-44
 Identities = 58/179 (32%), Positives = 97/179 (54%), Gaps = 15/179 (8%)

Query: 25  GSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKV-TVGASFLSQTIALQDSTTV 83
           GS  + +  +K V +GD  VGK+C+++ +   +F PT  + TV  +F +      D   V
Sbjct: 1   GSHMSVSKFIKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANVAV--DGQIV 57

Query: 84  KFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSF-NKAQYWVKELQKHGSPDIVM 142
              +WDTAGQE Y+ L PL YRGA + V+ + + S  S+ N  + W+ EL++  +P++ +
Sbjct: 58  NLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRF-APNVPI 116

Query: 143 ALVGNKADLHEKRE--------VPAQDGIEYAEKNGMF-FIETSAKTADNINQLFEVLI 192
            LVG K DL + +         + +  G E  ++ G   +IE S+KT  N+  +F+  I
Sbjct: 117 VLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAI 175

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score =  143 bits (363), Expect = 2e-43
 Identities = 60/201 (29%), Positives = 92/201 (45%), Gaps = 21/201 (10%)

Query: 10  RSSGQSGGLNNLENAGSSDAKN----LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVT 65
            SSG   G  NL     +  +       VK+VL+GD G GK+ +++ F  G F  +   T
Sbjct: 7   HSSGVDLGTENLYFQSMAGEEAPPGVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPT 66

Query: 66  VGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSF-NK 124
           V   +            V   IWDTAGQ+ Y  L PL+Y  A+V ++ +D+TSP+SF N 
Sbjct: 67  VFERY--MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNI 124

Query: 125 AQYWVKELQKHGSPDIVMALVGNKADLHEKRE------------VPAQDGIEYAEKNG-M 171
              W  E+       + + +VG K DL + +             V    G E A   G +
Sbjct: 125 FNRWYPEVNHF-CKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAV 183

Query: 172 FFIETSAKTADNINQLFEVLI 192
            ++E SA+  DN++ +F+   
Sbjct: 184 AYLECSARLHDNVHAVFQEAA 204

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score =  142 bits (359), Expect = 4e-43
 Identities = 59/209 (28%), Positives = 96/209 (45%), Gaps = 26/209 (12%)

Query: 1   MGCSGSVPARSSG---QSGGLNNLENAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQ 57
           MG S      SSG   +   + NL   G +      +K V++GD  VGK+C+++ +    
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMENLYFQGQA------IKCVVVGDGAVGKTCLLISYTTNA 54

Query: 58  FDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDIT 117
           F      TV  ++ +  +   D   V   +WDTAGQE Y  L PL Y    V ++ + + 
Sbjct: 55  FPGEYIPTVFDNYSANVMV--DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLV 112

Query: 118 SPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLHEKRE------------VPAQDGIE 164
           SP SF N    W  E++ H  P+  + LVG K DL + ++            +    G+ 
Sbjct: 113 SPASFENVRAKWYPEVRHH-CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA 171

Query: 165 YAEKNG-MFFIETSAKTADNINQLFEVLI 192
            A++ G + ++E SA T   +  +F+  I
Sbjct: 172 MAKEIGAVKYLECSALTQRGLKTVFDEAI 200

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score =  141 bits (356), Expect = 1e-42
 Identities = 54/175 (30%), Positives = 84/175 (48%), Gaps = 17/175 (9%)

Query: 32  LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTA 91
           +R KLV++GD   GK+C+++ F + +F      TV  ++        D   V+  +WDTA
Sbjct: 24  IRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENY--VADIEVDGKQVELALWDTA 81

Query: 92  GQERYAALAPLYYRGAAVAVVVYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKAD 150
           GQE Y  L PL Y    V ++ + + SPDS  N  + WV E++    P++ + LV NK D
Sbjct: 82  GQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHF-CPNVPIILVANKKD 140

Query: 151 LHEKRE------------VPAQDGIEYAEKNG-MFFIETSAKTADNINQLFEVLI 192
           L                 V   DG   A +     ++E SAKT + + ++FE   
Sbjct: 141 LRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETAT 195

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score =  140 bits (355), Expect = 2e-42
 Identities = 52/184 (28%), Positives = 87/184 (47%), Gaps = 17/184 (9%)

Query: 23  NAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTT 82
              +  A+   VK VL+GD  VGK+ +V+ +    +      T   +F +      D   
Sbjct: 10  RGRAGGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSV--DGRP 67

Query: 83  VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSF-NKAQYWVKELQKHGSPDIV 141
           V+ ++ DTAGQ+ +  L PL Y    + ++ + + SP SF N ++ WV E++ H  P   
Sbjct: 68  VRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCH-CPKAP 126

Query: 142 MALVGNKADLHEKRE------------VPAQDGIEYAEKNG-MFFIETSAKTADNINQLF 188
           + LVG ++DL E  +            VP +     AE+     +IE SA T  N+ ++F
Sbjct: 127 IILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVF 186

Query: 189 EVLI 192
           +  I
Sbjct: 187 DAAI 190

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score =  134 bits (340), Expect = 3e-40
 Identities = 47/183 (25%), Positives = 82/183 (44%), Gaps = 17/183 (9%)

Query: 26  SSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKF 85
           +     L +K V++GD  VGK+C+++ +    F      TV   +               
Sbjct: 11  AHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTV--GGKQYLL 68

Query: 86  EIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSF-NKAQYWVKELQKHGSPDIVMAL 144
            ++DTAGQE Y  L PL Y    V ++ + + +P SF N  + WV EL K  +P++   L
Sbjct: 69  GLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPEL-KEYAPNVPFLL 127

Query: 145 VGNKADLHEKRE------------VPAQDGIEYAEKNG-MFFIETSAKTADNINQLFEVL 191
           +G + DL +  +            +  + G + A++ G   ++E SA T   +  +F+  
Sbjct: 128 IGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEA 187

Query: 192 ITC 194
           I  
Sbjct: 188 IIA 190

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score =  134 bits (340), Expect = 3e-40
 Identities = 50/204 (24%), Positives = 91/204 (44%), Gaps = 23/204 (11%)

Query: 1   MGCSGSVPARSSGQSGGLNNLENAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDP 60
           MG S      SSG     +++        +N++ K+V++GDS  GK+ ++  F +  F  
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHM-----DPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPE 55

Query: 61  TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPD 120
               TV  ++        D+  ++  +WDT+G   Y  + PL Y  +   ++ +DI+ P+
Sbjct: 56  NYVPTVFENY--TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPE 113

Query: 121 SFNKAQY-WVKELQKHGSPDIVMALVGNKADLHEKRE------------VPAQDGIEYAE 167
           + +     W  E+Q+   P+  M LVG K+DL                 V    G   A+
Sbjct: 114 TLDSVLKKWKGEIQEF-CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAK 172

Query: 168 KNG-MFFIETSAKTA-DNINQLFE 189
           + G   +IE SA  + +++  +F 
Sbjct: 173 QIGAATYIECSALQSENSVRDIFH 196

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score =  134 bits (338), Expect = 4e-40
 Identities = 44/175 (25%), Positives = 82/175 (46%), Gaps = 18/175 (10%)

Query: 30  KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWD 89
           +N++ K+V++GDS  GK+ ++  F +  F      TV  ++        D+  ++  +WD
Sbjct: 4   QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY--TASFEIDTQRIELSLWD 61

Query: 90  TAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQY-WVKELQKHGSPDIVMALVGNK 148
           T+G   Y  + PL Y  +   ++ +DI+ P++ +     W  E+Q+   P+  M LVG K
Sbjct: 62  TSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF-CPNTKMLLVGCK 120

Query: 149 ADLHEKRE------------VPAQDGIEYAEKNG-MFFIETSAKTA-DNINQLFE 189
           +DL                 V    G   A++ G   +IE SA  + +++  +F 
Sbjct: 121 SDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFH 175

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score =  135 bits (340), Expect = 5e-40
 Identities = 44/195 (22%), Positives = 81/195 (41%), Gaps = 18/195 (9%)

Query: 15  SGGLNNLENAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQT 74
           SG  N      +      R KLVL+GD   GK+ ++    +  +  T   TV  ++    
Sbjct: 9   SGRENLYFQGRAPQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY--TA 66

Query: 75  IALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSF-NKAQYWVKELQ 133
               +   V+  +WDT+G   Y  + PL Y  +   ++ +DI+ P++  +  + W  E+ 
Sbjct: 67  CLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEIL 126

Query: 134 KHGSPDIVMALVGNKADLHEKRE------------VPAQDGIEYAEKNG-MFFIETSAKT 180
            +  P   + L+G K DL                 +  + G   A++ G   ++E SA T
Sbjct: 127 DY-CPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFT 185

Query: 181 A-DNINQLFEVLITC 194
           +  +I+ +F      
Sbjct: 186 SEKSIHSIFRTASML 200

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score =  132 bits (335), Expect = 1e-39
 Identities = 50/178 (28%), Positives = 85/178 (47%), Gaps = 17/178 (9%)

Query: 29  AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIW 88
                +K V++GD  VGK+C+++ +    F      TV  ++ +  +   D   V   +W
Sbjct: 1   GSPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV--DGKPVNLGLW 58

Query: 89  DTAGQERYAALAPLYYRGAAVAVVVYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGN 147
           DTAGQE Y  L PL Y    V+++ + + SP SF N    W  E++ H  P+  + LVG 
Sbjct: 59  DTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHH-CPNTPIILVGT 117

Query: 148 KADLHEKRE------------VPAQDGIEYAEKNG-MFFIETSAKTADNINQLFEVLI 192
           K DL + ++            +    G+  A++ G + ++E SA T   +  +F+  I
Sbjct: 118 KLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 175

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255

 Score =  105 bits (263), Expect = 3e-28
 Identities = 40/217 (18%), Positives = 69/217 (31%), Gaps = 65/217 (29%)

Query: 40  GDSGVGKSCIVLRFVR--------------GQFDPTSKVTVGASFL---SQTIALQDSTT 82
           G  G+GKSC+  RFVR                 D   +V     FL     + +L+D   
Sbjct: 35  GQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE 94

Query: 83  VKFEIW-------DTAGQERYAALAPLYYRGAAV-------------------------- 109
            K  I        D   Q   +     Y + AA                           
Sbjct: 95  CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQK 154

Query: 110 -----------AVVVYDITSPD--SFNKAQYWVKELQKHGSPD-IVMALVGNKADLHEKR 155
                       ++  D++     +F+    +V  L    +     + +V  K D   +R
Sbjct: 155 QMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVER 214

Query: 156 EVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
            +        ++KN +  +ETSA++  N++  F  L+
Sbjct: 215 YIRDAHTFALSKKN-LQVVETSARSNVNVDLAFSTLV 250

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332

 Score =  100 bits (249), Expect = 1e-25
 Identities = 49/196 (25%), Positives = 86/196 (43%), Gaps = 17/196 (8%)

Query: 8   PARSSGQSGGLNNLENAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVG 67
              +  +   L         +A    +K V++GD  VGK+C+++ +    F P   +   
Sbjct: 130 RDAAEREGVMLIKKTAENIDEAAKELIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTV 188

Query: 68  ASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSF-NKAQ 126
               S  + + D   V   +WDTAG E Y  L PL Y    V ++ + + SP SF +   
Sbjct: 189 FDNYSANVMV-DGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRA 247

Query: 127 YWVKELQKHGSPDIVMALVGNKADLHEKRE------------VPAQDGIEYAEKNG-MFF 173
            W  E++ H  P+  + LVG K DL + ++            +    G+  A++ G + +
Sbjct: 248 KWYPEVRHH-CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKY 306

Query: 174 IETSAKTADNINQLFE 189
           +E SA T   +  +F+
Sbjct: 307 LECSALTQRGLKTVFD 322

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 83.1 bits (205), Expect = 2e-19
 Identities = 31/176 (17%), Positives = 64/176 (36%), Gaps = 17/176 (9%)

Query: 32  LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTA 91
           L  KL+L+G SG GKS +    +   +       +GA+   +   L+    +   +WD  
Sbjct: 2   LGSKLLLMGRSGSGKSSM-RSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCG 60

Query: 92  GQERY-----AALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQ--KHGSPDIVMAL 144
           GQ+ +            ++   V + V+D+ S +     + + K L+  +  SPD  + +
Sbjct: 61  GQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFV 120

Query: 145 VGNKADL---------HEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVL 191
           + +K DL          +       +         +    TS           +++
Sbjct: 121 LLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWDESLYKAWSQIV 176

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 76.9 bits (189), Expect = 6e-18
 Identities = 27/143 (18%), Positives = 58/143 (40%), Gaps = 11/143 (7%)

Query: 18  LNNLENAGSSDAKNL----RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQ 73
           +++  +  S          + +++L+G    GKS I  + V  +  P   + + ++    
Sbjct: 1   MHHHHHHSSGRENLYFQGSKPRILLMGLRRSGKSSI-QKVVFHKMSPNETLFLESTNKIY 59

Query: 74  TIALQDSTTVKFEIWDTAGQERYAALAP---LYYRGAAVAVVVYDITS--PDSFNKAQYW 128
              + +S+ V F+IWD  GQ  +        + +RG    + V D      ++  +    
Sbjct: 60  KDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHIT 119

Query: 129 VKELQKHGSPDIVMALVGNKADL 151
           V +  K  +PD+   +  +K D 
Sbjct: 120 VSKAYKV-NPDMNFEVFIHKVDG 141

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 75.6 bits (186), Expect = 2e-17
 Identities = 35/184 (19%), Positives = 63/184 (34%), Gaps = 20/184 (10%)

Query: 26  SSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKV-----------TVGASFLSQT 74
           +   + +  K+V  G    GK+   L+++  +     K            T+   FL   
Sbjct: 7   NFANREINFKIVYYGPGLSGKTTN-LKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLD 65

Query: 75  IALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYW---VKE 131
           I        +F ++   GQ  Y A   L  RG    V V D         A+      + 
Sbjct: 66  IGEVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMREN 125

Query: 132 LQKHGSP--DIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFI-ETSAKTADNINQLF 188
           L ++G    D+ + +  NK DL     +P +      +  G F + E  A     + +  
Sbjct: 126 LAEYGLTLDDVPIVIQVNKRDL--PDALPVEMVRAVVDPEGKFPVLEAVATEGKGVFETL 183

Query: 189 EVLI 192
           + + 
Sbjct: 184 KEVS 187

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331

 Score = 60.1 bits (145), Expect = 4e-11
 Identities = 21/121 (17%), Positives = 44/121 (36%), Gaps = 9/121 (7%)

Query: 36  LVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQER 95
           ++L+G    GKS I  + V     P   + + ++          ST +   + +  GQ  
Sbjct: 2   VLLMGVRRCGKSSI-CKVVFHNMQPLDTLYLESTSNPSLEHF--STLIDLAVMELPGQLN 58

Query: 96  YAALAPL---YYRGAAVAVVVYDITSP--DSFNKAQYWVKELQKHGSPDIVMALVGNKAD 150
           Y   +      ++     V V D      ++       ++   K  +P I + ++ +K D
Sbjct: 59  YFEPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKV-NPSINIEVLIHKVD 117

Query: 151 L 151
            
Sbjct: 118 G 118

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164

 Score = 56.4 bits (137), Expect = 1e-10
 Identities = 35/174 (20%), Positives = 73/174 (41%), Gaps = 22/174 (12%)

Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           ++++++G    GK+ I+ +   G+   T   T+G  F  +T+  ++   + F +WD  GQ
Sbjct: 1   MRILMVGLDAAGKTTILYKLKLGEIVTTIP-TIG--FNVETVEYKN---ISFTVWDVGGQ 54

Query: 94  ERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQK-------HGSPDIVMALVG 146
           ++   L   Y++     + V D    +  N+A+   +EL +         +  +V A   
Sbjct: 55  DKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAR---EELMRMLAEDELRDAVLLVFA--- 108

Query: 147 NKADLHEK---REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLITCTSS 197
           NK DL       E+  + G+        +   T A + D + +  + L     +
Sbjct: 109 NKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRN 162

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171

 Score = 56.4 bits (137), Expect = 2e-10
 Identities = 41/183 (22%), Positives = 72/183 (39%), Gaps = 24/183 (13%)

Query: 25  GSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVK 84
           GS   + +R+  ++LG  G GK+ I+ R   G+   T   T+G  F  +T+  ++   +K
Sbjct: 1   GSHMTREMRI--LILGLDGAGKTTILYRLQVGEVVTTIP-TIG--FNVETVTYKN---LK 52

Query: 85  FEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQK-------HGS 137
           F++WD  G          YY      + V D    D    ++    EL           +
Sbjct: 53  FQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISK---SELVAMLEEEELRKA 109

Query: 138 PDIVMALVGNKADLHE---KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLITC 194
             +V A   NK D+ +     E+    G+   +       +TSA     +++  E L+  
Sbjct: 110 ILVVFA---NKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVET 166

Query: 195 TSS 197
             S
Sbjct: 167 LKS 169

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183

 Score = 55.7 bits (135), Expect = 3e-10
 Identities = 41/174 (23%), Positives = 69/174 (39%), Gaps = 22/174 (12%)

Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           +++++LG  G GK+ I+ R   G+   T   T+G  F  +T++ ++   +K  +WD  GQ
Sbjct: 19  LRILILGLDGAGKTTILYRLQIGEVVTTKP-TIG--FNVETLSYKN---LKLNVWDLGGQ 72

Query: 94  ERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQK-------HGSPDIVMALVG 146
                    YY   A  + V D T  D  + A    KEL           +  +V A   
Sbjct: 73  TSIRPYWRCYYADTAAVIFVVDSTDKDRMSTAS---KELHLMLQEEELQDAALLVFA--- 126

Query: 147 NKADLHEK---REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLITCTSS 197
           NK D        EV  +  +   +      + +SA   + I +  + LI     
Sbjct: 127 NKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKE 180

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187

 Score = 55.7 bits (135), Expect = 4e-10
 Identities = 36/174 (20%), Positives = 69/174 (39%), Gaps = 22/174 (12%)

Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
            K++++G    GK+ I+ +F   +   TS  T+G     + I + +    +F +WD  GQ
Sbjct: 17  HKVIIVGLDNAGKTTILYQFSMNEVVHTSP-TIG--SNVEEIVINN---TRFLMWDIGGQ 70

Query: 94  ERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQK-------HGSPDIVMALVG 146
           E   +    YY      +VV D T  +  +  +   +EL K         +  ++ A   
Sbjct: 71  ESLRSSWNTYYTNTEFVIVVVDSTDRERISVTR---EELYKMLAHEDLRKAGLLIFA--- 124

Query: 147 NKADLHE---KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLITCTSS 197
           NK D+ E     E+     +   + +        A T + + Q  E +++    
Sbjct: 125 NKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKI 178

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186

 Score = 55.3 bits (134), Expect = 4e-10
 Identities = 38/174 (21%), Positives = 66/174 (37%), Gaps = 22/174 (12%)

Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           ++L++LG    GK+ I+ +F     D  S  T+G  F  +T+  +     K  IWD  GQ
Sbjct: 19  LRLLMLGLDNAGKTTILKKFNGEDVDTISP-TLG--FNIKTLEHRG---FKLNIWDVGGQ 72

Query: 94  ERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQK-------HGSPDIVMALVG 146
           +   +    Y+      + V D          Q   +ELQ         G+  ++ A   
Sbjct: 73  KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQ---RELQSLLVEERLAGATLLIFA--- 126

Query: 147 NKADLHEK---REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLITCTSS 197
           NK DL        +     ++    +       SA T +++    + L+   SS
Sbjct: 127 NKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISS 180

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192

 Score = 55.4 bits (134), Expect = 6e-10
 Identities = 34/174 (19%), Positives = 70/174 (40%), Gaps = 22/174 (12%)

Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           ++++++G    GK+ I+ +   G+   T   T+G  F  +T+  ++   + F +WD  GQ
Sbjct: 30  MRILMVGLDAAGKTTILYKLKLGEIVTTIP-TIG--FNVETVEYKN---ICFTVWDVGGQ 83

Query: 94  ERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQK-------HGSPDIVMALVG 146
           ++   L   Y++     + V D    +   ++     ELQK         +  +V A   
Sbjct: 84  DKIRPLWRHYFQNTQGLIFVVDSNDRERVQESA---DELQKMLQEDELRDAVLLVFA--- 137

Query: 147 NKADLHEK---REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLITCTSS 197
           NK D+       E+  + G+++      +   T A     +    + L    S 
Sbjct: 138 NKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSK 191

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189

 Score = 53.8 bits (130), Expect = 2e-09
 Identities = 40/174 (22%), Positives = 70/174 (40%), Gaps = 22/174 (12%)

Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           +++++LG    GK+ I+ R   G    T   TVG     +T+  ++   + FE+WD  GQ
Sbjct: 23  IRVLMLGLDNAGKTSILYRLHLGDVVTTVP-TVG--VNLETLQYKN---ISFEVWDLGGQ 76

Query: 94  ERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQK-------HGSPDIVMALVG 146
                    Y+      + V D T  D    A+    EL           S  ++ A   
Sbjct: 77  TGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAK---HELYALLDEDELRKSLLLIFA--- 130

Query: 147 NKADLHE---KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLITCTSS 197
           NK DL +   + E+  Q G+          +++S+KT D + +  + L+     
Sbjct: 131 NKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERLRE 184

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score = 53.7 bits (130), Expect = 2e-09
 Identities = 50/207 (24%), Positives = 80/207 (38%), Gaps = 32/207 (15%)

Query: 1   MGCSGSVPARSSGQSGGLNNLENAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDP 60
           MG S      SSG     +  E           ++L L+G    GK+  V     GQF+ 
Sbjct: 1   MGSSHHHHHHSSGLVPRGSKEE-----------MELTLVGLQYSGKTTFVNVIASGQFNE 49

Query: 61  TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPD 120
               TVG  F  + I   +   V  ++WD  GQ R+ ++   Y RG +  V + D    +
Sbjct: 50  DMIPTVG--FNMRKITKGN---VTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQE 104

Query: 121 SFNKAQYWVKELQK-------HGSPDIVMALVGNKADLHE---KREVPAQDGIEYAEKNG 170
               ++    EL          G P +V+    NK DL     ++E+  +  +   +   
Sbjct: 105 KIEASK---NELHNLLDKPQLQGIPVLVLG---NKRDLPGALDEKELIEKMNLSAIQDRE 158

Query: 171 MFFIETSAKTADNINQLFEVLITCTSS 197
           +     S K  DNI+   + LI  + S
Sbjct: 159 ICCYSISCKEKDNIDITLQWLIQHSKS 185

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214

 Score = 53.6 bits (129), Expect = 3e-09
 Identities = 23/130 (17%), Positives = 48/130 (36%), Gaps = 14/130 (10%)

Query: 30  KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWD 89
           K+ +  ++ +G    GK+ + +R + GQ+  T   ++     S    + ++      + D
Sbjct: 4   KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSIT--DSSAIYKVNNNRGNSLTLID 60

Query: 90  TAGQERY-AALAPLYYRGAAVAVVVYDITSPDSFNK--AQYWVK-----ELQKHGSPDIV 141
             G E     L   +   A   V V D  +     K  A++  +        K+    ++
Sbjct: 61  LPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLI 120

Query: 142 MALVGNKADL 151
                NK D+
Sbjct: 121 AC---NKQDI 127

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181

 Score = 52.6 bits (127), Expect = 5e-09
 Identities = 40/192 (20%), Positives = 74/192 (38%), Gaps = 27/192 (14%)

Query: 11  SSGQSGGLNNLENAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASF 70
           S       + L   GS   +  +V  +++G    GK+ I+ +F   +   TS  T+G   
Sbjct: 4   SHHHHHHSSGLVPRGS---QEHKV--IIVGLDNAGKTTILYQFSMNEVVHTSP-TIG--S 55

Query: 71  LSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVK 130
             + I + +    +F +WD  GQE   +    YY      +VV D T  +  +  +   +
Sbjct: 56  NVEEIVINN---TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTR---E 109

Query: 131 ELQK-------HGSPDIVMALVGNKADLHE---KREVPAQDGIEYAEKNGMFFIETSAKT 180
           EL K         +  ++ A   NK D+ E     E+     +   + +        A T
Sbjct: 110 ELYKMLAHEDLRKAGLLIFA---NKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALT 166

Query: 181 ADNINQLFEVLI 192
            + + Q  E ++
Sbjct: 167 GEGLCQGLEWMM 178

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181

 Score = 51.8 bits (125), Expect = 8e-09
 Identities = 31/174 (17%), Positives = 59/174 (33%), Gaps = 22/174 (12%)

Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           V+++LLG    GK+ ++ +         +  T G  F  +++  Q     K  +WD  GQ
Sbjct: 17  VRILLLGLDNAGKTTLLKQLASEDISHITP-TQG--FNIKSVQSQG---FKLNVWDIGGQ 70

Query: 94  ERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQK-------HGSPDIVMALVG 146
            +       Y+    + + V D      F +     +EL +          P ++ A   
Sbjct: 71  RKIRPYWRSYFENTDILIYVIDSADRKRFEETG---QELTELLEEEKLSCVPVLIFA--- 124

Query: 147 NKADLHE---KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLITCTSS 197
           NK DL       E+     +             SA T + +      +    ++
Sbjct: 125 NKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNA 178

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190

 Score = 51.5 bits (124), Expect = 1e-08
 Identities = 36/197 (18%), Positives = 69/197 (35%), Gaps = 23/197 (11%)

Query: 11  SSGQSGGLNNLENAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKV-TVGAS 69
           S       + L   GS   K + V  + LG    GK+ I+ +         + + T+G  
Sbjct: 4   SHHHHHHSSGLVPRGS---KEVHV--LCLGLDNSGKTTIINKLKPSNAQSQNILPTIG-- 56

Query: 70  FLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWV 129
           F  +         + F ++D +GQ RY  L   YY+     + V D +       A+  +
Sbjct: 57  FSIEKFKSSS---LSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEEL 113

Query: 130 ------KELQKHGSPDIVMALVGNKADLHE---KREVPAQDGIEYAEKNGMFFIETSAKT 180
                  +++    P +  A   NK DL +     +V     +E  +        + A  
Sbjct: 114 DTLLNHPDIKHRRIPILFFA---NKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIK 170

Query: 181 ADNINQLFEVLITCTSS 197
            + + +  + L     +
Sbjct: 171 GEGLQEGVDWLQDQIQT 187

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193

 Score = 50.9 bits (122), Expect = 2e-08
 Identities = 28/162 (17%), Positives = 56/162 (34%), Gaps = 27/162 (16%)

Query: 5   GSVPARSSGQ-SGGLNNLENAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSK 63
           GS+  R   Q    ++     GS    + +  +++ G    GK+ ++         PT  
Sbjct: 19  GSINKRKISQWREWIDEKLGGGSGGGGSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTV- 77

Query: 64  VTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAV--VVYDITSPDS 121
           V+         ++  D       + D  G  +       Y +  A  V  +++ +   DS
Sbjct: 78  VSQE------PLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMV---DS 128

Query: 122 FN-------KAQY-----WVKELQKHGSPDIVMALVGNKADL 151
                     A++      + E       DI++A   NK++L
Sbjct: 129 TVDPKKLTTTAEFLVDILSITESSCENGIDILIA--CNKSEL 168

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198

 Score = 45.7 bits (109), Expect = 2e-06
 Identities = 21/125 (16%), Positives = 42/125 (33%), Gaps = 19/125 (15%)

Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
            KLV LG    GK+ ++      +       T+     S+ + +     + F  +D  G 
Sbjct: 26  GKLVFLGLDNAGKTTLLHMLKDDRLGQHVP-TLH--PTSEELTIA---GMTFTTFDLGGH 79

Query: 94  ERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQK-------HGSPDIVMALVG 146
            +   +   Y       V + D    +   +++   +EL            P +++    
Sbjct: 80  IQARRVWKNYLPAINGIVFLVDCADHERLLESK---EELDSLMTDETIANVPILILG--- 133

Query: 147 NKADL 151
           NK D 
Sbjct: 134 NKIDR 138

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218

 Score = 45.9 bits (109), Expect = 2e-06
 Identities = 23/136 (16%), Positives = 48/136 (35%), Gaps = 26/136 (19%)

Query: 30  KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWD 89
           K+ +  +++ G    GK+ ++         PT  V+         ++  D       + D
Sbjct: 9   KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTV-VSQE------PLSAADYDGSGVTLVD 61

Query: 90  TAGQERYAALAPLYYRGAAVAV--VVYDITSPDSFN-------KAQY-----WVKELQKH 135
             G  +       Y +  A  V  +++ +   DS          A++      + E    
Sbjct: 62  FPGHVKLRYKLSDYLKTRAKFVKGLIFMV---DSTVDPKKLTTTAEFLVDILSITESSCE 118

Query: 136 GSPDIVMALVGNKADL 151
              DI++A   NK++L
Sbjct: 119 NGIDILIA--CNKSEL 132

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190

 Score = 44.5 bits (106), Expect = 4e-06
 Identities = 26/125 (20%), Positives = 46/125 (36%), Gaps = 19/125 (15%)

Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
            KL+ LG    GK+ ++      +       T      S+ +A+     +KF  +D  G 
Sbjct: 24  GKLLFLGLDNAGKTTLLHMLKNDRLATLQP-TWH--PTSEELAIG---NIKFTTFDLGGH 77

Query: 94  ERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQK-------HGSPDIVMALVG 146
            +   L   Y+      V + D   P+ F++A+    EL            P +++    
Sbjct: 78  IQARRLWKDYFPEVNGIVFLVDAADPERFDEAR---VELDALFNIAELKDVPFVILG--- 131

Query: 147 NKADL 151
           NK D 
Sbjct: 132 NKIDA 136

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329

 Score = 44.9 bits (106), Expect = 5e-06
 Identities = 32/148 (21%), Positives = 61/148 (41%), Gaps = 19/148 (12%)

Query: 11  SSGQSGGLNNLENAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASF 70
           S   S   N              ++++++G    GK+ I+ +   G+   T   T+G  F
Sbjct: 143 SLESSPAQNWTPPQPRGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP-TIG--F 199

Query: 71  LSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVK 130
             +T+  ++   + F +WD  GQ++   L   Y++     + V D    +  N+A+   +
Sbjct: 200 NVETVEYKN---ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAR---E 253

Query: 131 ELQK-------HGSPDIVMALVGNKADL 151
           EL +         +  +V A   NK DL
Sbjct: 254 ELMRMLAEDELRDAVLLVFA---NKQDL 278

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 7e-06
 Identities = 20/131 (15%), Positives = 31/131 (23%), Gaps = 40/131 (30%)

Query: 18  LNNLENAGSSDAKNLRV--KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTI 75
              L  A       LR    +++ G  G GK+ + L                        
Sbjct: 137 YLKLRQA----LLELRPAKNVLIDGVLGSGKTWVALD----------------------- 169

Query: 76  ALQDSTTVK---FEI-WDTAGQER-----YAALAPLYYRGAAVAVVVYDITS--PDSFNK 124
                       F+I W               L  L Y+         D +S      + 
Sbjct: 170 VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229

Query: 125 AQYWVKELQKH 135
            Q  ++ L K 
Sbjct: 230 IQAELRRLLKS 240

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 2e-04
 Identities = 24/188 (12%), Positives = 60/188 (31%), Gaps = 28/188 (14%)

Query: 18  LNNLENAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIAL 77
           ++++  +  + +  LR+    L         +V +FV        K      FL   I  
Sbjct: 51  IDHIIMSKDAVSGTLRL-FWTLLSKQ---EEMVQKFVEEVLRINYK------FLMSPIKT 100

Query: 78  QDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGS 137
           +           +     Y       Y    V    Y+++    + K +  + EL+    
Sbjct: 101 EQRQP-------SMMTRMYIEQRDRLYNDNQV-FAKYNVSRLQPYLKLRQALLELRPA-- 150

Query: 138 PDIV---MALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADN--INQLFEVLI 192
            +++   +   G K  +    +V     ++      +F++      +    +  L ++L 
Sbjct: 151 KNVLIDGVLGSG-KTWV--ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207

Query: 193 TCTSSYCS 200
               ++ S
Sbjct: 208 QIDPNWTS 215

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} Length = 423

 Score = 41.9 bits (99), Expect = 5e-05
 Identities = 11/84 (13%), Positives = 27/84 (32%), Gaps = 8/84 (9%)

Query: 109 VAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEK 168
             ++V D             V   ++   P +   +V NK D+  ++    +    Y  +
Sbjct: 116 CGILVTDSAPTPY---EDDVVNLFKEMEIPFV---VVVNKIDVLGEKAEELKG--LYESR 167

Query: 169 NGMFFIETSAKTADNINQLFEVLI 192
                +  SA      + + + + 
Sbjct: 168 YEAKVLLVSALQKKGFDDIGKTIS 191

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* Length = 476

 Score = 41.4 bits (98), Expect = 9e-05
 Identities = 22/125 (17%), Positives = 39/125 (31%), Gaps = 23/125 (18%)

Query: 83  VKFEIWDTAGQ------------ER-YAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWV 129
             F + DTAG              R    +A      A + + + D+ +    ++     
Sbjct: 281 TMFRLTDTAGLREAGEEIEHEGIRRSRMKMA-----EADLILYLLDLGTERLDDELTEI- 334

Query: 130 KELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFE 189
           +EL+    P      V NK D     +   +   +         I  SA   D I+ L +
Sbjct: 335 RELKAA-HPAAKFLTVANKLDRAANADALIRAIADGTGTE---VIGISALNGDGIDTLKQ 390

Query: 190 VLITC 194
            +   
Sbjct: 391 HMGDL 395

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A Length = 172

 Score = 39.8 bits (94), Expect = 1e-04
 Identities = 28/125 (22%), Positives = 47/125 (37%), Gaps = 26/125 (20%)

Query: 83  VKFEIWDTAGQ------------ER-YAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWV 129
           +   I DTAG             ER +  +       A   + + D T+ D+ + A+ W 
Sbjct: 52  MPLHIIDTAGLREASDEVERIGIERAWQEIE-----QADRVLFMVDGTTTDAVDPAEIW- 105

Query: 130 KELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFE 189
            E        + + +V NKAD+  +           +E NG   I  SA+T + ++ L  
Sbjct: 106 PEFIARLPAKLPITVVRNKADITGETLGM-------SEVNGHALIRLSARTGEGVDVLRN 158

Query: 190 VLITC 194
            L   
Sbjct: 159 HLKQS 163

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} Length = 357

 Score = 39.8 bits (93), Expect = 3e-04
 Identities = 32/167 (19%), Positives = 67/167 (40%), Gaps = 25/167 (14%)

Query: 36  LVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIAL--QDSTTVKFEIWDTAG- 92
           +V+ G   VGKS ++      + +  S       F ++ I +   +    +++I DT G 
Sbjct: 170 VVIAGHPNVGKSTLLKALTTAKPEIASY-----PFTTRGINVGQFEDGYFRYQIIDTPGL 224

Query: 93  ----------QERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGS--PDI 140
                      E+ A LA L Y G  +  +  D  S       +  +   ++      D+
Sbjct: 225 LDRPISERNEIEKQAILA-LRYLGNLIIYIF-DP-SEHCGFPLEEQIHLFEEVHGEFKDL 281

Query: 141 VMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQL 187
              +V NK D+ ++  +   +  ++ ++ G+  I+ SA     I+ +
Sbjct: 282 PFLVVINKIDVADEENIKRLE--KFVKEKGLNPIKISALKGTGIDLV 326

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Length = 413

 Score = 39.7 bits (92), Expect = 3e-04
 Identities = 22/191 (11%), Positives = 45/191 (23%), Gaps = 28/191 (14%)

Query: 28  DAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIA-LQDSTTVKFE 86
           +  +  + + + G++G GKS  +        +       G   ++      +        
Sbjct: 64  EIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVV 123

Query: 87  IWDTAGQERYAALAPLYYRGAA---VAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMA 143
            WD  G          Y            +    +    N      K +           
Sbjct: 124 FWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIA-KAISMMKKEFYF-- 180

Query: 144 LVGNKADLHEKREVPA---------------QDGIEYAEKNGM-----FFIETSAKTADN 183
            V  K D     E                   + +    +NG+     F +        +
Sbjct: 181 -VRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYD 239

Query: 184 INQLFEVLITC 194
              L + LI+ 
Sbjct: 240 FPVLMDKLISD 250

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	200
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	100.0
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	100.0
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	100.0
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	100.0
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	100.0
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	100.0
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	100.0
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	100.0
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	100.0
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	100.0
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	100.0
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	100.0
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	100.0
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	100.0
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	100.0
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	100.0
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	100.0
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	100.0
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	100.0
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	100.0
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	100.0
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	100.0
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	100.0
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	100.0
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	100.0
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	100.0
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	100.0
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	100.0
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	100.0
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	100.0
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	100.0
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	100.0
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	100.0
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	100.0
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	100.0
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	100.0
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	100.0
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	100.0
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	100.0
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	100.0
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	100.0
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	100.0
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	100.0
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	100.0
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	100.0
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	100.0
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	100.0
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	100.0
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	100.0
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	100.0
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	100.0
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	100.0
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	100.0
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	100.0
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	100.0
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	100.0
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	100.0
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	100.0
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	100.0
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	100.0
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	100.0
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	100.0
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	100.0
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	100.0
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	100.0
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	100.0
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	100.0
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	100.0
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	100.0
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	100.0
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	100.0
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	100.0
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	100.0
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	100.0
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	100.0
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.98
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.98
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.98
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.98
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.98
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.98
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.97
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.97
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.97
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.97
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.97
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.97
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.97
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.97
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.97
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.97
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.97
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.97
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.97
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.97
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.97
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.96
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.94
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.96
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.96
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.96
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.96
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.96
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.96
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.95
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.95
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.95
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.95
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.95
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.94
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.94
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.94
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.94
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.94
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.94
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.94
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.94
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.94
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.93
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.92
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.92
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.92
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.92
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.92
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.91
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.91
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.91
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.91
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.91
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.91
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.9
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.9
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.9
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.89
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.89
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.88
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.88
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.88
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.88
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.88
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.88
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.88
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.87
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.87
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.87
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.87
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.87
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.87
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.87
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.87
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.86
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.86
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.86
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.86
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.86
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.85
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.85
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.84
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.84
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.84
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.84
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.84
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.84
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.84
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.84
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.83
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.83
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.82
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.82
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.82
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.81
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.81
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.81
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.8
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.79
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.79
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.79
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.78
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.78
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.77
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.77
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.76
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.76
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.75
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.74
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.74
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.73
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.73
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.73
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.72
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.68
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.68
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.67
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.66
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.64
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.63
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.62
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.59
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.59
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.59
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.57
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.56
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.55
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.54
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.48
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.47
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.46
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.46
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	99.37
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.3
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.29
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	99.22
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.03
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	99.02
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	99.0
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.99
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.98
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.96
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.93
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.82
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.79
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.58
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.54
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.51
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	98.36
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	98.32
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.31
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.3
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.28
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.28
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	98.21
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	98.05
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	98.01
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	97.84
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	97.75
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.7
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.57
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.54
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.5
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.44
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.44
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.43
2xxa_A	433	Signal recognition particle protein; protein trans	97.43
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.42
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.42
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.4
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	97.39
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.38
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.37
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	97.36
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.36
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.34
3cwq_A	209	Para family chromosome partitioning protein; alpha	97.33
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	97.32
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.32
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.32
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	97.31
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.29
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.28
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	97.25
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	97.25
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.24
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.23
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.23
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.23
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.22
1sgw_A	214	Putative ABC transporter; structural genomics, P p	97.21
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	97.21
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	97.21
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.2
1b0u_A	262	Histidine permease; ABC transporter, transport pro	97.2
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.19
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	97.19
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.17
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.17
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	97.17
1g6h_A	257	High-affinity branched-chain amino acid transport	97.17
2eyu_A	261	Twitching motility protein PILT; pilus retraction	97.17
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	97.16
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	97.16
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	97.16
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	97.15
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	97.15
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	97.15
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	97.15
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.14
1ji0_A	240	ABC transporter; ATP binding protein, structural g	97.14
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	97.14
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	97.13
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	97.13
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	97.12
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	97.12
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.12
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	97.11
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.11
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.11
2ghi_A	260	Transport protein; multidrug resistance protein, M	97.1
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	97.1
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	97.09
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	97.09
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	97.09
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.08
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	97.08
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	97.08
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	97.06
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	97.06
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	97.05
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.05
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	97.05
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	97.04
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	97.04
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.04
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.04
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	97.03
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	97.03
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	97.02
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.02
4a74_A	231	DNA repair and recombination protein RADA; hydrola	97.02
3end_A	307	Light-independent protochlorophyllide reductase ir	97.02
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	97.01
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	97.01
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	96.99
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	96.99
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	96.98
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	96.98
1via_A	175	Shikimate kinase; structural genomics, transferase	96.97
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	96.97
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	96.96
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	96.96
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	96.96
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.95
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	96.95
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	96.94
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	96.94
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	96.94
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	96.94
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	96.94
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	96.94
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.94
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	96.93
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	96.92
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	96.91
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	96.91
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	96.91
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	96.9
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	96.89
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.89
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	96.88
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	96.88
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	96.88
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	96.87
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	96.87
3co5_A	143	Putative two-component system transcriptional RES	96.86
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.86
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.86
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.84
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.84
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.84
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	96.84
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	96.84
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	96.83
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	96.83
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	96.83
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.82
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.82
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	96.82
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	96.82
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	96.81
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	96.81
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	96.8
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	96.79
2ewv_A	372	Twitching motility protein PILT; pilus retraction	96.79
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	96.78
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	96.77
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	96.76
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	96.76
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	96.76
1p9r_A	418	General secretion pathway protein E; bacterial typ	96.75
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.75
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.75
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	96.74
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	96.74
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	96.73
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.73
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.73
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.72
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.72
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.71
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.71
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	96.7
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.7
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.7
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	96.69
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.68
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.66
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	96.66
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	96.66
3kta_A	182	Chromosome segregation protein SMC; structural mai	96.66
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.64
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	96.64
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.62
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.62
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.62
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.62
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.62
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.57
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	96.57
3bos_A	242	Putative DNA replication factor; P-loop containing	96.57
2og2_A	359	Putative signal recognition particle receptor; nuc	96.56
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	96.54
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	96.52
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	96.5
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.5
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	96.49
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	96.48
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	96.47
2cvh_A	220	DNA repair and recombination protein RADB; filamen	96.47
1tue_A	212	Replication protein E1; helicase, replication, E1E	96.46
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.46
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.46
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.46
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	96.46
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	96.4
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	96.37
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	96.37
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	96.37
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.36
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	96.36
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	96.35
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	96.35
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.32
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.31
3uc9_A	233	Increased recombination centers protein 6; rossman	96.3
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	96.3
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	96.28
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	96.26
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	96.26
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	96.25
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	96.24
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	96.24
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	96.22
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	96.2
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	96.18
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	96.18
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	96.18
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	96.15
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	96.13
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	96.12
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	96.12
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	96.09
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	96.09
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	96.09
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	96.08
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	96.08
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	96.08
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	96.07
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	96.06
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	96.05
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	96.05
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	96.03
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	96.02
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	96.02
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	96.0
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	96.0
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	95.99
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	95.99
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	95.97
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	95.96
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	95.96
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	95.95
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	95.93
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	95.93
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	95.92
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	95.92
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	95.92
2qgz_A	308	Helicase loader, putative primosome component; str	95.89
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	95.87
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	95.87
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	95.87
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	95.85
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	95.83
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	95.81
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	95.78
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	95.78
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	95.77
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	95.77
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	95.77
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	95.76
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	95.75
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	95.72
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	95.72
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	95.72
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	95.71
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	95.7
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	95.7
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	95.69
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	95.69
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	95.67
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	95.67
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	95.67

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=100.00  E-value=3.1e-39  Score=233.86  Aligned_cols=166  Identities=41%  Similarity=0.738  Sum_probs=143.0

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA  110 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  110 (200)
                      .+++||+|+|++|||||||+++|+.+.|...+.++.+.++..+.+.. ++..+.+.+|||+|++++..++..+++.++++
T Consensus        11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~-~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~   89 (216)
T 4dkx_A           11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYL-EDRTIRLQLWDTAGLERFRSLIPSYIRDSAAA   89 (216)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEEC-SSCEEEEEEECCSCTTTCGGGHHHHHTTCSEE
T ss_pred             CCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEe-cceEEEEEEEECCCchhhhhHHHHHhccccEE
Confidence            45689999999999999999999999999989999998887777766 45559999999999999999999999999999


Q ss_pred             EEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Q 028986          111 VVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEV  190 (200)
Q Consensus       111 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~  190 (200)
                      ++|||++++.+|+.+..|+..+......++|+++|+||+|+...++++.+++.++++.++++|+++||++|.||+++|+.
T Consensus        90 ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~  169 (216)
T 4dkx_A           90 VVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRR  169 (216)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHH
T ss_pred             EEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHH
Confidence            99999999999999999999998877788999999999999888899999999999999999999999999999999999


Q ss_pred             HHHhhcc
Q 028986          191 LITCTSS  197 (200)
Q Consensus       191 i~~~~~~  197 (200)
                      |++.+..
T Consensus       170 i~~~i~~  176 (216)
T 4dkx_A          170 VAAALPG  176 (216)
T ss_dssp             HHHHC--
T ss_pred             HHHHHHh
Confidence            9988754

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=100.00  E-value=9.1e-35  Score=206.68  Aligned_cols=169  Identities=38%  Similarity=0.661  Sum_probs=150.1

Q ss_pred             CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCcc
Q 028986           29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAA  108 (200)
Q Consensus        29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d  108 (200)
                      ..+..++|+|+|++|+|||||+++|++..+...+.++.+.++....+.. ++..+.+.+||+||++.+...+..+++.+|
T Consensus        18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   96 (189)
T 2gf9_A           18 GSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYR-HDKRIKLQIWDTAGQERYRTITTAYYRGAM   96 (189)
T ss_dssp             TCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEE-TTEEEEEEEEECCSCCSSCCSGGGGGTTCS
T ss_pred             ccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEE-CCeEEEEEEEeCCCcHHHhhhHHHhccCCC
Confidence            3467899999999999999999999999887777777777776666655 344589999999999999999999999999


Q ss_pred             EEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Q 028986          109 VAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF  188 (200)
Q Consensus       109 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~  188 (200)
                      ++|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..+++.++++.++++++++||+++.|++++|
T Consensus        97 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~  176 (189)
T 2gf9_A           97 GFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVF  176 (189)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHH
Confidence            99999999999999999999999988766789999999999998777777888899999999999999999999999999


Q ss_pred             HHHHHhhccc
Q 028986          189 EVLITCTSSY  198 (200)
Q Consensus       189 ~~i~~~~~~~  198 (200)
                      ++|.+.+.+.
T Consensus       177 ~~l~~~i~~~  186 (189)
T 2gf9_A          177 ERLVDVICEK  186 (189)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999988654

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=100.00  E-value=1.6e-34  Score=206.35  Aligned_cols=170  Identities=42%  Similarity=0.711  Sum_probs=154.2

Q ss_pred             CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCcc
Q 028986           29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAA  108 (200)
Q Consensus        29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d  108 (200)
                      ..+..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.. ++..+.+.+||+||++.+...+..+++.+|
T Consensus        12 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   90 (196)
T 3tkl_A           12 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTITSSYYRGAH   90 (196)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEE-TTEEEEEEEEEECCSGGGCTTHHHHHTTCS
T ss_pred             ccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEE-CCEEEEEEEEECCCcHhhhhhHHHHHhhCC
Confidence            3467899999999999999999999999888888888888877777766 444588999999999999999999999999


Q ss_pred             EEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Q 028986          109 VAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF  188 (200)
Q Consensus       109 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~  188 (200)
                      ++|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..++...++..++++++++||+++.|++++|
T Consensus        91 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~  170 (196)
T 3tkl_A           91 GIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSF  170 (196)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHH
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHH
Confidence            99999999999999999999999988877789999999999998888888889999999999999999999999999999


Q ss_pred             HHHHHhhcccC
Q 028986          189 EVLITCTSSYC  199 (200)
Q Consensus       189 ~~i~~~~~~~~  199 (200)
                      ++|.+.+.++.
T Consensus       171 ~~l~~~i~~~~  181 (196)
T 3tkl_A          171 MTMAAEIKKRM  181 (196)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHHh
Confidence            99999987654

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=100.00  E-value=1.2e-34  Score=206.48  Aligned_cols=170  Identities=38%  Similarity=0.746  Sum_probs=147.3

Q ss_pred             CCCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCc
Q 028986           28 DAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGA  107 (200)
Q Consensus        28 ~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~  107 (200)
                      ......+||+|+|++|+|||||+++|++..+...+.++.+.++....+.+ ++..+.+.+||+||++.+...+..+++.+
T Consensus        16 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   94 (191)
T 2a5j_A           16 PRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNI-DGKQIKLQIWDTAGQESFRSITRSYYRGA   94 (191)
T ss_dssp             CTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEE-TTEEEEEEEECCTTGGGTSCCCHHHHTTC
T ss_pred             cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEE-CCEEEEEEEEECCCchhhhhhHHHHhccC
Confidence            34467899999999999999999999999887777777777776666666 44558999999999999999999999999


Q ss_pred             cEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHH
Q 028986          108 AVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQL  187 (200)
Q Consensus       108 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~  187 (200)
                      |++|+|+|++++.+++.+..|+..+......+.|+++|+||+|+...+.+..+++.+++..++++++++||+++.|++++
T Consensus        95 d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  174 (191)
T 2a5j_A           95 AGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEA  174 (191)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence            99999999999999999999999998876778999999999999777778888899999999999999999999999999


Q ss_pred             HHHHHHhhccc
Q 028986          188 FEVLITCTSSY  198 (200)
Q Consensus       188 ~~~i~~~~~~~  198 (200)
                      |++|.+.+.++
T Consensus       175 ~~~l~~~i~~~  185 (191)
T 2a5j_A          175 FINTAKEIYRK  185 (191)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999887653

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=100.00  E-value=4.9e-35  Score=210.16  Aligned_cols=170  Identities=39%  Similarity=0.652  Sum_probs=142.8

Q ss_pred             CCCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCc
Q 028986           28 DAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGA  107 (200)
Q Consensus        28 ~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~  107 (200)
                      +..+..++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+. +..+.+.+||+||++++...+..+++.+
T Consensus        24 ~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~~  102 (201)
T 2hup_A           24 EQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQ-GKRVKLQIWDTAGQERFRTITQSYYRSA  102 (201)
T ss_dssp             --CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEET-TEEEEEEEECCTTCGGGHHHHHHHHTTC
T ss_pred             cccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEEC-CEEEEEEEEECCCcHhHHHHHHHHHhhC
Confidence            345778999999999999999999999988877777777777766666663 4458999999999999999999999999


Q ss_pred             cEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCC-eEEEecCCCCCCHHH
Q 028986          108 AVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGM-FFIETSAKTADNINQ  186 (200)
Q Consensus       108 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~i~~  186 (200)
                      |++|+|||++++.+++.+..|+..+......++|+++|+||+|+...+.+..+++.+++..+++ +++++||+++.|+++
T Consensus       103 d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~  182 (201)
T 2hup_A          103 NGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEE  182 (201)
T ss_dssp             SEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHH
Confidence            9999999999999999999999999887667899999999999987677888899999999999 999999999999999


Q ss_pred             HHHHHHHhhccc
Q 028986          187 LFEVLITCTSSY  198 (200)
Q Consensus       187 ~~~~i~~~~~~~  198 (200)
                      +|++|.+.+.+.
T Consensus       183 l~~~l~~~i~~~  194 (201)
T 2hup_A          183 AFLRVATELIMR  194 (201)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999988654

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=100.00  E-value=3.1e-34  Score=202.28  Aligned_cols=168  Identities=55%  Similarity=0.934  Sum_probs=149.5

Q ss_pred             CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccE
Q 028986           30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAV  109 (200)
Q Consensus        30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~  109 (200)
                      ....++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+. +..+.+.+||+||++.+...+..+++.+|+
T Consensus         9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   87 (181)
T 2efe_B            9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVN-DATVKFEIWDTAGQERYHSLAPMYYRGAAA   87 (181)
T ss_dssp             -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEET-TEEEEEEEEECCCSGGGGGGTHHHHTTCSE
T ss_pred             CccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEEC-CEEEEEEEEeCCCChhhhhhhHHHhccCCE
Confidence            4677999999999999999999999998877777777777776666664 445899999999999999999999999999


Q ss_pred             EEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Q 028986          110 AVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFE  189 (200)
Q Consensus       110 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~  189 (200)
                      +|+|+|++++.+++.+..|+..+......++|+++|+||+|+...+++..+++.+++..++++++++||+++.|++++|+
T Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~  167 (181)
T 2efe_B           88 AIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFY  167 (181)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence            99999999999999999999999887777899999999999987777888899999999999999999999999999999


Q ss_pred             HHHHhhccc
Q 028986          190 VLITCTSSY  198 (200)
Q Consensus       190 ~i~~~~~~~  198 (200)
                      +|.+.+.+.
T Consensus       168 ~l~~~~~~~  176 (181)
T 2efe_B          168 EIARRLPRV  176 (181)
T ss_dssp             HHHHTCC--
T ss_pred             HHHHHHHhc
Confidence            999988654

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=100.00  E-value=1.3e-34  Score=202.18  Aligned_cols=167  Identities=43%  Similarity=0.706  Sum_probs=142.7

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA  110 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  110 (200)
                      .+.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+ ++..+.+.+||+||++.+...+..+++.+|++
T Consensus         4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~   82 (170)
T 1z08_A            4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNI-GGKRVNLAIWDTAGQERFHALGPIYYRDSNGA   82 (170)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEES-SSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEE-CCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence            56799999999999999999999998887777777777776666665 45558999999999999999999999999999


Q ss_pred             EEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Q 028986          111 VVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEV  190 (200)
Q Consensus       111 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~  190 (200)
                      ++|+|++++.+++.+..|+..+......++|+++|+||+|+...+.+..+++.+++..++++++++||+++.|++++|++
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  162 (170)
T 1z08_A           83 ILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLD  162 (170)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Confidence            99999999999999999999887765668999999999999877778888899999999999999999999999999999


Q ss_pred             HHHhhccc
Q 028986          191 LITCTSSY  198 (200)
Q Consensus       191 i~~~~~~~  198 (200)
                      |.+.+.++
T Consensus       163 l~~~~~~~  170 (170)
T 1z08_A          163 LCKRMIET  170 (170)
T ss_dssp             HHHHHHCC
T ss_pred             HHHHHhhC
Confidence            99988653

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=100.00  E-value=1.6e-34  Score=203.26  Aligned_cols=168  Identities=38%  Similarity=0.699  Sum_probs=149.5

Q ss_pred             CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCcc
Q 028986           29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAA  108 (200)
Q Consensus        29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d  108 (200)
                      ...+.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.. ++..+.+.+||+||++.+...+..+++.+|
T Consensus        11 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   89 (179)
T 1z0f_A           11 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEV-SGQKIKLQIWDTAGQERFRAVTRSYYRGAA   89 (179)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEE-TTEEEEEEEEECTTGGGTCHHHHHHHHTCS
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEE-CCeEEEEEEEECCCChHhhhhHHHHhccCC
Confidence            3467899999999999999999999999887777777777776666666 444588999999999999999999999999


Q ss_pred             EEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Q 028986          109 VAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF  188 (200)
Q Consensus       109 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~  188 (200)
                      ++++|+|++++.+++.+..|+..+......+.|+++|+||+|+...+.+..+++.+++..++++++++||+++.|++++|
T Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  169 (179)
T 1z0f_A           90 GALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAF  169 (179)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred             EEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            99999999999999999999999988777789999999999997777778888999999999999999999999999999


Q ss_pred             HHHHHhhcc
Q 028986          189 EVLITCTSS  197 (200)
Q Consensus       189 ~~i~~~~~~  197 (200)
                      ++|.+.+.+
T Consensus       170 ~~l~~~i~~  178 (179)
T 1z0f_A          170 LEAAKKIYQ  178 (179)
T ss_dssp             HHHHHHHC-
T ss_pred             HHHHHHHhh
Confidence            999998765

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=100.00  E-value=7.9e-35  Score=205.82  Aligned_cols=168  Identities=40%  Similarity=0.720  Sum_probs=121.6

Q ss_pred             CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccE
Q 028986           30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAV  109 (200)
Q Consensus        30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~  109 (200)
                      .++.++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+ ++..+.+.+||+||++.+...+..+++.+|+
T Consensus         5 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   83 (183)
T 2fu5_C            5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRTITTAYYRGAMG   83 (183)
T ss_dssp             CSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEE-TTEEEEEEEEEC---------CCTTTTTCSE
T ss_pred             cCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEE-CCEEEEEEEEcCCCChhhhhhHHHHHhcCCE
Confidence            356899999999999999999999998877677777777776666666 4455899999999999999999999999999


Q ss_pred             EEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Q 028986          110 AVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFE  189 (200)
Q Consensus       110 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~  189 (200)
                      +|+|||++++.+++.+..|+..+......++|+++|+||+|+...+.+..+++.+++..++++++++||+++.|++++|+
T Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  163 (183)
T 2fu5_C           84 IMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFF  163 (183)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence            99999999999999999999999887667899999999999987777888899999999999999999999999999999


Q ss_pred             HHHHhhccc
Q 028986          190 VLITCTSSY  198 (200)
Q Consensus       190 ~i~~~~~~~  198 (200)
                      +|.+.+.+.
T Consensus       164 ~l~~~i~~~  172 (183)
T 2fu5_C          164 TLARDIKAK  172 (183)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999887653

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.5e-34  Score=207.54  Aligned_cols=168  Identities=41%  Similarity=0.763  Sum_probs=150.8

Q ss_pred             CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCcc
Q 028986           29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAA  108 (200)
Q Consensus        29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d  108 (200)
                      ..+..+||+|+|++|||||||+++|++..+...+.++.+.++....+.+ ++..+.+.+||+||++.+...+..+++.+|
T Consensus        22 ~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d  100 (201)
T 2ew1_A           22 DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEI-NGEKVKLQIWDTAGQERFRSITQSYYRSAN  100 (201)
T ss_dssp             CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGGHHHHGGGSTTCS
T ss_pred             ccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEECCCcHHHHHHHHHHHhcCC
Confidence            4567899999999999999999999999888777788888877777666 445589999999999999999999999999


Q ss_pred             EEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Q 028986          109 VAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF  188 (200)
Q Consensus       109 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~  188 (200)
                      ++|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+++..+++..++...+++++++||++|.|++++|
T Consensus       101 ~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~  180 (201)
T 2ew1_A          101 ALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLF  180 (201)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            99999999999999999999999988777789999999999998777788888899999999999999999999999999


Q ss_pred             HHHHHhhcc
Q 028986          189 EVLITCTSS  197 (200)
Q Consensus       189 ~~i~~~~~~  197 (200)
                      ++|.+.+.+
T Consensus       181 ~~l~~~i~~  189 (201)
T 2ew1_A          181 LDLACRLIS  189 (201)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988754

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=100.00  E-value=2.4e-34  Score=200.66  Aligned_cols=166  Identities=58%  Similarity=0.930  Sum_probs=148.4

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA  110 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  110 (200)
                      .+.++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+. +..+.+.+||+||++.+...+..+++.+|++
T Consensus         4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~   82 (170)
T 1r2q_A            4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLD-DTTVKFEIWDTAGQERYHSLAPMYYRGAQAA   82 (170)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEET-TEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEEC-CEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence            467899999999999999999999988877777777777766666664 4458999999999999999999999999999


Q ss_pred             EEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Q 028986          111 VVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEV  190 (200)
Q Consensus       111 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~  190 (200)
                      ++|+|++++.+++.+..|+..+......++|+++|+||+|+...+....+++.+++...+++++++||+++.|++++|++
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~  162 (170)
T 1r2q_A           83 IVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMA  162 (170)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999988876778999999999999776677788889999999999999999999999999999


Q ss_pred             HHHhhcc
Q 028986          191 LITCTSS  197 (200)
Q Consensus       191 i~~~~~~  197 (200)
                      |.+.+.+
T Consensus       163 i~~~~~~  169 (170)
T 1r2q_A          163 IAKKLPK  169 (170)
T ss_dssp             HHHTSCC
T ss_pred             HHHHHhh
Confidence            9998764

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.1e-34  Score=208.21  Aligned_cols=170  Identities=38%  Similarity=0.685  Sum_probs=139.9

Q ss_pred             CCCCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccC
Q 028986           27 SDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRG  106 (200)
Q Consensus        27 ~~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~  106 (200)
                      .+..++.+||+|+|++|||||||+++|++..+...+.++.+.++....+.+ ++..+.+.+||+||++.+...+..+++.
T Consensus        19 ~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~~~~~~~~~~~   97 (200)
T 2o52_A           19 SIWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNV-GGKTVKLQIWDTAGQERFRSVTRSYYRG   97 (200)
T ss_dssp             ---CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEE-TTEEEEEEEECCTTHHHHSCCCHHHHTT
T ss_pred             ccccCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEE-CCeeeEEEEEcCCCcHhHHHHHHHHhcc
Confidence            334577899999999999999999999998887777777777776666666 4445899999999999999999999999


Q ss_pred             ccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHH
Q 028986          107 AAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQ  186 (200)
Q Consensus       107 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~  186 (200)
                      +|++|+|||++++.+++.+..|+..+......++|+++|+||+|+...+.+..+++.+++...+++++++||+++.|+++
T Consensus        98 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~  177 (200)
T 2o52_A           98 AAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEE  177 (200)
T ss_dssp             CSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHH
T ss_pred             CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence            99999999999999999999999998887677899999999999977677788888999999999999999999999999


Q ss_pred             HHHHHHHhhcc
Q 028986          187 LFEVLITCTSS  197 (200)
Q Consensus       187 ~~~~i~~~~~~  197 (200)
                      +|++|.+.+.+
T Consensus       178 l~~~l~~~i~~  188 (200)
T 2o52_A          178 AFLKCARTILN  188 (200)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988764

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.5e-34  Score=206.12  Aligned_cols=171  Identities=42%  Similarity=0.747  Sum_probs=150.7

Q ss_pred             CCCCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccC
Q 028986           27 SDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRG  106 (200)
Q Consensus        27 ~~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~  106 (200)
                      .+..+..++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+. +..+.+.+||+||++.+...+..+++.
T Consensus        19 ~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~   97 (193)
T 2oil_A           19 SEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLG-TAAVKAQIWDTAGLERYRAITSAYYRG   97 (193)
T ss_dssp             -CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEET-TEEEEEEEEEESCCCTTCTTHHHHHTT
T ss_pred             ccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEEC-CEEEEEEEEeCCCchhhhhhhHHHhcc
Confidence            3445778999999999999999999999998877777777777766666663 445899999999999999999999999


Q ss_pred             ccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHH
Q 028986          107 AAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQ  186 (200)
Q Consensus       107 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~  186 (200)
                      +|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..+++..++...+++++++||+++.|+++
T Consensus        98 ~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  177 (193)
T 2oil_A           98 AVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVEL  177 (193)
T ss_dssp             CCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHH
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence            99999999999999999999999998877667899999999999987677788889999999999999999999999999


Q ss_pred             HHHHHHHhhccc
Q 028986          187 LFEVLITCTSSY  198 (200)
Q Consensus       187 ~~~~i~~~~~~~  198 (200)
                      +|++|.+.+.+.
T Consensus       178 l~~~l~~~i~~~  189 (193)
T 2oil_A          178 AFETVLKEIFAK  189 (193)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999887653

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=100.00  E-value=5.2e-34  Score=199.00  Aligned_cols=166  Identities=51%  Similarity=0.845  Sum_probs=149.4

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA  110 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  110 (200)
                      .+.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+. +....+.+||+||.+.+...+..+++.+|++
T Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~   82 (170)
T 1z0j_A            4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQ-NELHKFLIWDTAGLERFRALAPMYYRGSAAA   82 (170)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEET-TEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEEC-CeEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence            467999999999999999999999998877777888877766666664 4448899999999999999999999999999


Q ss_pred             EEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Q 028986          111 VVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEV  190 (200)
Q Consensus       111 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~  190 (200)
                      ++|+|++++.+++.+..|+..+........|+++|+||+|+...+++..++...++..++++++++||+++.|++++|++
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  162 (170)
T 1z0j_A           83 IIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIE  162 (170)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHH
Confidence            99999999999999999999998877788999999999999877778888899999999999999999999999999999


Q ss_pred             HHHhhcc
Q 028986          191 LITCTSS  197 (200)
Q Consensus       191 i~~~~~~  197 (200)
                      |.+.+.+
T Consensus       163 i~~~i~~  169 (170)
T 1z0j_A          163 ISRRIPS  169 (170)
T ss_dssp             HHHHCCC
T ss_pred             HHHHHhc
Confidence            9988754

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2.4e-34  Score=205.06  Aligned_cols=169  Identities=52%  Similarity=0.828  Sum_probs=149.2

Q ss_pred             CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCcc
Q 028986           29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAA  108 (200)
Q Consensus        29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d  108 (200)
                      ..++.+||+|+|++|+|||||+++|++..+...+.++.+.++....+... +..+.+.+||+||++.+...+..+++.+|
T Consensus        19 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   97 (192)
T 2fg5_A           19 SAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCG-NELHKFLIWDTAGQERFHSLAPMYYRGSA   97 (192)
T ss_dssp             --CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECS-SSEEEEEEEEECCSGGGGGGTHHHHTTCS
T ss_pred             ccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeC-CEEEEEEEEcCCCchhhHhhhHHhhccCC
Confidence            34678999999999999999999999998877777788887766666664 44589999999999999999999999999


Q ss_pred             EEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Q 028986          109 VAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF  188 (200)
Q Consensus       109 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~  188 (200)
                      ++|+|||++++.+++.+..|+..+......++|+++|+||+|+...+.+..+++.++++.++++++++||+++.|++++|
T Consensus        98 ~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  177 (192)
T 2fg5_A           98 AAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELF  177 (192)
T ss_dssp             EEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHH
T ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHH
Confidence            99999999999999999999999988777789999999999997767778889999999999999999999999999999


Q ss_pred             HHHHHhhccc
Q 028986          189 EVLITCTSSY  198 (200)
Q Consensus       189 ~~i~~~~~~~  198 (200)
                      ++|.+.+.+.
T Consensus       178 ~~l~~~i~~~  187 (192)
T 2fg5_A          178 QGISRQIPPL  187 (192)
T ss_dssp             HHHHHTCC--
T ss_pred             HHHHHHHHhh
Confidence            9999988654

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=100.00  E-value=8.9e-34  Score=204.15  Aligned_cols=168  Identities=39%  Similarity=0.700  Sum_probs=151.3

Q ss_pred             CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccE
Q 028986           30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAV  109 (200)
Q Consensus        30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~  109 (200)
                      .+..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+ ++..+.+.+||+||++.+...+..+++.+|+
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   83 (206)
T 2bcg_Y            5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVEL-DGKTVKLQIWDTAGQERFRTITSSYYRGSHG   83 (206)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEE-TTEEEEEEEECCTTTTTTTCCCGGGGTTCSE
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEE-CCEEEEEEEEeCCChHHHHHHHHHhccCCCE
Confidence            467899999999999999999999999888777788888777666666 4455899999999999999999999999999


Q ss_pred             EEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Q 028986          110 AVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFE  189 (200)
Q Consensus       110 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~  189 (200)
                      +|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..+++..++..++++++++||+++.|++++|+
T Consensus        84 vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~  163 (206)
T 2bcg_Y           84 IIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFL  163 (206)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence            99999999999999999999999887677899999999999988777888888999999999999999999999999999


Q ss_pred             HHHHhhccc
Q 028986          190 VLITCTSSY  198 (200)
Q Consensus       190 ~i~~~~~~~  198 (200)
                      +|.+.+.+.
T Consensus       164 ~l~~~i~~~  172 (206)
T 2bcg_Y          164 TMARQIKES  172 (206)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999987654

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2.7e-35  Score=209.79  Aligned_cols=170  Identities=38%  Similarity=0.639  Sum_probs=153.2

Q ss_pred             CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCcc
Q 028986           29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAA  108 (200)
Q Consensus        29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d  108 (200)
                      ..+..+||+|+|++|||||||+++|++..+...+.++.+.++....+...... +.+.+||+||++.+...+..+++.+|
T Consensus        19 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~d   97 (191)
T 3dz8_A           19 NFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKR-VKLQIWDTAGQERYRTITTAYYRGAM   97 (191)
T ss_dssp             EEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTT-EEEEEECHHHHHHCHHHHHHHHTTCC
T ss_pred             ccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEE-EEEEEEeCCChHHHHHHHHHHHccCC
Confidence            34678999999999999999999999988877777778777777777664444 88999999999999999999999999


Q ss_pred             EEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Q 028986          109 VAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF  188 (200)
Q Consensus       109 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~  188 (200)
                      ++++|||++++.+++.+..|+..+......++|+++|+||+|+...+....++...++..++++++++||+++.|++++|
T Consensus        98 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  177 (191)
T 3dz8_A           98 GFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAF  177 (191)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHH
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHH
Confidence            99999999999999999999999988777789999999999998777888899999999999999999999999999999


Q ss_pred             HHHHHhhcccC
Q 028986          189 EVLITCTSSYC  199 (200)
Q Consensus       189 ~~i~~~~~~~~  199 (200)
                      ++|++.+.+..
T Consensus       178 ~~l~~~i~~~~  188 (191)
T 3dz8_A          178 ERLVDAICDKM  188 (191)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHhc
Confidence            99999887654

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=9.6e-34  Score=199.58  Aligned_cols=169  Identities=37%  Similarity=0.662  Sum_probs=140.9

Q ss_pred             CCCceeeEEEEcCCCCcHHHHHHHHHcCCCC-CCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCc
Q 028986           29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFD-PTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGA  107 (200)
Q Consensus        29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~  107 (200)
                      ..+..++|+|+|++|+|||||+++|.+..+. ..+.++.+.++....+.. ++..+.+.+||+||++.+...+..+++.+
T Consensus         6 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~   84 (180)
T 2g6b_A            6 FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDV-DGVKVKLQMWDTAGQERFRSVTHAYYRDA   84 (180)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEE-TTEEEEEEEEECCCC--------CCGGGC
T ss_pred             cCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEE-CCEEEEEEEEeCCCcHHHHHHHHHHccCC
Confidence            3467899999999999999999999998874 345666777766555555 45558999999999999999999999999


Q ss_pred             cEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHH
Q 028986          108 AVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQL  187 (200)
Q Consensus       108 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~  187 (200)
                      |++++|+|++++.+++.+..|+..+......+.|+++|+||+|+...+.+..++..+++..++++++++||+++.|++++
T Consensus        85 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  164 (180)
T 2g6b_A           85 HALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLA  164 (180)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence            99999999999999999999999988876678999999999999887778888889999999999999999999999999


Q ss_pred             HHHHHHhhccc
Q 028986          188 FEVLITCTSSY  198 (200)
Q Consensus       188 ~~~i~~~~~~~  198 (200)
                      |++|.+.+.++
T Consensus       165 ~~~l~~~~~~~  175 (180)
T 2g6b_A          165 FTAIAKELKRR  175 (180)
T ss_dssp             HHHHHHHHHC-
T ss_pred             HHHHHHHHHHH
Confidence            99999988764

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=100.00  E-value=4.5e-34  Score=201.93  Aligned_cols=169  Identities=30%  Similarity=0.461  Sum_probs=147.8

Q ss_pred             CCCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCc
Q 028986           28 DAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGA  107 (200)
Q Consensus        28 ~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~  107 (200)
                      ....+.+||+|+|++|+|||||+++|.+..+...+.++.+..+ ...... ++..+.+.+||+||++.+...+..+++.+
T Consensus        13 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~   90 (183)
T 3kkq_A           13 SENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEI-DNQWAILDVLDTAGQEEFSAMREQYMRTG   90 (183)
T ss_dssp             -CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEE-TTEEEEEEEEECCSCGGGCSSHHHHHHHC
T ss_pred             ccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEe-CCcEEEEEEEECCCchhhHHHHHHHHhcC
Confidence            3456789999999999999999999999888777777777666 444444 45557899999999999999999999999


Q ss_pred             cEEEEEEeCCCHHhHHHHHHHHHHHHH-cCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCC-CCCCHH
Q 028986          108 AVAVVVYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAK-TADNIN  185 (200)
Q Consensus       108 d~~i~v~d~~~~~s~~~~~~~~~~i~~-~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~-~~~~i~  185 (200)
                      |++++|||++++.+++.+..|+..+.. ....++|+++|+||+|+...+.+..+++.+++..++++++++||+ ++.|++
T Consensus        91 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~  170 (183)
T 3kkq_A           91 DGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVD  170 (183)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHH
Confidence            999999999999999999999988865 345688999999999998888889999999999999999999999 999999


Q ss_pred             HHHHHHHHhhccc
Q 028986          186 QLFEVLITCTSSY  198 (200)
Q Consensus       186 ~~~~~i~~~~~~~  198 (200)
                      ++|++|.+.+.++
T Consensus       171 ~l~~~l~~~i~~q  183 (183)
T 3kkq_A          171 KTFHDLVRVIRQQ  183 (183)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhhC
Confidence            9999999988753

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=4.1e-34  Score=199.44  Aligned_cols=165  Identities=53%  Similarity=0.865  Sum_probs=147.1

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEE
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAV  111 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i  111 (200)
                      +.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+ ++..+.+.+||+||++.+...+..+++.+|+++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i   80 (170)
T 1ek0_A            2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTI-NEHTVKFEIWDTAGQERFASLAPXYYRNAQAAL   80 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEE-TTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEECCCChhhhhhhhhhhccCcEEE
Confidence            4689999999999999999999999887777778887776666666 445589999999999999999999999999999


Q ss_pred             EEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCC---CcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Q 028986          112 VVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK---REVPAQDGIEYAEKNGMFFIETSAKTADNINQLF  188 (200)
Q Consensus       112 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~---~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~  188 (200)
                      +|+|++++.+++.+..|+..+......+.|+++|+||+|+...   +++..++..+++..++++++++||+++.|++++|
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  160 (170)
T 1ek0_A           81 VVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVF  160 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHH
T ss_pred             EEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            9999999999999999999988876778999999999999655   6677888889999999999999999999999999


Q ss_pred             HHHHHhhcc
Q 028986          189 EVLITCTSS  197 (200)
Q Consensus       189 ~~i~~~~~~  197 (200)
                      ++|.+.+.+
T Consensus       161 ~~l~~~i~~  169 (170)
T 1ek0_A          161 LGIGEKIPL  169 (170)
T ss_dssp             HHHHTTSCC
T ss_pred             HHHHHHHhh
Confidence            999988764

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=100.00  E-value=4.6e-34  Score=202.28  Aligned_cols=167  Identities=38%  Similarity=0.676  Sum_probs=149.3

Q ss_pred             CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccE
Q 028986           30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAV  109 (200)
Q Consensus        30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~  109 (200)
                      .++.++|+|+|++|||||||+++|++..+...+.++.+.++....+.. ++..+.+.+||+||++.+...+..+++.+|+
T Consensus         7 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   85 (186)
T 2bme_A            7 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINV-GGKYVKLQIWDTAGQERFRSVTRSYYRGAAG   85 (186)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEE-TTEEEEEEEEEECCSGGGHHHHHTTSTTCSE
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEE-CCEEEEEEEEeCCCcHHHHHHHHHHHhcCCE
Confidence            467899999999999999999999999887777777777776666665 4455789999999999999999999999999


Q ss_pred             EEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Q 028986          110 AVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFE  189 (200)
Q Consensus       110 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~  189 (200)
                      +|+|||++++.+++.+..|+..+......++|+++|+||+|+...+.+..+++.+++...+++++++||+++.|++++|+
T Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  165 (186)
T 2bme_A           86 ALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFV  165 (186)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHH
Confidence            99999999999999999999998887677899999999999977677788888999999999999999999999999999


Q ss_pred             HHHHhhcc
Q 028986          190 VLITCTSS  197 (200)
Q Consensus       190 ~i~~~~~~  197 (200)
                      +|.+.+.+
T Consensus       166 ~l~~~~~~  173 (186)
T 2bme_A          166 QCARKILN  173 (186)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988764

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=100.00  E-value=1.1e-34  Score=210.58  Aligned_cols=170  Identities=35%  Similarity=0.616  Sum_probs=146.9

Q ss_pred             CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCC---------cEEEEEEEeCCChhhhhhc
Q 028986           29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDS---------TTVKFEIWDTAGQERYAAL   99 (200)
Q Consensus        29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~D~~g~~~~~~~   99 (200)
                      ..++.+||+|+|++|||||||+++|++..+...+.++.+.++....+.+.+.         ..+.+.+||+||++.+...
T Consensus        21 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~  100 (217)
T 2f7s_A           21 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSL  100 (217)
T ss_dssp             CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHH
T ss_pred             CcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhH
Confidence            4567899999999999999999999998887666677776666666655433         1478999999999999999


Q ss_pred             ccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCC-CCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecC
Q 028986          100 APLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGS-PDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSA  178 (200)
Q Consensus       100 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~  178 (200)
                      +..+++.+|++|+|||++++.+++.+..|+..+..... .++|+++|+||+|+...+.+..+++.+++..++++++++||
T Consensus       101 ~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa  180 (217)
T 2f7s_A          101 TTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSA  180 (217)
T ss_dssp             HHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBT
T ss_pred             HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEEC
Confidence            99999999999999999999999999999887765543 68999999999999877777888999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHhhccc
Q 028986          179 KTADNINQLFEVLITCTSSY  198 (200)
Q Consensus       179 ~~~~~i~~~~~~i~~~~~~~  198 (200)
                      +++.|++++|++|.+.+.++
T Consensus       181 ~~g~gi~~l~~~l~~~i~~~  200 (217)
T 2f7s_A          181 ATGQNVEKAVETLLDLIMKR  200 (217)
T ss_dssp             TTTBTHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999887653

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=100.00  E-value=1e-33  Score=203.41  Aligned_cols=168  Identities=36%  Similarity=0.631  Sum_probs=149.7

Q ss_pred             CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCcc
Q 028986           29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAA  108 (200)
Q Consensus        29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d  108 (200)
                      ..+..+||+|+|++|||||||+++|++..+...+.++.+.++....+.. ++..+.+.+||+||++.+...+..+++.+|
T Consensus         4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   82 (203)
T 1zbd_A            4 MFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYR-NDKRIKLQIWDTAGLERYRTITTAYYRGAM   82 (203)
T ss_dssp             SCSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGGHHHHHTTGGGCS
T ss_pred             ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEE-CCeEEEEEEEECCCchhhcchHHHhhcCCC
Confidence            3457899999999999999999999999887777777777776666655 444589999999999999999999999999


Q ss_pred             EEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Q 028986          109 VAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF  188 (200)
Q Consensus       109 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~  188 (200)
                      ++|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..+++.+++..++++++++||+++.|++++|
T Consensus        83 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  162 (203)
T 1zbd_A           83 GFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTF  162 (203)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHH
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHH
Confidence            99999999999999999999999988766789999999999998877788889999999999999999999999999999


Q ss_pred             HHHHHhhcc
Q 028986          189 EVLITCTSS  197 (200)
Q Consensus       189 ~~i~~~~~~  197 (200)
                      ++|.+.+.+
T Consensus       163 ~~l~~~i~~  171 (203)
T 1zbd_A          163 ERLVDVICE  171 (203)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988754

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=100.00  E-value=6.7e-34  Score=198.45  Aligned_cols=165  Identities=42%  Similarity=0.763  Sum_probs=141.1

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEE
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAV  111 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i  111 (200)
                      ..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.. ++..+.+.+||+||++.+...+..+++.+|+++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   80 (170)
T 1g16_A            2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDI-NGKKVKLQIWDTAGQERFRTITTAYYRGAMGII   80 (170)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEES-SSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEE
T ss_pred             CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEeCCCChhhhhhHHHHhccCCEEE
Confidence            4689999999999999999999999887777777777776666665 445589999999999999999999999999999


Q ss_pred             EEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Q 028986          112 VVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVL  191 (200)
Q Consensus       112 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i  191 (200)
                      +|+|++++.+++.+..|+..+......+.|+++|+||+|+ ..+....++..++++.++++++++||+++.|++++|++|
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l  159 (170)
T 1g16_A           81 LVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL  159 (170)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC-TTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccC-CcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence            9999999999999999999998877778999999999999 445567788889999999999999999999999999999


Q ss_pred             HHhhccc
Q 028986          192 ITCTSSY  198 (200)
Q Consensus       192 ~~~~~~~  198 (200)
                      .+.+.++
T Consensus       160 ~~~~~~~  166 (170)
T 1g16_A          160 AKLIQEK  166 (170)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHH
Confidence            9988764

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=100.00  E-value=8.8e-34  Score=199.77  Aligned_cols=168  Identities=37%  Similarity=0.670  Sum_probs=147.4

Q ss_pred             CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCcc
Q 028986           29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAA  108 (200)
Q Consensus        29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d  108 (200)
                      .....++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.. ++..+.+.+||+||++.+...+..+++.+|
T Consensus         5 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   83 (181)
T 3tw8_B            5 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEI-NGEKVKLQIWDTAGQERFRTITSTYYRGTH   83 (181)
T ss_dssp             -CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEE-TTEEEEEEEEEETTGGGCSSCCGGGGTTCS
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEE-CCEEEEEEEEcCCCchhhhhhHHHHhccCC
Confidence            3467899999999999999999999998887777778887777777666 445588999999999999999999999999


Q ss_pred             EEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Q 028986          109 VAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF  188 (200)
Q Consensus       109 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~  188 (200)
                      ++++|+|++++.+++.+..|+..+... ..+.|+++|+||+|+...+.+..++...++...+++++++||+++.|++++|
T Consensus        84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  162 (181)
T 3tw8_B           84 GVIVVYDVTSAESFVNVKRWLHEINQN-CDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMF  162 (181)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHH-CTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHh-CCCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHH
Confidence            999999999999999999999998776 4589999999999998877788888999999999999999999999999999


Q ss_pred             HHHHHhhccc
Q 028986          189 EVLITCTSSY  198 (200)
Q Consensus       189 ~~i~~~~~~~  198 (200)
                      ++|.+.+.+.
T Consensus       163 ~~l~~~~~~~  172 (181)
T 3tw8_B          163 NCITELVLRA  172 (181)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999987653

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=100.00  E-value=2.3e-34  Score=205.17  Aligned_cols=171  Identities=35%  Similarity=0.644  Sum_probs=143.8

Q ss_pred             CCCCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccC
Q 028986           27 SDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRG  106 (200)
Q Consensus        27 ~~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~  106 (200)
                      ..+....++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+ ++..+.+.+||+||++.+...+..+++.
T Consensus        20 p~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~~~~~~~~~~~   98 (192)
T 2il1_A           20 PRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVEL-RGKKIRLQIWDTAGQERFNSITSAYYRS   98 (192)
T ss_dssp             --CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEE-TTEEEEEEEEEECCSGGGHHHHHHHHHH
T ss_pred             CcccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEE-CCeEEEEEEEeCCCcHHHHHHHHHHhcC
Confidence            344577899999999999999999999998887777777777777776666 4445889999999999999999999999


Q ss_pred             ccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHc-CCeEEEecCCCCCCHH
Q 028986          107 AAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKN-GMFFIETSAKTADNIN  185 (200)
Q Consensus       107 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~S~~~~~~i~  185 (200)
                      +|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+++..+++.+++... +++++++||+++.|++
T Consensus        99 ~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~  178 (192)
T 2il1_A           99 AKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVD  178 (192)
T ss_dssp             CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHH
T ss_pred             CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHH
Confidence            999999999999999999999999998877778999999999999877777888888888874 8899999999999999


Q ss_pred             HHHHHHHHhhccc
Q 028986          186 QLFEVLITCTSSY  198 (200)
Q Consensus       186 ~~~~~i~~~~~~~  198 (200)
                      ++|++|.+.+.++
T Consensus       179 ~l~~~l~~~i~~~  191 (192)
T 2il1_A          179 EIFLKLVDDILKK  191 (192)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999988654

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=100.00  E-value=1.8e-33  Score=200.25  Aligned_cols=171  Identities=32%  Similarity=0.597  Sum_probs=148.6

Q ss_pred             CCCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEE-EEEEEecCC--------cEEEEEEEeCCChhhhhh
Q 028986           28 DAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFL-SQTIALQDS--------TTVKFEIWDTAGQERYAA   98 (200)
Q Consensus        28 ~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~--------~~~~~~l~D~~g~~~~~~   98 (200)
                      ...+..++|+|+|++|+|||||+++|.+..+...+.++.+.++. ...+...+.        ..+.+.+||+||++.+..
T Consensus         6 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~   85 (195)
T 3bc1_A            6 GDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRS   85 (195)
T ss_dssp             CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHH
T ss_pred             cccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHH
Confidence            34577899999999999999999999998887777777777776 444444332        158999999999999999


Q ss_pred             cccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCC-CCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEec
Q 028986           99 LAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGS-PDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETS  177 (200)
Q Consensus        99 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S  177 (200)
                      .+..+++.+|++|+|+|++++.+++.+..|+..+..... .++|+++|+||+|+...+.+..+++.+++..++++++++|
T Consensus        86 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S  165 (195)
T 3bc1_A           86 LTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETS  165 (195)
T ss_dssp             HHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECC
T ss_pred             HHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEEE
Confidence            999999999999999999999999999999998877654 6899999999999987777788889999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHhhccc
Q 028986          178 AKTADNINQLFEVLITCTSSY  198 (200)
Q Consensus       178 ~~~~~~i~~~~~~i~~~~~~~  198 (200)
                      ++++.|++++|++|.+.+.++
T Consensus       166 a~~~~~v~~l~~~l~~~~~~~  186 (195)
T 3bc1_A          166 AANGTNISHAIEMLLDLIMKR  186 (195)
T ss_dssp             TTTCTTHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999987654

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=100.00  E-value=2.1e-34  Score=202.61  Aligned_cols=168  Identities=30%  Similarity=0.476  Sum_probs=146.3

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA  110 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  110 (200)
                      .+.++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+.++..+.+.+||+||++.+...+..+++.+|++
T Consensus         4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~   83 (178)
T 2hxs_A            4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGV   83 (178)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEE
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEE
Confidence            46799999999999999999999998876666677777777777777665668999999999999999999999999999


Q ss_pred             EEEEeCCCHHhHHHHHHHHHHHHHcC---CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHH
Q 028986          111 VVVYDITSPDSFNKAQYWVKELQKHG---SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQL  187 (200)
Q Consensus       111 i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~  187 (200)
                      ++|||++++.+++.+..|+..+....   ....|+++|+||+|+...+.+..+++..++..++++++++||+++.|++++
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  163 (178)
T 2hxs_A           84 LLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLC  163 (178)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHH
Confidence            99999999999999999998887642   133448999999999776777888889999999999999999999999999


Q ss_pred             HHHHHHhhccc
Q 028986          188 FEVLITCTSSY  198 (200)
Q Consensus       188 ~~~i~~~~~~~  198 (200)
                      |++|.+.+.+.
T Consensus       164 ~~~l~~~~~~~  174 (178)
T 2hxs_A          164 FQKVAAEILGI  174 (178)
T ss_dssp             HHHHHHHHTTC
T ss_pred             HHHHHHHHHhh
Confidence            99999988664

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=100.00  E-value=1.4e-33  Score=198.99  Aligned_cols=166  Identities=30%  Similarity=0.443  Sum_probs=145.5

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA  110 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  110 (200)
                      ...++|+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.. ++..+.+.+||+||++.+...+..+++.+|++
T Consensus         4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~   81 (181)
T 3t5g_A            4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITV-NGQEYHLQLVDTAGQDEYSIFPQTYSIDINGY   81 (181)
T ss_dssp             EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEE-TTEEEEEEEEECCCCCTTCCCCGGGTTTCSEE
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEE-CCEEEEEEEEeCCCchhhhHHHHHHHhcCCEE
Confidence            4688999999999999999999998888777777777766 444444 55568899999999999999999999999999


Q ss_pred             EEEEeCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Q 028986          111 VVVYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFE  189 (200)
Q Consensus       111 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~  189 (200)
                      ++|||++++.+++.+..|+..+.... ..++|+++|+||+|+...+.+..+++.+++..++++++++||+++.|++++|+
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~  161 (181)
T 3t5g_A           82 ILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFR  161 (181)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHH
Confidence            99999999999999999998886543 45799999999999988888899999999999999999999999999999999


Q ss_pred             HHHHhhccc
Q 028986          190 VLITCTSSY  198 (200)
Q Consensus       190 ~i~~~~~~~  198 (200)
                      +|++.+.++
T Consensus       162 ~l~~~~~~~  170 (181)
T 3t5g_A          162 RIILEAEKM  170 (181)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHHHHh
Confidence            999988765

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-33  Score=205.89  Aligned_cols=168  Identities=40%  Similarity=0.760  Sum_probs=142.5

Q ss_pred             CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccE
Q 028986           30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAV  109 (200)
Q Consensus        30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~  109 (200)
                      .+..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+ ++..+.+.+||+||++.+...+..+++.+|+
T Consensus        10 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   88 (223)
T 3cpj_B           10 YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEI-EGKRIKAQIWDTAGQERYRAITSAYYRGAVG   88 (223)
T ss_dssp             CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEE-TTEEEEEEEECCTTTTTTTCCCGGGTTTCCE
T ss_pred             CCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEE-CCEEEEEEEEECCCccchhhhHHHHhccCCE
Confidence            467799999999999999999999999888777778887777666666 4455899999999999999999999999999


Q ss_pred             EEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Q 028986          110 AVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFE  189 (200)
Q Consensus       110 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~  189 (200)
                      +|+|||++++.+++.+..|+..+......++|+++|+||+|+...+++..+++..++..++++++++||+++.|++++|+
T Consensus        89 vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  168 (223)
T 3cpj_B           89 ALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFE  168 (223)
T ss_dssp             EEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHH
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            99999999999999999999999887667899999999999987777788888999999999999999999999999999


Q ss_pred             HHHHhhccc
Q 028986          190 VLITCTSSY  198 (200)
Q Consensus       190 ~i~~~~~~~  198 (200)
                      +|.+.+.+.
T Consensus       169 ~l~~~i~~~  177 (223)
T 3cpj_B          169 ELINTIYQK  177 (223)
T ss_dssp             HHHHHHTTC
T ss_pred             HHHHHHHHH
Confidence            999988764

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=100.00  E-value=3.6e-34  Score=205.23  Aligned_cols=169  Identities=33%  Similarity=0.559  Sum_probs=136.3

Q ss_pred             CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCcc
Q 028986           29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAA  108 (200)
Q Consensus        29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d  108 (200)
                      ..+..++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+ ++..+.+.+||+||++.+...+..+++.+|
T Consensus        24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d  102 (199)
T 2p5s_A           24 SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIV-DGERTVLQLWDTAGQERFRSIAKSYFRKAD  102 (199)
T ss_dssp             ----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEE-TTEEEEEEEEECTTCTTCHHHHHHHHHHCS
T ss_pred             CcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEE-CCEEEEEEEEECCCCcchhhhHHHHHhhCC
Confidence            3456799999999999999999999998887777777777776666666 444588999999999999889999999999


Q ss_pred             EEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCC------CCCcCCHHHHHHHHHHcCCeEEEecCCCCC
Q 028986          109 VAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLH------EKREVPAQDGIEYAEKNGMFFIETSAKTAD  182 (200)
Q Consensus       109 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~------~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~  182 (200)
                      ++|+|||++++.+++.+..|+..+......++|+++|+||+|+.      ..+.+..+++.+++..++++++++||+++.
T Consensus       103 ~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~  182 (199)
T 2p5s_A          103 GVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGS  182 (199)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCT
T ss_pred             EEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCC
Confidence            99999999999999999999999888766789999999999985      446677888899999999999999999999


Q ss_pred             CHHHHHHHHHHhhccc
Q 028986          183 NINQLFEVLITCTSSY  198 (200)
Q Consensus       183 ~i~~~~~~i~~~~~~~  198 (200)
                      |++++|++|++.+.++
T Consensus       183 gv~el~~~l~~~i~~~  198 (199)
T 2p5s_A          183 NIVEAVLHLAREVKKR  198 (199)
T ss_dssp             THHHHHHHHHHHHTC-
T ss_pred             CHHHHHHHHHHHHHhh
Confidence            9999999999998764

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=100.00  E-value=1.3e-33  Score=200.78  Aligned_cols=169  Identities=36%  Similarity=0.672  Sum_probs=143.4

Q ss_pred             CCCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhh-hcccccccC
Q 028986           28 DAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYA-ALAPLYYRG  106 (200)
Q Consensus        28 ~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-~~~~~~~~~  106 (200)
                      ....+.+||+|+|++|||||||+++|++..+...+.++.+.++....+.+ ++..+.+.+||+||++++. ..+..+++.
T Consensus        15 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   93 (189)
T 1z06_A           15 GSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDI-DGERIKIQLWDTAGQERFRKSMVQHYYRN   93 (189)
T ss_dssp             ----CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEE-TTEEEEEEEEECCCSHHHHTTTHHHHHTT
T ss_pred             CCCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEE-CCEEEEEEEEECCCchhhhhhhhHHHhcC
Confidence            34467899999999999999999999998887777777777776666666 4445889999999999888 888889999


Q ss_pred             ccEEEEEEeCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCC---C
Q 028986          107 AAVAVVVYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTA---D  182 (200)
Q Consensus       107 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~---~  182 (200)
                      +|++|+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+...+++..++..+++..++++++++|++++   .
T Consensus        94 ~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~  173 (189)
T 1z06_A           94 VHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDND  173 (189)
T ss_dssp             CCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGS
T ss_pred             CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCccc
Confidence            999999999999999999999999887764 567999999999999777778888899999999999999999999   9


Q ss_pred             CHHHHHHHHHHhhcc
Q 028986          183 NINQLFEVLITCTSS  197 (200)
Q Consensus       183 ~i~~~~~~i~~~~~~  197 (200)
                      +++++|++|++.+.+
T Consensus       174 ~i~~l~~~l~~~i~~  188 (189)
T 1z06_A          174 HVEAIFMTLAHKLKS  188 (189)
T ss_dssp             CHHHHHHHHC-----
T ss_pred             CHHHHHHHHHHHHhh
Confidence            999999999987754

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=100.00  E-value=9.1e-34  Score=197.41  Aligned_cols=165  Identities=32%  Similarity=0.576  Sum_probs=146.5

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA  110 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  110 (200)
                      +..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.. ++..+.+.+||+||++++...+..+++.+|++
T Consensus         3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   81 (168)
T 1z2a_A            3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQV-NDEDVRLMLWDTAGQEEFDAITKAYYRGAQAC   81 (168)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEE-TTEEEEEEEECCTTGGGTTCCCHHHHTTCCEE
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEE-CCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEE
Confidence            46789999999999999999999999887777888777777766666 44458999999999999999999999999999


Q ss_pred             EEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Q 028986          111 VVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEV  190 (200)
Q Consensus       111 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~  190 (200)
                      ++|+|++++.+++.+..|+..+.... .+.|+++|+||+|+...+++..+++.+++..++++++++|++++.|++++|++
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  160 (168)
T 1z2a_A           82 VLVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKY  160 (168)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Confidence            99999999999999999999887664 67899999999999877777788889999999999999999999999999999


Q ss_pred             HHHhhcc
Q 028986          191 LITCTSS  197 (200)
Q Consensus       191 i~~~~~~  197 (200)
                      |.+.+.+
T Consensus       161 l~~~~~~  167 (168)
T 1z2a_A          161 LAEKHLQ  167 (168)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhh
Confidence            9988764

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=100.00  E-value=1.5e-33  Score=198.29  Aligned_cols=167  Identities=42%  Similarity=0.754  Sum_probs=147.8

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA  110 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  110 (200)
                      ...++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+ ++..+.+.+||+||++.+...+..+++.+|++
T Consensus        12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~   90 (179)
T 2y8e_A           12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFRSLIPSYIRDSTVA   90 (179)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGGGGGSHHHHHTCSEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEE-CCeEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence            45699999999999999999999998887777777777776766666 44457899999999999999999999999999


Q ss_pred             EEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Q 028986          111 VVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEV  190 (200)
Q Consensus       111 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~  190 (200)
                      ++|+|++++.+++.+..|+..+......++|+++|+||+|+...+++..++...++...+++++++|++++.|++++|++
T Consensus        91 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  170 (179)
T 2y8e_A           91 VVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRR  170 (179)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999888766678999999999999877777888889999999999999999999999999999


Q ss_pred             HHHhhccc
Q 028986          191 LITCTSSY  198 (200)
Q Consensus       191 i~~~~~~~  198 (200)
                      |.+.+.+.
T Consensus       171 l~~~~~~~  178 (179)
T 2y8e_A          171 VAAALPGM  178 (179)
T ss_dssp             HHHTCC--
T ss_pred             HHHHHhhc
Confidence            99987653

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=100.00  E-value=8.7e-34  Score=202.73  Aligned_cols=171  Identities=27%  Similarity=0.317  Sum_probs=138.6

Q ss_pred             CCCCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhh-ccccccc
Q 028986           27 SDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAA-LAPLYYR  105 (200)
Q Consensus        27 ~~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-~~~~~~~  105 (200)
                      +.+....++|+|+|++|||||||+++|.+........++.+.+.....+.+ ++..+.+.+||++|++.+.. ++..+++
T Consensus        17 ~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~~~~~~~~~~~   95 (195)
T 3cbq_A           17 QGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMV-DKEEVTLVVYDIWEQGDAGGWLRDHCLQ   95 (195)
T ss_dssp             -----CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEE-TTEEEEEEEECCCCCSGGGHHHHHHHHH
T ss_pred             CCCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEE-CCEEEEEEEEecCCCccchhhhHHHhhc
Confidence            344567899999999999999999999764333223334444444555555 45568999999999987654 6777889


Q ss_pred             CccEEEEEEeCCCHHhHHHHHHHHHHHHHcCC-CCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCH
Q 028986          106 GAAVAVVVYDITSPDSFNKAQYWVKELQKHGS-PDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNI  184 (200)
Q Consensus       106 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i  184 (200)
                      .+|++|+|||++++.+++.+..|+..+..... .++|+++|+||+|+...+.+..+++.+++..++++++++||+++.|+
T Consensus        96 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v  175 (195)
T 3cbq_A           96 TGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNT  175 (195)
T ss_dssp             HCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSH
T ss_pred             cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCH
Confidence            99999999999999999999999998877543 57999999999999877778888999999999999999999999999


Q ss_pred             HHHHHHHHHhhccc
Q 028986          185 NQLFEVLITCTSSY  198 (200)
Q Consensus       185 ~~~~~~i~~~~~~~  198 (200)
                      +++|++|++.+.++
T Consensus       176 ~~lf~~l~~~i~~~  189 (195)
T 3cbq_A          176 RELFEGAVRQIRLR  189 (195)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999988664

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=100.00  E-value=3.1e-36  Score=216.01  Aligned_cols=171  Identities=42%  Similarity=0.705  Sum_probs=141.7

Q ss_pred             CCCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCc
Q 028986           28 DAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGA  107 (200)
Q Consensus        28 ~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~  107 (200)
                      ...+..+||+|+|++|||||||+++|++..+...+.++.+.++....+.+ ++..+.+.+||+||++.+...+..+++.+
T Consensus        28 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~  106 (199)
T 3l0i_B           28 PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTITSSYYRGA  106 (199)
T ss_dssp             CCCSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEE-TTEEEEEEEECCTTCTTCCCCSCC--CCC
T ss_pred             cccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEE-CCEEEEEEEEECCCcHhHHHHHHHHhhcC
Confidence            34567899999999999999999999998877776777777777776666 44458899999999999999999999999


Q ss_pred             cEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHH
Q 028986          108 AVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQL  187 (200)
Q Consensus       108 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~  187 (200)
                      |++|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..++...++..++++++++||+++.|++++
T Consensus       107 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l  186 (199)
T 3l0i_B          107 HGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQS  186 (199)
T ss_dssp             SEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHH
Confidence            99999999999999999999999998877778999999999999877777777788899999999999999999999999


Q ss_pred             HHHHHHhhcccC
Q 028986          188 FEVLITCTSSYC  199 (200)
Q Consensus       188 ~~~i~~~~~~~~  199 (200)
                      |++|.+.+.+++
T Consensus       187 ~~~l~~~l~~~~  198 (199)
T 3l0i_B          187 FMTMAAEIKKRM  198 (199)
T ss_dssp             HHHHTTTTTTTC
T ss_pred             HHHHHHHHHHhc
Confidence            999999988764

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=100.00  E-value=1e-33  Score=203.13  Aligned_cols=169  Identities=31%  Similarity=0.446  Sum_probs=142.1

Q ss_pred             CCCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCc
Q 028986           28 DAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGA  107 (200)
Q Consensus        28 ~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~  107 (200)
                      .+....+||+|+|++|||||||+++|.+..+...+.++.+..+ ...+.. ++..+.+.+||+||++.+...+..+++.+
T Consensus        19 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   96 (201)
T 3oes_A           19 MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTL-GKDEFHLHLVDTAGQDEYSILPYSFIIGV   96 (201)
T ss_dssp             ----CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC-----CEEEEEEEECCCCTTCCCCGGGTTTC
T ss_pred             CCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEE-CCEEEEEEEEECCCccchHHHHHHHHhcC
Confidence            3446789999999999999999999999988877777776665 333333 34448899999999999999999999999


Q ss_pred             cEEEEEEeCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHH
Q 028986          108 AVAVVVYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQ  186 (200)
Q Consensus       108 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~  186 (200)
                      |++++|||++++.+++.+..|+..+.... ..++|+++|+||+|+...+.+..++...++..++++++++||+++.|+++
T Consensus        97 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~  176 (201)
T 3oes_A           97 HGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQG  176 (201)
T ss_dssp             CEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHH
T ss_pred             CEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHH
Confidence            99999999999999999999999887653 45789999999999988888888999999999999999999999999999


Q ss_pred             HHHHHHHhhccc
Q 028986          187 LFEVLITCTSSY  198 (200)
Q Consensus       187 ~~~~i~~~~~~~  198 (200)
                      +|++|.+.+.+.
T Consensus       177 l~~~l~~~i~~~  188 (201)
T 3oes_A          177 IFTKVIQEIARV  188 (201)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhh
Confidence            999999988654

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=100.00  E-value=2.1e-33  Score=195.88  Aligned_cols=166  Identities=28%  Similarity=0.327  Sum_probs=130.9

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhh-cccccccCccEEE
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAA-LAPLYYRGAAVAV  111 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-~~~~~~~~~d~~i  111 (200)
                      .+||+|+|++|||||||+++|.+..+.....++.+.+.....+.+ ++..+.+.+||++|++.+.. .+..+++.+|+++
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i   80 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMV-DKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFL   80 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEE-TTEEEEEEEECCCCC--------CHHHHHCSEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEE-CCeEEEEEEEECCCccccchhhhhhhhccCCEEE
Confidence            579999999999999999999987766555555556665666665 45558999999999988775 6777888999999


Q ss_pred             EEEeCCCHHhHHHHHHHHHHHHHcCC-CCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Q 028986          112 VVYDITSPDSFNKAQYWVKELQKHGS-PDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEV  190 (200)
Q Consensus       112 ~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~  190 (200)
                      +|||++++++++.+..|+..+..... .++|+++|+||+|+.+.+.+..++..+++..++++++++||+++.|++++|++
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~  160 (169)
T 3q85_A           81 IVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEG  160 (169)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHH
Confidence            99999999999999999998877643 48999999999999877888899999999999999999999999999999999


Q ss_pred             HHHhhcccC
Q 028986          191 LITCTSSYC  199 (200)
Q Consensus       191 i~~~~~~~~  199 (200)
                      |.+.+..++
T Consensus       161 l~~~i~~~r  169 (169)
T 3q85_A          161 AVRQIRLRR  169 (169)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHHhcC
Confidence            999987653

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=100.00  E-value=8.3e-33  Score=194.27  Aligned_cols=167  Identities=32%  Similarity=0.604  Sum_probs=142.2

Q ss_pred             CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccE
Q 028986           30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAV  109 (200)
Q Consensus        30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~  109 (200)
                      ....++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+ ++..+.+.+||+||++.+...+..+++.+|+
T Consensus         4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   82 (177)
T 1wms_A            4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEV-DGHFVTMQIWDTAGQERFRSLRTPFYRGSDC   82 (177)
T ss_dssp             CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEE-TTEEEEEEEEECCCCGGGHHHHGGGGTTCSE
T ss_pred             ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEE-CCEEEEEEEEeCCCchhhhhhHHHHHhcCCE
Confidence            467899999999999999999999998887777777887776666666 4455899999999999999999999999999


Q ss_pred             EEEEEeCCCHHhHHHHHHHHHHHHHcCC----CCCeEEEEEeCCCCCCCCcCCHHHHHHHHH-HcCCeEEEecCCCCCCH
Q 028986          110 AVVVYDITSPDSFNKAQYWVKELQKHGS----PDIVMALVGNKADLHEKREVPAQDGIEYAE-KNGMFFIETSAKTADNI  184 (200)
Q Consensus       110 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~S~~~~~~i  184 (200)
                      +++|||++++.+++.+..|+..+.....    .++|+++|+||+|+. .++...+++.+++. ..+++++++||+++.|+
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  161 (177)
T 1wms_A           83 CLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNV  161 (177)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCH
Confidence            9999999999999999999988876543    678999999999997 45667788888888 56789999999999999


Q ss_pred             HHHHHHHHHhhccc
Q 028986          185 NQLFEVLITCTSSY  198 (200)
Q Consensus       185 ~~~~~~i~~~~~~~  198 (200)
                      +++|++|++.+.+.
T Consensus       162 ~~l~~~l~~~~~~~  175 (177)
T 1wms_A          162 AAAFEEAVRRVLAT  175 (177)
T ss_dssp             HHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999987653

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=100.00  E-value=8.3e-33  Score=197.32  Aligned_cols=168  Identities=30%  Similarity=0.543  Sum_probs=145.1

Q ss_pred             CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCcc
Q 028986           29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAA  108 (200)
Q Consensus        29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d  108 (200)
                      .....+||+|+|++|+|||||+++|.+..+...+.++.+..+.. .+.. ++..+.+.+||+||++.+...+..+++++|
T Consensus        19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~-~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   96 (194)
T 3reg_A           19 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSH-VMKY-KNEEFILHLWDTAGQEEYDRLRPLSYADSD   96 (194)
T ss_dssp             --CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEE-EEEE-TTEEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred             ccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEE-EEEE-CCEEEEEEEEECCCcHHHHHHhHhhccCCc
Confidence            45678999999999999999999999998877777777766643 3344 455588999999999999999999999999


Q ss_pred             EEEEEEeCCCHHhHHHH-HHHHHHHHHcCCCCCeEEEEEeCCCCCCC--CcCCHHHHHHHHHHcCCe-EEEecCCCCCCH
Q 028986          109 VAVVVYDITSPDSFNKA-QYWVKELQKHGSPDIVMALVGNKADLHEK--REVPAQDGIEYAEKNGMF-FIETSAKTADNI  184 (200)
Q Consensus       109 ~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~-~~~~S~~~~~~i  184 (200)
                      ++++|||++++.+++.+ ..|+..+... ..+.|+++|+||+|+...  +.+..+++.+++..+++. ++++||+++.|+
T Consensus        97 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  175 (194)
T 3reg_A           97 VVLLCFAVNNRTSFDNISTKWEPEIKHY-IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGL  175 (194)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHHHHH-CTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCH
Confidence            99999999999999987 7888888766 567999999999999753  667888999999999998 999999999999


Q ss_pred             HHHHHHHHHhhcccC
Q 028986          185 NQLFEVLITCTSSYC  199 (200)
Q Consensus       185 ~~~~~~i~~~~~~~~  199 (200)
                      +++|++|.+.+.+..
T Consensus       176 ~~l~~~l~~~i~~~~  190 (194)
T 3reg_A          176 NEVFEKSVDCIFSNK  190 (194)
T ss_dssp             HHHHHHHHHHHHCSC
T ss_pred             HHHHHHHHHHHHhcC
Confidence            999999999887653

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=100.00  E-value=3e-33  Score=202.69  Aligned_cols=169  Identities=24%  Similarity=0.468  Sum_probs=142.8

Q ss_pred             CCCCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccC
Q 028986           27 SDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRG  106 (200)
Q Consensus        27 ~~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~  106 (200)
                      +......+||+|+|++|||||||+++|++..+...+.++.+..+. ..+.+ ++..+.+.+||++|++.+...+..+++.
T Consensus        21 ~~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~   98 (214)
T 3q3j_B           21 PQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-ACLET-EEQRVELSLWDTSGSPYYDNVRPLCYSD   98 (214)
T ss_dssp             ------CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEC---CEEEEEEEEECCSGGGTTTGGGGCTT
T ss_pred             CCCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEE-EEEEE-CCEEEEEEEEECCCCHhHHHHHHHHcCC
Confidence            345567899999999999999999999999888777777776663 33444 4455899999999999999999999999


Q ss_pred             ccEEEEEEeCCCHHhHHH-HHHHHHHHHHcCCCCCeEEEEEeCCCCCCC------------CcCCHHHHHHHHHHcCC-e
Q 028986          107 AAVAVVVYDITSPDSFNK-AQYWVKELQKHGSPDIVMALVGNKADLHEK------------REVPAQDGIEYAEKNGM-F  172 (200)
Q Consensus       107 ~d~~i~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~  172 (200)
                      +|++|+|||++++.+++. +..|+..+... ..++|+++|+||+|+...            +.+..+++.+++..+++ +
T Consensus        99 ~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  177 (214)
T 3q3j_B           99 SDAVLLCFDISRPETVDSALKKWRTEILDY-CPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEI  177 (214)
T ss_dssp             CSEEEEEEETTCTHHHHHHHTHHHHHHHHH-CTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSE
T ss_pred             CeEEEEEEECcCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCE
Confidence            999999999999999998 69999999877 468999999999999653            66888999999999999 9


Q ss_pred             EEEecCCCCCC-HHHHHHHHHHhhccc
Q 028986          173 FIETSAKTADN-INQLFEVLITCTSSY  198 (200)
Q Consensus       173 ~~~~S~~~~~~-i~~~~~~i~~~~~~~  198 (200)
                      +++|||+++.| ++++|++|++.+.+.
T Consensus       178 ~~e~SA~~g~g~v~~lf~~l~~~~~~~  204 (214)
T 3q3j_B          178 YLEGSAFTSEKSIHSIFRTASMLCLNK  204 (214)
T ss_dssp             EEECCTTTCHHHHHHHHHHHHHHHHC-
T ss_pred             EEEeccCCCcccHHHHHHHHHHHHhcc
Confidence            99999999998 999999999987654

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=100.00  E-value=2.8e-33  Score=197.38  Aligned_cols=169  Identities=34%  Similarity=0.617  Sum_probs=133.3

Q ss_pred             CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccE
Q 028986           30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAV  109 (200)
Q Consensus        30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~  109 (200)
                      ....++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+.++..+.+.+||+||++.+...+..+++.+|+
T Consensus         5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   84 (182)
T 1ky3_A            5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC   84 (182)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred             cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence            45679999999999999999999999988777777777777777777664556899999999999999999999999999


Q ss_pred             EEEEEeCCCHHhHHHHHHHHHHHHHcCC----CCCeEEEEEeCCCCCCC-CcCCHHHHHHHHH-HcCCeEEEecCCCCCC
Q 028986          110 AVVVYDITSPDSFNKAQYWVKELQKHGS----PDIVMALVGNKADLHEK-REVPAQDGIEYAE-KNGMFFIETSAKTADN  183 (200)
Q Consensus       110 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~p~iiv~nK~D~~~~-~~~~~~~~~~~~~-~~~~~~~~~S~~~~~~  183 (200)
                      +|+|||++++.+++.+..|+..+.....    .+.|+++|+||+|+... +.+..+++.+++. ..+++++++|++++.|
T Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~g  164 (182)
T 1ky3_A           85 CVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAIN  164 (182)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBS
T ss_pred             EEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCC
Confidence            9999999999999999999988876533    67899999999999543 4566788888887 4678999999999999


Q ss_pred             HHHHHHHHHHhhccc
Q 028986          184 INQLFEVLITCTSSY  198 (200)
Q Consensus       184 i~~~~~~i~~~~~~~  198 (200)
                      ++++|++|.+.+.++
T Consensus       165 i~~l~~~l~~~~~~~  179 (182)
T 1ky3_A          165 VDTAFEEIARSALQQ  179 (182)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999987654

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=6.5e-33  Score=197.70  Aligned_cols=168  Identities=44%  Similarity=0.753  Sum_probs=146.8

Q ss_pred             CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCcc
Q 028986           29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAA  108 (200)
Q Consensus        29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d  108 (200)
                      .....++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+ ++..+.+.+||+||++.+...+..+++.+|
T Consensus        11 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   89 (195)
T 1x3s_A           11 DVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISV-DGNKAKLAIWDTAGQERFRTLTPSYYRGAQ   89 (195)
T ss_dssp             TEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEE-TTEEEEEEEEEECSSGGGCCSHHHHHTTCC
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEE-CCeEEEEEEEeCCCchhhhhhhHHHhccCC
Confidence            3456799999999999999999999999888777788887777666666 444589999999999999999999999999


Q ss_pred             EEEEEEeCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHH
Q 028986          109 VAVVVYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQL  187 (200)
Q Consensus       109 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~  187 (200)
                      ++|+|+|++++.+++.+..|+..+.... ..++|+++|+||+|+. .+.+..+++.+++..++++++++||+++.|++++
T Consensus        90 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  168 (195)
T 1x3s_A           90 GVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE-NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCA  168 (195)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS-SCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc-ccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHH
Confidence            9999999999999999999999887654 3579999999999994 4456778889999999999999999999999999


Q ss_pred             HHHHHHhhccc
Q 028986          188 FEVLITCTSSY  198 (200)
Q Consensus       188 ~~~i~~~~~~~  198 (200)
                      |++|.+.+.+.
T Consensus       169 ~~~l~~~~~~~  179 (195)
T 1x3s_A          169 FEELVEKIIQT  179 (195)
T ss_dssp             HHHHHHHHHTS
T ss_pred             HHHHHHHHHhh
Confidence            99999987653

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=6.4e-33  Score=200.16  Aligned_cols=185  Identities=28%  Similarity=0.329  Sum_probs=135.1

Q ss_pred             CCCCCCCCCccccCCCCCCCCceeeEEEEcCCCCcHHHHHHHHHcCCC--CCCCccccceeEEEEEEEecCCcEEEEEEE
Q 028986           11 SSGQSGGLNNLENAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQF--DPTSKVTVGASFLSQTIALQDSTTVKFEIW   88 (200)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   88 (200)
                      +.+.+-.+........+......+||+|+|++|||||||+++|++...  ...+ ++.+.++....+.+ ++..+.+.+|
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~-~~~g~d~~~~~i~~-~~~~~~l~~~   92 (211)
T 2g3y_A           15 TENLYFQSMSTDSVISSESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDC-EVLGEDTYERTLMV-DGESATIILL   92 (211)
T ss_dssp             --------------------CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEE-TTEEEEEEEE
T ss_pred             cCCccccccccCCCcccccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcC-CccceeeEEEEEEE-CCeeeEEEEe
Confidence            333444444444444445566789999999999999999999997433  2322 33555555555555 5556889999


Q ss_pred             eCCChhh-hhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCcCCHHHHHHHH
Q 028986           89 DTAGQER-YAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYA  166 (200)
Q Consensus        89 D~~g~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~  166 (200)
                      ||+|.+. +..+...+++.+|++|+|||++++.+|+.+..|+..+.... ..++|+++|+||+|+...+.+..++...++
T Consensus        93 Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a  172 (211)
T 2g3y_A           93 DMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACA  172 (211)
T ss_dssp             CCTTTTHHHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHH
T ss_pred             ecCCCcchhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHH
Confidence            9999876 45566778899999999999999999999999988876542 457999999999999776777788888888


Q ss_pred             HHcCCeEEEecCCCCCCHHHHHHHHHHhhcc
Q 028986          167 EKNGMFFIETSAKTADNINQLFEVLITCTSS  197 (200)
Q Consensus       167 ~~~~~~~~~~S~~~~~~i~~~~~~i~~~~~~  197 (200)
                      ..++++++++||++|.|++++|++|.+.+..
T Consensus       173 ~~~~~~~~e~SAk~g~~v~elf~~l~~~i~~  203 (211)
T 2g3y_A          173 VVFDCKFIETSAAVQHNVKELFEGIVRQVRL  203 (211)
T ss_dssp             HHHTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             HHcCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            8899999999999999999999999998754

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=100.00  E-value=4.2e-33  Score=196.28  Aligned_cols=168  Identities=30%  Similarity=0.521  Sum_probs=145.5

Q ss_pred             CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCcc
Q 028986           29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAA  108 (200)
Q Consensus        29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d  108 (200)
                      +....++|+|+|++|+|||||+++|.+..+...+.++.+..+. ..+.. ++..+.+.+||+||++++...+..+++.+|
T Consensus         5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d   82 (181)
T 2fn4_A            5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSV-DGIPARLDILDTAGQEEFGAMREQYMRAGH   82 (181)
T ss_dssp             CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEE-TTEEEEEEEEECCCTTTTSCCHHHHHHHCS
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEE-CCEEEEEEEEECCCchhhHHHHHHHHhhCC
Confidence            3456789999999999999999999999887777777776654 44444 445578999999999999999999999999


Q ss_pred             EEEEEEeCCCHHhHHHHHHHHHHHH-HcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHH
Q 028986          109 VAVVVYDITSPDSFNKAQYWVKELQ-KHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQL  187 (200)
Q Consensus       109 ~~i~v~d~~~~~s~~~~~~~~~~i~-~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~  187 (200)
                      ++++|||++++.+++.+..|+..+. .....++|+++|+||+|+...+++..++...++...+++++++||+++.|++++
T Consensus        83 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l  162 (181)
T 2fn4_A           83 GFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEA  162 (181)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHH
Confidence            9999999999999999999998874 444668999999999999877778888889999999999999999999999999


Q ss_pred             HHHHHHhhccc
Q 028986          188 FEVLITCTSSY  198 (200)
Q Consensus       188 ~~~i~~~~~~~  198 (200)
                      |++|.+.+.+.
T Consensus       163 ~~~l~~~~~~~  173 (181)
T 2fn4_A          163 FEQLVRAVRKY  173 (181)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999988654

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=100.00  E-value=1.4e-32  Score=197.31  Aligned_cols=166  Identities=43%  Similarity=0.745  Sum_probs=144.0

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCc-----------------------------
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDST-----------------------------   81 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------   81 (200)
                      +..++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+.+..                             
T Consensus         5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (208)
T 3clv_A            5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN   84 (208)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence            467899999999999999999999998877777777777766666554321                             


Q ss_pred             -------EEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCC
Q 028986           82 -------TVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK  154 (200)
Q Consensus        82 -------~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~  154 (200)
                             .+.+.+||+||++.+...+..+++.+|++++|+|++++.+++.+..|+..+.....  .|+++|+||+| ...
T Consensus        85 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--~piilv~NK~D-~~~  161 (208)
T 3clv_A           85 NYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN--YIIILVANKID-KNK  161 (208)
T ss_dssp             CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--CEEEEEEECTT-CC-
T ss_pred             cccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC--CcEEEEEECCC-ccc
Confidence                   17899999999999999999999999999999999999999999999998877643  89999999999 555


Q ss_pred             CcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHhhcccC
Q 028986          155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLITCTSSYC  199 (200)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~~~~~~  199 (200)
                      +....+++.+++..++++++++||+++.|++++|++|.+.+.++.
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~  206 (208)
T 3clv_A          162 FQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKNI  206 (208)
T ss_dssp             CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence            677788999999999999999999999999999999999887653

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=100.00  E-value=2e-33  Score=199.54  Aligned_cols=165  Identities=25%  Similarity=0.429  Sum_probs=139.0

Q ss_pred             CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccE
Q 028986           30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAV  109 (200)
Q Consensus        30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~  109 (200)
                      ....+||+|+|++|||||||+++|++..+...+.++.+..+. ..+.+ ++..+.+.+||++|++.+... ..+++.+|+
T Consensus        18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~   94 (187)
T 3c5c_A           18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYS-SEETV-DHQPVHLRVMDTADLDTPRNC-ERYLNWAHA   94 (187)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEE-EEEEE-TTEEEEEEEEECCC---CCCT-HHHHTTCSE
T ss_pred             CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceee-EEEEE-CCEEEEEEEEECCCCCcchhH-HHHHhhCCE
Confidence            366799999999999999999999999887777777776653 33444 455689999999999887764 668899999


Q ss_pred             EEEEEeCCCHHhHHHHHHHHHHHHHcC---CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecC-CCCCCHH
Q 028986          110 AVVVYDITSPDSFNKAQYWVKELQKHG---SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSA-KTADNIN  185 (200)
Q Consensus       110 ~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~-~~~~~i~  185 (200)
                      +++|||++++.+++.+..|+..+....   ..++|+++|+||+|+...+.+..+++.+++..++++++++|| +++.|++
T Consensus        95 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~  174 (187)
T 3c5c_A           95 FLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQ  174 (187)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHH
Confidence            999999999999999999999887653   258899999999999877778889999999999999999999 8999999


Q ss_pred             HHHHHHHHhhcc
Q 028986          186 QLFEVLITCTSS  197 (200)
Q Consensus       186 ~~~~~i~~~~~~  197 (200)
                      ++|++|++.+.+
T Consensus       175 ~lf~~l~~~i~~  186 (187)
T 3c5c_A          175 HVFHEAVREARR  186 (187)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhh
Confidence            999999998765

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=7.2e-33  Score=200.20  Aligned_cols=168  Identities=40%  Similarity=0.747  Sum_probs=145.6

Q ss_pred             CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCcc
Q 028986           29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAA  108 (200)
Q Consensus        29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d  108 (200)
                      .....++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+ ++..+.+.+||+||++.+...+..+++.+|
T Consensus        16 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   94 (213)
T 3cph_A           16 SYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDI-NGKKVKLQLWDTAGQERFRTITTAYYRGAM   94 (213)
T ss_dssp             ----CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEE-TTEEEEEEEECCTTGGGGTCCCHHHHTTCS
T ss_pred             CCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEE-CCEEEEEEEEeCCCcHHHHHHHHHHhccCC
Confidence            4466799999999999999999999998887777777777776666666 444578999999999999999999999999


Q ss_pred             EEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Q 028986          109 VAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF  188 (200)
Q Consensus       109 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~  188 (200)
                      ++++|||++++.+++.+..|+..+......++|+++|+||+|+ ..+....++...++..++++++++||+++.|++++|
T Consensus        95 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  173 (213)
T 3cph_A           95 GIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIF  173 (213)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTC-SSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC-cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            9999999999999999999999988876678999999999999 445667788888999899999999999999999999


Q ss_pred             HHHHHhhccc
Q 028986          189 EVLITCTSSY  198 (200)
Q Consensus       189 ~~i~~~~~~~  198 (200)
                      ++|.+.+.+.
T Consensus       174 ~~l~~~~~~~  183 (213)
T 3cph_A          174 FTLAKLIQEK  183 (213)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999887653

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=100.00  E-value=1.4e-32  Score=194.71  Aligned_cols=163  Identities=18%  Similarity=0.310  Sum_probs=137.8

Q ss_pred             CCCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCc
Q 028986           28 DAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGA  107 (200)
Q Consensus        28 ~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~  107 (200)
                      ......+||+|+|++|||||||+++|++..+...+.++ ...+ ...+.+ ++..+.+.+|||+|++.+.     +++.+
T Consensus        15 ~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t-~~~~-~~~~~~-~~~~~~l~i~Dt~G~~~~~-----~~~~~   86 (184)
T 3ihw_A           15 YFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-GGRF-KKEIVV-DGQSYLLLIRDEGGPPELQ-----FAAWV   86 (184)
T ss_dssp             -CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTT-CEEE-EEEEEE-TTEEEEEEEEECSSSCCHH-----HHHHC
T ss_pred             CCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCC-cceE-EEEEEE-CCEEEEEEEEECCCChhhh-----eecCC
Confidence            34577899999999999999999999999887766665 3333 345555 4556899999999998766     77889


Q ss_pred             cEEEEEEeCCCHHhHHHHHHHHHHHHHcCC-CCCeEEEEEeCCCCC--CCCcCCHHHHHHHHHHcC-CeEEEecCCCCCC
Q 028986          108 AVAVVVYDITSPDSFNKAQYWVKELQKHGS-PDIVMALVGNKADLH--EKREVPAQDGIEYAEKNG-MFFIETSAKTADN  183 (200)
Q Consensus       108 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~D~~--~~~~~~~~~~~~~~~~~~-~~~~~~S~~~~~~  183 (200)
                      |++++|||++++.+++.+..|+..+..... .++|+++|+||+|+.  ..+.+..+++.+++..++ ++++++||+++.|
T Consensus        87 ~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~g  166 (184)
T 3ihw_A           87 DAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLN  166 (184)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBT
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCC
Confidence            999999999999999999999999987643 578999999999993  456788889999999986 8999999999999


Q ss_pred             HHHHHHHHHHhhccc
Q 028986          184 INQLFEVLITCTSSY  198 (200)
Q Consensus       184 i~~~~~~i~~~~~~~  198 (200)
                      ++++|++|++.+.+.
T Consensus       167 v~~lf~~l~~~i~~~  181 (184)
T 3ihw_A          167 VERVFQDVAQKVVAL  181 (184)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999987654

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=100.00  E-value=1.1e-33  Score=205.35  Aligned_cols=170  Identities=32%  Similarity=0.502  Sum_probs=147.6

Q ss_pred             CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCcc
Q 028986           29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAA  108 (200)
Q Consensus        29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d  108 (200)
                      .....+||+|+|++|||||||+++|++..+...+.++.+...........++..+.+.+||+||++.+...+..++..+|
T Consensus         7 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   86 (218)
T 4djt_A            7 RRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGAS   86 (218)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCS
T ss_pred             cccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCC
Confidence            44678999999999999999999999988777777777777777766666666689999999999999999999999999


Q ss_pred             EEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Q 028986          109 VAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF  188 (200)
Q Consensus       109 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~  188 (200)
                      ++|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+++..++...++...+++++++||++|.|++++|
T Consensus        87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~  166 (218)
T 4djt_A           87 GAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPF  166 (218)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHH
T ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHH
Confidence            99999999999999999999999988767779999999999998877788888889988899999999999999999999


Q ss_pred             HHHHHhhccc
Q 028986          189 EVLITCTSSY  198 (200)
Q Consensus       189 ~~i~~~~~~~  198 (200)
                      ++|.+.+.++
T Consensus       167 ~~l~~~~~~~  176 (218)
T 4djt_A          167 LHLARIFTGR  176 (218)
T ss_dssp             HHHHHHHHCC
T ss_pred             HHHHHHHhcc
Confidence            9999988765

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=100.00  E-value=6.2e-33  Score=192.98  Aligned_cols=165  Identities=32%  Similarity=0.517  Sum_probs=140.1

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEE
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAV  111 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i  111 (200)
                      +.++|+|+|++|+|||||+++|.+..+...+.++.+..+. ..+.. ++..+.+.+||+||++++...+..+++.+|+++
T Consensus         3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   80 (168)
T 1u8z_A            3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVL-DGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL   80 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE-EEEEE-TTEEEEEEEEECCC---CHHHHHHHHHHCSEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEE-EEEEE-CCEEEEEEEEECCCcchhHHHHHHHhhcCCEEE
Confidence            4689999999999999999999998877666666665553 33344 445588999999999998899999999999999


Q ss_pred             EEEeCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Q 028986          112 VVYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEV  190 (200)
Q Consensus       112 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~  190 (200)
                      +|||++++.+++.+..|+..+.... ..+.|+++|+||+|+...++...+++.+++..++++++++||+++.|++++|++
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  160 (168)
T 1u8z_A           81 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFD  160 (168)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHH
Confidence            9999999999999999998887654 357999999999999877778888999999999999999999999999999999


Q ss_pred             HHHhhccc
Q 028986          191 LITCTSSY  198 (200)
Q Consensus       191 i~~~~~~~  198 (200)
                      |.+.+.++
T Consensus       161 l~~~i~~~  168 (168)
T 1u8z_A          161 LMREIRAR  168 (168)
T ss_dssp             HHHHHHTC
T ss_pred             HHHHHHhC
Confidence            99988653

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=100.00  E-value=1.2e-32  Score=193.02  Aligned_cols=166  Identities=30%  Similarity=0.386  Sum_probs=131.5

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhh--hhhcccccccCcc
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQER--YAALAPLYYRGAA  108 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--~~~~~~~~~~~~d  108 (200)
                      ++.++|+|+|++|||||||+++|.+..+...+. +.+.+.....+.+ ++..+.+.+||+||++.  +......+++.+|
T Consensus         2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~   79 (175)
T 2nzj_A            2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHE-QLGEDVYERTLTV-DGEDTTLVVVDTWEAEKLDKSWSQESCLQGGS   79 (175)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHCC-----CC-CSSSSEEEEEEEE-TTEEEEEEEECCC-------CHHHHHTTTSCS
T ss_pred             ceEEEEEEECCCCccHHHHHHHHhcCCCccccC-ccccceeEEEEEE-CCEEEEEEEEecCCCCccchhhhHHhhcccCC
Confidence            357899999999999999999999987655433 4555555555555 45558899999999877  5566677889999


Q ss_pred             EEEEEEeCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHH
Q 028986          109 VAVVVYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQL  187 (200)
Q Consensus       109 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~  187 (200)
                      ++++|||++++.+++.+..|+..+.... ..++|+++|+||+|+...+++..++...++..++++++++||++|.|++++
T Consensus        80 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l  159 (175)
T 2nzj_A           80 AYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAEL  159 (175)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHH
Confidence            9999999999999999999998887653 457899999999999887778888888899899999999999999999999


Q ss_pred             HHHHHHhhccc
Q 028986          188 FEVLITCTSSY  198 (200)
Q Consensus       188 ~~~i~~~~~~~  198 (200)
                      |++|.+.+.++
T Consensus       160 ~~~l~~~~~~~  170 (175)
T 2nzj_A          160 FEGVVRQLRLR  170 (175)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999988654

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=100.00  E-value=1e-32  Score=191.84  Aligned_cols=163  Identities=30%  Similarity=0.393  Sum_probs=120.7

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEE
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVV  112 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~  112 (200)
                      .+||+++|++|||||||+++|.+...... .++.+..+ ...+.+ ++..+.+.+||++|++.+...+..+++.+|++++
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~-~~~~~~~~-~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   78 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVEDGPE-AEAAGHTY-DRSIVV-DGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVI   78 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEE-TTEEEEEEEEECC---------------CCEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCccccCC-CCccccce-EEEEEE-CCEEEEEEEEECCCCccchhhhhhhhhhCCEEEE
Confidence            57999999999999999999997665432 33344444 334444 4556899999999999999999999999999999


Q ss_pred             EEeCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Q 028986          113 VYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVL  191 (200)
Q Consensus       113 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i  191 (200)
                      |||++++.+++.+..|+..+.... ..++|+++|+||+|+...+.+..++...++...+++++++||++|.|++++|++|
T Consensus        79 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  158 (166)
T 3q72_A           79 VYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGV  158 (166)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Confidence            999999999999999998887653 5679999999999998888888999999999999999999999999999999999


Q ss_pred             HHhhccc
Q 028986          192 ITCTSSY  198 (200)
Q Consensus       192 ~~~~~~~  198 (200)
                      .+.+.++
T Consensus       159 ~~~~~~~  165 (166)
T 3q72_A          159 VRQIRLR  165 (166)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhc
Confidence            9998765

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=100.00  E-value=6.9e-33  Score=196.15  Aligned_cols=166  Identities=32%  Similarity=0.514  Sum_probs=143.0

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA  110 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  110 (200)
                      ...++|+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.. ++..+.+.+||+||++++...+..+++.+|++
T Consensus        16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   93 (187)
T 2a9k_A           16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVL-DGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF   93 (187)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEE-TTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEE-CCEEEEEEEEECCCCcccHHHHHHHhccCCEE
Confidence            4679999999999999999999999887776666666555 333344 44557899999999998888999999999999


Q ss_pred             EEEEeCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Q 028986          111 VVVYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFE  189 (200)
Q Consensus       111 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~  189 (200)
                      ++|||++++.+++.+..|+..+.... ..++|+++|+||+|+...+++..+++.+++..++++++++|++++.|++++|+
T Consensus        94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  173 (187)
T 2a9k_A           94 LCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFF  173 (187)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHH
Confidence            99999999999999999998887654 35799999999999987777788899999999999999999999999999999


Q ss_pred             HHHHhhccc
Q 028986          190 VLITCTSSY  198 (200)
Q Consensus       190 ~i~~~~~~~  198 (200)
                      +|.+.+.++
T Consensus       174 ~l~~~i~~~  182 (187)
T 2a9k_A          174 DLMREIRAR  182 (187)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999988653

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=100.00  E-value=1.1e-32  Score=191.78  Aligned_cols=163  Identities=34%  Similarity=0.547  Sum_probs=140.9

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEE
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAV  111 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i  111 (200)
                      +.++|+++|++|||||||+++|.+..+...+.++.+..+. ..+.. ++..+.+.+||+||++.+...+..+++.+|+++
T Consensus         2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   79 (167)
T 1c1y_A            2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEV-DCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFA   79 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEES-SSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEE-EEEEE-CCEEEEEEEEECCChHHHHHHHHHHhccCCEEE
Confidence            4689999999999999999999998887777776665553 33444 455689999999999988888999999999999


Q ss_pred             EEEeCCCHHhHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHc-CCeEEEecCCCCCCHHHHHH
Q 028986          112 VVYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAEKN-GMFFIETSAKTADNINQLFE  189 (200)
Q Consensus       112 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~S~~~~~~i~~~~~  189 (200)
                      +|||++++.+++.+..|+..+... ...+.|+++|+||+|+...+.+..+++..++..+ +++++++||++|.|++++|+
T Consensus        80 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  159 (167)
T 1c1y_A           80 LVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFY  159 (167)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHH
Confidence            999999999999998898887664 3568999999999999877777888889999887 78999999999999999999


Q ss_pred             HHHHhhc
Q 028986          190 VLITCTS  196 (200)
Q Consensus       190 ~i~~~~~  196 (200)
                      +|.+.+.
T Consensus       160 ~l~~~i~  166 (167)
T 1c1y_A          160 DLVRQIN  166 (167)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHh
Confidence            9998875

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=100.00  E-value=1.6e-32  Score=197.40  Aligned_cols=167  Identities=32%  Similarity=0.514  Sum_probs=144.7

Q ss_pred             CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCcc
Q 028986           29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAA  108 (200)
Q Consensus        29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d  108 (200)
                      .....++|+|+|++|||||||+++|.+..+...+.++.+..+ ...+.+ ++..+.+.+||+||++.+...+..+++.+|
T Consensus        10 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~   87 (206)
T 2bov_A           10 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVL-DGEEVQIDILDTAGQEDYAAIRDNYFRSGE   87 (206)
T ss_dssp             -CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEE-TTEEEEEEEEECCCTTCCHHHHHHHHHHCS
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEE-CCEEEEEEEEcCCChhhhHHHHHHHHhhCC
Confidence            445679999999999999999999999887777777666555 334444 445578999999999999999999999999


Q ss_pred             EEEEEEeCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHH
Q 028986          109 VAVVVYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQL  187 (200)
Q Consensus       109 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~  187 (200)
                      ++++|||++++.+++.+..|+..+.... ..++|+++|+||+|+...+++..+++..++..++++++++||++|.|++++
T Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l  167 (206)
T 2bov_A           88 GFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKV  167 (206)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Confidence            9999999999999999999999887764 357999999999999877778888999999999999999999999999999


Q ss_pred             HHHHHHhhcc
Q 028986          188 FEVLITCTSS  197 (200)
Q Consensus       188 ~~~i~~~~~~  197 (200)
                      |++|++.+.+
T Consensus       168 ~~~l~~~i~~  177 (206)
T 2bov_A          168 FFDLMREIRA  177 (206)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999988765

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=3.8e-32  Score=193.81  Aligned_cols=165  Identities=27%  Similarity=0.550  Sum_probs=141.8

Q ss_pred             CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCcc
Q 028986           29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAA  108 (200)
Q Consensus        29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d  108 (200)
                      +....++|+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+ ++..+.+.+||+||++++...+..+++++|
T Consensus        14 ~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   91 (194)
T 2atx_A           14 PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTV-GGKQYLLGLYDTAGQEDYDRLRPLSYPMTD   91 (194)
T ss_dssp             CEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEES-SSCEEEEEEECCCCSSSSTTTGGGGCTTCS
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEE-CCEEEEEEEEECCCCcchhHHHHHhcCCCC
Confidence            446789999999999999999999999888777777776655 333444 455589999999999999999999999999


Q ss_pred             EEEEEEeCCCHHhHHHHH-HHHHHHHHcCCCCCeEEEEEeCCCCCCC------------CcCCHHHHHHHHHHcCC-eEE
Q 028986          109 VAVVVYDITSPDSFNKAQ-YWVKELQKHGSPDIVMALVGNKADLHEK------------REVPAQDGIEYAEKNGM-FFI  174 (200)
Q Consensus       109 ~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~  174 (200)
                      ++++|||++++.+++.+. .|+..+... ..++|+++|+||+|+...            +.+..+++.+++..+++ +++
T Consensus        92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  170 (194)
T 2atx_A           92 VFLICFSVVNPASFQNVKEEWVPELKEY-APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYV  170 (194)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHHHHH-STTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEE
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEE
Confidence            999999999999999886 798888876 347899999999999754            45778888999999888 899


Q ss_pred             EecCCCCCCHHHHHHHHHHhhc
Q 028986          175 ETSAKTADNINQLFEVLITCTS  196 (200)
Q Consensus       175 ~~S~~~~~~i~~~~~~i~~~~~  196 (200)
                      ++||+++.|++++|++|.+.+.
T Consensus       171 ~~Sa~~g~gi~~l~~~l~~~i~  192 (194)
T 2atx_A          171 ECSALTQKGLKTVFDEAIIAIL  192 (194)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EeeCCCCCCHHHHHHHHHHHHh
Confidence            9999999999999999998764

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=100.00  E-value=6.3e-32  Score=193.88  Aligned_cols=166  Identities=33%  Similarity=0.640  Sum_probs=141.6

Q ss_pred             CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCcc
Q 028986           29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAA  108 (200)
Q Consensus        29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d  108 (200)
                      .....+||+|+|++|+|||||+++|.+..+...+.++.+..+.. .+.+ ++..+.+.+||+||++.+...+..+++.+|
T Consensus        21 m~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d   98 (201)
T 2gco_A           21 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIA-DIEV-DGKQVELALWDTAGQEDYDRLRPLSYPDTD   98 (201)
T ss_dssp             -CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEE-EEEE-TTEEEEEEEECCCCSGGGTTTGGGGCTTCS
T ss_pred             CcccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEE-EEEE-CCEEEEEEEEECCCchhHHHHHHHhcCCCC
Confidence            34578999999999999999999999988877777776666543 3444 455589999999999999999999999999


Q ss_pred             EEEEEEeCCCHHhHHHH-HHHHHHHHHcCCCCCeEEEEEeCCCCCCC------------CcCCHHHHHHHHHHcCC-eEE
Q 028986          109 VAVVVYDITSPDSFNKA-QYWVKELQKHGSPDIVMALVGNKADLHEK------------REVPAQDGIEYAEKNGM-FFI  174 (200)
Q Consensus       109 ~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~  174 (200)
                      ++++|||++++.+++.+ ..|+..+... ..+.|+++|+||+|+...            +.+..++..+++...++ +++
T Consensus        99 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  177 (201)
T 2gco_A           99 VILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYL  177 (201)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHHHHH-STTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEE
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEE
Confidence            99999999999999988 7888888775 357899999999999765            45677888899998888 899


Q ss_pred             EecCCCCCCHHHHHHHHHHhhcc
Q 028986          175 ETSAKTADNINQLFEVLITCTSS  197 (200)
Q Consensus       175 ~~S~~~~~~i~~~~~~i~~~~~~  197 (200)
                      ++||+++.|++++|++|.+.+.+
T Consensus       178 ~~SA~~g~gi~~l~~~i~~~~l~  200 (201)
T 2gco_A          178 ECSAKTKEGVREVFEMATRAGLQ  200 (201)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHC
T ss_pred             EeeCCCCCCHHHHHHHHHHHHhc
Confidence            99999999999999999988754

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=100.00  E-value=2.8e-32  Score=196.29  Aligned_cols=166  Identities=36%  Similarity=0.679  Sum_probs=142.6

Q ss_pred             CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccE
Q 028986           30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAV  109 (200)
Q Consensus        30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~  109 (200)
                      ....++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+. +..+.+.+||+||++.+...+..+++.+|+
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   83 (207)
T 1vg8_A            5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVD-DRLVTMQIWDTAGQERFQSLGVAFYRGADC   83 (207)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESS-SCEEEEEEEEECSSGGGSCSCCGGGTTCSE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEEC-CEEEEEEEEeCCCcHHHHHhHHHHHhCCcE
Confidence            4568999999999999999999999998887777777777766666664 445899999999999999999999999999


Q ss_pred             EEEEEeCCCHHhHHHHHHHHHHHHHcCC----CCCeEEEEEeCCCCCCCCcCCHHHHHHHHH-HcCCeEEEecCCCCCCH
Q 028986          110 AVVVYDITSPDSFNKAQYWVKELQKHGS----PDIVMALVGNKADLHEKREVPAQDGIEYAE-KNGMFFIETSAKTADNI  184 (200)
Q Consensus       110 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~S~~~~~~i  184 (200)
                      +|+|||++++.+++.+..|+..+.....    .+.|+++|+||+|+. .+....+++..++. ..+++++++||++|.|+
T Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi  162 (207)
T 1vg8_A           84 CVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE-NRQVATKRAQAWCYSKNNIPYFETSAKEAINV  162 (207)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS-CCCSCHHHHHHHHHHTTSCCEEECBTTTTBSH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCH
Confidence            9999999999999999999988766532    478999999999997 44566778888887 66889999999999999


Q ss_pred             HHHHHHHHHhhcc
Q 028986          185 NQLFEVLITCTSS  197 (200)
Q Consensus       185 ~~~~~~i~~~~~~  197 (200)
                      +++|++|.+.+.+
T Consensus       163 ~~l~~~l~~~~~~  175 (207)
T 1vg8_A          163 EQAFQTIARNALK  175 (207)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988754

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=100.00  E-value=5.9e-32  Score=192.16  Aligned_cols=172  Identities=32%  Similarity=0.505  Sum_probs=131.3

Q ss_pred             CCCCCCCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhccccc
Q 028986           24 AGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLY  103 (200)
Q Consensus        24 ~~~~~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~  103 (200)
                      +....+....++|+++|.+|||||||+++|.+..+...+.++.+..+ ...+.. ++..+.+.+||+||++++...+..+
T Consensus        12 ~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~   89 (190)
T 3con_A           12 ENLYFQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVI-DGETCLLDILDTAGQEEYSAMRDQY   89 (190)
T ss_dssp             -------CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEE-TTEEEEEEEEECCC-----------
T ss_pred             ccccccccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEE-CCEEEEEEEEECCChHHHHHHHHHh
Confidence            33444556789999999999999999999999887666666555444 333444 4455889999999999999999999


Q ss_pred             ccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCC
Q 028986          104 YRGAAVAVVVYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTAD  182 (200)
Q Consensus       104 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~  182 (200)
                      ++.+|++++|||++++.+++.+..|+..+.... ..++|+++|+||+|+.. +....+++.++++.++++++++|++++.
T Consensus        90 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  168 (190)
T 3con_A           90 MRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQ  168 (190)
T ss_dssp             CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCT
T ss_pred             hCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc-ccCCHHHHHHHHHHcCCeEEEEeCCCCC
Confidence            999999999999999999999999998887653 35789999999999876 4567888899999999999999999999


Q ss_pred             CHHHHHHHHHHhhccc
Q 028986          183 NINQLFEVLITCTSSY  198 (200)
Q Consensus       183 ~i~~~~~~i~~~~~~~  198 (200)
                      |++++|++|.+.+.++
T Consensus       169 gi~~l~~~l~~~~~~~  184 (190)
T 3con_A          169 GVEDAFYTLVREIRQY  184 (190)
T ss_dssp             THHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHH
Confidence            9999999999988764

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=100.00  E-value=4.9e-33  Score=200.22  Aligned_cols=167  Identities=26%  Similarity=0.462  Sum_probs=109.6

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcC--CCCCCCccccceeEEEEEEEecCCc-EEEEEEEeCCChhhhhhcccccccCc
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRG--QFDPTSKVTVGASFLSQTIALQDST-TVKFEIWDTAGQERYAALAPLYYRGA  107 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~D~~g~~~~~~~~~~~~~~~  107 (200)
                      ...++|+|+|++|+|||||+++|.+.  .+...+.++.+.++....+.+.+.. .+.+.+||+||++.+...+..+++.+
T Consensus        18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   97 (208)
T 2yc2_C           18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV   97 (208)
T ss_dssp             EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence            56799999999999999999999998  6666666666666656666664431 58999999999999999999999999


Q ss_pred             cEEEEEEeCCCHHhHHHHHHHHHHHHHcCC---CCCeEEEEEeCCCCCC-CCcCCHHHHHHHHHHcCCeEEEecCCC-CC
Q 028986          108 AVAVVVYDITSPDSFNKAQYWVKELQKHGS---PDIVMALVGNKADLHE-KREVPAQDGIEYAEKNGMFFIETSAKT-AD  182 (200)
Q Consensus       108 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~p~iiv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~-~~  182 (200)
                      |++|+|||++++.+++.+..|+..+.....   .++|+++|+||+|+.. .+.+..+++.+++..++++++++|+++ +.
T Consensus        98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~  177 (208)
T 2yc2_C           98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGK  177 (208)
T ss_dssp             CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-----
T ss_pred             cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCc
Confidence            999999999999999999999999988765   6899999999999987 677888899999999999999999999 99


Q ss_pred             CHHHHHHHHHHhhcc
Q 028986          183 NINQLFEVLITCTSS  197 (200)
Q Consensus       183 ~i~~~~~~i~~~~~~  197 (200)
                      |++++|++|.+.+.+
T Consensus       178 gi~~l~~~i~~~~~~  192 (208)
T 2yc2_C          178 DADAPFLSIATTFYR  192 (208)
T ss_dssp             --CHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHH
Confidence            999999999987754

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=100.00  E-value=8.9e-33  Score=192.01  Aligned_cols=164  Identities=32%  Similarity=0.527  Sum_probs=141.6

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEE
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAV  111 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i  111 (200)
                      +.++|+|+|++|+|||||+++|.++.+...+.++.+..+ ...+.+ ++..+.+.+||+||++++...+..+++.+|+++
T Consensus         2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i   79 (167)
T 1kao_A            2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY-RKEIEV-DSSPSVLEILDTAGTEQFASMRDLYIKNGQGFI   79 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEE-TTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeE-EEEEEE-CCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence            468999999999999999999999887776666665444 444444 445578999999999988888899999999999


Q ss_pred             EEEeCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Q 028986          112 VVYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEV  190 (200)
Q Consensus       112 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~  190 (200)
                      +|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+...+++..++..+++..++++++++||+++.|++++|++
T Consensus        80 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  159 (167)
T 1kao_A           80 LVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAE  159 (167)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHH
Confidence            9999999999999999988876653 467999999999999777778888889999999999999999999999999999


Q ss_pred             HHHhhcc
Q 028986          191 LITCTSS  197 (200)
Q Consensus       191 i~~~~~~  197 (200)
                      |.+.+.+
T Consensus       160 l~~~~~~  166 (167)
T 1kao_A          160 IVRQMNY  166 (167)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhh
Confidence            9998764

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=100.00  E-value=3e-32  Score=192.89  Aligned_cols=165  Identities=27%  Similarity=0.563  Sum_probs=139.7

Q ss_pred             CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccE
Q 028986           30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAV  109 (200)
Q Consensus        30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~  109 (200)
                      ....++|+|+|++|||||||+++|.+..+...+.++.+..+. ..+.+ ++..+.+.+||+||++.+...+..+++.+|+
T Consensus         4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   81 (184)
T 1m7b_A            4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEI-DTQRIELSLWDTSGSPYYDNVRPLSYPDSDA   81 (184)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEC-SSCEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred             CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEEE-CCEEEEEEEEECCCChhhhhhHHhhcCCCcE
Confidence            356799999999999999999999998887777777766553 34444 4455899999999999999999999999999


Q ss_pred             EEEEEeCCCHHhHHHH-HHHHHHHHHcCCCCCeEEEEEeCCCCCCC------------CcCCHHHHHHHHHHcC-CeEEE
Q 028986          110 AVVVYDITSPDSFNKA-QYWVKELQKHGSPDIVMALVGNKADLHEK------------REVPAQDGIEYAEKNG-MFFIE  175 (200)
Q Consensus       110 ~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~  175 (200)
                      +++|||++++.+++.+ ..|+..+... ..+.|+++|+||+|+...            +.+..+++.++++.++ +++++
T Consensus        82 ~i~v~d~~~~~s~~~~~~~~~~~i~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e  160 (184)
T 1m7b_A           82 VLICFDISRPETLDSVLKKWKGEIQEF-CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIE  160 (184)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHH-CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHH-CCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEE
Confidence            9999999999999988 7898888776 357999999999999642            4577888899998887 68999


Q ss_pred             ecCC-CCCCHHHHHHHHHHhhcc
Q 028986          176 TSAK-TADNINQLFEVLITCTSS  197 (200)
Q Consensus       176 ~S~~-~~~~i~~~~~~i~~~~~~  197 (200)
                      +||+ ++.|++++|++|.+.+.+
T Consensus       161 ~Sa~~~~~gi~~l~~~i~~~~l~  183 (184)
T 1m7b_A          161 CSALQSENSVRDIFHVATLACVN  183 (184)
T ss_dssp             CBTTTBHHHHHHHHHHHHHHHHT
T ss_pred             eeecCCCcCHHHHHHHHHHHHhc
Confidence            9999 689999999999988754

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=100.00  E-value=3.8e-32  Score=195.64  Aligned_cols=165  Identities=27%  Similarity=0.569  Sum_probs=139.8

Q ss_pred             CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccE
Q 028986           30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAV  109 (200)
Q Consensus        30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~  109 (200)
                      ....+||+|+|++|||||||+++|.+..+...+.++.+..+ ...+.+ ++..+.+.+||+||++.+...+..+++.+|+
T Consensus        25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~  102 (205)
T 1gwn_A           25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEI-DTQRIELSLWDTSGSPYYDNVRPLSYPDSDA  102 (205)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEES-SSSEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEE-CCEEEEEEEEeCCCcHhhhHHHHhhccCCCE
Confidence            45689999999999999999999999988777777776665 333444 4555899999999999999999999999999


Q ss_pred             EEEEEeCCCHHhHHHH-HHHHHHHHHcCCCCCeEEEEEeCCCCCCC------------CcCCHHHHHHHHHHcC-CeEEE
Q 028986          110 AVVVYDITSPDSFNKA-QYWVKELQKHGSPDIVMALVGNKADLHEK------------REVPAQDGIEYAEKNG-MFFIE  175 (200)
Q Consensus       110 ~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~  175 (200)
                      +|+|||++++.+++.+ ..|+..+... ..+.|+++|+||+|+...            +.+..+++.++++.++ +++++
T Consensus       103 ~ilv~D~~~~~s~~~~~~~~~~~i~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e  181 (205)
T 1gwn_A          103 VLICFDISRPETLDSVLKKWKGEIQEF-CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIE  181 (205)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHH-CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHH-CCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEE
Confidence            9999999999999988 7898888776 357999999999999642            4577888899998887 68999


Q ss_pred             ecCC-CCCCHHHHHHHHHHhhcc
Q 028986          176 TSAK-TADNINQLFEVLITCTSS  197 (200)
Q Consensus       176 ~S~~-~~~~i~~~~~~i~~~~~~  197 (200)
                      +||+ ++.|++++|++|++.+.+
T Consensus       182 ~SAk~~~~gv~~lf~~l~~~~l~  204 (205)
T 1gwn_A          182 CSALQSENSVRDIFHVATLACVN  204 (205)
T ss_dssp             CCTTTCHHHHHHHHHHHHHHHHH
T ss_pred             eeeccCCcCHHHHHHHHHHHHhh
Confidence            9999 689999999999988754

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.9e-32  Score=195.75  Aligned_cols=166  Identities=34%  Similarity=0.454  Sum_probs=141.9

Q ss_pred             CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccE
Q 028986           30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAV  109 (200)
Q Consensus        30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~  109 (200)
                      ....++|+|+|++|+|||||+++|++..+...+.++.+..+ ...+.+ ++..+.+.+||+||++. ...+..+++.+|+
T Consensus        25 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~  101 (196)
T 2atv_A           25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATI-DDEVVSMEILDTAGQED-TIQREGHMRWGEG  101 (196)
T ss_dssp             --CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEE-TTEEEEEEEEECCCCCC-CHHHHHHHHHCSE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEE-CCEEEEEEEEECCCCCc-ccchhhhhccCCE
Confidence            35679999999999999999999999988777777776555 333444 45558899999999887 6777888999999


Q ss_pred             EEEEEeCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCC-CHHHH
Q 028986          110 AVVVYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTAD-NINQL  187 (200)
Q Consensus       110 ~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~-~i~~~  187 (200)
                      +++|||++++.+++.+..|+..+.... ..++|+++|+||+|+...+++..+++.+++..++++++++||+++. |++++
T Consensus       102 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l  181 (196)
T 2atv_A          102 FVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEI  181 (196)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHH
Confidence            999999999999999999998887643 4689999999999998777788889999999999999999999999 99999


Q ss_pred             HHHHHHhhccc
Q 028986          188 FEVLITCTSSY  198 (200)
Q Consensus       188 ~~~i~~~~~~~  198 (200)
                      |++|++.+.+.
T Consensus       182 ~~~l~~~i~~~  192 (196)
T 2atv_A          182 FYELCREVRRR  192 (196)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhh
Confidence            99999988654

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=100.00  E-value=5.2e-32  Score=190.51  Aligned_cols=159  Identities=21%  Similarity=0.326  Sum_probs=131.5

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA  110 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  110 (200)
                      .+.+||+++|++|||||||+++|.+..+.. +.++.+..+ ...+.+ ++..+.+.+||++|+++     ..+++++|++
T Consensus         5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~   76 (178)
T 2iwr_A            5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLV-DGQTHLVLIREEAGAPD-----AKFSGWADAV   76 (178)
T ss_dssp             CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE-EEEEEE-TTEEEEEEEEECSSSCC-----HHHHHHCSEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE-EEEEEE-CCEEEEEEEEECCCCch-----hHHHHhCCEE
Confidence            467999999999999999999999988876 556666444 444555 45558899999999875     4567889999


Q ss_pred             EEEEeCCCHHhHHHHHHHHHHHHHc---CCCCCeEEEEEeCCCCC--CCCcCCHHHHHHHHHHc-CCeEEEecCCCCCCH
Q 028986          111 VVVYDITSPDSFNKAQYWVKELQKH---GSPDIVMALVGNKADLH--EKREVPAQDGIEYAEKN-GMFFIETSAKTADNI  184 (200)
Q Consensus       111 i~v~d~~~~~s~~~~~~~~~~i~~~---~~~~~p~iiv~nK~D~~--~~~~~~~~~~~~~~~~~-~~~~~~~S~~~~~~i  184 (200)
                      |+|||++++.+++.+..|+..+...   ...++|+++|+||+|+.  ..+.+..+++.+++... +++++++||++|.|+
T Consensus        77 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  156 (178)
T 2iwr_A           77 IFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNV  156 (178)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCH
Confidence            9999999999999999876665543   23689999999999993  45667888888888876 689999999999999


Q ss_pred             HHHHHHHHHhhcc
Q 028986          185 NQLFEVLITCTSS  197 (200)
Q Consensus       185 ~~~~~~i~~~~~~  197 (200)
                      +++|++|.+.+.+
T Consensus       157 ~~lf~~l~~~~~~  169 (178)
T 2iwr_A          157 DRVFQEVAQKVVT  169 (178)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988754

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2.3e-32  Score=190.86  Aligned_cols=165  Identities=31%  Similarity=0.457  Sum_probs=139.6

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEE
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAV  111 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i  111 (200)
                      ..++|+|+|++|+|||||+++|.+..+...+.++.+..+. ..... ++..+.+.+||+||++++...+..+++.+|+++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i   79 (172)
T 2erx_A            2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISC-DKSICTLQITDTTGSHQFPAMQRLSISKGHAFI   79 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE-EEEEE-TTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE-EEEEE-CCEEEEEEEEECCCchhhHHHHHHhcccCCEEE
Confidence            4689999999999999999999998876666666655543 22333 455578999999999988888888999999999


Q ss_pred             EEEeCCCHHhHHHHHHHHHHHHHcC--CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Q 028986          112 VVYDITSPDSFNKAQYWVKELQKHG--SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFE  189 (200)
Q Consensus       112 ~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~  189 (200)
                      +|+|++++.+++.+..|+..+.+..  ..+.|+++|+||+|+...+++..++...++..++++++++|++++.|++++|+
T Consensus        80 ~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  159 (172)
T 2erx_A           80 LVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQ  159 (172)
T ss_dssp             EEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHH
Confidence            9999999999999888888876643  25789999999999987777778888889999999999999999999999999


Q ss_pred             HHHHhhccc
Q 028986          190 VLITCTSSY  198 (200)
Q Consensus       190 ~i~~~~~~~  198 (200)
                      +|.+.+.++
T Consensus       160 ~l~~~~~~~  168 (172)
T 2erx_A          160 ELLNLEKRR  168 (172)
T ss_dssp             HHHHTCCSS
T ss_pred             HHHHHHhhh
Confidence            999988764

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=100.00  E-value=3.9e-32  Score=195.43  Aligned_cols=164  Identities=30%  Similarity=0.596  Sum_probs=135.7

Q ss_pred             CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCcc
Q 028986           29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAA  108 (200)
Q Consensus        29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d  108 (200)
                      ...+.+||+|+|++|||||||+++|++..+...+.++.+..+ ...+.. ++..+.+.+||+||++.+...+..+++.+|
T Consensus        26 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d  103 (204)
T 4gzl_A           26 FQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMV-DGKPVNLGLWDTAGLEDYDRLRPLSYPQTD  103 (204)
T ss_dssp             ----CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEE-EEEEEC-C-CEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred             hcCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeeccee-EEEEEE-CCEEEEEEEEECCCchhhHHHHHHHhccCC
Confidence            346789999999999999999999999887766666665433 333444 455688999999999999999999999999


Q ss_pred             EEEEEEeCCCHHhHHHHH-HHHHHHHHcCCCCCeEEEEEeCCCCCCCCc------------CCHHHHHHHHHHcCC-eEE
Q 028986          109 VAVVVYDITSPDSFNKAQ-YWVKELQKHGSPDIVMALVGNKADLHEKRE------------VPAQDGIEYAEKNGM-FFI  174 (200)
Q Consensus       109 ~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~------------~~~~~~~~~~~~~~~-~~~  174 (200)
                      ++++|||++++.+++.+. .|+..+.... .+.|+++|+||+|+.....            +..++...++...++ +++
T Consensus       104 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  182 (204)
T 4gzl_A          104 VFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYL  182 (204)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEE
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEE
Confidence            999999999999999886 8888888774 6899999999999966532            677888889998886 599


Q ss_pred             EecCCCCCCHHHHHHHHHHhh
Q 028986          175 ETSAKTADNINQLFEVLITCT  195 (200)
Q Consensus       175 ~~S~~~~~~i~~~~~~i~~~~  195 (200)
                      ++||++|.|++++|++|.+.+
T Consensus       183 ~~SA~~g~gi~~l~~~l~~~~  203 (204)
T 4gzl_A          183 ECSALTQRGLKTVFDEAIRAV  203 (204)
T ss_dssp             ECCTTTCTTHHHHHHHHHHTT
T ss_pred             EeeCCCCCCHHHHHHHHHHHh
Confidence            999999999999999998865

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=100.00  E-value=6.7e-32  Score=193.57  Aligned_cols=167  Identities=32%  Similarity=0.569  Sum_probs=133.8

Q ss_pred             CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCcc
Q 028986           29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAA  108 (200)
Q Consensus        29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d  108 (200)
                      .....++|+|+|++|||||||+++|.+..+...+.++.+..+ ...+.. ++..+.+.+||+||++++...+..+++++|
T Consensus        16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   93 (201)
T 2q3h_A           16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSV-DGRPVRLQLCDTAGQDEFDKLRPLCYTNTD   93 (201)
T ss_dssp             ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEE-TTEEEEEEEEECCCSTTCSSSGGGGGTTCS
T ss_pred             CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEE-CCEEEEEEEEECCCCHHHHHHhHhhcCCCc
Confidence            456789999999999999999999999887766666666554 333444 455588999999999999999999999999


Q ss_pred             EEEEEEeCCCHHhHHHHH-HHHHHHHHcCCCCCeEEEEEeCCCCCC------------CCcCCHHHHHHHHHHcCC-eEE
Q 028986          109 VAVVVYDITSPDSFNKAQ-YWVKELQKHGSPDIVMALVGNKADLHE------------KREVPAQDGIEYAEKNGM-FFI  174 (200)
Q Consensus       109 ~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~  174 (200)
                      ++++|||++++.+++.+. .|+..+.... .++|+++|+||+|+..            .+.+..+++..++..+++ +++
T Consensus        94 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  172 (201)
T 2q3h_A           94 IFLLCFSVVSPSSFQNVSEKWVPEIRCHC-PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYI  172 (201)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHHHHHC-SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEE
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEE
Confidence            999999999999999986 7998888763 4899999999999965            355677888999988887 899


Q ss_pred             EecCCCCCCHHHHHHHHHHhhccc
Q 028986          175 ETSAKTADNINQLFEVLITCTSSY  198 (200)
Q Consensus       175 ~~S~~~~~~i~~~~~~i~~~~~~~  198 (200)
                      ++||+++.|++++|++|++.+.+.
T Consensus       173 ~~Sa~~g~gi~~l~~~l~~~~~~~  196 (201)
T 2q3h_A          173 ECSALTQKNLKEVFDAAIVAGIQY  196 (201)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             EEecCCCCCHHHHHHHHHHHHhcc
Confidence            999999999999999999887653

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=100.00  E-value=1.5e-31  Score=189.68  Aligned_cols=164  Identities=32%  Similarity=0.539  Sum_probs=138.0

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA  110 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  110 (200)
                      ...++|+|+|++|||||||+++|.+..+...+.++....+ ...+.. ++..+.+.+||+||++.+...+..++..+|++
T Consensus         2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   79 (189)
T 4dsu_A            2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVI-DGETCLLDILDTAGQEEYSAMRDQYMRTGEGF   79 (189)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEE-EEEEEE-TTEEEEEEEEECCCC---CTTHHHHHHHCSEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheE-EEEEEE-CCcEEEEEEEECCCcHHHHHHHHHHHhcCCEE
Confidence            4578999999999999999999999887766666664433 333444 45558899999999999999999999999999


Q ss_pred             EEEEeCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Q 028986          111 VVVYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFE  189 (200)
Q Consensus       111 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~  189 (200)
                      ++|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.. .....++...++..++++++++||++|.|++++|+
T Consensus        80 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~  158 (189)
T 4dsu_A           80 LCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFY  158 (189)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSS-CSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcc-cccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence            99999999999999999999887743 56899999999999864 45677888999999999999999999999999999


Q ss_pred             HHHHhhcc
Q 028986          190 VLITCTSS  197 (200)
Q Consensus       190 ~i~~~~~~  197 (200)
                      +|.+.+.+
T Consensus       159 ~l~~~~~~  166 (189)
T 4dsu_A          159 TLVREIRK  166 (189)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998764

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=100.00  E-value=7e-32  Score=195.49  Aligned_cols=166  Identities=33%  Similarity=0.591  Sum_probs=121.4

Q ss_pred             CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccE
Q 028986           30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAV  109 (200)
Q Consensus        30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~  109 (200)
                      ....++|+|+|++|||||||+++|++..+...+.++....+ ...+.+ ++..+.+.+||+||++.+...+..+++.+|+
T Consensus        31 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~  108 (214)
T 2j1l_A           31 GVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQV-KGKPVHLHIWDTAGQDDYDRLRPLFYPDASV  108 (214)
T ss_dssp             -CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEE-TTEEEEEEEEEC---------------CEEE
T ss_pred             CcceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEE-CCEEEEEEEEECCCchhhhHHHHHHhccCCE
Confidence            34679999999999999999999999887666666665444 333444 4555889999999999999999999999999


Q ss_pred             EEEEEeCCCHHhHHHHH-HHHHHHHHcCCCCCeEEEEEeCCCCCCCC------------cCCHHHHHHHHHHcCC-eEEE
Q 028986          110 AVVVYDITSPDSFNKAQ-YWVKELQKHGSPDIVMALVGNKADLHEKR------------EVPAQDGIEYAEKNGM-FFIE  175 (200)
Q Consensus       110 ~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~  175 (200)
                      +++|||++++.+++.+. .|+..+... ..++|+++|+||+|+....            .+..+++.+++..+++ ++++
T Consensus       109 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  187 (214)
T 2j1l_A          109 LLLCFDVTSPNSFDNIFNRWYPEVNHF-CKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLE  187 (214)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHH-CSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEE
Confidence            99999999999999885 798888776 3578999999999997642            5677888899999987 8999


Q ss_pred             ecCCCCCCHHHHHHHHHHhhccc
Q 028986          176 TSAKTADNINQLFEVLITCTSSY  198 (200)
Q Consensus       176 ~S~~~~~~i~~~~~~i~~~~~~~  198 (200)
                      +||++|.|++++|++|.+.+.+.
T Consensus       188 ~SA~~g~gi~el~~~l~~~~~~~  210 (214)
T 2j1l_A          188 CSARLHDNVHAVFQEAAEVALSS  210 (214)
T ss_dssp             CBTTTTBSHHHHHHHHHHHHHHC
T ss_pred             ecCCCCCCHHHHHHHHHHHHHHh
Confidence            99999999999999999988654

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=100.00  E-value=1.9e-31  Score=188.68  Aligned_cols=165  Identities=30%  Similarity=0.585  Sum_probs=140.4

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA  110 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  110 (200)
                      ...++|+++|++|+|||||+++|.+..+...+.++.+..+ ...+.+ ++..+.+.+||+||++.+...+..+++.+|++
T Consensus         3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   80 (186)
T 1mh1_A            3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMV-DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVS   80 (186)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEE-TTEEEEEEEECCCCSGGGTTTGGGGCTTCSEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEE-CCEEEEEEEEECCCCHhHHHHHHHhccCCcEE
Confidence            4578999999999999999999999887766666665554 333444 45568899999999999999999999999999


Q ss_pred             EEEEeCCCHHhHHHHH-HHHHHHHHcCCCCCeEEEEEeCCCCCCC------------CcCCHHHHHHHHHHcCC-eEEEe
Q 028986          111 VVVYDITSPDSFNKAQ-YWVKELQKHGSPDIVMALVGNKADLHEK------------REVPAQDGIEYAEKNGM-FFIET  176 (200)
Q Consensus       111 i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~  176 (200)
                      ++|||++++.+++.+. .|+..+.... .+.|+++|+||+|+...            +.+..++...++..+++ +++++
T Consensus        81 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  159 (186)
T 1mh1_A           81 LICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC  159 (186)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHS-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred             EEEEECCChhhHHHHHHHHHHHHHHhC-CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEe
Confidence            9999999999999886 7888887763 38999999999998653            45677888889998887 99999


Q ss_pred             cCCCCCCHHHHHHHHHHhhccc
Q 028986          177 SAKTADNINQLFEVLITCTSSY  198 (200)
Q Consensus       177 S~~~~~~i~~~~~~i~~~~~~~  198 (200)
                      ||++|.|++++|++|.+.+.+.
T Consensus       160 Sa~~g~gi~~l~~~l~~~~~~~  181 (186)
T 1mh1_A          160 SALTQRGLKTVFDEAIRAVLCP  181 (186)
T ss_dssp             CTTTCTTHHHHHHHHHHHHSCC
T ss_pred             cCCCccCHHHHHHHHHHHHhcc
Confidence            9999999999999999988653

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=100.00  E-value=6.4e-32  Score=195.25  Aligned_cols=165  Identities=33%  Similarity=0.630  Sum_probs=139.3

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA  110 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  110 (200)
                      ...++|+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+ ++..+.+.+||+||++.+...+..+++++|++
T Consensus         7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   84 (212)
T 2j0v_A            7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAV-DGQIVNLGLWDTAGQEDYSRLRPLSYRGADIF   84 (212)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEEC-SSCEEEEEEECCCCCCCCCC--CGGGTTCSEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEE-CCEEEEEEEEECCCcHHHHHHHHhhccCCCEE
Confidence            4679999999999999999999999888777777776555 333444 45568999999999999999999999999999


Q ss_pred             EEEEeCCCHHhHHHHH-HHHHHHHHcCCCCCeEEEEEeCCCCCCCCc--------CCHHHHHHHHHHcCC-eEEEecCCC
Q 028986          111 VVVYDITSPDSFNKAQ-YWVKELQKHGSPDIVMALVGNKADLHEKRE--------VPAQDGIEYAEKNGM-FFIETSAKT  180 (200)
Q Consensus       111 i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~--------~~~~~~~~~~~~~~~-~~~~~S~~~  180 (200)
                      |+|||++++.+++.+. .|+..+.... .+.|+++|+||+|+.....        +..+++.+++..+++ +++++||++
T Consensus        85 ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~  163 (212)
T 2j0v_A           85 VLAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKT  163 (212)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTT
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCC
Confidence            9999999999999886 8999888763 4899999999999866543        367888889988886 899999999


Q ss_pred             CCCHHHHHHHHHHhhccc
Q 028986          181 ADNINQLFEVLITCTSSY  198 (200)
Q Consensus       181 ~~~i~~~~~~i~~~~~~~  198 (200)
                      +.|++++|++|++.+.+.
T Consensus       164 g~gi~~l~~~l~~~~~~~  181 (212)
T 2j0v_A          164 QQNVKAVFDTAIKVVLQP  181 (212)
T ss_dssp             CTTHHHHHHHHHHHHHCC
T ss_pred             CCCHHHHHHHHHHHHhhh
Confidence            999999999999987653

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2.7e-31  Score=191.37  Aligned_cols=164  Identities=33%  Similarity=0.618  Sum_probs=135.2

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA  110 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  110 (200)
                      ...+||+|+|++|||||||+++|.+..+...+.++.+..+.. .+.. ++..+.+.+||+||++++...+..+++.+|++
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~  100 (207)
T 2fv8_A           23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVA-DIEV-DGKQVELALWDTAGQEDYDRLRPLSYPDTDVI  100 (207)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEE-EEEE-TTEEEEEEEEECTTCTTCTTTGGGGCTTCCEE
T ss_pred             ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEE-EEEE-CCEEEEEEEEECCCcHHHHHHHHhhcCCCCEE
Confidence            467899999999999999999999988877666666665533 3444 45558999999999999999999999999999


Q ss_pred             EEEEeCCCHHhHHHH-HHHHHHHHHcCCCCCeEEEEEeCCCCCCC------------CcCCHHHHHHHHHHcCC-eEEEe
Q 028986          111 VVVYDITSPDSFNKA-QYWVKELQKHGSPDIVMALVGNKADLHEK------------REVPAQDGIEYAEKNGM-FFIET  176 (200)
Q Consensus       111 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~  176 (200)
                      ++|||++++.+++.+ ..|+..+... ..+.|+++|+||+|+...            +.+..++...++...++ +++++
T Consensus       101 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  179 (207)
T 2fv8_A          101 LMCFSVDSPDSLENIPEKWVPEVKHF-CPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLEC  179 (207)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHH-STTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEe
Confidence            999999999999888 7888888775 357899999999999654            45677788889988888 89999


Q ss_pred             cCCCCCCHHHHHHHHHHhhcc
Q 028986          177 SAKTADNINQLFEVLITCTSS  197 (200)
Q Consensus       177 S~~~~~~i~~~~~~i~~~~~~  197 (200)
                      ||+++.|++++|++|.+.+.+
T Consensus       180 SA~~g~gi~el~~~l~~~i~~  200 (207)
T 2fv8_A          180 SAKTKEGVREVFETATRAALQ  200 (207)
T ss_dssp             CTTTCTTHHHHHHHHHHHHHS
T ss_pred             eCCCCCCHHHHHHHHHHHHHH
Confidence            999999999999999998754

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=100.00  E-value=4.8e-31  Score=182.93  Aligned_cols=162  Identities=32%  Similarity=0.547  Sum_probs=138.3

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEE
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVV  112 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~  112 (200)
                      .++|+++|++|+|||||+++|.+..+...+.++.+..+ ...+.. ++..+.+.+||+||++++...+..++..+|++++
T Consensus         3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   80 (166)
T 2ce2_X            3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVI-DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   80 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEE-TTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEE-CCEEEEEEEEECCCchhhhHHHHHhhccCCEEEE
Confidence            57999999999999999999999887766666655444 333444 4455889999999999888888889999999999


Q ss_pred             EEeCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Q 028986          113 VYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVL  191 (200)
Q Consensus       113 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i  191 (200)
                      |+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.. +....++..+++..++++++++|++++.|+++++++|
T Consensus        81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  159 (166)
T 2ce2_X           81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL  159 (166)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh-cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence            999999999999999998887654 34799999999999876 4566788889999999999999999999999999999


Q ss_pred             HHhhcc
Q 028986          192 ITCTSS  197 (200)
Q Consensus       192 ~~~~~~  197 (200)
                      .+.+.+
T Consensus       160 ~~~~~~  165 (166)
T 2ce2_X          160 VREIRQ  165 (166)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            998765

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.98  E-value=2.7e-31  Score=189.97  Aligned_cols=165  Identities=32%  Similarity=0.471  Sum_probs=139.4

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA  110 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  110 (200)
                      ...++|+|+|++|||||||+++|.+..+...+.++.+..+. ..+.. ++..+.+.+||+||++.+...+..++..+|++
T Consensus         6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   83 (199)
T 2gf0_A            6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISC-DKSVCTLQITDTTGSHQFPAMQRLSISKGHAF   83 (199)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEE-TTEEEEEEEEECCGGGSCHHHHHHHHHHCSEE
T ss_pred             CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEE-CCEEEEEEEEeCCChHHhHHHHHHhhccCCEE
Confidence            45789999999999999999999998877666666665443 23333 45568999999999998888888999999999


Q ss_pred             EEEEeCCCHHhHHHHHHHHHHHHHcC--CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Q 028986          111 VVVYDITSPDSFNKAQYWVKELQKHG--SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF  188 (200)
Q Consensus       111 i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~  188 (200)
                      ++|||++++.+++.+..|+..+....  ..+.|+++|+||+|+.. +.+..++...++..++++++++||+++.|++++|
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  162 (199)
T 2gf0_A           84 ILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKELF  162 (199)
T ss_dssp             EEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS-CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc-cccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHH
Confidence            99999999999998888887776643  24789999999999965 4566788888999999999999999999999999


Q ss_pred             HHHHHhhccc
Q 028986          189 EVLITCTSSY  198 (200)
Q Consensus       189 ~~i~~~~~~~  198 (200)
                      ++|.+.+.++
T Consensus       163 ~~l~~~~~~~  172 (199)
T 2gf0_A          163 QELLTLETRR  172 (199)
T ss_dssp             HHHHHHCSSS
T ss_pred             HHHHHHHhhh
Confidence            9999988654

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.98  E-value=3.3e-32  Score=194.29  Aligned_cols=168  Identities=18%  Similarity=0.213  Sum_probs=133.3

Q ss_pred             CCCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCC----------CccccceeEEEEEEEecCCcEEEEEEEeCCChhhhh
Q 028986           28 DAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPT----------SKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYA   97 (200)
Q Consensus        28 ~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~   97 (200)
                      ...+..+||+|+|++|||||||++.+.+......          ..++.+.++....+...++..+.+.+|||||++.+.
T Consensus         9 ~~~~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~   88 (198)
T 3t1o_A            9 ANREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN   88 (198)
T ss_dssp             TTTEEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS
T ss_pred             hccccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH
Confidence            3457789999999999999999987776432211          123333333333331234556899999999999999


Q ss_pred             hcccccccCccEEEEEEeCC------CHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCC
Q 028986           98 ALAPLYYRGAAVAVVVYDIT------SPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGM  171 (200)
Q Consensus        98 ~~~~~~~~~~d~~i~v~d~~------~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~  171 (200)
                      ..+..+++++|++|+|||++      +..+++.+..|+..+. ....++|+++|+||+|+...  ...+++.+++..+++
T Consensus        89 ~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~-~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~  165 (198)
T 3t1o_A           89 ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG-LTLDDVPIVIQVNKRDLPDA--LPVEMVRAVVDPEGK  165 (198)
T ss_dssp             HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT-CCTTSSCEEEEEECTTSTTC--CCHHHHHHHHCTTCC
T ss_pred             HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc-cccCCCCEEEEEEchhcccc--cCHHHHHHHHHhcCC
Confidence            99999999999999999999      5567777778877773 23578999999999998664  678888999999999


Q ss_pred             -eEEEecCCCCCCHHHHHHHHHHhhccc
Q 028986          172 -FFIETSAKTADNINQLFEVLITCTSSY  198 (200)
Q Consensus       172 -~~~~~S~~~~~~i~~~~~~i~~~~~~~  198 (200)
                       +++++||+++.|++++|++|.+.+.++
T Consensus       166 ~~~~~~Sa~~~~gv~~l~~~l~~~i~~~  193 (198)
T 3t1o_A          166 FPVLEAVATEGKGVFETLKEVSRLVLAR  193 (198)
T ss_dssp             SCEEECBGGGTBTHHHHHHHHHHHHHHH
T ss_pred             ceEEEEecCCCcCHHHHHHHHHHHHHHH
Confidence             999999999999999999999988654

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.98  E-value=3.9e-32  Score=191.66  Aligned_cols=163  Identities=32%  Similarity=0.620  Sum_probs=125.5

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA  110 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  110 (200)
                      .+.+||+|+|++|+|||||+++|.+..+...+.++.+..+. ..+.. ++..+.+.+||+||++++...+..+++++|++
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   83 (182)
T 3bwd_D            6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVV-NGATVNLGLWDTAGQEDYNRLRPLSYRGADVF   83 (182)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC--------CEEECCCC-CTTTTTGGGGGTTCSEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEE-CCEEEEEEEEECCCChhhhhhHHhhccCCCEE
Confidence            45789999999999999999999998876666665554332 11222 33447888999999999999999999999999


Q ss_pred             EEEEeCCCHHhHHHHH-HHHHHHHHcCCCCCeEEEEEeCCCCCCCCc----------CCHHHHHHHHHHcCC-eEEEecC
Q 028986          111 VVVYDITSPDSFNKAQ-YWVKELQKHGSPDIVMALVGNKADLHEKRE----------VPAQDGIEYAEKNGM-FFIETSA  178 (200)
Q Consensus       111 i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~S~  178 (200)
                      ++|||++++.+++.+. .|+..+.... .+.|+++|+||+|+...+.          +..+++.+++..+++ +++++||
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa  162 (182)
T 3bwd_D           84 ILAFSLISKASYENVSKKWIPELKHYA-PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSS  162 (182)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEEC
Confidence            9999999999999886 7988888763 4899999999999866543          467788889988886 8999999


Q ss_pred             CCCCCHHHHHHHHHHhhc
Q 028986          179 KTADNINQLFEVLITCTS  196 (200)
Q Consensus       179 ~~~~~i~~~~~~i~~~~~  196 (200)
                      +++.|++++|++|.+.+.
T Consensus       163 ~~~~gi~~l~~~l~~~i~  180 (182)
T 3bwd_D          163 KSQENVKGVFDAAIRVVL  180 (182)
T ss_dssp             TTCTTHHHHHHHHHHHHS
T ss_pred             CCCCCHHHHHHHHHHHHh
Confidence            999999999999998764

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.98  E-value=1.5e-31  Score=191.21  Aligned_cols=165  Identities=18%  Similarity=0.270  Sum_probs=127.4

Q ss_pred             CCCCCceeeEEEEcCCCCcHHHHHHHHHcCCCCC-CCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhccccccc
Q 028986           27 SDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDP-TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYR  105 (200)
Q Consensus        27 ~~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~  105 (200)
                      ..+.....+|+|+|++|||||||+++|++..+.. .+.++.+....  .+.   ...+.+.+|||||++.+...+..+++
T Consensus        11 ~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~--~~~---~~~~~~~i~Dt~G~~~~~~~~~~~~~   85 (199)
T 4bas_A           11 MGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVE--TFE---KGRVAFTVFDMGGAKKFRGLWETYYD   85 (199)
T ss_dssp             -----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEE--EEE---ETTEEEEEEEECCSGGGGGGGGGGCT
T ss_pred             ccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEE--EEE---eCCEEEEEEECCCCHhHHHHHHHHHh
Confidence            4456788899999999999999999999998877 66666664332  232   22378999999999999999999999


Q ss_pred             CccEEEEEEeCCCHHhHHHHHHHHHHHHHcCC--------CCCeEEEEEeCCCCCCCCcCCHHHHHHH------HHHcCC
Q 028986          106 GAAVAVVVYDITSPDSFNKAQYWVKELQKHGS--------PDIVMALVGNKADLHEKREVPAQDGIEY------AEKNGM  171 (200)
Q Consensus       106 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--------~~~p~iiv~nK~D~~~~~~~~~~~~~~~------~~~~~~  171 (200)
                      .+|++|+|||++++.+++.+..|+..+.....        .++|+++|+||+|+.....  .++..+.      +...++
T Consensus        86 ~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~  163 (199)
T 4bas_A           86 NIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKT--AAELVEILDLTTLMGDHPF  163 (199)
T ss_dssp             TCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCC--HHHHHHHHTHHHHHTTSCE
T ss_pred             cCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCC--HHHHHHHhcchhhccCCee
Confidence            99999999999999999999888887765411        3789999999999976532  2222211      134677


Q ss_pred             eEEEecCCCCCCHHHHHHHHHHhhccc
Q 028986          172 FFIETSAKTADNINQLFEVLITCTSSY  198 (200)
Q Consensus       172 ~~~~~S~~~~~~i~~~~~~i~~~~~~~  198 (200)
                      +++++||+++.|++++|++|.+.+.++
T Consensus       164 ~~~~~Sa~~g~gv~~l~~~l~~~~~~~  190 (199)
T 4bas_A          164 VIFASNGLKGTGVHEGFSWLQETASRQ  190 (199)
T ss_dssp             EEEECBTTTTBTHHHHHHHHHHHHHHH
T ss_pred             EEEEeeCCCccCHHHHHHHHHHHHHHH
Confidence            899999999999999999999988654

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.98  E-value=8.4e-32  Score=191.27  Aligned_cols=164  Identities=25%  Similarity=0.351  Sum_probs=129.3

Q ss_pred             CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCcc
Q 028986           29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAA  108 (200)
Q Consensus        29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d  108 (200)
                      ..+..++|+|+|++|+|||||+++|++..+...+.++.+..+..  +..   ..+.+.+||+||++++...+..+++.+|
T Consensus        18 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~---~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   92 (188)
T 1zd9_A           18 GSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--ITK---GNVTIKLWDIGGQPRFRSMWERYCRGVS   92 (188)
T ss_dssp             -CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--EEE---TTEEEEEEEECCSHHHHTTHHHHHTTCS
T ss_pred             CCCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE--EEe---CCEEEEEEECCCCHhHHHHHHHHHccCC
Confidence            34668999999999999999999999988876666777666543  222   2378999999999999999999999999


Q ss_pred             EEEEEEeCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHH-----HcCCeEEEecCCCCC
Q 028986          109 VAVVVYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAE-----KNGMFFIETSAKTAD  182 (200)
Q Consensus       109 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~  182 (200)
                      ++|+|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+....  ..++..+...     ..+++++++||+++.
T Consensus        93 ~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~  170 (188)
T 1zd9_A           93 AIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL--DEKELIEKMNLSAIQDREICCYSISCKEKD  170 (188)
T ss_dssp             EEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCT
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCC--CHHHHHHHhChhhhccCCeeEEEEECCCCC
Confidence            9999999999999999988888776532 3679999999999996542  2223222211     234579999999999


Q ss_pred             CHHHHHHHHHHhhcccC
Q 028986          183 NINQLFEVLITCTSSYC  199 (200)
Q Consensus       183 ~i~~~~~~i~~~~~~~~  199 (200)
                      |++++|++|.+.+.++.
T Consensus       171 gv~~l~~~l~~~~~~~~  187 (188)
T 1zd9_A          171 NIDITLQWLIQHSKSRR  187 (188)
T ss_dssp             THHHHHHHHHHTCC---
T ss_pred             CHHHHHHHHHHHHHhhc
Confidence            99999999999887653

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.98  E-value=5.4e-32  Score=196.91  Aligned_cols=168  Identities=29%  Similarity=0.539  Sum_probs=142.5

Q ss_pred             CCCCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccC
Q 028986           27 SDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRG  106 (200)
Q Consensus        27 ~~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~  106 (200)
                      .......+||+|+|++|||||||+++|+.+.+...+.++.+.+........ ++..+.+.+||+||++.+...+..++++
T Consensus         9 ~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~   87 (221)
T 3gj0_A            9 QGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT-NRGPIKFNVWDTAGQEKFGGLRDGYYIQ   87 (221)
T ss_dssp             TTCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEE-TTEEEEEEEEEECSGGGTSCCCHHHHTT
T ss_pred             CCCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEeCCChHHHhHHHHHHHhc
Confidence            345567899999999999999999997776666666677777776666666 4445899999999999999999999999


Q ss_pred             ccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHH
Q 028986          107 AAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQ  186 (200)
Q Consensus       107 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~  186 (200)
                      +|++++|||++++.+++.+..|+..+... ..++|+++|+||+|+.....  ..+...++...+++++++||+++.|+++
T Consensus        88 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  164 (221)
T 3gj0_A           88 AQCAIIMFDVTSRVTYKNVPNWHRDLVRV-CENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEK  164 (221)
T ss_dssp             CCEEEEEEETTCHHHHHTHHHHHHHHHHH-STTCCEEEEEECTTSSSCSS--CGGGCCHHHHHTCEEEECBGGGTBTTTH
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHh-CCCCCEEEEEECCccccccc--cHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence            99999999999999999999999999877 35789999999999965443  2355677888899999999999999999


Q ss_pred             HHHHHHHhhccc
Q 028986          187 LFEVLITCTSSY  198 (200)
Q Consensus       187 ~~~~i~~~~~~~  198 (200)
                      +|++|.+.+.+.
T Consensus       165 l~~~l~~~l~~~  176 (221)
T 3gj0_A          165 PFLWLARKLIGD  176 (221)
T ss_dssp             HHHHHHHHHHTC
T ss_pred             HHHHHHHHHHhC
Confidence            999999987653

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.97  E-value=2.2e-30  Score=184.66  Aligned_cols=165  Identities=29%  Similarity=0.384  Sum_probs=131.1

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCC--CCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhh-hhhcccccccCc
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQ--FDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQER-YAALAPLYYRGA  107 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-~~~~~~~~~~~~  107 (200)
                      ...+||+|+|++|||||||+++|++..  +...+ ++.+.++....+.+ ++..+.+.+||++|.+. +...+..+++.+
T Consensus         4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~   81 (192)
T 2cjw_A            4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX-EVLGEDTYERTLMV-DGESATIILLDMWENKGENEWLHDHCMQVG   81 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEE-TTEEEEEEEECCCCC----CTTGGGHHHHC
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccc-cccceeEEEEEEEE-CCeEEEEEEEEeccCcchhhhHHHhhcccC
Confidence            456899999999999999999999633  23322 33455555555555 45568899999999765 445667778889


Q ss_pred             cEEEEEEeCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHH
Q 028986          108 AVAVVVYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQ  186 (200)
Q Consensus       108 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~  186 (200)
                      |++++|||++++.+++.+..|+..+.... ..++|+++|+||+|+...+.+..++...++..++++++++||++|.|+++
T Consensus        82 ~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~  161 (192)
T 2cjw_A           82 DAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKE  161 (192)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHH
Confidence            99999999999999999999988877643 45789999999999976667777888888888899999999999999999


Q ss_pred             HHHHHHHhhcc
Q 028986          187 LFEVLITCTSS  197 (200)
Q Consensus       187 ~~~~i~~~~~~  197 (200)
                      +|++|.+.+..
T Consensus       162 lf~~l~~~~~~  172 (192)
T 2cjw_A          162 LFEGIVRQVRL  172 (192)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999988753

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.97  E-value=3e-30  Score=183.42  Aligned_cols=163  Identities=19%  Similarity=0.262  Sum_probs=127.9

Q ss_pred             CCCceeeEEEEcCCCCcHHHHHHHHHcCC-CCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCc
Q 028986           29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQ-FDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGA  107 (200)
Q Consensus        29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~  107 (200)
                      ...+.++|+|+|++|+|||||+++|.+.. +...+.++.+  .....+.+.+   +.+.+||+||++.+...+..+++++
T Consensus        17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~~---~~~~l~Dt~G~~~~~~~~~~~~~~~   91 (190)
T 2h57_A           17 RGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS---LSFTVFDMSGQGRYRNLWEHYYKEG   91 (190)
T ss_dssp             ----CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECSS---CEEEEEEECCSTTTGGGGGGGGGGC
T ss_pred             CCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEECC---EEEEEEECCCCHHHHHHHHHHHhcC
Confidence            34567999999999999999999999876 4444555554  3334444432   6899999999999999999999999


Q ss_pred             cEEEEEEeCCCHHhHHHHHHHHHHHHHcCC---CCCeEEEEEeCCCCCCCCcCCHHHHHHHHH-----HcCCeEEEecCC
Q 028986          108 AVAVVVYDITSPDSFNKAQYWVKELQKHGS---PDIVMALVGNKADLHEKREVPAQDGIEYAE-----KNGMFFIETSAK  179 (200)
Q Consensus       108 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~  179 (200)
                      |++++|+|++++.+++.+..|+..+.....   .+.|+++|+||+|+...  ...+++.+.+.     ..+++++++||+
T Consensus        92 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  169 (190)
T 2h57_A           92 QAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA--VTSVKVSQLLCLENIKDKPWHICASDAI  169 (190)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTT
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccC--CCHHHHHHHhChhhccCCceEEEEccCC
Confidence            999999999999999999888888776543   58999999999999653  33555555553     235689999999


Q ss_pred             CCCCHHHHHHHHHHhhccc
Q 028986          180 TADNINQLFEVLITCTSSY  198 (200)
Q Consensus       180 ~~~~i~~~~~~i~~~~~~~  198 (200)
                      ++.|++++|++|.+.+.+.
T Consensus       170 ~~~gi~~l~~~l~~~i~~~  188 (190)
T 2h57_A          170 KGEGLQEGVDWLQDQIQTV  188 (190)
T ss_dssp             TTBTHHHHHHHHHHHC---
T ss_pred             CCcCHHHHHHHHHHHHHHh
Confidence            9999999999999988764

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.97  E-value=9e-31  Score=182.78  Aligned_cols=160  Identities=19%  Similarity=0.342  Sum_probs=126.3

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA  110 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  110 (200)
                      ...++|+|+|++|+|||||+++|.+..+.. +.++.+..  ...+.+.   ...+.+||+||++.+...+..+++.+|++
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~---~~~~~~~Dt~G~~~~~~~~~~~~~~~d~i   78 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGFN--VETVTYK---NLKFQVWDLGGLTSIRPYWRCYYSNTDAV   78 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEE--EEEEEET---TEEEEEEEECCCGGGGGGGGGGCTTCSEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCccc--eEEEEEC---CEEEEEEECCCChhhhHHHHHHhccCCEE
Confidence            456899999999999999999999887653 34444433  3334443   27899999999999999999999999999


Q ss_pred             EEEEeCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCcCCHHHHHHH-----HHHcCCeEEEecCCCCCCH
Q 028986          111 VVVYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEY-----AEKNGMFFIETSAKTADNI  184 (200)
Q Consensus       111 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~S~~~~~~i  184 (200)
                      ++|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.....  ..+....     +...+++++++||+++.|+
T Consensus        79 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  156 (171)
T 1upt_A           79 IYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT--SSEMANSLGLPALKDRKWQIFKTSATKGTGL  156 (171)
T ss_dssp             EEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTGGGCTTSCEEEEECCTTTCTTH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCC--HHHHHHHhCchhccCCceEEEECcCCCCcCH
Confidence            99999999999998888887765542 36899999999999976532  2222222     2234568999999999999


Q ss_pred             HHHHHHHHHhhccc
Q 028986          185 NQLFEVLITCTSSY  198 (200)
Q Consensus       185 ~~~~~~i~~~~~~~  198 (200)
                      +++|++|.+.+.++
T Consensus       157 ~~l~~~l~~~i~~~  170 (171)
T 1upt_A          157 DEAMEWLVETLKSR  170 (171)
T ss_dssp             HHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhhc
Confidence            99999999988653

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.97  E-value=7.7e-30  Score=180.65  Aligned_cols=161  Identities=21%  Similarity=0.250  Sum_probs=128.4

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA  110 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  110 (200)
                      ...++|+|+|++|||||||+++|.+.. ...+.++.+..  ...+.+.   ...+.+|||||++++...+..+++.+|++
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~--~~~~~~~---~~~~~~~Dt~G~~~~~~~~~~~~~~~d~i   89 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFN--IKTLEHR---GFKLNIWDVGGQKSLRSYWRNYFESTDGL   89 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEE--EEEEEET---TEEEEEEEECCSHHHHTTGGGGCTTCSEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccc--eEEEEEC---CEEEEEEECCCCHhHHHHHHHHhcCCCEE
Confidence            567899999999999999999999887 45555555533  3334442   27899999999999999999999999999


Q ss_pred             EEEEeCCCHHhHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHH-----HcCCeEEEecCCCCCCH
Q 028986          111 VVVYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAE-----KNGMFFIETSAKTADNI  184 (200)
Q Consensus       111 i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~i  184 (200)
                      ++|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.....  .++..+...     ..+++++++||+++.|+
T Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  167 (186)
T 1ksh_A           90 IWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALS--CNAIQEALELDSIRSHHWRIQGCSAVTGEDL  167 (186)
T ss_dssp             EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCC--HHHHHHHhChhhccCCceEEEEeeCCCCCCH
Confidence            9999999999999998888877654 246799999999999966432  333333322     24568999999999999


Q ss_pred             HHHHHHHHHhhcccC
Q 028986          185 NQLFEVLITCTSSYC  199 (200)
Q Consensus       185 ~~~~~~i~~~~~~~~  199 (200)
                      +++|++|.+.+.+.+
T Consensus       168 ~~l~~~l~~~i~~~~  182 (186)
T 1ksh_A          168 LPGIDWLLDDISSRV  182 (186)
T ss_dssp             HHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHHHHHhcc
Confidence            999999999987653

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.97  E-value=2.3e-29  Score=180.26  Aligned_cols=166  Identities=45%  Similarity=0.772  Sum_probs=143.0

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA  110 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  110 (200)
                      +..++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+ ++..+.+.+||++|++.+...+..+++.++++
T Consensus         3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~-~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~   81 (199)
T 2f9l_A            3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV-DGKTIKAQIWDTAGQERYRRITSAYYRGAVGA   81 (199)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEE-TTEEEEEEEEECSSGGGTTCCCHHHHTTCSEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEECCCchhhhhhhHHHHhcCCEE
Confidence            45789999999999999999999999887777777777766666666 45558899999999998888888889999999


Q ss_pred             EEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Q 028986          111 VVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEV  190 (200)
Q Consensus       111 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~  190 (200)
                      ++|+|+.+..+++.+..|+..+........|+++|+||+|+...+....+++..++...++.++++|++++.+++++|++
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~  161 (199)
T 2f9l_A           82 LLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKN  161 (199)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            99999999999998888988887665567899999999999776777788889999999999999999999999999999


Q ss_pred             HHHhhcc
Q 028986          191 LITCTSS  197 (200)
Q Consensus       191 i~~~~~~  197 (200)
                      |.+.+.+
T Consensus       162 l~~~~~~  168 (199)
T 2f9l_A          162 ILTEIYR  168 (199)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988754

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.97  E-value=4.3e-31  Score=183.30  Aligned_cols=157  Identities=19%  Similarity=0.343  Sum_probs=121.2

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV  113 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v  113 (200)
                      +||+++|++|+|||||+++|.+..+.. +.++.+..  ...+...   .+.+.+||+||++.+...+..+++++|++++|
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~---~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v   74 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN--VETVEYK---NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV   74 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCC--EEEEECS---SCEEEEEECCCCGGGHHHHHHHTTTCSEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCcee--EEEEEEC---CEEEEEEEcCCChhhHHHHHHHhccCCEEEEE
Confidence            589999999999999999999877654 34455532  2233332   26899999999999999999999999999999


Q ss_pred             EeCCCHHhHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHH-----HcCCeEEEecCCCCCCHHHH
Q 028986          114 YDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAE-----KNGMFFIETSAKTADNINQL  187 (200)
Q Consensus       114 ~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~i~~~  187 (200)
                      +|++++.+++.+..|+..+... ...+.|+++|+||+|+....  ...+......     ..+++++++||+++.|++++
T Consensus        75 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  152 (164)
T 1r8s_A           75 VDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEG  152 (164)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCC--CHHHHHHHhCcccccCccEEEEEcccCCCcCHHHH
Confidence            9999999999998888877653 34578999999999996542  2222222211     13457999999999999999


Q ss_pred             HHHHHHhhccc
Q 028986          188 FEVLITCTSSY  198 (200)
Q Consensus       188 ~~~i~~~~~~~  198 (200)
                      |++|.+.+.++
T Consensus       153 ~~~l~~~i~~~  163 (164)
T 1r8s_A          153 LDWLSNQLRNQ  163 (164)
T ss_dssp             HHHHHHHC---
T ss_pred             HHHHHHHHhhc
Confidence            99999988764

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.97  E-value=4.3e-31  Score=188.28  Aligned_cols=161  Identities=17%  Similarity=0.311  Sum_probs=120.6

Q ss_pred             CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccE
Q 028986           30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAV  109 (200)
Q Consensus        30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~  109 (200)
                      ..+.++|+|+|++|||||||+++|+++.+.. +.++.+  +....+...   .+.+.+||+||++.+...+..+++.+|+
T Consensus        26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~--~~~~~~~~~---~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   99 (192)
T 2b6h_A           26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYK---NICFTVWDVGGQDKIRPLWRHYFQNTQG   99 (192)
T ss_dssp             TTSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETT--EEEEEEEET---TEEEEEEECC-----CTTHHHHHHTCCE
T ss_pred             cCCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCc--eeEEEEEEC---CEEEEEEECCCCHhHHHHHHHHhccCCE
Confidence            4567899999999999999999999877643 334444  223333332   2789999999999999999999999999


Q ss_pred             EEEEEeCCCHHhHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHH-----HcCCeEEEecCCCCCC
Q 028986          110 AVVVYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAE-----KNGMFFIETSAKTADN  183 (200)
Q Consensus       110 ~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~  183 (200)
                      +++|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.....  .+++.+...     ..+++++++||+++.|
T Consensus       100 iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~~SA~~g~g  177 (192)
T 2b6h_A          100 LIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMP--VSELTDKLGLQHLRSRTWYVQATCATQGTG  177 (192)
T ss_dssp             EEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCSSCCEEEEECBTTTTBT
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCC--HHHHHHHhCcccccCCceEEEECcCCCcCC
Confidence            99999999999999998888887653 245799999999999865422  222222111     2345799999999999


Q ss_pred             HHHHHHHHHHhhccc
Q 028986          184 INQLFEVLITCTSSY  198 (200)
Q Consensus       184 i~~~~~~i~~~~~~~  198 (200)
                      ++++|++|.+.+.++
T Consensus       178 i~~l~~~l~~~i~~q  192 (192)
T 2b6h_A          178 LYDGLDWLSHELSKR  192 (192)
T ss_dssp             HHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHhcC
Confidence            999999999988764

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.97  E-value=3.5e-30  Score=184.43  Aligned_cols=157  Identities=15%  Similarity=0.182  Sum_probs=121.2

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA  110 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  110 (200)
                      .+.++|+++|++|||||||+++|.+..+.. +.++.+...  ..+.+.+   +.+.+|||||++.+...+..+++.+|++
T Consensus        23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~-~~~t~~~~~--~~~~~~~---~~l~i~Dt~G~~~~~~~~~~~~~~~d~~   96 (198)
T 1f6b_A           23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHPTS--EELTIAG---MTFTTFDLGGHIQARRVWKNYLPAINGI   96 (198)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSC--EEEEETT---EEEEEEEECC----CCGGGGGGGGCSEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhcCCCCc-cCCCCCcee--EEEEECC---EEEEEEECCCcHhhHHHHHHHHhcCCEE
Confidence            456799999999999999999999877643 344444432  3344433   7899999999999999999999999999


Q ss_pred             EEEEeCCCHHhHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHH-----------------cCCe
Q 028986          111 VVVYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAEK-----------------NGMF  172 (200)
Q Consensus       111 i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~-----------------~~~~  172 (200)
                      ++|+|++++.+++.+..|+..+.+. ...++|+++|+||+|+..  ....+++.+++..                 .+++
T Consensus        97 i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (198)
T 1f6b_A           97 VFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLE  174 (198)
T ss_dssp             EEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEE
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc--cCCHHHHHHHhCcccccccccccccccccCceEE
Confidence            9999999999999999998887654 246799999999999865  4566777776552                 3457


Q ss_pred             EEEecCCCCCCHHHHHHHHHHhh
Q 028986          173 FIETSAKTADNINQLFEVLITCT  195 (200)
Q Consensus       173 ~~~~S~~~~~~i~~~~~~i~~~~  195 (200)
                      +++|||++|.|++++|++|.+.+
T Consensus       175 ~~~~SA~~g~gv~~l~~~l~~~l  197 (198)
T 1f6b_A          175 VFMCSVLKRQGYGEGFRWMAQYI  197 (198)
T ss_dssp             EEECBTTTTBSHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHHHhc
Confidence            99999999999999999998765

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.97  E-value=2.1e-29  Score=179.38  Aligned_cols=165  Identities=45%  Similarity=0.789  Sum_probs=144.8

Q ss_pred             CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccE
Q 028986           30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAV  109 (200)
Q Consensus        30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~  109 (200)
                      .+..++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+ ++..+.+.+||++|.+++...+..+++.+++
T Consensus        26 ~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~-~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~  104 (191)
T 1oix_A           26 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV-DGKTIKAQIWDTAGLERYRAITSAYYRGAVG  104 (191)
T ss_dssp             CSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEE-TTEEEEEEEEEECSCCSSSCCCHHHHTTCCE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEE-CCEEEEEEEEECCCCcchhhhhHHHhhcCCE
Confidence            456789999999999999999999999888778888888877777766 4555788899999998888888888899999


Q ss_pred             EEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Q 028986          110 AVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFE  189 (200)
Q Consensus       110 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~  189 (200)
                      +++|+|..+..+++.+..|+..+........|+++++||+|+...+....+++..++...++.++++|++++.+++++|+
T Consensus       105 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~  184 (191)
T 1oix_A          105 ALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQ  184 (191)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            99999999999998888898887766566789999999999977667778888999999999999999999999999999


Q ss_pred             HHHHhh
Q 028986          190 VLITCT  195 (200)
Q Consensus       190 ~i~~~~  195 (200)
                      +|.+.+
T Consensus       185 ~l~~~i  190 (191)
T 1oix_A          185 TILTEI  190 (191)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            998865

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.97  E-value=1.2e-29  Score=180.55  Aligned_cols=156  Identities=20%  Similarity=0.260  Sum_probs=125.4

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA  110 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  110 (200)
                      .+.++|+++|++|||||||+++|.+..+.. +.++.+..  ...+.+.+   +.+.+||+||++.+...+..+++.+|++
T Consensus        21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~~-~~~t~~~~--~~~~~~~~---~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   94 (190)
T 1m2o_B           21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPT--SEELAIGN---IKFTTFDLGGHIQARRLWKDYFPEVNGI   94 (190)
T ss_dssp             ---CEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCCSCE--EEEEEETT---EEEEEEECCCSGGGTTSGGGGCTTCCEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCc-cccCCCCC--eEEEEECC---EEEEEEECCCCHHHHHHHHHHHhcCCEE
Confidence            456799999999999999999999987653 44455443  33444433   7899999999999999999999999999


Q ss_pred             EEEEeCCCHHhHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHH------------cCCeEEEec
Q 028986          111 VVVYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAEK------------NGMFFIETS  177 (200)
Q Consensus       111 i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~S  177 (200)
                      ++|+|++++.+++.+..|+..+.+. ...+.|+++|+||+|+..  ....+++.+.+..            .+++++++|
T Consensus        95 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  172 (190)
T 1m2o_B           95 VFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCS  172 (190)
T ss_dssp             EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT--CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECB
T ss_pred             EEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC--CCCHHHHHHHhCCccccccccccccceEEEEEeE
Confidence            9999999999999999998887654 246799999999999965  4556666665432            346799999


Q ss_pred             CCCCCCHHHHHHHHHHh
Q 028986          178 AKTADNINQLFEVLITC  194 (200)
Q Consensus       178 ~~~~~~i~~~~~~i~~~  194 (200)
                      |++|.|++++|++|.+.
T Consensus       173 a~~g~gi~~l~~~l~~~  189 (190)
T 1m2o_B          173 VVMRNGYLEAFQWLSQY  189 (190)
T ss_dssp             TTTTBSHHHHHHHHHTT
T ss_pred             CCcCCCHHHHHHHHHhh
Confidence            99999999999999865

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.97  E-value=3.9e-30  Score=181.53  Aligned_cols=161  Identities=19%  Similarity=0.323  Sum_probs=123.0

Q ss_pred             CCCCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccC
Q 028986           27 SDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRG  106 (200)
Q Consensus        27 ~~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~  106 (200)
                      .....+.++|+|+|++|||||||+++|.+..+ ..+.++.+...  ..+.+.+   +.+.+||+||++++...+..+++.
T Consensus        15 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~--~~~~~~~---~~~~i~Dt~G~~~~~~~~~~~~~~   88 (181)
T 2h17_A           15 VPRGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV--EEIVINN---TRFLMWDIGGQESLRSSWNTYYTN   88 (181)
T ss_dssp             ------CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC--EEEEETT---EEEEEEEESSSGGGTCGGGGGGTT
T ss_pred             cCCCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee--EEEEECC---EEEEEEECCCCHhHHHHHHHHhcc
Confidence            34456789999999999999999999999876 33444444333  2333322   789999999999999999999999


Q ss_pred             ccEEEEEEeCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHH-----HcCCeEEEecCCC
Q 028986          107 AAVAVVVYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAE-----KNGMFFIETSAKT  180 (200)
Q Consensus       107 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~  180 (200)
                      +|++++|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+...  ...+++.+...     ..+++++++||++
T Consensus        89 ~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~  166 (181)
T 2h17_A           89 TEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALT  166 (181)
T ss_dssp             CCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECBTTT
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC--CCHHHHHHHhCcccccCCceEEEEccCCC
Confidence            999999999999999999988888776542 467999999999998653  23344444332     2355899999999


Q ss_pred             CCCHHHHHHHHHHhh
Q 028986          181 ADNINQLFEVLITCT  195 (200)
Q Consensus       181 ~~~i~~~~~~i~~~~  195 (200)
                      +.|++++|++|.+.+
T Consensus       167 g~gi~~l~~~l~~~l  181 (181)
T 2h17_A          167 GEGLCQGLEWMMSRL  181 (181)
T ss_dssp             TBTHHHHHHHHHTC-
T ss_pred             CcCHHHHHHHHHhhC
Confidence            999999999998653

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.97  E-value=1.8e-30  Score=185.55  Aligned_cols=164  Identities=21%  Similarity=0.285  Sum_probs=122.4

Q ss_pred             CCCCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEE--EEEecCCcEEEEEEEeCCChhhhhhcc---c
Q 028986           27 SDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQ--TIALQDSTTVKFEIWDTAGQERYAALA---P  101 (200)
Q Consensus        27 ~~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~D~~g~~~~~~~~---~  101 (200)
                      ..+.++.+||+|+|++|||||||++++.+... ..  ++.+.++...  ...+.++..+.+.+||++|++.+....   .
T Consensus        14 ~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~   90 (196)
T 3llu_A           14 LYFQGSKPRILLMGLRRSGKSSIQKVVFHKMS-PN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYE   90 (196)
T ss_dssp             ------CCEEEEEESTTSSHHHHHHHHHSCCC-GG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHH
T ss_pred             CcccCcceEEEEECCCCCCHHHHHHHHHhcCC-Cc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcc
Confidence            34567889999999999999999998887533 22  3333333222  223334455789999999999877665   7


Q ss_pred             ccccCccEEEEEEeCCCH--HhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCC-------CcCCHHHHHHHHH----H
Q 028986          102 LYYRGAAVAVVVYDITSP--DSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK-------REVPAQDGIEYAE----K  168 (200)
Q Consensus       102 ~~~~~~d~~i~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~-------~~~~~~~~~~~~~----~  168 (200)
                      .+++.+|++|+|||++++  +++..+..|+..+... ..++|+++|+||+|+...       +.+..++...++.    .
T Consensus        91 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~  169 (196)
T 3llu_A           91 MIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKV-NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEK  169 (196)
T ss_dssp             HHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHH-CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred             cccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhc-CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhc
Confidence            899999999999999997  6677777777776544 568999999999998552       3444555667777    6


Q ss_pred             cCCeEEEecCCCCCCHHHHHHHHHHhh
Q 028986          169 NGMFFIETSAKTADNINQLFEVLITCT  195 (200)
Q Consensus       169 ~~~~~~~~S~~~~~~i~~~~~~i~~~~  195 (200)
                      ++++++++||++ .|++++|+.|++.+
T Consensus       170 ~~~~~~e~Sa~~-~~v~~~f~~l~~~l  195 (196)
T 3llu_A          170 LHLSFYLTSIYD-HSIFEAFSKVVQKL  195 (196)
T ss_dssp             SCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred             CCcceEEEEech-hhHHHHHHHHHHHh
Confidence            788999999999 99999999999875

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=1.1e-29  Score=180.04  Aligned_cols=160  Identities=19%  Similarity=0.323  Sum_probs=123.6

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA  110 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  110 (200)
                      .+.++|+|+|++|||||||+++|.++.+. .+.++.+...  ..+.+.+   +.+.+||+||++++...+..+++++|++
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~--~~~~~~~---~~~~i~Dt~G~~~~~~~~~~~~~~~d~i   87 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNV--EEIVINN---TRFLMWDIGGQESLRSSWNTYYTNTEFV   87 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSSC--EEEEETT---EEEEEEECCC----CGGGHHHHTTCCEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccce--EEEEECC---EEEEEEECCCCHhHHHHHHHHhcCCCEE
Confidence            45789999999999999999999987765 3344444332  2333332   7899999999999999999999999999


Q ss_pred             EEEEeCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHH-----HcCCeEEEecCCCCCCH
Q 028986          111 VVVYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAE-----KNGMFFIETSAKTADNI  184 (200)
Q Consensus       111 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~i  184 (200)
                      ++|+|++++++++.+..|+..+.... ..+.|+++|+||+|+...  ...+++.+...     ..+++++++||+++.|+
T Consensus        88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi  165 (187)
T 1zj6_A           88 IVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEGL  165 (187)
T ss_dssp             EEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTH
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCC--CCHHHHHHHhChhhhcCCCcEEEEccCCCCcCH
Confidence            99999999999999988988876542 357999999999999653  23444444432     23568999999999999


Q ss_pred             HHHHHHHHHhhccc
Q 028986          185 NQLFEVLITCTSSY  198 (200)
Q Consensus       185 ~~~~~~i~~~~~~~  198 (200)
                      +++|++|.+.+.+.
T Consensus       166 ~~l~~~l~~~~~~~  179 (187)
T 1zj6_A          166 CQGLEWMMSRLKIR  179 (187)
T ss_dssp             HHHHHHHHHHHCC-
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999988654

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.97  E-value=2.1e-29  Score=177.93  Aligned_cols=160  Identities=18%  Similarity=0.267  Sum_probs=123.4

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA  110 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  110 (200)
                      ...++|+++|++|||||||+++|.+..+. .+.++.+..  ...+.+.   .+.+.+||+||++.+...+..+++.+|++
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g~~--~~~~~~~---~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~   87 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGFN--IKSVQSQ---GFKLNVWDIGGQRKIRPYWRSYFENTDIL   87 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETTEE--EEEEEET---TEEEEEEECSSCGGGHHHHHHHHTTCSEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCCeE--EEEEEEC---CEEEEEEECCCCHHHHHHHHHHhCCCCEE
Confidence            45789999999999999999999987542 234444432  3334443   27899999999999999999999999999


Q ss_pred             EEEEeCCCHHhHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHH-----HcCCeEEEecCCCCCCH
Q 028986          111 VVVYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAE-----KNGMFFIETSAKTADNI  184 (200)
Q Consensus       111 i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~i  184 (200)
                      ++|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.....  .++..+...     ..+++++++||++|.|+
T Consensus        88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi  165 (181)
T 1fzq_A           88 IYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP--ASEIAEGLNLHTIRDRVWQIQSCSALTGEGV  165 (181)
T ss_dssp             EEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCC--HHHHHHHhCchhccCCceEEEEccCCCCCCH
Confidence            9999999999999998888776543 246789999999999976432  233332211     23557999999999999


Q ss_pred             HHHHHHHHHhhccc
Q 028986          185 NQLFEVLITCTSSY  198 (200)
Q Consensus       185 ~~~~~~i~~~~~~~  198 (200)
                      +++|++|.+.+.++
T Consensus       166 ~~l~~~l~~~~~~~  179 (181)
T 1fzq_A          166 QDGMNWVCKNVNAK  179 (181)
T ss_dssp             HHHHHHHHHTC---
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999988654

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.97  E-value=2.4e-30  Score=183.72  Aligned_cols=160  Identities=21%  Similarity=0.341  Sum_probs=125.2

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA  110 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  110 (200)
                      ++.++|+|+|++|||||||+++|.++.+.. +.++.+..  ...+...   ...+.+|||||++.+...+..+++.+|++
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~--~~~~~~~---~~~~~~~Dt~G~~~~~~~~~~~~~~~d~i   93 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVN--LETLQYK---NISFEVWDLGGQTGVRPYWRCYFSDTDAV   93 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTCC--EEEEEET---TEEEEEEEECCSSSSCCCCSSSSTTCCEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCceE--EEEEEEC---CEEEEEEECCCCHhHHHHHHHHhhcCCEE
Confidence            457899999999999999999998876643 33444433  2333333   27899999999999999999999999999


Q ss_pred             EEEEeCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCcCCHHHHHHHH-----HHcCCeEEEecCCCCCCH
Q 028986          111 VVVYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYA-----EKNGMFFIETSAKTADNI  184 (200)
Q Consensus       111 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~i  184 (200)
                      ++|+|++++++++.+..|+..+.... ..+.|+++|+||+|+.....  .++..+..     ...+++++++||+++.|+
T Consensus        94 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  171 (189)
T 2x77_A           94 IYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAAS--EAEIAEQLGVSSIMNRTWTIVKSSSKTGDGL  171 (189)
T ss_dssp             EEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTH
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCC--HHHHHHHhChhhccCCceEEEEccCCCccCH
Confidence            99999999999998888887775542 46899999999999965432  22222221     223557999999999999


Q ss_pred             HHHHHHHHHhhccc
Q 028986          185 NQLFEVLITCTSSY  198 (200)
Q Consensus       185 ~~~~~~i~~~~~~~  198 (200)
                      ++++++|.+.+.+.
T Consensus       172 ~~l~~~l~~~i~~~  185 (189)
T 2x77_A          172 VEGMDWLVERLREQ  185 (189)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999988764

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.96  E-value=2.9e-30  Score=182.75  Aligned_cols=165  Identities=19%  Similarity=0.405  Sum_probs=121.8

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHcC--CCCCCCccccceeEEEEEEEec--CCcEEEEEEEeCCChhhhhhcccccccCcc
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVRG--QFDPTSKVTVGASFLSQTIALQ--DSTTVKFEIWDTAGQERYAALAPLYYRGAA  108 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d  108 (200)
                      ++||+|+|++|||||||+++|.+.  .+...+.++.+.++....+...  ++..+.+.+||++|++++...+..++..+|
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   81 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA   81 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence            579999999999999999999985  3444455666666555443321  233478999999999999999999999999


Q ss_pred             EEEEEEeCCCH-HhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCC---HHHHHHHHHHcCCe----EEEecCCC
Q 028986          109 VAVVVYDITSP-DSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVP---AQDGIEYAEKNGMF----FIETSAKT  180 (200)
Q Consensus       109 ~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~---~~~~~~~~~~~~~~----~~~~S~~~  180 (200)
                      ++++|||++++ .+++.+..|+..+... ..+.|+++|+||+|+...+...   .+....++..++++    ++++||++
T Consensus        82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  160 (184)
T 2zej_A           82 LYLAVYDLSKGQAEVDAMKPWLFNIKAR-ASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATE  160 (184)
T ss_dssp             EEEEEEEGGGCHHHHHTHHHHHHHHHHH-CTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTS
T ss_pred             EEEEEEeCCcchhHHHHHHHHHHHHHhh-CCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEeccc
Confidence            99999999987 5788999999988765 3578999999999986543322   22334555556776    99999999


Q ss_pred             CC-CHHHHHHHHHHhhccc
Q 028986          181 AD-NINQLFEVLITCTSSY  198 (200)
Q Consensus       181 ~~-~i~~~~~~i~~~~~~~  198 (200)
                      +. +++++++.|.+.+.+.
T Consensus       161 ~~~~~~~l~~~i~~~~~~~  179 (184)
T 2zej_A          161 ESDALAKLRKTIINESLNF  179 (184)
T ss_dssp             CCHHHHHHHHHHHHHHHCC
T ss_pred             CchhHHHHHHHHHHHHhcc
Confidence            97 9999999999887653

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.94  E-value=4.9e-32  Score=194.80  Aligned_cols=162  Identities=31%  Similarity=0.607  Sum_probs=133.0

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA  110 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  110 (200)
                      .+.++|+|+|++|+|||||+++|++..+...+.++.+..+ ...+.. ++..+.+.+||+||++++...+..+++++|++
T Consensus        28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i  105 (204)
T 3th5_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMV-DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVF  105 (204)
Confidence            5789999999999999999999998877666555554443 223333 34447888999999999999999999999999


Q ss_pred             EEEEeCCCHHhHHHHH-HHHHHHHHcCCCCCeEEEEEeCCCCCCCC------------cCCHHHHHHHHHHcCC-eEEEe
Q 028986          111 VVVYDITSPDSFNKAQ-YWVKELQKHGSPDIVMALVGNKADLHEKR------------EVPAQDGIEYAEKNGM-FFIET  176 (200)
Q Consensus       111 i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~  176 (200)
                      ++|||++++.+++.+. .|+..+.... .++|+++|+||+|+....            .+..++..++++.+++ +++++
T Consensus       106 ilv~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~v  184 (204)
T 3th5_A          106 LICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC  184 (204)
Confidence            9999999999998886 7888777653 378999999999996542            4555677778888887 89999


Q ss_pred             cCCCCCCHHHHHHHHHHhh
Q 028986          177 SAKTADNINQLFEVLITCT  195 (200)
Q Consensus       177 S~~~~~~i~~~~~~i~~~~  195 (200)
                      ||++|.|++++|++|.+.+
T Consensus       185 SA~~g~gi~~l~~~l~~~i  203 (204)
T 3th5_A          185 SALTQRGLKTVFDEAIRAV  203 (204)
Confidence            9999999999999998764

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.96  E-value=2.4e-29  Score=177.55  Aligned_cols=159  Identities=23%  Similarity=0.369  Sum_probs=122.4

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA  110 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  110 (200)
                      .+.++|+|+|++|||||||+++|.++.+ ..+.++.+...  ..+.+.+   ..+.+||+||++.+...+..+++.+|++
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~~--~~~~~~~---~~~~i~Dt~G~~~~~~~~~~~~~~~d~i   89 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNV--ETLSYKN---LKLNVWDLGGQTSIRPYWRCYYADTAAV   89 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCCE--EEEEETT---EEEEEEEEC----CCTTGGGTTTTEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccce--EEEEECC---EEEEEEECCCCHhHHHHHHHHhccCCEE
Confidence            5678999999999999999999998765 33444555332  3333432   7899999999999999999999999999


Q ss_pred             EEEEeCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHH-----cCCeEEEecCCCCCCH
Q 028986          111 VVVYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAEK-----NGMFFIETSAKTADNI  184 (200)
Q Consensus       111 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~S~~~~~~i  184 (200)
                      ++|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+....  ..+++.+....     .+++++++||+++.|+
T Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi  167 (183)
T 1moz_A           90 IFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGAL--SASEVSKELNLVELKDRSWSIVASSAIKGEGI  167 (183)
T ss_dssp             EEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCC--CHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCC--CHHHHHHHhCcccccCCceEEEEccCCCCcCH
Confidence            99999999999999988888876543 4689999999999986542  33444433321     2447999999999999


Q ss_pred             HHHHHHHHHhhcc
Q 028986          185 NQLFEVLITCTSS  197 (200)
Q Consensus       185 ~~~~~~i~~~~~~  197 (200)
                      ++++++|.+.+.+
T Consensus       168 ~~l~~~l~~~~~~  180 (183)
T 1moz_A          168 TEGLDWLIDVIKE  180 (183)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998865

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.96  E-value=2.6e-28  Score=187.34  Aligned_cols=164  Identities=30%  Similarity=0.577  Sum_probs=139.3

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA  110 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  110 (200)
                      ...++|+++|.+|+|||||+++|++..+...+.++.+..+ ...+.. ++..+.+.+||+||++.+...+..+++.+|++
T Consensus       153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~  230 (332)
T 2wkq_A          153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMV-DGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF  230 (332)
T ss_dssp             TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEE-TTEEEEEEEEEECCCGGGTTTGGGGCTTCSEE
T ss_pred             cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEE-CCEEEEEEEEeCCCchhhhHHHHHhccCCCEE
Confidence            3458999999999999999999999887766666665544 333444 45568899999999999999999999999999


Q ss_pred             EEEEeCCCHHhHHHHH-HHHHHHHHcCCCCCeEEEEEeCCCCCCC------------CcCCHHHHHHHHHHcCC-eEEEe
Q 028986          111 VVVYDITSPDSFNKAQ-YWVKELQKHGSPDIVMALVGNKADLHEK------------REVPAQDGIEYAEKNGM-FFIET  176 (200)
Q Consensus       111 i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~  176 (200)
                      ++|||++++.+++.+. .|+..+.... .++|+++|+||+|+...            +.+..+++.+++...++ +++++
T Consensus       231 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  309 (332)
T 2wkq_A          231 LICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC  309 (332)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHC-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhhC-CCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEe
Confidence            9999999999998886 7888887763 38999999999998553            56778888999999987 89999


Q ss_pred             cCCCCCCHHHHHHHHHHhhcc
Q 028986          177 SAKTADNINQLFEVLITCTSS  197 (200)
Q Consensus       177 S~~~~~~i~~~~~~i~~~~~~  197 (200)
                      ||++|.|++++|++|.+.+..
T Consensus       310 Sa~~~~gi~~l~~~l~~~~~~  330 (332)
T 2wkq_A          310 SALTQRGLKTVFDEAIRAVLC  330 (332)
T ss_dssp             CTTTCTTHHHHHHHHHHHHHC
T ss_pred             cCCCCcCHHHHHHHHHHHHhc
Confidence            999999999999999987753

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.96  E-value=9.2e-29  Score=178.88  Aligned_cols=162  Identities=18%  Similarity=0.221  Sum_probs=114.0

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhh-cccccccCccE
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAA-LAPLYYRGAAV  109 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-~~~~~~~~~d~  109 (200)
                      ...++|+|+|++|+|||||+++|++..+...+.+ ....+..  +.+.+...+.+.+|||||++.+.. .+..+++.+|+
T Consensus         5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   81 (214)
T 2fh5_B            5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTS-ITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARA   81 (214)
T ss_dssp             ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCC-CSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCC-cceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCE
Confidence            4678999999999999999999999887665543 3333322  445443347899999999998887 78888999999


Q ss_pred             EEEEEeCCCHH-hHHHH-HHHHHHHHH--cCCCCCeEEEEEeCCCCCCCCcCC--HHHHHHHHH----------------
Q 028986          110 AVVVYDITSPD-SFNKA-QYWVKELQK--HGSPDIVMALVGNKADLHEKREVP--AQDGIEYAE----------------  167 (200)
Q Consensus       110 ~i~v~d~~~~~-s~~~~-~~~~~~i~~--~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~----------------  167 (200)
                      +|+|||+++.. ++... ..|...+..  ....++|+++|+||+|+.......  .+.+.+...                
T Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~  161 (214)
T 2fh5_B           82 VVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSS  161 (214)
T ss_dssp             EEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC---------
T ss_pred             EEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCC
Confidence            99999999853 45555 444444443  235578999999999997653311  011111111                


Q ss_pred             -----------------Hc--CCeEEEecCCCC------CCHHHHHHHHHHhh
Q 028986          168 -----------------KN--GMFFIETSAKTA------DNINQLFEVLITCT  195 (200)
Q Consensus       168 -----------------~~--~~~~~~~S~~~~------~~i~~~~~~i~~~~  195 (200)
                                       .+  +++|++|||++|      .|++++|++|.+.+
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~~  214 (214)
T 2fh5_B          162 STAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKIA  214 (214)
T ss_dssp             ---CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHHC
T ss_pred             ccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHhC
Confidence                             11  567999999999      99999999998763

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.96  E-value=2.9e-28  Score=169.52  Aligned_cols=154  Identities=19%  Similarity=0.187  Sum_probs=112.4

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhh------hccccccc-
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYA------ALAPLYYR-  105 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~------~~~~~~~~-  105 (200)
                      .++|+++|++|+|||||+++|.+..+.....++.+.+.....+.+.+   ..+.+|||||++.+.      .....++. 
T Consensus         3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~---~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~   79 (165)
T 2wji_A            3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG---EKFKVVDLPGVYSLTANSIDEIIARDYIIN   79 (165)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT---EEEEEEECCCCSCSSSSSHHHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC---cEEEEEECCCcccCCCcchhHHHHHHHHhc
Confidence            57999999999999999999998765443333333333333344432   579999999987653      23344554 


Q ss_pred             -CccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCH
Q 028986          106 -GAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNI  184 (200)
Q Consensus       106 -~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i  184 (200)
                       ++|++++|+|+++.+.   ...|+..+.+   .+.|+++|+||+|+...+.+.. +..+++..++++++++||++|.|+
T Consensus        80 ~~~~~~i~v~D~~~~~~---~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA~~~~~v  152 (165)
T 2wji_A           80 EKPDLVVNIVDATALER---NLYLTLQLME---MGANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAKKMGI  152 (165)
T ss_dssp             HCCSEEEEEEETTCHHH---HHHHHHHHHH---TTCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECBGGGTBSH
T ss_pred             CCCCEEEEEecCCchhH---hHHHHHHHHh---cCCCEEEEEEchHhccccChhh-HHHHHHHHhCCCEEEEEcCCCCCH
Confidence             7999999999998643   3446666654   3689999999999854433332 357778888999999999999999


Q ss_pred             HHHHHHHHHhhc
Q 028986          185 NQLFEVLITCTS  196 (200)
Q Consensus       185 ~~~~~~i~~~~~  196 (200)
                      +++|++|.+.+.
T Consensus       153 ~~l~~~l~~~~~  164 (165)
T 2wji_A          153 EELKKAISIAVK  164 (165)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhh
Confidence            999999998774

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.96  E-value=2.1e-29  Score=187.04  Aligned_cols=166  Identities=23%  Similarity=0.350  Sum_probs=121.6

Q ss_pred             CCCceeeEEEEcCC---------CCcHHHHHHHHHc---CCCCCCCcccc-ceeEEEEEEE-------------ecCCcE
Q 028986           29 AKNLRVKLVLLGDS---------GVGKSCIVLRFVR---GQFDPTSKVTV-GASFLSQTIA-------------LQDSTT   82 (200)
Q Consensus        29 ~~~~~~~i~i~G~~---------~sGKSsli~~l~~---~~~~~~~~~~~-~~~~~~~~~~-------------~~~~~~   82 (200)
                      .....+||+|+|.+         |||||||+++|++   ..+...+.++. +.++....+.             ..++..
T Consensus        15 ~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~   94 (255)
T 3c5h_A           15 YFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE   94 (255)
T ss_dssp             SCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC--------
T ss_pred             CCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcE
Confidence            44667999999999         9999999999999   44544444443 2222111111             013455


Q ss_pred             EEEEEEe-----------------------CCChhhhhhccccccc---------------------CccEEEEEEeCCC
Q 028986           83 VKFEIWD-----------------------TAGQERYAALAPLYYR---------------------GAAVAVVVYDITS  118 (200)
Q Consensus        83 ~~~~l~D-----------------------~~g~~~~~~~~~~~~~---------------------~~d~~i~v~d~~~  118 (200)
                      +.+.+||                       ++|++.+...+..++.                     ++|++|+|||+++
T Consensus        95 ~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~  174 (255)
T 3c5h_A           95 CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSR  174 (255)
T ss_dssp             -CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC
T ss_pred             EEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCC
Confidence            7899999                       5556666666777776                     7999999999999


Q ss_pred             H--HhHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHH-cCCeEEEecCCCCCCHHHHHHHHHHh
Q 028986          119 P--DSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAEK-NGMFFIETSAKTADNINQLFEVLITC  194 (200)
Q Consensus       119 ~--~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~S~~~~~~i~~~~~~i~~~  194 (200)
                      +  .+++.+..|+..+... ...++|+++|+||+|+...+.+  ++..+++.. .+++++++||+++.|++++|++|.+.
T Consensus       175 ~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~~  252 (255)
T 3c5h_A          175 GMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQL  252 (255)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred             CchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            8  9999999999888764 3457999999999998654443  566777766 48899999999999999999999987


Q ss_pred             hc
Q 028986          195 TS  196 (200)
Q Consensus       195 ~~  196 (200)
                      +.
T Consensus       253 l~  254 (255)
T 3c5h_A          253 ID  254 (255)
T ss_dssp             HH
T ss_pred             hc
Confidence            64

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.96  E-value=5.8e-28  Score=169.61  Aligned_cols=156  Identities=14%  Similarity=0.224  Sum_probs=117.3

Q ss_pred             CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccE
Q 028986           30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAV  109 (200)
Q Consensus        30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~  109 (200)
                      ..+.++|+|+|++|||||||+++|.+..+...+.++.+.+.....+.+.+   ..+.+|||||++.+...+..++..+|+
T Consensus         5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~Dt~G~~~~~~~~~~~~~~~d~   81 (178)
T 2lkc_A            5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVND---KKITFLDTPGHEAFTTMRARGAQVTDI   81 (178)
T ss_dssp             CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETT---EEEEESCCCSSSSSSCSCCSSCCCCCE
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCC---ceEEEEECCCCHHHHHHHHHHHhhCCE
Confidence            45678999999999999999999999887665555554444444444433   468899999999999999999999999


Q ss_pred             EEEEEeCCCH---HhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHc-------C--CeEEEec
Q 028986          110 AVVVYDITSP---DSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKN-------G--MFFIETS  177 (200)
Q Consensus       110 ~i~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~-------~--~~~~~~S  177 (200)
                      +++|+|++++   .+++.+    ..+   ...++|+++|+||+|+...   ..++........       +  ++++++|
T Consensus        82 ~i~v~d~~~~~~~~~~~~l----~~~---~~~~~p~ilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  151 (178)
T 2lkc_A           82 VILVVAADDGVMPQTVEAI----NHA---KAANVPIIVAINKMDKPEA---NPDRVMQELMEYNLVPEEWGGDTIFCKLS  151 (178)
T ss_dssp             EEEEEETTCCCCHHHHHHH----HHH---GGGSCCEEEEEETTTSSCS---CHHHHHHHHTTTTCCBTTTTSSEEEEECC
T ss_pred             EEEEEECCCCCcHHHHHHH----HHH---HhCCCCEEEEEECccCCcC---CHHHHHHHHHhcCcChhHcCCcccEEEEe
Confidence            9999999884   333322    222   2347899999999998653   223333333222       1  5799999


Q ss_pred             CCCCCCHHHHHHHHHHhhccc
Q 028986          178 AKTADNINQLFEVLITCTSSY  198 (200)
Q Consensus       178 ~~~~~~i~~~~~~i~~~~~~~  198 (200)
                      |+++.|++++|++|.+.+...
T Consensus       152 a~~~~gv~~l~~~l~~~~~~~  172 (178)
T 2lkc_A          152 AKTKEGLDHLLEMILLVSEME  172 (178)
T ss_dssp             SSSSHHHHHHHHHHHHHHHHT
T ss_pred             cCCCCCHHHHHHHHHHhhhhh
Confidence            999999999999999887654

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.95  E-value=1.8e-27  Score=173.89  Aligned_cols=164  Identities=15%  Similarity=0.102  Sum_probs=114.1

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCCh------hhh---hhccc
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ------ERY---AALAP  101 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~------~~~---~~~~~  101 (200)
                      ...++|+|+|++|||||||+++|++..+.....+..............   ...+.+|||||.      +..   ...+.
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~l~DtpG~~~~~~~~~~~~~~~~~~  103 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHK---LNKYQIIDTPGLLDRAFENRNTIEMTTIT  103 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEET---TEEEEEEECTTTTTSCGGGCCHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecC---CCeEEEEECCCCcCcccchhhhHHHHHHH
Confidence            567899999999999999999999976532211111222222222222   268999999998      321   11223


Q ss_pred             ccccCccEEEEEEeCCCHHhHH--HHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHH---HHHHHHHHcC--CeEE
Q 028986          102 LYYRGAAVAVVVYDITSPDSFN--KAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQ---DGIEYAEKNG--MFFI  174 (200)
Q Consensus       102 ~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~---~~~~~~~~~~--~~~~  174 (200)
                      .++..+|++|+|+|++++.+++  ....|+..+... ..+.|+++|+||+|+...+++..+   ....++...+  ++++
T Consensus       104 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (228)
T 2qu8_A          104 ALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV-FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFS  182 (228)
T ss_dssp             HHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC-C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEE
T ss_pred             HhhccccEEEEEEecccccCcchHHHHHHHHHHHHh-hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEE
Confidence            4567789999999999987764  234555555543 347899999999999876666554   4556666666  8899


Q ss_pred             EecCCCCCCHHHHHHHHHHhhccc
Q 028986          175 ETSAKTADNINQLFEVLITCTSSY  198 (200)
Q Consensus       175 ~~S~~~~~~i~~~~~~i~~~~~~~  198 (200)
                      ++||++|.|++++|++|.+.+.+.
T Consensus       183 ~~SA~~g~gi~~l~~~l~~~i~~~  206 (228)
T 2qu8_A          183 SFSTLTGVGVEQAKITACELLKND  206 (228)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             EEecccCCCHHHHHHHHHHHHHHH
Confidence            999999999999999999987653

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.95  E-value=3.1e-28  Score=186.72  Aligned_cols=161  Identities=19%  Similarity=0.321  Sum_probs=119.2

Q ss_pred             CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccE
Q 028986           30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAV  109 (200)
Q Consensus        30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~  109 (200)
                      ....++|+|+|++|+|||||+++|.+..+... .++.+..+.  .+..   ..+.+.+|||||++.+...+..+++.+|+
T Consensus       162 ~~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~~~--~~~~---~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~  235 (329)
T 3o47_A          162 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE--TVEY---KNISFTVWDVGGQDKIRPLWRHYFQNTQG  235 (329)
T ss_dssp             -CCSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEEEE--EEEE---TTEEEEEEECC-----CCSHHHHHTTEEE
T ss_pred             ccCcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceEEE--EEec---CcEEEEEEECCCCHhHHHHHHHHhccCCE
Confidence            45678999999999999999999998776432 234443332  2222   22789999999999999999999999999


Q ss_pred             EEEEEeCCCHHhHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHH-----cCCeEEEecCCCCCC
Q 028986          110 AVVVYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAEK-----NGMFFIETSAKTADN  183 (200)
Q Consensus       110 ~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~S~~~~~~  183 (200)
                      +|+|||++++.+++.+..|+..+... ...++|+++|+||+|+.....  .+++......     .+++++++||+++.|
T Consensus       236 vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~vSAk~g~g  313 (329)
T 3o47_A          236 LIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRHRNWYIQATCATSGDG  313 (329)
T ss_dssp             EEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTCTTCCSSCEEEEECBTTTTBT
T ss_pred             EEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccC--HHHHHHHhchhhhhcCCCEEEEEECCCCcC
Confidence            99999999999999887777666443 346899999999999876432  2333322211     245799999999999


Q ss_pred             HHHHHHHHHHhhccc
Q 028986          184 INQLFEVLITCTSSY  198 (200)
Q Consensus       184 i~~~~~~i~~~~~~~  198 (200)
                      ++++|++|.+.+.++
T Consensus       314 i~el~~~l~~~l~~~  328 (329)
T 3o47_A          314 LYEGLDWLSNQLRNQ  328 (329)
T ss_dssp             HHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999999988764

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.95  E-value=4.3e-27  Score=178.88  Aligned_cols=161  Identities=21%  Similarity=0.342  Sum_probs=125.7

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHcCCCC---CCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhh-----hhccccc
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVRGQFD---PTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERY-----AALAPLY  103 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-----~~~~~~~  103 (200)
                      ..+||+++|++|||||||+++|+++...   ..+.+|.+..+..  +.+ ++ .+.+.+||+||++.+     ...+..+
T Consensus         2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~--~~~-~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~   77 (307)
T 3r7w_A            2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSH--LRF-LG-NMTLNLWDCGGQDVFMENYFTKQKDHI   77 (307)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEE--EEE-TT-TEEEEEEEECCSHHHHHHHHTTTHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEE--EEe-CC-ceEEEEEECCCcHHHhhhhhhhHHHHH
Confidence            4689999999999999999999987322   1334455554443  333 23 378999999999887     6778888


Q ss_pred             ccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcC--CCCCeEEEEEeCCCCCC--CCc----CCHHHHHHHHHHcC---Ce
Q 028986          104 YRGAAVAVVVYDITSPDSFNKAQYWVKELQKHG--SPDIVMALVGNKADLHE--KRE----VPAQDGIEYAEKNG---MF  172 (200)
Q Consensus       104 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~p~iiv~nK~D~~~--~~~----~~~~~~~~~~~~~~---~~  172 (200)
                      ++.+|++|+|||++++.+++.+..|...+....  .+++|+++|+||+|+..  .+.    ...+++.+++..++   ++
T Consensus        78 ~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~  157 (307)
T 3r7w_A           78 FQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLI  157 (307)
T ss_dssp             HTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCE
T ss_pred             hccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeE
Confidence            999999999999999999998877765544321  56799999999999976  333    44577788888886   78


Q ss_pred             EEEecCCCCCCHHHHHHHHHHhhcc
Q 028986          173 FIETSAKTADNINQLFEVLITCTSS  197 (200)
Q Consensus       173 ~~~~S~~~~~~i~~~~~~i~~~~~~  197 (200)
                      ++++||++ .++.++|..+++.+..
T Consensus       158 ~~~tSa~~-~~i~e~~~~iv~~li~  181 (307)
T 3r7w_A          158 GFPTSIWD-ESLYKAWSQIVCSLIP  181 (307)
T ss_dssp             EEECCTTS-SHHHHHHHHHHHTTCS
T ss_pred             EEEeeecC-ChHHHHHHHHHHHHcC
Confidence            99999999 8999999998876543

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.95  E-value=3e-27  Score=168.39  Aligned_cols=159  Identities=16%  Similarity=0.160  Sum_probs=108.3

Q ss_pred             CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCC----------hhhhhhc
Q 028986           30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAG----------QERYAAL   99 (200)
Q Consensus        30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g----------~~~~~~~   99 (200)
                      ....++|+|+|++|+|||||+++|++..+.....++.+.+........ ++   .+.+|||||          ++.+...
T Consensus        20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~-~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~   95 (195)
T 1svi_A           20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII-ND---ELHFVDVPGYGFAKVSKSEREAWGRM   95 (195)
T ss_dssp             CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE-TT---TEEEEECCCBCCCSSCHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEE-CC---cEEEEECCCCCccccCHHHHHHHHHH
Confidence            456789999999999999999999998754444444444433333333 22   589999999          7777777


Q ss_pred             ccccccCc---cEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCH--HHHHH-HHHHcCCeE
Q 028986          100 APLYYRGA---AVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPA--QDGIE-YAEKNGMFF  173 (200)
Q Consensus       100 ~~~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~--~~~~~-~~~~~~~~~  173 (200)
                      +..+++.+   |++++|+|++++.++.... ++..+..   .+.|+++|+||+|+....+...  +++.+ +....++++
T Consensus        96 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  171 (195)
T 1svi_A           96 IETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDEL  171 (195)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEE
T ss_pred             HHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCce
Confidence            77777766   9999999999876665432 2233332   4789999999999976544221  22222 222236789


Q ss_pred             EEecCCCCCCHHHHHHHHHHhhc
Q 028986          174 IETSAKTADNINQLFEVLITCTS  196 (200)
Q Consensus       174 ~~~S~~~~~~i~~~~~~i~~~~~  196 (200)
                      +++||+++.|++++|++|.+.+.
T Consensus       172 ~~~Sa~~~~gv~~l~~~l~~~l~  194 (195)
T 1svi_A          172 ILFSSETKKGKDEAWGAIKKMIN  194 (195)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHT
T ss_pred             EEEEccCCCCHHHHHHHHHHHhc
Confidence            99999999999999999998875

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.94  E-value=4.8e-27  Score=166.58  Aligned_cols=155  Identities=24%  Similarity=0.230  Sum_probs=114.2

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCC-----------hhhhhhcccc
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAG-----------QERYAALAPL  102 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g-----------~~~~~~~~~~  102 (200)
                      ++|+|+|++|||||||+++|.+..+...+.++.+...  ..+...     .+.+||+||           ++.+...+..
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~--~~~~~~-----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   74 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKI--IEIEWK-----NHKIIDMPGFGFMMGLPKEVQERIKDEIVH   74 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSC--EEEEET-----TEEEEECCCBSCCTTSCHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCcccee--EEEecC-----CEEEEECCCccccccCCHHHHHHHHHHHHH
Confidence            5899999999999999999999887655554433322  222222     588999999           6777777777


Q ss_pred             cccC-ccEEEEEEeCCCHHhHHHH-HHHHHH---------HHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCC
Q 028986          103 YYRG-AAVAVVVYDITSPDSFNKA-QYWVKE---------LQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGM  171 (200)
Q Consensus       103 ~~~~-~d~~i~v~d~~~~~s~~~~-~~~~~~---------i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~  171 (200)
                      +++. ++++++++++.+..+++.+ ..|...         +......++|+++|+||+|+....   .++..+++..+++
T Consensus        75 ~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~  151 (190)
T 2cxx_A           75 FIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV---QEVINFLAEKFEV  151 (190)
T ss_dssp             HHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH---HHHHHHHHHHHTC
T ss_pred             HHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH---HHHHHHHHHHhhh
Confidence            7776 6666666666656666555 555432         222224578999999999987654   5567788888876


Q ss_pred             e-------EEEecCCCCCCHHHHHHHHHHhhccc
Q 028986          172 F-------FIETSAKTADNINQLFEVLITCTSSY  198 (200)
Q Consensus       172 ~-------~~~~S~~~~~~i~~~~~~i~~~~~~~  198 (200)
                      +       ++++||++|.|++++|++|.+.+.+.
T Consensus       152 ~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~  185 (190)
T 2cxx_A          152 PLSEIDKVFIPISAKFGDNIERLKNRIFEVIRER  185 (190)
T ss_dssp             CGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred             hhhccCCcEEEEecCCCCCHHHHHHHHHHhcchh
Confidence            4       79999999999999999999988764

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.94  E-value=5.1e-27  Score=166.31  Aligned_cols=157  Identities=19%  Similarity=0.185  Sum_probs=118.1

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhh------hccccccc
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYA------ALAPLYYR  105 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~------~~~~~~~~  105 (200)
                      +.++|+++|++|||||||+++|++..+.....++.+.+.....+...+   ..+.+|||||++.+.      ..+..++.
T Consensus         6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   82 (188)
T 2wjg_A            6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG---EKFKVVDLPGVYSLTANSIDEIIARDYII   82 (188)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT---EEEEEEECCCCSCCSSSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC---cEEEEEECCCcCccccccHHHHHHHHHHh
Confidence            568999999999999999999998654333333334444444444432   689999999987653      33444553


Q ss_pred             --CccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCC
Q 028986          106 --GAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADN  183 (200)
Q Consensus       106 --~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~  183 (200)
                        .+|++++|+|.++   ++....|+..+..   .+.|+++|+||+|+.....+. .+..++++.++++++++|++++.|
T Consensus        83 ~~~~~~~i~v~d~~~---~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~  155 (188)
T 2wjg_A           83 NEKPDLVVNIVDATA---LERNLYLTLQLME---MGANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKKMG  155 (188)
T ss_dssp             HHCCSEEEEEEEGGG---HHHHHHHHHHHHT---TTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGTBS
T ss_pred             ccCCCEEEEEecchh---HHHHHHHHHHHHh---cCCCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEEEEecCCCC
Confidence              5899999999876   4455667766654   478999999999986544333 356778888899999999999999


Q ss_pred             HHHHHHHHHHhhccc
Q 028986          184 INQLFEVLITCTSSY  198 (200)
Q Consensus       184 i~~~~~~i~~~~~~~  198 (200)
                      ++++|++|.+.+.+.
T Consensus       156 v~~l~~~i~~~~~~~  170 (188)
T 2wjg_A          156 IEELKKAISIAVKDK  170 (188)
T ss_dssp             HHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999999988764

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.94  E-value=1.8e-27  Score=179.96  Aligned_cols=156  Identities=18%  Similarity=0.203  Sum_probs=117.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCC---CCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhh---cccccccCcc
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQFDP---TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAA---LAPLYYRGAA  108 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~---~~~~~~~~~d  108 (200)
                      ||+++|+.|||||||++++.+...+.   ...+|.+.++..  +   +. .+++++|||+|++++..   .+..++++++
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~--v---~~-~v~LqIWDTAGQErf~~~~l~~~~yyr~a~   74 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH--F---ST-LIDLAVMELPGQLNYFEPSYDSERLFKSVG   74 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE--E---CS-SSCEEEEECCSCSSSCCCSHHHHHHHTTCS
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE--E---cc-EEEEEEEECCCchhccchhhhhhhhccCCC
Confidence            68999999999999999888664322   244566655542  2   22 27899999999999864   3578899999


Q ss_pred             EEEEEEeCCCH--HhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCC-------CcCCHHHHHHHHHH----cCCeEEE
Q 028986          109 VAVVVYDITSP--DSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK-------REVPAQDGIEYAEK----NGMFFIE  175 (200)
Q Consensus       109 ~~i~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~-------~~~~~~~~~~~~~~----~~~~~~~  175 (200)
                      ++|+|||++++  +....+..|+..+... .+++|+++++||+|+...       +++..++.+++++.    +++.+++
T Consensus        75 ~~IlV~Ditd~~~~~~~~l~~~l~~~~~~-~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~e  153 (331)
T 3r7w_B           75 ALVYVIDSQDEYINAITNLAMIIEYAYKV-NPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYL  153 (331)
T ss_dssp             EEEEECCCSSCTTHHHHHHHHHHHHHHHH-CTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEEC
T ss_pred             EEEEEEECCchHHHHHHHHHHHHHHHhhc-CCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEE
Confidence            99999999997  3333334445555444 468999999999999764       24555566667764    5789999


Q ss_pred             ecCCCCCCHHHHHHHHHHhhccc
Q 028986          176 TSAKTADNINQLFEVLITCTSSY  198 (200)
Q Consensus       176 ~S~~~~~~i~~~~~~i~~~~~~~  198 (200)
                      +||++ .+|.++|..|++.+.+.
T Consensus       154 TSAkd-~nV~eAFs~iv~~li~~  175 (331)
T 3r7w_B          154 TSIFD-HSIYEAFSRIVQKLIPE  175 (331)
T ss_dssp             CCSSS-SHHHHHHHHHHTTSSTT
T ss_pred             eccCC-CcHHHHHHHHHHHHHhh
Confidence            99998 58999999998877543

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.94  E-value=1.2e-26  Score=160.26  Aligned_cols=150  Identities=19%  Similarity=0.140  Sum_probs=104.1

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcCCCCC-CCccccceeEEEEEEEecCCcEEEEEEEeCCChhh-------hhhccccccc
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRGQFDP-TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQER-------YAALAPLYYR  105 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-------~~~~~~~~~~  105 (200)
                      .||+++|++|+|||||+++|.+..+.. ...+....+.....+...+   ..+.+||+||...       +...+..+++
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~   78 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDR---GRFLLVDTGGLWSGDKWEKKIQEKVDRALE   78 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETT---EEEEEEECGGGCSSSSCCHHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCC---ceEEEEECCCCCCccchHHHHHHHHHHHHH
Confidence            589999999999999999999976432 2222223333333444432   4789999999875       3455666788


Q ss_pred             CccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCC-eEEEecCCCCCCH
Q 028986          106 GAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGM-FFIETSAKTADNI  184 (200)
Q Consensus       106 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~i  184 (200)
                      .+|++++|+|++++.+... ..+...+..   .+.|+++|+||+|+....    +++.+++ .+++ +++++||+++.|+
T Consensus        79 ~~~~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~p~ilv~nK~Dl~~~~----~~~~~~~-~~~~~~~~~~Sa~~~~gv  149 (161)
T 2dyk_A           79 DAEVVLFAVDGRAELTQAD-YEVAEYLRR---KGKPVILVATKVDDPKHE----LYLGPLY-GLGFGDPIPTSSEHARGL  149 (161)
T ss_dssp             TCSEEEEEEESSSCCCHHH-HHHHHHHHH---HTCCEEEEEECCCSGGGG----GGCGGGG-GGSSCSCEECBTTTTBSH
T ss_pred             hCCEEEEEEECCCcccHhH-HHHHHHHHh---cCCCEEEEEECcccccch----HhHHHHH-hCCCCCeEEEecccCCCh
Confidence            9999999999998633321 122222332   368899999999986542    2334444 5677 7999999999999


Q ss_pred             HHHHHHHHHhh
Q 028986          185 NQLFEVLITCT  195 (200)
Q Consensus       185 ~~~~~~i~~~~  195 (200)
                      +++|++|.+.+
T Consensus       150 ~~l~~~l~~~l  160 (161)
T 2dyk_A          150 EELLEAIWERL  160 (161)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHhC
Confidence            99999999875

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.94  E-value=1.4e-25  Score=170.50  Aligned_cols=164  Identities=15%  Similarity=0.095  Sum_probs=123.1

Q ss_pred             CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCcccccee-EEEEEEEecCCcEEEEEEEeCCChhh----------hh
Q 028986           29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGAS-FLSQTIALQDSTTVKFEIWDTAGQER----------YA   97 (200)
Q Consensus        29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~----------~~   97 (200)
                      +....-.|+|+|.+|||||||+|+|++..+.........+. ........  ....++.+|||||...          +.
T Consensus         6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~--~~~~~i~lvDTPG~~~~~~~~~l~~~~~   83 (308)
T 3iev_A            6 HHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNI--PNEAQIIFLDTPGIYEPKKSDVLGHSMV   83 (308)
T ss_dssp             -CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEE--TTTEEEEEEECCCCCCCCTTCHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEec--CCCCeEEEEECcCCCccccchhHHHHHH
Confidence            34556689999999999999999999987654322221111 11112222  2126899999999733          33


Q ss_pred             hcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcC--CeEEE
Q 028986           98 ALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNG--MFFIE  175 (200)
Q Consensus        98 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~  175 (200)
                      ..+..++..+|++++|+|++++.+......|+..+..   .+.|+++|+||+|+........+....+...++  .++++
T Consensus        84 ~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~---~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~  160 (308)
T 3iev_A           84 EIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP---LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVP  160 (308)
T ss_dssp             HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG---GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEE
T ss_pred             HHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh---cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEE
Confidence            5666778899999999999998777777777777765   368999999999997455555666677777765  68999


Q ss_pred             ecCCCCCCHHHHHHHHHHhhcc
Q 028986          176 TSAKTADNINQLFEVLITCTSS  197 (200)
Q Consensus       176 ~S~~~~~~i~~~~~~i~~~~~~  197 (200)
                      +||++|.|+++++++|.+.+.+
T Consensus       161 vSA~~g~gv~~L~~~l~~~l~~  182 (308)
T 3iev_A          161 ISALKGANLDELVKTILKYLPE  182 (308)
T ss_dssp             CBTTTTBSHHHHHHHHHHHSCB
T ss_pred             EeCCCCCCHHHHHHHHHHhCcc
Confidence            9999999999999999998865

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.94  E-value=5.5e-26  Score=161.65  Aligned_cols=159  Identities=19%  Similarity=0.241  Sum_probs=111.6

Q ss_pred             CCCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCC----------hhhhh
Q 028986           28 DAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAG----------QERYA   97 (200)
Q Consensus        28 ~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g----------~~~~~   97 (200)
                      .+....++|+|+|++|+|||||+++|++..... ..++.+.+........ +   ..+.+|||||          ++.+.
T Consensus        18 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~t~~~~~~~~-~---~~~~i~Dt~G~~~~~~~~~~~~~~~   92 (195)
T 3pqc_A           18 YPPPLKGEVAFVGRSNVGKSSLLNALFNRKIAF-VSKTPGKTRSINFYLV-N---SKYYFVDLPGYGYAKVSKKERMLWK   92 (195)
T ss_dssp             CCCCTTCEEEEEEBTTSSHHHHHHHHHTSCCSC-CCSSCCCCCCEEEEEE-T---TTEEEEECCCBSSSCCCHHHHHHHH
T ss_pred             CCCCCCeEEEEECCCCCCHHHHHHHHHcCcccc-ccCCCCCccCeEEEEE-C---CcEEEEECCCCccccCChhhHHHHH
Confidence            344667899999999999999999999987432 2333333332222222 2   2478999999          66677


Q ss_pred             hcccccccCc---cEEEEEEeCCCHHhH--HHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCc--CCHHHHHHHHHHc-
Q 028986           98 ALAPLYYRGA---AVAVVVYDITSPDSF--NKAQYWVKELQKHGSPDIVMALVGNKADLHEKRE--VPAQDGIEYAEKN-  169 (200)
Q Consensus        98 ~~~~~~~~~~---d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~--~~~~~~~~~~~~~-  169 (200)
                      ..+..+++.+   |++++|+|+++..+.  ..+..|+.   ..   +.|+++|+||+|+....+  ...+++.+++... 
T Consensus        93 ~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~---~~---~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~  166 (195)
T 3pqc_A           93 RLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMK---SL---NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYG  166 (195)
T ss_dssp             HHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHH---HT---TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSC
T ss_pred             HHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHH---Hc---CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcC
Confidence            7777776655   999999999875332  33333333   22   689999999999865432  2234445555553 


Q ss_pred             CCeEEEecCCCCCCHHHHHHHHHHhhcc
Q 028986          170 GMFFIETSAKTADNINQLFEVLITCTSS  197 (200)
Q Consensus       170 ~~~~~~~S~~~~~~i~~~~~~i~~~~~~  197 (200)
                      .++++++||+++.|++++|++|.+.+.+
T Consensus       167 ~~~~~~~Sa~~~~gv~~l~~~l~~~l~~  194 (195)
T 3pqc_A          167 EYTIIPTSSVTGEGISELLDLISTLLKE  194 (195)
T ss_dssp             CSCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHhhc
Confidence            4689999999999999999999998875

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.94  E-value=8.2e-27  Score=189.58  Aligned_cols=166  Identities=20%  Similarity=0.346  Sum_probs=125.2

Q ss_pred             CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEE------EEec-CCcEEEEEEEeCCChhhhhhccc
Q 028986           29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQT------IALQ-DSTTVKFEIWDTAGQERYAALAP  101 (200)
Q Consensus        29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~------~~~~-~~~~~~~~l~D~~g~~~~~~~~~  101 (200)
                      .....+||+++|.+|||||||+++|++..+...+.++.+..+....      +.+. ++..+.+.+||+||++.+.....
T Consensus        37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~  116 (535)
T 3dpu_A           37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ  116 (535)
T ss_dssp             BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence            3467899999999999999999999998887777777777665442      1111 22347899999999999999999


Q ss_pred             ccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCC
Q 028986          102 LYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTA  181 (200)
Q Consensus       102 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~  181 (200)
                      .+++.+|++|+|+|+++.   +.+..|+..+.... .+.|+++|+||+|+...+.+..++..+++...+++++++||+++
T Consensus       117 ~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~-~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g  192 (535)
T 3dpu_A          117 FFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYG-GKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNG  192 (535)
T ss_dssp             HHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHS-SSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC---
T ss_pred             HHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhC-CCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCcc
Confidence            999999999999999865   45577888887763 47899999999999887777888888888888999999999999


Q ss_pred             CCHHHHHHHHHHhhccc
Q 028986          182 DNINQLFEVLITCTSSY  198 (200)
Q Consensus       182 ~~i~~~~~~i~~~~~~~  198 (200)
                      .|+++++++|.+.+.+.
T Consensus       193 ~gi~eL~~~l~~~~~~~  209 (535)
T 3dpu_A          193 DGVESIAKSLKSAVLHP  209 (535)
T ss_dssp             --CTTHHHHHHHHHTCT
T ss_pred             cCHHHHHHHHHHHHhcc
Confidence            99999999999987653

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.94  E-value=4.3e-26  Score=169.24  Aligned_cols=156  Identities=19%  Similarity=0.193  Sum_probs=114.3

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhc------ccccc
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAAL------APLYY  104 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~------~~~~~  104 (200)
                      .+.++|+++|++|||||||+|+|++..+.....+..+.......+...  . ..+.+||+||...+...      ...++
T Consensus         3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~--~-~~~~l~DtpG~~~~~~~~~~e~v~~~~~   79 (258)
T 3a1s_A            3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYK--G-YTINLIDLPGTYSLGYSSIDEKIARDYL   79 (258)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEET--T-EEEEEEECCCCSSCCSSSHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEEC--C-eEEEEEECCCcCccCCCCHHHHHHHHHH
Confidence            457899999999999999999999976532222323333323333332  2 68999999998665432      23444


Q ss_pred             --cCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCC
Q 028986          105 --RGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTAD  182 (200)
Q Consensus       105 --~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~  182 (200)
                        ..+|++++|+|+++.++.   ..|...+..   .++|+++|+||+|+...+.+.. ...++++.++++++++||+++.
T Consensus        80 ~~~~~d~ii~V~D~t~~~~~---~~~~~~l~~---~~~pvilv~NK~Dl~~~~~i~~-~~~~l~~~lg~~vi~~SA~~g~  152 (258)
T 3a1s_A           80 LKGDADLVILVADSVNPEQS---LYLLLEILE---MEKKVILAMTAIDEAKKTGMKI-DRYELQKHLGIPVVFTSSVTGE  152 (258)
T ss_dssp             HHSCCSEEEEEEETTSCHHH---HHHHHHHHT---TTCCEEEEEECHHHHHHTTCCB-CHHHHHHHHCSCEEECCTTTCT
T ss_pred             hhcCCCEEEEEeCCCchhhH---HHHHHHHHh---cCCCEEEEEECcCCCCccchHH-HHHHHHHHcCCCEEEEEeeCCc
Confidence              579999999999986543   235555543   3789999999999865444433 3677888899999999999999


Q ss_pred             CHHHHHHHHHHhhc
Q 028986          183 NINQLFEVLITCTS  196 (200)
Q Consensus       183 ~i~~~~~~i~~~~~  196 (200)
                      |++++|++|.+.+.
T Consensus       153 gi~el~~~i~~~~~  166 (258)
T 3a1s_A          153 GLEELKEKIVEYAQ  166 (258)
T ss_dssp             THHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhh
Confidence            99999999998765

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.94  E-value=1.3e-26  Score=162.25  Aligned_cols=155  Identities=22%  Similarity=0.228  Sum_probs=109.6

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHcCCCCC-CCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhh--------cccc
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDP-TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAA--------LAPL  102 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--------~~~~  102 (200)
                      ..++|+|+|++|+|||||+++|.+..... ...+....++....+.+.+   ..+.+|||||+++...        ....
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~l~Dt~G~~~~~~~~~~~~~~~~~~   79 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG---MPLHIIDTAGLREASDEVERIGIERAWQ   79 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT---EEEEEEECCCCSCCSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECC---eEEEEEECCCcccchhHHHHHHHHHHHH
Confidence            35789999999999999999999875422 1222333334444455533   4689999999753211        1123


Q ss_pred             cccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCC
Q 028986          103 YYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTAD  182 (200)
Q Consensus       103 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~  182 (200)
                      +++.+|++++|+|++++.+++. ..|+..+......++|+++|+||+|+.....       .++...+++++++||+++.
T Consensus        80 ~~~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-------~~~~~~~~~~~~~SA~~g~  151 (172)
T 2gj8_A           80 EIEQADRVLFMVDGTTTDAVDP-AEIWPEFIARLPAKLPITVVRNKADITGETL-------GMSEVNGHALIRLSARTGE  151 (172)
T ss_dssp             HHHTCSEEEEEEETTTCCCCSH-HHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-------EEEEETTEEEEECCTTTCT
T ss_pred             HHHhCCEEEEEEECCCCCCHHH-HHHHHHHHHhcccCCCEEEEEECccCCcchh-------hhhhccCCceEEEeCCCCC
Confidence            5788999999999998877653 4677777766556799999999999853211       1112246789999999999


Q ss_pred             CHHHHHHHHHHhhcc
Q 028986          183 NINQLFEVLITCTSS  197 (200)
Q Consensus       183 ~i~~~~~~i~~~~~~  197 (200)
                      |++++|++|.+.+..
T Consensus       152 gv~~l~~~l~~~~~~  166 (172)
T 2gj8_A          152 GVDVLRNHLKQSMGF  166 (172)
T ss_dssp             THHHHHHHHHHHC--
T ss_pred             CHHHHHHHHHHHhhh
Confidence            999999999987653

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.93  E-value=8.4e-26  Score=164.25  Aligned_cols=166  Identities=11%  Similarity=0.093  Sum_probs=109.9

Q ss_pred             CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCC----------hhhhhh
Q 028986           29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAG----------QERYAA   98 (200)
Q Consensus        29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g----------~~~~~~   98 (200)
                      +....++|+|+|.+|+|||||+++|++...........+.+...............+.+|||||          ++.+..
T Consensus        25 ~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~  104 (223)
T 4dhe_A           25 PPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQ  104 (223)
T ss_dssp             CCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHH
T ss_pred             CCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHH
Confidence            3456789999999999999999999997632222222222222222333222235789999999          445555


Q ss_pred             cccccccC---ccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCC--HHHHHHHHHH-----
Q 028986           99 LAPLYYRG---AAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVP--AQDGIEYAEK-----  168 (200)
Q Consensus        99 ~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~-----  168 (200)
                      .+..++..   +|++++|+|++++.+. ....|+..+..   .+.|+++|+||+|+....+..  .+...+....     
T Consensus       105 ~~~~~~~~~~~~d~vi~v~d~~~~~~~-~~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~  180 (223)
T 4dhe_A          105 LLSSYLQTRPQLCGMILMMDARRPLTE-LDRRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAG  180 (223)
T ss_dssp             HHHHHHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhcCcCcCEEEEEEeCCCCCCH-HHHHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcc
Confidence            55566555   8889999999875332 22344455544   468899999999986543311  1122222222     


Q ss_pred             --cCCeEEEecCCCCCCHHHHHHHHHHhhccc
Q 028986          169 --NGMFFIETSAKTADNINQLFEVLITCTSSY  198 (200)
Q Consensus       169 --~~~~~~~~S~~~~~~i~~~~~~i~~~~~~~  198 (200)
                        .+++++++||+++.|+++++++|.+.+.+.
T Consensus       181 ~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~  212 (223)
T 4dhe_A          181 YAGKLTVQLFSALKRTGLDDAHALIESWLRPA  212 (223)
T ss_dssp             CCSCEEEEEEBTTTTBSHHHHHHHHHHHHC--
T ss_pred             cCCCCeEEEeecCCCcCHHHHHHHHHHhcCcc
Confidence              456899999999999999999999988653

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.92  E-value=1.8e-25  Score=166.81  Aligned_cols=153  Identities=17%  Similarity=0.174  Sum_probs=112.1

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhh------hccccccc-
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYA------ALAPLYYR-  105 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~------~~~~~~~~-  105 (200)
                      .++|+++|++|||||||+|+|++........+  +.+.......+..  ...+.+|||||+..+.      ..+..++. 
T Consensus         3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~p--g~tv~~~~~~~~~--~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~   78 (272)
T 3b1v_A            3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWP--GVTVERKSGLVKK--NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS   78 (272)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSS--CCCCSCEEEECTT--CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCCCCcccCCC--CCcEEEEEEEEec--CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence            57999999999999999999998753322222  2222222333322  3579999999987654      33444554 


Q ss_pred             -CccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCH
Q 028986          106 -GAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNI  184 (200)
Q Consensus       106 -~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i  184 (200)
                       .+|++++|+|+++.+..   ..|...+.+   .++|+++|+||+|+...+.+. .....++..++++++++||++|.|+
T Consensus        79 ~~~d~vi~V~D~t~~e~~---~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi  151 (272)
T 3b1v_A           79 QRADSILNVVDATNLERN---LYLTTQLIE---TGIPVTIALNMIDVLDGQGKK-INVDKLSYHLGVPVVATSALKQTGV  151 (272)
T ss_dssp             TCCSEEEEEEEGGGHHHH---HHHHHHHHH---TCSCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBTTTTBSH
T ss_pred             CCCCEEEEEecCCchHhH---HHHHHHHHh---cCCCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCCEEEEEccCCCCH
Confidence             69999999999986543   345555554   378999999999986443333 3457778888999999999999999


Q ss_pred             HHHHHHHHHhhc
Q 028986          185 NQLFEVLITCTS  196 (200)
Q Consensus       185 ~~~~~~i~~~~~  196 (200)
                      +++|++|.+.+.
T Consensus       152 ~el~~~i~~~~~  163 (272)
T 3b1v_A          152 DQVVKKAAHTTT  163 (272)
T ss_dssp             HHHHHHHHHSCT
T ss_pred             HHHHHHHHHHHh
Confidence            999999998764

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.92  E-value=2.7e-26  Score=166.35  Aligned_cols=146  Identities=14%  Similarity=0.224  Sum_probs=103.6

Q ss_pred             CCCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCC---CccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccc
Q 028986           28 DAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPT---SKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYY  104 (200)
Q Consensus        28 ~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~  104 (200)
                      ......++|+|+|++|+|||||+++|.+..+...   +.++.+..+          ....+.+||+||++.+...+..++
T Consensus         7 ~~~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~----------~~~~~~l~Dt~G~~~~~~~~~~~~   76 (218)
T 1nrj_B            7 KQKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY----------DGSGVTLVDFPGHVKLRYKLSDYL   76 (218)
T ss_dssp             ---CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG----------GGSSCEEEECCCCGGGTHHHHHHH
T ss_pred             CccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe----------eCceEEEEECCCcHHHHHHHHHHH
Confidence            3456678999999999999999999999876442   222222111          225789999999998888888888


Q ss_pred             cC----ccEEEEEEeCC-CHHhHHHHHHHHHHHHHc----CCCCCeEEEEEeCCCCCCCCcCC------HHHHHHHHHHc
Q 028986          105 RG----AAVAVVVYDIT-SPDSFNKAQYWVKELQKH----GSPDIVMALVGNKADLHEKREVP------AQDGIEYAEKN  169 (200)
Q Consensus       105 ~~----~d~~i~v~d~~-~~~s~~~~~~~~~~i~~~----~~~~~p~iiv~nK~D~~~~~~~~------~~~~~~~~~~~  169 (200)
                      +.    +|++|+|+|++ ++.++..+..|+..+...    ...++|+++|+||+|+.......      .+++..++...
T Consensus        77 ~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~  156 (218)
T 1nrj_B           77 KTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERR  156 (218)
T ss_dssp             HHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHH
Confidence            76    89999999999 888888888887776553    34689999999999997765433      34455666666


Q ss_pred             CCeEEEecCCCCCC
Q 028986          170 GMFFIETSAKTADN  183 (200)
Q Consensus       170 ~~~~~~~S~~~~~~  183 (200)
                      ++.++++|++++.+
T Consensus       157 ~~~~~~~Sa~~~~~  170 (218)
T 1nrj_B          157 KKSLNEVERKINEE  170 (218)
T ss_dssp             HHHHHC--------
T ss_pred             hccccccccccccc
Confidence            67788888887764

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.92  E-value=7.7e-26  Score=167.65  Aligned_cols=151  Identities=18%  Similarity=0.154  Sum_probs=110.2

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhh----------ccccc
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAA----------LAPLY  103 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~----------~~~~~  103 (200)
                      .+|+++|.+|||||||+|+|++........+..+.+.....+...+   ..+.+|||||...+..          ....+
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~---~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~   78 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGE---HLIEITDLPGVYSLVANAEGISQDEQIAAQS   78 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETT---EEEEEEECCCCSSCC------CHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECC---eEEEEEeCCCcccccccccCCCHHHHHHHHH
Confidence            3799999999999999999999754332333344444444444433   4799999999765443          34455


Q ss_pred             c--cCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCC
Q 028986          104 Y--RGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTA  181 (200)
Q Consensus       104 ~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~  181 (200)
                      +  ..+|++|+|+|+++.+....+.   ..+.   ..+.|+++|+||+|+...+.... ....+...++++++++||++|
T Consensus        79 ~~~~~~d~vi~VvDas~~~~~~~l~---~~l~---~~~~pvilv~NK~Dl~~~~~~~~-~~~~l~~~lg~~vi~~SA~~g  151 (256)
T 3iby_A           79 VIDLEYDCIINVIDACHLERHLYLT---SQLF---ELGKPVVVALNMMDIAEHRGISI-DTEKLESLLGCSVIPIQAHKN  151 (256)
T ss_dssp             HHHSCCSEEEEEEEGGGHHHHHHHH---HHHT---TSCSCEEEEEECHHHHHHTTCEE-CHHHHHHHHCSCEEECBGGGT
T ss_pred             HhhCCCCEEEEEeeCCCchhHHHHH---HHHH---HcCCCEEEEEEChhcCCcCCcHH-HHHHHHHHcCCCEEEEECCCC
Confidence            6  7899999999999865444333   2232   34789999999999865433322 245577778999999999999


Q ss_pred             CCHHHHHHHHHHh
Q 028986          182 DNINQLFEVLITC  194 (200)
Q Consensus       182 ~~i~~~~~~i~~~  194 (200)
                      .|+++++++|.+.
T Consensus       152 ~gi~el~~~i~~~  164 (256)
T 3iby_A          152 IGIPALQQSLLHC  164 (256)
T ss_dssp             BSHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHhh
Confidence            9999999999876

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.92  E-value=6.6e-26  Score=169.73  Aligned_cols=156  Identities=15%  Similarity=0.137  Sum_probs=112.1

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhh----------ccc
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAA----------LAP  101 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~----------~~~  101 (200)
                      +.++|+++|.+|+|||||+|+|++..+.....+..+.+.....+...+   ..+.+|||||...+..          .+.
T Consensus         2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~---~~~~liDtpG~~~~~~~~~~~~~~e~i~~   78 (274)
T 3i8s_A            2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD---HQVTLVDLPGTYSLTTISSQTSLDEQIAC   78 (274)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS---CEEEEEECCCCSCSCC----CCHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC---CceEEEECcCCCccccccccCCHHHHHHH
Confidence            368999999999999999999999764333333333444444444432   4688999999765442          122


Q ss_pred             ccc--cCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCC
Q 028986          102 LYY--RGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAK  179 (200)
Q Consensus       102 ~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~  179 (200)
                      .++  ..+|++++|+|+++.+....   |...+.+.   ++|+++|+||+|+...+... .....+...++++++++||+
T Consensus        79 ~~~~~~~~d~ii~VvD~~~~~~~~~---~~~~l~~~---~~p~ivv~NK~Dl~~~~~~~-~~~~~l~~~lg~~~i~~SA~  151 (274)
T 3i8s_A           79 HYILSGDADLLINVVDASNLERNLY---LTLQLLEL---GIPCIVALNMLDIAEKQNIR-IEIDALSARLGCPVIPLVST  151 (274)
T ss_dssp             HHHHHTCCSEEEEEEEGGGHHHHHH---HHHHHHHH---TCCEEEEEECHHHHHHTTEE-ECHHHHHHHHTSCEEECCCG
T ss_pred             HHHhhcCCCEEEEEecCCChHHHHH---HHHHHHhc---CCCEEEEEECccchhhhhHH-HHHHHHHHhcCCCEEEEEcC
Confidence            222  68999999999998654443   33334433   68999999999985443322 23466777889999999999


Q ss_pred             CCCCHHHHHHHHHHhhcc
Q 028986          180 TADNINQLFEVLITCTSS  197 (200)
Q Consensus       180 ~~~~i~~~~~~i~~~~~~  197 (200)
                      +|.|+++++++|.+.+.+
T Consensus       152 ~g~gi~el~~~i~~~~~~  169 (274)
T 3i8s_A          152 RGRGIEALKLAIDRYKAN  169 (274)
T ss_dssp             GGHHHHHHHHHHHTCCCC
T ss_pred             CCCCHHHHHHHHHHHHhc
Confidence            999999999999887653

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.92  E-value=5.8e-25  Score=164.51  Aligned_cols=157  Identities=20%  Similarity=0.194  Sum_probs=114.1

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhh------cccccc-
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAA------LAPLYY-  104 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~------~~~~~~-  104 (200)
                      +.++|+++|++|||||||+++|++..+.....++.+.+.....+...+   ..+.+||+||...+..      .+..++ 
T Consensus         2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~---~~~~l~DtpG~~~~~~~~~~~~~~~~~~~   78 (271)
T 3k53_A            2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYRE---KEFLVVDLPGIYSLTAHSIDELIARNFIL   78 (271)
T ss_dssp             CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETT---EEEEEEECCCCSCCCSSCHHHHHHHHHHH
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECC---ceEEEEeCCCccccccCCHHHHHHHHhhh
Confidence            357999999999999999999999765333334444444444444433   4699999999765544      344444 


Q ss_pred             -cCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCC
Q 028986          105 -RGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADN  183 (200)
Q Consensus       105 -~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~  183 (200)
                       .++|++++|+|+++..   ....|...+....  ..|+++|+||+|+...+..... ...+.+.++++++++|+++|.|
T Consensus        79 ~~~~d~vi~v~D~~~~~---~~~~~~~~~~~~~--~~p~ilv~NK~Dl~~~~~~~~~-~~~l~~~lg~~~~~~Sa~~g~g  152 (271)
T 3k53_A           79 DGNADVIVDIVDSTCLM---RNLFLTLELFEME--VKNIILVLNKFDLLKKKGAKID-IKKMRKELGVPVIPTNAKKGEG  152 (271)
T ss_dssp             TTCCSEEEEEEEGGGHH---HHHHHHHHHHHTT--CCSEEEEEECHHHHHHHTCCCC-HHHHHHHHSSCEEECBGGGTBT
T ss_pred             ccCCcEEEEEecCCcch---hhHHHHHHHHhcC--CCCEEEEEEChhcCcccccHHH-HHHHHHHcCCcEEEEEeCCCCC
Confidence             6799999999999863   2233444444331  2899999999998544333332 5677778899999999999999


Q ss_pred             HHHHHHHHHHhhcc
Q 028986          184 INQLFEVLITCTSS  197 (200)
Q Consensus       184 i~~~~~~i~~~~~~  197 (200)
                      +++++++|.+.+..
T Consensus       153 i~~l~~~i~~~~~~  166 (271)
T 3k53_A          153 VEELKRMIALMAEG  166 (271)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999988754

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.91  E-value=1.2e-25  Score=176.66  Aligned_cols=165  Identities=16%  Similarity=0.150  Sum_probs=115.8

Q ss_pred             cCCCCCCCCceeeEEEEcCCCCcHHHHHHHHHcCCCCC-CCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhc--
Q 028986           23 NAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDP-TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAAL--   99 (200)
Q Consensus        23 ~~~~~~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--   99 (200)
                      +.++..+....++|+|+|+.++|||||+++|++..+.. ...+..+.+.....+.+...  ..+.+|||||+.++...  
T Consensus        24 msm~~~~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~l~liDTpG~~d~~~l~~  101 (423)
T 3qq5_A           24 YTMRLPDAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI--GPVTLVDTPGLDDVGELGR  101 (423)
T ss_dssp             CCCCC---CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT--EEEEEEECSSTTCCCTTCC
T ss_pred             CccccCCCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC--CeEEEEECcCCCcccchhH
Confidence            44555566778999999999999999999999876532 22222333333444444333  37899999998766544  


Q ss_pred             -----ccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEE
Q 028986          100 -----APLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFI  174 (200)
Q Consensus       100 -----~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  174 (200)
                           +..++..+|++|+|+|++..   +....|+..+.+.   ++|+++|+||+|+......  +...+++..++++++
T Consensus       102 ~~~~~~~~~l~~aD~vllVvD~~~~---~~~~~~l~~l~~~---~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~  173 (423)
T 3qq5_A          102 LRVEKARRVFYRADCGILVTDSAPT---PYEDDVVNLFKEM---EIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVL  173 (423)
T ss_dssp             CCHHHHHHHHTSCSEEEEECSSSCC---HHHHHHHHHHHHT---TCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCC
T ss_pred             HHHHHHHHHHhcCCEEEEEEeCCCh---HHHHHHHHHHHhc---CCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEE
Confidence                 23467889999999999433   3345566666655   7889999999999776553  555666667789999


Q ss_pred             EecCCCCCCHHHHHHHHHHhhcc
Q 028986          175 ETSAKTADNINQLFEVLITCTSS  197 (200)
Q Consensus       175 ~~S~~~~~~i~~~~~~i~~~~~~  197 (200)
                      ++||+++.|++++|++|.+.+.+
T Consensus       174 ~vSAktg~gI~eL~~~L~~~l~~  196 (423)
T 3qq5_A          174 LVSALQKKGFDDIGKTISEILPG  196 (423)
T ss_dssp             CCSSCCTTSTTTHHHHHHHHSCC
T ss_pred             EEECCCCCCHHHHHHHHHHhhhh
Confidence            99999999999999999998843

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.91  E-value=3.1e-24  Score=170.42  Aligned_cols=161  Identities=20%  Similarity=0.199  Sum_probs=112.7

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCC-CCCccccceeEEEEEEEecCCcEEEEEEEeCCCh----------hhhhhc
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFD-PTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ----------ERYAAL   99 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~----------~~~~~~   99 (200)
                      +..++|+++|.+|+|||||+|+|++..+. ....+..+.+.....+... +  ..+.+|||||+          +.+...
T Consensus       173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~-~--~~~~l~DT~G~~~~~~~~~~~e~~~~~  249 (436)
T 2hjg_A          173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYN-Q--QEFVIVDTAGMRKKGKVYETTEKYSVL  249 (436)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEET-T--EEEEETTHHHHTCBTTBCCCCSHHHHH
T ss_pred             ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEEC-C--eEEEEEECCCcCcCccccchHHHHHHH
Confidence            45789999999999999999999997653 1122222223323333332 2  36899999997          444433


Q ss_pred             cc-ccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHH-HH----cCCeE
Q 028986          100 AP-LYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYA-EK----NGMFF  173 (200)
Q Consensus       100 ~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~-~~----~~~~~  173 (200)
                      .. .+++.+|++++|+|++++.+.+.. .|+..+..   .+.|+++|+||+|+.+......++..+.. ..    .++++
T Consensus       250 ~~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~  325 (436)
T 2hjg_A          250 RALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPI  325 (436)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCE
T ss_pred             HHHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH---cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCE
Confidence            33 467889999999999998777664 46666654   37899999999999766554333333322 22    36789


Q ss_pred             EEecCCCCCCHHHHHHHHHHhhccc
Q 028986          174 IETSAKTADNINQLFEVLITCTSSY  198 (200)
Q Consensus       174 ~~~S~~~~~~i~~~~~~i~~~~~~~  198 (200)
                      +++||++|.|++++|+.+.+.+.+.
T Consensus       326 ~~~SA~tg~~v~~l~~~i~~~~~~~  350 (436)
T 2hjg_A          326 LFMSALTKKRIHTLMPAIIKASENH  350 (436)
T ss_dssp             EECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred             EEEecccCCCHHHHHHHHHHHHHHh
Confidence            9999999999999999999887653

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.91  E-value=1.9e-24  Score=165.89  Aligned_cols=158  Identities=18%  Similarity=0.154  Sum_probs=115.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhh----hhhcccccc---cCc
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQER----YAALAPLYY---RGA  107 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----~~~~~~~~~---~~~  107 (200)
                      +|+|+|.++||||||+++|++........+..+.......+.+.++  ..+.+||+||..+    +..+...++   ..+
T Consensus       160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~--~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~  237 (342)
T 1lnz_A          160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG--RSFVMADLPGLIEGAHQGVGLGHQFLRHIERT  237 (342)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS--CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred             eeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCC--ceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence            6889999999999999999986532111111111222223444332  3789999999654    222334444   349


Q ss_pred             cEEEEEEeCCC---HHhHHHHHHHHHHHHHcC--CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcC--CeEEEecCCC
Q 028986          108 AVAVVVYDITS---PDSFNKAQYWVKELQKHG--SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNG--MFFIETSAKT  180 (200)
Q Consensus       108 d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~S~~~  180 (200)
                      |++|+|+|+++   +++++.+..|+..+....  ..++|+++|+||+|+....    +...++++.+.  .+++++||++
T Consensus       238 d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~----e~~~~l~~~l~~~~~v~~iSA~t  313 (342)
T 1lnz_A          238 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA----ENLEAFKEKLTDDYPVFPISAVT  313 (342)
T ss_dssp             CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH----HHHHHHHHHCCSCCCBCCCSSCC
T ss_pred             cEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCH----HHHHHHHHHhhcCCCEEEEECCC
Confidence            99999999998   778888888999888764  2579999999999986432    34566666665  6899999999


Q ss_pred             CCCHHHHHHHHHHhhccc
Q 028986          181 ADNINQLFEVLITCTSSY  198 (200)
Q Consensus       181 ~~~i~~~~~~i~~~~~~~  198 (200)
                      +.|+++++++|.+.+.+.
T Consensus       314 g~gi~eL~~~l~~~l~~~  331 (342)
T 1lnz_A          314 REGLRELLFEVANQLENT  331 (342)
T ss_dssp             SSTTHHHHHHHHHHHTSC
T ss_pred             CcCHHHHHHHHHHHHhhC
Confidence            999999999999988764

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.91  E-value=6.3e-24  Score=169.43  Aligned_cols=157  Identities=17%  Similarity=0.135  Sum_probs=98.0

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHcCCCCC-CCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcc--------cc
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDP-TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALA--------PL  102 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~--------~~  102 (200)
                      ..++|+|+|++|+|||||+|+|++..... ...+..+.+.....+.+.+   ..+.+|||||..++...+        ..
T Consensus       232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g---~~l~liDT~G~~~~~~~ve~~gi~~~~~  308 (476)
T 3gee_A          232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK---TMFRLTDTAGLREAGEEIEHEGIRRSRM  308 (476)
T ss_dssp             HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT---EEEEEEC--------------------C
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC---eEEEEEECCCCCcchhHHHHHHHHHHHh
Confidence            45789999999999999999999875322 2222233333333344422   579999999987654333        44


Q ss_pred             cccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCC
Q 028986          103 YYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTAD  182 (200)
Q Consensus       103 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~  182 (200)
                      +++.+|++++|+|++++.+++.+..+...+....  +.|+++|+||+|+......   ....+......+++++||+++.
T Consensus       309 ~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~~~~---~~~~l~~~~~~~~i~vSAktg~  383 (476)
T 3gee_A          309 KMAEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAANADA---LIRAIADGTGTEVIGISALNGD  383 (476)
T ss_dssp             CCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTTTHH---HHHHHHHHHTSCEEECBTTTTB
T ss_pred             hcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCccch---hHHHHHhcCCCceEEEEECCCC
Confidence            6889999999999999877654333333333332  7899999999999765442   2233443324689999999999


Q ss_pred             CHHHHHHHHHHhhc
Q 028986          183 NINQLFEVLITCTS  196 (200)
Q Consensus       183 ~i~~~~~~i~~~~~  196 (200)
                      |+++++++|.+.+.
T Consensus       384 GI~eL~~~i~~~~~  397 (476)
T 3gee_A          384 GIDTLKQHMGDLVK  397 (476)
T ss_dssp             SHHHHHHHHTHHHH
T ss_pred             CHHHHHHHHHHHHh
Confidence            99999999998876

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.91  E-value=8.1e-24  Score=160.15  Aligned_cols=158  Identities=17%  Similarity=0.156  Sum_probs=108.1

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCc-cccceeEEEEEEEecCCcEEEEEEEeCCChhh--------hhhccc
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSK-VTVGASFLSQTIALQDSTTVKFEIWDTAGQER--------YAALAP  101 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--------~~~~~~  101 (200)
                      .+..+|+|+|.+|+|||||+|+|++..+..... +.............   ...++.+|||||...        +.....
T Consensus         5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~---~~~~l~l~DTpG~~~~~~~l~~~~~~~~~   81 (301)
T 1wf3_A            5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTE---GRRQIVFVDTPGLHKPMDALGEFMDQEVY   81 (301)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEE---TTEEEEEEECCCCCCCCSHHHHHHHHHHH
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEe---CCcEEEEecCccccchhhHHHHHHHHHHH
Confidence            345679999999999999999999987653222 11111111111111   226899999999654        445566


Q ss_pred             ccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHc--CCeEEEecCC
Q 028986          102 LYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKN--GMFFIETSAK  179 (200)
Q Consensus       102 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~S~~  179 (200)
                      .+++.+|++++|+|++++.+... ..++..+... ..+.|+++|+||+|+.....    .....+..+  ..+++++||+
T Consensus        82 ~~l~~ad~il~VvD~~~~~~~~~-~~i~~~l~~~-~~~~p~ilV~NK~Dl~~~~~----~~~~~~~~~~~~~~~~~iSA~  155 (301)
T 1wf3_A           82 EALADVNAVVWVVDLRHPPTPED-ELVARALKPL-VGKVPILLVGNKLDAAKYPE----EAMKAYHELLPEAEPRMLSAL  155 (301)
T ss_dssp             HHTSSCSEEEEEEETTSCCCHHH-HHHHHHHGGG-TTTSCEEEEEECGGGCSSHH----HHHHHHHHTSTTSEEEECCTT
T ss_pred             HHHhcCCEEEEEEECCCCCChHH-HHHHHHHHhh-cCCCCEEEEEECcccCCchH----HHHHHHHHhcCcCcEEEEeCC
Confidence            77899999999999997643332 2233445443 24789999999999865432    022333332  3479999999


Q ss_pred             CCCCHHHHHHHHHHhhcc
Q 028986          180 TADNINQLFEVLITCTSS  197 (200)
Q Consensus       180 ~~~~i~~~~~~i~~~~~~  197 (200)
                      ++.|+++++++|.+.+.+
T Consensus       156 ~g~gv~~l~~~l~~~l~~  173 (301)
T 1wf3_A          156 DERQVAELKADLLALMPE  173 (301)
T ss_dssp             CHHHHHHHHHHHHTTCCB
T ss_pred             CCCCHHHHHHHHHHhccc
Confidence            999999999999887643

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.91  E-value=2.8e-23  Score=160.96  Aligned_cols=161  Identities=16%  Similarity=0.153  Sum_probs=116.2

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhh---------hccc
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYA---------ALAP  101 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~---------~~~~  101 (200)
                      ...++|+++|++|||||||+++|.+........+..........+...   ...+.+|||||.....         ....
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~  241 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDG---YFRYQIIDTPGLLDRPISERNEIEKQAIL  241 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEET---TEEEEEEECTTTSSSCSTTSCHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEec---CceEEEEeCCCccccchhhhhHHHHHHHH
Confidence            456799999999999999999999876321111111122222222222   2579999999964321         1122


Q ss_pred             ccccCccEEEEEEeCCCHH--hHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCC
Q 028986          102 LYYRGAAVAVVVYDITSPD--SFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAK  179 (200)
Q Consensus       102 ~~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~  179 (200)
                      .+...+|++++|+|+++..  +++....|+..+..... +.|+++|+||+|+.....  .++...++...+++++++||+
T Consensus       242 ~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~iSA~  318 (357)
T 2e87_A          242 ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVADEEN--IKRLEKFVKEKGLNPIKISAL  318 (357)
T ss_dssp             GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTCCHHH--HHHHHHHHHHTTCCCEECBTT
T ss_pred             HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccCChHH--HHHHHHHHHhcCCCeEEEeCC
Confidence            3445699999999999876  67777888888876533 789999999999865433  244566667788899999999


Q ss_pred             CCCCHHHHHHHHHHhhcc
Q 028986          180 TADNINQLFEVLITCTSS  197 (200)
Q Consensus       180 ~~~~i~~~~~~i~~~~~~  197 (200)
                      +|.|+++++++|.+.+..
T Consensus       319 ~g~gi~~l~~~i~~~l~~  336 (357)
T 2e87_A          319 KGTGIDLVKEEIIKTLRP  336 (357)
T ss_dssp             TTBTHHHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHHH
Confidence            999999999999988754

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.90  E-value=8.4e-24  Score=163.32  Aligned_cols=115  Identities=15%  Similarity=0.179  Sum_probs=89.0

Q ss_pred             EEEEEEeCCChhhhhhcccccccCccEEEEEEeCCC----------HHhHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCC
Q 028986           83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITS----------PDSFNKAQYWVKELQKH-GSPDIVMALVGNKADL  151 (200)
Q Consensus        83 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~D~  151 (200)
                      +.+++||++|++.++..|..++++++++|+|+|+++          ..+++....|+..+... ...++|+++++||+|+
T Consensus       201 ~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~DL  280 (362)
T 1zcb_A          201 VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDL  280 (362)
T ss_dssp             EEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHH
T ss_pred             eEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChhh
Confidence            789999999999999999999999999999999999          67898888888887654 3467999999999998


Q ss_pred             CCCC----------------cCCHHHHHHHHH-----------HcCCeEEEecCCCCCCHHHHHHHHHHhhcc
Q 028986          152 HEKR----------------EVPAQDGIEYAE-----------KNGMFFIETSAKTADNINQLFEVLITCTSS  197 (200)
Q Consensus       152 ~~~~----------------~~~~~~~~~~~~-----------~~~~~~~~~S~~~~~~i~~~~~~i~~~~~~  197 (200)
                      ...+                ....+++.+++.           ..++.++++||+++.||+++|+++.+.+.+
T Consensus       281 ~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~  353 (362)
T 1zcb_A          281 LEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILH  353 (362)
T ss_dssp             HHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             hhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHH
Confidence            5321                255677777652           346789999999999999999999987754

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.90  E-value=6.7e-24  Score=169.37  Aligned_cols=162  Identities=20%  Similarity=0.210  Sum_probs=116.7

Q ss_pred             CCceeeEEEEcCCCCcHHHHHHHHHcCCCC-CCCccccceeEEEEEEEecCCcEEEEEEEeCCC----------hhhhhh
Q 028986           30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFD-PTSKVTVGASFLSQTIALQDSTTVKFEIWDTAG----------QERYAA   98 (200)
Q Consensus        30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g----------~~~~~~   98 (200)
                      ....++|+++|.+++|||||+++|++.... ....+..+.+.....+...+   ..+.+|||||          ++.+..
T Consensus       192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~---~~~~l~DT~G~~~~~~~~~~~e~~~~  268 (456)
T 4dcu_A          192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQ---QEFVIVDTAGMRKKGKVYETTEKYSV  268 (456)
T ss_dssp             CTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETT---EEEEETTGGGTTTBTTBCCCCSHHHH
T ss_pred             ccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECC---ceEEEEECCCCCcCcccchHHHHHHH
Confidence            456789999999999999999999976431 11222222222222333322   3799999999          566665


Q ss_pred             ccc-ccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHc-----CCe
Q 028986           99 LAP-LYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKN-----GMF  172 (200)
Q Consensus        99 ~~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~  172 (200)
                      .+. .+++.+|++++|+|++++.+ +....|...+..   .+.|+++|+||+|+...++...++..+.+...     .++
T Consensus       269 ~~~~~~~~~ad~~llviD~~~~~~-~~~~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (456)
T 4dcu_A          269 LRALKAIDRSEVVAVVLDGEEGII-EQDKRIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAP  344 (456)
T ss_dssp             HHHHHHHHHCSEEEEEEETTTCCC-HHHHHHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSC
T ss_pred             HHHHHHHhhCCEEEEEEeCCCCcC-HHHHHHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCC
Confidence            544 37788999999999998543 233445555554   36899999999999877666667777776654     578


Q ss_pred             EEEecCCCCCCHHHHHHHHHHhhccc
Q 028986          173 FIETSAKTADNINQLFEVLITCTSSY  198 (200)
Q Consensus       173 ~~~~S~~~~~~i~~~~~~i~~~~~~~  198 (200)
                      ++++||++|.|++++|++|.+.+.+.
T Consensus       345 ~~~~SA~~g~gv~~l~~~i~~~~~~~  370 (456)
T 4dcu_A          345 ILFMSALTKKRIHTLMPAIIKASENH  370 (456)
T ss_dssp             EEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred             EEEEcCCCCcCHHHHHHHHHHHHHHh
Confidence            99999999999999999999887543

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.90  E-value=2.6e-23  Score=160.06  Aligned_cols=115  Identities=15%  Similarity=0.271  Sum_probs=97.5

Q ss_pred             EEEEEEeCCChhhhhhcccccccCccEEEEEEeCCC----------HHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCC
Q 028986           83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITS----------PDSFNKAQYWVKELQKHG-SPDIVMALVGNKADL  151 (200)
Q Consensus        83 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~  151 (200)
                      +.+++||++|++.++..|..++++++++|+|+|+++          ..+++....|+..+.... ..++|+++++||+|+
T Consensus       193 ~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~DL  272 (353)
T 1cip_A          193 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL  272 (353)
T ss_dssp             EEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHH
T ss_pred             eeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcCc
Confidence            789999999999999999999999999999999998          456888888888876542 467999999999998


Q ss_pred             CCCC---------------cCCHHHHHHHHH-----------HcCCeEEEecCCCCCCHHHHHHHHHHhhcc
Q 028986          152 HEKR---------------EVPAQDGIEYAE-----------KNGMFFIETSAKTADNINQLFEVLITCTSS  197 (200)
Q Consensus       152 ~~~~---------------~~~~~~~~~~~~-----------~~~~~~~~~S~~~~~~i~~~~~~i~~~~~~  197 (200)
                      ...+               ....+++.+++.           ..++.+++|||+++.||+++|+++.+.+.+
T Consensus       273 ~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~  344 (353)
T 1cip_A          273 FEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIK  344 (353)
T ss_dssp             HHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             hhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHH
Confidence            5322               256778888876           356789999999999999999999988754

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.89  E-value=2.7e-22  Score=157.82  Aligned_cols=166  Identities=16%  Similarity=0.081  Sum_probs=116.0

Q ss_pred             CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEE------------------EEEecCCcEEEEEEEeC
Q 028986           29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQ------------------TIALQDSTTVKFEIWDT   90 (200)
Q Consensus        29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~l~D~   90 (200)
                      ..+..++|+++|++++|||||+++|++........... ......                  ...........+.+|||
T Consensus         4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDt   82 (403)
T 3sjy_A            4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAE-TNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDA   82 (403)
T ss_dssp             CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEE-EEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEEC
T ss_pred             ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccc-cceeeccccccccceecccccccccccccccccceEEEEEC
Confidence            34667899999999999999999999854332111000 000000                  00000112268999999


Q ss_pred             CChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcC--CHHHHHHHHHH
Q 028986           91 AGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREV--PAQDGIEYAEK  168 (200)
Q Consensus        91 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~--~~~~~~~~~~~  168 (200)
                      ||++.+...+...+..+|++++|+|++++.++.....++..+....  ..|+++|+||+|+....+.  ..+++.++...
T Consensus        83 PGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~--~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~  160 (403)
T 3sjy_A           83 PGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEEALSQYRQIKQFTKG  160 (403)
T ss_dssp             CCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHHHHTT
T ss_pred             CCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC--CCCEEEEEECccccchHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999998776666777777666543  2479999999998654321  11222222222


Q ss_pred             c---CCeEEEecCCCCCCHHHHHHHHHHhhcc
Q 028986          169 N---GMFFIETSAKTADNINQLFEVLITCTSS  197 (200)
Q Consensus       169 ~---~~~~~~~S~~~~~~i~~~~~~i~~~~~~  197 (200)
                      .   +++++++||++|.|+++++++|.+.+..
T Consensus       161 ~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~  192 (403)
T 3sjy_A          161 TWAENVPIIPVSALHKINIDSLIEGIEEYIKT  192 (403)
T ss_dssp             STTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             hCCCCCEEEEEECCCCcChHHHHHHHHHhCCC
Confidence            2   5689999999999999999999987643

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.89  E-value=7.5e-22  Score=155.50  Aligned_cols=161  Identities=16%  Similarity=0.154  Sum_probs=106.3

Q ss_pred             CCceeeEEEEcCCCCcHHHHHHHHHcCCC---CCCCcc--ccceeEEEEEEEec------------C--C----cEEEEE
Q 028986           30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQF---DPTSKV--TVGASFLSQTIALQ------------D--S----TTVKFE   86 (200)
Q Consensus        30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~---~~~~~~--~~~~~~~~~~~~~~------------~--~----~~~~~~   86 (200)
                      ++..++|+++|+.++|||||+++|.+...   .....+  |....+....+...            +  +    ....+.
T Consensus         5 r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~   84 (408)
T 1s0u_A            5 SQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVS   84 (408)
T ss_dssp             CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEE
T ss_pred             cCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEE
Confidence            35678999999999999999999996432   222222  33333333332210            1  1    126899


Q ss_pred             EEeCCChhhhhhcccccccCccEEEEEEeCCCH----HhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCc--CCHH
Q 028986           87 IWDTAGQERYAALAPLYYRGAAVAVVVYDITSP----DSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKRE--VPAQ  160 (200)
Q Consensus        87 l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~--~~~~  160 (200)
                      +||+||++.+...+...+..+|++|+|+|++++    .+.+.+.    .+....  ..|+++++||+|+.....  ...+
T Consensus        85 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~----~~~~l~--~~~iivv~NK~Dl~~~~~~~~~~~  158 (408)
T 1s0u_A           85 FVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLM----ALEILG--IDKIIIVQNKIDLVDEKQAEENYE  158 (408)
T ss_dssp             EEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHH----HHHHTT--CCCEEEEEECTTSSCTTTTTTHHH
T ss_pred             EEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHH----HHHHcC--CCeEEEEEEccCCCCHHHHHHHHH
Confidence            999999999988888888899999999999953    4444333    233221  247999999999976543  2345


Q ss_pred             HHHHHHHH---cCCeEEEecCCCCCCHHHHHHHHHHhhc
Q 028986          161 DGIEYAEK---NGMFFIETSAKTADNINQLFEVLITCTS  196 (200)
Q Consensus       161 ~~~~~~~~---~~~~~~~~S~~~~~~i~~~~~~i~~~~~  196 (200)
                      ++.+++..   .+++++++||++|.|+++++++|.+.+.
T Consensus       159 ~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~  197 (408)
T 1s0u_A          159 QIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIP  197 (408)
T ss_dssp             HHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred             HHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence            55666654   3678999999999999999999998664

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.88  E-value=4e-22  Score=146.47  Aligned_cols=164  Identities=14%  Similarity=0.193  Sum_probs=106.0

Q ss_pred             CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCcc--ccceeEEEEEEEecCCcEEEEEEEeCCC-----------hhh
Q 028986           29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKV--TVGASFLSQTIALQDSTTVKFEIWDTAG-----------QER   95 (200)
Q Consensus        29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~D~~g-----------~~~   95 (200)
                      +....++|+|+|++|+|||||+|+|++..+.....+  +.+.......+...+   ..+.+|||||           ...
T Consensus        25 ~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~---~~i~liDTpG~~~~~~~~~~~~~~  101 (239)
T 3lxx_A           25 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE---TELVVVDTPGIFDTEVPNAETSKE  101 (239)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT---EEEEEEECCSCC-----CHHHHHH
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC---ceEEEEECCCccCCCCCHHHHHHH
Confidence            446689999999999999999999999877544433  223333333333322   4789999999           334


Q ss_pred             hhhcccccccCccEEEEEEeCCCHHh--HHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCC------HHHHHHHHH
Q 028986           96 YAALAPLYYRGAAVAVVVYDITSPDS--FNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVP------AQDGIEYAE  167 (200)
Q Consensus        96 ~~~~~~~~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~------~~~~~~~~~  167 (200)
                      +...+..+++.+|++|+|+|++....  ...+..+...+...  ...|+++|+||+|+.....+.      .+.+..+++
T Consensus       102 ~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~--~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~  179 (239)
T 3lxx_A          102 IIRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGER--ARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMD  179 (239)
T ss_dssp             HHHHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHH--HGGGEEEEEECGGGC------------CHHHHHHHH
T ss_pred             HHHHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhh--ccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHH
Confidence            45555566778999999999875422  22223332222221  235899999999986654332      245677888


Q ss_pred             HcCCeEEEecCCCC-----CCHHHHHHHHHHhhcc
Q 028986          168 KNGMFFIETSAKTA-----DNINQLFEVLITCTSS  197 (200)
Q Consensus       168 ~~~~~~~~~S~~~~-----~~i~~~~~~i~~~~~~  197 (200)
                      .++..++.++...+     .++.++++.+.+.+.+
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~  214 (239)
T 3lxx_A          180 IFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVRE  214 (239)
T ss_dssp             HHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HcCCEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence            88888888877754     6899999988887754

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.88  E-value=8.2e-23  Score=163.14  Aligned_cols=152  Identities=21%  Similarity=0.275  Sum_probs=108.4

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHcCCCC-CCCccccceeEEEEEEEecCCcEEEEEEEeCCChh-hhhh--------cccc
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVRGQFD-PTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE-RYAA--------LAPL  102 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~-~~~~--------~~~~  102 (200)
                      .++|+|+|.+|+|||||+|+|.+..+. ....+..+.+.....+.+. +  ..+.+|||||.. ++..        ....
T Consensus       243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~-g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~  319 (482)
T 1xzp_A          243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIR-G--ILFRIVDTAGVRSETNDLVERLGIERTLQ  319 (482)
T ss_dssp             CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEET-T--EEEEEEESSCCCSSCCTTCCCCCHHHHHH
T ss_pred             CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecC-C--eEEEEEECCCccccchhhHHHHHHHHHHH
Confidence            479999999999999999999997542 2222333333333444443 2  579999999986 4432        1234


Q ss_pred             cccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCC
Q 028986          103 YYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTAD  182 (200)
Q Consensus       103 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~  182 (200)
                      +++.+|++|+|+|++++.+++... ++..+     .+.|+++|+||+|+...  ...+++.+++. .+++++++||+++.
T Consensus       320 ~~~~aD~vl~VvD~s~~~s~~~~~-il~~l-----~~~piivV~NK~DL~~~--~~~~~~~~~~~-~~~~~i~iSAktg~  390 (482)
T 1xzp_A          320 EIEKADIVLFVLDASSPLDEEDRK-ILERI-----KNKRYLVVINKVDVVEK--INEEEIKNKLG-TDRHMVKISALKGE  390 (482)
T ss_dssp             HHHHCSEEEEEEETTSCCCHHHHH-HHHHH-----TTSSEEEEEEECSSCCC--CCHHHHHHHHT-CSTTEEEEEGGGTC
T ss_pred             HhhcccEEEEEecCCCCCCHHHHH-HHHHh-----cCCCEEEEEECcccccc--cCHHHHHHHhc-CCCcEEEEECCCCC
Confidence            678899999999999887665533 22332     36789999999999653  33444444432 44689999999999


Q ss_pred             CHHHHHHHHHHhhc
Q 028986          183 NINQLFEVLITCTS  196 (200)
Q Consensus       183 ~i~~~~~~i~~~~~  196 (200)
                      |+++++++|.+.+.
T Consensus       391 Gi~eL~~~l~~~~~  404 (482)
T 1xzp_A          391 GLEKLEESIYRETQ  404 (482)
T ss_dssp             CHHHHHHHHHHHTH
T ss_pred             CHHHHHHHHHHHHh
Confidence            99999999998754

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.88  E-value=4.9e-22  Score=159.23  Aligned_cols=157  Identities=16%  Similarity=0.128  Sum_probs=109.2

Q ss_pred             CCceeeEEEEcCCCCcHHHHHHHHHcCC----C---CCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccc
Q 028986           30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQ----F---DPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPL  102 (200)
Q Consensus        30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~  102 (200)
                      ....++|+++|+.++|||||+++|.+..    .   .....+..+.+.....+.+.+   ..+.+|||||++++...+..
T Consensus        16 ~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~---~~i~iiDtPGh~~~~~~~~~   92 (482)
T 1wb1_A           16 DFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN---YRITLVDAPGHADLIRAVVS   92 (482)
T ss_dssp             CCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT---EEEEECCCSSHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC---EEEEEEECCChHHHHHHHHH
Confidence            3568999999999999999999999865    1   111111122222222233322   68999999999999888888


Q ss_pred             cccCccEEEEEEeCCC---HHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCc--CCHHHHHHHHHHc----CCeE
Q 028986          103 YYRGAAVAVVVYDITS---PDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKRE--VPAQDGIEYAEKN----GMFF  173 (200)
Q Consensus       103 ~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~--~~~~~~~~~~~~~----~~~~  173 (200)
                      .+..+|++|+|+|+++   +.+.+.+    ..+..   .++|+++|+||+|+.....  ...+++.+++...    ++++
T Consensus        93 ~~~~aD~~ilVvda~~g~~~qt~e~l----~~~~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~i  165 (482)
T 1wb1_A           93 AADIIDLALIVVDAKEGPKTQTGEHM----LILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSI  165 (482)
T ss_dssp             HTTSCCEEEEEEETTTCSCHHHHHHH----HHHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCE
T ss_pred             HHhhCCEEEEEEecCCCccHHHHHHH----HHHHH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceE
Confidence            9999999999999987   4444333    22333   2677899999999865321  1123444555544    5789


Q ss_pred             EEecCCCCCCHHHHHHHHHHhhc
Q 028986          174 IETSAKTADNINQLFEVLITCTS  196 (200)
Q Consensus       174 ~~~S~~~~~~i~~~~~~i~~~~~  196 (200)
                      +++||++|.|+++++++|.+.+.
T Consensus       166 i~vSA~~g~gI~~L~~~L~~~i~  188 (482)
T 1wb1_A          166 IPISAKTGFGVDELKNLIITTLN  188 (482)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHHHhhc
Confidence            99999999999999999998763

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.88  E-value=5.4e-22  Score=150.30  Aligned_cols=157  Identities=15%  Similarity=0.119  Sum_probs=106.2

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCc-cccceeEEEEEEEecCCcEEEEEEEeCCChh---------hhhhccc
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSK-VTVGASFLSQTIALQDSTTVKFEIWDTAGQE---------RYAALAP  101 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~---------~~~~~~~  101 (200)
                      +..+|+|+|++|+|||||+|+|++..+..... +..........+..  . ..++.+|||||..         .+.....
T Consensus         7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~--~-~~~i~~iDTpG~~~~~~~~l~~~~~~~~~   83 (301)
T 1ega_A            7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTE--G-AYQAIYVDTPGLHMEEKRAINRLMNKAAS   83 (301)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEE--T-TEEEEEESSSSCCHHHHHHHHHHHTCCTT
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEE--C-CeeEEEEECcCCCccchhhHHHHHHHHHH
Confidence            44579999999999999999999976532211 11111111111111  1 2689999999986         2344556


Q ss_pred             ccccCccEEEEEEeCCCHHhHHHHHHHH-HHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCC-eEEEecCC
Q 028986          102 LYYRGAAVAVVVYDITSPDSFNKAQYWV-KELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGM-FFIETSAK  179 (200)
Q Consensus       102 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~-~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~  179 (200)
                      .+++.+|++++|+|+++   +.....|+ ..+.   ..+.|+++++||+|+........+.+.++...++. .++++|++
T Consensus        84 ~~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~---~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~  157 (301)
T 1ega_A           84 SSIGDVELVIFVVEGTR---WTPDDEMVLNKLR---EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAE  157 (301)
T ss_dssp             SCCCCEEEEEEEEETTC---CCHHHHHHHHHHH---SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTT
T ss_pred             HHHhcCCEEEEEEeCCC---CCHHHHHHHHHHH---hcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECC
Confidence            78899999999999976   22222233 2232   34789999999999865322223444555555665 69999999


Q ss_pred             CCCCHHHHHHHHHHhhcc
Q 028986          180 TADNINQLFEVLITCTSS  197 (200)
Q Consensus       180 ~~~~i~~~~~~i~~~~~~  197 (200)
                      ++.|++++++.|.+.+.+
T Consensus       158 ~g~~v~~l~~~i~~~l~~  175 (301)
T 1ega_A          158 TGLNVDTIAAIVRKHLPE  175 (301)
T ss_dssp             TTTTHHHHHHHHHTTCCB
T ss_pred             CCCCHHHHHHHHHHhCCc
Confidence            999999999999987653

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.88  E-value=1.6e-21  Score=158.90  Aligned_cols=161  Identities=19%  Similarity=0.196  Sum_probs=114.4

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCC--CCCC-----C----------ccccceeEEEEEEEecCCcEEEEEEEeCCCh
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQ--FDPT-----S----------KVTVGASFLSQTIALQDSTTVKFEIWDTAGQ   93 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~--~~~~-----~----------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~   93 (200)
                      ++..+|+|+|+.++|||||+++|+...  ....     .          ..+.........+...++..+.+.+|||||+
T Consensus         4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh   83 (600)
T 2ywe_A            4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH   83 (600)
T ss_dssp             GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence            456799999999999999999998621  1100     0          0011111111112222455689999999999


Q ss_pred             hhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCC--
Q 028986           94 ERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGM--  171 (200)
Q Consensus        94 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~--  171 (200)
                      .++...+...+..+|++|+|+|++++.+.+....|.....    .++|+++|+||+|+....  ..+...++...+++  
T Consensus        84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~ipiIvviNKiDl~~a~--~~~v~~el~~~lg~~~  157 (600)
T 2ywe_A           84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINKIDLPSAD--VDRVKKQIEEVLGLDP  157 (600)
T ss_dssp             GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHTSCCCG
T ss_pred             HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----CCCCEEEEEeccCccccC--HHHHHHHHHHhhCCCc
Confidence            9998888889999999999999999877777666655442    378999999999986543  23344555555666  


Q ss_pred             -eEEEecCCCCCCHHHHHHHHHHhhcc
Q 028986          172 -FFIETSAKTADNINQLFEVLITCTSS  197 (200)
Q Consensus       172 -~~~~~S~~~~~~i~~~~~~i~~~~~~  197 (200)
                       .++++||++|.|+++++++|++.+..
T Consensus       158 ~~vi~vSAktg~GI~~Lle~I~~~lp~  184 (600)
T 2ywe_A          158 EEAILASAKEGIGIEEILEAIVNRIPP  184 (600)
T ss_dssp             GGCEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             ccEEEEEeecCCCchHHHHHHHHhccc
Confidence             48999999999999999999988754

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.88  E-value=9.9e-22  Score=154.92  Aligned_cols=162  Identities=18%  Similarity=0.178  Sum_probs=111.9

Q ss_pred             CCCceeeEEEEcCCCCcHHHHHHHHHcCCCC---CCCcc--ccceeEEEEEEEec------------C--C----cEEEE
Q 028986           29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFD---PTSKV--TVGASFLSQTIALQ------------D--S----TTVKF   85 (200)
Q Consensus        29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~---~~~~~--~~~~~~~~~~~~~~------------~--~----~~~~~   85 (200)
                      .++..++|+++|+.++|||||+++|++....   ....+  |....+....+...            .  +    ....+
T Consensus         6 ~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i   85 (410)
T 1kk1_A            6 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRV   85 (410)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEE
T ss_pred             cCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEE
Confidence            3467789999999999999999999964322   12122  33333333332210            0  1    12689


Q ss_pred             EEEeCCChhhhhhcccccccCccEEEEEEeCCCH----HhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCc--CCH
Q 028986           86 EIWDTAGQERYAALAPLYYRGAAVAVVVYDITSP----DSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKRE--VPA  159 (200)
Q Consensus        86 ~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~--~~~  159 (200)
                      .+||+||++.+.......+..+|++|+|+|+++.    .+.+.+.    .+....  ..|+++++||+|+.....  ...
T Consensus        86 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~----~~~~~~--~~~iivviNK~Dl~~~~~~~~~~  159 (410)
T 1kk1_A           86 SFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLM----ALQIIG--QKNIIIAQNKIELVDKEKALENY  159 (410)
T ss_dssp             EEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHH----HHHHHT--CCCEEEEEECGGGSCHHHHHHHH
T ss_pred             EEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHH----HHHHcC--CCcEEEEEECccCCCHHHHHHHH
Confidence            9999999999888878888899999999999953    3444333    223221  247999999999865432  122


Q ss_pred             HHHHHHHHH---cCCeEEEecCCCCCCHHHHHHHHHHhhc
Q 028986          160 QDGIEYAEK---NGMFFIETSAKTADNINQLFEVLITCTS  196 (200)
Q Consensus       160 ~~~~~~~~~---~~~~~~~~S~~~~~~i~~~~~~i~~~~~  196 (200)
                      +++.+++..   .+++++++||+++.|+++++++|.+.+.
T Consensus       160 ~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~  199 (410)
T 1kk1_A          160 RQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP  199 (410)
T ss_dssp             HHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             HHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence            344445443   3678999999999999999999998664

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.88  E-value=5.5e-22  Score=161.83  Aligned_cols=160  Identities=19%  Similarity=0.186  Sum_probs=111.4

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHcCC--CCC-----CCc------cccceeEE--EEEEEec--CCcEEEEEEEeCCChh
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVRGQ--FDP-----TSK------VTVGASFL--SQTIALQ--DSTTVKFEIWDTAGQE   94 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~~~--~~~-----~~~------~~~~~~~~--~~~~~~~--~~~~~~~~l~D~~g~~   94 (200)
                      +..||+|+|+.++|||||+++|+...  ...     ...      ...+.+..  ...+.+.  ++..+.+.+|||||+.
T Consensus         3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~   82 (599)
T 3cb4_D            3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV   82 (599)
T ss_dssp             TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence            45689999999999999999998632  110     000      01111211  1122222  4556899999999999


Q ss_pred             hhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCe--
Q 028986           95 RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMF--  172 (200)
Q Consensus        95 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~--  172 (200)
                      ++...+..++..+|++|+|+|++++.+.+....|.....    .++|+++|+||+|+....  ..+...++...+++.  
T Consensus        83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~----~~ipiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~~  156 (599)
T 3cb4_D           83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME----MDLEVVPVLNKIDLPAAD--PERVAEEIEDIVGIDAT  156 (599)
T ss_dssp             GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHHTCCCCT
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEeeeccCccccc--HHHHHHHHHHHhCCCcc
Confidence            999889999999999999999998766666666655543    368999999999997643  233445566666663  


Q ss_pred             -EEEecCCCCCCHHHHHHHHHHhhcc
Q 028986          173 -FIETSAKTADNINQLFEVLITCTSS  197 (200)
Q Consensus       173 -~~~~S~~~~~~i~~~~~~i~~~~~~  197 (200)
                       ++++||++|.|+++++++|.+.+..
T Consensus       157 ~vi~vSAktg~GI~~Ll~~I~~~lp~  182 (599)
T 3cb4_D          157 DAVRCSAKTGVGVQDVLERLVRDIPP  182 (599)
T ss_dssp             TCEEECTTTCTTHHHHHHHHHHHSCC
T ss_pred             eEEEeecccCCCchhHHHHHhhcCCC
Confidence             8999999999999999999988754

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.87  E-value=1.9e-21  Score=150.52  Aligned_cols=161  Identities=15%  Similarity=0.097  Sum_probs=107.7

Q ss_pred             eee-EEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCCh---------hhhhhcccc
Q 028986           33 RVK-LVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ---------ERYAALAPL  102 (200)
Q Consensus        33 ~~~-i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~---------~~~~~~~~~  102 (200)
                      .++ |+|+|++|+|||||+|+|.+........+..+.+.....+.+.+   ..+.+|||+|.         +.+...+. 
T Consensus       178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g---~~v~l~DT~G~i~~lp~~lve~f~~tl~-  253 (364)
T 2qtf_A          178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN---RKIMLVDTVGFIRGIPPQIVDAFFVTLS-  253 (364)
T ss_dssp             -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT---EEEEEEECCCBCSSCCGGGHHHHHHHHH-
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC---EEEEEEeCCCchhcCCHHHHHHHHHHHH-
Confidence            344 99999999999999999999765322222222233344455533   46899999995         22333333 


Q ss_pred             cccCccEEEEEEeCCCHH--hHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcC-CHHHHHHHHHHc---CCeEEEe
Q 028986          103 YYRGAAVAVVVYDITSPD--SFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREV-PAQDGIEYAEKN---GMFFIET  176 (200)
Q Consensus       103 ~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~-~~~~~~~~~~~~---~~~~~~~  176 (200)
                      .+..+|++++|+|++++.  ..+.+..|...+......+.|+++|+||+|+...... ..+.+..++..+   +.+++++
T Consensus       254 ~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~  333 (364)
T 2qtf_A          254 EAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPI  333 (364)
T ss_dssp             GGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEEC
T ss_pred             HHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence            467899999999999876  5566666666666655567899999999998653310 011222333444   3368999


Q ss_pred             cCCCCCCHHHHHHHHHHhhcc
Q 028986          177 SAKTADNINQLFEVLITCTSS  197 (200)
Q Consensus       177 S~~~~~~i~~~~~~i~~~~~~  197 (200)
                      |++++.|+++++++|.+.+..
T Consensus       334 SA~~g~gi~~L~~~I~~~l~~  354 (364)
T 2qtf_A          334 SALKRTNLELLRDKIYQLATQ  354 (364)
T ss_dssp             BTTTTBSHHHHHHHHHHHHHH
T ss_pred             ECCCCcCHHHHHHHHHHHhcc
Confidence            999999999999999887654

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.87  E-value=5.5e-22  Score=157.64  Aligned_cols=151  Identities=20%  Similarity=0.223  Sum_probs=100.3

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcCCCCC-CCccccceeEEEEEEEecCCcEEEEEEEeCCChhh---------hhhccccc
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRGQFDP-TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQER---------YAALAPLY  103 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~---------~~~~~~~~  103 (200)
                      .+|+|+|.+|||||||+|+|++..... ...+..+.+.....+...+   ..+.+|||||.+.         +...+..+
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~---~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~   78 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYG---KTFKLVDTCGVFDNPQDIISQKMKEVTLNM   78 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETT---EEEEEEECTTTTSSGGGCCCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECC---eEEEEEECCCccccccchHHHHHHHHHHHH
Confidence            379999999999999999999876431 2223333333344444433   4689999999653         34556678


Q ss_pred             ccCccEEEEEEeCCCHHhHH--HHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHH-HHHHHHcCC-eEEEecCC
Q 028986          104 YRGAAVAVVVYDITSPDSFN--KAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDG-IEYAEKNGM-FFIETSAK  179 (200)
Q Consensus       104 ~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~-~~~~~~~~~-~~~~~S~~  179 (200)
                      ++.+|++++|+|+.++.+..  .+..|+   +.   .++|+++|+||+|+...  . ..+. .+++ .+++ .++++||+
T Consensus        79 ~~~ad~il~V~D~~~~~~~~d~~i~~~l---~~---~~~p~ilv~NK~D~~~~--~-~~~~~~~~~-~lg~~~~~~iSA~  148 (439)
T 1mky_A           79 IREADLVLFVVDGKRGITKEDESLADFL---RK---STVDTILVANKAENLRE--F-EREVKPELY-SLGFGEPIPVSAE  148 (439)
T ss_dssp             HTTCSEEEEEEETTTCCCHHHHHHHHHH---HH---HTCCEEEEEESCCSHHH--H-HHHTHHHHG-GGSSCSCEECBTT
T ss_pred             HHhCCEEEEEEECCCCCCHHHHHHHHHH---HH---cCCCEEEEEeCCCCccc--c-HHHHHHHHH-hcCCCCEEEEecc
Confidence            89999999999998764432  223332   22   26789999999997431  0 1222 3333 4566 68999999


Q ss_pred             CCCCHHHHHHHHHHhhcc
Q 028986          180 TADNINQLFEVLITCTSS  197 (200)
Q Consensus       180 ~~~~i~~~~~~i~~~~~~  197 (200)
                      +|.|+.+++++|.+.+.+
T Consensus       149 ~g~gv~~L~~~i~~~l~~  166 (439)
T 1mky_A          149 HNINLDTMLETIIKKLEE  166 (439)
T ss_dssp             TTBSHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHhccc
Confidence            999999999999988753

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.87  E-value=9.6e-23  Score=162.07  Aligned_cols=154  Identities=18%  Similarity=0.185  Sum_probs=99.9

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHcCCCCC-CCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhc--------ccc
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDP-TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAAL--------APL  102 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--------~~~  102 (200)
                      ..++|+|+|++|+|||||+|+|++..+.. ...+..+.+.....+.+. +  ..+.+|||||..+....        ...
T Consensus       223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~-g--~~v~liDT~G~~~~~~~ve~~gi~~~~~  299 (462)
T 3geh_A          223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVG-G--IPVQVLDTAGIRETSDQVEKIGVERSRQ  299 (462)
T ss_dssp             HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEET-T--EEEEECC--------------------C
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEEC-C--EEEEEEECCccccchhHHHHHHHHHHhh
Confidence            56789999999999999999999864322 122222222222233332 2  57899999997654433        233


Q ss_pred             cccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCC
Q 028986          103 YYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTAD  182 (200)
Q Consensus       103 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~  182 (200)
                      ++..+|++++|+|++++.+... ..|+..+.     ..|+++|+||+|+.......  ...++.  ...+++++|++++.
T Consensus       300 ~~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~-----~~piivV~NK~Dl~~~~~~~--~~~~~~--~~~~~i~iSAktg~  369 (462)
T 3geh_A          300 AANTADLVLLTIDAATGWTTGD-QEIYEQVK-----HRPLILVMNKIDLVEKQLIT--SLEYPE--NITQIVHTAAAQKQ  369 (462)
T ss_dssp             CCCSCSEEEEEEETTTCSCHHH-HHHHHHHT-----TSCEEEEEECTTSSCGGGST--TCCCCT--TCCCEEEEBTTTTB
T ss_pred             hhhcCCEEEEEeccCCCCCHHH-HHHHHhcc-----CCcEEEEEECCCCCcchhhH--HHHHhc--cCCcEEEEECCCCC
Confidence            6788999999999998755544 44544443     26899999999997654432  111111  35679999999999


Q ss_pred             CHHHHHHHHHHhhccc
Q 028986          183 NINQLFEVLITCTSSY  198 (200)
Q Consensus       183 ~i~~~~~~i~~~~~~~  198 (200)
                      |+++++++|.+.+...
T Consensus       370 Gi~eL~~~i~~~~~~~  385 (462)
T 3geh_A          370 GIDSLETAILEIVQTG  385 (462)
T ss_dssp             SHHHHHHHHHHHHTTS
T ss_pred             CHHHHHHHHHHHHhcc
Confidence            9999999999987643

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.87  E-value=6e-22  Score=147.25  Aligned_cols=164  Identities=17%  Similarity=0.137  Sum_probs=102.4

Q ss_pred             CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCC-CCccc-cceeEEEEEEEecCCcEEEEEEEeCCChhhhhh--------
Q 028986           29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDP-TSKVT-VGASFLSQTIALQDSTTVKFEIWDTAGQERYAA--------   98 (200)
Q Consensus        29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--------   98 (200)
                      +....++|+|+|++|||||||+++|++..... ...++ .+.......+... +  ..+.+|||||+.....        
T Consensus        18 ~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~--~~i~iiDTpG~~~~~~~~~~~~~~   94 (260)
T 2xtp_A           18 ASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWG-N--REIVIIDTPDMFSWKDHCEALYKE   94 (260)
T ss_dssp             ---CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEET-T--EEEEEEECCGGGGSSCCCHHHHHH
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeC-C--CEEEEEECcCCCCCCCCHHHHHHH
Confidence            34567899999999999999999999876332 22222 2222222233332 2  5799999999754322        


Q ss_pred             ---cccccccCccEEEEEEeCCCHHh-HHHHHHHHHHHHHcCCCCCeEEEEEe-CCCCCCCCcCCH-------HHHHHHH
Q 028986           99 ---LAPLYYRGAAVAVVVYDITSPDS-FNKAQYWVKELQKHGSPDIVMALVGN-KADLHEKREVPA-------QDGIEYA  166 (200)
Q Consensus        99 ---~~~~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~p~iiv~n-K~D~~~~~~~~~-------~~~~~~~  166 (200)
                         ....+++.+|++++|+|++.... ...+..++..+... ....|+++|+| |+|+... ....       +++..++
T Consensus        95 i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~-~~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~  172 (260)
T 2xtp_A           95 VQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGE-DAMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLV  172 (260)
T ss_dssp             HHHHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCG-GGGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHH
T ss_pred             HHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCc-hhhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHH
Confidence               22236788999999999986221 12222333333211 11345666666 9998743 2111       2234455


Q ss_pred             HHcCCe---E--EEecCCCCCCHHHHHHHHHHhhcc
Q 028986          167 EKNGMF---F--IETSAKTADNINQLFEVLITCTSS  197 (200)
Q Consensus       167 ~~~~~~---~--~~~S~~~~~~i~~~~~~i~~~~~~  197 (200)
                      ..++..   +  +++||+++.|++++|++|.+.+.+
T Consensus       173 ~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~  208 (260)
T 2xtp_A          173 AACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLME  208 (260)
T ss_dssp             HHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHh
Confidence            555543   2  789999999999999999998765

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.87  E-value=3.5e-21  Score=152.75  Aligned_cols=155  Identities=17%  Similarity=0.161  Sum_probs=102.7

Q ss_pred             CCCceeeEEEEcCCCCcHHHHHHHHHcCCCC-------------------------------CCCccccceeEEEEEEEe
Q 028986           29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFD-------------------------------PTSKVTVGASFLSQTIAL   77 (200)
Q Consensus        29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~   77 (200)
                      +.+..++|+++|++++|||||+++|+.....                               .......+.+.....+..
T Consensus        13 ~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~   92 (439)
T 3j2k_7           13 PKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET   92 (439)
T ss_pred             CCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec
Confidence            4467789999999999999999999653210                               001112222222222322


Q ss_pred             cCCcEEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHHh---HH---HHHHHHHHHHHcCCCCCe-EEEEEeCCC
Q 028986           78 QDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDS---FN---KAQYWVKELQKHGSPDIV-MALVGNKAD  150 (200)
Q Consensus        78 ~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~p-~iiv~nK~D  150 (200)
                      .   ...+.+|||||++++...+...+..+|++|+|+|+++...   ++   .....+..+..   .++| +++++||+|
T Consensus        93 ~---~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~---~~v~~iIvviNK~D  166 (439)
T 3j2k_7           93 E---KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT---AGVKHLIVLINKMD  166 (439)
T ss_pred             C---CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH---cCCCeEEEEeecCC
Confidence            2   2589999999999999999999999999999999998632   11   22222222322   3566 899999999


Q ss_pred             CCCCC--c----CCHHHHHHHHHHcC------CeEEEecCCCCCCHHHHHH
Q 028986          151 LHEKR--E----VPAQDGIEYAEKNG------MFFIETSAKTADNINQLFE  189 (200)
Q Consensus       151 ~~~~~--~----~~~~~~~~~~~~~~------~~~~~~S~~~~~~i~~~~~  189 (200)
                      +....  +    ...++...++..++      ++++++||++|.|+.++.+
T Consensus       167 l~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          167 DPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             CcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence            85321  1    11233334444443      5799999999999998554

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.87  E-value=2.1e-22  Score=150.79  Aligned_cols=161  Identities=16%  Similarity=0.174  Sum_probs=91.1

Q ss_pred             CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCC--------ccccceeEEEEEEEecCCcEEEEEEEeCCChh-------
Q 028986           30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTS--------KVTVGASFLSQTIALQDSTTVKFEIWDTAGQE-------   94 (200)
Q Consensus        30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~-------   94 (200)
                      +...++|+|+|.+|+|||||+|+|++.......        .++.+.+.....+.. ++..+.+.+|||||..       
T Consensus         5 ~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~liDTpG~~d~~~~~~   83 (274)
T 3t5d_A            5 SGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKE-GGVQLLLTIVDTPGFGDAVDNSN   83 (274)
T ss_dssp             --CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC---CCEEEEEEECCCCSCCSCCTT
T ss_pred             CccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEec-CCeEEEEEEEECCCccccccchh
Confidence            356799999999999999999999886543332        333444443333322 3444789999999962       


Q ss_pred             hhhhcc-------cccc-------------cCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCC
Q 028986           95 RYAALA-------PLYY-------------RGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK  154 (200)
Q Consensus        95 ~~~~~~-------~~~~-------------~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~  154 (200)
                      .+....       ..++             ..+|+++++++.+.......-..++..+..    ++|+++|+||+|+...
T Consensus        84 ~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~  159 (274)
T 3t5d_A           84 CWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE----KVNIIPLIAKADTLTP  159 (274)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT----TSCEEEEESSGGGSCH
T ss_pred             hHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc----cCCEEEEEeccCCCCH
Confidence            122211       1111             237899999987653212222334444432    7899999999998643


Q ss_pred             CcCC--HHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHhh
Q 028986          155 REVP--AQDGIEYAEKNGMFFIETSAKTADNINQLFEVLITCT  195 (200)
Q Consensus       155 ~~~~--~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~~  195 (200)
                      .+..  .+.+.+.+...+++++++|++++.++.+++++|.+.+
T Consensus       160 ~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~  202 (274)
T 3t5d_A          160 EECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL  202 (274)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence            3221  1234455556789999999999999999999998765

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.87  E-value=1.6e-21  Score=151.75  Aligned_cols=115  Identities=17%  Similarity=0.177  Sum_probs=94.0

Q ss_pred             EEEEEEeCCChhhhhhcccccccCccEEEEEEeCCC----------HHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCC
Q 028986           83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITS----------PDSFNKAQYWVKELQKHG-SPDIVMALVGNKADL  151 (200)
Q Consensus        83 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~  151 (200)
                      +.+++||++|++.++..|..++++++++|+|||+++          ..+++....|+..+.... ..++|+++|+||+|+
T Consensus       217 v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~DL  296 (402)
T 1azs_C          217 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL  296 (402)
T ss_dssp             EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHHH
T ss_pred             ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChhh
Confidence            789999999999999999999999999999999999          889999999999887653 568999999999998


Q ss_pred             CCCCc---C---------------------------CHHHHHHHH-----HH--------cCCeEEEecCCCCCCHHHHH
Q 028986          152 HEKRE---V---------------------------PAQDGIEYA-----EK--------NGMFFIETSAKTADNINQLF  188 (200)
Q Consensus       152 ~~~~~---~---------------------------~~~~~~~~~-----~~--------~~~~~~~~S~~~~~~i~~~~  188 (200)
                      ...+.   .                           ..+++..++     ..        ..+.++++||+++.||+++|
T Consensus       297 ~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~vF  376 (402)
T 1azs_C          297 LAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVF  376 (402)
T ss_dssp             HHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHHH
T ss_pred             hhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHHH
Confidence            43221   1                           134555553     22        24567899999999999999


Q ss_pred             HHHHHhhcc
Q 028986          189 EVLITCTSS  197 (200)
Q Consensus       189 ~~i~~~~~~  197 (200)
                      .++.+.+.+
T Consensus       377 ~~v~~~I~~  385 (402)
T 1azs_C          377 NDCRDIIQR  385 (402)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999887653

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.86  E-value=1.4e-23  Score=168.86  Aligned_cols=159  Identities=16%  Similarity=0.198  Sum_probs=111.6

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEE
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAV  111 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i  111 (200)
                      +.++|+|+|++++|||||+++|.+..+.....++.+.+.....+...++  ..+.+|||||++.+...+..++..+|++|
T Consensus         3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g--~~i~~iDTPGhe~f~~~~~~~~~~aD~vI   80 (537)
T 3izy_P            3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSG--EKITFLDTPGHAAFSAMRARGTQVTDIVI   80 (537)
T ss_dssp             CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCS--SCCBCEECSSSCCTTTSBBSSSBSBSSCE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCC--CEEEEEECCChHHHHHHHHHHHccCCEEE
Confidence            4568999999999999999999976543333333333333333333233  36899999999999999999999999999


Q ss_pred             EEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcC-CHHHHHHH---HHHc--CCeEEEecCCCCCCHH
Q 028986          112 VVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREV-PAQDGIEY---AEKN--GMFFIETSAKTADNIN  185 (200)
Q Consensus       112 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~-~~~~~~~~---~~~~--~~~~~~~S~~~~~~i~  185 (200)
                      +|+|+++........ ++..+.   ..++|+++++||+|+...... ...+...+   +..+  .++++++||++|.|++
T Consensus        81 LVVDa~dg~~~qt~e-~l~~~~---~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~  156 (537)
T 3izy_P           81 LVVAADDGVMKQTVE-SIQHAK---DAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMM  156 (537)
T ss_dssp             EECBSSSCCCHHHHH-HHHHHH---TTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSH
T ss_pred             EEEECCCCccHHHHH-HHHHHH---HcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCch
Confidence            999999864443333 223333   347899999999998653221 11222221   1111  3479999999999999


Q ss_pred             HHHHHHHHhhc
Q 028986          186 QLFEVLITCTS  196 (200)
Q Consensus       186 ~~~~~i~~~~~  196 (200)
                      +++++|...+.
T Consensus       157 eLle~I~~l~~  167 (537)
T 3izy_P          157 ALAEATIALAE  167 (537)
T ss_dssp             HHHHHHHHHHT
T ss_pred             hHHHHHHHhhh
Confidence            99999998764

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.86  E-value=2.3e-21  Score=147.32  Aligned_cols=116  Identities=16%  Similarity=0.190  Sum_probs=95.5

Q ss_pred             EEEEEEeCCChhhhhhcccccccCccEEEEEEeCC----------CHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCC
Q 028986           83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDIT----------SPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADL  151 (200)
Q Consensus        83 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~  151 (200)
                      +.+++||++|++.++..|.+++++++++|+|+|++          +..+++....|+..+.... ..++|+++++||+|+
T Consensus       167 v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~DL  246 (327)
T 3ohm_A          167 VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDL  246 (327)
T ss_dssp             EEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHHH
T ss_pred             eeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECchh
Confidence            78999999999999999999999999999999665          5667877777777775532 467999999999998


Q ss_pred             CCCC----------------cCCHHHHHHHHH----------HcCCeEEEecCCCCCCHHHHHHHHHHhhccc
Q 028986          152 HEKR----------------EVPAQDGIEYAE----------KNGMFFIETSAKTADNINQLFEVLITCTSSY  198 (200)
Q Consensus       152 ~~~~----------------~~~~~~~~~~~~----------~~~~~~~~~S~~~~~~i~~~~~~i~~~~~~~  198 (200)
                      ...+                ....+++.+++.          ..++.++++||+++.||+.+|..+.+.+.+.
T Consensus       247 ~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~  319 (327)
T 3ohm_A          247 LEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL  319 (327)
T ss_dssp             HHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHT
T ss_pred             hhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHHH
Confidence            5432                456777777743          3466789999999999999999999887653

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.86  E-value=6.4e-22  Score=157.13  Aligned_cols=153  Identities=18%  Similarity=0.134  Sum_probs=97.6

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChh--------hhhhccccccc
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE--------RYAALAPLYYR  105 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~--------~~~~~~~~~~~  105 (200)
                      .+|+|+|.+|||||||+|+|++...... ..+.+.+............ ..+.+|||||.+        .+...+..+++
T Consensus         4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v-~~~~g~T~d~~~~~~~~~~-~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~   81 (436)
T 2hjg_A            4 PVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEWLN-YDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD   81 (436)
T ss_dssp             CEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTTCS-SCCEEEC---------CHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCCccceEEEEEEECC-ceEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence            5899999999999999999998765322 2223332222222222222 479999999975        56667778889


Q ss_pred             CccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCC-eEEEecCCCCCCH
Q 028986          106 GAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGM-FFIETSAKTADNI  184 (200)
Q Consensus       106 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~i  184 (200)
                      .+|++|+|+|+.++.+... ..+...+.   ..++|+++|+||+|+......    ..++. .++. .++++||++|.|+
T Consensus        82 ~ad~il~vvD~~~~~~~~d-~~~~~~l~---~~~~pvilv~NK~D~~~~~~~----~~~~~-~lg~~~~~~iSA~~g~gv  152 (436)
T 2hjg_A           82 EADVIIFMVNGREGVTAAD-EEVAKILY---RTKKPVVLAVNKLDNTEMRAN----IYDFY-SLGFGEPYPISGTHGLGL  152 (436)
T ss_dssp             HCSEEEEEEETTTCSCHHH-HHHHHHHT---TCCSCEEEEEECCCC-----C----CCSSG-GGSSCCCEECBTTTTBTH
T ss_pred             hCCEEEEEEeCCCCCCHHH-HHHHHHHH---HcCCCEEEEEECccCccchhh----HHHHH-HcCCCCeEEEeCcCCCCh
Confidence            9999999999998755433 22223333   347899999999998653211    11222 3454 6899999999999


Q ss_pred             HHHHHHHHHhhcc
Q 028986          185 NQLFEVLITCTSS  197 (200)
Q Consensus       185 ~~~~~~i~~~~~~  197 (200)
                      .+++++|.+.+.+
T Consensus       153 ~~L~~~i~~~l~~  165 (436)
T 2hjg_A          153 GDLLDAVAEHFKN  165 (436)
T ss_dssp             HHHHHHHHHTGGG
T ss_pred             HHHHHHHHHhcCc
Confidence            9999999998863

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.86  E-value=8.9e-21  Score=150.69  Aligned_cols=161  Identities=22%  Similarity=0.200  Sum_probs=104.1

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCC-CCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcc---------
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDP-TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALA---------  100 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~---------  100 (200)
                      +..++|+|+|++|||||||+|+|++..... ...+..+.+.....+.+. +  ..+.+|||+|........         
T Consensus       178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~-g--~~~~l~Dt~G~~~~~~~~~~~~e~~~~  254 (439)
T 1mky_A          178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFID-G--RKYVFVDTAGLRRKSRVEPRTVEKYSN  254 (439)
T ss_dssp             CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEET-T--EEEEESSCSCC-----------CCSCC
T ss_pred             ccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEEC-C--EEEEEEECCCCccccccchhhHHHHHH
Confidence            456899999999999999999999975421 111122222222334443 3  368899999974332211         


Q ss_pred             ---cccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHH-HHH----cCCe
Q 028986          101 ---PLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEY-AEK----NGMF  172 (200)
Q Consensus       101 ---~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~-~~~----~~~~  172 (200)
                         ..++..+|++++++|++++.+.... .+...+..   .+.|+++|+||+|+.+......++..+. ...    ..++
T Consensus       255 ~~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (439)
T 1mky_A          255 YRVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSP  330 (439)
T ss_dssp             HHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSC
T ss_pred             HHHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCc
Confidence               2245678999999999876554432 23333332   3789999999999976544333333322 222    3578


Q ss_pred             EEEecCCCCCCHHHHHHHHHHhhccc
Q 028986          173 FIETSAKTADNINQLFEVLITCTSSY  198 (200)
Q Consensus       173 ~~~~S~~~~~~i~~~~~~i~~~~~~~  198 (200)
                      ++++||++|.|++++|+.+.+.+.+.
T Consensus       331 ~~~~SA~~g~gv~~l~~~i~~~~~~~  356 (439)
T 1mky_A          331 LIFTSADKGWNIDRMIDAMNLAYASY  356 (439)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHhh
Confidence            99999999999999999999877653

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.86  E-value=1.3e-21  Score=138.98  Aligned_cols=117  Identities=15%  Similarity=0.240  Sum_probs=87.2

Q ss_pred             CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCC---CccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccC
Q 028986           30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPT---SKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRG  106 (200)
Q Consensus        30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~  106 (200)
                      ....++|+|+|++|||||||+++|.+..+...   ..++.+.+       +   ....+.+||+||++.+...+..++..
T Consensus        45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~-------~---~~~~~~l~Dt~G~~~~~~~~~~~~~~  114 (193)
T 2ged_A           45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAAD-------Y---DGSGVTLVDFPGHVKLRYKLSDYLKT  114 (193)
T ss_dssp             -CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------C-------C---CCTTCSEEEETTCCBSSCCHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeee-------e---cCCeEEEEECCCCchHHHHHHHHHHh
Confidence            35678999999999999999999999765431   11111111       1   22568999999998877777766665


Q ss_pred             ----ccEEEEEEeCC-CHHhHHHHHHHHHHHHHc----CCCCCeEEEEEeCCCCCCCCc
Q 028986          107 ----AAVAVVVYDIT-SPDSFNKAQYWVKELQKH----GSPDIVMALVGNKADLHEKRE  156 (200)
Q Consensus       107 ----~d~~i~v~d~~-~~~s~~~~~~~~~~i~~~----~~~~~p~iiv~nK~D~~~~~~  156 (200)
                          +|++++|+|++ +..++..+..|+..+...    ...+.|+++|+||+|+.....
T Consensus       115 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~  173 (193)
T 2ged_A          115 RAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP  173 (193)
T ss_dssp             HGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred             hcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCC
Confidence                89999999999 888998888888776543    345899999999999976544

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.85  E-value=2.1e-21  Score=155.91  Aligned_cols=152  Identities=14%  Similarity=0.133  Sum_probs=97.7

Q ss_pred             CCceeeEEEEcCCCCcHHHHHHHHHcCCCC-------------------------------CCCccccceeEEEEEEEec
Q 028986           30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFD-------------------------------PTSKVTVGASFLSQTIALQ   78 (200)
Q Consensus        30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~   78 (200)
                      .+..+||+++|++++|||||+++|++....                               .........+.....+.. 
T Consensus        30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-  108 (483)
T 3p26_A           30 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST-  108 (483)
T ss_dssp             SCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEEC-
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEec-
Confidence            356799999999999999999999764110                               000011111111222222 


Q ss_pred             CCcEEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHHhHH------HHHHHHHHHHHcCCCCCeEEEEEeCCCCC
Q 028986           79 DSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFN------KAQYWVKELQKHGSPDIVMALVGNKADLH  152 (200)
Q Consensus        79 ~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~------~~~~~~~~i~~~~~~~~p~iiv~nK~D~~  152 (200)
                       . ...+.+|||||++++...+..++..+|++|+|+|++++.+..      .....+..+...  ...|+++|+||+|+.
T Consensus       109 -~-~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~--~~~~iIvviNK~Dl~  184 (483)
T 3p26_A          109 -H-RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNV  184 (483)
T ss_dssp             -S-SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT--TCCCEEEEEECGGGG
T ss_pred             -C-CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc--CCCcEEEEEECcCcc
Confidence             2 258999999999999999999999999999999999875432      222222223322  124699999999987


Q ss_pred             CCCcCCHHHHHH----HHHHc-----CCeEEEecCCCCCCHHH
Q 028986          153 EKREVPAQDGIE----YAEKN-----GMFFIETSAKTADNINQ  186 (200)
Q Consensus       153 ~~~~~~~~~~~~----~~~~~-----~~~~~~~S~~~~~~i~~  186 (200)
                      ...+...+++.+    ++...     +++++++||++|.|+.+
T Consensus       185 ~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e  227 (483)
T 3p26_A          185 DWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK  227 (483)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred             cchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence            643333333333    33322     46799999999999874

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.85  E-value=5.5e-21  Score=150.01  Aligned_cols=160  Identities=14%  Similarity=0.117  Sum_probs=108.6

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHcCC-------CCCC-------CccccceeEEEEEEEecCCcEEEEEEEeCCChhhhh
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVRGQ-------FDPT-------SKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYA   97 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~~~-------~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~   97 (200)
                      ..++|+++|+.++|||||+++|++..       +...       .....+.+.......+... ...+.+|||||++++.
T Consensus         2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~-~~~~~iiDtpG~~~f~   80 (397)
T 1d2e_A            2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTA-ARHYAHTDCPGHADYV   80 (397)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECS-SCEEEEEECSSHHHHH
T ss_pred             CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccC-CeEEEEEECCChHHHH
Confidence            46899999999999999999998731       1100       0001122221122223222 2579999999999998


Q ss_pred             hcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCe-EEEEEeCCCCCCCCcC---CHHHHHHHHHHcC---
Q 028986           98 ALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIV-MALVGNKADLHEKREV---PAQDGIEYAEKNG---  170 (200)
Q Consensus        98 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~iiv~nK~D~~~~~~~---~~~~~~~~~~~~~---  170 (200)
                      ..+..++..+|++|+|+|+++....+... ++..+..   .++| +++++||+|+....+.   ..+++.+++..++   
T Consensus        81 ~~~~~~~~~aD~~ilVvda~~g~~~qt~e-~l~~~~~---~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~  156 (397)
T 1d2e_A           81 KNMITGTAPLDGCILVVAANDGPMPQTRE-HLLLARQ---IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKG  156 (397)
T ss_dssp             HHHHHTSSCCSEEEEEEETTTCSCHHHHH-HHHHHHH---TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred             HHHHhhHhhCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCc
Confidence            88888899999999999999854333222 3333433   2677 7899999998643211   1234556666655   


Q ss_pred             --CeEEEecCCCCCC----------HHHHHHHHHHhhc
Q 028986          171 --MFFIETSAKTADN----------INQLFEVLITCTS  196 (200)
Q Consensus       171 --~~~~~~S~~~~~~----------i~~~~~~i~~~~~  196 (200)
                        ++++++||+++.|          +.++++.|.+.+.
T Consensus       157 ~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p  194 (397)
T 1d2e_A          157 EETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP  194 (397)
T ss_dssp             TTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred             ccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence              5899999999764          8899999988664

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.84  E-value=2.2e-20  Score=152.47  Aligned_cols=158  Identities=19%  Similarity=0.218  Sum_probs=106.3

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHcCCCCCC----CccccceeEEEEEE------EecC-----CcEEEEEEEeCCChhhh
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPT----SKVTVGASFLSQTI------ALQD-----STTVKFEIWDTAGQERY   96 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~----~~~~~~~~~~~~~~------~~~~-----~~~~~~~l~D~~g~~~~   96 (200)
                      +.++|+|+|++++|||||+++|.+..+...    ..++.+..+.....      ....     .....+.+|||||++.+
T Consensus         4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F   83 (594)
T 1g7s_A            4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF   83 (594)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence            457899999999999999999987543221    11222222211100      0000     11125899999999999


Q ss_pred             hhcccccccCccEEEEEEeCCC---HHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCC-------------H-
Q 028986           97 AALAPLYYRGAAVAVVVYDITS---PDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVP-------------A-  159 (200)
Q Consensus        97 ~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~-------------~-  159 (200)
                      ...+..++..+|++|+|+|+++   +.+++.+..    +..   .++|+++++||+|+.......             . 
T Consensus        84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~---~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~  156 (594)
T 1g7s_A           84 TTLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQ  156 (594)
T ss_dssp             TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHH
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHH---cCCeEEEEecccccccccccccCCchHHHHHHhHHH
Confidence            9999999999999999999998   555554432    222   378999999999986432110             0 


Q ss_pred             --H-------HHHHHHHHc---------------CCeEEEecCCCCCCHHHHHHHHHHhhc
Q 028986          160 --Q-------DGIEYAEKN---------------GMFFIETSAKTADNINQLFEVLITCTS  196 (200)
Q Consensus       160 --~-------~~~~~~~~~---------------~~~~~~~S~~~~~~i~~~~~~i~~~~~  196 (200)
                        +       +......+.               .++++++||++|.|+++++++|...+.
T Consensus       157 v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~  217 (594)
T 1g7s_A          157 VQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ  217 (594)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence              0       111111222               237999999999999999999998765

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.84  E-value=1e-21  Score=151.15  Aligned_cols=117  Identities=15%  Similarity=0.200  Sum_probs=92.4

Q ss_pred             cEEEEEEEeCCChhhhhhcccccccCccEEEEEEeCC----------CHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCC
Q 028986           81 TTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDIT----------SPDSFNKAQYWVKELQKHG-SPDIVMALVGNKA  149 (200)
Q Consensus        81 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~  149 (200)
                      ..+.+++||++|++.++..|..++++++++|+|||++          +..+++....|+..+.... ..++|+++|+||+
T Consensus       181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~  260 (354)
T 2xtz_A          181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF  260 (354)
T ss_dssp             ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred             cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence            4589999999999999999999999999999999998          7788999988888876543 4679999999999


Q ss_pred             CCCCCCc--C-------------------CHHHHHHHHHH----------------cCCeEEEecCCCCCCHHHHHHHHH
Q 028986          150 DLHEKRE--V-------------------PAQDGIEYAEK----------------NGMFFIETSAKTADNINQLFEVLI  192 (200)
Q Consensus       150 D~~~~~~--~-------------------~~~~~~~~~~~----------------~~~~~~~~S~~~~~~i~~~~~~i~  192 (200)
                      |+...+.  .                   ..+++.+++..                ..+.+++|||+++.||+++|+++.
T Consensus       261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~  340 (354)
T 2xtz_A          261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD  340 (354)
T ss_dssp             HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence            9843211  1                   13555666432                123468999999999999999998


Q ss_pred             Hhhcc
Q 028986          193 TCTSS  197 (200)
Q Consensus       193 ~~~~~  197 (200)
                      +.+.+
T Consensus       341 ~~I~~  345 (354)
T 2xtz_A          341 ETLRR  345 (354)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87654

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.84  E-value=2.6e-21  Score=152.27  Aligned_cols=162  Identities=12%  Similarity=0.121  Sum_probs=110.9

Q ss_pred             CCceeeEEEEcCCCCcHHHHHHHHHcC--------CCCCCC-------ccccceeEEEEEEEecCCcEEEEEEEeCCChh
Q 028986           30 KNLRVKLVLLGDSGVGKSCIVLRFVRG--------QFDPTS-------KVTVGASFLSQTIALQDSTTVKFEIWDTAGQE   94 (200)
Q Consensus        30 ~~~~~~i~i~G~~~sGKSsli~~l~~~--------~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~   94 (200)
                      ....++|+++|++++|||||+++|++.        .+....       ....+.+.......+.... ..+.+|||||++
T Consensus         8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~-~~~~iiDtpG~~   86 (405)
T 2c78_A            8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAK-RHYSHVDCPGHA   86 (405)
T ss_dssp             -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSS-CEEEEEECCCSG
T ss_pred             CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCC-eEEEEEECCChH
Confidence            356789999999999999999999873        111100       0011222212222232222 578999999999


Q ss_pred             hhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCe-EEEEEeCCCCCCCCcC---CHHHHHHHHHHcC
Q 028986           95 RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIV-MALVGNKADLHEKREV---PAQDGIEYAEKNG  170 (200)
Q Consensus        95 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~iiv~nK~D~~~~~~~---~~~~~~~~~~~~~  170 (200)
                      ++...+..++..+|++|+|+|+++... .....++..+...   ++| +++++||+|+....+.   ..+++.+++..++
T Consensus        87 ~f~~~~~~~~~~aD~~ilVvda~~g~~-~qt~~~l~~~~~~---~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~  162 (405)
T 2c78_A           87 DYIKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV---GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYE  162 (405)
T ss_dssp             GGHHHHHHHHTTCSSEEEEEETTTCCC-HHHHHHHHHHHHT---TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhc
Confidence            998888888999999999999988643 3334555555543   677 8899999998743211   1234555666654


Q ss_pred             -----CeEEEecCCCCCC------------------HHHHHHHHHHhhc
Q 028986          171 -----MFFIETSAKTADN------------------INQLFEVLITCTS  196 (200)
Q Consensus       171 -----~~~~~~S~~~~~~------------------i~~~~~~i~~~~~  196 (200)
                           ++++++||++|.|                  +.++++.|.+.+.
T Consensus       163 ~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp  211 (405)
T 2c78_A          163 FPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP  211 (405)
T ss_dssp             SCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred             ccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence                 6899999999987                  7888888877654

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.84  E-value=1e-20  Score=152.69  Aligned_cols=116  Identities=12%  Similarity=0.101  Sum_probs=81.0

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCC---------------CC-------ccccceeEEEEEEEecCCcEEEEEEE
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDP---------------TS-------KVTVGASFLSQTIALQDSTTVKFEIW   88 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~---------------~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~   88 (200)
                      .+..+|+|+|++++|||||+++|+......               ..       ............+...   .+.+.+|
T Consensus        11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~---~~~i~li   87 (528)
T 3tr5_A           11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYK---DYLINLL   87 (528)
T ss_dssp             HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEET---TEEEEEE
T ss_pred             hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeC---CEEEEEE
Confidence            456799999999999999999997211000               00       0011111112222222   2689999


Q ss_pred             eCCChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCC
Q 028986           89 DTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE  153 (200)
Q Consensus        89 D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~  153 (200)
                      ||||+.++...+..+++.+|++|+|+|+++..+......| ..+.   ..++|+++|+||+|+..
T Consensus        88 DTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~-~~~~---~~~iPiivviNK~Dl~~  148 (528)
T 3tr5_A           88 DTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLM-EVCR---LRHTPIMTFINKMDRDT  148 (528)
T ss_dssp             CCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHH-HHHH---TTTCCEEEEEECTTSCC
T ss_pred             ECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHH---HcCCCEEEEEeCCCCcc
Confidence            9999999988889999999999999999987655554444 3333   34789999999999864

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.84  E-value=7.1e-22  Score=156.74  Aligned_cols=154  Identities=18%  Similarity=0.220  Sum_probs=101.1

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcC--CCCCCC-----------------------------ccccceeEEEEEEEecC
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRG--QFDPTS-----------------------------KVTVGASFLSQTIALQD   79 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~--~~~~~~-----------------------------~~~~~~~~~~~~~~~~~   79 (200)
                      +..++|+++|+.++|||||+++|+..  .+....                             ....+.+.....+..  
T Consensus         4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~--   81 (435)
T 1jny_A            4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFET--   81 (435)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEEC--
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEec--
Confidence            45789999999999999999999864  222110                             001111111112222  


Q ss_pred             CcEEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHc----CCCC-CeEEEEEeCCCCCCC
Q 028986           80 STTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKH----GSPD-IVMALVGNKADLHEK  154 (200)
Q Consensus        80 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~----~~~~-~p~iiv~nK~D~~~~  154 (200)
                       ....+.+|||||++++...+..++..+|++|+|+|+++ .+++....|.....++    ...+ .|+++++||+|+...
T Consensus        82 -~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~  159 (435)
T 1jny_A           82 -KKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEP  159 (435)
T ss_dssp             -SSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSS
T ss_pred             -CCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCc
Confidence             22579999999999999888889999999999999998 5566433222221111    1123 358999999998652


Q ss_pred             C------cCCHHHHHHHHHHcC-----CeEEEecCCCCCCHHHHH
Q 028986          155 R------EVPAQDGIEYAEKNG-----MFFIETSAKTADNINQLF  188 (200)
Q Consensus       155 ~------~~~~~~~~~~~~~~~-----~~~~~~S~~~~~~i~~~~  188 (200)
                      .      +...+++.+++..++     ++++++||++|.|+.+++
T Consensus       160 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~  204 (435)
T 1jny_A          160 PYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKS  204 (435)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCC
T ss_pred             cccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccccc
Confidence            1      111345556666655     679999999999997543

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.84  E-value=2.2e-21  Score=154.90  Aligned_cols=155  Identities=17%  Similarity=0.121  Sum_probs=98.8

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCC--------hhhhhhcccc
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAG--------QERYAALAPL  102 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g--------~~~~~~~~~~  102 (200)
                      ....+|+|+|.+|||||||+|+|++..+... ..+.+.+............ ..+.+|||||        ++.+...+..
T Consensus        21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v-~~~~g~t~~~~~~~~~~~~-~~~~liDT~G~~~~~~~~~~~~~~~~~~   98 (456)
T 4dcu_A           21 MGKPVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEWLN-YDFNLIDTGGIDIGDEPFLAQIRQQAEI   98 (456)
T ss_dssp             --CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCS-SCCEEECCCC------CCHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCCCCccc-CCCCCcceeEEEEEEEECC-ceEEEEECCCCCCcchHHHHHHHHHHHh
Confidence            4466899999999999999999998755322 2223333322223332222 5799999999        7777788888


Q ss_pred             cccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCC-eEEEecCCCC
Q 028986          103 YYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGM-FFIETSAKTA  181 (200)
Q Consensus       103 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~  181 (200)
                      +++.+|++|+|+|..+..+..  ..++..+.+  ..++|+++|+||+|+.....    ...++. .++. .++++||++|
T Consensus        99 ~~~~ad~il~VvD~~~~~~~~--d~~l~~~l~--~~~~pvilV~NK~D~~~~~~----~~~e~~-~lg~~~~~~iSA~~g  169 (456)
T 4dcu_A           99 AMDEADVIIFMVNGREGVTAA--DEEVAKILY--RTKKPVVLAVNKLDNTEMRA----NIYDFY-SLGFGEPYPISGTHG  169 (456)
T ss_dssp             HHHHCSEEEEEEESSSCSCHH--HHHHHHHHT--TCCSCEEEEEECC-------------CCSG-GGSSSSEEECCTTTC
T ss_pred             hHhhCCEEEEEEeCCCCCChH--HHHHHHHHH--HcCCCEEEEEECccchhhhh----hHHHHH-HcCCCceEEeecccc
Confidence            999999999999988753222  223322222  35789999999999854321    111121 1232 4689999999


Q ss_pred             CCHHHHHHHHHHhhc
Q 028986          182 DNINQLFEVLITCTS  196 (200)
Q Consensus       182 ~~i~~~~~~i~~~~~  196 (200)
                      .|+.++++++.+.+.
T Consensus       170 ~gv~~L~~~i~~~l~  184 (456)
T 4dcu_A          170 LGLGDLLDAVAEHFK  184 (456)
T ss_dssp             TTHHHHHHHHHTTGG
T ss_pred             cchHHHHHHHHhhcc
Confidence            999999999988765

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.84  E-value=4.6e-22  Score=154.10  Aligned_cols=161  Identities=16%  Similarity=0.247  Sum_probs=86.0

Q ss_pred             CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCC-Cc--------cccceeEEEEEEEec-CCcEEEEEEEeCCCh------
Q 028986           30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPT-SK--------VTVGASFLSQTIALQ-DSTTVKFEIWDTAGQ------   93 (200)
Q Consensus        30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~-~~--------~~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~------   93 (200)
                      ....++|+|+|++|+|||||+++|++...... +.        ++.+...  ....+. ++..+.+.+|||||.      
T Consensus        34 ~~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~--~~~~~~~~~~~~~l~i~DTpG~gd~~~~  111 (361)
T 2qag_A           34 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEA--STVEIEERGVKLRLTVVDTPGYGDAINC  111 (361)
T ss_dssp             HCCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEE--EEEC----CEEEEEEEEC----------
T ss_pred             CCCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEE--EEEEeecCCcccceEEEEeccccccCcc
Confidence            35678999999999999999999877543221 11        2222222  222222 334468999999998      


Q ss_pred             -hhhhhccc-------ccccC-------------ccEEEEEEeCCCHHhHHHHH-HHHHHHHHcCCCCCeEEEEEeCCCC
Q 028986           94 -ERYAALAP-------LYYRG-------------AAVAVVVYDITSPDSFNKAQ-YWVKELQKHGSPDIVMALVGNKADL  151 (200)
Q Consensus        94 -~~~~~~~~-------~~~~~-------------~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~  151 (200)
                       +.+..++.       .++..             +|+++|+++.. ..++..+. .|+..+    ..++|+|+|+||+|+
T Consensus       112 ~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l----~~~~piIlV~NK~Dl  186 (361)
T 2qag_A          112 RDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAI----HNKVNIVPVIAKADT  186 (361)
T ss_dssp             ----CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHT----CS-SCEEEEEECCSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHh----ccCCCEEEEEECCCC
Confidence             44544443       33332             23455555542 23343332 333333    357899999999998


Q ss_pred             CCCCcCCH--HHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHhhccc
Q 028986          152 HEKREVPA--QDGIEYAEKNGMFFIETSAKTADNINQLFEVLITCTSSY  198 (200)
Q Consensus       152 ~~~~~~~~--~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~~~~~  198 (200)
                      ....++..  +++.+++..++++++++|++++.+ ++.|.++.+.+.+.
T Consensus       187 ~~~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~  234 (361)
T 2qag_A          187 LTLKERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKAS  234 (361)
T ss_dssp             SCHHHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhc
Confidence            76544333  455666667789999999999998 88888887776554

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.84  E-value=4.1e-20  Score=146.62  Aligned_cols=153  Identities=20%  Similarity=0.207  Sum_probs=102.2

Q ss_pred             CCCceeeEEEEcCCCCcHHHHHHHHHcCCC---CCC---------Ccccc---------------------ceeEEEEEE
Q 028986           29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQF---DPT---------SKVTV---------------------GASFLSQTI   75 (200)
Q Consensus        29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~---~~~---------~~~~~---------------------~~~~~~~~~   75 (200)
                      ..+..++|+++|+.++|||||+++|++...   ...         ...+.                     ..+.....+
T Consensus        20 ~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~   99 (434)
T 1zun_B           20 ERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYF   99 (434)
T ss_dssp             TSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEE
T ss_pred             ccCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEe
Confidence            345678999999999999999999987531   100         00110                     001111111


Q ss_pred             EecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCC
Q 028986           76 ALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKR  155 (200)
Q Consensus        76 ~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~  155 (200)
                      .   .....+.+|||||++++...+..++..+|++|+|+|++++.. .....++..+....  ..|+++|+||+|+....
T Consensus       100 ~---~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~-~qt~~~l~~~~~~~--~~~iIvviNK~Dl~~~~  173 (434)
T 1zun_B          100 S---TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ-TQTRRHSYIASLLG--IKHIVVAINKMDLNGFD  173 (434)
T ss_dssp             E---CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC-HHHHHHHHHHHHTT--CCEEEEEEECTTTTTSC
T ss_pred             e---cCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHcC--CCeEEEEEEcCcCCccc
Confidence            1   122679999999999998888888999999999999998642 22333444444331  23699999999997532


Q ss_pred             cC----CHHHHHHHHHHcC-----CeEEEecCCCCCCHHHH
Q 028986          156 EV----PAQDGIEYAEKNG-----MFFIETSAKTADNINQL  187 (200)
Q Consensus       156 ~~----~~~~~~~~~~~~~-----~~~~~~S~~~~~~i~~~  187 (200)
                      +.    ..++..+++..++     ++++++||++|.|+.++
T Consensus       174 ~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~  214 (434)
T 1zun_B          174 ERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK  214 (434)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred             HHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence            11    1234555666666     67999999999999874

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.83  E-value=5.5e-21  Score=148.35  Aligned_cols=145  Identities=6%  Similarity=0.025  Sum_probs=103.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEEE
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVY  114 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~  114 (200)
                      +|+++|++++|||||+++|+.      ...+....+  ..+...+   .++.+|||||++++.......+..+|++|+|+
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~~------~giTi~~~~--~~~~~~~---~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVv   91 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLGK------KGTSSDITM--YNNDKEG---RNMVFVDAHSYPKTLKSLITALNISDIAVLCI   91 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTSE------EEEESSSEE--EEECSSS---SEEEEEECTTTTTCHHHHHHHHHTCSEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHh------CCEEEEeeE--EEEecCC---eEEEEEECCChHHHHHHHHHHHHHCCEEEEEE
Confidence            899999999999999999981      122222222  2222222   46999999999998877777889999999999


Q ss_pred             eCCCHHhHHHHHHHHHHHHHcCCCCCeE-EEEEe-CCCCCCCCcCC--HHHHHHHHHHc---CCeEEE--ecCCC---CC
Q 028986          115 DITSPDSFNKAQYWVKELQKHGSPDIVM-ALVGN-KADLHEKREVP--AQDGIEYAEKN---GMFFIE--TSAKT---AD  182 (200)
Q Consensus       115 d~~~~~s~~~~~~~~~~i~~~~~~~~p~-iiv~n-K~D~~~~~~~~--~~~~~~~~~~~---~~~~~~--~S~~~---~~  182 (200)
                      | .. ..+.....++..+...   ++|. ++++| |+|+ ......  .+++.+++...   .+++++  +||++   +.
T Consensus        92 d-~~-g~~~qt~e~~~~~~~~---~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~  165 (370)
T 2elf_A           92 P-PQ-GLDAHTGECIIALDLL---GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFE  165 (370)
T ss_dssp             C-TT-CCCHHHHHHHHHHHHT---TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTT
T ss_pred             c-CC-CCcHHHHHHHHHHHHc---CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCC
Confidence            9 53 3344555566555544   4566 88899 9998 432211  13444444443   368999  99999   99


Q ss_pred             CHHHHHHHHHHhhc
Q 028986          183 NINQLFEVLITCTS  196 (200)
Q Consensus       183 ~i~~~~~~i~~~~~  196 (200)
                      |++++++.|.+.+.
T Consensus       166 gi~~L~~~l~~~~~  179 (370)
T 2elf_A          166 GVDELKARINEVAE  179 (370)
T ss_dssp             THHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhhcc
Confidence            99999999988764

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.83  E-value=7.6e-21  Score=156.00  Aligned_cols=153  Identities=15%  Similarity=0.165  Sum_probs=100.0

Q ss_pred             CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCc-------------------------------cccceeEEEEEEEec
Q 028986           30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSK-------------------------------VTVGASFLSQTIALQ   78 (200)
Q Consensus        30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~   78 (200)
                      .+..++|+++|++++|||||+++|++........                               +....+.....+...
T Consensus       164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~  243 (611)
T 3izq_1          164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH  243 (611)
T ss_dssp             CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred             cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence            3567899999999999999999999753211110                               111111112222222


Q ss_pred             CCcEEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHHh---H---HHHHHHHHHHHHcCCCCCeEEEEEeCCCCC
Q 028986           79 DSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDS---F---NKAQYWVKELQKHGSPDIVMALVGNKADLH  152 (200)
Q Consensus        79 ~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~  152 (200)
                         ..++.+|||||++.+...+..++..+|++|+|+|++++..   +   ......+..+...  ...|+++|+||+|+.
T Consensus       244 ---~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~l--gi~~iIVVvNKiDl~  318 (611)
T 3izq_1          244 ---RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNV  318 (611)
T ss_dssp             ---SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTT--TCCEEEEEEECTTTT
T ss_pred             ---CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHc--CCCeEEEEEeccccc
Confidence               2579999999999999999999999999999999987521   1   1112222222222  124599999999987


Q ss_pred             CCCcCCHH----HHHHHHHHc-----CCeEEEecCCCCCCHHHH
Q 028986          153 EKREVPAQ----DGIEYAEKN-----GMFFIETSAKTADNINQL  187 (200)
Q Consensus       153 ~~~~~~~~----~~~~~~~~~-----~~~~~~~S~~~~~~i~~~  187 (200)
                      ...+...+    ++..++...     +++++++||++|.|+.++
T Consensus       319 ~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          319 DWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred             chhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence            63322222    233333333     458999999999999865

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.82  E-value=3.2e-20  Score=141.52  Aligned_cols=115  Identities=18%  Similarity=0.287  Sum_probs=92.4

Q ss_pred             EEEEEEeCCChhhhhhcccccccCccEEEEEEeCC----------CHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCC
Q 028986           83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDIT----------SPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADL  151 (200)
Q Consensus        83 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~  151 (200)
                      +.+++||++|++.++..|..++++++++|+|+|++          +..+++....|+..+.... ..++|+++++||+|+
T Consensus       161 v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~DL  240 (340)
T 4fid_A          161 IPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMDL  240 (340)
T ss_dssp             CEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHHH
T ss_pred             eeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECchh
Confidence            68999999999999999999999999999999998          6778888888887776543 468999999999998


Q ss_pred             CCCC---------------cCCHHHHHHHHHH---------------------------cCCeEEEecCCCCCCHHHHHH
Q 028986          152 HEKR---------------EVPAQDGIEYAEK---------------------------NGMFFIETSAKTADNINQLFE  189 (200)
Q Consensus       152 ~~~~---------------~~~~~~~~~~~~~---------------------------~~~~~~~~S~~~~~~i~~~~~  189 (200)
                      ...+               ....+++.+++..                           ..+.++++||+++.+|+.+|.
T Consensus       241 ~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~vF~  320 (340)
T 4fid_A          241 FEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVFM  320 (340)
T ss_dssp             HHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHHHH
T ss_pred             hhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHHHH
Confidence            4311               1234555554432                           236789999999999999999


Q ss_pred             HHHHhhcc
Q 028986          190 VLITCTSS  197 (200)
Q Consensus       190 ~i~~~~~~  197 (200)
                      .+.+.+.+
T Consensus       321 ~v~~~Il~  328 (340)
T 4fid_A          321 LAVDVIMK  328 (340)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99887653

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.82  E-value=5.9e-21  Score=144.52  Aligned_cols=162  Identities=17%  Similarity=0.168  Sum_probs=101.4

Q ss_pred             CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCc------ccc-----------------c---eeE-------------
Q 028986           30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSK------VTV-----------------G---ASF-------------   70 (200)
Q Consensus        30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~------~~~-----------------~---~~~-------------   70 (200)
                      ....++|+|+|.+|+|||||+|+|++..+.+...      ++.                 +   .+.             
T Consensus        23 ~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~  102 (299)
T 2aka_B           23 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR  102 (299)
T ss_dssp             TCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHH
Confidence            3456799999999999999999999987643211      110                 0   000             


Q ss_pred             ----------EEEEEEecCCcEEEEEEEeCCChh-------------hhhhcccccccCccEEE-EEEeCCCHHhHHHHH
Q 028986           71 ----------LSQTIALQDSTTVKFEIWDTAGQE-------------RYAALAPLYYRGAAVAV-VVYDITSPDSFNKAQ  126 (200)
Q Consensus        71 ----------~~~~~~~~~~~~~~~~l~D~~g~~-------------~~~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~  126 (200)
                                ....+.+.......+.+|||||..             .+...+..+++.++.++ +|+|+++..+.....
T Consensus       103 i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~  182 (299)
T 2aka_B          103 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL  182 (299)
T ss_dssp             HCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH
T ss_pred             hcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHH
Confidence                      000000000002479999999953             34556667788888666 799998754433333


Q ss_pred             HHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHH--cC-CeEEEecCCCCCCHHHHHHHHHHh
Q 028986          127 YWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEK--NG-MFFIETSAKTADNINQLFEVLITC  194 (200)
Q Consensus       127 ~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~--~~-~~~~~~S~~~~~~i~~~~~~i~~~  194 (200)
                      .++..+.   ..+.|+++|+||+|+........+.+......  .+ .+++++||+++.|+++++++|.+.
T Consensus       183 ~~~~~~~---~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~  250 (299)
T 2aka_B          183 KIAKEVD---PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  250 (299)
T ss_dssp             HHHHHHC---TTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred             HHHHHhC---CCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence            3444332   45789999999999976543222222210001  12 367899999999999999998764

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.82  E-value=5.3e-21  Score=152.84  Aligned_cols=155  Identities=15%  Similarity=0.138  Sum_probs=89.5

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCC--CCCC----------------------C-------ccccceeEEEEEEEecC
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQ--FDPT----------------------S-------KVTVGASFLSQTIALQD   79 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~--~~~~----------------------~-------~~~~~~~~~~~~~~~~~   79 (200)
                      +..++|+++|+.++|||||+++|+...  +...                      .       ......+.....+... 
T Consensus        41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~-  119 (467)
T 1r5b_A           41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE-  119 (467)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS-
T ss_pred             CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecC-
Confidence            567899999999999999999997521  1100                      0       0001111111112221 


Q ss_pred             CcEEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHH---hHHHHHHHHHHHHHcCCCCCe-EEEEEeCCCCCCCC
Q 028986           80 STTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPD---SFNKAQYWVKELQKHGSPDIV-MALVGNKADLHEKR  155 (200)
Q Consensus        80 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~p-~iiv~nK~D~~~~~  155 (200)
                        ...+.+|||||+++|...+...+..+|++|+|+|+++..   +|+....+...+......++| +++++||+|+....
T Consensus       120 --~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~  197 (467)
T 1r5b_A          120 --HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQ  197 (467)
T ss_dssp             --SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCS
T ss_pred             --CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCcc
Confidence              268999999999999988888999999999999999863   232111222222222233666 99999999985421


Q ss_pred             c------CCHHHHHHHHHHc-------CCeEEEecCCCCCCHHHHH
Q 028986          156 E------VPAQDGIEYAEKN-------GMFFIETSAKTADNINQLF  188 (200)
Q Consensus       156 ~------~~~~~~~~~~~~~-------~~~~~~~S~~~~~~i~~~~  188 (200)
                      .      ...+++..++...       +++++++|+++|.|+.+++
T Consensus       198 ~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~  243 (467)
T 1r5b_A          198 WSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  243 (467)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             ccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence            1      1123455566555       4579999999999998754

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.81  E-value=7.4e-20  Score=156.35  Aligned_cols=163  Identities=14%  Similarity=0.101  Sum_probs=109.6

Q ss_pred             CCCceeeEEEEcCCCCcHHHHHHHHHcCC-------CCCC-------CccccceeEEEEEEEecCCcEEEEEEEeCCChh
Q 028986           29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQ-------FDPT-------SKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE   94 (200)
Q Consensus        29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~-------~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~   94 (200)
                      ..+..++|+++|++++|||||+++|++..       +...       ...+.+.+.....+.+... ...+.+|||||++
T Consensus       292 ~~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~-~~kI~IIDTPGHe  370 (1289)
T 3avx_A          292 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTP-TRHYAHVDCPGHA  370 (1289)
T ss_dssp             CCCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECS-SCEEEEEECCCHH
T ss_pred             ccCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCC-CEEEEEEECCChH
Confidence            34567899999999999999999998731       0000       0011122211111222222 2579999999999


Q ss_pred             hhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCe-EEEEEeCCCCCCCCcC---CHHHHHHHHHHcC
Q 028986           95 RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIV-MALVGNKADLHEKREV---PAQDGIEYAEKNG  170 (200)
Q Consensus        95 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~iiv~nK~D~~~~~~~---~~~~~~~~~~~~~  170 (200)
                      ++...+..++..+|++|+|+|++++... ....++..+...   ++| +++++||+|+....+.   ..+++.+++...+
T Consensus       371 dF~~~mi~gas~AD~aILVVDAtdGv~~-QTrEhL~ll~~l---gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G  446 (1289)
T 3avx_A          371 DYVKNMITGAAQMDGAILVVAATDGPMP-QTREHILLGRQV---GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYD  446 (1289)
T ss_dssp             HHHHHHHHTSCCCSEEEEEEETTTCSCT-THHHHHHHHHHH---TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhhCCEEEEEEcCCccCcH-HHHHHHHHHHHc---CCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcc
Confidence            9988888889999999999999986322 223344444433   577 7899999999753221   1234556666655


Q ss_pred             -----CeEEEecCCCC--------CCHHHHHHHHHHhhc
Q 028986          171 -----MFFIETSAKTA--------DNINQLFEVLITCTS  196 (200)
Q Consensus       171 -----~~~~~~S~~~~--------~~i~~~~~~i~~~~~  196 (200)
                           ++++++||++|        .|+.++++.|.+.+.
T Consensus       447 ~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip  485 (1289)
T 3avx_A          447 FPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP  485 (1289)
T ss_dssp             SCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred             ccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence                 68999999999        468999999887654

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.81  E-value=1.4e-21  Score=156.23  Aligned_cols=154  Identities=13%  Similarity=0.184  Sum_probs=104.0

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA  110 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  110 (200)
                      .+..+|+++|+.++|||||+++|.+..+.....+..+.+.....+.. ++  ..+.+|||||++.+...+...+..+|++
T Consensus         2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~-~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~a   78 (501)
T 1zo1_I            2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVET-EN--GMITFLDTPGHAAFTSMRARGAQATDIV   78 (501)
T ss_dssp             CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCT-TS--SCCCEECCCTTTCCTTSBCSSSBSCSSE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEE-CC--EEEEEEECCCcHHHHHHHHHHHhhCCEE
Confidence            34678999999999999999999875433222221221111111222 22  3689999999999999999999999999


Q ss_pred             EEEEeCCCH---HhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCC--cCCHH--HHHHHHHHc--CCeEEEecCCCC
Q 028986          111 VVVYDITSP---DSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKR--EVPAQ--DGIEYAEKN--GMFFIETSAKTA  181 (200)
Q Consensus       111 i~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~--~~~~~--~~~~~~~~~--~~~~~~~S~~~~  181 (200)
                      ++|+|+++.   .+.+.+    ..+.   ..++|+++++||+|+....  .+..+  +...++..+  .++++++||++|
T Consensus        79 ILVVda~~g~~~qT~e~l----~~~~---~~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG  151 (501)
T 1zo1_I           79 VLVVAADDGVMPQTIEAI----QHAK---AAQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAG  151 (501)
T ss_dssp             EEEEETTTBSCTTTHHHH----HHHH---HTTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTC
T ss_pred             EEEeecccCccHHHHHHH----HHHH---hcCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeec
Confidence            999999874   333322    2222   2368899999999996431  11110  000011222  268999999999


Q ss_pred             CCHHHHHHHHHHh
Q 028986          182 DNINQLFEVLITC  194 (200)
Q Consensus       182 ~~i~~~~~~i~~~  194 (200)
                      .|+++++++|...
T Consensus       152 ~gI~eLle~I~~~  164 (501)
T 1zo1_I          152 TGIDELLDAILLQ  164 (501)
T ss_dssp             TTCTTHHHHTTTT
T ss_pred             cCcchhhhhhhhh
Confidence            9999999998764

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.81  E-value=1.4e-19  Score=130.06  Aligned_cols=157  Identities=18%  Similarity=0.146  Sum_probs=98.1

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChh----------hhhhcc
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE----------RYAALA  100 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~----------~~~~~~  100 (200)
                      ....+|+++|++|||||||+++|.+..+.....++.+.......+.+.+    .+.+||+||..          .+....
T Consensus        24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~   99 (210)
T 1pui_A           24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD----GKRLVDLPGYGYAEVPEEMKRKWQRAL   99 (210)
T ss_dssp             SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET----TEEEEECCCCC------CCHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC----CEEEEECcCCcccccCHHHHHHHHHHH
Confidence            4557899999999999999999998764333334444443333333322    37899999963          222223


Q ss_pred             cccc---cCccEEEEEEeCCCHHhHH--HHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcC--CHHHHHHHHHHcC--C
Q 028986          101 PLYY---RGAAVAVVVYDITSPDSFN--KAQYWVKELQKHGSPDIVMALVGNKADLHEKREV--PAQDGIEYAEKNG--M  171 (200)
Q Consensus       101 ~~~~---~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~--~~~~~~~~~~~~~--~  171 (200)
                      ..++   ..++++++++|++.+.+..  .+..|+   .   ..+.|+++|+||+|+....+.  ..+.+..++...+  +
T Consensus       100 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~---~---~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~  173 (210)
T 1pui_A          100 GEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWA---V---DSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDV  173 (210)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHH---H---HTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCE
T ss_pred             HHHHHhhhcccEEEEEEECCCCCchhHHHHHHHH---H---HcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCC
Confidence            3333   4689999999998764432  222232   2   236789999999997653211  1234444554443  4


Q ss_pred             eEEEecCCCCCCHHHHHHHHHHhhcc
Q 028986          172 FFIETSAKTADNINQLFEVLITCTSS  197 (200)
Q Consensus       172 ~~~~~S~~~~~~i~~~~~~i~~~~~~  197 (200)
                      .++++|++++.++++++++|.+.+.+
T Consensus       174 ~~~~~Sal~~~~~~~l~~~l~~~~~~  199 (210)
T 1pui_A          174 QVETFSSLKKQGVDKLRQKLDTWFSE  199 (210)
T ss_dssp             EEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred             ceEEEeecCCCCHHHHHHHHHHHHhh
Confidence            68899999999999999999987754

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.80  E-value=2.5e-19  Score=149.13  Aligned_cols=164  Identities=17%  Similarity=0.212  Sum_probs=107.1

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCc-cccce-eEE------EEEEEecCCcE--------------------
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSK-VTVGA-SFL------SQTIALQDSTT--------------------   82 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~-~~~~~-~~~------~~~~~~~~~~~--------------------   82 (200)
                      ...++|+|+|.+|+|||||+|+|++....+... ++... ...      ..++.+.++..                    
T Consensus        67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~  146 (695)
T 2j69_A           67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA  146 (695)
T ss_dssp             HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence            457899999999999999999999977544322 21100 000      00111101000                    


Q ss_pred             ---------------------------EEEEEEeCCChhh---hhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHH
Q 028986           83 ---------------------------VKFEIWDTAGQER---YAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKEL  132 (200)
Q Consensus        83 ---------------------------~~~~l~D~~g~~~---~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i  132 (200)
                                                 ..+.+|||||...   ....+..+++.+|++|+|+|++++.+......|...+
T Consensus       147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l  226 (695)
T 2j69_A          147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYI  226 (695)
T ss_dssp             HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHT
T ss_pred             HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHH
Confidence                                       2589999999765   3345567889999999999999887776666554444


Q ss_pred             HHcCCCCCeEEEEEeCCCCCCCCcCCHH----------HHHHH----H-HH--------cCCeEEEecCC----------
Q 028986          133 QKHGSPDIVMALVGNKADLHEKREVPAQ----------DGIEY----A-EK--------NGMFFIETSAK----------  179 (200)
Q Consensus       133 ~~~~~~~~p~iiv~nK~D~~~~~~~~~~----------~~~~~----~-~~--------~~~~~~~~S~~----------  179 (200)
                      .   ..+.|+++|+||+|+........+          .+...    . ..        ...+++++|++          
T Consensus       227 ~---~~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~  303 (695)
T 2j69_A          227 K---GRGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNP  303 (695)
T ss_dssp             T---TSCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCT
T ss_pred             H---hhCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCc
Confidence            3   236789999999998644311111          11111    1 11        12368999999          


Q ss_pred             ----CCCCHHHHHHHHHHhhcc
Q 028986          180 ----TADNINQLFEVLITCTSS  197 (200)
Q Consensus       180 ----~~~~i~~~~~~i~~~~~~  197 (200)
                          ++.|+++++++|.+.+.+
T Consensus       304 ~~~~~~~Gi~~L~~~L~~~l~~  325 (695)
T 2j69_A          304 QADLDGTGFPKFMDSLNTFLTR  325 (695)
T ss_dssp             TCCCTTSSHHHHHHHHHHHHHH
T ss_pred             hhhhhccCHHHHHHHHHHHHHH
Confidence                999999999999887643

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.79  E-value=8.6e-19  Score=130.36  Aligned_cols=124  Identities=19%  Similarity=0.140  Sum_probs=81.0

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCc-cccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccc-----
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSK-VTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYY-----  104 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~-----  104 (200)
                      ...++|+++|.+|+|||||+++|++........ +..........+...+   ..+.+|||||+.++......++     
T Consensus        34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~---~~l~liDTpG~~~~~~~~~~~~~~i~~  110 (262)
T 3def_A           34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG---FTINIIDTPGLVEAGYVNHQALELIKG  110 (262)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT---EEEEEEECCCSEETTEECHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC---eeEEEEECCCCCCcccchHHHHHHHHH
Confidence            467999999999999999999999977532222 1122222222233322   5899999999866544333333     


Q ss_pred             ----cCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCC--CeEEEEEeCCCCCCCCcC
Q 028986          105 ----RGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPD--IVMALVGNKADLHEKREV  157 (200)
Q Consensus       105 ----~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~p~iiv~nK~D~~~~~~~  157 (200)
                          ..+|++++|++++..........|+..+......+  .|+++|+||+|+......
T Consensus       111 ~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~  169 (262)
T 3def_A          111 FLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDEL  169 (262)
T ss_dssp             HTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTC
T ss_pred             HHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCc
Confidence                26899999999876542223345666666543333  489999999998644333

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.79  E-value=1e-19  Score=145.11  Aligned_cols=150  Identities=13%  Similarity=0.144  Sum_probs=99.0

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcC--CCCCC------------------C-----------ccccceeEEEEEEEecC
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRG--QFDPT------------------S-----------KVTVGASFLSQTIALQD   79 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~--~~~~~------------------~-----------~~~~~~~~~~~~~~~~~   79 (200)
                      +..++|+++|++++|||||+++|++.  .+...                  +           ......+.....+..  
T Consensus         5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~--   82 (458)
T 1f60_A            5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET--   82 (458)
T ss_dssp             CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEEC--
T ss_pred             CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEec--
Confidence            45789999999999999999999864  11110                  0           001111111112222  


Q ss_pred             CcEEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHH---hHH---HHHHHHHHHHHcCCCCCe-EEEEEeCCCCC
Q 028986           80 STTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPD---SFN---KAQYWVKELQKHGSPDIV-MALVGNKADLH  152 (200)
Q Consensus        80 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~i~~~~~~~~p-~iiv~nK~D~~  152 (200)
                      . ...+.+|||||++++...+..++..+|++|+|+|+++..   +|+   ....++..+..   .++| +++|+||+|+.
T Consensus        83 ~-~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~---~~v~~iivviNK~Dl~  158 (458)
T 1f60_A           83 P-KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT---LGVRQLIVAVNKMDSV  158 (458)
T ss_dssp             S-SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH---TTCCEEEEEEECGGGG
T ss_pred             C-CceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH---cCCCeEEEEEEccccc
Confidence            2 268999999999999988888999999999999999763   221   22223333332   2454 89999999986


Q ss_pred             CCCc----CCHHHHHHHHHHcC-----CeEEEecCCCCCCHHH
Q 028986          153 EKRE----VPAQDGIEYAEKNG-----MFFIETSAKTADNINQ  186 (200)
Q Consensus       153 ~~~~----~~~~~~~~~~~~~~-----~~~~~~S~~~~~~i~~  186 (200)
                      ...+    ...+++..++..++     ++++++||++|.|+.+
T Consensus       159 ~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~  201 (458)
T 1f60_A          159 KWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE  201 (458)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred             cCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCccc
Confidence            3211    11234445555554     6899999999999864

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.79  E-value=1.6e-18  Score=143.77  Aligned_cols=117  Identities=12%  Similarity=0.067  Sum_probs=80.0

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCcc----------------ccceeEEEEEEEecCCcEEEEEEEeCCChh
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKV----------------TVGASFLSQTIALQDSTTVKFEIWDTAGQE   94 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~   94 (200)
                      ....+|+|+|+.|+|||||+++|++.........                ..+..+......+... .+.+.+|||||+.
T Consensus         7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~~~~nliDTpG~~   85 (665)
T 2dy1_A            7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFR-GHRVFLLDAPGYG   85 (665)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEET-TEEEEEEECCCSG
T ss_pred             CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeC-CEEEEEEeCCCcc
Confidence            4456899999999999999999995332110000                0111221222222222 2789999999999


Q ss_pred             hhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCC
Q 028986           95 RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLH  152 (200)
Q Consensus        95 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~  152 (200)
                      ++...+..+++.+|++++|+|+.+...... ..++..+..   .++|+++|+||+|+.
T Consensus        86 ~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt-~~~~~~~~~---~~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           86 DFVGEIRGALEAADAALVAVSAEAGVQVGT-ERAWTVAER---LGLPRMVVVTKLDKG  139 (665)
T ss_dssp             GGHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHH---TTCCEEEEEECGGGC
T ss_pred             chHHHHHHHHhhcCcEEEEEcCCcccchhH-HHHHHHHHH---ccCCEEEEecCCchh
Confidence            988888889999999999999887643322 344444443   368899999999986

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.78  E-value=1e-19  Score=141.21  Aligned_cols=155  Identities=15%  Similarity=0.139  Sum_probs=102.3

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEE-----------------------------------------
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLS-----------------------------------------   72 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~-----------------------------------------   72 (200)
                      .+|+|+|++|||||||+++|++..+.+............                                         
T Consensus        35 p~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~  114 (360)
T 3t34_A           35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRE  114 (360)
T ss_dssp             CEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHHh
Confidence            389999999999999999999987644332211100000                                         


Q ss_pred             -----------EEEEecCCcEEEEEEEeCCChhhh-------------hhcccccccCccEEEEEEeCCCHHhHHHHHHH
Q 028986           73 -----------QTIALQDSTTVKFEIWDTAGQERY-------------AALAPLYYRGAAVAVVVYDITSPDSFNKAQYW  128 (200)
Q Consensus        73 -----------~~~~~~~~~~~~~~l~D~~g~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~  128 (200)
                                 ..+.+.......+.+|||||...+             ......++.++|++|+++|..+.+...  ..|
T Consensus       115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~~  192 (360)
T 3t34_A          115 TGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SDA  192 (360)
T ss_dssp             SCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CHH
T ss_pred             cCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HHH
Confidence                       001111111135899999996554             456677889999999999876533221  334


Q ss_pred             HHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Q 028986          129 VKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEV  190 (200)
Q Consensus       129 ~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~  190 (200)
                      +..+......+.|+++|+||+|+........+....+...++.+|+.++++.+.++++.+.+
T Consensus       193 ~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~  254 (360)
T 3t34_A          193 IKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDM  254 (360)
T ss_dssp             HHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCH
T ss_pred             HHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCH
Confidence            55555555667899999999999766554444444444446778999999998887765544

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.78  E-value=2.2e-18  Score=135.11  Aligned_cols=159  Identities=18%  Similarity=0.155  Sum_probs=105.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhh----hhhccccc---ccCc
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQER----YAALAPLY---YRGA  107 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----~~~~~~~~---~~~~  107 (200)
                      .|+|+|++|||||||+++|.+........+..........+...+.  ..+.+||+||..+    ...+...+   +..+
T Consensus       159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~--~~~~l~DtpGli~~a~~~~~L~~~fl~~~era  236 (416)
T 1udx_A          159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEE--ERFTLADIPGIIEGASEGKGLGLEFLRHIART  236 (416)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSS--CEEEEEECCCCCCCGGGSCCSCHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCc--ceEEEEeccccccchhhhhhhhHHHHHHHHHH
Confidence            5789999999999999999986421111111111111222333221  4689999999632    11122222   3568


Q ss_pred             cEEEEEEeCCCHHhHHHHHHHHHHHHHcC--CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHH
Q 028986          108 AVAVVVYDITSPDSFNKAQYWVKELQKHG--SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNIN  185 (200)
Q Consensus       108 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~  185 (200)
                      +.+++++|++ ...+..+..|...+....  ....|.++|+||+|+...  ...+.+.+.+...+++++.+||+++.+++
T Consensus       237 ~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~--~~~~~l~~~l~~~g~~vi~iSA~~g~gi~  313 (416)
T 1udx_A          237 RVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE--EAVKALADALAREGLAVLPVSALTGAGLP  313 (416)
T ss_dssp             SEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH--HHHHHHHHHHHTTTSCEEECCTTTCTTHH
T ss_pred             HhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH--HHHHHHHHHHHhcCCeEEEEECCCccCHH
Confidence            9999999998 555666766666655442  125788999999998653  22334445555567899999999999999


Q ss_pred             HHHHHHHHhhccc
Q 028986          186 QLFEVLITCTSSY  198 (200)
Q Consensus       186 ~~~~~i~~~~~~~  198 (200)
                      +++++|.+.+.+.
T Consensus       314 eL~~~i~~~l~~~  326 (416)
T 1udx_A          314 ALKEALHALVRST  326 (416)
T ss_dssp             HHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999988654

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.77  E-value=7.5e-21  Score=155.61  Aligned_cols=160  Identities=22%  Similarity=0.198  Sum_probs=88.4

Q ss_pred             CCceeeEEEEcCCCCcHHHHHHHHHcCCCC-------------------------------CCCccccceeEEEEEEEec
Q 028986           30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFD-------------------------------PTSKVTVGASFLSQTIALQ   78 (200)
Q Consensus        30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~   78 (200)
                      .+..++|+|+|++++|||||+++|+.....                               ....+..+.+.....+.. 
T Consensus       174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~-  252 (592)
T 3mca_A          174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES-  252 (592)
T ss_dssp             CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe-
Confidence            456789999999999999999999642100                               000111111111111111 


Q ss_pred             CCcEEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHH---hH---HHHHHHHHHHHHcCCCCCe-EEEEEeCCCC
Q 028986           79 DSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPD---SF---NKAQYWVKELQKHGSPDIV-MALVGNKADL  151 (200)
Q Consensus        79 ~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~i~~~~~~~~p-~iiv~nK~D~  151 (200)
                        ....+.||||||++++...+...+..+|++|+|+|++++.   .+   ......+..+...   ++| +|+|+||+|+
T Consensus       253 --~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l---gip~iIvviNKiDl  327 (592)
T 3mca_A          253 --DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL---GISEIVVSVNKLDL  327 (592)
T ss_dssp             --------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS---SCCCEEEEEECGGG
T ss_pred             --CCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc---CCCeEEEEEecccc
Confidence              2257899999999999988888999999999999998532   11   1112222223322   454 8999999998


Q ss_pred             CCCCcCCH----HHHHHHH-HHcCC-----eEEEecCCCCCCHH--------------HHHHHHHHhh
Q 028986          152 HEKREVPA----QDGIEYA-EKNGM-----FFIETSAKTADNIN--------------QLFEVLITCT  195 (200)
Q Consensus       152 ~~~~~~~~----~~~~~~~-~~~~~-----~~~~~S~~~~~~i~--------------~~~~~i~~~~  195 (200)
                      ........    +++..++ ...++     +++++||++|.|+.              .+++.|.+.+
T Consensus       328 ~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~  395 (592)
T 3mca_A          328 MSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLV  395 (592)
T ss_dssp             GTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSC
T ss_pred             ccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhc
Confidence            65321111    2233333 33343     79999999999998              6777776543

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.77  E-value=1.2e-18  Score=132.77  Aligned_cols=112  Identities=16%  Similarity=0.109  Sum_probs=69.7

Q ss_pred             EEEEEEeCCChhh-------------hhhcccccccCccEEEEEEeCCCHH-hHHHHHHHHHHHHHcCCCCCeEEEEEeC
Q 028986           83 VKFEIWDTAGQER-------------YAALAPLYYRGAAVAVVVYDITSPD-SFNKAQYWVKELQKHGSPDIVMALVGNK  148 (200)
Q Consensus        83 ~~~~l~D~~g~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~iiv~nK  148 (200)
                      ..+.+|||||...             +...+..++..+|++++|+|..+.. .......+...+   ...+.|+++|+||
T Consensus       131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~---~~~~~~~i~v~NK  207 (315)
T 1jwy_B          131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEV---DPEGKRTIGVITK  207 (315)
T ss_dssp             CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHH---CSSCSSEEEEEEC
T ss_pred             CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHh---CCCCCcEEEEEcC
Confidence            4699999999642             4556677889999999999974322 111111222222   2457899999999


Q ss_pred             CCCCCCCcCCHHHHHHHHHHcCCeEEEecCC---C---CCCHHHHHHHHHHhhcc
Q 028986          149 ADLHEKREVPAQDGIEYAEKNGMFFIETSAK---T---ADNINQLFEVLITCTSS  197 (200)
Q Consensus       149 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~---~---~~~i~~~~~~i~~~~~~  197 (200)
                      +|+........+.+......++..++++++.   +   +.|+.++++.+.+.+.+
T Consensus       208 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~  262 (315)
T 1jwy_B          208 LDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKN  262 (315)
T ss_dssp             TTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHT
T ss_pred             cccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhC
Confidence            9997654322222221111122456666554   4   68899999998877654

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.76  E-value=1.7e-19  Score=136.51  Aligned_cols=166  Identities=13%  Similarity=0.184  Sum_probs=86.2

Q ss_pred             CCCceeeEEEEcCCCCcHHHHHHHHHcC-CCCCCCcc------ccceeEEEEEEEec-CCcEEEEEEEeCCCh-------
Q 028986           29 AKNLRVKLVLLGDSGVGKSCIVLRFVRG-QFDPTSKV------TVGASFLSQTIALQ-DSTTVKFEIWDTAGQ-------   93 (200)
Q Consensus        29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~-~~~~~~~~------~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~-------   93 (200)
                      .....++|+|+|++|+|||||+++|++. .++....+      +.........+... .+....+++||++|.       
T Consensus        14 l~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~   93 (301)
T 2qnr_A           14 KKGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCR   93 (301)
T ss_dssp             ----CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC---------
T ss_pred             EcCCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcH
Confidence            3456789999999999999999999875 33222100      01111111112221 233468999999997       


Q ss_pred             hhhhhccc-------cccc-------------CccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCC
Q 028986           94 ERYAALAP-------LYYR-------------GAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE  153 (200)
Q Consensus        94 ~~~~~~~~-------~~~~-------------~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~  153 (200)
                      +.+.....       .+++             .+++++|+.+++.. +++...  ...+... ....++++|+||.|+..
T Consensus        94 e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~-~Ld~~~--~~~l~~l-~~~~~iilV~~K~Dl~~  169 (301)
T 2qnr_A           94 DCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH-GLKPLD--VAFMKAI-HNKVNIVPVIAKADTLT  169 (301)
T ss_dssp             --CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSS-SCCHHH--HHHHHHH-TTTSCEEEEECCGGGSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCccc-CCCHHH--HHHHHHH-HhcCCEEEEEEeCCCCC
Confidence            33333322       2221             23445666554321 222222  1233333 34678999999999875


Q ss_pred             CCcC--CHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHhhcccC
Q 028986          154 KREV--PAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLITCTSSYC  199 (200)
Q Consensus       154 ~~~~--~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~~~~~~  199 (200)
                      ..+.  ..+++.+++..++++++++||+++ +++++|.++.+.+.+..
T Consensus       170 ~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~~  216 (301)
T 2qnr_A          170 LKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKASI  216 (301)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcCC
Confidence            4332  235677888889999999999999 99999999998876543

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.76  E-value=1e-17  Score=139.41  Aligned_cols=115  Identities=17%  Similarity=0.176  Sum_probs=81.5

Q ss_pred             CCceeeEEEEcCCCCcHHHHHHHHHcC--CCC------C------------CCccccceeEEEEEEEecCCcEEEEEEEe
Q 028986           30 KNLRVKLVLLGDSGVGKSCIVLRFVRG--QFD------P------------TSKVTVGASFLSQTIALQDSTTVKFEIWD   89 (200)
Q Consensus        30 ~~~~~~i~i~G~~~sGKSsli~~l~~~--~~~------~------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D   89 (200)
                      .++..+|+|+|++++|||||+++|+..  .+.      .            ....+....  ...+...   .+.+.+||
T Consensus         9 ~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~--~~~~~~~---~~~i~liD   83 (691)
T 1dar_A            9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAA--VTTCFWK---DHRINIID   83 (691)
T ss_dssp             GGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CC--EEEEEET---TEEEEEEC
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccc--eEEEEEC---CeEEEEEE
Confidence            456789999999999999999999842  110      0            011111111  1122222   26899999


Q ss_pred             CCChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCC
Q 028986           90 TAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE  153 (200)
Q Consensus        90 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~  153 (200)
                      |||+.++...+..+++.+|++|+|+|+++..+......|.. +..   .++|+++|+||+|+..
T Consensus        84 TPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~---~~~p~ivviNKiD~~~  143 (691)
T 1dar_A           84 TPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK---YKVPRIAFANKMDKTG  143 (691)
T ss_dssp             CCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTT
T ss_pred             CcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH---cCCCEEEEEECCCccc
Confidence            99999888888899999999999999998776666555543 333   3788999999999864

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.75  E-value=8.3e-18  Score=125.55  Aligned_cols=123  Identities=13%  Similarity=0.097  Sum_probs=78.2

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcc-------cc-
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALA-------PL-  102 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~-------~~-  102 (200)
                      ...++|+++|.+|+|||||+|+|++..+..... ..+.+........... ...+.+|||||..++....       .. 
T Consensus        37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~-~~~~t~~~~~~~~~~~-~~~l~iiDTpG~~~~~~~~~~~~~~i~~~  114 (270)
T 1h65_A           37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISP-FQSEGPRPVMVSRSRA-GFTLNIIDTPGLIEGGYINDMALNIIKSF  114 (270)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCS-SSCCCSSCEEEEEEET-TEEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCcccccC-CCCcceeeEEEEEeeC-CeEEEEEECCCCCCCccchHHHHHHHHHH
Confidence            457999999999999999999999877532221 1111111111222112 2689999999975443211       11 


Q ss_pred             -cccCccEEEEEEeCCCHHhHH-HHHHHHHHHHHcCCCC--CeEEEEEeCCCCCCCCc
Q 028986          103 -YYRGAAVAVVVYDITSPDSFN-KAQYWVKELQKHGSPD--IVMALVGNKADLHEKRE  156 (200)
Q Consensus       103 -~~~~~d~~i~v~d~~~~~s~~-~~~~~~~~i~~~~~~~--~p~iiv~nK~D~~~~~~  156 (200)
                       ....+|+++||+|++... +. ....|+..+......+  .|+++|+||+|+.....
T Consensus       115 ~~~~~~d~il~v~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~  171 (270)
T 1h65_A          115 LLDKTIDVLLYVDRLDAYR-VDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDG  171 (270)
T ss_dssp             TTTCEECEEEEEEESSCCC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGG
T ss_pred             hhcCCCCEEEEEEeCCCCc-CCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCC
Confidence             134699999999987532 32 2245666665543323  68999999999865543

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.74  E-value=4.8e-17  Score=131.51  Aligned_cols=118  Identities=14%  Similarity=0.112  Sum_probs=77.4

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCC-----------c---------cccceeEEEEEEEecCCcEEEEEEEeC
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTS-----------K---------VTVGASFLSQTIALQDSTTVKFEIWDT   90 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~-----------~---------~~~~~~~~~~~~~~~~~~~~~~~l~D~   90 (200)
                      .+..+|+|+|++++|||||+++|+........           .         ...+.+.......+.. ....+.+|||
T Consensus        11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-~~~~i~liDT   89 (529)
T 2h5e_A           11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPY-HDCLVNLLDT   89 (529)
T ss_dssp             HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEE-TTEEEEEECC
T ss_pred             cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEE-CCeEEEEEEC
Confidence            45789999999999999999999973211000           0         0001111000111111 2268999999


Q ss_pred             CChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCC
Q 028986           91 AGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE  153 (200)
Q Consensus        91 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~  153 (200)
                      ||+.++...+..++..+|++|+|+|+++..... ...++..+   ...++|+++++||+|+..
T Consensus        90 PG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~-t~~~~~~~---~~~~ipiivviNK~Dl~~  148 (529)
T 2h5e_A           90 PGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDR-TRKLMEVT---RLRDTPILTFMNKLDRDI  148 (529)
T ss_dssp             CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHH-HHHHHHHH---TTTTCCEEEEEECTTSCC
T ss_pred             CCChhHHHHHHHHHHHCCEEEEEEeCCccchHH-HHHHHHHH---HHcCCCEEEEEcCcCCcc
Confidence            999988888888899999999999999763222 22232322   234789999999999864

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.74  E-value=4.2e-18  Score=133.61  Aligned_cols=160  Identities=14%  Similarity=0.197  Sum_probs=81.9

Q ss_pred             CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCc--------cccceeEEEEEEEec-CCcEEEEEEEeCCChhhhh--
Q 028986           29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSK--------VTVGASFLSQTIALQ-DSTTVKFEIWDTAGQERYA--   97 (200)
Q Consensus        29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~--------~~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~--   97 (200)
                      .....++|+|+|++|+|||||++.|++..+.....        .+....  .....+. .+....+++||++|.....  
T Consensus        27 l~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~--~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~  104 (418)
T 2qag_C           27 KRGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVE--QSKVLIKEGGVQLLLTIVDTPGFGDAVDN  104 (418)
T ss_dssp             C-CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEE--EEECC------CEEEEEEECC--------
T ss_pred             ecCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeee--eEEEEEecCCcccceeeeechhhhhhccc
Confidence            34567889999999999999999999876532211        111111  1111111 2223579999999965421  


Q ss_pred             -----h------------------cccccccCccE--EEEEEeCCCHHhHHHH-HHHHHHHHHcCCCCCeEEEEEeCCCC
Q 028986           98 -----A------------------LAPLYYRGAAV--AVVVYDITSPDSFNKA-QYWVKELQKHGSPDIVMALVGNKADL  151 (200)
Q Consensus        98 -----~------------------~~~~~~~~~d~--~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~D~  151 (200)
                           .                  +...++.++++  ++|+.+.+. .++... ..|+..+.    .++|+|+|+||+|+
T Consensus       105 ~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~-~~L~~~d~~~lk~L~----~~v~iIlVinK~Dl  179 (418)
T 2qag_C          105 SNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSG-HGLKPLDIEFMKRLH----EKVNIIPLIAKADT  179 (418)
T ss_dssp             ---CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-C-CSCCHHHHHHHHHHT----TTSEEEEEEESTTS
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcc-cCCCHHHHHHHHHHh----ccCcEEEEEEcccC
Confidence                 1                  12334555554  444444331 223333 24555553    37899999999998


Q ss_pred             CCCCcCCH--HHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHhh
Q 028986          152 HEKREVPA--QDGIEYAEKNGMFFIETSAKTADNINQLFEVLITCT  195 (200)
Q Consensus       152 ~~~~~~~~--~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~~  195 (200)
                      ....++..  +.+.+.+..++++++++|++++.++.++|..|.+.+
T Consensus       180 l~~~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~i  225 (418)
T 2qag_C          180 LTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL  225 (418)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHTCCCCCCC-----------------C
T ss_pred             ccHHHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhC
Confidence            76544433  566777778899999999999999999888777654

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.73  E-value=3.5e-18  Score=133.66  Aligned_cols=86  Identities=19%  Similarity=0.126  Sum_probs=47.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcCCCCCCCcc--ccceeEEEEEEE-------------------ecCCcEEEEEEEeCCC
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKV--TVGASFLSQTIA-------------------LQDSTTVKFEIWDTAG   92 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~--~~~~~~~~~~~~-------------------~~~~~~~~~~l~D~~g   92 (200)
                      ++|+|+|.+|||||||+|+|++........+  |.........+.                   +.....+++.+|||||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG   80 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence            5899999999999999999998762211111  111111111111                   1111246899999999


Q ss_pred             hhh----hhhccc---ccccCccEEEEEEeCCCH
Q 028986           93 QER----YAALAP---LYYRGAAVAVVVYDITSP  119 (200)
Q Consensus        93 ~~~----~~~~~~---~~~~~~d~~i~v~d~~~~  119 (200)
                      ...    ...+..   .+++.+|++++|+|+++.
T Consensus        81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTCC
T ss_pred             cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence            743    222222   457889999999999874

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.73  E-value=1.8e-16  Score=132.10  Aligned_cols=119  Identities=14%  Similarity=0.086  Sum_probs=81.1

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCC--CCCC------C----------ccccceeEEEEEEEec----CCcEEEEEEE
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQ--FDPT------S----------KVTVGASFLSQTIALQ----DSTTVKFEIW   88 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~--~~~~------~----------~~~~~~~~~~~~~~~~----~~~~~~~~l~   88 (200)
                      ++..+|+|+|+.++|||||+++|+...  +...      .          ............+.+.    ++..+.+.+|
T Consensus         8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~li   87 (704)
T 2rdo_7            8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINII   87 (704)
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEE
Confidence            456799999999999999999997531  1100      0          0001111111122222    2334789999


Q ss_pred             eCCChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCC
Q 028986           89 DTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE  153 (200)
Q Consensus        89 D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~  153 (200)
                      ||||+.++...+..+++.+|++|+|+|+++.........| ..+.   ..++|+++|+||+|+..
T Consensus        88 DTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~-~~~~---~~~ip~ilviNKiD~~~  148 (704)
T 2rdo_7           88 DTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVW-RQAN---KYKVPRIAFVNKMDRMG  148 (704)
T ss_pred             eCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHH-HHHH---HcCCCEEEEEeCCCccc
Confidence            9999999888888899999999999999987554444433 2232   33788999999999854

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.73  E-value=1.4e-18  Score=131.49  Aligned_cols=134  Identities=23%  Similarity=0.218  Sum_probs=107.9

Q ss_pred             HHHHHHHcCCCC-CCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHH-hHHHH
Q 028986           48 CIVLRFVRGQFD-PTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPD-SFNKA  125 (200)
Q Consensus        48 sli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~  125 (200)
                      +|+.+++.+.|. ..+.++.+..+. ..  .....  .+.+||+  ++++..++..+++++|++|+|||++++. +++.+
T Consensus        32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~--~~~~~--~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l  104 (301)
T 1u0l_A           32 ERILCKLRGKFRLQNLKIYVGDRVE-YT--PDETG--SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYII  104 (301)
T ss_dssp             CEEEEEECGGGTTTTCCCCTTCEEE-EE--CCCSS--SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHH
T ss_pred             cEEEEEEcccccccCCCCCCccEEE-EE--EcCCC--eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHH
Confidence            678888888877 778888885553 22  22222  6899999  8889999999999999999999999987 78888


Q ss_pred             HHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcC--CeEEEecCCCCCCHHHHHHHHHH
Q 028986          126 QYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNG--MFFIETSAKTADNINQLFEVLIT  193 (200)
Q Consensus       126 ~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~S~~~~~~i~~~~~~i~~  193 (200)
                      ..|+..+..   .++|+++|+||+|+...+.+  ++..+++..++  ++++++||+++.|++++|.++..
T Consensus       105 ~~~l~~~~~---~~~piilv~NK~DL~~~~~v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g  169 (301)
T 1u0l_A          105 DKFLVLAEK---NELETVMVINKMDLYDEDDL--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG  169 (301)
T ss_dssp             HHHHHHHHH---TTCEEEEEECCGGGCCHHHH--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred             HHHHHHHHH---CCCCEEEEEeHHHcCCchhH--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence            999987765   37899999999998654332  44667777777  89999999999999999988754

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.72  E-value=1.5e-16  Score=132.42  Aligned_cols=116  Identities=17%  Similarity=0.167  Sum_probs=80.2

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHc--CCCCCC---Cc-------------cccceeEEEEEEEecCCcEEEEEEEeCCC
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVR--GQFDPT---SK-------------VTVGASFLSQTIALQDSTTVKFEIWDTAG   92 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~--~~~~~~---~~-------------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g   92 (200)
                      .+..+|+|+|++|+|||||+++|+.  ..+...   ..             ...........+...   ...+.+|||||
T Consensus         8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~---~~~i~liDTPG   84 (693)
T 2xex_A            8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWE---GHRVNIIDTPG   84 (693)
T ss_dssp             TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEET---TEEEEEECCCC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEEC---CeeEEEEECcC
Confidence            4567999999999999999999985  221100   00             000011111112222   26899999999


Q ss_pred             hhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCC
Q 028986           93 QERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE  153 (200)
Q Consensus        93 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~  153 (200)
                      +.++...+..+++.+|++|+|+|+++..+......|. .+..   .++|+++|+||+|+..
T Consensus        85 ~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~-~~~~---~~~p~ilviNK~Dl~~  141 (693)
T 2xex_A           85 HVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWR-QATT---YGVPRIVFVNKMDKLG  141 (693)
T ss_dssp             CSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHH-HHHH---TTCCEEEEEECTTSTT
T ss_pred             CcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHH-HHHH---cCCCEEEEEECCCccc
Confidence            9888888888899999999999999876665555443 3433   3788999999999864

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.68  E-value=8.3e-19  Score=127.53  Aligned_cols=156  Identities=15%  Similarity=0.164  Sum_probs=92.3

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEE------------EEEEEecCCcE-----------------
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFL------------SQTIALQDSTT-----------------   82 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~-----------------   82 (200)
                      ..++|+|+|.+|||||||+++|+...+......+...++.            ...+.+..+..                 
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~  116 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL  116 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence            4679999999999999999999986544433333333221            11111211110                 


Q ss_pred             --EEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHH
Q 028986           83 --VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQ  160 (200)
Q Consensus        83 --~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~  160 (200)
                        ..+.++|++|.-...   ..+-...+..+.++|.........  .+...      ...|.++|+||+|+........+
T Consensus       117 ~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~~--~~~~~------~~~~~iiv~NK~Dl~~~~~~~~~  185 (226)
T 2hf9_A          117 DEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTIE--KHPGI------MKTADLIVINKIDLADAVGADIK  185 (226)
T ss_dssp             GGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTTT--TCHHH------HTTCSEEEEECGGGHHHHTCCHH
T ss_pred             CCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhHh--hhhhH------hhcCCEEEEeccccCchhHHHHH
Confidence              135555555521000   011122345566676432111100  00011      13578999999998654334566


Q ss_pred             HHHHHHHHc--CCeEEEecCCCCCCHHHHHHHHHHhhccc
Q 028986          161 DGIEYAEKN--GMFFIETSAKTADNINQLFEVLITCTSSY  198 (200)
Q Consensus       161 ~~~~~~~~~--~~~~~~~S~~~~~~i~~~~~~i~~~~~~~  198 (200)
                      +..+++..+  +++++++||++|.|++++|++|.+.+.++
T Consensus       186 ~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~  225 (226)
T 2hf9_A          186 KMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKEV  225 (226)
T ss_dssp             HHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHhh
Confidence            666776654  67899999999999999999999888654

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.68  E-value=6.5e-17  Score=117.11  Aligned_cols=156  Identities=15%  Similarity=0.117  Sum_probs=94.7

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEE------------EEEEEecC-----------------CcE
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFL------------SQTIALQD-----------------STT   82 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~~-----------------~~~   82 (200)
                      ...+|+|+|.+|||||||+++|...............+..            ........                 ...
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD  108 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence            4568999999999999999999875221110000000000            00011111                 112


Q ss_pred             EEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHH
Q 028986           83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDG  162 (200)
Q Consensus        83 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~  162 (200)
                      ..+.+|||+|......   .+....+.+++|+|+......  ...+...      .+.|+++|+||+|+........++.
T Consensus       109 ~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~~--~~~~~~~------~~~~~iiv~NK~Dl~~~~~~~~~~~  177 (221)
T 2wsm_A          109 CDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDDV--VEKHPEI------FRVADLIVINKVALAEAVGADVEKM  177 (221)
T ss_dssp             CSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTTH--HHHCHHH------HHTCSEEEEECGGGHHHHTCCHHHH
T ss_pred             CCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcchh--hhhhhhh------hhcCCEEEEecccCCcchhhHHHHH
Confidence            4688999998511111   111246889999998765321  1111111      1467899999999854322345566


Q ss_pred             HHHHHHc--CCeEEEecCCCCCCHHHHHHHHHHhhccc
Q 028986          163 IEYAEKN--GMFFIETSAKTADNINQLFEVLITCTSSY  198 (200)
Q Consensus       163 ~~~~~~~--~~~~~~~S~~~~~~i~~~~~~i~~~~~~~  198 (200)
                      .+.+...  +++++++|+++|.|+++++++|.+.+.++
T Consensus       178 ~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~  215 (221)
T 2wsm_A          178 KADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVH  215 (221)
T ss_dssp             HHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred             HHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence            6666554  47899999999999999999999887654

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.67  E-value=8.1e-18  Score=130.15  Aligned_cols=160  Identities=14%  Similarity=0.134  Sum_probs=94.2

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccc--eeE--------------------------------------
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVG--ASF--------------------------------------   70 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~--~~~--------------------------------------   70 (200)
                      ...++|+|+|.++||||||+|+|++..+.+.......  ...                                      
T Consensus        29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i  108 (353)
T 2x2e_A           29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  108 (353)
T ss_dssp             CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence            4457899999999999999999999876432211000  000                                      


Q ss_pred             ---------EEEEEEecCCcEEEEEEEeCCChh-------------hhhhcccccccCcc-EEEEEEeCCCHHhHHHHHH
Q 028986           71 ---------LSQTIALQDSTTVKFEIWDTAGQE-------------RYAALAPLYYRGAA-VAVVVYDITSPDSFNKAQY  127 (200)
Q Consensus        71 ---------~~~~~~~~~~~~~~~~l~D~~g~~-------------~~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~  127 (200)
                               ....+.+.......+.+|||||..             .+......|+..++ ++++++|++....-..   
T Consensus       109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~---  185 (353)
T 2x2e_A          109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSD---  185 (353)
T ss_dssp             HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCH---
T ss_pred             cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhH---
Confidence                     000011111112469999999952             34455556665554 5566677664322111   


Q ss_pred             HHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHH--HHHcC-CeEEEecCCCCCCHHHHHHHHHH
Q 028986          128 WVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEY--AEKNG-MFFIETSAKTADNINQLFEVLIT  193 (200)
Q Consensus       128 ~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~--~~~~~-~~~~~~S~~~~~~i~~~~~~i~~  193 (200)
                      ++..+......+.|+++|+||+|+........+.....  ....+ .+++++||+++.|++++++++.+
T Consensus       186 ~~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~  254 (353)
T 2x2e_A          186 ALKVAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  254 (353)
T ss_dssp             HHHHHHHHCTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHHhCcCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence            22233344455789999999999975433222211100  00112 25788999999999999998876

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.66  E-value=2.9e-15  Score=115.22  Aligned_cols=144  Identities=17%  Similarity=0.123  Sum_probs=87.3

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcCCCCCCCcc--ccceeEEEEEEEecCC--------------cEEEEEEEeCCChhhhh
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKV--TVGASFLSQTIALQDS--------------TTVKFEIWDTAGQERYA   97 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~--------------~~~~~~l~D~~g~~~~~   97 (200)
                      ++|+|+|.+|+|||||+|+|++........+  |.....  ..+.+.+.              .+..+++||+||..+..
T Consensus         3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~--g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a   80 (363)
T 1jal_A            3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNT--GVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA   80 (363)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCS--SEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceE--EEEecCCcccceeeeeecccceeeeEEEEEECCCCcccc
Confidence            6899999999999999999999653221111  222111  12223221              02479999999975432


Q ss_pred             ----hcccc---cccCccEEEEEEeCCCH----------HhHHHHHHHHHH-----------------------------
Q 028986           98 ----ALAPL---YYRGAAVAVVVYDITSP----------DSFNKAQYWVKE-----------------------------  131 (200)
Q Consensus        98 ----~~~~~---~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~-----------------------------  131 (200)
                          .+...   +++.+|++++|+|+++.          +.++.+..+...                             
T Consensus        81 ~~~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~~  160 (363)
T 1jal_A           81 SKGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKF  160 (363)
T ss_dssp             HHHGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred             cccchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhHHH
Confidence                23333   46889999999999851          122222111111                             


Q ss_pred             -----------HHH-------------------c-CCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCC
Q 028986          132 -----------LQK-------------------H-GSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAK  179 (200)
Q Consensus       132 -----------i~~-------------------~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~  179 (200)
                                 +..                   . ....+|+++++|+.|..-......+.+.+++...+++++++||+
T Consensus       161 ~~~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~  239 (363)
T 1jal_A          161 ELSVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAA  239 (363)
T ss_dssp             HHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHH
T ss_pred             HHHHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechH
Confidence                       110                   0 12348999999999964221233566677887789999999965

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.64  E-value=8.7e-17  Score=124.42  Aligned_cols=103  Identities=15%  Similarity=0.104  Sum_probs=68.1

Q ss_pred             EEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHH
Q 028986           83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDG  162 (200)
Q Consensus        83 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~  162 (200)
                      +.+.+|||||....   .......+|++++|+|....+....+..        .....|+++|+||+|+...... ....
T Consensus       172 ~~~iiiDTpGi~~~---~~~~~~~aD~vl~V~d~~~~~~~~~l~~--------~~~~~p~ivVlNK~Dl~~~~~~-~~~~  239 (355)
T 3p32_A          172 FDVILIETVGVGQS---EVAVANMVDTFVLLTLARTGDQLQGIKK--------GVLELADIVVVNKADGEHHKEA-RLAA  239 (355)
T ss_dssp             CCEEEEEECSCSSH---HHHHHTTCSEEEEEEESSTTCTTTTCCT--------TSGGGCSEEEEECCCGGGHHHH-HHHH
T ss_pred             CCEEEEeCCCCCcH---HHHHHHhCCEEEEEECCCCCccHHHHHH--------hHhhcCCEEEEECCCCcChhHH-HHHH
Confidence            57899999994321   1223478999999999876543322211        1124588999999998542211 1111


Q ss_pred             HHHHHH----------cCCeEEEecCCCCCCHHHHHHHHHHhhcc
Q 028986          163 IEYAEK----------NGMFFIETSAKTADNINQLFEVLITCTSS  197 (200)
Q Consensus       163 ~~~~~~----------~~~~~~~~S~~~~~~i~~~~~~i~~~~~~  197 (200)
                      .++...          ++.+++++||++|.|+++++++|.+.+.+
T Consensus       240 ~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~  284 (355)
T 3p32_A          240 RELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV  284 (355)
T ss_dssp             HHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            122211          25789999999999999999999887754

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.63  E-value=5.5e-15  Score=119.99  Aligned_cols=115  Identities=12%  Similarity=0.105  Sum_probs=78.7

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHcCCC------------------C----CCCccccceeEEEEEEEecCCcEEEEEEEe
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVRGQF------------------D----PTSKVTVGASFLSQTIALQDSTTVKFEIWD   89 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~~~~------------------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D   89 (200)
                      +.=||+|+|+.++|||||..+|+...-                  .    ......+........+.+.+   ++++|+|
T Consensus        30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~---~~iNlID  106 (548)
T 3vqt_A           30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD---RVVNLLD  106 (548)
T ss_dssp             TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT---EEEEEEC
T ss_pred             ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC---EEEEEEe
Confidence            445899999999999999999963110                  0    00001111111122223322   6899999


Q ss_pred             CCChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCC
Q 028986           90 TAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE  153 (200)
Q Consensus        90 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~  153 (200)
                      |||+.+|.......++-+|++|+|+|+...-......-| ....+   .++|.++++||+|...
T Consensus       107 TPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~-~~a~~---~~lp~i~fINK~Dr~~  166 (548)
T 3vqt_A          107 TPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLM-DVCRM---RATPVMTFVNKMDREA  166 (548)
T ss_dssp             CCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHH-HHHHH---TTCCEEEEEECTTSCC
T ss_pred             CCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHH-HHHHH---hCCceEEEEecccchh
Confidence            999999999999999999999999999987444443434 33333   3789999999999854

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.62  E-value=5.8e-16  Score=125.79  Aligned_cols=121  Identities=16%  Similarity=0.229  Sum_probs=79.6

Q ss_pred             CCceeeEEEEcCCCCcHHHHHHHHHcCCCC---CCCccccceeEEEEEE-------------------------------
Q 028986           30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFD---PTSKVTVGASFLSQTI-------------------------------   75 (200)
Q Consensus        30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~---~~~~~~~~~~~~~~~~-------------------------------   75 (200)
                      ....++|+|+|.+|+|||||+|+|++..+.   ....++. ........                               
T Consensus        62 ~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T-~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~  140 (550)
T 2qpt_A           62 FDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTT-DCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFL  140 (550)
T ss_dssp             TSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCC-CSEEEEECCSSSEEECCC------------------CCC
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCcc-ceEEEEEECCcccccCCceeeecCcccHHHHhhhccccc
Confidence            456789999999999999999999998763   1111111 11000000                               


Q ss_pred             ------EecCCcEEEEEEEeCCChhh-----------hhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCC
Q 028986           76 ------ALQDSTTVKFEIWDTAGQER-----------YAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSP  138 (200)
Q Consensus        76 ------~~~~~~~~~~~l~D~~g~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~  138 (200)
                            .........+.+|||||...           +...+..++..+|++|+|+|+++....+....|+..+.   ..
T Consensus       141 ~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~---~~  217 (550)
T 2qpt_A          141 NRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALR---GH  217 (550)
T ss_dssp             TTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTT---TC
T ss_pred             ccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHH---hc
Confidence                  00000002589999999753           34555667888999999999987544445555655554   33


Q ss_pred             CCeEEEEEeCCCCCCC
Q 028986          139 DIVMALVGNKADLHEK  154 (200)
Q Consensus       139 ~~p~iiv~nK~D~~~~  154 (200)
                      +.|+++|+||+|+...
T Consensus       218 ~~pvilVlNK~Dl~~~  233 (550)
T 2qpt_A          218 EDKIRVVLNKADMVET  233 (550)
T ss_dssp             GGGEEEEEECGGGSCH
T ss_pred             CCCEEEEEECCCccCH
Confidence            6789999999998654

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.59  E-value=1.2e-15  Score=129.36  Aligned_cols=118  Identities=18%  Similarity=0.201  Sum_probs=84.2

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCC------------CCC------CCccccceeEEEEEEEe-----------cCCc
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQ------------FDP------TSKVTVGASFLSQTIAL-----------QDST   81 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~------------~~~------~~~~~~~~~~~~~~~~~-----------~~~~   81 (200)
                      ++..||+|+|+.++|||||+++|+...            +..      ....+.........+..           .++.
T Consensus        17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~   96 (842)
T 1n0u_A           17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN   96 (842)
T ss_dssp             GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence            456799999999999999999998641            100      00111111111112221           1344


Q ss_pred             EEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCC
Q 028986           82 TVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLH  152 (200)
Q Consensus        82 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~  152 (200)
                      .+.+.+|||||+.++...+..+++.+|++|+|+|+.++.+++....|....    ..++|+++|+||+|+.
T Consensus        97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~----~~~~p~ilviNK~D~~  163 (842)
T 1n0u_A           97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL----GERIKPVVVINKVDRA  163 (842)
T ss_dssp             EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH----HTTCEEEEEEECHHHH
T ss_pred             CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH----HcCCCeEEEEECCCcc
Confidence            689999999999999989999999999999999999987776665554433    2368999999999985

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.59  E-value=3.1e-14  Score=110.10  Aligned_cols=158  Identities=11%  Similarity=0.093  Sum_probs=97.5

Q ss_pred             CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhh-------hhcccc
Q 028986           30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERY-------AALAPL  102 (200)
Q Consensus        30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-------~~~~~~  102 (200)
                      +....+|+|+|.|+||||||+|+|++........+..+.+.....+.+.+   .+++++|+||.-.-       ....-.
T Consensus        69 k~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~---~~i~l~D~pGl~~~a~~~~~~g~~~l~  145 (376)
T 4a9a_A           69 RTGVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG---AKIQMLDLPGIIDGAKDGRGRGKQVIA  145 (376)
T ss_dssp             BCSSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT---EEEEEEECGGGCCC-----CHHHHHHH
T ss_pred             ecCCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC---cEEEEEeCCCccCCchhhhHHHHHHHH
Confidence            34456899999999999999999999764433334444444444555544   57999999994211       111123


Q ss_pred             cccCccEEEEEEeCCCHHhH-HHHHHHHHHHHHcCCCCCeEEEEEeCCCCCC--------CCcCCHHHHHHHHHHcCCeE
Q 028986          103 YYRGAAVAVVVYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLHE--------KREVPAQDGIEYAEKNGMFF  173 (200)
Q Consensus       103 ~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~--------~~~~~~~~~~~~~~~~~~~~  173 (200)
                      .++.+|++++|+|++++... +.+...+..+.. .....|.++++||.|...        ......++...+...+.+..
T Consensus       146 ~i~~ad~il~vvD~~~p~~~~~~i~~EL~~~~~-~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt~  224 (376)
T 4a9a_A          146 VARTCNLLFIILDVNKPLHHKQIIEKELEGVGI-RLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINS  224 (376)
T ss_dssp             HHHHCSEEEEEEETTSHHHHHHHHHHHHHHTTE-EETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCCS
T ss_pred             HHHhcCccccccccCccHHHHHHHHHHHHHhhH-hhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcccC
Confidence            45779999999999987322 333333322211 123567788899999732        23345666666666665543


Q ss_pred             EEecCCCCCCHHHHHHHH
Q 028986          174 IETSAKTADNINQLFEVL  191 (200)
Q Consensus       174 ~~~S~~~~~~i~~~~~~i  191 (200)
                      -++-...+...+++.+.+
T Consensus       225 kpv~~~~nv~eddl~d~~  242 (376)
T 4a9a_A          225 AEIAFRCDATVDDLIDVL  242 (376)
T ss_dssp             EEEEECSCCCHHHHHHHH
T ss_pred             CCeeecccCCHHHHHHHH
Confidence            344444555666665543

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.59  E-value=9.2e-15  Score=112.71  Aligned_cols=102  Identities=12%  Similarity=0.088  Sum_probs=61.5

Q ss_pred             EEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHH
Q 028986           83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDG  162 (200)
Q Consensus        83 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~  162 (200)
                      +.+.++||+|....   .......+|++++|+|++.+.....+..   .+     ...|.++|+||+|+...... ....
T Consensus       167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i-----l~~~~ivVlNK~Dl~~~~~~-~~~~  234 (349)
T 2www_A          167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI-----IEMADLVAVTKSDGDLIVPA-RRIQ  234 (349)
T ss_dssp             CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHHH-HHHH
T ss_pred             CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH-----HhcCCEEEEeeecCCCchhH-HHHH
Confidence            46899999995311   1233568999999999987643222211   11     24578899999998532110 0111


Q ss_pred             HHHHH----------HcCCeEEEecCCCCCCHHHHHHHHHHhhc
Q 028986          163 IEYAE----------KNGMFFIETSAKTADNINQLFEVLITCTS  196 (200)
Q Consensus       163 ~~~~~----------~~~~~~~~~S~~~~~~i~~~~~~i~~~~~  196 (200)
                      ..+..          .+..+++.+|++++.|+++++++|.+.+.
T Consensus       235 ~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~  278 (349)
T 2www_A          235 AEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD  278 (349)
T ss_dssp             HHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence            12211          12457899999999999999999988764

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.57  E-value=1.1e-14  Score=112.67  Aligned_cols=83  Identities=22%  Similarity=0.181  Sum_probs=53.0

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcCCCCC-CCc-cccceeEEEEEEEecC------------------CcEEEEEEEeCCCh
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRGQFDP-TSK-VTVGASFLSQTIALQD------------------STTVKFEIWDTAGQ   93 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~~~~~-~~~-~~~~~~~~~~~~~~~~------------------~~~~~~~l~D~~g~   93 (200)
                      ++|+|+|.+|+|||||+|+|++..... .++ .|........  .+.+                  ..+..+++||+||.
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~--~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl   79 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVV--PLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL   79 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEE--ECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeE--ecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence            579999999999999999999864211 111 1222222211  2211                  12357999999997


Q ss_pred             hhhh----hc---ccccccCccEEEEEEeCCC
Q 028986           94 ERYA----AL---APLYYRGAAVAVVVYDITS  118 (200)
Q Consensus        94 ~~~~----~~---~~~~~~~~d~~i~v~d~~~  118 (200)
                      ....    .+   ....++.+|++++|+|+++
T Consensus        80 ~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~  111 (368)
T 2dby_A           80 VKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP  111 (368)
T ss_dssp             CCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred             cccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence            5432    11   1224688999999999985

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.56  E-value=2.7e-14  Score=105.88  Aligned_cols=110  Identities=15%  Similarity=0.065  Sum_probs=68.5

Q ss_pred             EEEEEEeCCChhhhhhccc------ccccCccEEEEEEeCCCH---HhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCC
Q 028986           83 VKFEIWDTAGQERYAALAP------LYYRGAAVAVVVYDITSP---DSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE  153 (200)
Q Consensus        83 ~~~~l~D~~g~~~~~~~~~------~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~  153 (200)
                      +.+.+|||||..+......      ..+.. +++++++|+...   ..+.....+..  ......+.|+++|+||+|+..
T Consensus       109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~--~~~~~~~~p~~iv~NK~D~~~  185 (262)
T 1yrb_A          109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFAL--LIDLRLGATTIPALNKVDLLS  185 (262)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHH--HHHHHHTSCEEEEECCGGGCC
T ss_pred             CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHH--HHhcccCCCeEEEEecccccc
Confidence            4799999999865433221      23456 899999987643   22222111111  111123678999999999865


Q ss_pred             CCcCCHHHHHH----------------------------HHHHcC--CeEEEecCCCCCCHHHHHHHHHHhhcc
Q 028986          154 KREVPAQDGIE----------------------------YAEKNG--MFFIETSAKTADNINQLFEVLITCTSS  197 (200)
Q Consensus       154 ~~~~~~~~~~~----------------------------~~~~~~--~~~~~~S~~~~~~i~~~~~~i~~~~~~  197 (200)
                      ..+.  ++..+                            ++..++  ++++++|++++.|+++++++|.+.+..
T Consensus       186 ~~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~  257 (262)
T 1yrb_A          186 EEEK--ERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCT  257 (262)
T ss_dssp             HHHH--HHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             cccH--HHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcc
Confidence            3221  11111                            123333  479999999999999999999987753

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.55  E-value=3.8e-15  Score=114.59  Aligned_cols=103  Identities=15%  Similarity=0.075  Sum_probs=63.9

Q ss_pred             EEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCH--H
Q 028986           83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPA--Q  160 (200)
Q Consensus        83 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~--~  160 (200)
                      +.+.+|||||.......   ....+|++++|+|++....+..+..   ..     .+.|.++|+||+|+........  +
T Consensus       149 ~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~---~~-----~~~p~ivv~NK~Dl~~~~~~~~~~~  217 (341)
T 2p67_A          149 YDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK---GL-----MEVADLIVINKDDGDNHTNVAIARH  217 (341)
T ss_dssp             CSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH---HH-----HHHCSEEEECCCCTTCHHHHHHHHH
T ss_pred             CCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH---hh-----hcccCEEEEECCCCCChHHHHHHHH
Confidence            57999999995433222   3578999999999976543211111   00     1356889999999864321110  1


Q ss_pred             HHHHHHHHc-------CCeEEEecCCCCCCHHHHHHHHHHhhc
Q 028986          161 DGIEYAEKN-------GMFFIETSAKTADNINQLFEVLITCTS  196 (200)
Q Consensus       161 ~~~~~~~~~-------~~~~~~~S~~~~~~i~~~~~~i~~~~~  196 (200)
                      +........       ..+++++|++++.|+++++++|.+.+.
T Consensus       218 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          218 MYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  260 (341)
T ss_dssp             HHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            122211221       457899999999999999999988764

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.54  E-value=5.6e-15  Score=122.93  Aligned_cols=156  Identities=17%  Similarity=0.174  Sum_probs=96.5

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccce------------------------------------------
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGA------------------------------------------   68 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~------------------------------------------   68 (200)
                      -...+|+|+|.+++|||||+|+|++..+.+......+.                                          
T Consensus        49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~  128 (772)
T 3zvr_A           49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  128 (772)
T ss_dssp             GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence            44569999999999999999999997763322111100                                          


Q ss_pred             ---------eEEEEEEEecCCcEEEEEEEeCCChhh-------------hhhcccccc-cCccEEEEEEeCCCHHhHHHH
Q 028986           69 ---------SFLSQTIALQDSTTVKFEIWDTAGQER-------------YAALAPLYY-RGAAVAVVVYDITSPDSFNKA  125 (200)
Q Consensus        69 ---------~~~~~~~~~~~~~~~~~~l~D~~g~~~-------------~~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~  125 (200)
                               ......+..++.  ..+.++||||...             .......++ ..+|++++|+|++........
T Consensus       129 ~g~~~~is~~~i~l~I~~P~~--~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~  206 (772)
T 3zvr_A          129 TGTNKGISPVPINLRVYSPHV--LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA  206 (772)
T ss_dssp             HCSTTCCCSCCEEEEEEETTC--CSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHH
T ss_pred             cCCCCcccccceEEEEecCCC--CceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHH
Confidence                     000111111121  2578999999322             223333344 578999999999875322222


Q ss_pred             HHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHH----cC-CeEEEecCCCCCCHHHHHHHHHH
Q 028986          126 QYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEK----NG-MFFIETSAKTADNINQLFEVLIT  193 (200)
Q Consensus       126 ~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~----~~-~~~~~~S~~~~~~i~~~~~~i~~  193 (200)
                      ..++..+   ...+.|+++|+||+|+.......... .. ...    .+ .+++.+||+++.|++++++.|.+
T Consensus       207 l~ll~~L---~~~g~pvIlVlNKiDlv~~~~~~~~i-l~-~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~  274 (772)
T 3zvr_A          207 LKIAKEV---DPQGQRTIGVITKLDLMDEGTDARDV-LE-NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  274 (772)
T ss_dssp             HHHHHHH---CTTCSSEEEEEECTTSSCTTCCSHHH-HT-TCSSCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred             HHHHHHH---HhcCCCEEEEEeCcccCCcchhhHHH-HH-HHhhhhhccCCceEEecccccccchhHHHHHHH
Confidence            2233333   34478999999999997654432221 11 001    12 25788999999999999998876

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.48  E-value=8e-14  Score=106.95  Aligned_cols=103  Identities=13%  Similarity=0.074  Sum_probs=62.6

Q ss_pred             EEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHH
Q 028986           83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDG  162 (200)
Q Consensus        83 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~  162 (200)
                      ..+.++||+|.....   ......+|.+++++|+...+..+.+...   +.     ..+.++++||+|+...........
T Consensus       148 ~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~---i~-----~~~~ivvlNK~Dl~~~~~~s~~~~  216 (337)
T 2qm8_A          148 FDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKG---IF-----ELADMIAVNKADDGDGERRASAAA  216 (337)
T ss_dssp             CCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTT---HH-----HHCSEEEEECCSTTCCHHHHHHHH
T ss_pred             CCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHH---Hh-----ccccEEEEEchhccCchhHHHHHH
Confidence            579999999963211   1234679999999998755322211111   11     234567779999754322222222


Q ss_pred             HHHHHH----------cCCeEEEecCCCCCCHHHHHHHHHHhhc
Q 028986          163 IEYAEK----------NGMFFIETSAKTADNINQLFEVLITCTS  196 (200)
Q Consensus       163 ~~~~~~----------~~~~~~~~S~~~~~~i~~~~~~i~~~~~  196 (200)
                      .++...          +..+++.+|++++.|++++++.|.+.+.
T Consensus       217 ~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          217 SEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             HHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            333221          1457899999999999999999988654

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.47  E-value=1.6e-14  Score=119.37  Aligned_cols=114  Identities=16%  Similarity=0.152  Sum_probs=75.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC--CCCC------C---Cc-----cccceeEEEEEEEecCCcEEEEEEEeCCChhhhhh
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG--QFDP------T---SK-----VTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAA   98 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~--~~~~------~---~~-----~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~   98 (200)
                      ||+|+|+.++|||||..+|+..  ....      .   ..     ..-+.+.....+.+.... .+++++||||+.+|..
T Consensus         4 Ni~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~-~~iNlIDTPGH~DF~~   82 (638)
T 3j25_A            4 NIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWEN-TKVNIIDTPGHMDFLA   82 (638)
T ss_dssp             CCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSS-CBCCCEECCCSSSTHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECC-EEEEEEECCCcHHHHH
Confidence            7999999999999999999741  1100      0   00     000111111111121222 5799999999999999


Q ss_pred             cccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCC
Q 028986           99 LAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE  153 (200)
Q Consensus        99 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~  153 (200)
                      .....++-+|++|+|+|+...-..+...-| ....+.   ++|.++++||+|...
T Consensus        83 Ev~raL~~~DgavlVVDa~~GV~~qT~~v~-~~a~~~---~lp~i~~INKmDr~~  133 (638)
T 3j25_A           83 EVYRSLSVLDGAILLISAKDGVQAQTRILF-HALRKM---GIPTIFFINKIDQNG  133 (638)
T ss_dssp             HHHHHHTTCSEEECCEESSCTTCSHHHHHH-HHHHHH---TCSCEECCEECCSSS
T ss_pred             HHHHHHHHhCEEEEEEeCCCCCcHHHHHHH-HHHHHc---CCCeEEEEecccccc
Confidence            999999999999999999976433332333 333333   678899999999753

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.46  E-value=1.8e-12  Score=108.49  Aligned_cols=118  Identities=17%  Similarity=0.122  Sum_probs=78.2

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcC--------CCCC----------CCccccceeEEEEEEEecC----CcEEEEEEE
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRG--------QFDP----------TSKVTVGASFLSQTIALQD----STTVKFEIW   88 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~--------~~~~----------~~~~~~~~~~~~~~~~~~~----~~~~~~~l~   88 (200)
                      ++.=||+|+|+.++|||||..+|+..        ....          .....+........+.+..    ...+.++|+
T Consensus        11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI   90 (709)
T 4fn5_A           11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI   90 (709)
T ss_dssp             GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred             HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence            44458999999999999999999731        1100          0001111111122222221    234789999


Q ss_pred             eCCChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCC
Q 028986           89 DTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLH  152 (200)
Q Consensus        89 D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~  152 (200)
                      ||||+-+|.......++-+|++|+|+|+...-......-|... .+.   ++|.++++||+|..
T Consensus        91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a-~~~---~lp~i~~iNKiDr~  150 (709)
T 4fn5_A           91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQA-NKY---GVPRIVYVNKMDRQ  150 (709)
T ss_dssp             CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHH-HHH---TCCEEEEEECSSST
T ss_pred             eCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHH-HHc---CCCeEEEEcccccc
Confidence            9999999999999999999999999999976444433333333 323   78899999999974

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.46  E-value=1.7e-13  Score=103.71  Aligned_cols=98  Identities=20%  Similarity=0.186  Sum_probs=79.4

Q ss_pred             hhhhhhcccccccCccEEEEEEeCCCHH-hHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCC-HHHHHHHHHHcC
Q 028986           93 QERYAALAPLYYRGAAVAVVVYDITSPD-SFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVP-AQDGIEYAEKNG  170 (200)
Q Consensus        93 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~-~~~~~~~~~~~~  170 (200)
                      ++++..+...+++++|++++|+|++++. ++..+..|+..+..   .++|+++|+||+|+....++. .++..+++...+
T Consensus        66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g  142 (302)
T 2yv5_A           66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAG  142 (302)
T ss_dssp             CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTT
T ss_pred             CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCC
Confidence            5666777788999999999999999886 88888899887765   478999999999986543212 344556667778


Q ss_pred             CeEEEecCCCCCCHHHHHHHHHH
Q 028986          171 MFFIETSAKTADNINQLFEVLIT  193 (200)
Q Consensus       171 ~~~~~~S~~~~~~i~~~~~~i~~  193 (200)
                      .+++++||+++.|++++++.+..
T Consensus       143 ~~~~~~SA~~g~gi~~L~~~l~G  165 (302)
T 2yv5_A          143 YDVLKVSAKTGEGIDELVDYLEG  165 (302)
T ss_dssp             CEEEECCTTTCTTHHHHHHHTTT
T ss_pred             CeEEEEECCCCCCHHHHHhhccC
Confidence            99999999999999999987654

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=99.37  E-value=4.3e-13  Score=94.59  Aligned_cols=106  Identities=8%  Similarity=-0.087  Sum_probs=71.2

Q ss_pred             CChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHH----HHHcC-CCCCeEEEEEeCC-CCCCCCcCCHHHHHH
Q 028986           91 AGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKE----LQKHG-SPDIVMALVGNKA-DLHEKREVPAQDGIE  164 (200)
Q Consensus        91 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~----i~~~~-~~~~p~iiv~nK~-D~~~~~~~~~~~~~~  164 (200)
                      +|+...+.+|.+|+.++|++|||+|.++.+-++ .+..+..    +.... ..++|++|++||. |+..  ..+..++.+
T Consensus       110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~--Ams~~EI~e  186 (227)
T 3l82_B          110 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLAH  186 (227)
T ss_dssp             -------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSC--BCCHHHHHH
T ss_pred             CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccC--CCCHHHHHH
Confidence            378889999999999999999999999875443 3333322    22221 2678999999995 6643  344555444


Q ss_pred             HHHH----cCCeEEEecCCCCCCHHHHHHHHHHhhcccC
Q 028986          165 YAEK----NGMFFIETSAKTADNINQLFEVLITCTSSYC  199 (200)
Q Consensus       165 ~~~~----~~~~~~~~S~~~~~~i~~~~~~i~~~~~~~~  199 (200)
                      ....    ..+.+..|||.+|+|+.+.++||.+.+.+.+
T Consensus       187 ~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k~  225 (227)
T 3l82_B          187 ELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESKR  225 (227)
T ss_dssp             HTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTTC-
T ss_pred             HcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHhhc
Confidence            3321    3556899999999999999999999887654

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.30  E-value=3.5e-11  Score=93.65  Aligned_cols=87  Identities=16%  Similarity=0.161  Sum_probs=54.4

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHcCCC-CCCCccccceeEEEEEEEecCC------------c--EEEEEEEeCCChhhh
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVRGQF-DPTSKVTVGASFLSQTIALQDS------------T--TVKFEIWDTAGQERY   96 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~------------~--~~~~~l~D~~g~~~~   96 (200)
                      ...+|+|+|++|+|||||+|+|++... .....+..........+.+.+.            .  +..+.+||+||....
T Consensus        19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~   98 (392)
T 1ni3_A           19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG   98 (392)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence            356899999999999999999999654 2222222222222222333221            1  136899999995321


Q ss_pred             -------hhcccccccCccEEEEEEeCCC
Q 028986           97 -------AALAPLYYRGAAVAVVVYDITS  118 (200)
Q Consensus        97 -------~~~~~~~~~~~d~~i~v~d~~~  118 (200)
                             .......++.+|++++|+|+.+
T Consensus        99 ~s~~e~L~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A           99 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence                   1122334578999999999863

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.29  E-value=1.9e-12  Score=100.53  Aligned_cols=89  Identities=13%  Similarity=0.045  Sum_probs=49.9

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCc--------------EEEEEEEeCCChhhh
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDST--------------TVKFEIWDTAGQERY   96 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~l~D~~g~~~~   96 (200)
                      ...++|+|+|.+|+|||||+|+|++........+..+.......+.+.+..              +..+++||+||....
T Consensus        20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~   99 (396)
T 2ohf_A           20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG   99 (396)
T ss_dssp             SSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence            345789999999999999999999875432222222222222333332210              236999999997653


Q ss_pred             hh-------cccccccCccEEEEEEeCCCH
Q 028986           97 AA-------LAPLYYRGAAVAVVVYDITSP  119 (200)
Q Consensus        97 ~~-------~~~~~~~~~d~~i~v~d~~~~  119 (200)
                      ..       .+..+++++|++++|+|+++.
T Consensus       100 as~~~glg~~~l~~ir~aD~Il~VvD~~~~  129 (396)
T 2ohf_A          100 AHNGQGLGNAFLSHISACDGIFHLTRAFED  129 (396)
T ss_dssp             -------CCHHHHHHHTSSSEEEEEEC---
T ss_pred             cchhhHHHHHHHHHHHhcCeEEEEEecCCC
Confidence            32       334567899999999998854

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=99.22  E-value=1.3e-11  Score=91.14  Aligned_cols=108  Identities=7%  Similarity=-0.084  Sum_probs=74.7

Q ss_pred             CCChhhhhhcccccccCccEEEEEEeCCCHHhHH---HHHHHHHHHHHcC-CCCCeEEEEEeC-CCCCCCCcCCHHHHHH
Q 028986           90 TAGQERYAALAPLYYRGAAVAVVVYDITSPDSFN---KAQYWVKELQKHG-SPDIVMALVGNK-ADLHEKREVPAQDGIE  164 (200)
Q Consensus        90 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~---~~~~~~~~i~~~~-~~~~p~iiv~nK-~D~~~~~~~~~~~~~~  164 (200)
                      .+|+...+.+|.+|+.++|++|||+|.++++-++   .+..+...+.+.. ..++|++|++|| .|+..  ..+..++.+
T Consensus       194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~--Ams~~EI~e  271 (312)
T 3l2o_B          194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLAH  271 (312)
T ss_dssp             ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSC--BCCHHHHHH
T ss_pred             CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccC--CCCHHHHHH
Confidence            3467788999999999999999999999875443   2222222332221 358899999996 57743  344445444


Q ss_pred             HHHH----cCCeEEEecCCCCCCHHHHHHHHHHhhcccC
Q 028986          165 YAEK----NGMFFIETSAKTADNINQLFEVLITCTSSYC  199 (200)
Q Consensus       165 ~~~~----~~~~~~~~S~~~~~~i~~~~~~i~~~~~~~~  199 (200)
                      ....    ..+.+..|||.+|+|+.+.++||.+.+.+.+
T Consensus       272 ~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k~  310 (312)
T 3l2o_B          272 ELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESKR  310 (312)
T ss_dssp             HTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC--
T ss_pred             HcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHhhc
Confidence            3221    3456899999999999999999999987654

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.03  E-value=1.9e-11  Score=94.84  Aligned_cols=139  Identities=16%  Similarity=0.129  Sum_probs=78.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcC-----CCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhh---h-c----c
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRG-----QFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYA---A-L----A  100 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~---~-~----~  100 (200)
                      .+|+++|.+|+|||||+|+|++.     ... ......+.+.......+..    .+.++||||.....   . .    .
T Consensus       163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~-~~~~~~gtT~~~~~~~~~~----~~~liDtPG~~~~~~~~~~l~~~~l  237 (369)
T 3ec1_A          163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVI-TTSYFPGTTLDMIEIPLES----GATLYDTPGIINHHQMAHFVDARDL  237 (369)
T ss_dssp             SCEEEECCTTSSHHHHHHHHHHHHHHTTCCC-EEEECTTSSCEEEEEECST----TCEEEECCSCCCCSSGGGGSCTTTH
T ss_pred             CcEEEEcCCCCchHHHHHHHHhhccCCccce-eecCCCCeEEeeEEEEeCC----CeEEEeCCCcCcHHHHHHHHhHHHH
Confidence            47999999999999999999985     111 1111222333333333333    27899999943211   1 1    1


Q ss_pred             ccc--ccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecC
Q 028986          101 PLY--YRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSA  178 (200)
Q Consensus       101 ~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~  178 (200)
                      ..+  .+..|+++++++..+...+..+..    +......+.|+++++||.|..+.... ......+.+..+..+.+.++
T Consensus       238 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----l~~l~~~~~~~~~v~~k~d~~~~~~~-~~~~~~~~~~~g~~l~p~~~  312 (369)
T 3ec1_A          238 KIITPKREIHPRVYQLNEGQTLFFGGLAR----LDYIKGGRRSFVCYMANELTVHRTKL-EKADSLYANQLGELLSPPSK  312 (369)
T ss_dssp             HHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEEEEG-GGHHHHHHHHBTTTBCSSCG
T ss_pred             HHHhcccccCceEEEEcCCceEEECCEEE----EEEccCCCceEEEEecCCcccccccH-HHHHHHHHHhcCCccCCCCc
Confidence            111  156899999999853211111110    11122457899999999998654432 22334444556666555555


Q ss_pred             CCCC
Q 028986          179 KTAD  182 (200)
Q Consensus       179 ~~~~  182 (200)
                      ....
T Consensus       313 ~~~~  316 (369)
T 3ec1_A          313 RYAA  316 (369)
T ss_dssp             GGTT
T ss_pred             hhhh
Confidence            4433

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.02  E-value=9.9e-10  Score=86.14  Aligned_cols=144  Identities=18%  Similarity=0.231  Sum_probs=70.7

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCcc--ccceeEEEEEEEecC-CcEEEEEEEeCCChhh------------
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKV--TVGASFLSQTIALQD-STTVKFEIWDTAGQER------------   95 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~------------   95 (200)
                      ...++++|+|++|+|||||+|.|.+..+......  ..+.......+.... +....++++|++|...            
T Consensus        40 Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~  119 (427)
T 2qag_B           40 GFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIV  119 (427)
T ss_dssp             CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHH
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHH
Confidence            3446799999999999999999998753221110  111111112222222 2224789999987321            


Q ss_pred             ------hhhcccc---------cccCc--cE-EEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcC
Q 028986           96 ------YAALAPL---------YYRGA--AV-AVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREV  157 (200)
Q Consensus        96 ------~~~~~~~---------~~~~~--d~-~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~  157 (200)
                            +......         ....+  |+ ++++.|...+-+... .   ..+... ..++|+|+|+||+|.....+.
T Consensus       120 ~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D-i---eilk~L-~~~~~vI~Vi~KtD~Lt~~E~  194 (427)
T 2qag_B          120 EFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD-L---VTMKKL-DSKVNIIPIIAKADAISKSEL  194 (427)
T ss_dssp             HHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH-H---HHHHHT-CSCSEEEEEESCGGGSCHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH-H---HHHHHH-hhCCCEEEEEcchhccchHHH
Confidence                  1111111         11222  33 555666654422222 1   222333 357899999999997654331


Q ss_pred             C--HHHHHHHHHHcCCeEEEecCC
Q 028986          158 P--AQDGIEYAEKNGMFFIETSAK  179 (200)
Q Consensus       158 ~--~~~~~~~~~~~~~~~~~~S~~  179 (200)
                      .  ...+.+.....+++++.+|..
T Consensus       195 ~~l~~~I~~~L~~~gi~I~~is~~  218 (427)
T 2qag_B          195 TKFKIKITSELVSNGVQIYQFPTD  218 (427)
T ss_dssp             HHHHHHHHHHHBTTBCCCCCCC--
T ss_pred             HHHHHHHHHHHHHcCCcEEecCCC
Confidence            1  111111122347777777753

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=99.00  E-value=1.4e-10  Score=93.01  Aligned_cols=153  Identities=14%  Similarity=0.100  Sum_probs=83.4

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHH------cCCC-----CCCCccc----------cceeEEEEEEE----------e--
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFV------RGQF-----DPTSKVT----------VGASFLSQTIA----------L--   77 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~------~~~~-----~~~~~~~----------~~~~~~~~~~~----------~--   77 (200)
                      .....|+|+|.+||||||+++.|.      +...     +......          .+.........          +  
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~  178 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK  178 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence            345689999999999999999998      3221     0000000          00111110000          0  


Q ss_pred             cCCcEEEEEEEeCCChhhh----hhccccc--ccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeE-EEEEeCCC
Q 028986           78 QDSTTVKFEIWDTAGQERY----AALAPLY--YRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVM-ALVGNKAD  150 (200)
Q Consensus        78 ~~~~~~~~~l~D~~g~~~~----~~~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~-iiv~nK~D  150 (200)
                      .....+.+.|+||||....    .......  ...+|.+++|+|+........   ....+..    .+|+ ++|+||+|
T Consensus       179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~---~a~~~~~----~~~i~gvVlNK~D  251 (504)
T 2j37_W          179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEA---QAKAFKD----KVDVASVIVTKLD  251 (504)
T ss_dssp             HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHH---HHHHHHH----HHCCCCEEEECTT
T ss_pred             HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHH---HHHHHHh----hcCceEEEEeCCc
Confidence            0002257999999995421    1111111  126899999999987532211   1122222    1454 78899999


Q ss_pred             CCCCCcCCHHHHHHHHHHcCCeE------------------EEecCCCCCC-HHHHHHHHHHh
Q 028986          151 LHEKREVPAQDGIEYAEKNGMFF------------------IETSAKTADN-INQLFEVLITC  194 (200)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~------------------~~~S~~~~~~-i~~~~~~i~~~  194 (200)
                      ......    .+.......+.|+                  +.+|+..|.+ +.++++++.+.
T Consensus       252 ~~~~~g----~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~  310 (504)
T 2j37_W          252 GHAKGG----GALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL  310 (504)
T ss_dssp             SCCCCT----HHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred             cccchH----HHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence            763321    1222333445543                  3368888988 99999888765

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.99  E-value=9.1e-10  Score=85.39  Aligned_cols=97  Identities=23%  Similarity=0.250  Sum_probs=72.9

Q ss_pred             ChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHH----HHHH
Q 028986           92 GQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGI----EYAE  167 (200)
Q Consensus        92 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~----~~~~  167 (200)
                      ..+.+...+..+.+.+|++++|+|++++.     ..|...+.+. ..+.|+++|+||+|+.... ...+...    .++.
T Consensus        55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~-~~~~p~ilV~NK~DL~~~~-~~~~~~~~~l~~~~~  127 (368)
T 3h2y_A           55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRF-VGNNKVLLVGNKADLIPKS-VKHDKVKHWMRYSAK  127 (368)
T ss_dssp             -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHH-SSSSCEEEEEECGGGSCTT-SCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHH-hCCCcEEEEEEChhcCCcc-cCHHHHHHHHHHHHH
Confidence            45678888899999999999999999863     3455555554 2378999999999996543 2233333    3456


Q ss_pred             HcCC---eEEEecCCCCCCHHHHHHHHHHhh
Q 028986          168 KNGM---FFIETSAKTADNINQLFEVLITCT  195 (200)
Q Consensus       168 ~~~~---~~~~~S~~~~~~i~~~~~~i~~~~  195 (200)
                      ..+.   .++.+||+++.|++++++.|.+..
T Consensus       128 ~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~  158 (368)
T 3h2y_A          128 QLGLKPEDVFLISAAKGQGIAELADAIEYYR  158 (368)
T ss_dssp             HTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence            6677   799999999999999999997654

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.98  E-value=2.6e-09  Score=79.42  Aligned_cols=138  Identities=19%  Similarity=0.199  Sum_probs=70.1

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHcCCCCCCCcc-------ccceeEEEEEEEecC-CcEEEEEEEeCCChhh---------
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKV-------TVGASFLSQTIALQD-STTVKFEIWDTAGQER---------   95 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~-------~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~---------   95 (200)
                      .++++|+|++|+|||||+|.|++...+.....       ..............+ +....++++|++|...         
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~   81 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE   81 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence            57899999999999999999998432211100       000000011111111 1113689999998211         


Q ss_pred             ---------hhh----------cccccccCccEEEEEEeCC-CHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCC
Q 028986           96 ---------YAA----------LAPLYYRGAAVAVVVYDIT-SPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKR  155 (200)
Q Consensus        96 ---------~~~----------~~~~~~~~~d~~i~v~d~~-~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~  155 (200)
                               +..          .....+..+++.++++|.. .+-.-.. ...+..+.   .. .++++|++|+|.....
T Consensus        82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L~---~~-~~vI~Vi~K~D~lt~~  156 (270)
T 3sop_A           82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHLS---KV-VNIIPVIAKADTMTLE  156 (270)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHHH---TT-SEEEEEETTGGGSCHH
T ss_pred             HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHHH---hc-CcEEEEEeccccCCHH
Confidence                     000          0011234468889999965 2211111 22333333   22 7899999999976532


Q ss_pred             cCC--HHHHHHHHHHcCCeEEE
Q 028986          156 EVP--AQDGIEYAEKNGMFFIE  175 (200)
Q Consensus       156 ~~~--~~~~~~~~~~~~~~~~~  175 (200)
                      +..  ...+.+....+++.+++
T Consensus       157 e~~~~k~~i~~~l~~~~i~i~~  178 (270)
T 3sop_A          157 EKSEFKQRVRKELEVNGIEFYP  178 (270)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCSS
T ss_pred             HHHHHHHHHHHHHHHcCccccC
Confidence            211  12222334445666554

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.96  E-value=1.5e-08  Score=79.50  Aligned_cols=156  Identities=13%  Similarity=0.162  Sum_probs=83.0

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccc-eeEEEEEEEecCCcEEEEEEEeCCChhhhh----hcc-cccccCc
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVG-ASFLSQTIALQDSTTVKFEIWDTAGQERYA----ALA-PLYYRGA  107 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~----~~~-~~~~~~~  107 (200)
                      ..++|+|++|+|||||+|.|.+...+.......+ .........+.....-.+.++|++|.....    ... ..-+...
T Consensus        70 ~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~  149 (413)
T 1tq4_A           70 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEY  149 (413)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGGC
T ss_pred             eEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCcc
Confidence            3799999999999999999998532221111111 000000011111111257899999853211    111 1113334


Q ss_pred             cEEEEEEeCC--CHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCC-------CCCcCCHHH----HHHHH----HHcC
Q 028986          108 AVAVVVYDIT--SPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLH-------EKREVPAQD----GIEYA----EKNG  170 (200)
Q Consensus       108 d~~i~v~d~~--~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~-------~~~~~~~~~----~~~~~----~~~~  170 (200)
                      +..++ ++..  ...-..    +...+..   .+.|+++|.||.|+.       .-.....++    +.+++    .+.+
T Consensus       150 ~~~~~-lS~G~~~kqrv~----la~aL~~---~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g  221 (413)
T 1tq4_A          150 DFFII-ISATRFKKNDID----IAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENG  221 (413)
T ss_dssp             SEEEE-EESSCCCHHHHH----HHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCeEE-eCCCCccHHHHH----HHHHHHh---cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence            55554 7776  332111    2222322   257899999999873       111112222    23332    1222


Q ss_pred             ---CeEEEecC--CCCCCHHHHHHHHHHhhcc
Q 028986          171 ---MFFIETSA--KTADNINQLFEVLITCTSS  197 (200)
Q Consensus       171 ---~~~~~~S~--~~~~~i~~~~~~i~~~~~~  197 (200)
                         ..++.+|+  ..+.+++++.+.|.+.+.+
T Consensus       222 ~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpe  253 (413)
T 1tq4_A          222 IAEPPIFLLSNKNVCHYDFPVLMDKLISDLPI  253 (413)
T ss_dssp             CSSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred             CCCCcEEEEecCcCCccCHHHHHHHHHHhCcc
Confidence               35788999  5566799999999887765

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.93  E-value=2.2e-11  Score=94.46  Aligned_cols=134  Identities=14%  Similarity=0.131  Sum_probs=72.9

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcCCCCC-----CCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhc--------c
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRGQFDP-----TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAAL--------A  100 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--------~  100 (200)
                      .+|+++|.+|+|||||+|+|++.....     ......+.+.....+.+.++    +.++||||.......        .
T Consensus       161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~----~~liDtPG~~~~~~~~~~l~~~~l  236 (368)
T 3h2y_A          161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE----SSLYDTPGIINHHQMAHYVGKQSL  236 (368)
T ss_dssp             SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS----CEEEECCCBCCTTSGGGGSCHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC----eEEEeCCCcCcHHHHHHHhhHHHH
Confidence            579999999999999999999853111     11122223332333333332    789999994221110        0


Q ss_pred             cc--cccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHH-HHHHHcCCeEEEec
Q 028986          101 PL--YYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGI-EYAEKNGMFFIETS  177 (200)
Q Consensus       101 ~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~-~~~~~~~~~~~~~S  177 (200)
                      ..  .....+.++++++.........+..    +......+.|+++++||.|..+...  .+... .+.+..+..+.+.+
T Consensus       237 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----~d~l~~~~~~~~~v~nk~d~~~~~~--~~~~~~~~~~~~g~~l~p~~  310 (368)
T 3h2y_A          237 KLITPTKEIKPMVFQLNEEQTLFFSGLAR----FDYVSGGRRAFTCHFSNRLTIHRTK--LEKADELYKNHAGDLLSPPT  310 (368)
T ss_dssp             HHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEEEE--HHHHHHHHHHHBTTTBCSSC
T ss_pred             HHhccccccCceEEEEcCCCEEEEcceEE----EEEecCCCceEEEEecCcccccccc--HHHHHHHHHHHhCCccCCCc
Confidence            11  1356788999998743211111100    1112245789999999999865443  23333 33344555444433

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.82  E-value=2.3e-09  Score=83.15  Aligned_cols=98  Identities=21%  Similarity=0.263  Sum_probs=71.0

Q ss_pred             ChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHH----HHH
Q 028986           92 GQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIE----YAE  167 (200)
Q Consensus        92 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~----~~~  167 (200)
                      .++.+...+..++..++++++|+|++++.+     .|...+.+. ..+.|+++|+||+|+.... ...+...+    ++.
T Consensus        57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~-l~~~piilV~NK~DLl~~~-~~~~~~~~~l~~~~~  129 (369)
T 3ec1_A           57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRF-AADNPILLVGNKADLLPRS-VKYPKLLRWMRRMAE  129 (369)
T ss_dssp             --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHH-CTTSCEEEEEECGGGSCTT-CCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHH-hCCCCEEEEEEChhcCCCc-cCHHHHHHHHHHHHH
Confidence            367788888888899999999999998753     233333333 2378899999999997542 22333333    355


Q ss_pred             HcCC---eEEEecCCCCCCHHHHHHHHHHhhc
Q 028986          168 KNGM---FFIETSAKTADNINQLFEVLITCTS  196 (200)
Q Consensus       168 ~~~~---~~~~~S~~~~~~i~~~~~~i~~~~~  196 (200)
                      ..+.   .++.+||+++.|++++++.|.+...
T Consensus       130 ~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~~  161 (369)
T 3ec1_A          130 ELGLCPVDVCLVSAAKGIGMAKVMEAINRYRE  161 (369)
T ss_dssp             TTTCCCSEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred             HcCCCcccEEEEECCCCCCHHHHHHHHHhhcc
Confidence            5666   6899999999999999999977654

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.79  E-value=4.9e-09  Score=78.38  Aligned_cols=100  Identities=15%  Similarity=0.052  Sum_probs=68.6

Q ss_pred             EEeCCChh-hhhhcccccccCccEEEEEEeCCCHHhHH--HHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHH
Q 028986           87 IWDTAGQE-RYAALAPLYYRGAAVAVVVYDITSPDSFN--KAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGI  163 (200)
Q Consensus        87 l~D~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~  163 (200)
                      +-..||+. .........+.++|+++.|+|+.++.+..  .+..|+        .++|.++|+||+|+.....  .+...
T Consensus         3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~~~~--~~~~~   72 (282)
T 1puj_A            3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKADAAV--TQQWK   72 (282)
T ss_dssp             ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSCHHH--HHHHH
T ss_pred             CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccCCHHH--HHHHH
Confidence            34578875 34455566788899999999999886553  334332        4688999999999965211  22223


Q ss_pred             HHHHHcCCeEEEecCCCCCCHHHHHHHHHHhhc
Q 028986          164 EYAEKNGMFFIETSAKTADNINQLFEVLITCTS  196 (200)
Q Consensus       164 ~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~~~  196 (200)
                      ++.+..+.+++.+|++++.|+.++++.+.+.+.
T Consensus        73 ~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~  105 (282)
T 1puj_A           73 EHFENQGIRSLSINSVNGQGLNQIVPASKEILQ  105 (282)
T ss_dssp             HHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred             HHHHhcCCcEEEEECCCcccHHHHHHHHHHHHH
Confidence            444456788999999999999999998877664

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.58  E-value=5.5e-08  Score=72.68  Aligned_cols=58  Identities=22%  Similarity=0.389  Sum_probs=35.4

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCCh
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ   93 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~   93 (200)
                      ...++|+++|.+|+|||||+|+|.+........ ..+.+.....+... .   .+.++||||.
T Consensus       118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~-~~g~T~~~~~~~~~-~---~~~l~DtpG~  175 (282)
T 1puj_A          118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGD-RPGITTSQQWVKVG-K---ELELLDTPGI  175 (282)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEEET-T---TEEEEECCCC
T ss_pred             CCCceEEEEecCCCchHHHHHHHhcCceeecCC-CCCeeeeeEEEEeC-C---CEEEEECcCc
Confidence            456899999999999999999999876432222 22222222222221 1   4889999994

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.54  E-value=9.8e-08  Score=75.25  Aligned_cols=86  Identities=15%  Similarity=0.107  Sum_probs=50.4

Q ss_pred             EEEEEEeCCChhh-----hhhccc-ccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCc
Q 028986           83 VKFEIWDTAGQER-----YAALAP-LYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKRE  156 (200)
Q Consensus        83 ~~~~l~D~~g~~~-----~~~~~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~  156 (200)
                      +.+.++||+|...     ...+.. .....+|.+++|+|+.........   ...+.+.   -.+..+|+||.|....  
T Consensus       183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~---a~~f~~~---~~i~gVIlTKlD~~~~--  254 (443)
T 3dm5_A          183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQ---ALAFKEA---TPIGSIIVTKLDGSAK--  254 (443)
T ss_dssp             CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHH---HHHHHHS---CTTEEEEEECCSSCSS--
T ss_pred             CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHH---HHHHHhh---CCCeEEEEECCCCccc--
Confidence            5789999999321     111110 112347899999999875332221   1223322   1235688999997432  


Q ss_pred             CCHHHHHHHHHHcCCeEEEecC
Q 028986          157 VPAQDGIEYAEKNGMFFIETSA  178 (200)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~S~  178 (200)
                        ...+.......+.|+.+++.
T Consensus       255 --gG~~ls~~~~~g~PI~fig~  274 (443)
T 3dm5_A          255 --GGGALSAVAATGAPIKFIGT  274 (443)
T ss_dssp             --HHHHHHHHHTTCCCEEEEEC
T ss_pred             --ccHHHHHHHHHCCCEEEEEc
Confidence              23345555667888888876

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.51  E-value=4.6e-08  Score=72.31  Aligned_cols=56  Identities=21%  Similarity=0.268  Sum_probs=34.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChh
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE   94 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~   94 (200)
                      ++++++|.+|+|||||+|+|.+...... ..+.+.+.....+...    ..+.+|||||..
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~----~~~~l~DtpG~~  155 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASSV-GAQPGITKGIQWFSLE----NGVKILDTPGIL  155 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECT----TSCEEESSCEEC
T ss_pred             hheEEeCCCCCCHHHHHHHHhccccccc-CCCCCCccceEEEEeC----CCEEEEECCCcc
Confidence            6999999999999999999998765322 2222322222222221    257899999954

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=98.36  E-value=7.9e-07  Score=72.62  Aligned_cols=65  Identities=12%  Similarity=0.056  Sum_probs=39.6

Q ss_pred             CCceeeEEEEcCCCCcHHHHHHHHHcCCCC-CCCccccceeEEEEEE--EecCCcEEEEEEEeCCChh
Q 028986           30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFD-PTSKVTVGASFLSQTI--ALQDSTTVKFEIWDTAGQE   94 (200)
Q Consensus        30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~D~~g~~   94 (200)
                      ....++|+|+|.+|+|||||+|+|++.... .....+.+.+.....+  .........+.++||||..
T Consensus        35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~  102 (592)
T 1f5n_A           35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLG  102 (592)
T ss_dssp             CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBC
T ss_pred             cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcC
Confidence            356788999999999999999999987532 1111111111111111  1212222478999999954

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=98.32  E-value=3.2e-06  Score=66.81  Aligned_cols=84  Identities=15%  Similarity=0.097  Sum_probs=47.9

Q ss_pred             EEEEEEeCCChhh----h-hhcc-cccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCC-e-EEEEEeCCCCCCC
Q 028986           83 VKFEIWDTAGQER----Y-AALA-PLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDI-V-MALVGNKADLHEK  154 (200)
Q Consensus        83 ~~~~l~D~~g~~~----~-~~~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~-p-~iiv~nK~D~~~~  154 (200)
                      +.+.++||||...    . ..+. ...+..+|.+++|+|+.....   .......+.    ... | ..+|+||+|....
T Consensus       181 ~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~----~~~~~i~gvVlnK~D~~~~  253 (432)
T 2v3c_C          181 ADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAFK----EAVGEIGSIIVTKLDGSAK  253 (432)
T ss_dssp             CSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHHH----TTSCSCEEEEEECSSSCST
T ss_pred             CCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHHh----hcccCCeEEEEeCCCCccc
Confidence            5789999999432    1 1110 112236899999999876531   111122222    124 4 7889999997432


Q ss_pred             CcCCHHHHHHHHHHcCCeEEEec
Q 028986          155 REVPAQDGIEYAEKNGMFFIETS  177 (200)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~S  177 (200)
                          ...+.......+.++..++
T Consensus       254 ----~g~~l~~~~~~~~pi~~ig  272 (432)
T 2v3c_C          254 ----GGGALSAVAETKAPIKFIG  272 (432)
T ss_dssp             ----THHHHHHHHHSSCCEEEEC
T ss_pred             ----hHHHHHHHHHHCCCEEEee
Confidence                1223445666777766653

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.31  E-value=1.4e-06  Score=71.87  Aligned_cols=23  Identities=22%  Similarity=0.408  Sum_probs=21.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQ   57 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~   57 (200)
                      .|+|+|++|||||||++.+.+..
T Consensus        47 ~iaIvG~nGsGKSTLL~~I~Gl~   69 (608)
T 3szr_A           47 AIAVIGDQSSGKSSVLEALSGVA   69 (608)
T ss_dssp             CEECCCCTTSCHHHHHHHHHSCC
T ss_pred             eEEEECCCCChHHHHHHHHhCCC
Confidence            49999999999999999999864

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.30  E-value=1.6e-07  Score=69.44  Aligned_cols=93  Identities=18%  Similarity=0.139  Sum_probs=60.3

Q ss_pred             CCChhh-hhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHH
Q 028986           90 TAGQER-YAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEK  168 (200)
Q Consensus        90 ~~g~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~  168 (200)
                      .||+.. ........+.++|+++.|+|+.++.+.....  +. +    . ++|.++|+||+|+.....  .+...++.+.
T Consensus         4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~-l----l-~k~~iivlNK~DL~~~~~--~~~~~~~~~~   73 (262)
T 3cnl_A            4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG--VD-F----S-RKETIILLNKVDIADEKT--TKKWVEFFKK   73 (262)
T ss_dssp             -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT--SC-C----T-TSEEEEEEECGGGSCHHH--HHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH--HH-h----c-CCCcEEEEECccCCCHHH--HHHHHHHHHH
Confidence            356542 2234455678899999999999885543210  01 1    1 788999999999965321  2233444555


Q ss_pred             cCCeEEEecCCCCCCHHHHHHHHHH
Q 028986          169 NGMFFIETSAKTADNINQLFEVLIT  193 (200)
Q Consensus       169 ~~~~~~~~S~~~~~~i~~~~~~i~~  193 (200)
                      .+.++ .+|++++.|++++++.+.+
T Consensus        74 ~g~~v-~iSa~~~~gi~~L~~~l~~   97 (262)
T 3cnl_A           74 QGKRV-ITTHKGEPRKVLLKKLSFD   97 (262)
T ss_dssp             TTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred             cCCeE-EEECCCCcCHHHHHHHHHH
Confidence            67888 9999999999998877654

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.28  E-value=1.8e-07  Score=73.66  Aligned_cols=86  Identities=12%  Similarity=0.046  Sum_probs=50.8

Q ss_pred             EEEEEEeCCChhh------hhhcccc--cccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCC
Q 028986           83 VKFEIWDTAGQER------YAALAPL--YYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK  154 (200)
Q Consensus        83 ~~~~l~D~~g~~~------~~~~~~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~  154 (200)
                      +.+.++||||...      .......  .....|.+++|+|+.........   ...+.+.   -.+..+|+||.|... 
T Consensus       180 ~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~---a~~f~~~---~~~~gVIlTKlD~~a-  252 (433)
T 3kl4_A          180 MDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDL---ASRFHQA---SPIGSVIITKMDGTA-  252 (433)
T ss_dssp             CSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHH---HHHHHHH---CSSEEEEEECGGGCS-
T ss_pred             CCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHH---HHHHhcc---cCCcEEEEecccccc-
Confidence            5688999999532      1111111  11246899999999865332222   2223222   123678899999743 


Q ss_pred             CcCCHHHHHHHHHHcCCeEEEecC
Q 028986          155 REVPAQDGIEYAEKNGMFFIETSA  178 (200)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~S~  178 (200)
                         ..-.+.......+.|+.+++.
T Consensus       253 ---~~G~als~~~~~g~Pi~fig~  273 (433)
T 3kl4_A          253 ---KGGGALSAVVATGATIKFIGT  273 (433)
T ss_dssp             ---CHHHHHHHHHHHTCEEEEEEC
T ss_pred             ---cchHHHHHHHHHCCCEEEEEC
Confidence               233455666667999888886

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.28  E-value=1.9e-07  Score=70.36  Aligned_cols=91  Identities=21%  Similarity=0.178  Sum_probs=62.9

Q ss_pred             hhcccccccCccEEEEEEeCCCHH-hHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcC--CHHHHHHHHHHcCCeE
Q 028986           97 AALAPLYYRGAAVAVVVYDITSPD-SFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREV--PAQDGIEYAEKNGMFF  173 (200)
Q Consensus        97 ~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~  173 (200)
                      ..+....+.++|.+++|+|+..+. +...+..++....   ..++|.++|+||+|+....+.  ..+...+.....+.++
T Consensus        77 ~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~---~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v  153 (307)
T 1t9h_A           77 NELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVE---ANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDV  153 (307)
T ss_dssp             CEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHH---TTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCE
T ss_pred             hhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHH---HCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeE
Confidence            344455789999999999999764 3344454443333   347889999999999765320  1233445555668899


Q ss_pred             EEecCCCCCCHHHHHHH
Q 028986          174 IETSAKTADNINQLFEV  190 (200)
Q Consensus       174 ~~~S~~~~~~i~~~~~~  190 (200)
                      +.+|+.++.|++++++.
T Consensus       154 ~~~sa~~~~g~~~L~~~  170 (307)
T 1t9h_A          154 YLTSSKDQDSLADIIPH  170 (307)
T ss_dssp             EECCHHHHTTCTTTGGG
T ss_pred             EEEecCCCCCHHHHHhh
Confidence            99999999888776654

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=98.21  E-value=2.6e-06  Score=64.07  Aligned_cols=90  Identities=14%  Similarity=0.093  Sum_probs=53.1

Q ss_pred             EEEEEEeCCChhh--hh-hccc-----ccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCe-EEEEEeCCCCCC
Q 028986           83 VKFEIWDTAGQER--YA-ALAP-----LYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIV-MALVGNKADLHE  153 (200)
Q Consensus        83 ~~~~l~D~~g~~~--~~-~~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~iiv~nK~D~~~  153 (200)
                      +.+.++||||...  .. .+..     .....+|.+++|+|+......   ......+..    ..+ ..+|+||.|...
T Consensus       181 ~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~---~~~~~~~~~----~~~i~gvVlnk~D~~~  253 (297)
T 1j8m_F          181 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKA---YDLASKFNQ----ASKIGTIIITKMDGTA  253 (297)
T ss_dssp             CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGH---HHHHHHHHH----TCTTEEEEEECGGGCT
T ss_pred             CCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHHH---HHHHHHHHh----hCCCCEEEEeCCCCCc
Confidence            5789999999654  21 1111     123458999999998754211   111222222    244 678899999643


Q ss_pred             CCcCCHHHHHHHHHHcCCeEEEecCCCCCCHH
Q 028986          154 KREVPAQDGIEYAEKNGMFFIETSAKTADNIN  185 (200)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~  185 (200)
                          ....+.......+.++.+++.  |++++
T Consensus       254 ----~~g~~~~~~~~~~~pi~~i~~--Ge~v~  279 (297)
T 1j8m_F          254 ----KGGGALSAVAATGATIKFIGT--GEKID  279 (297)
T ss_dssp             ----THHHHHHHHHTTTCCEEEEEC--SSSTT
T ss_pred             ----chHHHHHHHHHHCcCEEEEeC--CCChh
Confidence                233445666777888887763  44443

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=98.05  E-value=1.2e-05  Score=61.75  Aligned_cols=87  Identities=21%  Similarity=0.235  Sum_probs=57.7

Q ss_pred             cccccCccEEEEEEeCCCHH-hHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcC-CHHHHHHHHHHcCCeEEEecC
Q 028986          101 PLYYRGAAVAVVVYDITSPD-SFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREV-PAQDGIEYAEKNGMFFIETSA  178 (200)
Q Consensus       101 ~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~S~  178 (200)
                      .....++|.+++|.... +. +...+..++-.....   ++|.++|+||+|+...... ..+.........+.+++.+|+
T Consensus       125 ~~i~anvD~v~iv~a~~-P~~~~~~i~r~L~~a~~~---~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa  200 (358)
T 2rcn_A          125 KPIAANIDQIVIVSAIL-PELSLNIIDRYLVGCETL---QVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSS  200 (358)
T ss_dssp             EEEEECCCEEEEEEEST-TTCCHHHHHHHHHHHHHH---TCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBT
T ss_pred             HHHHhcCCEEEEEEeCC-CCCCHHHHHHHHHHHHhc---CCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEec
Confidence            34578899999886654 43 344455555444333   6778999999999754320 011223344456889999999


Q ss_pred             CCCCCHHHHHHHH
Q 028986          179 KTADNINQLFEVL  191 (200)
Q Consensus       179 ~~~~~i~~~~~~i  191 (200)
                      .++.+++++...+
T Consensus       201 ~~~~gl~~L~~~~  213 (358)
T 2rcn_A          201 HTQDGLKPLEEAL  213 (358)
T ss_dssp             TTTBTHHHHHHHH
T ss_pred             CCCcCHHHHHHhc
Confidence            9999999887654

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=98.01  E-value=1e-05  Score=61.62  Aligned_cols=88  Identities=9%  Similarity=0.086  Sum_probs=48.6

Q ss_pred             EEEEEeCCChhhhhh-----c--ccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCc
Q 028986           84 KFEIWDTAGQERYAA-----L--APLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKRE  156 (200)
Q Consensus        84 ~~~l~D~~g~~~~~~-----~--~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~  156 (200)
                      .+.++|++|......     +  .... -..|-.++++|+....   .+......+.+...   ..++++||.|....  
T Consensus       213 d~vliDtaG~~~~~~~l~~eL~~i~ra-l~~de~llvLDa~t~~---~~~~~~~~~~~~~~---it~iilTKlD~~a~--  283 (328)
T 3e70_C          213 DVVLIDTAGRSETNRNLMDEMKKIARV-TKPNLVIFVGDALAGN---AIVEQARQFNEAVK---IDGIILTKLDADAR--  283 (328)
T ss_dssp             SEEEEEECCSCCTTTCHHHHHHHHHHH-HCCSEEEEEEEGGGTT---HHHHHHHHHHHHSC---CCEEEEECGGGCSC--
T ss_pred             hhhHHhhccchhHHHHHHHHHHHHHHH-hcCCCCEEEEecHHHH---HHHHHHHHHHHhcC---CCEEEEeCcCCccc--
Confidence            466799999532111     0  0111 1368899999977653   22222233332211   14678899996321  


Q ss_pred             CCHHHHHHHHHHcCCeEEEecCCCCCCH
Q 028986          157 VPAQDGIEYAEKNGMFFIETSAKTADNI  184 (200)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~S~~~~~~i  184 (200)
                        .-.+.......+.|+.+++  +|+++
T Consensus       284 --~G~~l~~~~~~~~pi~~i~--~Ge~v  307 (328)
T 3e70_C          284 --GGAALSISYVIDAPILFVG--VGQGY  307 (328)
T ss_dssp             --CHHHHHHHHHHTCCEEEEE--CSSST
T ss_pred             --hhHHHHHHHHHCCCEEEEe--CCCCc
Confidence              2335566677788888877  44443

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=97.84  E-value=1.4e-06  Score=69.78  Aligned_cols=102  Identities=16%  Similarity=0.095  Sum_probs=58.1

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhh--hhhcc--------
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQER--YAALA--------  100 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--~~~~~--------  100 (200)
                      ...+.|+++|.+||||||+.++|....... ...+............ .+......+||..|.+.  ....+        
T Consensus        37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~-~~~t~~~~~d~~r~~~-~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~  114 (469)
T 1bif_A           37 NCPTLIVMVGLPARGKTYISKKLTRYLNFI-GVPTREFNVGQYRRDM-VKTYKSFEFFLPDNEEGLKIRKQCALAALNDV  114 (469)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEHHHHHHHH-HCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHhcc-CCCceEEecchhhhhh-ccCCCcccccCCCCHHHHHHHHHHHHHHHHHH
Confidence            445789999999999999999998642111 0111110000000000 01112345789888732  22222        


Q ss_pred             cccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHc
Q 028986          101 PLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKH  135 (200)
Q Consensus       101 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~  135 (200)
                      ..++...++.++|+|.++. +.+....|+..+.+.
T Consensus       115 ~~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~  148 (469)
T 1bif_A          115 RKFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN  148 (469)
T ss_dssp             HHHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc
Confidence            4456567888999999987 455566676666654

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=97.75  E-value=4.8e-05  Score=60.20  Aligned_cols=25  Identities=24%  Similarity=0.238  Sum_probs=21.7

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHc
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~   55 (200)
                      .+..-|.|+|++++|||+|+|.|++
T Consensus        65 ~~v~vVsV~G~~~~GKStLLN~llg   89 (447)
T 3q5d_A           65 KEVVAVSVAGAFRKGKSFLMDFMLR   89 (447)
T ss_dssp             SBEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CceEEEEEECCCCCcHHHHHHHHhh
Confidence            3455688999999999999999986

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.70  E-value=2.3e-05  Score=54.42  Aligned_cols=23  Identities=35%  Similarity=0.772  Sum_probs=20.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcC
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .+++|+|++|+|||||++.+.+.
T Consensus         1 ~~i~l~G~nGsGKTTLl~~l~g~   23 (178)
T 1ye8_A            1 MKIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999999874

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.57  E-value=4.1e-05  Score=53.11  Aligned_cols=22  Identities=41%  Similarity=0.641  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      -++|+|++|||||||++.|.+.
T Consensus         7 ~i~i~GpsGsGKSTL~~~L~~~   28 (180)
T 1kgd_A            7 TLVLLGAHGVGRRHIKNTLITK   28 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            4889999999999999999874

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.54  E-value=4.7e-05  Score=53.68  Aligned_cols=22  Identities=36%  Similarity=0.619  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .++|+|++|||||||++.|.+.
T Consensus         6 ~i~lvGpsGaGKSTLl~~L~~~   27 (198)
T 1lvg_A            6 PVVLSGPSGAGKSTLLKKLFQE   27 (198)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            5899999999999999999873

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.50  E-value=9.9e-05  Score=56.75  Aligned_cols=24  Identities=33%  Similarity=0.425  Sum_probs=21.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQF   58 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~~   58 (200)
                      .++|+|++|||||||+|.|.+...
T Consensus       217 ~~~lvG~sG~GKSTLln~L~g~~~  240 (358)
T 2rcn_A          217 ISIFAGQSGVGKSSLLNALLGLQN  240 (358)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred             EEEEECCCCccHHHHHHHHhcccc
Confidence            589999999999999999998643

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.44  E-value=2.4e-05  Score=58.98  Aligned_cols=23  Identities=35%  Similarity=0.472  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQ   57 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~   57 (200)
                      .++|+|++|||||||+|.|.+..
T Consensus       175 ~~~lvG~sG~GKSTLln~L~g~~  197 (307)
T 1t9h_A          175 TTVFAGQSGVGKSSLLNAISPEL  197 (307)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC--
T ss_pred             EEEEECCCCCCHHHHHHHhcccc
Confidence            68999999999999999998854

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.44  E-value=7.4e-05  Score=52.64  Aligned_cols=22  Identities=27%  Similarity=0.543  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      -++|+|++|||||||++.|.+.
T Consensus         9 ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            9 LFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHhh
Confidence            4889999999999999999875

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=97.43  E-value=0.00083  Score=53.06  Aligned_cols=83  Identities=14%  Similarity=0.070  Sum_probs=44.3

Q ss_pred             EEEEEEeCCChhhhh-hccc-----ccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCe-EEEEEeCCCCCCCC
Q 028986           83 VKFEIWDTAGQERYA-ALAP-----LYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIV-MALVGNKADLHEKR  155 (200)
Q Consensus        83 ~~~~l~D~~g~~~~~-~~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~iiv~nK~D~~~~~  155 (200)
                      +.+.|+||||..... ....     .....+|.+++|+|+.......   .....+..    ..+ .-+|+||.|....-
T Consensus       184 ~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~---~~~~~f~~----~l~i~gvVlnK~D~~~~~  256 (433)
T 2xxa_A          184 YDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAA---NTAKAFNE----ALPLTGVVLTKVDGDARG  256 (433)
T ss_dssp             CSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHH---HHHHHHHH----HSCCCCEEEECTTSSSCC
T ss_pred             CCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHH---HHHHHHhc----cCCCeEEEEecCCCCccH
Confidence            578999999953221 1111     1133578999999988542221   11122222    122 34688999974321


Q ss_pred             cCCHHHHHHHHHHcCCeEEEe
Q 028986          156 EVPAQDGIEYAEKNGMFFIET  176 (200)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~  176 (200)
                          ..+.......+.++.++
T Consensus       257 ----g~~l~i~~~~~~Pi~~i  273 (433)
T 2xxa_A          257 ----GAALSIRHITGKPIKFL  273 (433)
T ss_dssp             ----THHHHHHHHHCCCEEEE
T ss_pred             ----HHHHHHHHHHCCCeEEE
Confidence                23345555566665444

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.42  E-value=7.9e-05  Score=51.92  Aligned_cols=22  Identities=36%  Similarity=0.437  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .|+|+|++|||||||++.|.+.
T Consensus        11 ~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A           11 ILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             EEEEEECTTSCHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            5899999999999999999885

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.42  E-value=8e-05  Score=52.81  Aligned_cols=22  Identities=41%  Similarity=0.462  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      -++|+|++|||||||++.+.+.
T Consensus        22 i~~l~GpnGsGKSTLl~~l~gl   43 (207)
T 1znw_A           22 VVVLSGPSAVGKSTVVRCLRER   43 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            4889999999999999999885

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.40  E-value=9e-05  Score=53.14  Aligned_cols=23  Identities=26%  Similarity=0.483  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQ   57 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~   57 (200)
                      -++|+|++|||||||++.|.+..
T Consensus        18 ii~l~GpsGsGKSTLlk~L~g~~   40 (219)
T 1s96_A           18 LYIVSAPSGAGKSSLIQALLKTQ   40 (219)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhccC
Confidence            58899999999999999998853

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=97.39  E-value=0.00013  Score=51.41  Aligned_cols=25  Identities=24%  Similarity=0.570  Sum_probs=21.6

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHc
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~   55 (200)
                      ...+.|+|.|++||||||+.+.|..
T Consensus        18 ~~~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           18 GSHMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3446799999999999999999975

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.38  E-value=9.4e-05  Score=52.98  Aligned_cols=22  Identities=36%  Similarity=0.693  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .++|+|++|||||||++.|.+.
T Consensus        25 ~~~lvGpsGsGKSTLl~~L~g~   46 (218)
T 1z6g_A           25 PLVICGPSGVGKGTLIKKLLNE   46 (218)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            4889999999999999999884

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.37  E-value=0.00011  Score=51.80  Aligned_cols=22  Identities=45%  Similarity=0.671  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      -|+|+|++|||||||++.|...
T Consensus        21 ~ivl~GPSGaGKsTL~~~L~~~   42 (197)
T 3ney_A           21 TLVLIGASGVGRSHIKNALLSQ   42 (197)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHhh
Confidence            5889999999999999999874

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=97.36  E-value=8.6e-05  Score=51.05  Aligned_cols=20  Identities=40%  Similarity=0.634  Sum_probs=17.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHH
Q 028986           35 KLVLLGDSGVGKSCIVLRFV   54 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~   54 (200)
                      -++++|++|||||||++.+.
T Consensus        11 i~~l~G~nGsGKSTl~~~~~   30 (171)
T 4gp7_A           11 LVVLIGSSGSGKSTFAKKHF   30 (171)
T ss_dssp             EEEEECCTTSCHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHc
Confidence            47899999999999999644

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.36  E-value=0.00012  Score=51.92  Aligned_cols=25  Identities=28%  Similarity=0.324  Sum_probs=21.7

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHcC
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      ....|+|+|++|||||||++.|.+.
T Consensus        21 ~g~~v~I~G~sGsGKSTl~~~l~~~   45 (208)
T 3c8u_A           21 GRQLVALSGAPGSGKSTLSNPLAAA   45 (208)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4457999999999999999999873

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.34  E-value=0.00047  Score=51.86  Aligned_cols=22  Identities=50%  Similarity=0.776  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQ   57 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~   57 (200)
                      .++++|++|+|||||+|.|. ..
T Consensus       167 i~~l~G~sG~GKSTLln~l~-~~  188 (302)
T 2yv5_A          167 ICILAGPSGVGKSSILSRLT-GE  188 (302)
T ss_dssp             EEEEECSTTSSHHHHHHHHH-SC
T ss_pred             EEEEECCCCCCHHHHHHHHH-Hh
Confidence            57899999999999999999 54

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=97.33  E-value=0.0012  Score=46.79  Aligned_cols=85  Identities=12%  Similarity=0.098  Sum_probs=54.1

Q ss_pred             EEEEEEeCCCh-hhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHH
Q 028986           83 VKFEIWDTAGQ-ERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQD  161 (200)
Q Consensus        83 ~~~~l~D~~g~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~  161 (200)
                      +.+.++|+|+. ..  ......+..+|.+|++...+ ..+...+..+++.+....  +.++.+|+|+.|.....  ...+
T Consensus        68 yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~~~~--~~~~  140 (209)
T 3cwq_A           68 YQNIVIDTQARPED--EDLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG--NNRFRILLTIIPPYPSK--DGDE  140 (209)
T ss_dssp             CSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC--SSSEEEEECSBCCTTSC--HHHH
T ss_pred             CCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc--CCCEEEEEEecCCccch--HHHH
Confidence            57899999876 32  12234566799999999875 445666666777776632  45688999999964311  1334


Q ss_pred             HHHHHHHcCCeEE
Q 028986          162 GIEYAEKNGMFFI  174 (200)
Q Consensus       162 ~~~~~~~~~~~~~  174 (200)
                      ..+..++.+.+++
T Consensus       141 ~~~~l~~~g~~v~  153 (209)
T 3cwq_A          141 ARQLLTTAGLPLF  153 (209)
T ss_dssp             HHHHHHHTTCCBC
T ss_pred             HHHHHHHcCCchh
Confidence            4555555665544

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=97.32  E-value=0.00018  Score=51.48  Aligned_cols=21  Identities=29%  Similarity=0.545  Sum_probs=18.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHc
Q 028986           35 KLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~   55 (200)
                      -|+|+|+|||||+|....|..
T Consensus        31 iI~llGpPGsGKgTqa~~L~~   51 (217)
T 3umf_A           31 VIFVLGGPGSGKGTQCEKLVQ   51 (217)
T ss_dssp             EEEEECCTTCCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            366789999999999999875

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.32  E-value=0.00013  Score=49.53  Aligned_cols=23  Identities=30%  Similarity=0.525  Sum_probs=20.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQ   57 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~   57 (200)
                      .++++|+.|+|||||++.+.+..
T Consensus        35 ~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           35 MVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            48899999999999999999854

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.32  E-value=0.00013  Score=51.82  Aligned_cols=22  Identities=36%  Similarity=0.524  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      -|+|+|++|||||||++.|...
T Consensus        10 ~i~l~GpsGsGKsTl~~~L~~~   31 (208)
T 3tau_A           10 LIVLSGPSGVGKGTVREAVFKD   31 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHhh
Confidence            4889999999999999999875

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=97.31  E-value=0.00011  Score=53.19  Aligned_cols=22  Identities=27%  Similarity=0.279  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .++|+|++|||||||++.+.+-
T Consensus        33 ~~~iiG~nGsGKSTLl~~l~Gl   54 (235)
T 3tif_A           33 FVSIMGPSGSGKSTMLNIIGCL   54 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            4789999999999999999884

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.29  E-value=0.00015  Score=50.54  Aligned_cols=21  Identities=33%  Similarity=0.619  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 028986           36 LVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        36 i~i~G~~~sGKSsli~~l~~~   56 (200)
                      |+|+||+||||+||+++|...
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999864

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.28  E-value=0.00015  Score=49.63  Aligned_cols=22  Identities=32%  Similarity=0.528  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .|+|+|++||||||+++.|...
T Consensus         6 ~i~l~G~~GsGKSTl~~~La~~   27 (173)
T 1kag_A            6 NIFLVGPMGAGKSTIGRQLAQQ   27 (173)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5999999999999999999874

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=97.25  E-value=0.00014  Score=52.36  Aligned_cols=22  Identities=27%  Similarity=0.350  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .++|+|++|||||||++.+.+-
T Consensus        32 ~~~iiG~nGsGKSTLl~~l~Gl   53 (224)
T 2pcj_A           32 FVSIIGASGSGKSTLLYILGLL   53 (224)
T ss_dssp             EEEEEECTTSCHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999884

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=97.25  E-value=0.00017  Score=52.42  Aligned_cols=22  Identities=36%  Similarity=0.415  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .++|+|++|||||||++.+.+-
T Consensus        26 ~~~liG~nGsGKSTLl~~l~Gl   47 (240)
T 2onk_A           26 YCVLLGPTGAGKSVFLELIAGI   47 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999985

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.24  E-value=0.00018  Score=49.04  Aligned_cols=20  Identities=25%  Similarity=0.336  Sum_probs=18.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHH
Q 028986           34 VKLVLLGDSGVGKSCIVLRF   53 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l   53 (200)
                      +.|+|.|++||||||+.+.|
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            35899999999999999999

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.23  E-value=0.00018  Score=50.82  Aligned_cols=23  Identities=35%  Similarity=0.587  Sum_probs=20.3

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcC
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .-|+|+|++|||||||++.|...
T Consensus        13 ~~i~l~G~sGsGKsTl~~~L~~~   35 (204)
T 2qor_A           13 PPLVVCGPSGVGKGTLIKKVLSE   35 (204)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHh
Confidence            35899999999999999999864

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.23  E-value=0.00018  Score=50.05  Aligned_cols=21  Identities=33%  Similarity=0.548  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHc
Q 028986           35 KLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~   55 (200)
                      -++++|++|||||||++.|..
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            478999999999999999986

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.23  E-value=0.00018  Score=50.69  Aligned_cols=23  Identities=39%  Similarity=0.564  Sum_probs=20.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQ   57 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~   57 (200)
                      .|+|+|++||||||+++.|.+..
T Consensus         8 ~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            8 LIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHCT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhh
Confidence            58999999999999999998854

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.22  E-value=0.00019  Score=50.50  Aligned_cols=22  Identities=32%  Similarity=0.483  Sum_probs=19.9

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHc
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~   55 (200)
                      -.|+|+|++|||||||++.|.+
T Consensus        30 ~~i~l~G~~GsGKSTl~~~L~~   51 (200)
T 4eun_A           30 RHVVVMGVSGSGKTTIAHGVAD   51 (200)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3688999999999999999976

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=97.21  E-value=0.00018  Score=51.40  Aligned_cols=22  Identities=18%  Similarity=0.356  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .++|+|+.|||||||++.+.+.
T Consensus        37 ~~~iiG~NGsGKSTLlk~l~Gl   58 (214)
T 1sgw_A           37 VVNFHGPNGIGKTTLLKTISTY   58 (214)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999885

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=97.21  E-value=0.0002  Score=50.06  Aligned_cols=22  Identities=27%  Similarity=0.498  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .++|+|++|+|||||++.+.+.
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~   24 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhh
Confidence            5899999999999999999874

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=97.21  E-value=0.00018  Score=53.45  Aligned_cols=23  Identities=35%  Similarity=0.469  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQ   57 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~   57 (200)
                      .++|+|++|||||||++.+.+-.
T Consensus        36 ~~~iiGpnGsGKSTLl~~l~Gl~   58 (275)
T 3gfo_A           36 VTAILGGNGVGKSTLFQNFNGIL   58 (275)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            47899999999999999998853

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.20  E-value=0.00021  Score=50.57  Aligned_cols=23  Identities=17%  Similarity=0.355  Sum_probs=20.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcC
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      ..|+|+|++|||||||++.|.+.
T Consensus         7 ~~i~i~G~~GsGKSTl~~~l~~~   29 (211)
T 3asz_A            7 FVIGIAGGTASGKTTLAQALART   29 (211)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHH
Confidence            46999999999999999999773

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=97.20  E-value=0.00018  Score=53.04  Aligned_cols=22  Identities=27%  Similarity=0.330  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .++|+|++|||||||++.+.+-
T Consensus        34 ~~~liG~nGsGKSTLlk~l~Gl   55 (262)
T 1b0u_A           34 VISIIGSSGSGKSTFLRCINFL   55 (262)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999885

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.19  E-value=0.00026  Score=48.67  Aligned_cols=22  Identities=27%  Similarity=0.443  Sum_probs=20.0

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHc
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~   55 (200)
                      ..|+|.|++||||||+++.|..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            3588999999999999999987

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=97.19  E-value=0.00019  Score=52.13  Aligned_cols=22  Identities=23%  Similarity=0.499  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .++|+|++|||||||++.+.+.
T Consensus        33 ~~~i~G~nGsGKSTLl~~l~Gl   54 (237)
T 2cbz_A           33 LVAVVGQVGCGKSSLLSALLAE   54 (237)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999999884

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.17  E-value=0.00025  Score=51.64  Aligned_cols=21  Identities=33%  Similarity=0.673  Sum_probs=19.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHHH
Q 028986           34 VKLVLLGDSGVGKSCIVLRFV   54 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~   54 (200)
                      ..|+|+|++|||||||++.|.
T Consensus        28 ~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           28 LRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            479999999999999999998

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.17  E-value=0.00023  Score=48.58  Aligned_cols=22  Identities=18%  Similarity=0.255  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .|+|.|++||||||+++.|...
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~   24 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKE   24 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5889999999999999999753

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=97.17  E-value=0.00023  Score=50.58  Aligned_cols=22  Identities=27%  Similarity=0.549  Sum_probs=19.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHc
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~   55 (200)
                      ++|+|.|++||||||+++.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            1 MNIVLMGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999999964

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=97.17  E-value=0.0002  Score=52.63  Aligned_cols=23  Identities=22%  Similarity=0.326  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQ   57 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~   57 (200)
                      .++|+|++|||||||++.+.+-.
T Consensus        35 ~~~liG~nGsGKSTLlk~l~Gl~   57 (257)
T 1g6h_A           35 VTLIIGPNGSGKSTLINVITGFL   57 (257)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998853

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=97.17  E-value=0.00022  Score=52.49  Aligned_cols=22  Identities=23%  Similarity=0.440  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .++|+|++|||||||++.+.+.
T Consensus        27 ~v~i~Gp~GsGKSTll~~l~g~   48 (261)
T 2eyu_A           27 LILVTGPTGSGKSTTIASMIDY   48 (261)
T ss_dssp             EEEEECSTTCSHHHHHHHHHHH
T ss_pred             EEEEECCCCccHHHHHHHHHHh
Confidence            5899999999999999999873

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=97.16  E-value=0.0002  Score=52.85  Aligned_cols=23  Identities=22%  Similarity=0.388  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQ   57 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~   57 (200)
                      .++|+|++|||||||++.+.+-.
T Consensus        39 ~~~liG~nGsGKSTLl~~l~Gl~   61 (266)
T 4g1u_C           39 MVAIIGPNGAGKSTLLRLLTGYL   61 (266)
T ss_dssp             EEEEECCTTSCHHHHHHHHTSSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            47899999999999999998853

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=97.16  E-value=0.00022  Score=51.51  Aligned_cols=22  Identities=23%  Similarity=0.543  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .++|+|+.|||||||++.+.+.
T Consensus        36 ~~~i~G~nGsGKSTLl~~l~Gl   57 (229)
T 2pze_A           36 LLAVAGSTGAGKTSLLMMIMGE   57 (229)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999885

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=97.16  E-value=0.00023  Score=51.83  Aligned_cols=22  Identities=36%  Similarity=0.363  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .++|+|++|||||||++.+.+-
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~Gl   51 (243)
T 1mv5_A           30 IIAFAGPSGGGKSTIFSLLERF   51 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5889999999999999999885

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=97.15  E-value=0.00026  Score=50.33  Aligned_cols=22  Identities=41%  Similarity=0.569  Sum_probs=19.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHc
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~   55 (200)
                      ++|+|+|++||||||+++.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            1 MNLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999999965

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=97.15  E-value=0.00022  Score=52.62  Aligned_cols=22  Identities=32%  Similarity=0.378  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .++|+|++|||||||++.+.+-
T Consensus        52 i~~liG~NGsGKSTLlk~l~Gl   73 (263)
T 2olj_A           52 VVVVIGPSGSGKSTFLRCLNLL   73 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Confidence            4789999999999999999885

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=97.15  E-value=0.00022  Score=52.13  Aligned_cols=22  Identities=32%  Similarity=0.388  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .++|+|++|||||||++.+.+-
T Consensus        37 ~~~i~G~nGsGKSTLl~~l~Gl   58 (247)
T 2ff7_A           37 VIGIVGRSGSGKSTLTKLIQRF   58 (247)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999885

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=97.15  E-value=0.00024  Score=53.42  Aligned_cols=21  Identities=24%  Similarity=0.464  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHc
Q 028986           35 KLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~   55 (200)
                      .++|+|++|+|||||++.|.+
T Consensus       128 ~vaIvGpsGsGKSTLl~lL~g  148 (305)
T 2v9p_A          128 CLAFIGPPNTGKSMLCNSLIH  148 (305)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhh
Confidence            689999999999999999986

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.14  E-value=0.00036  Score=47.87  Aligned_cols=22  Identities=36%  Similarity=0.492  Sum_probs=19.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHc
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~   55 (200)
                      ..|+|+|++||||||+++.|.+
T Consensus         9 ~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            9 HIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHH
Confidence            3689999999999999999875

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.14  E-value=0.00022  Score=51.83  Aligned_cols=22  Identities=23%  Similarity=0.386  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .++|+|++|||||||++.+.+-
T Consensus        34 ~~~l~G~nGsGKSTLl~~l~Gl   55 (240)
T 1ji0_A           34 IVTLIGANGAGKTTTLSAIAGL   55 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999885

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=97.14  E-value=0.00025  Score=51.85  Aligned_cols=22  Identities=27%  Similarity=0.373  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .++|+|++|+|||||++.+.+-
T Consensus        31 ~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           31 VHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999985

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.13  E-value=0.00023  Score=52.25  Aligned_cols=22  Identities=23%  Similarity=0.300  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .++|+|+.|||||||++.+.+-
T Consensus        43 i~~l~G~NGsGKSTLlk~l~Gl   64 (256)
T 1vpl_A           43 IFGLIGPNGAGKTTTLRIISTL   64 (256)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999885

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=97.13  E-value=0.00027  Score=52.24  Aligned_cols=22  Identities=23%  Similarity=0.403  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .++|+|++|||||||++.+.+-
T Consensus        48 ~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           48 VHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999995

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=97.12  E-value=0.00024  Score=51.93  Aligned_cols=22  Identities=36%  Similarity=0.546  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .++|+|++|+|||||++.+.+-
T Consensus        28 ~~~liG~NGsGKSTLlk~l~Gl   49 (249)
T 2qi9_C           28 ILHLVGPNGAGKSTLLARMAGM   49 (249)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            4789999999999999999885

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=97.12  E-value=0.00019  Score=51.02  Aligned_cols=22  Identities=23%  Similarity=0.330  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .++|+|++|||||||++.+.+.
T Consensus        24 ~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           24 IVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             EEEEECCTTSSTTHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999885

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.12  E-value=0.00022  Score=49.21  Aligned_cols=23  Identities=26%  Similarity=0.572  Sum_probs=20.3

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcC
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      -.++++|++|+|||||++.+.+.
T Consensus        39 ~~~~l~G~~G~GKTtL~~~i~~~   61 (180)
T 3ec2_A           39 KGLTFVGSPGVGKTHLAVATLKA   61 (180)
T ss_dssp             CEEEECCSSSSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999999874

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=97.11  E-value=0.00032  Score=49.79  Aligned_cols=22  Identities=36%  Similarity=0.625  Sum_probs=19.9

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHc
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~   55 (200)
                      ++|+|+|+|||||+|....|..
T Consensus         1 M~Iil~GpPGsGKgTqa~~La~   22 (206)
T 3sr0_A            1 MILVFLGPPGAGKGTQAKRLAK   22 (206)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999876

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.11  E-value=0.00029  Score=49.63  Aligned_cols=21  Identities=33%  Similarity=0.561  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHc
Q 028986           35 KLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~   55 (200)
                      +|+|+|++||||||+++.|..
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHH
Confidence            699999999999999999987

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.11  E-value=0.00031  Score=49.45  Aligned_cols=23  Identities=30%  Similarity=0.430  Sum_probs=20.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcC
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      ..|+|+|++||||||+++.|...
T Consensus        19 ~~I~l~G~~GsGKSTla~~L~~~   41 (202)
T 3t61_A           19 GSIVVMGVSGSGKSSVGEAIAEA   41 (202)
T ss_dssp             SCEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            46999999999999999999763

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=97.10  E-value=0.00025  Score=52.18  Aligned_cols=22  Identities=36%  Similarity=0.460  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .++|+|++|||||||++.+.+-
T Consensus        48 ~~~i~G~nGsGKSTLl~~l~Gl   69 (260)
T 2ghi_A           48 TCALVGHTGSGKSTIAKLLYRF   69 (260)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            5889999999999999999885

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=97.10  E-value=0.00032  Score=49.31  Aligned_cols=21  Identities=33%  Similarity=0.585  Sum_probs=19.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHc
Q 028986           35 KLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~   55 (200)
                      .|+++|++||||||+.+.|..
T Consensus        27 ~i~l~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           27 RIFLTGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            699999999999999999975

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=97.09  E-value=0.00029  Score=52.43  Aligned_cols=22  Identities=27%  Similarity=0.380  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .++|+|++|||||||++.+.+.
T Consensus        49 ~~~liG~NGsGKSTLlk~l~Gl   70 (279)
T 2ihy_A           49 KWILYGLNGAGKTTLLNILNAY   70 (279)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            4789999999999999999885

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=97.09  E-value=0.00026  Score=52.41  Aligned_cols=22  Identities=27%  Similarity=0.350  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .++|+|++|||||||++.+.+-
T Consensus        47 ~~~i~G~nGsGKSTLlk~l~Gl   68 (271)
T 2ixe_A           47 VTALVGPNGSGKSTVAALLQNL   68 (271)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999885

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=97.09  E-value=0.00033  Score=50.11  Aligned_cols=22  Identities=23%  Similarity=0.377  Sum_probs=20.1

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHc
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~   55 (200)
                      ..|+|+|++||||||+++.|..
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~   27 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAE   27 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999875

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.08  E-value=0.00031  Score=48.26  Aligned_cols=22  Identities=36%  Similarity=0.379  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .|++.|++||||||+.+.|...
T Consensus         5 ~i~l~G~~GsGKST~a~~La~~   26 (178)
T 1qhx_A            5 MIILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            5889999999999999999874

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=97.08  E-value=0.00041  Score=47.82  Aligned_cols=23  Identities=26%  Similarity=0.459  Sum_probs=20.3

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHc
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~   55 (200)
                      ...|+|+|++||||||+++.|..
T Consensus        11 ~~~i~i~G~~GsGKst~~~~l~~   33 (180)
T 3iij_A           11 LPNILLTGTPGVGKTTLGKELAS   33 (180)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHH
Confidence            34699999999999999999974

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=97.08  E-value=0.00032  Score=49.39  Aligned_cols=24  Identities=25%  Similarity=0.259  Sum_probs=20.7

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHcC
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      ...|+|+|++|||||||++.|.+.
T Consensus        25 g~~i~l~G~sGsGKSTl~~~La~~   48 (200)
T 3uie_A           25 GCVIWVTGLSGSGKSTLACALNQM   48 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            346889999999999999998763

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=97.06  E-value=0.00029  Score=51.64  Aligned_cols=23  Identities=30%  Similarity=0.468  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQ   57 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~   57 (200)
                      .++|+|++|||||||++.+.+-.
T Consensus        33 ~~~l~G~nGsGKSTLl~~l~Gl~   55 (253)
T 2nq2_C           33 ILAVLGQNGCGKSTLLDLLLGIH   55 (253)
T ss_dssp             EEEEECCSSSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998853

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=97.06  E-value=0.00052  Score=51.89  Aligned_cols=26  Identities=19%  Similarity=0.135  Sum_probs=22.1

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcC
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      ....-|+|+|++|||||||++.|.+.
T Consensus        88 ~~g~ivgI~G~sGsGKSTL~~~L~gl  113 (312)
T 3aez_A           88 PVPFIIGVAGSVAVGKSTTARVLQAL  113 (312)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCchHHHHHHHHHhh
Confidence            44557899999999999999999873

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=97.05  E-value=0.0003  Score=51.96  Aligned_cols=22  Identities=27%  Similarity=0.401  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .++|+|+.|||||||++.+.+-
T Consensus        35 ~~~liG~nGsGKSTLl~~i~Gl   56 (266)
T 2yz2_A           35 CLLVAGNTGSGKSTLLQIVAGL   56 (266)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            4789999999999999999885

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.05  E-value=0.00038  Score=48.82  Aligned_cols=21  Identities=33%  Similarity=0.629  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHc
Q 028986           35 KLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~   55 (200)
                      .|+|.|.+||||||+++.|..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            589999999999999999976

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=97.05  E-value=0.00038  Score=52.32  Aligned_cols=24  Identities=33%  Similarity=0.347  Sum_probs=21.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQF   58 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~~   58 (200)
                      .++++|++|||||||+|.|.+...
T Consensus       171 iv~l~G~sG~GKSTll~~l~g~~~  194 (301)
T 1u0l_A          171 ISTMAGLSGVGKSSLLNAINPGLK  194 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTCC
T ss_pred             eEEEECCCCCcHHHHHHHhccccc
Confidence            578999999999999999998643

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=97.04  E-value=0.00042  Score=48.85  Aligned_cols=22  Identities=32%  Similarity=0.379  Sum_probs=20.1

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHc
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~   55 (200)
                      +.|+++|++||||||+.+.|..
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999976

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=97.04  E-value=0.00042  Score=48.62  Aligned_cols=26  Identities=19%  Similarity=0.254  Sum_probs=22.6

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcC
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .+...|+|+|++||||||+.+.|...
T Consensus         6 ~~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            6 KHPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHC
Confidence            34567999999999999999999875

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.04  E-value=0.00049  Score=47.62  Aligned_cols=23  Identities=26%  Similarity=0.510  Sum_probs=20.4

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHc
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~   55 (200)
                      ...|+++|++||||||+.+.|..
T Consensus         4 g~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            4 GQAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            34799999999999999999974

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.04  E-value=0.00039  Score=47.96  Aligned_cols=22  Identities=23%  Similarity=0.419  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      -++|+|++|||||||+++|...
T Consensus         8 ~i~i~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A            8 LLAFAAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHh
Confidence            5789999999999999999874

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=97.03  E-value=0.00022  Score=51.39  Aligned_cols=22  Identities=32%  Similarity=0.529  Sum_probs=14.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHH-cC
Q 028986           35 KLVLLGDSGVGKSCIVLRFV-RG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~-~~   56 (200)
                      -++|+|++|||||||++.|. +.
T Consensus        29 ii~l~Gp~GsGKSTl~~~L~~~~   51 (231)
T 3lnc_A           29 ILVLSSPSGCGKTTVANKLLEKQ   51 (231)
T ss_dssp             EEEEECSCC----CHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            48899999999999999999 64

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=97.03  E-value=0.00048  Score=50.11  Aligned_cols=24  Identities=25%  Similarity=0.450  Sum_probs=21.6

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHc
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~   55 (200)
                      ..++|+|.|++||||||+++.|..
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            467899999999999999999965

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.02  E-value=0.00046  Score=48.00  Aligned_cols=22  Identities=14%  Similarity=0.374  Sum_probs=19.9

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHc
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~   55 (200)
                      ..|+|.|++||||||+++.|..
T Consensus         6 ~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            6 ALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999975

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=97.02  E-value=0.00035  Score=50.00  Aligned_cols=22  Identities=18%  Similarity=0.258  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      -++|+|++|||||||++.+.+.
T Consensus        27 ~~~l~G~nGsGKSTll~~l~g~   48 (231)
T 4a74_A           27 ITEVFGEFGSGKTQLAHTLAVM   48 (231)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4889999999999999999874

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=97.01  E-value=0.00038  Score=51.28  Aligned_cols=23  Identities=26%  Similarity=0.478  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQ   57 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~   57 (200)
                      .++|+|++|||||||++.+.+..
T Consensus        32 ~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           32 KVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999998854

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=97.01  E-value=0.00045  Score=47.94  Aligned_cols=21  Identities=29%  Similarity=0.430  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHc
Q 028986           35 KLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~   55 (200)
                      .|+|.|++||||||+++.|..
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999876

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=96.99  E-value=0.00043  Score=49.22  Aligned_cols=22  Identities=23%  Similarity=0.422  Sum_probs=19.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHc
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~   55 (200)
                      ++|+|.|++||||||+++.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            1 MRIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999999865

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=96.99  E-value=0.00052  Score=47.59  Aligned_cols=24  Identities=17%  Similarity=0.443  Sum_probs=21.1

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHcC
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      ..+|+++|++||||||+.+.|...
T Consensus        10 ~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A           10 GINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHh
Confidence            347999999999999999999764

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=96.98  E-value=0.0005  Score=47.68  Aligned_cols=22  Identities=23%  Similarity=0.252  Sum_probs=19.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHc
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~   55 (200)
                      ..|+|.|++||||||+++.|..
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999999865

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=96.98  E-value=0.00066  Score=51.47  Aligned_cols=26  Identities=19%  Similarity=0.187  Sum_probs=22.2

Q ss_pred             CCceeeEEEEcCCCCcHHHHHHHHHc
Q 028986           30 KNLRVKLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        30 ~~~~~~i~i~G~~~sGKSsli~~l~~   55 (200)
                      ....+-|+|+|++|||||||++.|.+
T Consensus        89 ~~~p~iigI~GpsGSGKSTl~~~L~~  114 (321)
T 3tqc_A           89 PKVPYIIGIAGSVAVGKSTTSRVLKA  114 (321)
T ss_dssp             CCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            34567799999999999999999865

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=96.97  E-value=0.00047  Score=47.31  Aligned_cols=21  Identities=29%  Similarity=0.548  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHc
Q 028986           35 KLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~   55 (200)
                      +|+|+|++||||||+.+.|..
T Consensus         6 ~i~i~G~~GsGKsTla~~La~   26 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAK   26 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            599999999999999999865

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=96.97  E-value=0.00063  Score=48.01  Aligned_cols=24  Identities=13%  Similarity=0.228  Sum_probs=21.3

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHcC
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      ...|+|+|++|||||||++.|.+.
T Consensus        21 ~~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           21 TFIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHh
Confidence            356999999999999999999874

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=96.96  E-value=0.00078  Score=47.32  Aligned_cols=23  Identities=26%  Similarity=0.488  Sum_probs=20.3

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHc
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~   55 (200)
                      ...|+|.|.+||||||+.+.|..
T Consensus        15 ~~~I~l~G~~GsGKsT~~~~L~~   37 (203)
T 1ukz_A           15 VSVIFVLGGPGAGKGTQCEKLVK   37 (203)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999975

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=96.96  E-value=0.0005  Score=47.56  Aligned_cols=22  Identities=23%  Similarity=0.495  Sum_probs=19.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHc
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~   55 (200)
                      ..|+++|++||||||+.+.|..
T Consensus         6 ~~i~l~G~~GsGKst~a~~La~   27 (185)
T 3trf_A            6 TNIYLIGLMGAGKTSVGSQLAK   27 (185)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999999965

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=96.96  E-value=0.00054  Score=48.88  Aligned_cols=23  Identities=26%  Similarity=0.557  Sum_probs=20.5

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHc
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~   55 (200)
                      .+.|+|+|++||||||+.+.|..
T Consensus         4 ~~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            4 SIRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999865

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.95  E-value=0.0012  Score=46.50  Aligned_cols=22  Identities=27%  Similarity=0.601  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .+++.|++|+|||+|++.+...
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~~   61 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALARD   61 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4999999999999999998763

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=96.95  E-value=0.00023  Score=49.00  Aligned_cols=22  Identities=27%  Similarity=0.475  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .++|+|++|||||||++.|.+.
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~~   25 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMPI   25 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5889999999999999999884

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=96.94  E-value=0.0006  Score=47.38  Aligned_cols=23  Identities=30%  Similarity=0.534  Sum_probs=20.2

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHc
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~   55 (200)
                      ...|+|.|.+||||||+.+.|..
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            35699999999999999998865

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=96.94  E-value=0.00057  Score=49.69  Aligned_cols=22  Identities=18%  Similarity=0.341  Sum_probs=20.2

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHc
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~   55 (200)
                      ..|+|+|+.|||||||++.|.+
T Consensus        26 ~iigI~G~~GsGKSTl~k~L~~   47 (245)
T 2jeo_A           26 FLIGVSGGTASGKSTVCEKIME   47 (245)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999999977

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=96.94  E-value=0.00042  Score=53.54  Aligned_cols=24  Identities=25%  Similarity=0.403  Sum_probs=21.7

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHcC
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .-+++|+|++|||||||++.|.+.
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl  193 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAV  193 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999999885

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=96.94  E-value=0.0003  Score=53.03  Aligned_cols=22  Identities=45%  Similarity=0.596  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .++|+|++|||||||++.+.+-
T Consensus        82 ~vaivG~sGsGKSTLl~ll~gl  103 (306)
T 3nh6_A           82 TLALVGPSGAGKSTILRLLFRF  103 (306)
T ss_dssp             EEEEESSSCHHHHHHHHHHTTS
T ss_pred             EEEEECCCCchHHHHHHHHHcC
Confidence            5889999999999999998874

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=96.94  E-value=0.00046  Score=53.14  Aligned_cols=22  Identities=23%  Similarity=0.380  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .|+|+|++|||||||++.+.+.
T Consensus       125 ~i~I~GptGSGKTTlL~~l~g~  146 (356)
T 3jvv_A          125 LVLVTGPTGSGKSTTLAAMLDY  146 (356)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            6999999999999999999773

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=96.94  E-value=0.00048  Score=51.09  Aligned_cols=21  Identities=24%  Similarity=0.461  Sum_probs=19.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 028986           36 LVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        36 i~i~G~~~sGKSsli~~l~~~   56 (200)
                      ++++|++|+|||+|++.+.+.
T Consensus        47 vlL~Gp~GtGKTtLakala~~   67 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANE   67 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            999999999999999999884

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.94  E-value=0.00056  Score=46.49  Aligned_cols=21  Identities=29%  Similarity=0.344  Sum_probs=19.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHc
Q 028986           35 KLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~   55 (200)
                      +|+|.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999999976

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=96.93  E-value=0.00045  Score=53.12  Aligned_cols=23  Identities=26%  Similarity=0.455  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQ   57 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~   57 (200)
                      -++++|++|||||||++.+.+-.
T Consensus        32 ~~~llGpsGsGKSTLLr~iaGl~   54 (359)
T 3fvq_A           32 ILFIIGASGCGKTTLLRCLAGFE   54 (359)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCchHHHHHHHHhcCC
Confidence            37899999999999999999854

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=96.92  E-value=0.00034  Score=46.96  Aligned_cols=22  Identities=27%  Similarity=0.519  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .++++|++|+|||+|++.+.+.
T Consensus        38 ~~~l~G~~G~GKTtL~~~i~~~   59 (149)
T 2kjq_A           38 FIYVWGEEGAGKSHLLQAWVAQ   59 (149)
T ss_dssp             EEEEESSSTTTTCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5889999999999999999884

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=96.91  E-value=0.00064  Score=47.93  Aligned_cols=22  Identities=27%  Similarity=0.291  Sum_probs=20.2

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHc
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~   55 (200)
                      ..|+|.|++||||||+++.|..
T Consensus         5 ~~I~i~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A            5 VLIAFEGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Confidence            5699999999999999999976

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=96.91  E-value=0.00044  Score=51.71  Aligned_cols=22  Identities=23%  Similarity=0.543  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .++|+|+.|||||||++.+.+.
T Consensus        66 ~~~i~G~NGsGKSTLlk~l~Gl   87 (290)
T 2bbs_A           66 LLAVAGSTGAGKTSLLMMIMGE   87 (290)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            4789999999999999999885

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=96.91  E-value=0.00055  Score=52.76  Aligned_cols=23  Identities=26%  Similarity=0.297  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQ   57 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~   57 (200)
                      -++|+|++|||||||++.+.+-.
T Consensus        56 i~~IiGpnGaGKSTLlr~i~GL~   78 (366)
T 3tui_C           56 IYGVIGASGAGKSTLIRCVNLLE   78 (366)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHhcCC
Confidence            36799999999999999998853

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=96.90  E-value=0.00054  Score=52.64  Aligned_cols=23  Identities=35%  Similarity=0.413  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQ   57 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~   57 (200)
                      -++++|++|||||||++.+.+-.
T Consensus        43 ~~~llGpnGsGKSTLLr~iaGl~   65 (355)
T 1z47_A           43 MVGLLGPSGSGKTTILRLIAGLE   65 (355)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47899999999999999999853

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=96.89  E-value=0.00067  Score=50.63  Aligned_cols=24  Identities=21%  Similarity=0.342  Sum_probs=21.0

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHc
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~   55 (200)
                      ...-|+|.|++||||||+++.|..
T Consensus        32 ~~~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           32 SPTAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            345789999999999999999975

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.89  E-value=0.0007  Score=48.82  Aligned_cols=23  Identities=35%  Similarity=0.601  Sum_probs=20.6

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHc
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~   55 (200)
                      ...|+|+|.+||||||+.+.|..
T Consensus        16 ~~~I~l~G~~GsGKsT~a~~La~   38 (233)
T 1ak2_A           16 GVRAVLLGPPGAGKGTQAPKLAK   38 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999975

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=96.88  E-value=0.00081  Score=50.29  Aligned_cols=25  Identities=20%  Similarity=0.341  Sum_probs=21.5

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHc
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~   55 (200)
                      .....|+|+|++|||||||++.|..
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~   53 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYN   53 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3456799999999999999998865

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=96.88  E-value=0.00058  Score=49.81  Aligned_cols=22  Identities=27%  Similarity=0.502  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .++++|++|+|||+|++.+.+.
T Consensus        51 g~ll~G~~G~GKTtl~~~i~~~   72 (254)
T 1ixz_A           51 GVLLVGPPGVGKTHLARAVAGE   72 (254)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            3899999999999999999874

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=96.88  E-value=0.00058  Score=52.58  Aligned_cols=23  Identities=35%  Similarity=0.443  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQ   57 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~   57 (200)
                      -++++|++|||||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (359)
T 2yyz_A           31 FVALLGPSGCGKTTTLLMLAGIY   53 (359)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHHCCC
Confidence            37899999999999999999853

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=96.87  E-value=0.0006  Score=52.56  Aligned_cols=23  Identities=35%  Similarity=0.452  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQ   57 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~   57 (200)
                      -++++|++|||||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (362)
T 2it1_A           31 FMALLGPSGSGKSTLLYTIAGIY   53 (362)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCchHHHHHHHHhcCC
Confidence            47899999999999999999853

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=96.87  E-value=0.00061  Score=52.81  Aligned_cols=23  Identities=30%  Similarity=0.436  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQ   57 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~   57 (200)
                      -++++|++|||||||++.+.+-.
T Consensus        31 ~~~llGpsGsGKSTLLr~iaGl~   53 (381)
T 3rlf_A           31 FVVFVGPSGCGKSTLLRMIAGLE   53 (381)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHHcCC
Confidence            37899999999999999999853

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=96.86  E-value=0.00095  Score=44.31  Aligned_cols=23  Identities=17%  Similarity=0.307  Sum_probs=20.1

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcC
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      ..|++.|++|+|||++++.+...
T Consensus        28 ~~vll~G~~GtGKt~lA~~i~~~   50 (143)
T 3co5_A           28 SPVFLTGEAGSPFETVARYFHKN   50 (143)
T ss_dssp             SCEEEEEETTCCHHHHHGGGCCT
T ss_pred             CcEEEECCCCccHHHHHHHHHHh
Confidence            46999999999999999888763

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.86  E-value=0.00062  Score=48.63  Aligned_cols=22  Identities=18%  Similarity=0.262  Sum_probs=20.0

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHc
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~   55 (200)
                      ..|+|+|++||||||+.+.|..
T Consensus         6 ~~I~l~G~~GsGKsT~~~~La~   27 (222)
T 1zak_A            6 LKVMISGAPASGKGTQCELIKT   27 (222)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999865

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.86  E-value=0.00066  Score=48.71  Aligned_cols=22  Identities=27%  Similarity=0.604  Sum_probs=20.0

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHc
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~   55 (200)
                      ..|+|.|++||||||+++.|..
T Consensus         8 ~~I~l~G~~GsGKsT~a~~La~   29 (227)
T 1zd8_A            8 LRAVIMGAPGSGKGTVSSRITT   29 (227)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999974

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.84  E-value=0.00074  Score=48.37  Aligned_cols=21  Identities=19%  Similarity=0.319  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHc
Q 028986           35 KLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~   55 (200)
                      .|+|.|++||||||+++.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999865

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.84  E-value=0.00075  Score=46.46  Aligned_cols=23  Identities=39%  Similarity=0.641  Sum_probs=20.2

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcC
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      -.++|.|++|+|||+|++.+...
T Consensus        44 ~~~ll~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           44 NNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHH
Confidence            35899999999999999998764

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.84  E-value=0.001  Score=49.41  Aligned_cols=25  Identities=36%  Similarity=0.328  Sum_probs=21.7

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHc
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~   55 (200)
                      ...+.|+|.|.+||||||+.+.|..
T Consensus        73 ~~~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           73 SGLYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3456899999999999999999874

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=96.84  E-value=0.00075  Score=46.99  Aligned_cols=22  Identities=23%  Similarity=0.433  Sum_probs=19.9

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHc
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~   55 (200)
                      ..|+|.|++||||||+.+.|..
T Consensus        10 ~~I~l~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A           10 NIIFVVGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999999865

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=96.84  E-value=0.00065  Score=52.58  Aligned_cols=23  Identities=30%  Similarity=0.447  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQ   57 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~   57 (200)
                      -++++|++|||||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (372)
T 1g29_1           31 FMILLGPSGCGKTTTLRMIAGLE   53 (372)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCcHHHHHHHHHHcCC
Confidence            37899999999999999999853

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=96.83  E-value=0.00067  Score=52.49  Aligned_cols=23  Identities=39%  Similarity=0.469  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQ   57 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~   57 (200)
                      -++++|++|||||||++.+.+-.
T Consensus        39 ~~~llGpnGsGKSTLLr~iaGl~   61 (372)
T 1v43_A           39 FLVLLGPSGCGKTTTLRMIAGLE   61 (372)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            46899999999999999998853

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=96.83  E-value=0.00059  Score=52.67  Aligned_cols=22  Identities=23%  Similarity=0.581  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .++|+|++|||||||++.|.+.
T Consensus       177 ~i~ivG~sGsGKSTll~~l~~~  198 (361)
T 2gza_A          177 VIVVAGETGSGKTTLMKALMQE  198 (361)
T ss_dssp             CEEEEESSSSCHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            7999999999999999999884

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.83  E-value=0.0028  Score=48.44  Aligned_cols=21  Identities=29%  Similarity=0.588  Sum_probs=19.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 028986           36 LVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        36 i~i~G~~~sGKSsli~~l~~~   56 (200)
                      +++.|++|+||||+++.+.+.
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~~   59 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLES   59 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            999999999999999998873

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.82  E-value=0.00068  Score=49.57  Aligned_cols=26  Identities=27%  Similarity=0.346  Sum_probs=21.9

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcC
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .....|+++|++||||||+.+.|...
T Consensus        30 ~~~~~i~l~G~~GsGKSTla~~L~~~   55 (253)
T 2p5t_B           30 KQPIAILLGGQSGAGKTTIHRIKQKE   55 (253)
T ss_dssp             SSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHh
Confidence            34467999999999999999998763

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.82  E-value=0.00071  Score=49.53  Aligned_cols=21  Identities=14%  Similarity=0.360  Sum_probs=18.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHc
Q 028986           35 KLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~   55 (200)
                      -|+|+|++|||||||.+.|..
T Consensus         3 li~I~G~~GSGKSTla~~La~   23 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQ   23 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999999975

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=96.82  E-value=0.0011  Score=45.93  Aligned_cols=24  Identities=29%  Similarity=0.403  Sum_probs=20.9

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHc
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~   55 (200)
                      ....|+++|.+||||||+++.|..
T Consensus        12 ~~~~i~l~G~~GsGKsT~~~~L~~   35 (186)
T 2yvu_A           12 KGIVVWLTGLPGSGKTTIATRLAD   35 (186)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHH
Confidence            345789999999999999999876

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=96.82  E-value=0.00068  Score=51.05  Aligned_cols=84  Identities=15%  Similarity=0.047  Sum_probs=46.0

Q ss_pred             EEEEEeCCChhhhh------------hcccccccCccEEEEEEeCCCHHhH-HHHHHHHHHHHHcCCCCCeEEEEEeCCC
Q 028986           84 KFEIWDTAGQERYA------------ALAPLYYRGAAVAVVVYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKAD  150 (200)
Q Consensus        84 ~~~l~D~~g~~~~~------------~~~~~~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~~~~p~iiv~nK~D  150 (200)
                      .+.++|++|.....            ..........+.+++++|+...... +.+..    +.+..  +. .++++||.|
T Consensus       186 d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~~~~~~~~----~~~~~--~~-t~iivTh~d  258 (304)
T 1rj9_A          186 DLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKK----FHEAV--GL-TGVIVTKLD  258 (304)
T ss_dssp             SEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHH----HHHHH--CC-SEEEEECTT
T ss_pred             CEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHHHHHHHHH----HHHHc--CC-cEEEEECCc
Confidence            46689999942111            1111233457788889998865322 33222    22211  12 467889998


Q ss_pred             CCCCCcCCHHHHHHHHHHcCCeEEEecC
Q 028986          151 LHEKREVPAQDGIEYAEKNGMFFIETSA  178 (200)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~S~  178 (200)
                      ....    .-.+.......+.|+.++..
T Consensus       259 ~~a~----gg~~l~i~~~~~~pi~~ig~  282 (304)
T 1rj9_A          259 GTAK----GGVLIPIVRTLKVPIKFVGV  282 (304)
T ss_dssp             SSCC----CTTHHHHHHHHCCCEEEEEC
T ss_pred             cccc----ccHHHHHHHHHCCCeEEEeC
Confidence            6422    12334555667888777653

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=96.81  E-value=0.00083  Score=47.41  Aligned_cols=23  Identities=26%  Similarity=0.156  Sum_probs=20.6

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHc
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~   55 (200)
                      ...|+|.|.+||||||+++.|..
T Consensus        10 ~~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A           10 GKFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             SCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHH
Confidence            35799999999999999999975

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=96.81  E-value=0.00087  Score=47.01  Aligned_cols=23  Identities=17%  Similarity=0.289  Sum_probs=20.9

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcC
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      ..|+|.|.+||||||+++.|...
T Consensus         5 ~~I~l~G~~GsGKsT~~~~L~~~   27 (204)
T 2v54_A            5 ALIVFEGLDKSGKTTQCMNIMES   27 (204)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHT
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHH
Confidence            46999999999999999999874

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=96.80  E-value=0.00097  Score=46.92  Aligned_cols=23  Identities=26%  Similarity=0.317  Sum_probs=20.4

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHc
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~   55 (200)
                      ...|+|+|++|||||||++.|.+
T Consensus        22 ~~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A           22 RLVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             SEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45699999999999999999875

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=96.79  E-value=0.00056  Score=52.10  Aligned_cols=22  Identities=18%  Similarity=0.433  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .++|+|++|||||||++.+.+.
T Consensus       173 ~v~i~G~~GsGKTTll~~l~g~  194 (330)
T 2pt7_A          173 NVIVCGGTGSGKTTYIKSIMEF  194 (330)
T ss_dssp             CEEEEESTTSCHHHHHHHGGGG
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999885

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=96.79  E-value=0.00074  Score=52.33  Aligned_cols=22  Identities=23%  Similarity=0.440  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .++|+|++|||||||++.+.+.
T Consensus       138 ~i~ivG~~GsGKTTll~~l~~~  159 (372)
T 2ewv_A          138 LILVTGPTGSGKSTTIASMIDY  159 (372)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            5899999999999999999873

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=96.78  E-value=0.00094  Score=50.35  Aligned_cols=24  Identities=21%  Similarity=0.163  Sum_probs=21.1

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHcC
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      ...|+|+|++|||||||++.|.+.
T Consensus        80 g~iigI~G~~GsGKSTl~~~L~~~  103 (308)
T 1sq5_A           80 PYIISIAGSVAVGKSTTARVLQAL  103 (308)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHH
Confidence            456999999999999999999873

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=96.77  E-value=0.00089  Score=47.35  Aligned_cols=23  Identities=30%  Similarity=0.329  Sum_probs=20.6

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHc
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~   55 (200)
                      ...|+|.|.+||||||+++.|..
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A            9 GALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999975

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=96.76  E-value=0.00095  Score=48.78  Aligned_cols=22  Identities=23%  Similarity=0.353  Sum_probs=20.1

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHH
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFV   54 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~   54 (200)
                      ...|+|+|++||||||+++.|.
T Consensus        27 g~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           27 APVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            3479999999999999999998

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=96.76  E-value=0.0008  Score=50.60  Aligned_cols=22  Identities=18%  Similarity=0.412  Sum_probs=19.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHc
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~   55 (200)
                      -.++++|++||||||+++.|.+
T Consensus       101 ~vi~lvG~nGsGKTTll~~Lag  122 (302)
T 3b9q_A          101 AVIMIVGVNGGGKTTSLGKLAH  122 (302)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHH
Confidence            3688999999999999999976

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=96.76  E-value=0.00054  Score=52.54  Aligned_cols=23  Identities=26%  Similarity=0.405  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQ   57 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~   57 (200)
                      -++++|++|||||||++.+.+-.
T Consensus        28 ~~~llGpnGsGKSTLLr~iaGl~   50 (348)
T 3d31_A           28 YFVILGPTGAGKTLFLELIAGFH   50 (348)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCccHHHHHHHHHcCC
Confidence            47899999999999999999853

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=96.75  E-value=0.00077  Score=52.99  Aligned_cols=22  Identities=23%  Similarity=0.386  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      -++|+|++|||||||++.+.+.
T Consensus       169 ii~I~GpnGSGKTTlL~allg~  190 (418)
T 1p9r_A          169 IILVTGPTGSGKSTTLYAGLQE  190 (418)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHhh
Confidence            4899999999999999999874

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.75  E-value=0.00095  Score=46.35  Aligned_cols=21  Identities=19%  Similarity=0.316  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHc
Q 028986           35 KLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~   55 (200)
                      .|+|.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999976

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.75  E-value=0.00084  Score=46.86  Aligned_cols=23  Identities=22%  Similarity=0.417  Sum_probs=20.4

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHc
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~   55 (200)
                      ...|+|.|++||||||+.+.|..
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            34799999999999999999976

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=96.74  E-value=0.0041  Score=49.16  Aligned_cols=24  Identities=21%  Similarity=0.182  Sum_probs=19.6

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHH
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFV   54 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~   54 (200)
                      .+..-|.|+|+.++|||+|+|.|+
T Consensus        65 ~~v~vvsv~G~~~~gks~l~N~ll   88 (457)
T 4ido_A           65 KEVVAVSVAGAFRKGKSFLMDFML   88 (457)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHH
T ss_pred             CceEEEEEECCCCCchhHHHHHHH
Confidence            345566699999999999999665

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=96.74  E-value=0.00081  Score=51.26  Aligned_cols=22  Identities=23%  Similarity=0.474  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .++++|++|+|||||++.+.+.
T Consensus        53 ~~ll~Gp~G~GKTTLa~~ia~~   74 (334)
T 1in4_A           53 HVLLAGPPGLGKTTLAHIIASE   74 (334)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            5899999999999999999874

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=96.73  E-value=0.00087  Score=49.63  Aligned_cols=22  Identities=27%  Similarity=0.502  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .++++|++|+|||+|++.+.+.
T Consensus        75 gvll~Gp~GtGKTtl~~~i~~~   96 (278)
T 1iy2_A           75 GVLLVGPPGVGKTHLARAVAGE   96 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCcChHHHHHHHHHHH
Confidence            3899999999999999999884

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.73  E-value=0.00098  Score=48.13  Aligned_cols=24  Identities=25%  Similarity=0.371  Sum_probs=20.9

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHc
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~   55 (200)
                      ..+.|+|.|++||||||+.+.|..
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la~   31 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLAR   31 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999999875

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.73  E-value=0.00096  Score=47.52  Aligned_cols=22  Identities=27%  Similarity=0.437  Sum_probs=20.0

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHc
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~   55 (200)
                      +.|+|+|.+||||||+.+.|..
T Consensus         6 ~~I~l~G~~GsGKsT~a~~La~   27 (217)
T 3be4_A            6 HNLILIGAPGSGKGTQCEFIKK   27 (217)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999865

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.72  E-value=0.001  Score=45.57  Aligned_cols=22  Identities=18%  Similarity=0.353  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .+.|+|++|||||||+.+|...
T Consensus         6 ~i~i~G~sGsGKTTl~~~L~~~   27 (169)
T 1xjc_A            6 VWQVVGYKHSGKTTLMEKWVAA   27 (169)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            5889999999999999999873

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.72  E-value=0.0012  Score=45.65  Aligned_cols=22  Identities=32%  Similarity=0.493  Sum_probs=19.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHc
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~   55 (200)
                      ..|+|.|.+||||||+.+.|..
T Consensus         7 ~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            7 NVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999865

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.71  E-value=0.0012  Score=47.04  Aligned_cols=23  Identities=35%  Similarity=0.501  Sum_probs=20.7

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHc
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~   55 (200)
                      .+.|+|.|.+||||||+++.|..
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999976

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.71  E-value=0.00099  Score=46.01  Aligned_cols=21  Identities=48%  Similarity=0.624  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHc
Q 028986           35 KLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~   55 (200)
                      .|+|+|.+||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            4 KAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             SEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            599999999999999999865

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=96.70  E-value=0.00087  Score=52.19  Aligned_cols=22  Identities=41%  Similarity=0.684  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .++|+|++|||||||++.+.+-
T Consensus        49 ~~~llGpsGsGKSTLLr~iaGl   70 (390)
T 3gd7_A           49 RVGLLGRTGSGKSTLLSAFLRL   70 (390)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCChHHHHHHHHhCC
Confidence            4789999999999999999874

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.70  E-value=0.0011  Score=48.43  Aligned_cols=24  Identities=21%  Similarity=0.332  Sum_probs=21.3

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHc
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~   55 (200)
                      ..+.|+|.|++||||||+.+.|..
T Consensus        21 ~~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           21 EPFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999999866

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.70  E-value=0.001  Score=45.37  Aligned_cols=21  Identities=19%  Similarity=0.487  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHc
Q 028986           35 KLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~   55 (200)
                      .|+|.|.+||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999875

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=96.69  E-value=0.00085  Score=54.16  Aligned_cols=23  Identities=13%  Similarity=0.264  Sum_probs=20.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQ   57 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~   57 (200)
                      .++|+|++|||||||++.+.+..
T Consensus       262 ~i~I~GptGSGKTTlL~aL~~~i  284 (511)
T 2oap_1          262 SAIVVGETASGKTTTLNAIMMFI  284 (511)
T ss_dssp             CEEEEESTTSSHHHHHHHHGGGS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            59999999999999999998853

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.66  E-value=0.00039  Score=49.20  Aligned_cols=21  Identities=24%  Similarity=0.428  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHc
Q 028986           35 KLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~   55 (200)
                      -|+|.|++||||||+++.|..
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~   22 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSG   22 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            488999999999999999976

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=96.66  E-value=0.00091  Score=53.27  Aligned_cols=22  Identities=23%  Similarity=0.440  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .++|+|+.|||||||++.|.+-
T Consensus       140 ~v~IvGpnGsGKSTLlr~L~Gl  161 (460)
T 2npi_A          140 RVVIVGGSQTGKTSLSRTLCSY  161 (460)
T ss_dssp             CEEEEESTTSSHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhCc
Confidence            6999999999999999999884

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=96.66  E-value=0.0011  Score=47.39  Aligned_cols=21  Identities=33%  Similarity=0.681  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHc
Q 028986           35 KLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~   55 (200)
                      -++|+|++|+|||||++.+..
T Consensus        25 ~~~i~G~~GsGKTtl~~~l~~   45 (235)
T 2w0m_A           25 FIALTGEPGTGKTIFSLHFIA   45 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            478899999999999999985

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=96.66  E-value=0.0011  Score=45.68  Aligned_cols=22  Identities=27%  Similarity=0.237  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      -.+|+|+.|+|||||++++...
T Consensus        28 ~~~i~G~NGsGKStll~ai~~~   49 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILFV   49 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHH
Confidence            4679999999999999998763

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.64  E-value=0.0013  Score=44.73  Aligned_cols=21  Identities=38%  Similarity=0.499  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHc
Q 028986           35 KLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~   55 (200)
                      +|+|.|.+||||||+.+.|..
T Consensus         9 ~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            9 HLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             EEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            688999999999999999865

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=96.64  E-value=0.00054  Score=52.65  Aligned_cols=23  Identities=26%  Similarity=0.413  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQ   57 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~   57 (200)
                      -++++|++|||||||++.+.+-.
T Consensus        33 ~~~llGpnGsGKSTLLr~iaGl~   55 (353)
T 1oxx_K           33 RFGILGPSGAGKTTFMRIIAGLD   55 (353)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47899999999999999999853

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.62  E-value=0.0009  Score=45.91  Aligned_cols=23  Identities=43%  Similarity=0.625  Sum_probs=20.2

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcC
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      -.++|.|++|+|||+|++.+...
T Consensus        44 ~~vll~G~~G~GKT~la~~~~~~   66 (187)
T 2p65_A           44 NNPILLGDPGVGKTAIVEGLAIK   66 (187)
T ss_dssp             CEEEEESCGGGCHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999988763

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.62  E-value=0.0014  Score=48.05  Aligned_cols=22  Identities=32%  Similarity=0.540  Sum_probs=19.9

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHc
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~   55 (200)
                      ..|+|.|.+||||||+++.|..
T Consensus         5 ~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            5 MLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHH
Confidence            3689999999999999999976

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.62  E-value=0.0013  Score=48.08  Aligned_cols=22  Identities=18%  Similarity=0.445  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .+++.|++|+|||+|++.+.+.
T Consensus        47 ~vll~G~~GtGKT~la~~la~~   68 (257)
T 1lv7_A           47 GVLMVGPPGTGKTLLAKAIAGE   68 (257)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECcCCCCHHHHHHHHHHH
Confidence            5999999999999999999874

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=96.62  E-value=0.0015  Score=44.90  Aligned_cols=22  Identities=27%  Similarity=0.442  Sum_probs=19.9

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHc
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~   55 (200)
                      ..|+++|.+||||||+++.|..
T Consensus         6 ~~i~l~G~~GsGKST~~~~L~~   27 (179)
T 2pez_A            6 CTVWLTGLSGAGKTTVSMALEE   27 (179)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4688999999999999999976

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.62  E-value=0.00077  Score=46.42  Aligned_cols=22  Identities=23%  Similarity=0.259  Sum_probs=15.9

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHc
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~   55 (200)
                      ..|+|.|.+||||||+.+.|..
T Consensus         6 ~~I~l~G~~GsGKST~a~~La~   27 (183)
T 2vli_A            6 PIIWINGPFGVGKTHTAHTLHE   27 (183)
T ss_dssp             CEEEEECCC----CHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999975

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.57  E-value=0.0015  Score=45.85  Aligned_cols=23  Identities=30%  Similarity=0.446  Sum_probs=20.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcC
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      -.+++.|++|+|||+|++.+...
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~   77 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANE   77 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999998874

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=96.57  E-value=0.00086  Score=48.26  Aligned_cols=24  Identities=21%  Similarity=0.401  Sum_probs=21.1

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHcC
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      ..-|+|.|+.|||||||++.|.+.
T Consensus        20 g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           20 PFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhc
Confidence            346899999999999999999874

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.57  E-value=0.0014  Score=46.93  Aligned_cols=24  Identities=13%  Similarity=0.181  Sum_probs=20.8

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHcC
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .-.++|.|++|+|||+|++.+...
T Consensus        52 ~~~~ll~G~~G~GKT~la~~l~~~   75 (242)
T 3bos_A           52 VQAIYLWGPVKSGRTHLIHAACAR   75 (242)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            347999999999999999998763

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=96.56  E-value=0.0013  Score=50.61  Aligned_cols=22  Identities=18%  Similarity=0.412  Sum_probs=19.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHc
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~   55 (200)
                      -.|+++|++||||||+++.|.+
T Consensus       158 ~vi~lvG~nGsGKTTll~~Lag  179 (359)
T 2og2_A          158 AVIMIVGVNGGGKTTSLGKLAH  179 (359)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEEcCCCChHHHHHHHHHh
Confidence            3688999999999999999976

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=96.54  E-value=0.0014  Score=47.87  Aligned_cols=22  Identities=27%  Similarity=0.394  Sum_probs=20.0

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHc
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~   55 (200)
                      -.|+|+|++||||||+.+.|..
T Consensus        49 ~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           49 RSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999975

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=96.52  E-value=0.0016  Score=43.67  Aligned_cols=20  Identities=25%  Similarity=0.522  Sum_probs=17.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHc
Q 028986           36 LVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        36 i~i~G~~~sGKSsli~~l~~   55 (200)
                      .+|+|+.|+|||+|+.++..
T Consensus        26 ~~I~G~NGsGKStil~Ai~~   45 (149)
T 1f2t_A           26 NLIIGQNGSGKSSLLDAILV   45 (149)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999863

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=96.50  E-value=0.0015  Score=52.32  Aligned_cols=85  Identities=13%  Similarity=0.129  Sum_probs=46.1

Q ss_pred             EEEEEEeCCChhh----hhh----c---cccc-ccCccEEEEEEeCCCHH-hHHHHHHHHHHHHHcCCCCCeEEEEEeCC
Q 028986           83 VKFEIWDTAGQER----YAA----L---APLY-YRGAAVAVVVYDITSPD-SFNKAQYWVKELQKHGSPDIVMALVGNKA  149 (200)
Q Consensus        83 ~~~~l~D~~g~~~----~~~----~---~~~~-~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~iiv~nK~  149 (200)
                      +.+.++||+|...    +..    .   ...+ ....+-+++++|+.... .+..++.    +....  ++ ..+|+||.
T Consensus       376 ~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al~~ak~----f~~~~--~i-tgvIlTKL  448 (503)
T 2yhs_A          376 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL----FHEAV--GL-TGITLTKL  448 (503)
T ss_dssp             CSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHHHHHH----HHHHT--CC-SEEEEECG
T ss_pred             CCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHHHHHHH----HHhhc--CC-CEEEEEcC
Confidence            3578999999421    111    1   1111 12356788999987652 2333222    22221  22 35778999


Q ss_pred             CCCCCCcCCHHHHHHHHHHcCCeEEEecC
Q 028986          150 DLHEKREVPAQDGIEYAEKNGMFFIETSA  178 (200)
Q Consensus       150 D~~~~~~~~~~~~~~~~~~~~~~~~~~S~  178 (200)
                      |...  .  .-.+..++...+.++.++..
T Consensus       449 D~ta--k--gG~~lsi~~~~~~PI~fig~  473 (503)
T 2yhs_A          449 DGTA--K--GGVIFSVADQFGIPIRYIGV  473 (503)
T ss_dssp             GGCS--C--CTHHHHHHHHHCCCEEEEEC
T ss_pred             CCcc--c--ccHHHHHHHHHCCCEEEEec
Confidence            9532  1  23456666677888777544

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.50  E-value=0.0014  Score=48.94  Aligned_cols=22  Identities=27%  Similarity=0.359  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      -++|+|++|+|||||++.+.+.
T Consensus        37 ~~~i~G~~G~GKTTl~~~ia~~   58 (296)
T 1cr0_A           37 VIMVTSGSGMGKSTFVRQQALQ   58 (296)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            4789999999999999998874

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=96.49  E-value=0.0025  Score=45.86  Aligned_cols=25  Identities=16%  Similarity=0.349  Sum_probs=21.5

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHcC
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      ...-|+|.|++||||||+++.|...
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~~~   49 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVYHR   49 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            3456899999999999999999874

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=96.48  E-value=0.0016  Score=49.98  Aligned_cols=23  Identities=30%  Similarity=0.544  Sum_probs=21.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQ   57 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~   57 (200)
                      +++|+|++|+|||||++.+.+..
T Consensus        73 ~~gIiG~nGaGKTTLl~~I~g~~   95 (347)
T 2obl_A           73 RIGIFAGSGVGKSTLLGMICNGA   95 (347)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68899999999999999999963

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=96.47  E-value=0.0012  Score=50.08  Aligned_cols=23  Identities=26%  Similarity=0.393  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQ   57 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~   57 (200)
                      -++|+|+.|||||||++.|.+..
T Consensus         6 v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            6 VTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHSC
T ss_pred             EEEEEecCCCCHHHHHHHHHhhc
Confidence            46788999999999999999753

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=96.47  E-value=0.0017  Score=45.98  Aligned_cols=21  Identities=19%  Similarity=0.191  Sum_probs=19.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHc
Q 028986           35 KLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~   55 (200)
                      -++|+|++|+|||||+..+..
T Consensus        22 ~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           22 LTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999999987

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=96.46  E-value=0.0013  Score=46.36  Aligned_cols=21  Identities=33%  Similarity=0.556  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHc
Q 028986           35 KLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~   55 (200)
                      .+++.|+||+|||+++.++..
T Consensus        60 ~ili~GPPGtGKTt~a~ala~   80 (212)
T 1tue_A           60 CLVFCGPANTGKSYFGMSFIH   80 (212)
T ss_dssp             EEEEESCGGGCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            599999999999999988876

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.46  E-value=0.002  Score=42.79  Aligned_cols=23  Identities=17%  Similarity=0.212  Sum_probs=20.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcC
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      ..|++.|++|+|||++++.+...
T Consensus        25 ~~vll~G~~GtGKt~lA~~i~~~   47 (145)
T 3n70_A           25 IAVWLYGAPGTGRMTGARYLHQF   47 (145)
T ss_dssp             SCEEEESSTTSSHHHHHHHHHHS
T ss_pred             CCEEEECCCCCCHHHHHHHHHHh
Confidence            46999999999999999999874

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.46  E-value=0.0017  Score=46.69  Aligned_cols=22  Identities=18%  Similarity=0.226  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      -++|+|++|+|||||+..+...
T Consensus        26 ~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           26 ITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            4789999999999999999884

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.46  E-value=0.0022  Score=45.39  Aligned_cols=23  Identities=26%  Similarity=0.369  Sum_probs=20.2

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHc
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~   55 (200)
                      ...|+|+|.+||||||+++.|..
T Consensus        25 ~~~i~~~G~~GsGKsT~~~~l~~   47 (211)
T 1m7g_A           25 GLTIWLTGLSASGKSTLAVELEH   47 (211)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            34688999999999999999876

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=96.46  E-value=0.0018  Score=48.42  Aligned_cols=24  Identities=29%  Similarity=0.302  Sum_probs=20.7

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHcC
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      +..+++.|+||+|||+|++++...
T Consensus        36 p~~lLl~GppGtGKT~la~aiA~~   59 (293)
T 3t15_A           36 PLILGIWGGKGQGKSFQCELVFRK   59 (293)
T ss_dssp             CSEEEEEECTTSCHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            446788899999999999999874

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=96.40  E-value=0.002  Score=52.39  Aligned_cols=23  Identities=26%  Similarity=0.333  Sum_probs=20.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQ   57 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~   57 (200)
                      .++++|++|+|||||++.+.+..
T Consensus        49 ~~~LvG~NGaGKSTLlk~l~Gl~   71 (538)
T 1yqt_A           49 VVGIVGPNGTGKSTAVKILAGQL   71 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999999854

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=96.37  E-value=0.0021  Score=47.55  Aligned_cols=23  Identities=22%  Similarity=0.406  Sum_probs=20.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcC
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      -.+++.|++|+|||+|++++...
T Consensus        52 ~~~ll~G~~GtGKT~la~~la~~   74 (285)
T 3h4m_A           52 KGILLYGPPGTGKTLLAKAVATE   74 (285)
T ss_dssp             SEEEEESSSSSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            36999999999999999999874

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=96.37  E-value=0.002  Score=51.55  Aligned_cols=21  Identities=38%  Similarity=0.536  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHc
Q 028986           35 KLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~   55 (200)
                      .++|+|++|||||||++.+.+
T Consensus        31 ~~~liG~nGsGKSTLl~~l~G   51 (483)
T 3euj_A           31 VTTLSGGNGAGKSTTMAGFVT   51 (483)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHhc
Confidence            478999999999999999976

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=96.37  E-value=0.002  Score=49.97  Aligned_cols=21  Identities=14%  Similarity=0.291  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHc
Q 028986           35 KLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~   55 (200)
                      .++|+|++|+|||||++.+.+
T Consensus       171 ~i~l~G~~GsGKSTl~~~l~~  191 (377)
T 1svm_A          171 YWLFKGPIDSGKTTLAAALLE  191 (377)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            688999999999999999986

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.36  E-value=0.0028  Score=44.32  Aligned_cols=26  Identities=19%  Similarity=0.266  Sum_probs=22.7

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcC
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .....|.++|.+||||||+.+.|...
T Consensus        10 ~~~~iIgltG~~GSGKSTva~~L~~~   35 (192)
T 2grj_A           10 HHHMVIGVTGKIGTGKSTVCEILKNK   35 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHh
Confidence            45678999999999999999998763

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=96.36  E-value=0.0022  Score=47.83  Aligned_cols=24  Identities=25%  Similarity=0.393  Sum_probs=21.2

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHcC
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .-.+++.|++|+|||+|++.+...
T Consensus        54 ~~~vll~Gp~GtGKT~la~~la~~   77 (297)
T 3b9p_A           54 AKGLLLFGPPGNGKTLLARAVATE   77 (297)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHH
Confidence            347999999999999999999874

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=96.35  E-value=0.0025  Score=47.58  Aligned_cols=22  Identities=27%  Similarity=0.443  Sum_probs=19.9

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHc
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~   55 (200)
                      ..|+|.|++||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3589999999999999999986

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=96.35  E-value=0.0027  Score=47.53  Aligned_cols=24  Identities=21%  Similarity=0.551  Sum_probs=20.2

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHc
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~   55 (200)
                      ....+++.|++|+|||+|++.+..
T Consensus        66 ~~~~vll~G~~GtGKT~la~~la~   89 (309)
T 3syl_A           66 PTLHMSFTGNPGTGKTTVALKMAG   89 (309)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            344699999999999999987665

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.32  E-value=0.0027  Score=46.28  Aligned_cols=23  Identities=26%  Similarity=0.406  Sum_probs=20.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcC
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      -.|++.|++|+|||+|++.+...
T Consensus        40 ~~vll~G~~GtGKT~la~~la~~   62 (262)
T 2qz4_A           40 KGALLLGPPGCGKTLLAKAVATE   62 (262)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            45899999999999999999873

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.31  E-value=0.0023  Score=45.62  Aligned_cols=21  Identities=29%  Similarity=0.534  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHc
Q 028986           35 KLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~   55 (200)
                      .++|.|++|+|||+|++.+..
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~   67 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAK   67 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999999876

>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}

Probab=96.30  E-value=0.0023  Score=45.83  Aligned_cols=25  Identities=4%  Similarity=-0.052  Sum_probs=19.6

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHcC
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      +++=|++.|+++.||++|+++|++.
T Consensus        28 nkilvl~~~~~~~~~~~~~~~lf~~   52 (233)
T 3uc9_A           28 NKILVLSDHPHNFLKTQFLQDLFHC   52 (233)
T ss_dssp             CEEEEEEEGGGHHHHHHHHHHHHCC
T ss_pred             CceEEEecCcccccHHHHHHHHhcc
Confidence            3433444499999999999999996

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=96.30  E-value=0.0023  Score=50.67  Aligned_cols=23  Identities=35%  Similarity=0.492  Sum_probs=20.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQ   57 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~   57 (200)
                      +++|+|++|+|||||++.+.+..
T Consensus       159 ~~~IvG~sGsGKSTLl~~Iag~~  181 (438)
T 2dpy_A          159 RMGLFAGSGVGKSVLLGMMARYT  181 (438)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhccc
Confidence            68999999999999999999853

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=96.28  E-value=0.0021  Score=52.20  Aligned_cols=23  Identities=30%  Similarity=0.465  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQ   57 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~   57 (200)
                      -++++|+.|+|||||++.+.+..
T Consensus        27 i~gLiGpNGaGKSTLlkiL~Gl~   49 (538)
T 3ozx_A           27 ILGVLGKNGVGKTTVLKILAGEI   49 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            47899999999999999998854

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=96.26  E-value=0.0026  Score=47.66  Aligned_cols=22  Identities=18%  Similarity=0.425  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .|++.|++|+|||+|++.+...
T Consensus        51 ~vLL~Gp~GtGKT~la~ala~~   72 (301)
T 3cf0_A           51 GVLFYGPPGCGKTLLAKAIANE   72 (301)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCcCHHHHHHHHHHH
Confidence            5999999999999999999874

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=96.26  E-value=0.0022  Score=52.69  Aligned_cols=22  Identities=41%  Similarity=0.511  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .++++|++|||||||++.+.+-
T Consensus       371 ~~~ivG~sGsGKSTLl~~l~g~  392 (582)
T 3b60_A          371 TVALVGRSGSGKSTIASLITRF  392 (582)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTT
T ss_pred             EEEEECCCCCCHHHHHHHHhhc
Confidence            5889999999999999999884

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=96.25  E-value=0.0025  Score=52.33  Aligned_cols=22  Identities=45%  Similarity=0.588  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .++++|++|||||||++.+.+-
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~  392 (582)
T 3b5x_A          371 TVALVGRSGSGKSTIANLFTRF  392 (582)
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5889999999999999999885

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=96.24  E-value=0.0039  Score=45.90  Aligned_cols=26  Identities=19%  Similarity=0.323  Sum_probs=22.3

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcC
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .....+++.|++|+|||+|++.+...
T Consensus        62 ~~~~~vLl~G~~GtGKT~la~~ia~~   87 (272)
T 1d2n_A           62 TPLVSVLLEGPPHSGKTALAAKIAEE   87 (272)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            34557999999999999999999874

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=96.24  E-value=0.0026  Score=52.45  Aligned_cols=23  Identities=35%  Similarity=0.475  Sum_probs=20.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQ   57 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~   57 (200)
                      .++|+|++|+|||||++.|.+..
T Consensus       105 i~~LvGpNGaGKSTLLkiL~Gll  127 (608)
T 3j16_B          105 VLGLVGTNGIGKSTALKILAGKQ  127 (608)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            58999999999999999999854

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=96.22  E-value=0.003  Score=44.32  Aligned_cols=23  Identities=43%  Similarity=0.697  Sum_probs=20.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcC
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      ..|+|+|++|+|||+|+..|...
T Consensus        35 ~~ilI~GpsGsGKStLA~~La~~   57 (205)
T 2qmh_A           35 LGVLITGDSGVGKSETALELVQR   57 (205)
T ss_dssp             EEEEEECCCTTTTHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHh
Confidence            46899999999999999999875

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=96.20  E-value=0.0042  Score=46.48  Aligned_cols=23  Identities=26%  Similarity=0.483  Sum_probs=20.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcC
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      -.+++.|++|+|||++++.+...
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~   70 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAAT   70 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHHH
Confidence            36999999999999999998874

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=96.18  E-value=0.0028  Score=47.91  Aligned_cols=23  Identities=17%  Similarity=0.319  Sum_probs=20.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcC
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      -.++|.|++|+|||+|++.+.+.
T Consensus        38 ~~lll~G~~GtGKT~la~~i~~~   60 (324)
T 1l8q_A           38 NPIFIYGSVGTGKTHLLQAAGNE   60 (324)
T ss_dssp             SSEEEECSSSSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            35999999999999999999873

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=96.18  E-value=0.003  Score=48.78  Aligned_cols=19  Identities=32%  Similarity=0.461  Sum_probs=17.4

Q ss_pred             EEEEcCCCCcHHHHHHHHH
Q 028986           36 LVLLGDSGVGKSCIVLRFV   54 (200)
Q Consensus        36 i~i~G~~~sGKSsli~~l~   54 (200)
                      .+|+|+.|+|||||+++++
T Consensus        26 ~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           26 TVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            5589999999999999987

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=96.18  E-value=0.0027  Score=46.96  Aligned_cols=21  Identities=29%  Similarity=0.439  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHc
Q 028986           35 KLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~   55 (200)
                      -++|+|++|+|||||+..+..
T Consensus        32 i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           32 VGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            478999999999999999875

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=96.15  E-value=0.0037  Score=45.04  Aligned_cols=24  Identities=17%  Similarity=0.340  Sum_probs=20.9

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHc
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~   55 (200)
                      ....|+|+|++||||||+.+.|..
T Consensus        15 ~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           15 KTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            445799999999999999999875

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=96.13  E-value=0.0034  Score=51.03  Aligned_cols=23  Identities=22%  Similarity=0.433  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQ   57 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~   57 (200)
                      .++|+|+.|+|||||++.+.+..
T Consensus       314 ~~~i~G~NGsGKSTLlk~l~Gl~  336 (538)
T 1yqt_A          314 VIGIVGPNGIGKTTFVKMLAGVE  336 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999854

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=96.12  E-value=0.0071  Score=42.26  Aligned_cols=85  Identities=13%  Similarity=0.020  Sum_probs=54.8

Q ss_pred             EEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcC--CCCCeEEEEEeCCCCCCCCcCCHH
Q 028986           83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHG--SPDIVMALVGNKADLHEKREVPAQ  160 (200)
Q Consensus        83 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~p~iiv~nK~D~~~~~~~~~~  160 (200)
                      +.+.++|+|+..  .......+..+|.+++++..+...  ..+..+++.+.+..  ....++.+|+|+.|....   ...
T Consensus        76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~---~~~  148 (206)
T 4dzz_A           76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMAT---MLN  148 (206)
T ss_dssp             SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEE---EEH
T ss_pred             CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCch---HHH
Confidence            578999999854  223344566689999999887654  55666666666543  345677999999995321   123


Q ss_pred             HHHHHHHHcCCeEE
Q 028986          161 DGIEYAEKNGMFFI  174 (200)
Q Consensus       161 ~~~~~~~~~~~~~~  174 (200)
                      +..+..+.++.+++
T Consensus       149 ~~~~~l~~~~~~vl  162 (206)
T 4dzz_A          149 VLKESIKDTGVKAF  162 (206)
T ss_dssp             HHHHHHHHHTCCBC
T ss_pred             HHHHHHHHcCCcee
Confidence            44555555555444

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=96.12  E-value=0.0038  Score=43.79  Aligned_cols=21  Identities=29%  Similarity=0.374  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHc
Q 028986           35 KLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~   55 (200)
                      .|.|.|++||||||+.+.|..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAA   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999865

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=96.09  E-value=0.003  Score=51.33  Aligned_cols=23  Identities=26%  Similarity=0.432  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQ   57 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~   57 (200)
                      .++|+|+.|||||||++.+.+..
T Consensus       296 i~~i~G~nGsGKSTLl~~l~Gl~  318 (538)
T 3ozx_A          296 IIGILGPNGIGKTTFARILVGEI  318 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999853

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=96.09  E-value=0.0032  Score=51.94  Aligned_cols=23  Identities=22%  Similarity=0.323  Sum_probs=20.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQ   57 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~   57 (200)
                      .++|+|++|+|||||++.+.+..
T Consensus       119 ~~~LiG~NGsGKSTLlkiL~Gll  141 (607)
T 3bk7_A          119 VVGIVGPNGTGKTTAVKILAGQL  141 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCChHHHHHHHHhCCC
Confidence            58999999999999999998854

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=96.09  E-value=0.0034  Score=51.77  Aligned_cols=23  Identities=22%  Similarity=0.433  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQ   57 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~   57 (200)
                      .++|+|+.|+|||||++.+.+..
T Consensus       384 i~~i~G~NGsGKSTLlk~l~Gl~  406 (607)
T 3bk7_A          384 VIGIVGPNGIGKTTFVKMLAGVE  406 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999999854

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=96.08  E-value=0.0036  Score=46.75  Aligned_cols=23  Identities=30%  Similarity=0.609  Sum_probs=20.6

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcC
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      ..+++.|++|+|||+|++.+...
T Consensus        51 ~~vll~G~~GtGKT~la~~la~~   73 (310)
T 1ofh_A           51 KNILMIGPTGVGKTEIARRLAKL   73 (310)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            46999999999999999999863

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=96.08  E-value=0.0042  Score=44.69  Aligned_cols=25  Identities=28%  Similarity=0.456  Sum_probs=20.4

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHc
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~   55 (200)
                      ...+++.|+|++||||||+...|..
T Consensus         6 ~~~~~~~~~G~pGsGKsT~a~~L~~   30 (230)
T 3gmt_A            6 HHHMRLILLGAPGAGKGTQANFIKE   30 (230)
T ss_dssp             ---CEEEEECCTTSCHHHHHHHHHH
T ss_pred             ccccceeeECCCCCCHHHHHHHHHH
Confidence            4567899999999999999998865

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=96.08  E-value=0.008  Score=47.24  Aligned_cols=24  Identities=25%  Similarity=0.349  Sum_probs=20.5

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHcC
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      ..-|+|+|++||||||+++.|...
T Consensus       258 ~~lIil~G~pGSGKSTla~~L~~~  281 (416)
T 3zvl_A          258 PEVVVAVGFPGAGKSTFIQEHLVS  281 (416)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHTGG
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHh
Confidence            345788999999999999999763

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=96.06  E-value=0.0023  Score=46.97  Aligned_cols=26  Identities=23%  Similarity=0.190  Sum_probs=21.6

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcC
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .+...|+|.|..||||||+++.|...
T Consensus        22 ~~~~~I~ieG~~GsGKST~~~~L~~~   47 (263)
T 1p5z_B           22 TRIKKISIEGNIAAGKSTFVNILKQL   47 (263)
T ss_dssp             -CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHh
Confidence            34567999999999999999988764

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.05  E-value=0.0037  Score=49.25  Aligned_cols=22  Identities=27%  Similarity=0.519  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .|++.||||+|||+|++++.+.
T Consensus       208 GiLL~GPPGtGKT~lakAiA~~  229 (428)
T 4b4t_K          208 GVLLYGPPGTGKTMLVKAVANS  229 (428)
T ss_dssp             EEEEESCTTTTHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5999999999999999999873

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.05  E-value=0.0034  Score=48.24  Aligned_cols=23  Identities=22%  Similarity=0.416  Sum_probs=20.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcC
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      -.++|.|++|+|||+|++.+...
T Consensus        46 ~~vli~G~~G~GKTtl~~~l~~~   68 (386)
T 2qby_A           46 NNIFIYGLTGTGKTAVVKFVLSK   68 (386)
T ss_dssp             CCEEEEECTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999999873

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=96.03  E-value=0.0025  Score=52.47  Aligned_cols=22  Identities=41%  Similarity=0.607  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .++++|++|||||||++.+.+-
T Consensus       383 ~~~ivG~sGsGKSTll~~l~g~  404 (598)
T 3qf4_B          383 KVALVGPTGSGKTTIVNLLMRF  404 (598)
T ss_dssp             EEEEECCTTSSTTHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            6899999999999999998874

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=96.02  E-value=0.004  Score=47.10  Aligned_cols=24  Identities=25%  Similarity=0.419  Sum_probs=21.2

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHcC
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      ...|++.|++|+|||+|++++...
T Consensus        51 ~~~vLl~GppGtGKT~la~aia~~   74 (322)
T 3eie_A           51 TSGILLYGPPGTGKSYLAKAVATE   74 (322)
T ss_dssp             CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            347999999999999999999874

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=96.02  E-value=0.0041  Score=47.15  Aligned_cols=23  Identities=26%  Similarity=0.455  Sum_probs=20.9

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcC
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      -.|++.|++|+|||+|++++...
T Consensus        46 ~~iLL~GppGtGKT~la~ala~~   68 (322)
T 1xwi_A           46 RGILLFGPPGTGKSYLAKAVATE   68 (322)
T ss_dssp             SEEEEESSSSSCHHHHHHHHHHH
T ss_pred             ceEEEECCCCccHHHHHHHHHHH
Confidence            46999999999999999999874

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=96.00  E-value=0.057  Score=40.59  Aligned_cols=21  Identities=14%  Similarity=0.327  Sum_probs=17.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 028986           36 LVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        36 i~i~G~~~sGKSsli~~l~~~   56 (200)
                      +++.|++|+|||++++.+...
T Consensus        51 ~L~~G~~G~GKT~la~~la~~   71 (324)
T 3u61_B           51 ILHSPSPGTGKTTVAKALCHD   71 (324)
T ss_dssp             EEECSSTTSSHHHHHHHHHHH
T ss_pred             EEeeCcCCCCHHHHHHHHHHH
Confidence            455577999999999999874

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=96.00  E-value=0.0056  Score=46.91  Aligned_cols=23  Identities=39%  Similarity=0.664  Sum_probs=20.0

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHc
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~   55 (200)
                      ..+|+++|++|+||||+.+.|..
T Consensus        24 ~~~i~l~G~~G~GKTTl~~~la~   46 (359)
T 2ga8_A           24 RVCVILVGSPGSGKSTIAEELCQ   46 (359)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCCcHHHHHHHHHH
Confidence            35799999999999999987765

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.99  E-value=0.0046  Score=48.76  Aligned_cols=24  Identities=17%  Similarity=0.282  Sum_probs=21.4

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHcC
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      +-.|++.||||+|||+|++++.+.
T Consensus       215 prGvLLyGPPGTGKTllAkAiA~e  238 (434)
T 4b4t_M          215 PKGALMYGPPGTGKTLLARACAAQ  238 (434)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCeeEEECcCCCCHHHHHHHHHHH
Confidence            347999999999999999999884

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=95.99  E-value=0.0043  Score=47.84  Aligned_cols=22  Identities=27%  Similarity=0.474  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .++|.|++|+|||+|++.+.+.
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~   67 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWEL   67 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999999874

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.97  E-value=0.0041  Score=47.40  Aligned_cols=22  Identities=27%  Similarity=0.643  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      ++++.|++|+||||+++.+.+.
T Consensus        48 ~~ll~Gp~G~GKTtla~~la~~   69 (340)
T 1sxj_C           48 HLLFYGPPGTGKTSTIVALARE   69 (340)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999999874

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=95.96  E-value=0.004  Score=46.65  Aligned_cols=86  Identities=13%  Similarity=0.031  Sum_probs=46.7

Q ss_pred             EEEEEEeCCChhhhhh----ccccccc--CccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCc
Q 028986           83 VKFEIWDTAGQERYAA----LAPLYYR--GAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKRE  156 (200)
Q Consensus        83 ~~~~l~D~~g~~~~~~----~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~  156 (200)
                      ..+.++||+|......    .....+.  ..+.+++|+|++..  ...+..+...+.   ..+. .-+|+||.|....  
T Consensus       183 ~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~---~l~~-~giVltk~D~~~~--  254 (296)
T 2px0_A          183 YDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFS---SVPV-NQYIFTKIDETTS--  254 (296)
T ss_dssp             SSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTS---SSCC-CEEEEECTTTCSC--
T ss_pred             CCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHh---cCCC-CEEEEeCCCcccc--
Confidence            4789999999532211    0111222  36788899988754  223333322222   1111 3456799996432  


Q ss_pred             CCHHHHHHHHHHcCCeEEEecC
Q 028986          157 VPAQDGIEYAEKNGMFFIETSA  178 (200)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~S~  178 (200)
                        ...+...+...+.++..+..
T Consensus       255 --~g~~~~~~~~~~~pi~~i~~  274 (296)
T 2px0_A          255 --LGSVFNILAESKIGVGFMTN  274 (296)
T ss_dssp             --CHHHHHHHHTCSCCCSEECC
T ss_pred             --hhHHHHHHHHHCcCEEEEEC
Confidence              23556666777887666543

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=95.96  E-value=0.0045  Score=46.89  Aligned_cols=21  Identities=19%  Similarity=0.513  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHc
Q 028986           35 KLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~   55 (200)
                      .|+|+|++|||||||...|..
T Consensus         7 ~i~i~GptGsGKTtla~~La~   27 (323)
T 3crm_A            7 AIFLMGPTAAGKTDLAMALAD   27 (323)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999976

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=95.95  E-value=0.0044  Score=44.61  Aligned_cols=21  Identities=29%  Similarity=0.553  Sum_probs=18.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHc
Q 028986           35 KLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~   55 (200)
                      -++|+|++|+|||+|+..+..
T Consensus        25 ~~~i~G~~GsGKTtl~~~~~~   45 (247)
T 2dr3_A           25 VVLLSGGPGTGKTIFSQQFLW   45 (247)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999877754

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=95.93  E-value=0.0047  Score=46.50  Aligned_cols=87  Identities=16%  Similarity=0.138  Sum_probs=48.7

Q ss_pred             EEEEEEeCCChhhhh--------h---cccc-cccCccEEEEEEeCCCHH-hHHHHHHHHHHHHHcCCCCCeEEEEEeCC
Q 028986           83 VKFEIWDTAGQERYA--------A---LAPL-YYRGAAVAVVVYDITSPD-SFNKAQYWVKELQKHGSPDIVMALVGNKA  149 (200)
Q Consensus        83 ~~~~l~D~~g~~~~~--------~---~~~~-~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~iiv~nK~  149 (200)
                      ..+.++|+||.....        .   .... .-...+.+++|+|+.... .+..+..    +.+.  .++ .-+|+||.
T Consensus       187 ~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~~~~l~~a~~----~~~~--~~i-~gvVlTk~  259 (306)
T 1vma_A          187 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQAKI----FKEA--VNV-TGIILTKL  259 (306)
T ss_dssp             CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHHHHHHHHH----HHHH--SCC-CEEEEECG
T ss_pred             CCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHHHHH----HHhc--CCC-CEEEEeCC
Confidence            368999999942111        1   1111 123478899999987442 2222222    2222  122 34667999


Q ss_pred             CCCCCCcCCHHHHHHHHHHcCCeEEEecCCC
Q 028986          150 DLHEKREVPAQDGIEYAEKNGMFFIETSAKT  180 (200)
Q Consensus       150 D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~  180 (200)
                      |....    .-.+.......+.|+.++..-.
T Consensus       260 D~~~~----gG~~l~~~~~~~~Pi~~i~~Ge  286 (306)
T 1vma_A          260 DGTAK----GGITLAIARELGIPIKFIGVGE  286 (306)
T ss_dssp             GGCSC----TTHHHHHHHHHCCCEEEEECSS
T ss_pred             CCccc----hHHHHHHHHHHCCCEEEEeCCC
Confidence            96322    2246677777888887776533

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=95.93  E-value=0.0022  Score=52.57  Aligned_cols=22  Identities=32%  Similarity=0.392  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .++++|++|||||||++.+.+.
T Consensus       369 ~~~ivG~sGsGKSTll~~l~g~  390 (578)
T 4a82_A          369 TVAFVGMSGGGKSTLINLIPRF  390 (578)
T ss_dssp             EEEEECSTTSSHHHHHTTTTTS
T ss_pred             EEEEECCCCChHHHHHHHHhcC
Confidence            5789999999999999988874

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=95.92  E-value=0.0045  Score=51.04  Aligned_cols=22  Identities=27%  Similarity=0.640  Sum_probs=20.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCC
Q 028986           36 LVLLGDSGVGKSCIVLRFVRGQ   57 (200)
Q Consensus        36 i~i~G~~~sGKSsli~~l~~~~   57 (200)
                      ++|+|+.|+|||||++.+.+..
T Consensus       381 v~iiG~NGsGKSTLlk~l~Gl~  402 (608)
T 3j16_B          381 LVMMGENGTGKTTLIKLLAGAL  402 (608)
T ss_dssp             EEEESCTTSSHHHHHHHHHTSS
T ss_pred             EEEECCCCCcHHHHHHHHhcCC
Confidence            6899999999999999999854

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=95.92  E-value=0.0047  Score=47.07  Aligned_cols=23  Identities=17%  Similarity=0.447  Sum_probs=20.1

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcC
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .-|+|+|++|||||||...|...
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~   30 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKK   30 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHHH
Confidence            36889999999999999998763

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=95.92  E-value=0.0042  Score=47.68  Aligned_cols=22  Identities=18%  Similarity=0.258  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      -+.|+|++|+|||||++.+...
T Consensus       133 i~~I~G~~GsGKTTL~~~l~~~  154 (349)
T 1pzn_A          133 ITEVFGEFGSGKTQLAHTLAVM  154 (349)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999885

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=95.89  E-value=0.0051  Score=46.31  Aligned_cols=24  Identities=33%  Similarity=0.570  Sum_probs=20.9

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHcC
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .-.+++.|++|+|||+|+.++...
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~  175 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHE  175 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            357999999999999999988763

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=95.87  E-value=0.0056  Score=43.15  Aligned_cols=20  Identities=25%  Similarity=0.522  Sum_probs=17.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHc
Q 028986           36 LVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        36 i~i~G~~~sGKSsli~~l~~   55 (200)
                      .+|+|+.|+|||||+.++..
T Consensus        26 ~~I~G~NgsGKStil~ai~~   45 (203)
T 3qks_A           26 NLIIGQNGSGKSSLLDAILV   45 (203)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHHH
Confidence            56889999999999998853

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=95.87  E-value=0.0029  Score=51.98  Aligned_cols=22  Identities=32%  Similarity=0.489  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .++|+|++|||||||++.+.+-
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~  392 (587)
T 3qf4_A          371 LVAVLGETGSGKSTLMNLIPRL  392 (587)
T ss_dssp             EEEEECSSSSSHHHHHHTTTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6889999999999999988874

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.87  E-value=0.0057  Score=48.30  Aligned_cols=24  Identities=21%  Similarity=0.353  Sum_probs=21.4

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHcC
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      +-.|++.||||+|||+|++++.+.
T Consensus       215 prGvLL~GPPGtGKTllAkAiA~e  238 (437)
T 4b4t_L          215 PKGVLLYGPPGTGKTLLAKAVAAT  238 (437)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            347999999999999999999884

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=95.85  E-value=0.0056  Score=42.28  Aligned_cols=21  Identities=19%  Similarity=0.310  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 028986           36 LVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        36 i~i~G~~~sGKSsli~~l~~~   56 (200)
                      ++|+|.++||||+|...|...
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~   22 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCCcHHHHHHHHHhc
Confidence            789999999999999999864

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=95.83  E-value=0.0058  Score=46.49  Aligned_cols=23  Identities=35%  Similarity=0.566  Sum_probs=20.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcC
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .-|+|+|++|||||+|...|...
T Consensus        41 ~lIvI~GPTgsGKTtLa~~LA~~   63 (339)
T 3a8t_A           41 KLLVLMGATGTGKSRLSIDLAAH   63 (339)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTT
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            36889999999999999999864

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=95.81  E-value=0.0058  Score=46.03  Aligned_cols=22  Identities=18%  Similarity=0.403  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      -|+|+||+|||||+|...|...
T Consensus         5 ~i~i~GptgsGKt~la~~La~~   26 (322)
T 3exa_A            5 LVAIVGPTAVGKTKTSVMLAKR   26 (322)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEECCCcCCHHHHHHHHHHh
Confidence            4789999999999999999764

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=95.78  E-value=0.0061  Score=43.19  Aligned_cols=22  Identities=32%  Similarity=0.495  Sum_probs=20.0

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHc
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~   55 (200)
                      +.|+|.|++||||||+.+.|..
T Consensus         4 ~~i~i~G~~gsGkst~~~~l~~   25 (219)
T 2h92_A            4 INIALDGPAAAGKSTIAKRVAS   25 (219)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5699999999999999998866

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=95.78  E-value=0.0055  Score=47.03  Aligned_cols=22  Identities=23%  Similarity=0.617  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .+++.|++|+|||+|++.+...
T Consensus        72 ~vLl~GppGtGKT~la~~la~~   93 (368)
T 3uk6_A           72 AVLIAGQPGTGKTAIAMGMAQA   93 (368)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999999864

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.77  E-value=0.006  Score=47.56  Aligned_cols=24  Identities=21%  Similarity=0.382  Sum_probs=21.3

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHcC
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      +-.|++.||||+|||.|++++.+.
T Consensus       182 prGvLL~GPPGTGKTllAkAiA~e  205 (405)
T 4b4t_J          182 PKGVILYGPPGTGKTLLARAVAHH  205 (405)
T ss_dssp             CCCEEEESCSSSSHHHHHHHHHHH
T ss_pred             CCceEEeCCCCCCHHHHHHHHHHh
Confidence            346999999999999999999873

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.77  E-value=0.0056  Score=46.59  Aligned_cols=22  Identities=23%  Similarity=0.626  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .+++.|++|+|||++++.+...
T Consensus        60 ~~ll~G~~G~GKT~la~~la~~   81 (353)
T 1sxj_D           60 HMLFYGPPGTGKTSTILALTKE   81 (353)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4999999999999999999774

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=95.77  E-value=0.0023  Score=46.95  Aligned_cols=22  Identities=23%  Similarity=0.450  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .+++.|++|+|||+|++.+...
T Consensus        46 ~vll~G~~GtGKT~la~~la~~   67 (268)
T 2r62_A           46 GVLLVGPPGTGKTLLAKAVAGE   67 (268)
T ss_dssp             CCCCBCSSCSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            4889999999999999999863

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=95.76  E-value=0.0082  Score=45.13  Aligned_cols=22  Identities=18%  Similarity=0.490  Sum_probs=19.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      -|+|+|++|||||+|...|...
T Consensus        12 ~i~i~GptgsGKt~la~~La~~   33 (316)
T 3foz_A           12 AIFLMGPTASGKTALAIELRKI   33 (316)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHHh
Confidence            5789999999999999999763

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=95.75  E-value=0.0058  Score=46.96  Aligned_cols=23  Identities=26%  Similarity=0.440  Sum_probs=20.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcC
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      -.|++.|++|+|||+|++++...
T Consensus        85 ~~iLL~GppGtGKT~la~ala~~  107 (355)
T 2qp9_X           85 SGILLYGPPGTGKSYLAKAVATE  107 (355)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHHHH
Confidence            36999999999999999999874

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=95.72  E-value=0.0061  Score=46.88  Aligned_cols=24  Identities=25%  Similarity=0.542  Sum_probs=21.3

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHcC
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      ...|++.|++|+|||++++.+...
T Consensus        51 ~~~vll~GppGtGKT~la~~ia~~   74 (363)
T 3hws_A           51 KSNILLIGPTGSGKTLLAETLARL   74 (363)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            447999999999999999999874

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=95.72  E-value=0.0056  Score=48.86  Aligned_cols=23  Identities=35%  Similarity=0.593  Sum_probs=20.3

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcC
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      -+++++|++|+|||++++.+...
T Consensus       202 ~~~LL~G~pG~GKT~la~~la~~  224 (468)
T 3pxg_A          202 NNPVLIGEPGVGKTAIAEGLAQQ  224 (468)
T ss_dssp             CEEEEESCTTTTTHHHHHHHHHH
T ss_pred             CCeEEECCCCCCHHHHHHHHHHH
Confidence            37899999999999999998763

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=95.72  E-value=0.0031  Score=47.09  Aligned_cols=23  Identities=26%  Similarity=0.411  Sum_probs=17.0

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHc
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~   55 (200)
                      .+-|+|.|++||||||+.+.|..
T Consensus         5 ~~iIgItG~sGSGKSTva~~L~~   27 (290)
T 1a7j_A            5 HPIISVTGSSGAGTSTVKHTFDQ   27 (290)
T ss_dssp             SCEEEEESCC---CCTHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            34699999999999999998865

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=95.71  E-value=0.0049  Score=47.42  Aligned_cols=23  Identities=26%  Similarity=0.455  Sum_probs=20.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcC
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      -.++|.|++|+|||+|++.+...
T Consensus        45 ~~vll~G~~G~GKT~l~~~~~~~   67 (387)
T 2v1u_A           45 SNALLYGLTGTGKTAVARLVLRR   67 (387)
T ss_dssp             CCEEECBCTTSSHHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHH
Confidence            36999999999999999999863

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=95.70  E-value=0.0059  Score=49.12  Aligned_cols=22  Identities=27%  Similarity=0.502  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .|+++|++|+|||+|++.+.+.
T Consensus        66 GvLL~GppGtGKTtLaraIa~~   87 (499)
T 2dhr_A           66 GVLLVGPPGVGKTHLARAVAGE   87 (499)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4999999999999999999874

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=95.70  E-value=0.0063  Score=47.02  Aligned_cols=24  Identities=21%  Similarity=0.569  Sum_probs=21.2

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHcC
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      ...+++.|++|+|||++++.+...
T Consensus        72 ~~~ill~Gp~GtGKT~la~~la~~   95 (376)
T 1um8_A           72 KSNILLIGPTGSGKTLMAQTLAKH   95 (376)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHH
Confidence            346999999999999999999874

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=95.69  E-value=0.0067  Score=41.57  Aligned_cols=23  Identities=22%  Similarity=0.544  Sum_probs=20.6

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcC
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .-|+|.|++|+||||+...|...
T Consensus        17 ~gvli~G~SGaGKStlal~L~~r   39 (181)
T 3tqf_A           17 MGVLITGEANIGKSELSLALIDR   39 (181)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHc
Confidence            36899999999999999999874

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=95.69  E-value=0.0059  Score=49.70  Aligned_cols=22  Identities=32%  Similarity=0.564  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .++++|++|+|||+|++.+.+.
T Consensus       110 ~vll~Gp~GtGKTtlar~ia~~  131 (543)
T 3m6a_A          110 ILCLAGPPGVGKTSLAKSIAKS  131 (543)
T ss_dssp             EEEEESSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            5899999999999999999763

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=95.67  E-value=0.0069  Score=46.53  Aligned_cols=24  Identities=25%  Similarity=0.361  Sum_probs=21.2

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHcC
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .-.|++.|++|+|||+|++++...
T Consensus       117 ~~~vLl~GppGtGKT~la~aia~~  140 (357)
T 3d8b_A          117 PKGILLFGPPGTGKTLIGKCIASQ  140 (357)
T ss_dssp             CSEEEEESSTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            347999999999999999999874

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=95.67  E-value=0.0069  Score=44.31  Aligned_cols=23  Identities=26%  Similarity=0.459  Sum_probs=20.9

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcC
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      ..|+|.|++|+|||+|++.+...
T Consensus        30 ~~vll~G~~GtGKt~la~~i~~~   52 (265)
T 2bjv_A           30 KPVLIIGERGTGKELIASRLHYL   52 (265)
T ss_dssp             SCEEEECCTTSCHHHHHHHHHHT
T ss_pred             CCEEEECCCCCcHHHHHHHHHHh
Confidence            46999999999999999999875

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=95.67  E-value=0.0078  Score=45.65  Aligned_cols=23  Identities=17%  Similarity=0.339  Sum_probs=20.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcC
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      ..|+|.|++|+|||+|++.+...
T Consensus        56 ~~vll~G~~GtGKT~la~~ia~~   78 (338)
T 3pfi_A           56 DHILFSGPAGLGKTTLANIISYE   78 (338)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHHH
Confidence            36999999999999999999764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	200
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	8e-51
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	3e-48
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	5e-47
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	2e-46
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	2e-44
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	2e-44
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	3e-44
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	4e-44
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	5e-44
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	1e-43
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	9e-43
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	7e-42
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	1e-41
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	5e-39
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	5e-39
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	6e-37
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	1e-36
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	2e-36
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	2e-35
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	4e-35
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	5e-35
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	8e-35
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	2e-34
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	2e-34
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	6e-34
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	8e-34
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	9e-34
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	2e-33
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	4e-33
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	5e-33
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	1e-32
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	3e-32
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	3e-31
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	3e-31
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	1e-30
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	1e-29
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	1e-29
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	2e-29
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	4e-29
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	1e-27
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	9e-27
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	1e-26
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	4e-26
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	1e-25
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	1e-24
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	2e-24
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	3e-24
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	2e-23
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	2e-23
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	6e-23
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	2e-20
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	4e-19
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	5e-19
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	7e-19
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	3e-18
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	2e-12
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	2e-10
d2gj8a1	161	c.37.1.8 (A:216-376) Probable tRNA modification GT	4e-10
d1tq4a_	400	c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (	6e-07
d1mkya2	186	c.37.1.8 (A:173-358) Probable GTPase Der, N-termin	6e-07
d1udxa2	180	c.37.1.8 (A:157-336) Obg GTP-binding protein middl	4e-06
d1puia_	188	c.37.1.8 (A:) Probable GTPase EngB {Escherichia co	7e-06
d1wf3a1	178	c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {	8e-06
d1xzpa2	160	c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog	2e-05
d1mkya1	171	c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal	4e-05
d2cxxa1	184	c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc	6e-05
d2qn6a3	205	c.37.1.8 (A:2-206) Initiation factor eIF2 gamma su	2e-04
d1h65a_	257	c.37.1.8 (A:) Chloroplast protein translocon GTPas	3e-04
d1egaa1	179	c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {	4e-04

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  159 bits (404), Expect = 8e-51
 Identities = 67/158 (42%), Positives = 101/158 (63%), Gaps = 1/158 (0%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           KL+L+GDSGVGK+C++ RF    F+ T   T+G  F  +TI L D   +K +IWDTAGQE
Sbjct: 8   KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIEL-DGKRIKLQIWDTAGQE 66

Query: 95  RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
           R+  +   YYRGA   ++VYDIT+  SF+  + W++ +++H S D+   ++GNK D+++K
Sbjct: 67  RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDK 126

Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
           R+V  + G + A   G+ F+ETSAK   N+   F  L 
Sbjct: 127 RQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLA 164

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  153 bits (386), Expect = 3e-48
 Identities = 68/158 (43%), Positives = 102/158 (64%), Gaps = 2/158 (1%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           K++L+GDSGVGKSC+++RFV  +F+P+   T+G  F  +T+ +     VK +IWDTAGQE
Sbjct: 4   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDING-KKVKLQIWDTAGQE 62

Query: 95  RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
           R+  +   YYRGA   ++VYDIT   +F   + W K + +H + +  + LVGNK+D+   
Sbjct: 63  RFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME-T 121

Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
           R V A  G   A++ G+ FIE+SAK  DN+N++F  L 
Sbjct: 122 RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA 159

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  150 bits (379), Expect = 5e-47
 Identities = 61/159 (38%), Positives = 101/159 (63%), Gaps = 2/159 (1%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTS-KVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           K++L+GDSGVGK+C+++RF  G F   +   TVG  F ++ + +     VK ++WDTAGQ
Sbjct: 8   KVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDG-VKVKLQMWDTAGQ 66

Query: 94  ERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE 153
           ER+ ++   YYR A   +++YD+T+  SF+  Q W+ E+ ++   D+ + L+GNK D   
Sbjct: 67  ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAH 126

Query: 154 KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
           +R V  +DG + A++ G+ F+ETSAKT  N++  F  + 
Sbjct: 127 ERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIA 165

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  148 bits (375), Expect = 2e-46
 Identities = 68/159 (42%), Positives = 105/159 (66%), Gaps = 1/159 (0%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           K+VL+G++GVGK+C+V RF +G F P    T+G  F+ +T+ + +   VK +IWDTAGQE
Sbjct: 7   KIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEI-NGEKVKLQIWDTAGQE 65

Query: 95  RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
           R+ ++   YYR A   ++ YDIT  +SF     W++E++++ S  ++  LVGNK DL E+
Sbjct: 66  RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAER 125

Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT 193
           REV  Q   E++E   M+++ETSAK +DN+ +LF  L  
Sbjct: 126 REVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLAC 164

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  144 bits (363), Expect = 2e-44
 Identities = 74/159 (46%), Positives = 107/159 (67%), Gaps = 1/159 (0%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           K+VL+GDSGVGKS ++ RF R +F+  SK T+G  F +++I + D  T+K +IWDTAGQE
Sbjct: 6   KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV-DGKTIKAQIWDTAGQE 64

Query: 95  RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
           RY  +   YYRGA  A++VYDI    ++   + W+KEL+ H   +IV+ LVGNK+DL   
Sbjct: 65  RYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 124

Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT 193
           R VP  +   +AEKN + FIETSA  + N+ + F+ ++T
Sbjct: 125 RAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILT 163

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  144 bits (363), Expect = 2e-44
 Identities = 66/158 (41%), Positives = 98/158 (62%), Gaps = 1/158 (0%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           K++++G+SGVGKS ++LRF    FDP    T+G  F  +TI++ D    K  IWDTAGQE
Sbjct: 9   KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISV-DGNKAKLAIWDTAGQE 67

Query: 95  RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
           R+  L P YYRGA   ++VYD+T  D+F K   W+ EL+ + + + ++ ++       E 
Sbjct: 68  RFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN 127

Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
           REV   +G+++A K+ M FIE SAKT D +   FE L+
Sbjct: 128 REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELV 165

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  143 bits (362), Expect = 3e-44
 Identities = 65/158 (41%), Positives = 98/158 (62%), Gaps = 1/158 (0%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           KL+L+G+SGVGKSC++LRF    +      T+G  F  +T+ L    TVK +IWDTAGQE
Sbjct: 8   KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDG-KTVKLQIWDTAGQE 66

Query: 95  RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
           R+  +   YYRG+   ++VYD+T  +SFN  + W++E+ ++ +  ++  LVGNK DL +K
Sbjct: 67  RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDK 126

Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
           R V      E+A+ N M F+ETSA  + N+   F  + 
Sbjct: 127 RVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMA 164

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  142 bits (359), Expect = 4e-44
 Identities = 62/158 (39%), Positives = 94/158 (59%), Gaps = 1/158 (0%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           K++++G+S VGK+  + R+    F P    TVG  F  +TI   D   +K +IWDTAGQE
Sbjct: 7   KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRND-KRIKLQIWDTAGQE 65

Query: 95  RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
           RY  +   YYRGA   +++YDIT+ +SFN  Q W  +++ +   +  + LVGNK D+ ++
Sbjct: 66  RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDE 125

Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
           R V ++ G + A+  G  F E SAK   N+ Q FE L+
Sbjct: 126 RVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLV 163

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  143 bits (360), Expect = 5e-44
 Identities = 59/169 (34%), Positives = 96/169 (56%), Gaps = 10/169 (5%)

Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQ---------DSTTVK 84
           +KL+ LGDSGVGK+  + R+   +F+P    TVG  F  + +             +  V 
Sbjct: 6   IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 65

Query: 85  FEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPD-IVMA 143
            ++WDTAGQER+ +L   ++R A   ++++D+TS  SF   + W+ +LQ +   +   + 
Sbjct: 66  LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 125

Query: 144 LVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
           L+GNKADL ++REV  +   E A+K G+ + ETSA T  N+ +  E L+
Sbjct: 126 LIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLL 174

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  141 bits (356), Expect = 1e-43
 Identities = 63/158 (39%), Positives = 100/158 (63%), Gaps = 1/158 (0%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           K +++GD GVGKSC++ +F   +F      T+G  F ++ I +     +K +IWDTAGQE
Sbjct: 6   KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEV-SGQKIKLQIWDTAGQE 64

Query: 95  RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
           R+ A+   YYRGAA A++VYDIT   ++N    W+ + +   +P+ V+ L+GNKADL  +
Sbjct: 65  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQ 124

Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
           R+V  ++  ++AE+NG+ F+E SAKT +N+   F    
Sbjct: 125 RDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAA 162

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  139 bits (351), Expect = 9e-43
 Identities = 64/159 (40%), Positives = 108/159 (67%), Gaps = 1/159 (0%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           K +++GD+GVGKSC++L+F   +F P   +T+G  F ++ + +     +K +IWDTAGQE
Sbjct: 5   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDG-KQIKLQIWDTAGQE 63

Query: 95  RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
            + ++   YYRGAA A++VYDIT  ++FN    W+++ ++H S ++V+ L+GNK+DL  +
Sbjct: 64  SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESR 123

Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT 193
           R+V  ++G  +A ++G+ F+ETSAKTA N+ + F     
Sbjct: 124 RDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAK 162

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  137 bits (345), Expect = 7e-42
 Identities = 63/158 (39%), Positives = 98/158 (62%), Gaps = 1/158 (0%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           K +++G++G GKSC++ +F+  +F   S  T+G  F S+ I       VK +IWDTAGQE
Sbjct: 7   KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIIN-VGGKYVKLQIWDTAGQE 65

Query: 95  RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
           R+ ++   YYRGAA A++VYDITS +++N    W+ + +   S +IV+ L GNK DL   
Sbjct: 66  RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDAD 125

Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
           REV   +   +A++N + F+ETSA T +N+ + F    
Sbjct: 126 REVTFLEASRFAQENELMFLETSALTGENVEEAFVQCA 163

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  136 bits (343), Expect = 1e-41
 Identities = 68/158 (43%), Positives = 104/158 (65%), Gaps = 1/158 (0%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           KLV LG+  VGK+ ++ RF+   FD T + T+G  FLS+T+   +  T++ ++WDTAGQE
Sbjct: 2   KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMY-LEDRTIRLQLWDTAGQE 60

Query: 95  RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
           R+ +L P Y R +A AVVVYDIT+ +SF +   W+ +++     D+++ LVGNK DL +K
Sbjct: 61  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 120

Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
           R+V  ++G   A++  + FIETSAK   N+ QLF  + 
Sbjct: 121 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 158

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  129 bits (325), Expect = 5e-39
 Identities = 52/159 (32%), Positives = 87/159 (54%), Gaps = 3/159 (1%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           K+V+LG  GVGKS + ++FV G F      T+   +  +     DS+    EI DTAG E
Sbjct: 5   KVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIE--VDSSPSVLEILDTAGTE 62

Query: 95  RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHE 153
           ++A++  LY +     ++VY + +  SF   +    ++ +      + + LVGNK DL  
Sbjct: 63  QFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLES 122

Query: 154 KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
           +REV + +G   AE+ G  F+ETSAK+   +++LF  ++
Sbjct: 123 EREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIV 161

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  129 bits (325), Expect = 5e-39
 Identities = 97/158 (61%), Positives = 124/158 (78%), Gaps = 1/158 (0%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           KLVLLG+S VGKS +VLRFV+GQF    + T+GA+FL+QT+ L D TTVKFEIWDTAGQE
Sbjct: 8   KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDD-TTVKFEIWDTAGQE 66

Query: 95  RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
           RY +LAP+YYRGA  A+VVYDIT+ +SF +A+ WVKELQ+  SP+IV+AL GNKADL  K
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126

Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
           R V  Q+   YA+ N + F+ETSAKT+ N+N++F  + 
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIA 164

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  125 bits (313), Expect = 6e-37
 Identities = 42/172 (24%), Positives = 70/172 (40%), Gaps = 15/172 (8%)

Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           +K V++GD  VGK+C+++ +   +F      TV  ++    +           ++DTAGQ
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM--IGGEPYTLGLFDTAGQ 61

Query: 94  ERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE 153
           E Y  L PL Y    V +V + + SP SF   +        H  P     LVG + DL +
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121

Query: 154 KREV------------PAQDGIEYAEK-NGMFFIETSAKTADNINQLFEVLI 192
                             +   + A     + ++E SA T   +  +F+  I
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  123 bits (309), Expect = 1e-36
 Identities = 72/158 (45%), Positives = 98/158 (62%), Gaps = 1/158 (0%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           K+VLLG+  VGK+ +VLR+   +F+     T+GASFL++ + +     V   IWDTAGQE
Sbjct: 5   KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGG-KRVNLAIWDTAGQE 63

Query: 95  RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
           R+ AL P+YYR +  A++VYDIT  DSF K + WVKEL+K    +I + +VGNK DL ++
Sbjct: 64  RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKE 123

Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
           R V  Q+   YAE  G     TSAK    I +LF  L 
Sbjct: 124 RHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLC 161

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score =  123 bits (308), Expect = 2e-36
 Identities = 51/159 (32%), Positives = 92/159 (57%), Gaps = 3/159 (1%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           K++++G  GVGKS + L+F+  +F    + T   S+  + +   D   V+ +I DTAGQE
Sbjct: 6   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV--LDGEEVQIDILDTAGQE 63

Query: 95  RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHE 153
            YAA+   Y+R     + V+ IT  +SF     + +++ +     ++   LVGNK+DL +
Sbjct: 64  DYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED 123

Query: 154 KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
           KR+V  ++    A++  + ++ETSAKT  N++++F  L+
Sbjct: 124 KRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLM 162

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  120 bits (302), Expect = 2e-35
 Identities = 81/160 (50%), Positives = 108/160 (67%), Gaps = 1/160 (0%)

Query: 33  RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAG 92
            +K+ LLGD+GVGKS I+ RFV   FDP    T+GASF         +   KF IWDTAG
Sbjct: 4   ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASF-MTKTVQYQNELHKFLIWDTAG 62

Query: 93  QERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLH 152
            ER+ ALAP+YYRG+A A++VYDIT  ++F+  + WV+EL++HG P IV+A+ GNK DL 
Sbjct: 63  LERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLT 122

Query: 153 EKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
           + REV  +D  +YA+     F+ETSAK A NIN+LF  + 
Sbjct: 123 DVREVMERDAKDYADSIHAIFVETSAKNAININELFIEIS 162

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  119 bits (299), Expect = 4e-35
 Identities = 85/162 (52%), Positives = 115/162 (70%), Gaps = 4/162 (2%)

Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           +KLVLLG++ VGKS IVLRFV   F    + T+GA+F        +  TVKFEIWDTAGQ
Sbjct: 4   IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAF-LTQRVTINEHTVKFEIWDTAGQ 62

Query: 94  ERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE 153
           ER+A+LAP+YYR A  A+VVYD+T P SF KA++WVKEL +  S DI++ALVGNK D+ +
Sbjct: 63  ERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQ 122

Query: 154 K---REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
           +   R+V  ++G + AE+ G+ F ETSAKT +N+N +F  + 
Sbjct: 123 EGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIG 164

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  120 bits (300), Expect = 5e-35
 Identities = 47/173 (27%), Positives = 81/173 (46%), Gaps = 15/173 (8%)

Query: 33  RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAG 92
            +K V++GD  VGK+C+++ +    F      TV  ++ +  +   D   V   +WDTAG
Sbjct: 5   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM--VDGKPVNLGLWDTAG 62

Query: 93  QERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLH 152
           QE Y  L PL Y    V+++ + + SP SF   +       +H  P+  + LVG K DL 
Sbjct: 63  QEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR 122

Query: 153 EKREVP------------AQDGIEYAEKNG-MFFIETSAKTADNINQLFEVLI 192
           + ++                 G+  A++ G + ++E SA T   +  +F+  I
Sbjct: 123 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 175

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  119 bits (298), Expect = 8e-35
 Identities = 54/163 (33%), Positives = 85/163 (52%), Gaps = 7/163 (4%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           K++LLGD GVGKS ++ R+V  +FD     T+G  FL++ + +        +IWDTAGQE
Sbjct: 8   KVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFV-TMQIWDTAGQE 66

Query: 95  RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGS----PDIVMALVGNKAD 150
           R+ +L   +YRG+   ++ + +    SF     W KE   +            ++GNK D
Sbjct: 67  RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKID 126

Query: 151 LHEKREVPAQDGIEYAEKNG-MFFIETSAKTADNINQLFEVLI 192
           + E R+V  ++   +   NG   + ETSAK A N+   FE  +
Sbjct: 127 ISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAV 168

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  118 bits (295), Expect = 2e-34
 Identities = 52/159 (32%), Positives = 82/159 (51%), Gaps = 4/159 (2%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           KLV++G  GVGKS + ++ ++  F      T+  S+  Q +   D  T   +I DTAGQE
Sbjct: 5   KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV--IDGETCLLDILDTAGQE 62

Query: 95  RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHE 153
            Y+A+   Y R     + V+ I +  SF     + +++++   S D+ M LVGNK D   
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD-LA 121

Query: 154 KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
            R V ++   + A   G+ +IETSAKT   +   F  L+
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  118 bits (295), Expect = 2e-34
 Identities = 54/174 (31%), Positives = 84/174 (48%), Gaps = 15/174 (8%)

Query: 32  LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTA 91
           +R KLV++GD   GK+C+++   + QF      TV  ++++      D   V+  +WDTA
Sbjct: 1   IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIE--VDGKQVELALWDTA 58

Query: 92  GQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADL 151
           G E Y  L PL Y    V ++ + I SPDS            KH  P++ + LVGNK DL
Sbjct: 59  GLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDL 118

Query: 152 HEKREV------------PAQDGIEYAEKNGMF-FIETSAKTADNINQLFEVLI 192
                               ++G + A + G F ++E SAKT D + ++FE+  
Sbjct: 119 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMAT 172

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  117 bits (292), Expect = 6e-34
 Identities = 44/175 (25%), Positives = 81/175 (46%), Gaps = 16/175 (9%)

Query: 32  LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTA 91
           ++ K+V++GDS  GK+ ++  F +  F      TV  ++ +      D+  ++  +WDT+
Sbjct: 1   VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFE--IDTQRIELSLWDTS 58

Query: 92  GQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADL 151
           G   Y  + PL Y  +   ++ +DI+ P++ +      K   +   P+  M LVG K+DL
Sbjct: 59  GSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDL 118

Query: 152 ------------HEKREVPAQDGIEYAEKNG-MFFIETSAKTADN-INQLFEVLI 192
                       H +  V    G   A++ G   +IE SA  ++N +  +F V  
Sbjct: 119 RTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVAT 173

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  116 bits (290), Expect = 8e-34
 Identities = 58/162 (35%), Positives = 91/162 (56%), Gaps = 6/162 (3%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           K++++GDS VGK+C+  RF  G+F   ++ T+G  F  + + +     +K ++WDTAGQE
Sbjct: 4   KIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDG-ERIKIQLWDTAGQE 62

Query: 95  RYAAL-APLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLH 152
           R+       YYR     V VYD+T+  SF+    W++E ++H  + DI   LVGNK DL 
Sbjct: 63  RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR 122

Query: 153 EKREVPAQDGIEYAEKNGMFFIETSAKTA---DNINQLFEVL 191
              +VP     ++A+ + M   ETSAK     D++  +F  L
Sbjct: 123 SAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTL 164

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  116 bits (291), Expect = 9e-34
 Identities = 42/180 (23%), Positives = 77/180 (42%), Gaps = 15/180 (8%)

Query: 26  SSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKF 85
           +     L +K V++GD  VGK+C+++ +    F      TV   +               
Sbjct: 2   AHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY--AVSVTVGGKQYLL 59

Query: 86  EIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALV 145
            ++DTAGQE Y  L PL Y    V ++ + + +P SF   +       K  +P++   L+
Sbjct: 60  GLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLI 119

Query: 146 GNKADLHEKRE------------VPAQDGIEYAEKNG-MFFIETSAKTADNINQLFEVLI 192
           G + DL +  +            +  + G + A++ G   ++E SA T   +  +F+  I
Sbjct: 120 GTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAI 179

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  115 bits (289), Expect = 2e-33
 Identities = 51/161 (31%), Positives = 84/161 (52%), Gaps = 3/161 (1%)

Query: 33  RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAG 92
             KLV++G  GVGKS + ++F++  F      T+  S+    I   D    + +I DTAG
Sbjct: 6   THKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSY--TKICSVDGIPARLDILDTAG 63

Query: 93  QERYAALAPLYYRGAAVAVVVYDITSPDSFNK-AQYWVKELQKHGSPDIVMALVGNKADL 151
           QE + A+   Y R     ++V+ I    SFN+  + + + L+     D  + LVGNKADL
Sbjct: 64  QEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADL 123

Query: 152 HEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
             +R+VP  +   +   + + + E SAK   N+++ FE L+
Sbjct: 124 ESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLV 164

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  114 bits (286), Expect = 4e-33
 Identities = 58/160 (36%), Positives = 87/160 (54%), Gaps = 4/160 (2%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           KLV+LG  GVGKS + ++FV+G F      T+  S+  Q     D      EI DTAG E
Sbjct: 5   KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVE--VDCQQCMLEILDTAGTE 62

Query: 95  RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVK-ELQKHGSPDIVMALVGNKADLHE 153
           ++ A+  LY +      +VY IT+  +FN  Q   +  L+   + D+ M LVGNK DL +
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122

Query: 154 KREVPAQDGIEYAEK-NGMFFIETSAKTADNINQLFEVLI 192
           +R V  + G   A +     F+E+SAK+  N+N++F  L+
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLV 162

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  114 bits (286), Expect = 5e-33
 Identities = 49/161 (30%), Positives = 88/161 (54%), Gaps = 3/161 (1%)

Query: 33  RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAG 92
           + +LV++G  GVGKS + ++F++  F      T+  S+  Q +   D    + +I DTAG
Sbjct: 5   KYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCV--IDDRAARLDILDTAG 62

Query: 93  QERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKE-LQKHGSPDIVMALVGNKADL 151
           QE + A+   Y R     ++V+ +T   SF +   + ++ L+     +  M L+GNKADL
Sbjct: 63  QEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADL 122

Query: 152 HEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
             +R+V  ++G + A +  + ++E SAK   N++Q F  L+
Sbjct: 123 DHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELV 163

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  113 bits (283), Expect = 1e-32
 Identities = 54/168 (32%), Positives = 91/168 (54%), Gaps = 7/168 (4%)

Query: 31  NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDT 90
           N+ +K+++LGDSGVGK+ ++ R+V  ++    K T+GA FL++ + +        ++WDT
Sbjct: 1   NI-LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDT 59

Query: 91  AGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKH----GSPDIVMALVG 146
           AGQER+ +L   +YRGA   V+VYD+T+  SF   + W  E   H            ++G
Sbjct: 60  AGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILG 119

Query: 147 NKADLHEKREVPAQDGIEY--AEKNGMFFIETSAKTADNINQLFEVLI 192
           NK D  E +++ ++   +        +    TSAK A N++  FE + 
Sbjct: 120 NKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIA 167

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  112 bits (281), Expect = 3e-32
 Identities = 59/162 (36%), Positives = 94/162 (58%), Gaps = 5/162 (3%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           K+++LGDSGVGK+ ++ ++V  +F    K T+GA FL++ + + D   V  +IWDTAGQE
Sbjct: 4   KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDD-RLVTMQIWDTAGQE 62

Query: 95  RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSP----DIVMALVGNKAD 150
           R+ +L   +YRGA   V+V+D+T+P++F     W  E     SP    +    ++GNK D
Sbjct: 63  RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 122

Query: 151 LHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
           L  ++    +       KN + + ETSAK A N+ Q F+ + 
Sbjct: 123 LENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIA 164

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  109 bits (273), Expect = 3e-31
 Identities = 55/160 (34%), Positives = 82/160 (51%), Gaps = 4/160 (2%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           KLV++GD GVGKS + ++F +  F P    T+  S+L  T    D+     ++ DTAGQE
Sbjct: 6   KLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTE--IDNQWAILDVLDTAGQE 63

Query: 95  RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVK-ELQKHGSPDIVMALVGNKADLHE 153
            ++A+   Y R     ++VY +T   SF     + +  L+        M LV NK DL  
Sbjct: 64  EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 123

Query: 154 KREVPAQDGIEYAEKNGMFFIETSAKTAD-NINQLFEVLI 192
            R+V    G E A K  + +IETSAK    N+++ F  L+
Sbjct: 124 LRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLV 163

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score =  109 bits (273), Expect = 3e-31
 Identities = 25/163 (15%), Positives = 59/163 (36%), Gaps = 10/163 (6%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           +++++G    GK+ I+ +   G+   T             +   +   + F +WD  GQ+
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEIVTTIPTIG------FNVETVEYKNISFTVWDVGGQD 55

Query: 95  RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPD----IVMALVGNKAD 150
           +   L   Y++     + V D    +  N+A+  +  +           +V A   +  +
Sbjct: 56  KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 115

Query: 151 LHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT 193
                E+  + G+        +   T A + D + +  + L  
Sbjct: 116 AMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSN 158

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  108 bits (269), Expect = 1e-30
 Identities = 54/161 (33%), Positives = 87/161 (54%), Gaps = 2/161 (1%)

Query: 32  LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTA 91
           + +K+V++G+  VGKS ++ R+ +G F    K T+G  FL + I + D   V+  +WDTA
Sbjct: 1   VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVND-EDVRLMLWDTA 59

Query: 92  GQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADL 151
           GQE + A+   YYRGA   V+V+  T  +SF       +E       DI  ALV NK DL
Sbjct: 60  GQEEFDAITKAYYRGAQACVLVFSTTDRESFEA-ISSWREKVVAEVGDIPTALVQNKIDL 118

Query: 152 HEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
            +   +  ++    A++  + F  TS K   N++++F+ L 
Sbjct: 119 LDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLA 159

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score =  106 bits (264), Expect = 1e-29
 Identities = 37/164 (22%), Positives = 70/164 (42%), Gaps = 10/164 (6%)

Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           +++++LG    GK+ I+ +   GQ   T+  TVG +  + T        VKF +WD  GQ
Sbjct: 13  MRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVGFNVETVTY-----KNVKFNVWDVGGQ 66

Query: 94  ERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLH 152
           ++   L   YY G    + V D    D  ++A+  +  +       D ++ +  NK DL 
Sbjct: 67  DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLP 126

Query: 153 EKR---EVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT 193
           +     E+  + G+        +   + A + D + +    L +
Sbjct: 127 DAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTS 170

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (262), Expect = 1e-29
 Identities = 44/161 (27%), Positives = 72/161 (44%), Gaps = 5/161 (3%)

Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           VKL + G +GVGKS +V+RF+  +F      T+ +++  Q     +  +++         
Sbjct: 3   VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED 62

Query: 94  ERYAALAPLYYRGAAVAVVVYDITSPDS-FNKAQYWVKELQKHGSPDIVMALVGNKADLH 152
                    + R     V+VYDIT   S            +     ++ + LVGNKADL 
Sbjct: 63  TIQ---REGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLD 119

Query: 153 EKREVPAQDGIEYAEKNGMFFIETSAKTAD-NINQLFEVLI 192
             R+V  ++G + A +    F E SA T + NI ++F  L 
Sbjct: 120 HSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELC 160

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (262), Expect = 2e-29
 Identities = 50/160 (31%), Positives = 78/160 (48%), Gaps = 4/160 (2%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           ++ + G  GVGKS +VLRFV+G F  +   TV  ++        D +    +I DT G  
Sbjct: 4   RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVIS--CDKSICTLQITDTTGSH 61

Query: 95  RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKEL--QKHGSPDIVMALVGNKADLH 152
           ++ A+  L        ++VY ITS  S  + +   +++   K     I + LVGNK D  
Sbjct: 62  QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 121

Query: 153 EKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
             REV + +    A      F+ETSAK   N+ +LF+ L+
Sbjct: 122 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELL 161

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score =  104 bits (260), Expect = 4e-29
 Identities = 37/167 (22%), Positives = 65/167 (38%), Gaps = 10/167 (5%)

Query: 30  KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWD 89
            N  +++++LG  G GK+ I+ R   G+   T+K T+G +  + +        +K  +WD
Sbjct: 14  SNKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNVETLSY-----KNLKLNVWD 67

Query: 90  TAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMAL-VGNK 148
             GQ         YY   A  + V D T  D  + A   +  + +         L   NK
Sbjct: 68  LGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANK 127

Query: 149 ADL---HEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
            D        EV  +  +   +      + +SA   + I +  + LI
Sbjct: 128 QDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLI 174

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (249), Expect = 1e-27
 Identities = 50/165 (30%), Positives = 78/165 (47%), Gaps = 3/165 (1%)

Query: 30  KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWD 89
           ++   K+ +LG   VGKS + ++FV GQF  +   T+  +F        +      ++ D
Sbjct: 1   QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLIT--VNGQEYHLQLVD 58

Query: 90  TAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQ-YWVKELQKHGSPDIVMALVGNK 148
           TAGQ+ Y+     Y       ++VY +TS  SF   +    K L   G   I + LVGNK
Sbjct: 59  TAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNK 118

Query: 149 ADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT 193
            DLH +R +  ++G   AE     F+E+SAK       +F  +I 
Sbjct: 119 KDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIIL 163

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 98.5 bits (244), Expect = 9e-27
 Identities = 31/165 (18%), Positives = 59/165 (35%), Gaps = 10/165 (6%)

Query: 33  RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAG 92
             K++++G    GK+ I+ +F   +   TS                     +F +WD  G
Sbjct: 15  EHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEE------IVINNTRFLMWDIGG 68

Query: 93  QERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMAL-VGNKADL 151
           QE   +    YY      +VV D T  +  +  +  + ++  H        L   NK D+
Sbjct: 69  QESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDV 128

Query: 152 HEK---REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT 193
            E     E+     +   + +        A T + + Q  E +++
Sbjct: 129 KECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMS 173

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.8 bits (242), Expect = 1e-26
 Identities = 47/158 (29%), Positives = 80/158 (50%), Gaps = 4/158 (2%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           KLVL+GD G GK+  V R + G+F+     T+G           +   +KF +WDTAGQE
Sbjct: 5   KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVF-HTNRGPIKFNVWDTAGQE 63

Query: 95  RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
           ++  L   YY  A  A++++D+TS  ++     W ++L +    +I + L GNK D+ ++
Sbjct: 64  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV-CENIPIVLCGNKVDIKDR 122

Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
           +         +  K  + + + SAK+  N  + F  L 
Sbjct: 123 KVKAKSI--VFHRKKNLQYYDISAKSNYNFEKPFLWLA 158

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.7 bits (239), Expect = 4e-26
 Identities = 48/160 (30%), Positives = 68/160 (42%), Gaps = 4/160 (2%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           K++LLG  GVGKS +   F   +  P ++        S      D       ++D   Q+
Sbjct: 3   KVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIV---VDGEEASLMVYDIWEQD 59

Query: 95  RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMAL-VGNKADLHE 153
               L           V+VY +T   SF KA     +L++    D V  + VGNK+DL  
Sbjct: 60  GGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR 119

Query: 154 KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT 193
            REV   +G   A      FIETSA    N+  LFE ++ 
Sbjct: 120 SREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVR 159

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.6 bits (236), Expect = 1e-25
 Identities = 45/164 (27%), Positives = 71/164 (43%), Gaps = 2/164 (1%)

Query: 31  NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDT 90
           N   ++VL+G+ GVGKS +   F        S   V      +   + D  +    + D 
Sbjct: 1   NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDM 60

Query: 91  A-GQERYAALAPLYYRGAAVAVVVYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNK 148
              +     L     +     ++VY IT   SF   ++  ++  +   + DI + LVGNK
Sbjct: 61  WENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNK 120

Query: 149 ADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
           +DL   REV   +G   A      FIETSA    N+ +LFE ++
Sbjct: 121 SDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIV 164

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.1 bits (230), Expect = 1e-24
 Identities = 32/162 (19%), Positives = 63/162 (38%), Gaps = 8/162 (4%)

Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           ++L +LGD+  GKS ++ RF+ G +    K T    +  + +   D  T    I + AG 
Sbjct: 6   LRLGVLGDARSGKSSLIHRFLTGSYQVLEK-TESEQYKKEML--VDGQTHLVLIREEAGA 62

Query: 94  ERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE 153
                    +         + D  S  + ++    +  L+  G   + +ALVG +  +  
Sbjct: 63  PDAK--FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISA 120

Query: 154 K--REVPAQDGIEYA-EKNGMFFIETSAKTADNINQLFEVLI 192
              R V          +     + ET A    N++++F+ + 
Sbjct: 121 SSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVA 162

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 92.7 bits (229), Expect = 2e-24
 Identities = 29/168 (17%), Positives = 55/168 (32%), Gaps = 10/168 (5%)

Query: 29  AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIW 88
           A +  V+++LLG    GK+ ++ +         +  T G +  S           K  +W
Sbjct: 12  APDQEVRILLLGLDNAGKTTLLKQLASEDISHITP-TQGFNIKSVQSQ-----GFKLNVW 65

Query: 89  DTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGN 147
           D  GQ +       Y+    + + V D      F +    + EL +      + + +  N
Sbjct: 66  DIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFAN 125

Query: 148 KADLHEKR---EVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
           K DL       E+     +             SA T + +      + 
Sbjct: 126 KQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVC 173

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 91.7 bits (226), Expect = 3e-24
 Identities = 39/163 (23%), Positives = 68/163 (41%), Gaps = 9/163 (5%)

Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           ++L L+G    GK+  V     GQF+     TVG +    T        V  ++WD  GQ
Sbjct: 3   MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITK-----GNVTIKLWDIGGQ 57

Query: 94  ERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSP-DIVMALVGNKADLH 152
            R+ ++   Y RG +  V + D    +    ++  +  L        I + ++GNK DL 
Sbjct: 58  PRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLP 117

Query: 153 E---KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
               ++E+  +  +   +   +     S K  DNI+   + LI
Sbjct: 118 GALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLI 160

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 89.7 bits (221), Expect = 2e-23
 Identities = 26/163 (15%), Positives = 55/163 (33%), Gaps = 10/163 (6%)

Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           ++L++LG    GK+ I+ +F     D     T+  +         +    K  IWD  GQ
Sbjct: 3   LRLLMLGLDNAGKTTILKKFNGEDVD-----TISPTLGFNIKT-LEHRGFKLNIWDVGGQ 56

Query: 94  ERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKH----GSPDIVMALVGNKA 149
           +   +    Y+      + V D          Q  ++ L       G+  ++ A   +  
Sbjct: 57  KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLP 116

Query: 150 DLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
                  +     ++    +       SA T +++    + L+
Sbjct: 117 GALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLL 159

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 90.4 bits (223), Expect = 2e-23
 Identities = 29/196 (14%), Positives = 55/196 (28%), Gaps = 44/196 (22%)

Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           +KL+LLG    GKS  + +            T G       +      +V F + D  GQ
Sbjct: 3   LKLLLLGTGESGKSTFIKQMRIIHGSGVP--TTGIIEYPFDL-----QSVIFRMVDVGGQ 55

Query: 94  ERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQY-----------WVKELQKHGSPDIVM 142
                     +      + +  ++  D                  +   +      +  +
Sbjct: 56  RSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSV 115

Query: 143 ALVGNKADLHEKREVPAQDGIEYAEKNGM--------------------------FFIET 176
            L  NK DL E++ + +     + E +G                           +   T
Sbjct: 116 ILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFT 175

Query: 177 SAKTADNINQLFEVLI 192
            A   +NI  +F  + 
Sbjct: 176 CATDTENIRFVFAAVK 191

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 88.6 bits (218), Expect = 6e-23
 Identities = 29/163 (17%), Positives = 60/163 (36%), Gaps = 10/163 (6%)

Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           +++++LG  G GK+ I+ R   G+   T         +   +       +KF++WD  G 
Sbjct: 6   MRILILGLDGAGKTTILYRLQVGEVVTTI------PTIGFNVETVTYKNLKFQVWDLGGL 59

Query: 94  ERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVM-ALVGNKADLH 152
                    YY      + V D    D    ++  +  + +       +  +  NK D+ 
Sbjct: 60  TSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDME 119

Query: 153 EKR---EVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
           +     E+    G+   +       +TSA     +++  E L+
Sbjct: 120 QAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLV 162

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 81.7 bits (200), Expect = 2e-20
 Identities = 28/169 (16%), Positives = 52/169 (30%), Gaps = 17/169 (10%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           KL+ LG    GK+ ++      +       T   +     I       +KF  +D  G  
Sbjct: 2   KLLFLGLDNAGKTTLLHMLKNDRLATLQ-PTWHPTSEELAI-----GNIKFTTFDLGGHI 55

Query: 95  RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSP-DIVMALVGNKADLHE 153
           +   L   Y+      V + D   P+ F++A+  +  L       D+   ++GNK D   
Sbjct: 56  QARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN 115

Query: 154 KREV----------PAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
                                   +  +     S    +   + F+ L 
Sbjct: 116 AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLS 164

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 79.2 bits (194), Expect = 4e-19
 Identities = 33/196 (16%), Positives = 53/196 (27%), Gaps = 47/196 (23%)

Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           VKL+LLG    GKS IV +              G               + F+++D  GQ
Sbjct: 3   VKLLLLGAGESGKSTIVKQMKIIHE-----AGTGIVETHF-----TFKDLHFKMFDVGGQ 52

Query: 94  ERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQY-----------WVKELQKHGSPDIVM 142
                     + G    +    ++  D                  +          D  +
Sbjct: 53  RSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSI 112

Query: 143 ALVGNKADLHEKREVPAQDGIEYAEKNGM--------------------------FFIET 176
            L  NK DL E++   +   I Y E  G                           +   T
Sbjct: 113 ILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFT 172

Query: 177 SAKTADNINQLFEVLI 192
            A    N+  +F+ + 
Sbjct: 173 CATDTKNVQFVFDAVT 188

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 78.6 bits (192), Expect = 5e-19
 Identities = 21/175 (12%), Positives = 48/175 (27%), Gaps = 22/175 (12%)

Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
            KLV LG    GK+ ++      +                T        + F  +D  G 
Sbjct: 14  GKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLH------PTSEELTIAGMTFTTFDLGGH 67

Query: 94  ERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGS-PDIVMALVGNKADL- 151
            +   +   Y       V + D    +   +++  +  L    +  ++ + ++GNK D  
Sbjct: 68  IQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRP 127

Query: 152 --------------HEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
                         + +        ++      +     S        + F  + 
Sbjct: 128 EAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMA 182

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 78.4 bits (192), Expect = 7e-19
 Identities = 30/194 (15%), Positives = 52/194 (26%), Gaps = 46/194 (23%)

Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
           VK++LLG    GKS  + +    +       T G       I       V F++ D  GQ
Sbjct: 3   VKILLLGAGESGKSTFLKQM---RIIHGQDPTKGIHEYDFEI-----KNVPFKMVDVGGQ 54

Query: 94  ERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKE-----------LQKHGSPDIVM 142
                     +      + +   +  D                      +      ++ +
Sbjct: 55  RSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSI 114

Query: 143 ALVGNKADLHEKREVPAQDGIEYAEKNGM---------------------------FFIE 175
            L  NK DL E++         + E  G                            +   
Sbjct: 115 ILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHF 174

Query: 176 TSAKTADNINQLFE 189
           T+A   +NI  +F 
Sbjct: 175 TTAINTENIRLVFR 188

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 77.1 bits (189), Expect = 3e-18
 Identities = 30/167 (17%), Positives = 48/167 (28%), Gaps = 21/167 (12%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
           +L+LLG    GKS IV +            T G         +     V F ++D  GQ 
Sbjct: 8   RLLLLGAGESGKSTIVKQMRILHVVL----TSG--IFETKFQVDK---VNFHMFDVGGQR 58

Query: 95  RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGS-----------PDIVMA 143
                    +      + V   +S +   +       LQ+  +             I + 
Sbjct: 59  DERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVI 118

Query: 144 LVGNKADL-HEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFE 189
           L  NK DL  EK         +Y  +   +     A      +    
Sbjct: 119 LFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVT 165

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.6 bits (148), Expect = 2e-12
 Identities = 23/154 (14%), Positives = 47/154 (30%), Gaps = 8/154 (5%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
            ++ +G    GK+ + +R + GQ+  T   ++  S     +      ++           
Sbjct: 2   AVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSSAIYKVNNNRGNSLTLIDLPGHESL 60

Query: 95  RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQ----YWVKELQKHGSPDIVMALVGNKAD 150
           R+      +   A   V V D  +     K      Y V            + +  NK D
Sbjct: 61  RFQL-LDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQD 119

Query: 151 LHEKREVPAQDGIEYAEKNGMFFIETSAKTADNI 184
           +   +   A+   +  EK       T +     +
Sbjct: 120 IAMAK--SAKLIQQQLEKELNTLRVTRSAAPSTL 151

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.2 bits (134), Expect = 2e-10
 Identities = 22/168 (13%), Positives = 44/168 (26%), Gaps = 14/168 (8%)

Query: 36  LVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQER 95
           +++ G    GK+ ++         PT  V       +        T V F        + 
Sbjct: 6   IIIAGPQNSGKTSLLTLLTTDSVRPT--VVSQEPLSAADYDGSGVTLVDFPGHVKLRYKL 63

Query: 96  YAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKH----GSPDIVMALVGNKADL 151
              L         +  +V     P        ++ ++           I + +  NK++L
Sbjct: 64  SDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSEL 123

Query: 152 HEKREVPAQ--------DGIEYAEKNGMFFIETSAKTADNINQLFEVL 191
              R               +    K  +  +E      D      +VL
Sbjct: 124 FTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLDVL 171

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

 Score = 54.0 bits (128), Expect = 4e-10
 Identities = 28/165 (16%), Positives = 54/165 (32%), Gaps = 14/165 (8%)

Query: 34  VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKV------TVGASFLSQTIALQDSTTVKFEI 87
           +K+V+ G    GKS ++      +    + +       +        + L    T     
Sbjct: 2   MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRE 61

Query: 88  WDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGN 147
                +      A      A   + + D T+ D+ +       E        + + +V N
Sbjct: 62  ASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDP-AEIWPEFIARLPAKLPITVVRN 120

Query: 148 KADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
           KAD+  +           +E NG   I  SA+T + ++ L   L 
Sbjct: 121 KADITGETL-------GMSEVNGHALIRLSARTGEGVDVLRNHLK 158

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.7 bits (110), Expect = 6e-07
 Identities = 20/159 (12%), Positives = 38/159 (23%), Gaps = 12/159 (7%)

Query: 19  NNLENAGSS------DAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLS 72
            N++   S+      +  +  + + + G++G GKS  +        +       G   ++
Sbjct: 36  GNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT 95

Query: 73  QTIALQDST-TVKFEIWDTAGQERYAALAPLYYR--GAAVAVVVYDITSPDSFNKAQYWV 129
                           WD  G          Y              I++           
Sbjct: 96  MERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIA 155

Query: 130 KELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEK 168
           K +            V  K D     E   +      EK
Sbjct: 156 KAISMMKKE---FYFVRTKVDSDITNEADGEPQTFDKEK 191

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 45.4 bits (106), Expect = 6e-07
 Identities = 32/179 (17%), Positives = 60/179 (33%), Gaps = 15/179 (8%)

Query: 33  RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAG 92
            +K+ ++G   VGKS +    +  +    S +              D    K+   DTAG
Sbjct: 8   AIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDG--RKYVFVDTAG 65

Query: 93  QERYAALAP-----------LYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIV 141
             R + + P           +     A  VV+    +     + Q     +++ G   +V
Sbjct: 66  LRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVV 125

Query: 142 MALVGNKADLHEKREVPAQDGIEYAEKNGMF--FIETSAKTADNINQLFEVLITCTSSY 198
           +    +     EKR                +   I TSA    NI+++ + +    +SY
Sbjct: 126 VFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYASY 184

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

 Score = 43.1 bits (100), Expect = 4e-06
 Identities = 27/163 (16%), Positives = 48/163 (29%), Gaps = 12/163 (7%)

Query: 38  LLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAG----- 92
           L+G    GKS ++    R             +       ++ S   +F + D  G     
Sbjct: 6   LVGYPNAGKSSLLAAMTRAHPKIAP--YPFTTLSPNLGVVEVSEEERFTLADIPGIIEGA 63

Query: 93  --QERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMAL-VGNKA 149
              +        +     V + V D              +      +     +L   NK 
Sbjct: 64  SEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKV 123

Query: 150 DLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
           DL E+  V  +   +   + G+  +  SA T   +  L E L 
Sbjct: 124 DLLEEEAV--KALADALAREGLAVLPVSALTGAGLPALKEALH 164

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} Length = 188

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

 Score = 42.5 bits (98), Expect = 7e-06
 Identities = 23/173 (13%), Positives = 51/173 (29%), Gaps = 9/173 (5%)

Query: 30  KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKF---- 85
            +  +++   G S  GKS  +      +    +  T G + L     + D   +      
Sbjct: 13  SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGY 72

Query: 86  ----EIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIV 141
                  +   + + A    L  R +   +VV         +  Q  ++         +V
Sbjct: 73  GYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLV 132

Query: 142 MALVGNKADLHEKREVPAQDGIEYAEKNGMF-FIETSAKTADNINQLFEVLIT 193
           +    +K     ++             NG       S+     +++L + L T
Sbjct: 133 LLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDT 185

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

 Score = 42.4 bits (98), Expect = 8e-06
 Identities = 28/160 (17%), Positives = 48/160 (30%), Gaps = 6/160 (3%)

Query: 37  VLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIA----LQDSTTVKFEIWDTAG 92
            ++G   VGKS ++   +  +  P S          + I      Q        +     
Sbjct: 9   AIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMD 68

Query: 93  QERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLH 152
                    +Y   A V  VV+ +            V    K     + + LVGNK D  
Sbjct: 69  ALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAA 128

Query: 153 EKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
           +  E   +   E   +     +  SA     + +L   L+
Sbjct: 129 KYPEEAMKAYHELLPEAEPRML--SALDERQVAELKADLL 166

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 41.1 bits (95), Expect = 2e-05
 Identities = 28/166 (16%), Positives = 55/166 (33%), Gaps = 18/166 (10%)

Query: 35  KLVLLGDSGVGKSCIVLRFVRG--------QFDPTSKVTVGASFLSQTIALQDSTTVKFE 86
           ++V++G   VGKS ++ R +                 ++           + D+  V+ E
Sbjct: 2   RMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSE 61

Query: 87  IWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVG 146
             D   +             A + + V D +SP      +   +   K         +V 
Sbjct: 62  TND-LVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKR------YLVVI 114

Query: 147 NKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
           NK D+ EK        I+         ++ SA   + + +L E + 
Sbjct: 115 NKVDVVEKINEEE---IKNKLGTDRHMVKISALKGEGLEKLEESIY 157

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 40.5 bits (93), Expect = 4e-05
 Identities = 24/163 (14%), Positives = 48/163 (29%), Gaps = 13/163 (7%)

Query: 37  VLLGDSGVGKSCIVLRFVRGQFDPTSKV-------TVGASFLSQTIALQDSTTVKFEIWD 89
           +++G   VGKS +  + V+ +                              T   F+   
Sbjct: 4   LIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQ 63

Query: 90  TAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKA 149
               ++   +     R A + + V D     +           +      +V     NKA
Sbjct: 64  DIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVA----NKA 119

Query: 150 DLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
           +   + E   +   E         I  SA+   N++ + E +I
Sbjct: 120 ENLREFEREVKP--ELYSLGFGEPIPVSAEHNINLDTMLETII 160

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 39.7 bits (91), Expect = 6e-05
 Identities = 31/178 (17%), Positives = 49/178 (27%), Gaps = 25/178 (14%)

Query: 37  VLLGDSGVGKSCIVLRFVR------------------GQFDPTSKVTVGASFLSQTIALQ 78
           +  G S VGKS ++ R                        +       G  F+       
Sbjct: 4   IFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPKEV 63

Query: 79  DSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSP 138
                   +       +   +A L   G A   ++              + + L++   P
Sbjct: 64  QERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIP 123

Query: 139 DIVMALVGNKADLHEKREVPAQDGIEYAEKNGMF----FIETSAKTADNINQLFEVLI 192
            IV     NK D  +  +       E  E         FI  SAK  DNI +L   + 
Sbjct: 124 TIV---AVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIF 178

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} Length = 205

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 38.4 bits (88), Expect = 2e-04
 Identities = 24/115 (20%), Positives = 38/115 (33%), Gaps = 7/115 (6%)

Query: 84  KFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMA 143
           +    D  G E   A           A++V     P    + +     L   G  ++++ 
Sbjct: 87  RISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLII- 145

Query: 144 LVGNKADLHEKREVPAQDGIEYAEKNGMF-----FIETSAKTADNINQLFEVLIT 193
            V NK D+  K E  +Q         G +      I  SA    NI+ L E +  
Sbjct: 146 -VQNKVDVVSKEEALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEE 199

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 257

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 38.3 bits (88), Expect = 3e-04
 Identities = 31/196 (15%), Positives = 53/196 (27%), Gaps = 12/196 (6%)

Query: 14  QSGGLNNLENAGSSDAKNLRVKLVLLGDSGVGKSCIV------LRFVRGQFDPTSKVTVG 67
           Q+  L  L N    D  +L +  +++G  GVGKS  V             F       V 
Sbjct: 15  QTKLLELLGNLKQEDVNSLTI--LVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVM 72

Query: 68  ASFLSQTIALQDSTTVKFEIWDTAGQERYA-ALAPLYYRGAAVAVVVYDITSPDSFNKAQ 126
            S       L    T                  + L  +   V + V  + +    N  +
Sbjct: 73  VSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDK 132

Query: 127 YWVKELQKHGSPDIV--MALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAK-TADN 183
              K +       I     +    A       +P  +      +  +  + + A    D 
Sbjct: 133 LVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSKRSEALLQVVRSGASLKKDA 192

Query: 184 INQLFEVLITCTSSYC 199
                 V++   S  C
Sbjct: 193 QASDIPVVLIENSGRC 208

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 37.4 bits (85), Expect = 4e-04
 Identities = 24/163 (14%), Positives = 62/163 (38%), Gaps = 11/163 (6%)

Query: 37  VLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERY 96
            ++G   VGKS ++ + +  +   TS+     +   + + +      +    DT G    
Sbjct: 9   AIVGRPNVGKSTLLNKLLGQKISITSR--KAQTTRHRIVGIHTEGAYQAIYVDTPGLHME 66

Query: 97  AALA-------PLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKA 149
              A               V +V++ +         +  + +L++  +P I+   V    
Sbjct: 67  EKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILA--VNKVD 124

Query: 150 DLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 192
           ++ EK ++        ++ N +  +  SA+T  N++ +  ++ 
Sbjct: 125 NVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVR 167

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	200
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	100.0
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	100.0
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	100.0
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	100.0
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	100.0
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	100.0
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	100.0
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	100.0
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	100.0
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	100.0
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.98
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.97
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.97
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.97
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.97
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.97
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.96
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.94
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.93
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.93
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.92
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.92
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.91
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.91
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.91
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.91
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.9
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.9
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.9
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.89
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.88
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.87
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.87
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.87
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.87
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.86
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.85
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.84
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.84
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.83
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.82
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.76
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.74
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.74
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.72
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.68
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.68
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.65
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.64
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.63
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.62
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.6
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.45
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	99.44
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	99.33
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	99.3
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	99.26
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	99.23
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	99.16
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	99.12
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	99.02
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.71
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.59
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.47
d1okkd2	207	GTPase domain of the signal recognition particle r	98.39
d2qy9a2	211	GTPase domain of the signal recognition particle r	98.36
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.35
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.34
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	98.27
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.22
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.21
d1j8yf2	211	GTPase domain of the signal sequence recognition p	98.19
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.16
d1ls1a2	207	GTPase domain of the signal sequence recognition p	98.1
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.96
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.94
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.84
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.81
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.72
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.69
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.67
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.65
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.65
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.64
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.63
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.62
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.6
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.57
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.56
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.53
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.5
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	97.46
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.46
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.45
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.38
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.37
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.36
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.35
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	97.35
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.33
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.32
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	97.29
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.29
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.29
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.29
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.28
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	97.27
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	97.26
d2awna2	232	Maltose transport protein MalK, N-terminal domain	97.25
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	97.25
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.25
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.24
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.23
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	97.22
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	97.22
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	97.21
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	97.19
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	97.18
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.18
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	97.18
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	97.17
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.16
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.16
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	97.13
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.12
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.12
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	97.11
d1g2912	240	Maltose transport protein MalK, N-terminal domain	97.11
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.1
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	97.08
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	97.08
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	97.07
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	97.02
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	97.02
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	97.02
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	97.0
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.98
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.97
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	96.96
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	96.93
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	96.92
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	96.92
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	96.92
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	96.86
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.85
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.85
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.84
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.84
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.83
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.82
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.81
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.72
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.69
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.68
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.64
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.63
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.62
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.62
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.55
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.55
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	96.54
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	96.52
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	96.51
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.47
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	96.27
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.24
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.22
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.14
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	96.09
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	96.03
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	96.0
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	95.99
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	95.93
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	95.91
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	95.86
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	95.85
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	95.83
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	95.81
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.8
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	95.77
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	95.75
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	95.7
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	95.67
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	95.61
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	95.57
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	95.57
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.57
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	95.57
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	95.52
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	95.51
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	95.5
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	95.41
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	95.38
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	95.37
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	95.31
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	95.26
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	95.06
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	94.99
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	94.96
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	94.95
d1tuea_	205	Replication protein E1 helicase domain {Human papi	94.87
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	94.82
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	94.75
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	94.54
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	94.5
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	94.44
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	94.41
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	94.41
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	94.41
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	94.35
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	93.77
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	93.65
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	93.55
d1xpua3	289	Transcription termination factor Rho, ATPase domai	93.53
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	93.41
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	92.86
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	92.28
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	92.09
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	91.9
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	91.2
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	90.92
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	90.61
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	89.73
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	89.51
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	89.33
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	88.96
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	88.62
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	88.43
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	88.22
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	88.01
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	87.94
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	87.68
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	87.64
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	86.39
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	85.75
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	85.7
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	84.83
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	84.28
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	84.15
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	84.12
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	83.6
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	82.72
d1eg7a_	549	Formyltetrahydrofolate synthetase {Moorella thermo	82.7
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	82.41
d1vmea1	148	ROO-like flavoprotein TM0755, C-terminal domain {T	82.24
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	81.77

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=5.5e-37  Score=212.94  Aligned_cols=167  Identities=37%  Similarity=0.647  Sum_probs=151.6

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA  110 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  110 (200)
                      ++.+||+|+|++|||||||+++|.++.+.+.+.++.+.+.....+.. ....+.+++||+||++++...+..+++.+|++
T Consensus         3 ~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~   81 (169)
T d3raba_           3 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYR-NDKRIKLQIWDTAGQERYRTITTAYYRGAMGF   81 (169)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGGHHHHHTTTTTCCEE
T ss_pred             CeEEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEe-ecceEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence            46789999999999999999999999988888888887777766666 44558999999999999999999999999999


Q ss_pred             EEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Q 028986          111 VVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEV  190 (200)
Q Consensus       111 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~  190 (200)
                      |+|||+++++++..+..|+..+........|+++|+||+|+...+.+..+++..+++.+++++++|||++|.|++++|++
T Consensus        82 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~  161 (169)
T d3raba_          82 ILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFER  161 (169)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHCCSCCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEEEECccchhhhhhhhhhhhhhcccCCcceEEEEEeecccccccccchhhhHHHHHHcCCEEEEecCCCCcCHHHHHHH
Confidence            99999999999999999988888777788999999999999888888899999999999999999999999999999999


Q ss_pred             HHHhhccc
Q 028986          191 LITCTSSY  198 (200)
Q Consensus       191 i~~~~~~~  198 (200)
                      |++.+.++
T Consensus       162 l~~~i~ek  169 (169)
T d3raba_         162 LVDVICEK  169 (169)
T ss_dssp             HHHHHHTC
T ss_pred             HHHHHhhC
Confidence            99988764

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.6e-37  Score=212.94  Aligned_cols=165  Identities=44%  Similarity=0.719  Sum_probs=144.6

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEE
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAV  111 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i  111 (200)
                      +.+||+|+|++|||||||+++|..+.+...+.++.+.......... ++..+.+.+||++|++++..++..+++++|+++
T Consensus         2 y~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   80 (167)
T d1z08a1           2 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNI-GGKRVNLAIWDTAGQERFHALGPIYYRDSNGAI   80 (167)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEES-SSCEEEEEEEECCCC-------CCSSTTCSEEE
T ss_pred             ceEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeecc-CCccceeeeeccCCcceecccchhhccCCceeE
Confidence            5689999999999999999999999998888888888887776666 455589999999999999999999999999999


Q ss_pred             EEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Q 028986          112 VVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVL  191 (200)
Q Consensus       112 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i  191 (200)
                      +|||+++++|++.+..|+..+........|+++|+||+|+...++++.++++++++++++++++|||++|.||+++|.+|
T Consensus        81 ~v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~e~~~~a~~~~~~~~e~Sak~~~~v~e~F~~l  160 (167)
T d1z08a1          81 LVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDL  160 (167)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHH
T ss_pred             EEEeCCchhHHHhhhhhhhhcccccccccceeeeccccccccccccchHHHHHHHHHcCCeEEEEecCCCcCHHHHHHHH
Confidence            99999999999999999998877767788999999999998888899999999999999999999999999999999999


Q ss_pred             HHhhcc
Q 028986          192 ITCTSS  197 (200)
Q Consensus       192 ~~~~~~  197 (200)
                      ++.+.+
T Consensus       161 ~~~i~~  166 (167)
T d1z08a1         161 CKRMIE  166 (167)
T ss_dssp             HHHHHC
T ss_pred             HHHHhh
Confidence            988754

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.4e-36  Score=210.57  Aligned_cols=165  Identities=50%  Similarity=0.842  Sum_probs=151.6

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA  110 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  110 (200)
                      .+++||+|+|.+|||||||+++|..+.+.+.+.++.+.......... +.....+.+||++|++++..++..+++.+|++
T Consensus         2 ~k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~   80 (167)
T d1z0ja1           2 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQY-QNELHKFLIWDTAGLERFRALAPMYYRGSAAA   80 (167)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccc-cccccceeeeecCCchhhhHHHHHHHhhccce
Confidence            36789999999999999999999999999888888888876666655 44457899999999999999999999999999


Q ss_pred             EEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Q 028986          111 VVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEV  190 (200)
Q Consensus       111 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~  190 (200)
                      ++|||++++++++.+..|+..+........|+++|+||+|+.+.+.+..++++++++.++++|++|||++|.||+++|.+
T Consensus        81 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~nV~e~f~~  160 (167)
T d1z0ja1          81 IIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIE  160 (167)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEEeeechhhhhhhHHHhhhhhhhccCCcceEEEecccchhccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHH
Confidence            99999999999999999999988888889999999999999888889999999999999999999999999999999999


Q ss_pred             HHHhhc
Q 028986          191 LITCTS  196 (200)
Q Consensus       191 i~~~~~  196 (200)
                      |++++.
T Consensus       161 l~~~i~  166 (167)
T d1z0ja1         161 ISRRIP  166 (167)
T ss_dssp             HHHHCC
T ss_pred             HHHhCC
Confidence            999875

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.3e-37  Score=213.09  Aligned_cols=163  Identities=33%  Similarity=0.582  Sum_probs=148.2

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEE
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVV  112 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~  112 (200)
                      .+||+++|++|||||||+++|.++.+...+.++.+.+........ ++..+.+.+||++|++++...+..+++.+|++++
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~-~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   80 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQV-NDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVL   80 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEE-TTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeee-cCceeeeeeeccCCccchhhhhhhhhccCceEEE
Confidence            589999999999999999999999988888888888776666655 5556899999999999999999999999999999


Q ss_pred             EEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Q 028986          113 VYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI  192 (200)
Q Consensus       113 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~  192 (200)
                      |||++++++++.+..|++.+.+. ..++|+++|+||+|+.+.+++..++++++++.++++++++||++|.|++++|++|+
T Consensus        81 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~iilVgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~  159 (164)
T d1z2aa1          81 VFSTTDRESFEAISSWREKVVAE-VGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLA  159 (164)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHH-HCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHH
T ss_pred             EEeccchhhhhhccccccccccc-CCCceEEEeeccCCcccceeeeehhhHHHHHHcCCEEEEeccCCCcCHHHHHHHHH
Confidence            99999999999999999998776 45789999999999988888899999999999999999999999999999999999


Q ss_pred             Hhhcc
Q 028986          193 TCTSS  197 (200)
Q Consensus       193 ~~~~~  197 (200)
                      +++.+
T Consensus       160 ~~~lq  164 (164)
T d1z2aa1         160 EKHLQ  164 (164)
T ss_dssp             HHHHC
T ss_pred             HHHhC
Confidence            88753

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-36  Score=210.72  Aligned_cols=166  Identities=42%  Similarity=0.774  Sum_probs=151.2

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA  110 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  110 (200)
                      +..+||+|+|++|||||||+++|..+.+...+.++.+.++....+.+. +..+++.+|||+|++++...+..+++++|++
T Consensus         3 ~~~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~   81 (171)
T d2ew1a1           3 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIN-GEKVKLQIWDTAGQERFRSITQSYYRSANAL   81 (171)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEET-TEEEEEEEEEECCSGGGHHHHGGGSTTCSEE
T ss_pred             CEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEEC-CEEEEEEEEECCCchhhHHHHHHHHhccceE
Confidence            567899999999999999999999999888888888888877777764 4558999999999999999999999999999


Q ss_pred             EEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Q 028986          111 VVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEV  190 (200)
Q Consensus       111 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~  190 (200)
                      ++|+|++++.+++.+..|+..+.+.....+|+++|+||+|+....++..++++.+++.+++++++|||++|.||+++|.+
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ilvgnK~D~~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gV~e~f~~  161 (171)
T d2ew1a1          82 ILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLD  161 (171)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred             EEeeecccchhhhhhhhhhhhhcccccccccEEEEEeecccccccchhhhHHHHHHHhCCCEEEEEccCCCCCHHHHHHH
Confidence            99999999999999999999988777778999999999999887888889999999999999999999999999999999


Q ss_pred             HHHhhcc
Q 028986          191 LITCTSS  197 (200)
Q Consensus       191 i~~~~~~  197 (200)
                      |++++.+
T Consensus       162 l~~~l~~  168 (171)
T d2ew1a1         162 LACRLIS  168 (171)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8877643

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-36  Score=209.33  Aligned_cols=162  Identities=43%  Similarity=0.769  Sum_probs=148.2

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV  113 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v  113 (200)
                      +||+|+|.+|||||||+++|.++.+...+.++.+.......... ++..+.+.+||++|++.+...+..++..+|++++|
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv   79 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYL-EDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVV   79 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEC-SSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeecc-CCCceeeeecccCCcchhccchHHHhhccceEEEe
Confidence            58999999999999999999999998888888877776666555 45568999999999999999999999999999999


Q ss_pred             EeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Q 028986          114 YDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT  193 (200)
Q Consensus       114 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~  193 (200)
                      ||++++.+++.+..|+..+......++|+++|+||+|+.+.+....+++.++++.+++++++|||++|.||+++|++|++
T Consensus        80 ~d~~~~~s~~~i~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~v~e~f~~i~~  159 (164)
T d1yzqa1          80 YDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAA  159 (164)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred             eccccccchhhhHhhHHHHHHhcCCCceEEEEecccchhhhhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHHHHHH
Confidence            99999999999999999988777788999999999999888888889999999999999999999999999999999999


Q ss_pred             hhc
Q 028986          194 CTS  196 (200)
Q Consensus       194 ~~~  196 (200)
                      ++.
T Consensus       160 ~l~  162 (164)
T d1yzqa1         160 ALP  162 (164)
T ss_dssp             HSC
T ss_pred             hhC
Confidence            874

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3e-36  Score=208.62  Aligned_cols=164  Identities=38%  Similarity=0.724  Sum_probs=150.3

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA  110 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  110 (200)
                      ++.+||+|+|++|||||||+++|.++.+...+.++...+........ ++..+++.+||++|++.+...+..+++.+|++
T Consensus         2 ~y~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~   80 (166)
T d1z0fa1           2 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEV-SGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA   80 (166)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEE-TTEEEEEEEEECTTGGGTCHHHHHHHHTCSEE
T ss_pred             cEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEE-CCEEEEEEEeccCCchhHHHHHHHHhcCCcEE
Confidence            45789999999999999999999999988888888888877777666 45558999999999999999999999999999


Q ss_pred             EEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Q 028986          111 VVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEV  190 (200)
Q Consensus       111 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~  190 (200)
                      ++|||++++++++.+..|+..+........|+++++||.|+........+++..+++.+++++++|||++|.||+++|.+
T Consensus        81 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Saktg~~v~e~f~~  160 (166)
T d1z0fa1          81 LMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLE  160 (166)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEeccCchHHHHHHHHHHHHHHhhccccceEEEEcccccchhhcccHHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999998887888999999999999888888889999999999999999999999999999999


Q ss_pred             HHHhh
Q 028986          191 LITCT  195 (200)
Q Consensus       191 i~~~~  195 (200)
                      |++++
T Consensus       161 i~~~i  165 (166)
T d1z0fa1         161 AAKKI  165 (166)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            99875

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=100.00  E-value=2.5e-36  Score=209.37  Aligned_cols=165  Identities=32%  Similarity=0.517  Sum_probs=144.7

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEE
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAV  111 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i  111 (200)
                      +-+||+|+|++|||||||+++|+.+.+...+.++.+..+. ..+.+ ++..+.+.+||++|++++...+..+++++|+++
T Consensus         3 ~~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~-~~~~~-~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~i   80 (168)
T d1u8za_           3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVL-DGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL   80 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE-EEEEE-TTEEEEEEEEECCC---CHHHHHHHHHHCSEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccCCccccccc-ccccc-ccccccccccccccccchhhhhhhcccccceeE
Confidence            3579999999999999999999999988888888776653 34444 566699999999999999899999999999999


Q ss_pred             EEEeCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Q 028986          112 VVYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEV  190 (200)
Q Consensus       112 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~  190 (200)
                      +|||++++.+++.+..|+..+.+.. ..++|+++|+||+|+.+.++++.++++++++.+++++++|||++|.|++++|++
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~  160 (168)
T d1u8za_          81 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFD  160 (168)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEeeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHH
Confidence            9999999999999999999887643 568999999999999888888999999999999999999999999999999999


Q ss_pred             HHHhhccc
Q 028986          191 LITCTSSY  198 (200)
Q Consensus       191 i~~~~~~~  198 (200)
                      |++.+.++
T Consensus       161 l~~~i~~r  168 (168)
T d1u8za_         161 LMREIRAR  168 (168)
T ss_dssp             HHHHHHTC
T ss_pred             HHHHHHCc
Confidence            99988764

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-36  Score=208.78  Aligned_cols=165  Identities=30%  Similarity=0.461  Sum_probs=147.1

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA  110 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  110 (200)
                      .+.+||+|+|++|||||||+++|+++.+...+.++.+..+. ..+.+ ++..+.+.+||++|.+.+..++..++..+|++
T Consensus         2 ~k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~-~~~~~-~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~   79 (167)
T d1xtqa1           2 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITV-NGQEYHLQLVDTAGQDEYSIFPQTYSIDINGY   79 (167)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEE-EEEEE-TTEEEEEEEEECCCCCTTCCCCGGGTSSCCEE
T ss_pred             CcceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceecccc-eEEec-CcEEEEeeecccccccccccccchhhhhhhhh
Confidence            45689999999999999999999999888888888777653 44444 56668999999999999999999999999999


Q ss_pred             EEEEeCCCHHhHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Q 028986          111 VVVYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFE  189 (200)
Q Consensus       111 i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~  189 (200)
                      |+|||++++++++.+..|+..+.+. ...++|+++|+||+|+...++++.+++.+++++++++|++|||++|.||+++|+
T Consensus        80 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~  159 (167)
T d1xtqa1          80 ILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFR  159 (167)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHH
T ss_pred             hhhcccchhhhhhhhhhhhhhhhhcccccccceeeeccccccccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHH
Confidence            9999999999999999999888664 356799999999999988888999999999999999999999999999999999


Q ss_pred             HHHHhhcc
Q 028986          190 VLITCTSS  197 (200)
Q Consensus       190 ~i~~~~~~  197 (200)
                      .|++.+.+
T Consensus       160 ~li~~~~K  167 (167)
T d1xtqa1         160 RIILEAEK  167 (167)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHhcC
Confidence            99988753

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.3e-36  Score=209.73  Aligned_cols=168  Identities=30%  Similarity=0.530  Sum_probs=147.8

Q ss_pred             CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCcc
Q 028986           29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAA  108 (200)
Q Consensus        29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d  108 (200)
                      +..+.+||+|+|++|||||||+++|+++.+...+.++..... ...+.+ ++..+.+.+||++|++++...+..+++.+|
T Consensus         2 ~~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~-~~~~~~-~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~   79 (173)
T d2fn4a1           2 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSY-TKICSV-DGIPARLDILDTAGQEEFGAMREQYMRAGH   79 (173)
T ss_dssp             CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEE-EEEEEE-TTEEEEEEEEECCCTTTTSCCHHHHHHHCS
T ss_pred             CCCCeEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccce-eeEecc-CCeeeeeeccccccccccccccchhhccce
Confidence            345679999999999999999999999988877776654333 445555 556689999999999999999999999999


Q ss_pred             EEEEEEeCCCHHhHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHH
Q 028986          109 VAVVVYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQL  187 (200)
Q Consensus       109 ~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~  187 (200)
                      ++|+|||++++.+++.+..|+..+.+. ...++|+++|+||+|+...+....+++..+++.+++++++|||++|.||+++
T Consensus        80 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~  159 (173)
T d2fn4a1          80 GFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEA  159 (173)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred             eeeeecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechhhccccchhhhhHHHHhcCCEEEEEeCCCCcCHHHH
Confidence            999999999999999999999987654 3568999999999999887888899999999999999999999999999999


Q ss_pred             HHHHHHhhccc
Q 028986          188 FEVLITCTSSY  198 (200)
Q Consensus       188 ~~~i~~~~~~~  198 (200)
                      |++|++.+.++
T Consensus       160 f~~l~~~i~k~  170 (173)
T d2fn4a1         160 FEQLVRAVRKY  170 (173)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988764

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=8.6e-36  Score=206.85  Aligned_cols=165  Identities=32%  Similarity=0.493  Sum_probs=146.6

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEE
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAV  111 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i  111 (200)
                      +.+||+++|+++||||||++++.++.+.+.+.++.+..+ ...+.. ++..+.+.+||++|++.+...+..+++.+|+++
T Consensus         3 pt~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~l   80 (169)
T d1x1ra1           3 PTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSY-LKHTEI-DNQWAILDVLDTAGQEEFSAMREQYMRTGDGFL   80 (169)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEE-EEEEEE-TTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEE
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeecc-cccccc-ccccccccccccccccccccchhhhhhhccEEE
Confidence            468999999999999999999999998888777776555 334444 556689999999999999999999999999999


Q ss_pred             EEEeCCCHHhHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCC-CHHHHHH
Q 028986          112 VVYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTAD-NINQLFE  189 (200)
Q Consensus       112 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~-~i~~~~~  189 (200)
                      +|||++++.|++.+..|+..+.+. ...++|+++|+||+|+...++++.+++.++++.++++++++||+++. ||+++|.
T Consensus        81 lv~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~Sak~~~~nV~~~F~  160 (169)
T d1x1ra1          81 IVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFH  160 (169)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHH
T ss_pred             EecccccchhhhccchhhHHHHhhccccCccEEEEecccchhhhceeehhhHHHHHHHcCCEEEEEcCCCCCcCHHHHHH
Confidence            999999999999999999998665 35689999999999999888899999999999999999999999886 9999999


Q ss_pred             HHHHhhccc
Q 028986          190 VLITCTSSY  198 (200)
Q Consensus       190 ~i~~~~~~~  198 (200)
                      .|++.+.++
T Consensus       161 ~l~~~i~~~  169 (169)
T d1x1ra1         161 DLVRVIRQQ  169 (169)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHhC
Confidence            999988753

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.5e-36  Score=208.12  Aligned_cols=162  Identities=30%  Similarity=0.399  Sum_probs=129.1

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV  113 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v  113 (200)
                      +||+|+|++|||||||+++|.+..+... .++....+ ...+.+ ++..+.+.+||++|++.+...+..+++.+|++|+|
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~~~~~~~-~~~~~~~~-~~~i~~-~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv   78 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGGVEDGPE-AEAAGHTY-DRSIVV-DGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV   78 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC----------CEEE-EEEEEE-TTEEEEEEEEECC-------CHHHHHTSCSEEEEE
T ss_pred             eEEEEECCCCcCHHHHHHHHhCCccCCc-CCeeeeee-cceeec-cccccceeeeecccccccceecccchhhhhhhcee
Confidence            6999999999999999999998765443 33333333 444544 56669999999999999999999999999999999


Q ss_pred             EeCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Q 028986          114 YDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI  192 (200)
Q Consensus       114 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~  192 (200)
                      ||++++.+++.+..|+..+.... ...+|+++|+||+|+...+++...+++++++.+++++++|||++|.|++++|++|+
T Consensus        79 ~d~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~~f~~l~  158 (168)
T d2gjsa1          79 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV  158 (168)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHH
T ss_pred             ccccccccccccccccchhhcccccccceEEEeecccchhhhcchhHHHHHHHHHhcCCEEEEEeCCCCcCHHHHHHHHH
Confidence            99999999999999999987654 56789999999999988888899999999999999999999999999999999999


Q ss_pred             Hhhccc
Q 028986          193 TCTSSY  198 (200)
Q Consensus       193 ~~~~~~  198 (200)
                      +.+.++
T Consensus       159 ~~i~~~  164 (168)
T d2gjsa1         159 RQIRLR  164 (168)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            887654

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-36  Score=210.44  Aligned_cols=165  Identities=30%  Similarity=0.455  Sum_probs=144.7

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEE
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAV  111 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i  111 (200)
                      +.+||+|+|++|||||||+++|+++.+...+.++.+..+.. .... ++..+.+.+||++|++.+...+..+++.+|+++
T Consensus         1 n~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~~~-~~~~-~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~i   78 (171)
T d2erxa1           1 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQ-VISC-DKSICTLQITDTTGSHQFPAMQRLSISKGHAFI   78 (171)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEE-EEEE-TTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeecccc-ceee-ccccceeccccccccccccccccccccceeEEE
Confidence            46899999999999999999999999888888887765533 3333 566689999999999999999999999999999


Q ss_pred             EEEeCCCHHhHHHHHHHHHHHHHc--CCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Q 028986          112 VVYDITSPDSFNKAQYWVKELQKH--GSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFE  189 (200)
Q Consensus       112 ~v~d~~~~~s~~~~~~~~~~i~~~--~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~  189 (200)
                      +|||++++++++.+..|+..+.+.  ...++|+++|+||+|+...+++..++++++++.+++++++|||++|.||+++|+
T Consensus        79 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak~~~~v~e~f~  158 (171)
T d2erxa1          79 LVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQ  158 (171)
T ss_dssp             EEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred             EEeecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHH
Confidence            999999999999999998887653  246789999999999988888999999999999999999999999999999999


Q ss_pred             HHHHhhccc
Q 028986          190 VLITCTSSY  198 (200)
Q Consensus       190 ~i~~~~~~~  198 (200)
                      .|++.+.++
T Consensus       159 ~l~~~~~~~  167 (171)
T d2erxa1         159 ELLNLEKRR  167 (171)
T ss_dssp             HHHHTCCSS
T ss_pred             HHHHHHHHh
Confidence            999988765

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-35  Score=206.17  Aligned_cols=165  Identities=59%  Similarity=0.949  Sum_probs=151.2

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEE
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAV  111 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i  111 (200)
                      -.+||+|+|++|||||||+++|..+.+...+.++.+.......... .+..+.+.+||++|++.+...+..+++++|+++
T Consensus         5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   83 (170)
T d1r2qa_           5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCL-DDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI   83 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEE-TTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeec-cceEEEEEeccCCCchhhhhhHHHHhhCcceEE
Confidence            3579999999999999999999999998888888888876666655 455589999999999999999999999999999


Q ss_pred             EEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Q 028986          112 VVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVL  191 (200)
Q Consensus       112 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i  191 (200)
                      +++|.+++++++.+..|+..+.+...+++|+++|+||+|+...+.++.++++++++.+++++++|||++|.||+++|++|
T Consensus        84 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~SAk~g~~V~e~f~~l  163 (170)
T d1r2qa_          84 VVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI  163 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEeccchhhHHHHHHHHhhhhhhccCCCceEEeecccccccccccccHHHHHHHHHhcCCEEEEeeCCCCCCHHHHHHHH
Confidence            99999999999999999999887778899999999999998888899999999999999999999999999999999999


Q ss_pred             HHhhcc
Q 028986          192 ITCTSS  197 (200)
Q Consensus       192 ~~~~~~  197 (200)
                      ++.+.+
T Consensus       164 ~~~i~~  169 (170)
T d1r2qa_         164 AKKLPK  169 (170)
T ss_dssp             HHTSCC
T ss_pred             HHHHhh
Confidence            998865

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-35  Score=206.52  Aligned_cols=168  Identities=38%  Similarity=0.668  Sum_probs=151.6

Q ss_pred             CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccE
Q 028986           30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAV  109 (200)
Q Consensus        30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~  109 (200)
                      .+..+||+|+|.+|||||||+++|..+.+.+.+.++.+.......+.. ++....+.+||++|++++...+..+++.+|+
T Consensus         2 ~~~~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~   80 (174)
T d2bmea1           2 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINV-GGKYVKLQIWDTAGQERFRSVTRSYYRGAAG   80 (174)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEE-TTEEEEEEEEEECCSGGGHHHHHTTSTTCSE
T ss_pred             ccEEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEe-cCcceeEEEEECCCchhhhhhHHHHhhhCCE
Confidence            356799999999999999999999999988888888887776665555 4556899999999999999999999999999


Q ss_pred             EEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Q 028986          110 AVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFE  189 (200)
Q Consensus       110 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~  189 (200)
                      +++|+|.++++++..+..|+..+......++|+++|+||+|+....+.....+.+++..++++++++||++|.|++++|.
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gi~e~f~  160 (174)
T d2bmea1          81 ALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFV  160 (174)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred             EEEEEecccchhHHHHhhhhcccccccCCceEEEEEEecccccchhchhhhHHHHHHHhCCCEEEEeeCCCCcCHHHHHH
Confidence            99999999999999999999998887788999999999999988888888899999999999999999999999999999


Q ss_pred             HHHHhhccc
Q 028986          190 VLITCTSSY  198 (200)
Q Consensus       190 ~i~~~~~~~  198 (200)
                      +|++.+.++
T Consensus       161 ~l~~~i~~~  169 (174)
T d2bmea1         161 QCARKILNK  169 (174)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999887553

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=8.4e-36  Score=207.69  Aligned_cols=167  Identities=40%  Similarity=0.721  Sum_probs=124.1

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA  110 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  110 (200)
                      ++-+||+|+|.++||||||+++|.++.+...+.++.+.++....+... +..+.+.+||+||++.+...+..+++.+|++
T Consensus         4 ~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~   82 (173)
T d2fu5c1           4 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFRTITTAYYRGAMGI   82 (173)
T ss_dssp             SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEET-TEEEEEEEEEC---------CCTTTTTCSEE
T ss_pred             cEEEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEEC-CEEEEEEEEECCCchhhHHHHHHhccCCCEE
Confidence            466899999999999999999999988888888888888877777774 4458999999999999999999999999999


Q ss_pred             EEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Q 028986          111 VVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEV  190 (200)
Q Consensus       111 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~  190 (200)
                      |+|||++++.+++.+..|+..+......+.|+++|+||.|+........+++..++...++++++|||++|.|++++|++
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~f~~  162 (173)
T d2fu5c1          83 MLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFT  162 (173)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHH
T ss_pred             EEEEECCChhhHHHHHHHHHHhhhhccCCceEEEEEecccchhhcccHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999998877888999999999999888888888889999999999999999999999999999


Q ss_pred             HHHhhccc
Q 028986          191 LITCTSSY  198 (200)
Q Consensus       191 i~~~~~~~  198 (200)
                      |++.+.++
T Consensus       163 l~~~i~~k  170 (173)
T d2fu5c1         163 LARDIKAK  170 (173)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99998765

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-35  Score=205.87  Aligned_cols=165  Identities=39%  Similarity=0.776  Sum_probs=145.5

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEE
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAV  111 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i  111 (200)
                      +.+||+|+|++|||||||+++|.++.+.+.+.++............ .+..+.+.+||++|++.+...+..++..+|+++
T Consensus         2 y~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i   80 (173)
T d2a5ja1           2 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNI-DGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL   80 (173)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEE-TTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEE
T ss_pred             eeEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeee-eeeEEEEEeecccCccchhhHHHHHhhccCEEE
Confidence            4589999999999999999999999988887777777776666555 455589999999999999999999999999999


Q ss_pred             EEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Q 028986          112 VVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVL  191 (200)
Q Consensus       112 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i  191 (200)
                      +|||++++.+++.+..|+..+.+....++|+++|+||+|+...+....+++..+++.++++++++||++|.||+++|.+|
T Consensus        81 lv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~a~~~~~~~~e~Sa~tg~~V~e~f~~i  160 (173)
T d2a5ja1          81 LVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINT  160 (173)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHH
T ss_pred             EEEeecChHHHHhHHHHHHHHHHhCCCCCeEEEEecCCchhhhhhhHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHH
Confidence            99999999999999999999888777899999999999998888888999999999999999999999999999999999


Q ss_pred             HHhhcc
Q 028986          192 ITCTSS  197 (200)
Q Consensus       192 ~~~~~~  197 (200)
                      ++.+.+
T Consensus       161 ~~~i~~  166 (173)
T d2a5ja1         161 AKEIYR  166 (173)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            987654

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9.9e-35  Score=205.73  Aligned_cols=168  Identities=39%  Similarity=0.692  Sum_probs=153.5

Q ss_pred             CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccE
Q 028986           30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAV  109 (200)
Q Consensus        30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~  109 (200)
                      .+..+||+|+|+++||||||+++|..+.+...+.++.+..+....+.+. +..+.+.+||++|++++..++..+++.+|+
T Consensus         3 ~~~~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~-~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~   81 (194)
T d2bcgy1           3 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELD-GKTVKLQIWDTAGQERFRTITSSYYRGSHG   81 (194)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEET-TEEEEEEEECCTTTTTTTCCCGGGGTTCSE
T ss_pred             CCEEEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEe-eEEEEEEEEECCCchhhHHHHHHHhccCCE
Confidence            4667999999999999999999999999888888888888877777664 445899999999999999999999999999


Q ss_pred             EEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Q 028986          110 AVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFE  189 (200)
Q Consensus       110 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~  189 (200)
                      +|+|||+++++++..+..|+..+.+....++|+++|+||.|+.+...+..++...++...+++++++||++|.|++++|+
T Consensus        82 ~i~v~d~t~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~gi~e~f~  161 (194)
T d2bcgy1          82 IIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFL  161 (194)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHH
T ss_pred             EEEEEeCcchhhhhhHhhhhhhhhhcccCCceEEEEEeccccccccchhHHHHhhhhhccCcceEEEecCcCccHHHHHH
Confidence            99999999999999999999988877788999999999999998888999999999999999999999999999999999


Q ss_pred             HHHHhhccc
Q 028986          190 VLITCTSSY  198 (200)
Q Consensus       190 ~i~~~~~~~  198 (200)
                      +|++.+.+.
T Consensus       162 ~l~~~i~~~  170 (194)
T d2bcgy1         162 TMARQIKES  170 (194)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999887653

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.2e-35  Score=203.98  Aligned_cols=165  Identities=45%  Similarity=0.777  Sum_probs=146.7

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA  110 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  110 (200)
                      ++.+||+|+|++|||||||+++|.++.+...+.++.+.......+.. ++..+.+.+||++|++.+...+..+++.+|++
T Consensus         2 ~~~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~   80 (175)
T d2f9la1           2 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV-DGKTIKAQIWDTAGQERYRRITSAYYRGAVGA   80 (175)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEE-TTEEEEEEEEECSSGGGTTCCCHHHHTTCSEE
T ss_pred             CEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEE-CCEEEEEEecccCCcHHHHHHHHHHhhccCeE
Confidence            45689999999999999999999999988888887877777777666 45558999999999999999999999999999


Q ss_pred             EEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Q 028986          111 VVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEV  190 (200)
Q Consensus       111 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~  190 (200)
                      |+|||.+++.++..+..|+..+.+....++|+++|+||+|+.+.+....+....+...++.++++|||++|.|++++|++
T Consensus        81 i~v~d~~~~~S~~~~~~~~~~i~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~i~e~f~~  160 (175)
T d2f9la1          81 LLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKN  160 (175)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEEECCCcccchhHHHHHHHHHHhcCCCCcEEEEEeeecccccccchHHHHHHhhcccCceEEEEecCCCcCHHHHHHH
Confidence            99999999999999999999998887888999999999999877777778888888899999999999999999999999


Q ss_pred             HHHhhc
Q 028986          191 LITCTS  196 (200)
Q Consensus       191 i~~~~~  196 (200)
                      |++.+.
T Consensus       161 l~~~i~  166 (175)
T d2f9la1         161 ILTEIY  166 (175)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998764

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.2e-35  Score=205.72  Aligned_cols=164  Identities=27%  Similarity=0.559  Sum_probs=140.3

Q ss_pred             CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCcc
Q 028986           29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAA  108 (200)
Q Consensus        29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d  108 (200)
                      +....+||+|+|++|||||||+++|+.+.+...+.++.+... ...+.. ++..+.+.+||++|++.+...+..+++.+|
T Consensus         5 ~~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~~~~-~~~~~~-~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~   82 (185)
T d2atxa1           5 PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTV-GGKQYLLGLYDTAGQEDYDRLRPLSYPMTD   82 (185)
T ss_dssp             CEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEES-SSCEEEEEEECCCCSSSSTTTGGGGCTTCS
T ss_pred             CCCcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCceeeee-eEEEee-CCceEEeecccccccchhhhhhhhcccccc
Confidence            457789999999999999999999999998888888776443 444444 556689999999999999999999999999


Q ss_pred             EEEEEEeCCCHHhHHHHH-HHHHHHHHcCCCCCeEEEEEeCCCCCC------------CCcCCHHHHHHHHHHcC-CeEE
Q 028986          109 VAVVVYDITSPDSFNKAQ-YWVKELQKHGSPDIVMALVGNKADLHE------------KREVPAQDGIEYAEKNG-MFFI  174 (200)
Q Consensus       109 ~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~------------~~~~~~~~~~~~~~~~~-~~~~  174 (200)
                      ++++|||+++++||+.+. .|+..++.. ..++|+++|+||+|+..            .+.++.+++.++++.++ ++|+
T Consensus        83 ~~ilv~d~t~~~Sf~~~~~~~~~~~~~~-~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~~~~~  161 (185)
T d2atxa1          83 VFLICFSVVNPASFQNVKEEWVPELKEY-APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYV  161 (185)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHHHHH-STTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEE
T ss_pred             eeeeccccchHHHHHHHHHHHHHHHHhc-CCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcCCCEEE
Confidence            999999999999998775 455555554 66899999999999864            35678899999999887 6899


Q ss_pred             EecCCCCCCHHHHHHHHHHhh
Q 028986          175 ETSAKTADNINQLFEVLITCT  195 (200)
Q Consensus       175 ~~S~~~~~~i~~~~~~i~~~~  195 (200)
                      +|||++|.||+++|+.+++++
T Consensus       162 E~SAk~~~gv~e~F~~li~~i  182 (185)
T d2atxa1         162 ECSALTQKGLKTVFDEAIIAI  182 (185)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHH
T ss_pred             EecCCCCcCHHHHHHHHHHHH
Confidence            999999999999999998876

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-34  Score=200.58  Aligned_cols=167  Identities=37%  Similarity=0.684  Sum_probs=139.7

Q ss_pred             CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCC-ccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCcc
Q 028986           30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTS-KVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAA  108 (200)
Q Consensus        30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d  108 (200)
                      .+..+||+|+|+++||||||+++|+.+.+.... .++.+.+.....+.. ++..+++.+|||+|++.+...+..+++++|
T Consensus         3 ~d~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d   81 (170)
T d2g6ba1           3 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDV-DGVKVKLQMWDTAGQERFRSVTHAYYRDAH   81 (170)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEE-TTEEEEEEEEECCCC--------CCGGGCS
T ss_pred             CceEEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEe-cCcEEEEEEEECCCchhhHHHHHHhhcCCc
Confidence            467789999999999999999999998875443 444556665555555 455589999999999999999999999999


Q ss_pred             EEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Q 028986          109 VAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF  188 (200)
Q Consensus       109 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~  188 (200)
                      ++++|||++++.++..+..|+..+........|+++|+||.|+.....+..+++..+++.++++++++||++|.|++++|
T Consensus        82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~d~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f  161 (170)
T d2g6ba1          82 ALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAF  161 (170)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHH
T ss_pred             eeEEEecCCcccchhhhhhhhhhhhhccCCCceEEEEEeeechhhcccccHHHHHHHHHHcCCEEEEEeCCCCcCHHHHH
Confidence            99999999999999999999888877767789999999999998888899999999999999999999999999999999


Q ss_pred             HHHHHhhcc
Q 028986          189 EVLITCTSS  197 (200)
Q Consensus       189 ~~i~~~~~~  197 (200)
                      ++|++.+.+
T Consensus       162 ~~l~~~i~k  170 (170)
T d2g6ba1         162 TAIAKELKR  170 (170)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHcCC
Confidence            999998753

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-35  Score=204.61  Aligned_cols=165  Identities=28%  Similarity=0.536  Sum_probs=141.9

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEE
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAV  111 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i  111 (200)
                      .++||+|+|++|||||||+++|+.+.+...+.++.+... ...+.+ ++..+.+.+||++|.+++...+..+++.+|+++
T Consensus         4 ~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~-~~~~~~-~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   81 (171)
T d2erya1           4 EKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCVI-DDRAARLDILDTAGQEEFGAMREQYMRTGEGFL   81 (171)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEEE-EEEEEE-TTEEEEEEEEECC----CCHHHHHHHHHCSEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccccce-eeeeee-cccccccccccccccccccccccccccccceEE
Confidence            358999999999999999999999988877777766444 445555 556689999999999999999999999999999


Q ss_pred             EEEeCCCHHhHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Q 028986          112 VVYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEV  190 (200)
Q Consensus       112 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~  190 (200)
                      +|||.+++.+++.+..|+..+.+. .....|+++|+||+|+...+.+..+++.++++.++++|++|||++|.||+++|..
T Consensus        82 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~i~e~f~~  161 (171)
T d2erya1          82 LVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHE  161 (171)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSCSSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred             EeeccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhhhccchHHHHHHHHHHcCCEEEEEcCCCCcCHHHHHHH
Confidence            999999999999999999876554 3567899999999999888889999999999999999999999999999999999


Q ss_pred             HHHhhccc
Q 028986          191 LITCTSSY  198 (200)
Q Consensus       191 i~~~~~~~  198 (200)
                      |++.+.++
T Consensus       162 l~~~i~k~  169 (171)
T d2erya1         162 LVRVIRKF  169 (171)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99988754

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-35  Score=207.74  Aligned_cols=168  Identities=35%  Similarity=0.634  Sum_probs=148.1

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecC---------CcEEEEEEEeCCChhhhhhccc
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQD---------STTVKFEIWDTAGQERYAALAP  101 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~D~~g~~~~~~~~~  101 (200)
                      +..+||+|+|++|||||||+++|+++.+...+.++.+..+....+.+.+         +..+.+.+||++|++++...+.
T Consensus         3 d~~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~~   82 (186)
T d2f7sa1           3 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTT   82 (186)
T ss_dssp             SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHH
T ss_pred             CEEEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHHH
Confidence            5678999999999999999999999998888777777776666655432         2346899999999999999999


Q ss_pred             ccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCC
Q 028986          102 LYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKT  180 (200)
Q Consensus       102 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~  180 (200)
                      .+++++|++|+|||++++.+++.+..|+..+.... ...+|+++|+||.|+...+++..+++.++++.+++++++|||++
T Consensus        83 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak~  162 (186)
T d2f7sa1          83 AFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAAT  162 (186)
T ss_dssp             HHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTTT
T ss_pred             HHHhcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccchhhhcchHHHHHHHHHHcCCEEEEEeCCC
Confidence            99999999999999999999999999988776543 55688999999999988888999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHhhccc
Q 028986          181 ADNINQLFEVLITCTSSY  198 (200)
Q Consensus       181 ~~~i~~~~~~i~~~~~~~  198 (200)
                      |.|++++|++|++.+.++
T Consensus       163 ~~~i~e~f~~l~~~i~~k  180 (186)
T d2f7sa1         163 GQNVEKAVETLLDLIMKR  180 (186)
T ss_dssp             TBTHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHH
Confidence            999999999999987654

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-35  Score=204.10  Aligned_cols=163  Identities=34%  Similarity=0.446  Sum_probs=140.8

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEE
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVV  112 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~  112 (200)
                      ++||+++|++|||||||+++|+.+.+...+.++.+..+... +. .++..+.+.+||++|++.+. ....+++.+|++++
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~~-~~-~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~il   78 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQ-AT-IDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVL   78 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEE-EE-ETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceecccccc-cc-ccccceEEEEeecccccccc-cchhhhccccccee
Confidence            58999999999999999999999999888888887776433 33 36667999999999987654 44567888999999


Q ss_pred             EEeCCCHHhHHHHHHHHHHHHH-cCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCC-CHHHHHHH
Q 028986          113 VYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTAD-NINQLFEV  190 (200)
Q Consensus       113 v~d~~~~~s~~~~~~~~~~i~~-~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~-~i~~~~~~  190 (200)
                      |||++++.+++.+..|+..+.. ....+.|+++|+||+|+...+.++.+++++++++++++|++|||++|. ||+++|..
T Consensus        79 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~Saktg~gnV~e~F~~  158 (168)
T d2atva1          79 VYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYE  158 (168)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHH
T ss_pred             ecccCCccchhhhhhhcccccccccccCcceeeeccchhhhhhccCcHHHHHHHHHHhCCeEEEEccccCCcCHHHHHHH
Confidence            9999999999999888776544 335689999999999998888899999999999999999999999998 59999999


Q ss_pred             HHHhhccc
Q 028986          191 LITCTSSY  198 (200)
Q Consensus       191 i~~~~~~~  198 (200)
                      |++.+.++
T Consensus       159 l~~~i~~~  166 (168)
T d2atva1         159 LCREVRRR  166 (168)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99988765

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.1e-34  Score=201.49  Aligned_cols=163  Identities=53%  Similarity=0.895  Sum_probs=148.2

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEE
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVV  112 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~  112 (200)
                      .+||+|+|++|||||||+++|..+.+...+.++.+..+....+.. ++..+.+.+||++|++.+..++..++..+|++++
T Consensus         3 ~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~-~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~il   81 (170)
T d1ek0a_           3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTI-NEHTVKFEIWDTAGQERFASLAPMYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEE-TTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeecccccc-ccccccccccccCCchhHHHHHHHHHhccceEEE
Confidence            689999999999999999999999998888888888887777665 4556899999999999999999999999999999


Q ss_pred             EEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCC---CCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Q 028986          113 VYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE---KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFE  189 (200)
Q Consensus       113 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~---~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~  189 (200)
                      |||++++.+++.+..|+..+........|+++|+||+|+.+   .+.+..+++.++++.++++|++|||++|.||+++|.
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gV~e~F~  161 (170)
T d1ek0a_          82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL  161 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred             EEeCCcccchhhhhhhhhhhccccccccceeeeecccccccccchhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHH
Confidence            99999999999999999888777777899999999999843   467888999999999999999999999999999999


Q ss_pred             HHHHhhc
Q 028986          190 VLITCTS  196 (200)
Q Consensus       190 ~i~~~~~  196 (200)
                      .|++++.
T Consensus       162 ~i~~~i~  168 (170)
T d1ek0a_         162 GIGEKIP  168 (170)
T ss_dssp             HHHTTSC
T ss_pred             HHHHHhc
Confidence            9998764

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.6e-35  Score=203.32  Aligned_cols=162  Identities=33%  Similarity=0.536  Sum_probs=144.0

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEE
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAV  111 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i  111 (200)
                      +++||+++|++|||||||+++|+++.+...+.++.+..+ ...... ++..+.+.+||++|++.+...+..+++++|+++
T Consensus         2 k~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~-~~~~~~-~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~i   79 (167)
T d1kaoa_           2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY-RKEIEV-DSSPSVLEILDTAGTEQFASMRDLYIKNGQGFI   79 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEE-TTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeeee-eeeeec-CcceEeeccccCCCccccccchHHHhhccccee
Confidence            578999999999999999999999998888777776544 344444 555689999999999998889999999999999


Q ss_pred             EEEeCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Q 028986          112 VVYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEV  190 (200)
Q Consensus       112 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~  190 (200)
                      +|||++++.+++.+..|+..+.... ..++|+++|+||+|+...+.+..+++..+++.+++++++|||++|.|++++|++
T Consensus        80 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~i~e~f~~  159 (167)
T d1kaoa_          80 LVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAE  159 (167)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHH
T ss_pred             eeeeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchhhcccchHHHHHHHHHHcCCeEEEECCCCCcCHHHHHHH
Confidence            9999999999999999998877643 567999999999999888888899999999999999999999999999999999


Q ss_pred             HHHhh
Q 028986          191 LITCT  195 (200)
Q Consensus       191 i~~~~  195 (200)
                      |++++
T Consensus       160 i~~~i  164 (167)
T d1kaoa_         160 IVRQM  164 (167)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99876

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.3e-35  Score=201.78  Aligned_cols=163  Identities=34%  Similarity=0.551  Sum_probs=144.2

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEE
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAV  111 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i  111 (200)
                      +.+||+|+|++|||||||+++|..+.+...+.++.+..+ ...+.. ++..+.+.+||++|++.+...+..+++.+|+++
T Consensus         2 r~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~-~~~~~~-~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   79 (167)
T d1c1ya_           2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEV-DCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFA   79 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEES-SSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCcccccc-ceeEEe-eeeEEEeccccccCcccccccccccccccceeE
Confidence            578999999999999999999999999888887777555 344444 556689999999999999999999999999999


Q ss_pred             EEEeCCCHHhHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHc-CCeEEEecCCCCCCHHHHHH
Q 028986          112 VVYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAEKN-GMFFIETSAKTADNINQLFE  189 (200)
Q Consensus       112 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~S~~~~~~i~~~~~  189 (200)
                      +|||++++.+++.+..|+..+.+. ...++|+++|+||+|+........+++..+++++ ++++++|||++|.||+++|+
T Consensus        80 lv~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~F~  159 (167)
T d1c1ya_          80 LVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFY  159 (167)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHH
T ss_pred             EeeeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcccccccchhHHHHHHHHhCCCEEEEEcCCCCcCHHHHHH
Confidence            999999999999999999987664 3568999999999999888888888889998874 78999999999999999999


Q ss_pred             HHHHhhc
Q 028986          190 VLITCTS  196 (200)
Q Consensus       190 ~i~~~~~  196 (200)
                      +|++++.
T Consensus       160 ~l~~~i~  166 (167)
T d1c1ya_         160 DLVRQIN  166 (167)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhc
Confidence            9998875

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.7e-36  Score=207.01  Aligned_cols=162  Identities=30%  Similarity=0.561  Sum_probs=138.5

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEE
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAV  111 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i  111 (200)
                      -.+||+++|++|||||||+++|+++.+...+.++.+.++....+.. ++..+.+.+||++|++.+...+..+++.+|+++
T Consensus         2 ~~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~-~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i   80 (170)
T d1i2ma_           2 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT-NRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAI   80 (170)
T ss_dssp             EEEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECB-TTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEE
T ss_pred             eeEEEEEECCCCcCHHHHHHHHHhCCCCcccccceecccccccccc-ccccccccccccccccccceecchhcccccchh
Confidence            3679999999999999999999999988888888888887766665 455589999999999999999999999999999


Q ss_pred             EEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Q 028986          112 VVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVL  191 (200)
Q Consensus       112 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i  191 (200)
                      +|||+++++|++.+..|+..+.+. ..++|+++|+||+|+......  ++...++...+++++++||++|.|++++|++|
T Consensus        81 lv~d~~~~~Sf~~~~~~~~~~~~~-~~~~piilvgnK~Dl~~~~~~--~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l  157 (170)
T d1i2ma_          81 IMFDVTSRVTYKNVPNWHRDLVRV-CENIPIVLCGNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWL  157 (170)
T ss_dssp             EEEETTSGGGGTTHHHHHHHHHHH-HCSCCEEEEEECCCCSCSCCT--TTSHHHHSSCSSEEEEEBTTTTBTTTHHHHHH
T ss_pred             hccccccccccchhHHHHHHHhhc-cCCCceeeecchhhhhhhhhh--hHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            999999999999999999988776 458999999999999765443  34567788889999999999999999999999


Q ss_pred             HHhhcc
Q 028986          192 ITCTSS  197 (200)
Q Consensus       192 ~~~~~~  197 (200)
                      ++.+.+
T Consensus       158 ~~~l~~  163 (170)
T d1i2ma_         158 ARKLIG  163 (170)
T ss_dssp             HHHHHT
T ss_pred             HHHHcc
Confidence            988754

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.6e-34  Score=200.79  Aligned_cols=162  Identities=34%  Similarity=0.567  Sum_probs=137.2

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEE
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVV  112 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~  112 (200)
                      +.||+|+|++|||||||+++|..+.+...+.++.+... ...... ++..+.+.+||++|++.+...+..+++++|++|+
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il   79 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEV-DGKQVELALWDTAGLEDYDRLRPLSYPDTDVILM   79 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEE-TTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeec-cccccc-cccceeeeccccCccchhcccchhhcccchhhhh
Confidence            57999999999999999999999998888877766444 333444 4556899999999999999999999999999999


Q ss_pred             EEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCC------------CcCCHHHHHHHHHHcCC-eEEEecCC
Q 028986          113 VYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK------------REVPAQDGIEYAEKNGM-FFIETSAK  179 (200)
Q Consensus       113 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~S~~  179 (200)
                      |||+++++||+.+..|+..+.....+++|+++|+||+|+...            +.+..+++..+++.++. +|++|||+
T Consensus        80 v~d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SAk  159 (177)
T d1kmqa_          80 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK  159 (177)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred             hcccchhHHHHHHHHHHHHHHHHhCCCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCcEEEEecCC
Confidence            999999999998866554443333678999999999999643            45778899999999875 89999999


Q ss_pred             CCCCHHHHHHHHHHhhc
Q 028986          180 TADNINQLFEVLITCTS  196 (200)
Q Consensus       180 ~~~~i~~~~~~i~~~~~  196 (200)
                      +|.||+++|+.|++.+.
T Consensus       160 t~~gi~e~F~~i~~~~l  176 (177)
T d1kmqa_         160 TKDGVREVFEMATRAAL  176 (177)
T ss_dssp             TCTTHHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHh
Confidence            99999999999998764

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.3e-34  Score=199.03  Aligned_cols=164  Identities=41%  Similarity=0.762  Sum_probs=143.5

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEE
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVV  112 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~  112 (200)
                      -+||+|+|.++||||||+++|+.+.+.+.+.++.+.++....+... +..+++.+||+||++.+...+..+++++|++++
T Consensus         2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~   80 (166)
T d1g16a_           2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDIN-GKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL   80 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESS-SCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEEC-CEEEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence            4799999999999999999999999988888999988888888774 555899999999999999999999999999999


Q ss_pred             EEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Q 028986          113 VYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI  192 (200)
Q Consensus       113 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~  192 (200)
                      |||.+++++++.+..|+..+........|++++++|.|+.. +....+++.+++..+++++++|||++|.|++++|++|+
T Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~e~f~~l~  159 (166)
T d1g16a_          81 VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA  159 (166)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTT-CCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHH
T ss_pred             EEECCCccCHHHHHhhhhhhhccccCcceeeeecchhhhhh-hhhhHHHHHHHHHhcCCeEEEECCCCCCCHHHHHHHHH
Confidence            99999999999999999988888788899999999999754 45668889999999999999999999999999999999


Q ss_pred             Hhhccc
Q 028986          193 TCTSSY  198 (200)
Q Consensus       193 ~~~~~~  198 (200)
                      +.+.++
T Consensus       160 ~~i~~k  165 (166)
T d1g16a_         160 KLIQEK  165 (166)
T ss_dssp             HHHHHT
T ss_pred             HHHHhc
Confidence            998875

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.8e-34  Score=200.26  Aligned_cols=166  Identities=34%  Similarity=0.636  Sum_probs=133.8

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEE
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVV  112 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~  112 (200)
                      -+||+|+|++|||||||+++|+++.+.+.+.++.+...........+.....+.+||++|++.+...+..+++.+|++++
T Consensus         2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   81 (175)
T d1ky3a_           2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVL   81 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEEE
Confidence            58999999999999999999999998888888887777777777666666889999999999999999999999999999


Q ss_pred             EEeCCCHHhHHHHHHHHHHHHHc----CCCCCeEEEEEeCCCCCCCC-cCCHHHHHHHHHHcC-CeEEEecCCCCCCHHH
Q 028986          113 VYDITSPDSFNKAQYWVKELQKH----GSPDIVMALVGNKADLHEKR-EVPAQDGIEYAEKNG-MFFIETSAKTADNINQ  186 (200)
Q Consensus       113 v~d~~~~~s~~~~~~~~~~i~~~----~~~~~p~iiv~nK~D~~~~~-~~~~~~~~~~~~~~~-~~~~~~S~~~~~~i~~  186 (200)
                      +||++++.+++.+..|+..+...    ....+|+++|+||+|+.+.+ .+..++++++++.++ +++++|||++|.|+++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~gv~e  161 (175)
T d1ky3a_          82 VYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDT  161 (175)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHH
T ss_pred             EeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHHHHHHHcCCCeEEEEeCCCCcCHHH
Confidence            99999999999999999887653    23578999999999997653 467788899998885 7899999999999999


Q ss_pred             HHHHHHHhhccc
Q 028986          187 LFEVLITCTSSY  198 (200)
Q Consensus       187 ~~~~i~~~~~~~  198 (200)
                      +|++|++.+.++
T Consensus       162 ~f~~l~~~~l~~  173 (175)
T d1ky3a_         162 AFEEIARSALQQ  173 (175)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc
Confidence            999999877654

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4e-34  Score=197.86  Aligned_cols=163  Identities=33%  Similarity=0.533  Sum_probs=143.5

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEE
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAV  111 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i  111 (200)
                      +++||+|+|+++||||||+++|+++.+...+.++.+..+... +.. ++..+.+.+||++|.+.+...+..+++.+++++
T Consensus         2 ~e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~i   79 (166)
T d1ctqa_           2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVI-DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL   79 (166)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEE-EEE-TTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeeccc-eee-eceeeeeeeeeccCccccccchhhhhhcccccc
Confidence            468999999999999999999999998887777777665433 333 455689999999999999999999999999999


Q ss_pred             EEEeCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Q 028986          112 VVYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEV  190 (200)
Q Consensus       112 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~  190 (200)
                      +|+|++++.+++.+..|+..+.+.. ..++|+++|+||+|+. .+.+..+++.++++.+++++++|||++|.||+++|.+
T Consensus        80 iv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~  158 (166)
T d1ctqa_          80 CVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYT  158 (166)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCS-CCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred             eeecccccccHHHHHHHHHHHHHhcCCCCCeEEEEecccccc-cccccHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHHH
Confidence            9999999999999999999987654 4579999999999985 4567788999999999999999999999999999999


Q ss_pred             HHHhhcc
Q 028986          191 LITCTSS  197 (200)
Q Consensus       191 i~~~~~~  197 (200)
                      |++.+.+
T Consensus       159 i~~~i~~  165 (166)
T d1ctqa_         159 LVREIRQ  165 (166)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHh
Confidence            9998865

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-33  Score=195.92  Aligned_cols=166  Identities=45%  Similarity=0.766  Sum_probs=147.7

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA  110 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  110 (200)
                      -..+||+|+|++|||||||+++|.++.+.+.+.++.+.......+.+ ++..+.+.+||++|++++...+..++..+|++
T Consensus         5 ~~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~i   83 (177)
T d1x3sa1           5 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISV-DGNKAKLAIWDTAGQERFRTLTPSYYRGAQGV   83 (177)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEE-TTEEEEEEEEEECSSGGGCCSHHHHHTTCCEE
T ss_pred             cceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEE-eccccEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence            45789999999999999999999999988888888877776766666 45558999999999999999999999999999


Q ss_pred             EEEEeCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Q 028986          111 VVVYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFE  189 (200)
Q Consensus       111 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~  189 (200)
                      ++|||++++.+++.+..|+..+.+.. ....|+++++||.|.. .+++..+++.++++.++++++++||++|.|++++|+
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~-~~~v~~~~~~~~~~~~~~~~~e~Sa~tg~gv~e~f~  162 (177)
T d1x3sa1          84 ILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE-NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFE  162 (177)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS-SCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred             EEEEECCCccccccchhhhhhhcccccccceeeEEEeeccccc-cccccHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHH
Confidence            99999999999999999999987654 5568899999999974 456788899999999999999999999999999999


Q ss_pred             HHHHhhccc
Q 028986          190 VLITCTSSY  198 (200)
Q Consensus       190 ~i~~~~~~~  198 (200)
                      +|++++.+.
T Consensus       163 ~l~~~l~~~  171 (177)
T d1x3sa1         163 ELVEKIIQT  171 (177)
T ss_dssp             HHHHHHHTS
T ss_pred             HHHHHHccC
Confidence            999988765

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-33  Score=196.11  Aligned_cols=165  Identities=28%  Similarity=0.372  Sum_probs=137.0

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHcCCCCC-CCccccceeEEEEEEEecCCcEEEEEEEeCCC---hhhhhhcccccccCc
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDP-TSKVTVGASFLSQTIALQDSTTVKFEIWDTAG---QERYAALAPLYYRGA  107 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g---~~~~~~~~~~~~~~~  107 (200)
                      ..+||+++|++|||||||+++|.+..+.. ...++.+.+.....+.+ ++..+.+.+||+++   ++++  .+..+++.+
T Consensus         2 ~~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~d~~~~~g~e~~--~~~~~~~~~   78 (172)
T d2g3ya1           2 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMV-DGESATIILLDMWENKGENEW--LHDHCMQVG   78 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEE-TTEEEEEEEECCTTTTHHHHH--HHHCCCCCC
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeecc-CCceeeeeeeccccccccccc--ccccccccc
Confidence            36899999999999999999999876543 33445555565666665 45568889999765   4444  556788999


Q ss_pred             cEEEEEEeCCCHHhHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHH
Q 028986          108 AVAVVVYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQ  186 (200)
Q Consensus       108 d~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~  186 (200)
                      |++|+|||++++.+++.+..|+..+... ...++|+++|+||+|+...++++.+++++++..+++++++|||++|.|+++
T Consensus        79 ~~~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~g~~i~~  158 (172)
T d2g3ya1          79 DAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKE  158 (172)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHH
T ss_pred             ceeeeeecccccchhhhhhhhhhhhhhccccCCceEEEEeccccccccccccHHHHHHHHHHcCCeEEEEeCCCCcCHHH
Confidence            9999999999999999999999888764 356899999999999988888999999999999999999999999999999


Q ss_pred             HHHHHHHhhcccC
Q 028986          187 LFEVLITCTSSYC  199 (200)
Q Consensus       187 ~~~~i~~~~~~~~  199 (200)
                      +|+.|++.+..++
T Consensus       159 ~f~~l~~~i~~rr  171 (172)
T d2g3ya1         159 LFEGIVRQVRLRR  171 (172)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHcc
Confidence            9999999987654

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-33  Score=197.55  Aligned_cols=164  Identities=26%  Similarity=0.468  Sum_probs=138.5

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEE
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAV  111 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i  111 (200)
                      +.+||+++|++|||||||+++|..+.+...+.++.+... ...... ++..+.+.+||++|++++...+..+++.+|+++
T Consensus         2 ~~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i   79 (191)
T d2ngra_           2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMI-GGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL   79 (191)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEE-TTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             CceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeec-ceeEee-CCceeeeeccccccchhhhhhhhhcccccceee
Confidence            468999999999999999999999999888888777554 333333 555689999999999999999999999999999


Q ss_pred             EEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCC------------CCcCCHHHHHHHHHHcC-CeEEEecC
Q 028986          112 VVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE------------KREVPAQDGIEYAEKNG-MFFIETSA  178 (200)
Q Consensus       112 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~------------~~~~~~~~~~~~~~~~~-~~~~~~S~  178 (200)
                      +|||+++++||+.+..|+.........+.|+++|+||+|+..            ...+..+++.+++..++ ++|++|||
T Consensus        80 lv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA  159 (191)
T d2ngra_          80 VCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA  159 (191)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSCEEECCT
T ss_pred             cccccchHHHHHHHHHHHHHHHhhcCCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcCCCeEEEEeC
Confidence            999999999999997654444334467899999999999853            34578899999999864 68999999


Q ss_pred             CCCCCHHHHHHHHHHhhcc
Q 028986          179 KTADNINQLFEVLITCTSS  197 (200)
Q Consensus       179 ~~~~~i~~~~~~i~~~~~~  197 (200)
                      ++|.||+++|+.+++.+.+
T Consensus       160 k~~~~V~e~f~~l~~~~~~  178 (191)
T d2ngra_         160 LTQKGLKNVFDEAILAALE  178 (191)
T ss_dssp             TTCTTHHHHHHHHHHHHTS
T ss_pred             CCCcCHHHHHHHHHHHHhc
Confidence            9999999999999887653

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-32  Score=191.87  Aligned_cols=164  Identities=34%  Similarity=0.619  Sum_probs=140.3

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA  110 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  110 (200)
                      ..-+||+|+|+++||||||+++|+.+.+.+.+.++.+.......... ++..+.+.+||++|..+....+..++..+|++
T Consensus         4 ~~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~   82 (174)
T d1wmsa_           4 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEV-DGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC   82 (174)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEE-TTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeee-cCceeeEeeecccCcceehhhhhhhhhccceE
Confidence            45679999999999999999999999988888888888876666665 45558999999999999899999999999999


Q ss_pred             EEEEeCCCHHhHHHHHHHHHHHHHc----CCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHc-CCeEEEecCCCCCCHH
Q 028986          111 VVVYDITSPDSFNKAQYWVKELQKH----GSPDIVMALVGNKADLHEKREVPAQDGIEYAEKN-GMFFIETSAKTADNIN  185 (200)
Q Consensus       111 i~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~S~~~~~~i~  185 (200)
                      ++++|.+++.+++.+..|+..+.+.    ...++|+++|+||+|+.+ +++..+++++++++. .+++++|||++|.||+
T Consensus        83 i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~-~~v~~~~~~~~~~~~~~~~~~e~Sak~~~gI~  161 (174)
T d1wmsa_          83 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVA  161 (174)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSS-CSSCHHHHHHHHHHTTCCCEEECCTTTCTTHH
T ss_pred             EEEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhh-ccCcHHHHHHHHHHcCCCeEEEEcCCCCcCHH
Confidence            9999999999999999999877553    245789999999999854 578889999999886 5799999999999999


Q ss_pred             HHHHHHHHhhc
Q 028986          186 QLFEVLITCTS  196 (200)
Q Consensus       186 ~~~~~i~~~~~  196 (200)
                      ++|++|++.+.
T Consensus       162 e~f~~l~~~il  172 (174)
T d1wmsa_         162 AAFEEAVRRVL  172 (174)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999998774

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.7e-33  Score=192.71  Aligned_cols=158  Identities=37%  Similarity=0.706  Sum_probs=139.1

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhh-cccccccCccEEE
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAA-LAPLYYRGAAVAV  111 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-~~~~~~~~~d~~i  111 (200)
                      .+||+++|++|||||||+++|+.+.+.+.+.++.+............ ....+.+||++|...+.. .+..+++++|++|
T Consensus         2 ~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i   80 (165)
T d1z06a1           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDG-ERIKIQLWDTAGQERFRKSMVQHYYRNVHAVV   80 (165)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETT-EEEEEEEEECCCSHHHHTTTHHHHHTTCCEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeec-cceEEEEEeccCchhhccccceeeecCCCceE
Confidence            57999999999999999999999999888888888888777766644 447899999999876654 4677899999999


Q ss_pred             EEEeCCCHHhHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCC---CCCHHHH
Q 028986          112 VVYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKT---ADNINQL  187 (200)
Q Consensus       112 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~---~~~i~~~  187 (200)
                      +|||++++++++.+..|+..+.+.. ..++|+++|+||+|+.+.++++.++++++++.+++++++|||++   +.||+++
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAkt~~~~~~V~e~  160 (165)
T d1z06a1          81 FVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAI  160 (165)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHH
T ss_pred             EEEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchhccchhHHHHHHHHHHCCCEEEEEecccCCcCcCHHHH
Confidence            9999999999999999999887653 56899999999999988888999999999999999999999987   5699999


Q ss_pred             HHHH
Q 028986          188 FEVL  191 (200)
Q Consensus       188 ~~~i  191 (200)
                      |++|
T Consensus       161 F~~l  164 (165)
T d1z06a1         161 FMTL  164 (165)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            9887

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.5e-33  Score=194.62  Aligned_cols=163  Identities=31%  Similarity=0.607  Sum_probs=138.0

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA  110 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  110 (200)
                      ++.+||+|+|++|||||||+++|+.+.+...+.++.+... ...+.. ++..+++.+||++|++.+...+..+++.+|++
T Consensus         3 p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~~~~-~~~~~~-~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~   80 (183)
T d1mh1a_           3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMV-DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVS   80 (183)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEE-TTEEEEEEEECCCCSGGGTTTGGGGCTTCSEE
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHHhCCCCcccccceeece-eeeeec-cCcceEEEeecccccccchhhhhhccccccee
Confidence            5679999999999999999999999998888888776544 344444 56668999999999999999999999999999


Q ss_pred             EEEEeCCCHHhHHHHHH-HHHHHHHcCCCCCeEEEEEeCCCCCCC------------CcCCHHHHHHHHHHcC-CeEEEe
Q 028986          111 VVVYDITSPDSFNKAQY-WVKELQKHGSPDIVMALVGNKADLHEK------------REVPAQDGIEYAEKNG-MFFIET  176 (200)
Q Consensus       111 i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~  176 (200)
                      ++|||++++++++.+.. |+..+... ..++|+++|+||+|+...            ......+...+++.++ ++|++|
T Consensus        81 ilv~d~~~~~sf~~i~~~~~~~~~~~-~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~E~  159 (183)
T d1mh1a_          81 LICFSLVSPASFENVRAKWYPEVRHH-CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC  159 (183)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHH-STTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred             eeeeccchHHHHHHHHHHHHHHHHHh-CCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCceEEEc
Confidence            99999999999999865 55555544 668999999999997543            3456678888888876 789999


Q ss_pred             cCCCCCCHHHHHHHHHHhhc
Q 028986          177 SAKTADNINQLFEVLITCTS  196 (200)
Q Consensus       177 S~~~~~~i~~~~~~i~~~~~  196 (200)
                      ||++|.||+++|+.|++.+.
T Consensus       160 SAk~~~~V~e~F~~l~~~il  179 (183)
T d1mh1a_         160 SALTQRGLKTVFDEAIRAVL  179 (183)
T ss_dssp             CTTTCTTHHHHHHHHHHHHS
T ss_pred             CCCCCcCHHHHHHHHHHHHc
Confidence            99999999999999998764

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=7.9e-33  Score=194.34  Aligned_cols=163  Identities=35%  Similarity=0.670  Sum_probs=141.0

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEE
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVV  112 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~  112 (200)
                      -+||+|+|.+|||||||+++|+++.+...+.++.+.+......... +..+.+.+||++|...+...+..++..+|++++
T Consensus         2 ~~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~-~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   80 (184)
T d1vg8a_           2 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVD-DRLVTMQIWDTAGQERFQSLGVAFYRGADCCVL   80 (184)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESS-SCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeC-CceEEEEeeecCCcccccccccccccCccEEEE
Confidence            3799999999999999999999999988888888888877777664 444899999999999999999999999999999


Q ss_pred             EEeCCCHHhHHHHHHHHHHHHHcC----CCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHH-cCCeEEEecCCCCCCHHHH
Q 028986          113 VYDITSPDSFNKAQYWVKELQKHG----SPDIVMALVGNKADLHEKREVPAQDGIEYAEK-NGMFFIETSAKTADNINQL  187 (200)
Q Consensus       113 v~d~~~~~s~~~~~~~~~~i~~~~----~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~S~~~~~~i~~~  187 (200)
                      ++|.+++.+++.+..|+..+....    ..++|+++|+||+|+.+ +....++..+++.. .++++++|||++|.||+++
T Consensus        81 ~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~  159 (184)
T d1vg8a_          81 VFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQA  159 (184)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSC-CCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHH
T ss_pred             eecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccc-cchhHHHHHHHHHHhcCCeEEEEcCCCCcCHHHH
Confidence            999999999999999998876542    34689999999999865 45666677777654 5789999999999999999


Q ss_pred             HHHHHHhhcc
Q 028986          188 FEVLITCTSS  197 (200)
Q Consensus       188 ~~~i~~~~~~  197 (200)
                      |++|++.+.+
T Consensus       160 f~~l~~~i~~  169 (184)
T d1vg8a_         160 FQTIARNALK  169 (184)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999887654

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.1e-32  Score=192.79  Aligned_cols=163  Identities=26%  Similarity=0.495  Sum_probs=137.6

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEE
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVV  112 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~  112 (200)
                      ++||+++|++|||||||+++|+.+.+...+.++..... ...... ++..+.+.+||++|++.+...+..+++.+|++++
T Consensus         2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~-~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~il   79 (179)
T d1m7ba_           2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEI-DTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI   79 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC-SSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeecc-cccccc-cceEEeeccccccccccccccccchhhhhhhhhe
Confidence            57999999999999999999999999887777766544 344444 5666999999999999999999999999999999


Q ss_pred             EEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCC------------CCcCCHHHHHHHHHHcCC-eEEEecCC
Q 028986          113 VYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE------------KREVPAQDGIEYAEKNGM-FFIETSAK  179 (200)
Q Consensus       113 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~S~~  179 (200)
                      |||+++++||+.+..|+.........++|+++|+||+|+..            .+.++.++...++++++. +|++|||+
T Consensus        80 v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~y~E~SAk  159 (179)
T d1m7ba_          80 CFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSAL  159 (179)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTT
T ss_pred             eeecccCCCHHHHHHHHHHHHhccCCcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHhCCCeEEEEeCC
Confidence            99999999999886655444333356899999999999853            356788999999998874 89999999


Q ss_pred             CCCC-HHHHHHHHHHhhcc
Q 028986          180 TADN-INQLFEVLITCTSS  197 (200)
Q Consensus       180 ~~~~-i~~~~~~i~~~~~~  197 (200)
                      +|.+ ++++|+.+++.+.+
T Consensus       160 ~~~n~i~~~F~~~~~~~l~  178 (179)
T d1m7ba_         160 QSENSVRDIFHVATLACVN  178 (179)
T ss_dssp             TBHHHHHHHHHHHHHHHHT
T ss_pred             CCCcCHHHHHHHHHHHHhc
Confidence            9984 99999999988764

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.98  E-value=2.9e-32  Score=188.08  Aligned_cols=157  Identities=25%  Similarity=0.381  Sum_probs=127.4

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEE
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAV  111 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i  111 (200)
                      .++||+++|+++||||||+++|..+.+...+.+|.+..+..  +...+   +.+.+||+||++.+...+..++..+|+++
T Consensus         1 ~e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~~--~~~~~---~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   75 (164)
T d1zd9a1           1 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--ITKGN---VTIKLWDIGGQPRFRSMWERYCRGVSAIV   75 (164)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--EEETT---EEEEEEEECCSHHHHTTHHHHHTTCSEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeeee--eeeee---EEEEEeeccccccccccccccccccchhh
Confidence            36899999999999999999999999887777777665543  33322   78999999999999999999999999999


Q ss_pred             EEEeCCCHHhHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCcCCHHHHHHH-----HHHcCCeEEEecCCCCCCHH
Q 028986          112 VVYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEY-----AEKNGMFFIETSAKTADNIN  185 (200)
Q Consensus       112 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~S~~~~~~i~  185 (200)
                      +|||++++.+++....|+..+... ...++|+++|+||.|+.....  ..+..+.     +...+++++++||++|.|++
T Consensus        76 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~e~Sa~~g~gv~  153 (164)
T d1zd9a1          76 YMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALD--EKELIEKMNLSAIQDREICCYSISCKEKDNID  153 (164)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             cccccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhhh--HHHHHHHHHHHHHHhCCCEEEEEeCcCCcCHH
Confidence            999999999999888877766543 356899999999999865432  2222222     22335679999999999999


Q ss_pred             HHHHHHHHhh
Q 028986          186 QLFEVLITCT  195 (200)
Q Consensus       186 ~~~~~i~~~~  195 (200)
                      ++|+||++.+
T Consensus       154 e~~~~l~~~~  163 (164)
T d1zd9a1         154 ITLQWLIQHS  163 (164)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHHHcc
Confidence            9999999865

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.6e-30  Score=179.77  Aligned_cols=159  Identities=21%  Similarity=0.336  Sum_probs=129.2

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEE
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAV  111 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i  111 (200)
                      +.+||+++|+++||||||++++.++.+... .++....+ ...+.+ ++..+.+.+||++|+..+     .+++.+|++|
T Consensus         4 p~~ki~vlG~~~vGKTsLi~~~~~~~f~~~-~~t~~~~~-~~~i~v-~~~~~~l~i~Dt~g~~~~-----~~~~~ad~~i   75 (175)
T d2bmja1           4 PELRLGVLGDARSGKSSLIHRFLTGSYQVL-EKTESEQY-KKEMLV-DGQTHLVLIREEAGAPDA-----KFSGWADAVI   75 (175)
T ss_dssp             CEEEEEEECCTTTTHHHHHHHHHHSCCCCC-CCSSCEEE-EEEEEE-TTEEEEEEEEECSSCCCH-----HHHHHCSEEE
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHhCCCCCc-CCccceeE-EEEeec-CceEEEEEEeeccccccc-----ccccccceeE
Confidence            479999999999999999999999987654 34444444 444544 566799999999998653     3678899999


Q ss_pred             EEEeCCCHHhHHHHHHHHHHHHHc---CCCCCeEEEEEeCCCCCC--CCcCCHHHHHHHHHH-cCCeEEEecCCCCCCHH
Q 028986          112 VVYDITSPDSFNKAQYWVKELQKH---GSPDIVMALVGNKADLHE--KREVPAQDGIEYAEK-NGMFFIETSAKTADNIN  185 (200)
Q Consensus       112 ~v~d~~~~~s~~~~~~~~~~i~~~---~~~~~p~iiv~nK~D~~~--~~~~~~~~~~~~~~~-~~~~~~~~S~~~~~~i~  185 (200)
                      +|||++++.||+.+..|+..+...   ....+|+++|+||.|+..  .+.++.+++.+++.. ++++|++|||+++.|++
T Consensus        76 lVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~  155 (175)
T d2bmja1          76 FVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCADMKRCSYYETCATYGLNVD  155 (175)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHHTSTTEEEEEEBTTTTBTHH
T ss_pred             EEeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHHHHHHhCCCeEEEeCCCCCcCHH
Confidence            999999999999999998887654   245689999999888743  466778888888755 57899999999999999


Q ss_pred             HHHHHHHHhhccc
Q 028986          186 QLFEVLITCTSSY  198 (200)
Q Consensus       186 ~~~~~i~~~~~~~  198 (200)
                      ++|..|++.+.+.
T Consensus       156 ~~F~~l~~~i~~~  168 (175)
T d2bmja1         156 RVFQEVAQKVVTL  168 (175)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999887653

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.97  E-value=1.5e-30  Score=179.52  Aligned_cols=159  Identities=22%  Similarity=0.281  Sum_probs=122.9

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEE
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAV  111 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i  111 (200)
                      +.+||+|+|++|||||||+++|.+..+. ...++.+...  ..+...   .+.+.+||++|++.+...+..++..+++++
T Consensus         1 k~~ki~ivG~~~~GKTsLi~~l~~~~~~-~~~~t~~~~~--~~~~~~---~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   74 (165)
T d1ksha_           1 RELRLLMLGLDNAGKTTILKKFNGEDVD-TISPTLGFNI--KTLEHR---GFKLNIWDVGGQKSLRSYWRNYFESTDGLI   74 (165)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTCCCS-SCCCCSSEEE--EEEEET---TEEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred             CcEEEEEECCCCCCHHHHHHHHcCCCCC-cccceEeeee--eecccc---ccceeeeecCcchhhhhHHHhhhhhhhcce
Confidence            3689999999999999999999987654 3444554333  233332   278999999999999999999999999999


Q ss_pred             EEEeCCCHHhHHHHHHHHHH-HHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHH-----HcCCeEEEecCCCCCCHH
Q 028986          112 VVYDITSPDSFNKAQYWVKE-LQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAE-----KNGMFFIETSAKTADNIN  185 (200)
Q Consensus       112 ~v~d~~~~~s~~~~~~~~~~-i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~i~  185 (200)
                      +++|+++..++.....++.. +......++|+++|+||+|+.....  .++......     ..++++++|||++|.|+.
T Consensus        75 ~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~  152 (165)
T d1ksha_          75 WVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALS--CNAIQEALELDSIRSHHWRIQGCSAVTGEDLL  152 (165)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             eeeecccchhHHHHHHhhhhhhhhcccCCCceEEEEeccccccccC--HHHHHHHHHhhhhhcCCCEEEEEECCCCCCHH
Confidence            99999999888877655554 4444466899999999999865443  333333221     224579999999999999


Q ss_pred             HHHHHHHHhhccc
Q 028986          186 QLFEVLITCTSSY  198 (200)
Q Consensus       186 ~~~~~i~~~~~~~  198 (200)
                      ++|+||++++.++
T Consensus       153 e~~~~l~~~i~~r  165 (165)
T d1ksha_         153 PGIDWLLDDISSR  165 (165)
T ss_dssp             HHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHcC
Confidence            9999999998764

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.97  E-value=8.6e-31  Score=182.52  Aligned_cols=159  Identities=19%  Similarity=0.267  Sum_probs=123.2

Q ss_pred             CCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCcc
Q 028986           29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAA  108 (200)
Q Consensus        29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d  108 (200)
                      ..++++||+++|++|||||||+++|.++.+... .++.+.  ....+...+   +.+.+||++|++.+...+..++..+|
T Consensus        12 ~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~-~~~~~~--~~~~i~~~~---~~~~i~d~~g~~~~~~~~~~~~~~~~   85 (176)
T d1fzqa_          12 APDQEVRILLLGLDNAGKTTLLKQLASEDISHI-TPTQGF--NIKSVQSQG---FKLNVWDIGGQRKIRPYWRSYFENTD   85 (176)
T ss_dssp             CCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEE-EEETTE--EEEEEEETT---EEEEEEECSSCGGGHHHHHHHHTTCS
T ss_pred             CCCCEEEEEEECCCCCCHHHHHHHHhcCCCCcc-eeeeee--eEEEeccCC---eeEeEeeccccccchhHHHHHhhccc
Confidence            345679999999999999999999999876432 223332  233333332   78999999999999999999999999


Q ss_pred             EEEEEEeCCCHHhHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCcCCHHHHHHHH-----HHcCCeEEEecCCCCC
Q 028986          109 VAVVVYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYA-----EKNGMFFIETSAKTAD  182 (200)
Q Consensus       109 ~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~  182 (200)
                      ++++|||++++.++..+..|+..+... ...++|+++|+||+|+.....  .....+..     ....+.+++|||++|.
T Consensus        86 ~ii~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~SA~tg~  163 (176)
T d1fzqa_          86 ILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP--ASEIAEGLNLHTIRDRVWQIQSCSALTGE  163 (176)
T ss_dssp             EEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCT
T ss_pred             eeEEeeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEecccccccc--HHHHHHHHHHHHHHhcCCEEEEEeCCCCC
Confidence            999999999999999988777766543 356789999999999976433  22222221     2235679999999999


Q ss_pred             CHHHHHHHHHHhh
Q 028986          183 NINQLFEVLITCT  195 (200)
Q Consensus       183 ~i~~~~~~i~~~~  195 (200)
                      |++++|+||++++
T Consensus       164 gv~e~~~~l~~~i  176 (176)
T d1fzqa_         164 GVQDGMNWVCKNV  176 (176)
T ss_dssp             THHHHHHHHHHTC
T ss_pred             CHHHHHHHHHhcC
Confidence            9999999999864

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.97  E-value=1.1e-30  Score=181.47  Aligned_cols=158  Identities=23%  Similarity=0.390  Sum_probs=121.8

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA  110 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  110 (200)
                      ++.+||+++|+++||||||+++|.++.+.. ..++.+...  .....   ..+.+.+||+||.+.+...+..+++.+|++
T Consensus        10 ~k~~kIvlvG~~~vGKTSli~rl~~~~~~~-~~~t~~~~~--~~~~~---~~~~~~i~D~~g~~~~~~~~~~~~~~~~~i   83 (173)
T d1e0sa_          10 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNV--ETVTY---KNVKFNVWDVGGQDKIRPLWRHYYTGTQGL   83 (173)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHTTCCCCEE-EEEETTEEE--EEEEE---TTEEEEEEEESCCGGGHHHHGGGTTTCCEE
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCC-ccceeeeeE--EEeec---cceeeEEecCCCcchhhhHHHhhhcccceE
Confidence            557999999999999999999999876533 223333332  22222   227899999999999999999999999999


Q ss_pred             EEEEeCCCHHhHHHHHHHHHHHHH-cCCCCCeEEEEEeCCCCCCCCcCCHHHHHHH-----HHHcCCeEEEecCCCCCCH
Q 028986          111 VVVYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHEKREVPAQDGIEY-----AEKNGMFFIETSAKTADNI  184 (200)
Q Consensus       111 i~v~d~~~~~s~~~~~~~~~~i~~-~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~S~~~~~~i  184 (200)
                      ++|+|+++.+++..+..|+..+.+ ......|+++|+||+|+.....  ..++...     +...++.+++|||++|+|+
T Consensus        84 i~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~e~SA~tg~gv  161 (173)
T d1e0sa_          84 IFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK--PHEIQEKLGLTRIRDRNWYVQPSCATSGDGL  161 (173)
T ss_dssp             EEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECBTTTTBTH
T ss_pred             EEEEecccchhHHHHHHHHHHHhhhcccccceeeeeeeccccccccc--HHHHHHHHHHHHHHhCCCEEEEeeCCCCcCH
Confidence            999999999999988777766544 3356799999999999865422  2222222     2233667999999999999


Q ss_pred             HHHHHHHHHhhc
Q 028986          185 NQLFEVLITCTS  196 (200)
Q Consensus       185 ~~~~~~i~~~~~  196 (200)
                      +++|+||.+.++
T Consensus       162 ~e~~~~l~~~~k  173 (173)
T d1e0sa_         162 YEGLTWLTSNYK  173 (173)
T ss_dssp             HHHHHHHHHHCC
T ss_pred             HHHHHHHHHhcC
Confidence            999999998763

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.97  E-value=2.1e-31  Score=186.66  Aligned_cols=161  Identities=22%  Similarity=0.343  Sum_probs=121.2

Q ss_pred             CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccE
Q 028986           30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAV  109 (200)
Q Consensus        30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~  109 (200)
                      .++.+||+++|++|||||||+++|.+..+.. ..++.+.....  ....   .+++.+||++|++.+...+..++..+|+
T Consensus        14 ~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~-~~~t~~~~~~~--~~~~---~~~~~i~D~~g~~~~~~~~~~~~~~~~~   87 (182)
T d1moza_          14 SNKELRILILGLDGAGKTTILYRLQIGEVVT-TKPTIGFNVET--LSYK---NLKLNVWDLGGQTSIRPYWRCYYADTAA   87 (182)
T ss_dssp             CSSCEEEEEEEETTSSHHHHHHHTCCSEEEE-ECSSTTCCEEE--EEET---TEEEEEEEEC----CCTTGGGTTTTEEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHhcCCCCc-cccccceEEEE--EeeC---CEEEEEEecccccccchhHHhhhcccee
Confidence            4568999999999999999999998876533 23344433322  2222   2789999999999999999999999999


Q ss_pred             EEEEEeCCCHHhHHHHHHHHHHHHH-cCCCCCeEEEEEeCCCCCCCCcCCHHHHHHH-----HHHcCCeEEEecCCCCCC
Q 028986          110 AVVVYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHEKREVPAQDGIEY-----AEKNGMFFIETSAKTADN  183 (200)
Q Consensus       110 ~i~v~d~~~~~s~~~~~~~~~~i~~-~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~S~~~~~~  183 (200)
                      +++|+|++++.++.....|+..+.. ....+.|+++|+||+|+.....  ..++.+.     +...++.+++|||++|.|
T Consensus        88 ii~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~e~SA~~g~g  165 (182)
T d1moza_          88 VIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALS--ASEVSKELNLVELKDRSWSIVASSAIKGEG  165 (182)
T ss_dssp             EEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCC--HHHHHHHTTTTTCCSSCEEEEEEBGGGTBT
T ss_pred             EEEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeeccccccC--HHHHHHHHHHHHHhhCCCEEEEEECCCCCC
Confidence            9999999999999888777766543 4456799999999999865322  3333322     223456799999999999


Q ss_pred             HHHHHHHHHHhhccc
Q 028986          184 INQLFEVLITCTSSY  198 (200)
Q Consensus       184 i~~~~~~i~~~~~~~  198 (200)
                      ++++|++|++.+.+.
T Consensus       166 v~e~~~~l~~~i~~~  180 (182)
T d1moza_         166 ITEGLDWLIDVIKEE  180 (182)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHc
Confidence            999999999998764

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.96  E-value=5e-29  Score=170.60  Aligned_cols=154  Identities=19%  Similarity=0.303  Sum_probs=119.9

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV  113 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v  113 (200)
                      +||+|+|++|||||||+++|.++++............   ..   +...+.+.+||++|...+...+..++..+++++++
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~   74 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE---TV---EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV   74 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCEE---EE---ECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccccceeeEEE---EE---eeeeEEEEEecCCCcccchhhhhhhhccceeEEEE
Confidence            5899999999999999999999877554443322221   11   22337899999999999999999999999999999


Q ss_pred             EeCCCHHhHHHHHHHHHHHHH-cCCCCCeEEEEEeCCCCCCCCcCCHHHHH-----HHHHHcCCeEEEecCCCCCCHHHH
Q 028986          114 YDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHEKREVPAQDGI-----EYAEKNGMFFIETSAKTADNINQL  187 (200)
Q Consensus       114 ~d~~~~~s~~~~~~~~~~i~~-~~~~~~p~iiv~nK~D~~~~~~~~~~~~~-----~~~~~~~~~~~~~S~~~~~~i~~~  187 (200)
                      +|..++.++..+..|+..+.. ......|+++++||.|+.....  ..+..     .++...++++++|||++|.|++++
T Consensus        75 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~SAktg~gi~e~  152 (160)
T d1r8sa_          75 VDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRHRNWYIQATCATSGDGLYEG  152 (160)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHH
T ss_pred             EEecChHHHHHHHHHHHHHHHhhcccCceEEEEeeccccccccc--HHHHHHHHHHHHHhhCCCEEEEeECCCCCCHHHH
Confidence            999999999888777776654 3356789999999999865432  22222     233345778999999999999999


Q ss_pred             HHHHHHhh
Q 028986          188 FEVLITCT  195 (200)
Q Consensus       188 ~~~i~~~~  195 (200)
                      |++|.+++
T Consensus       153 ~~~l~~~l  160 (160)
T d1r8sa_         153 LDWLSNQL  160 (160)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHhcC
Confidence            99999874

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.94  E-value=2e-26  Score=160.21  Aligned_cols=158  Identities=20%  Similarity=0.335  Sum_probs=116.2

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA  110 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  110 (200)
                      ++++||+|+|.+|||||||+++|.+..+..... +.+..  .......+   .++.+||+++.+.....+..++..++++
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~~-~~~~~--~~~~~~~~---~~~~~~d~~~~~~~~~~~~~~~~~~~~~   86 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSP-TIGSN--VEEIVINN---TRFLMWDIGGQESLRSSWNTYYTNTEFV   86 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEEC-CSCSS--CEEEEETT---EEEEEEECCC----CGGGHHHHTTCCEE
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCcccc-cccee--EEEEeecc---eEEEEeccccccccccchhhhhccceee
Confidence            566899999999999999999999987643222 22211  22222222   6899999999999999999999999999


Q ss_pred             EEEEeCCCHHhHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCcCCHHHHHHHH-----HHcCCeEEEecCCCCCCH
Q 028986          111 VVVYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYA-----EKNGMFFIETSAKTADNI  184 (200)
Q Consensus       111 i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~i  184 (200)
                      ++++|.++..++.....++...... .....|+++|+||+|+.....  ..+..+..     ...+++++++||++|+|+
T Consensus        87 i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~~Sa~tg~Gi  164 (177)
T d1zj6a1          87 IVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMT--VAEISQFLKLTSIKDHQWHIQACCALTGEGL  164 (177)
T ss_dssp             EEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTGGGCCSSCEEEEECBTTTTBTH
T ss_pred             eeecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccCc--HHHHHHHHHHHhhHhcCCEEEEEeCCCCCCH
Confidence            9999999998888776655554433 356899999999999865433  23333332     223567999999999999


Q ss_pred             HHHHHHHHHhhc
Q 028986          185 NQLFEVLITCTS  196 (200)
Q Consensus       185 ~~~~~~i~~~~~  196 (200)
                      +++++||.++++
T Consensus       165 ~e~~~~L~~~lk  176 (177)
T d1zj6a1         165 CQGLEWMMSRLK  176 (177)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhC
Confidence            999999999874

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.93  E-value=2.5e-25  Score=153.09  Aligned_cols=160  Identities=20%  Similarity=0.346  Sum_probs=121.1

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEE
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAV  111 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i  111 (200)
                      +++||+++|.+|||||||+++|+++.+.... ++.+...  ......   .+.+.+||.++.+.....+...+...++++
T Consensus         4 ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~~-~~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (169)
T d1upta_           4 REMRILILGLDGAGKTTILYRLQVGEVVTTI-PTIGFNV--ETVTYK---NLKFQVWDLGGLTSIRPYWRCYYSNTDAVI   77 (169)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSSCCCCC-CCSSEEE--EEEEET---TEEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCCccee-cccceee--eeeccC---ceEEEEeeccccccccccchhhhhhhhhhh
Confidence            4689999999999999999999998875432 2333222  222222   268999999999998999999999999999


Q ss_pred             EEEeCCCHHhHHHHHHHHHH-HHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHH----HHHHHcCCeEEEecCCCCCCHHH
Q 028986          112 VVYDITSPDSFNKAQYWVKE-LQKHGSPDIVMALVGNKADLHEKREVPAQDGI----EYAEKNGMFFIETSAKTADNINQ  186 (200)
Q Consensus       112 ~v~d~~~~~s~~~~~~~~~~-i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~----~~~~~~~~~~~~~S~~~~~~i~~  186 (200)
                      +++|..+..++.....++.. +........|+++++||.|+...... .+...    .++...++++++|||++|.|+++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~~-~~i~~~~~~~~~~~~~~~~~~~SA~~g~gv~e  156 (169)
T d1upta_          78 YVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTS-SEMANSLGLPALKDRKWQIFKTSATKGTGLDE  156 (169)
T ss_dssp             EEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH-HHHHHHHTGGGCTTSCEEEEECCTTTCTTHHH
T ss_pred             hhhhhhhcchhhhccchhhhhhhhhccccceEEEEEeeccccccccH-HHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHH
Confidence            99999988777766554444 44444667899999999998654331 12222    23334567899999999999999


Q ss_pred             HHHHHHHhhccc
Q 028986          187 LFEVLITCTSSY  198 (200)
Q Consensus       187 ~~~~i~~~~~~~  198 (200)
                      +|++|++.++++
T Consensus       157 ~~~~l~~~l~~k  168 (169)
T d1upta_         157 AMEWLVETLKSR  168 (169)
T ss_dssp             HHHHHHHHHHTC
T ss_pred             HHHHHHHHHHhC
Confidence            999999998775

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.93  E-value=2.8e-25  Score=154.66  Aligned_cols=159  Identities=18%  Similarity=0.134  Sum_probs=107.8

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCc-cccceeEEEEEEEecCCcEEEEEEEeCCChh--------hhhhccc
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSK-VTVGASFLSQTIALQDSTTVKFEIWDTAGQE--------RYAALAP  101 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~--------~~~~~~~  101 (200)
                      .+.-.|+|+|.+|||||||+|+|++........ +..............+   ..+.+|||||..        .+.....
T Consensus         3 ~~~~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~---~~~~~~DtpG~~~~~~~~~~~~~~~~~   79 (178)
T d1wf3a1           3 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR---RQIVFVDTPGLHKPMDALGEFMDQEVY   79 (178)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT---EEEEEEECCCCCCCCSHHHHHHHHHHH
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeeee---eeeeecccccccccccccchhcccccc
Confidence            344579999999999999999999876432221 1122222222222222   579999999952        2233334


Q ss_pred             ccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcC-CeEEEecCCC
Q 028986          102 LYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNG-MFFIETSAKT  180 (200)
Q Consensus       102 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~S~~~  180 (200)
                      .++.++|++++|+|++++.+... ..|.+.++.. ..+.|+++|+||+|+....   .+....+....+ ..++++||++
T Consensus        80 ~~~~~ad~il~v~D~~~~~~~~~-~~i~~~l~~~-~~~~piilv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~iSA~~  154 (178)
T d1wf3a1          80 EALADVNAVVWVVDLRHPPTPED-ELVARALKPL-VGKVPILLVGNKLDAAKYP---EEAMKAYHELLPEAEPRMLSALD  154 (178)
T ss_dssp             HHTSSCSEEEEEEETTSCCCHHH-HHHHHHHGGG-TTTSCEEEEEECGGGCSSH---HHHHHHHHHTSTTSEEEECCTTC
T ss_pred             cccccccceeeeechhhhhcccc-cchhhheecc-ccchhhhhhhcccccccCH---HHHHHHHHhhcccCceEEEecCC
Confidence            55788999999999998643322 4455555544 4578999999999986532   223333334443 4789999999


Q ss_pred             CCCHHHHHHHHHHhhcc
Q 028986          181 ADNINQLFEVLITCTSS  197 (200)
Q Consensus       181 ~~~i~~~~~~i~~~~~~  197 (200)
                      +.|+++++++|++.+.+
T Consensus       155 ~~gi~~L~~~i~~~lpe  171 (178)
T d1wf3a1         155 ERQVAELKADLLALMPE  171 (178)
T ss_dssp             HHHHHHHHHHHHTTCCB
T ss_pred             CCCHHHHHHHHHHhCCC
Confidence            99999999999998865

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=2e-25  Score=152.82  Aligned_cols=151  Identities=23%  Similarity=0.285  Sum_probs=107.0

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcCCCCCCCc-cccceeEEEEEEEecCCcEEEEEEEeCCChhh--------hhhcccccc
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSK-VTVGASFLSQTIALQDSTTVKFEIWDTAGQER--------YAALAPLYY  104 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--------~~~~~~~~~  104 (200)
                      +||+++|++|||||||+|+|++........ +..........+...+   ..+.++|++|..+        .......++
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~   78 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG---MPLHIIDTAGLREASDEVERIGIERAWQEI   78 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT---EEEEEEECCCCSCCSSHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccC---ceeeeccccccccccccchhHHHHHHHHHH
Confidence            689999999999999999999876532222 2222222222333322   5788999999321        123334557


Q ss_pred             cCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCH
Q 028986          105 RGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNI  184 (200)
Q Consensus       105 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i  184 (200)
                      ..+|++++++|..+..+.+....|...+... ....|+++|+||+|+........       +..+.+++++||+++.|+
T Consensus        79 ~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~iilv~NK~Dl~~~~~~~~-------~~~~~~~~~iSAk~~~gi  150 (161)
T d2gj8a1          79 EQADRVLFMVDGTTTDAVDPAEIWPEFIARL-PAKLPITVVRNKADITGETLGMS-------EVNGHALIRLSARTGEGV  150 (161)
T ss_dssp             HTCSEEEEEEETTTCCCCSHHHHCHHHHHHS-CTTCCEEEEEECHHHHCCCCEEE-------EETTEEEEECCTTTCTTH
T ss_pred             Hhccccceeeccccccchhhhhhhhhhhhhc-ccccceeeccchhhhhhhHHHHH-------HhCCCcEEEEECCCCCCH
Confidence            8899999999999887776666665555554 45789999999999855432111       123568999999999999


Q ss_pred             HHHHHHHHHhh
Q 028986          185 NQLFEVLITCT  195 (200)
Q Consensus       185 ~~~~~~i~~~~  195 (200)
                      ++++++|.+.+
T Consensus       151 ~~L~~~l~~~l  161 (161)
T d2gj8a1         151 DVLRNHLKQSM  161 (161)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHhhC
Confidence            99999999864

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.92  E-value=1e-24  Score=151.98  Aligned_cols=158  Identities=17%  Similarity=0.114  Sum_probs=105.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhh----h---hcccccccCc
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERY----A---ALAPLYYRGA  107 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~----~---~~~~~~~~~~  107 (200)
                      +|+|+|.+|||||||+|+|++........................+  .++.+|||||....    .   ......+..+
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~   80 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEE--ERFTLADIPGIIEGASEGKGLGLEFLRHIART   80 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSS--CEEEEEECCCCCCCGGGSCCSCHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeeceeeecCC--CeEEEcCCCeeecCchHHHHHHHHHHHHHHhh
Confidence            5999999999999999999986543332222233332222233233  46899999994221    1   1112345778


Q ss_pred             cEEEEEEeCCCH--HhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHH
Q 028986          108 AVAVVVYDITSP--DSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNIN  185 (200)
Q Consensus       108 d~~i~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~  185 (200)
                      +++++++|....  ........|+...... ..+.|+++|+||+|+.....  .++..+.....+.+++++||++|.|++
T Consensus        81 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p~iiv~NK~D~~~~~~--~~~~~~~~~~~~~~~~~iSA~tg~gid  157 (180)
T d1udxa2          81 RVLLYVLDAADEPLKTLETLRKEVGAYDPA-LLRRPSLVALNKVDLLEEEA--VKALADALAREGLAVLPVSALTGAGLP  157 (180)
T ss_dssp             SEEEEEEETTSCHHHHHHHHHHHHHHHCHH-HHHSCEEEEEECCTTSCHHH--HHHHHHHHHTTTSCEEECCTTTCTTHH
T ss_pred             hhhhhhcccccccccchhhhhhhhhccccc-cchhhhhhhhhhhhhhhHHH--HHHHHHHHHhcCCeEEEEEcCCCCCHH
Confidence            999999998754  2333334444333221 23578999999999866433  334445555678899999999999999


Q ss_pred             HHHHHHHHhhcc
Q 028986          186 QLFEVLITCTSS  197 (200)
Q Consensus       186 ~~~~~i~~~~~~  197 (200)
                      ++++.|.+.+.+
T Consensus       158 ~L~~~i~~~l~~  169 (180)
T d1udxa2         158 ALKEALHALVRS  169 (180)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhh
Confidence            999999888865

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=1.8e-23  Score=143.06  Aligned_cols=151  Identities=19%  Similarity=0.259  Sum_probs=115.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEEE
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVY  114 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~  114 (200)
                      ||+++|++|||||||+++|.++.+.. ..++.+...  ......+   ....+||+++.......+..++..++++++++
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~~-~~~t~~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPTS--EELAIGN---IKFTTFDLGGHIQARRLWKDYFPEVNGIVFLV   75 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCC-CCCCCSCEE--EEECCTT---CCEEEEECCCSGGGGGGGGGGCTTCSEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCe-eeceeeEeE--EEeccCC---eeEEEEeeccchhhhhhHhhhhhheeeeeeec
Confidence            79999999999999999999987653 344444333  2223322   56889999999989999999999999999999


Q ss_pred             eCCCHHhHHHHHHHHHHHHH-cCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHH------------HcCCeEEEecCCCC
Q 028986          115 DITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHEKREVPAQDGIEYAE------------KNGMFFIETSAKTA  181 (200)
Q Consensus       115 d~~~~~s~~~~~~~~~~i~~-~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~------------~~~~~~~~~S~~~~  181 (200)
                      |.++..++.....|+..... ....+.|+++++||.|+....  ...+..+...            ...+.+++|||++|
T Consensus        76 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg  153 (166)
T d2qtvb1          76 DAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAV--SEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMR  153 (166)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSCC--CHHHHHHHHTCSSCCC---CCSSCCEEEEEEBTTTT
T ss_pred             cccchhhhhhhhHHHHhhhhhhccCCceEEEEeccccccccC--CHHHHHHHhhhhhhhHHHhhcccCCCEEEEeeCCCC
Confidence            99999888777666666554 336678999999999985532  2333332221            22456999999999


Q ss_pred             CCHHHHHHHHHH
Q 028986          182 DNINQLFEVLIT  193 (200)
Q Consensus       182 ~~i~~~~~~i~~  193 (200)
                      +|++++|+||.+
T Consensus       154 ~Gv~e~~~~l~~  165 (166)
T d2qtvb1         154 NGYLEAFQWLSQ  165 (166)
T ss_dssp             BSHHHHHHHHTT
T ss_pred             CCHHHHHHHHhC
Confidence            999999999865

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=2.1e-25  Score=157.67  Aligned_cols=160  Identities=20%  Similarity=0.174  Sum_probs=123.0

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEE
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAV  111 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i  111 (200)
                      +++||+++|..|||||||+++|....+.  +.+|.+.....  +..   ..+.+++||++|++.+...|..++..+++++
T Consensus         1 ke~Kiv~lG~~~vGKTsll~r~~~~~~~--~~pTiG~~~~~--~~~---~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   73 (200)
T d2bcjq2           1 RELKLLLLGTGESGKSTFIKQMRIIHGS--GVPTTGIIEYP--FDL---QSVIFRMVDVGGQRSERRKWIHCFENVTSIM   73 (200)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHTSS--CCCCCSCEEEE--EEC---SSCEEEEEECCCSTTGGGGGGGGCSSCSEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhCCCCC--CCceeeEEEEE--Eec---cceeeeeccccccccccccccccccccceee
Confidence            4789999999999999999999988764  45777765432  222   2268999999999999999999999999999


Q ss_pred             EEEeCCCHH-----------hHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCC----------------CcCCHHHHHH
Q 028986          112 VVYDITSPD-----------SFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK----------------REVPAQDGIE  164 (200)
Q Consensus       112 ~v~d~~~~~-----------s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~----------------~~~~~~~~~~  164 (200)
                      +++|.++..           .++....|...+......+.|+++++||.|+...                ..........
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (200)
T d2bcjq2          74 FLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAARE  153 (200)
T ss_dssp             EEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHH
T ss_pred             EeeeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHH
Confidence            999988753           3566777888887777789999999999997321                1122222233


Q ss_pred             HHHH----------cCCeEEEecCCCCCCHHHHHHHHHHhhccc
Q 028986          165 YAEK----------NGMFFIETSAKTADNINQLFEVLITCTSSY  198 (200)
Q Consensus       165 ~~~~----------~~~~~~~~S~~~~~~i~~~~~~i~~~~~~~  198 (200)
                      +...          ..+.++++||++|.||+++|+.|.+.+.+.
T Consensus       154 ~i~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~~  197 (200)
T d2bcjq2         154 FILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL  197 (200)
T ss_dssp             HHHHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHHHH
Confidence            2221          234578999999999999999998887653

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.91  E-value=2.7e-24  Score=151.35  Aligned_cols=157  Identities=18%  Similarity=0.244  Sum_probs=114.9

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEE
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAV  111 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i  111 (200)
                      +++||+++|..|||||||+++|....++..+     ..  ...+...   .+++++||++|++.+...+..+++.+++++
T Consensus         1 ~e~KivllG~~~vGKTsl~~r~~~~~~~t~~-----~~--~~~~~~~---~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i   70 (195)
T d1svsa1           1 REVKLLLLGAGESGKSTIVKQMKIIHEAGTG-----IV--ETHFTFK---DLHFKMFDVGGQRSERKKWIHCFEGVTAII   70 (195)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHSCCCS-----EE--EEEEEET---TEEEEEEEECCSGGGGGGGGGGCTTCSEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCcc-----EE--EEEEEee---eeeeeeeccccccccccchhhcccCCceee
Confidence            4789999999999999999999887654332     21  1222322   278999999999999999999999999999


Q ss_pred             EEEeCCCHHhH-----------HHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCC---------------CcCCHHHHHH-
Q 028986          112 VVYDITSPDSF-----------NKAQYWVKELQKHGSPDIVMALVGNKADLHEK---------------REVPAQDGIE-  164 (200)
Q Consensus       112 ~v~d~~~~~s~-----------~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~---------------~~~~~~~~~~-  164 (200)
                      +++|.++..++           +....|...+........|+++++||.|+...               ......+... 
T Consensus        71 ~v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (195)
T d1svsa1          71 FCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAY  150 (195)
T ss_dssp             EEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHH
T ss_pred             eEEeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHH
Confidence            99999887654           33455656666555778999999999986211               1111222111 


Q ss_pred             ----HHHH------cCCeEEEecCCCCCCHHHHHHHHHHhhccc
Q 028986          165 ----YAEK------NGMFFIETSAKTADNINQLFEVLITCTSSY  198 (200)
Q Consensus       165 ----~~~~------~~~~~~~~S~~~~~~i~~~~~~i~~~~~~~  198 (200)
                          +...      ..+.++++||+++.||+++|+.+.+.+.+.
T Consensus       151 ~~~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il~~  194 (195)
T d1svsa1         151 IQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKN  194 (195)
T ss_dssp             HHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHHhc
Confidence                1111      234577899999999999999999887654

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.91  E-value=1e-23  Score=146.77  Aligned_cols=163  Identities=15%  Similarity=0.101  Sum_probs=105.1

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEec----CCcEEEEEEEeCCChhhhhhcccccccC
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQ----DSTTVKFEIWDTAGQERYAALAPLYYRG  106 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~D~~g~~~~~~~~~~~~~~  106 (200)
                      .+.++|+++|++++|||||+|+|++.......................    ......+.++|++|+.++.......+..
T Consensus         3 ~k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~l~~   82 (179)
T d1wb1a4           3 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADI   82 (179)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTS
T ss_pred             CCCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCCccccccccccccccccchhhhhhh
Confidence            567899999999999999999999743222111111111111111000    0112578999999999988888888899


Q ss_pred             ccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCC--HHHHHHHHHH----cCCeEEEecCCC
Q 028986          107 AAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVP--AQDGIEYAEK----NGMFFIETSAKT  180 (200)
Q Consensus       107 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~----~~~~~~~~S~~~  180 (200)
                      +|++++++|++....... ...+..+..   .++|+++|+||+|+....+..  .+....+...    .+.+++++||++
T Consensus        83 ~d~~ilv~d~~~g~~~~~-~~~~~~~~~---~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~iSA~~  158 (179)
T d1wb1a4          83 IDLALIVVDAKEGPKTQT-GEHMLILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKT  158 (179)
T ss_dssp             CCEEEEEEETTTCSCHHH-HHHHHHHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTT
T ss_pred             ccccccccccccccchhh-hhhhhhhhh---cCCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEccC
Confidence            999999999997633222 222233333   368899999999986543211  1111222222    245799999999


Q ss_pred             CCCHHHHHHHHHHhhcc
Q 028986          181 ADNINQLFEVLITCTSS  197 (200)
Q Consensus       181 ~~~i~~~~~~i~~~~~~  197 (200)
                      |.|++++++.|.+.+.+
T Consensus       159 g~gi~eL~~~I~~~l~~  175 (179)
T d1wb1a4         159 GFGVDELKNLIITTLNN  175 (179)
T ss_dssp             CTTHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHhcCCc
Confidence            99999999999988764

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.90  E-value=3.8e-23  Score=144.12  Aligned_cols=157  Identities=15%  Similarity=0.176  Sum_probs=111.7

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA  110 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  110 (200)
                      ++..||+++|++|||||||+++|.+..+.... ++.+....  .+...+   ..+..||+.+...+...+..+....+++
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~-~~~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHV-PTLHPTSE--ELTIAG---MTFTTFDLGGHIQARRVWKNYLPAINGI   84 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSCE--EEEETT---EEEEEEEECC----CCGGGGGGGGCSEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccee-ccccccee--EEEecc---cccccccccchhhhhhHHhhhhccccee
Confidence            55789999999999999999999998765432 33333332  233322   5688999999999999999999999999


Q ss_pred             EEEEeCCCHHhHHHHHHHHHHH-HHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHH-----------------cCCe
Q 028986          111 VVVYDITSPDSFNKAQYWVKEL-QKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEK-----------------NGMF  172 (200)
Q Consensus       111 i~v~d~~~~~s~~~~~~~~~~i-~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~-----------------~~~~  172 (200)
                      ++++|.++...+.....++... ......+.|+++++||.|+...  ....++.+....                 .++.
T Consensus        85 ~~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (186)
T d1f6ba_          85 VFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEA--ISEERLREMFGLYGQTTGKGSVSLKELNARPLE  162 (186)
T ss_dssp             EEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTC--CCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEE
T ss_pred             eeeeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCcccc--CCHHHHHHHHhhcccchhhhhhhHHHhhcCCCE
Confidence            9999999998887765544443 3344678999999999998553  234444443321                 2346


Q ss_pred             EEEecCCCCCCHHHHHHHHHHhh
Q 028986          173 FIETSAKTADNINQLFEVLITCT  195 (200)
Q Consensus       173 ~~~~S~~~~~~i~~~~~~i~~~~  195 (200)
                      +++|||++|+|++++|+||.+++
T Consensus       163 ~~~~SA~tg~Gi~e~~~~l~~~i  185 (186)
T d1f6ba_         163 VFMCSVLKRQGYGEGFRWMAQYI  185 (186)
T ss_dssp             EEECBTTTTBSHHHHHHHHHTTC
T ss_pred             EEEEeCCCCCCHHHHHHHHHHhh
Confidence            89999999999999999999875

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.90  E-value=1.9e-23  Score=146.11  Aligned_cols=162  Identities=22%  Similarity=0.192  Sum_probs=105.5

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCc-cccceeEEEEEEEecCCcEEEEEEEeCCChhhhhh-----------
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSK-VTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAA-----------   98 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-----------   98 (200)
                      ...+||+|+|++|+|||||+|+|++........ +..........+...+   ..+.++|+||......           
T Consensus         6 ~~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~---~~~~~~d~~g~~~~~~~~~~~~~~~~~   82 (186)
T d1mkya2           6 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDG---RKYVFVDTAGLRRKSRVEPRTVEKYSN   82 (186)
T ss_dssp             CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETT---EEEEESSCSCC-----------CCSCC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCC---ceeeeeccCCccccccccccccccchh
Confidence            457999999999999999999999865321111 1111111111222222   4688999999543221           


Q ss_pred             -cccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHc-----CCe
Q 028986           99 -LAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKN-----GMF  172 (200)
Q Consensus        99 -~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~  172 (200)
                       .....++.+|++++|+|++.+.. .....++..+...   +.|+++|+||+|+....+....+..+...+.     ..+
T Consensus        83 ~~~~~~~~~~dvii~v~d~~~~~~-~~~~~~~~~~~~~---~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (186)
T d1mkya2          83 YRVVDSIEKADVVVIVLDATQGIT-RQDQRMAGLMERR---GRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSP  158 (186)
T ss_dssp             HHHHHHHHHCSEEEEEEETTTCCC-HHHHHHHHHHHHT---TCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSC
T ss_pred             HHHHHHHhcCCEEEEeecccccch-hhHHHHHHHHHHc---CCceeeeccchhhhcchhhhhhhHHHHHHHHhcccCCCe
Confidence             22233567899999999986532 2223344444433   6789999999998766554445544444332     347


Q ss_pred             EEEecCCCCCCHHHHHHHHHHhhcccC
Q 028986          173 FIETSAKTADNINQLFEVLITCTSSYC  199 (200)
Q Consensus       173 ~~~~S~~~~~~i~~~~~~i~~~~~~~~  199 (200)
                      ++++||++|.|+++++++|.+.+.++.
T Consensus       159 i~~vSa~~g~gv~~L~~~i~~~~~~~~  185 (186)
T d1mkya2         159 LIFTSADKGWNIDRMIDAMNLAYASYT  185 (186)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHHhCC
Confidence            999999999999999999999888765

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.90  E-value=1.5e-23  Score=144.90  Aligned_cols=156  Identities=19%  Similarity=0.147  Sum_probs=98.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChh---------hhhhccccccc
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE---------RYAALAPLYYR  105 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~---------~~~~~~~~~~~  105 (200)
                      .|+|+|++|||||||+|+|++........ ..+.+.......+.. ....+.++|++|..         .+...+..++.
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~-~~~~t~~~~~~~~~~-~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~   79 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIVED-EEGVTRDPVQDTVEW-YGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIR   79 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEE-TTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcceecc-cCceeeccccccccc-cccccccccccceeeeeccccccccccccccccc
Confidence            58999999999999999999865432111 111111111111211 22678999999931         12233444567


Q ss_pred             CccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHH
Q 028986          106 GAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNIN  185 (200)
Q Consensus       106 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~  185 (200)
                      .+|+++++.|.+....... ..++..+...   ++|+++|+||+|+.....  .+...++.+.....++++||++|.|++
T Consensus        80 ~ad~i~~~~~~~~~~~~~~-~~~~~~l~~~---~~pviiv~NK~Dl~~~~~--~~~~~~~~~~~~~~~i~iSAk~g~gid  153 (171)
T d1mkya1          80 EADLVLFVVDGKRGITKED-ESLADFLRKS---TVDTILVANKAENLREFE--REVKPELYSLGFGEPIPVSAEHNINLD  153 (171)
T ss_dssp             TCSEEEEEEETTTCCCHHH-HHHHHHHHHH---TCCEEEEEESCCSHHHHH--HHTHHHHGGGSSCSCEECBTTTTBSHH
T ss_pred             cCcEEEEeecccccccccc-cccccccccc---cccccccchhhhhhhhhh--hHHHHHHHhcCCCCeEEEecCCCCCHH
Confidence            8999999999887543322 4455555544   578999999999853211  222222332334468999999999999


Q ss_pred             HHHHHHHHhhccc
Q 028986          186 QLFEVLITCTSSY  198 (200)
Q Consensus       186 ~~~~~i~~~~~~~  198 (200)
                      +++++|++.+.+.
T Consensus       154 ~L~~~i~~~l~e~  166 (171)
T d1mkya1         154 TMLETIIKKLEEK  166 (171)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHhCCCC
Confidence            9999999998765

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.89  E-value=5e-23  Score=143.69  Aligned_cols=151  Identities=24%  Similarity=0.235  Sum_probs=97.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCCh---------------hhhhhc
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ---------------ERYAAL   99 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~---------------~~~~~~   99 (200)
                      .|+++|++|||||||+|+|++........+  +.+.....+...     .+.++||||.               ..+...
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~~~~~~--g~T~~~~~~~~~-----~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~   74 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRP--GVTRKIIEIEWK-----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF   74 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCSSSSST--TCTTSCEEEEET-----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCC--CEeecccccccc-----cceecccCCceeccccccccccccchhhhhh
Confidence            589999999999999999998765322222  111111222221     3678999993               111222


Q ss_pred             ccccccCccEEEEEEeCCCHHhHHHH----------HHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHc
Q 028986          100 APLYYRGAAVAVVVYDITSPDSFNKA----------QYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKN  169 (200)
Q Consensus       100 ~~~~~~~~d~~i~v~d~~~~~s~~~~----------~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~  169 (200)
                      ....++.+|++++|+|+.........          ..+++.+..   .++|+++|+||+|+.+..+   .....+....
T Consensus        75 ~~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~---~~~p~iiv~NK~D~~~~~~---~~~~~~~~~~  148 (184)
T d2cxxa1          75 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE---LDIPTIVAVNKLDKIKNVQ---EVINFLAEKF  148 (184)
T ss_dssp             HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH---TTCCEEEEEECGGGCSCHH---HHHHHHHHHH
T ss_pred             hhhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHH---cCCCEEEEEeeeehhhhHH---HHHHHHHHHh
Confidence            34456779999999999865322111          122333333   3789999999999865432   1222222222


Q ss_pred             C-------CeEEEecCCCCCCHHHHHHHHHHhhccc
Q 028986          170 G-------MFFIETSAKTADNINQLFEVLITCTSSY  198 (200)
Q Consensus       170 ~-------~~~~~~S~~~~~~i~~~~~~i~~~~~~~  198 (200)
                      .       ..++++||++|.|+++++++|.+.+.++
T Consensus       149 ~~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~e~  184 (184)
T d2cxxa1         149 EVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRER  184 (184)
T ss_dssp             TCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred             cccccccCCeEEEEECCCCCCHHHHHHHHHHHccCC
Confidence            2       2488999999999999999999998875

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=2.8e-22  Score=141.57  Aligned_cols=157  Identities=18%  Similarity=0.196  Sum_probs=106.7

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEE
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVV  112 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~  112 (200)
                      .+||+++|.+|||||||+++|..   ...+.+|.+....  .+...   ...+.+||++|++.+...+..+++.++++++
T Consensus         2 ~iKivllG~~~vGKTsll~r~~f---~~~~~pTiG~~~~--~~~~~---~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~   73 (200)
T d1zcba2           2 LVKILLLGAGESGKSTFLKQMRI---IHGQDPTKGIHEY--DFEIK---NVPFKMVDVGGQRSERKRWFECFDSVTSILF   73 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH---HHSCCCCSSEEEE--EEEET---TEEEEEEEECC-------CTTSCTTCCEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHhc---CCCCCCeeeeEEE--EEeee---eeeeeeecccceeeecccccccccccceeEE
Confidence            58999999999999999999943   4455667775432  33332   2789999999999999999999999999999


Q ss_pred             EEeCCCHHh----------HHHHHHHHHH-HHHcCCCCCeEEEEEeCCCCCCC----------------CcCCHHHHHHH
Q 028986          113 VYDITSPDS----------FNKAQYWVKE-LQKHGSPDIVMALVGNKADLHEK----------------REVPAQDGIEY  165 (200)
Q Consensus       113 v~d~~~~~s----------~~~~~~~~~~-i~~~~~~~~p~iiv~nK~D~~~~----------------~~~~~~~~~~~  165 (200)
                      ++|.++..+          ++....++.. +......++|+++++||.|+.+.                .....+.+.++
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~  153 (200)
T d1zcba2          74 LVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKF  153 (200)
T ss_dssp             EEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHH
T ss_pred             EEEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHH
Confidence            999987532          3344444444 33344668999999999997321                11122333333


Q ss_pred             HHH-----------cCCeEEEecCCCCCCHHHHHHHHHHhhcc
Q 028986          166 AEK-----------NGMFFIETSAKTADNINQLFEVLITCTSS  197 (200)
Q Consensus       166 ~~~-----------~~~~~~~~S~~~~~~i~~~~~~i~~~~~~  197 (200)
                      ...           ..+.++++||+++.+|+++|+.+.+.+.+
T Consensus       154 ~~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~~  196 (200)
T d1zcba2         154 LVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILH  196 (200)
T ss_dssp             HHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHHH
Confidence            322           13456789999999999999998887654

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=6.4e-21  Score=135.37  Aligned_cols=118  Identities=17%  Similarity=0.254  Sum_probs=87.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhh-hcccccccCccEEEEE
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYA-ALAPLYYRGAAVAVVV  113 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-~~~~~~~~~~d~~i~v  113 (200)
                      +|+|+|++|||||||+++|++..+.... ++.+.+.  ....+.+...+.+.+||++|++.+. ..+..++..++++++|
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~~-~t~~~~~--~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v   78 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSS--AIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFV   78 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCBC-CCCSCEE--EEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCccc-CCeeEEE--EEEEEeeeeeeeeeeeeccccccccchhhhhhhhhccccceE
Confidence            6999999999999999999998776543 3444443  3344445555789999999998775 5677888999999999


Q ss_pred             EeCCCHHhH-HHHHHHH-HHHHH--cCCCCCeEEEEEeCCCCCCCC
Q 028986          114 YDITSPDSF-NKAQYWV-KELQK--HGSPDIVMALVGNKADLHEKR  155 (200)
Q Consensus       114 ~d~~~~~s~-~~~~~~~-~~i~~--~~~~~~p~iiv~nK~D~~~~~  155 (200)
                      +|+++..++ .....++ ..+..  .....+|+++|+||+|+....
T Consensus        79 ~D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a~  124 (207)
T d2fh5b1          79 VDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAK  124 (207)
T ss_dssp             EETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCC
T ss_pred             EEcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCCC
Confidence            999987654 4443343 33332  224568999999999997643

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.87  E-value=6.8e-23  Score=143.24  Aligned_cols=157  Identities=17%  Similarity=0.073  Sum_probs=100.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcc-------cccccCc
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALA-------PLYYRGA  107 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~-------~~~~~~~  107 (200)
                      +|+|+|++|||||||+|+|++........+..+.........+.++.  .+.+|||||..+.....       ...+..+
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~   80 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGR--SFVMADLPGLIEGAHQGVGLGHQFLRHIERT   80 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSC--EEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEecCCc--EEEEecCCCcccCchHHHHHHHHHHHHHHHh
Confidence            69999999999999999999866433322222233333334444444  68899999964322211       1223557


Q ss_pred             cEEEEEEeCCCHHhH---HHHHHHH--HHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHc--CCeEEEecCCC
Q 028986          108 AVAVVVYDITSPDSF---NKAQYWV--KELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKN--GMFFIETSAKT  180 (200)
Q Consensus       108 d~~i~v~d~~~~~s~---~~~~~~~--~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~S~~~  180 (200)
                      +.++++++.......   +....+.  .........++|+++|+||+|+....    +....+.+.+  +.+++++||++
T Consensus        81 ~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~----~~~~~~~~~~~~~~~v~~iSA~~  156 (185)
T d1lnza2          81 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA----ENLEAFKEKLTDDYPVFPISAVT  156 (185)
T ss_dssp             CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH----HHHHHHHHHCCSCCCBCCCSSCC
T ss_pred             hhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHH----HHHHHHHHHhccCCcEEEEECCC
Confidence            888888877644222   1111111  11222224468999999999986532    2333444433  67899999999


Q ss_pred             CCCHHHHHHHHHHhhcc
Q 028986          181 ADNINQLFEVLITCTSS  197 (200)
Q Consensus       181 ~~~i~~~~~~i~~~~~~  197 (200)
                      |.|++++++.|.+.+.+
T Consensus       157 g~Gi~~L~~~i~~~L~~  173 (185)
T d1lnza2         157 REGLRELLFEVANQLEN  173 (185)
T ss_dssp             SSTTHHHHHHHHHHHTS
T ss_pred             CCCHHHHHHHHHHhhhh
Confidence            99999999999998864

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.87  E-value=2.2e-22  Score=137.32  Aligned_cols=149  Identities=20%  Similarity=0.261  Sum_probs=97.2

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcCCCCCCCc-cccceeEEEEEEEecCCcEEEEEEEeCCChhhhh---------hccccc
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSK-VTVGASFLSQTIALQDSTTVKFEIWDTAGQERYA---------ALAPLY  103 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~---------~~~~~~  103 (200)
                      +||+++|.+|||||||+|+|++........ +..........+...+   ..+.+||+||.....         ......
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~   77 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG---ILFRIVDTAGVRSETNDLVERLGIERTLQE   77 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT---EEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCC---eeEEeccccccccCCccHHHHHHHHHHHHH
Confidence            689999999999999999999865332211 1111112222223322   578999999932110         111223


Q ss_pred             ccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCC
Q 028986          104 YRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADN  183 (200)
Q Consensus       104 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~  183 (200)
                      +..+|++++|+|++++...+....+ ..+     ...++++++||.|+.....  .++.... ...+.+++++||++|.|
T Consensus        78 ~~~ad~ii~v~d~~~~~~~~~~~~~-~~~-----~~~~~i~~~~k~d~~~~~~--~~~~~~~-~~~~~~~~~vSA~~g~g  148 (160)
T d1xzpa2          78 IEKADIVLFVLDASSPLDEEDRKIL-ERI-----KNKRYLVVINKVDVVEKIN--EEEIKNK-LGTDRHMVKISALKGEG  148 (160)
T ss_dssp             HHHCSEEEEEEETTSCCCHHHHHHH-HHH-----TTSSEEEEEEECSSCCCCC--HHHHHHH-HTCSTTEEEEEGGGTCC
T ss_pred             HHhCCEEEEEEeCCCCcchhhhhhh-hhc-----ccccceeeeeeccccchhh--hHHHHHH-hCCCCcEEEEECCCCCC
Confidence            5679999999999987654433222 111     2567899999999876432  3332222 23456899999999999


Q ss_pred             HHHHHHHHHHh
Q 028986          184 INQLFEVLITC  194 (200)
Q Consensus       184 i~~~~~~i~~~  194 (200)
                      +++++++|.++
T Consensus       149 i~~L~~~I~ke  159 (160)
T d1xzpa2         149 LEKLEESIYRE  159 (160)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhc
Confidence            99999998764

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.87  E-value=4.4e-21  Score=134.99  Aligned_cols=158  Identities=16%  Similarity=0.127  Sum_probs=94.6

Q ss_pred             CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCCh----------h---hh
Q 028986           30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ----------E---RY   96 (200)
Q Consensus        30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~----------~---~~   96 (200)
                      ...-.+|+|+|++|||||||+|+|++...........+.+......... .   .+.+.|+++.          +   ..
T Consensus        20 ~~~~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~~-~---~~~~~d~~~~~~~~~~~~~~~~~~~~   95 (195)
T d1svia_          20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIN-D---ELHFVDVPGYGFAKVSKSEREAWGRM   95 (195)
T ss_dssp             CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEET-T---TEEEEECCCBCCCSSCHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeeccccccc-c---cceEEEEEeeccccccccccchhhhH
Confidence            3344589999999999999999999864322222222222222222222 1   2445666651          1   11


Q ss_pred             hhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHH----cCCe
Q 028986           97 AALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEK----NGMF  172 (200)
Q Consensus        97 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~----~~~~  172 (200)
                      ...+......+|++++++|++.+.. .....+++.+...   ++|+++|+||+|+....+. .+....+.+.    ...+
T Consensus        96 ~~~~~~~~~~~~~vi~viD~~~~~~-~~~~~~~~~l~~~---~~piivv~NK~D~~~~~~~-~~~~~~~~~~l~~~~~~~  170 (195)
T d1svia_          96 IETYITTREELKAVVQIVDLRHAPS-NDDVQMYEFLKYY---GIPVIVIATKADKIPKGKW-DKHAKVVRQTLNIDPEDE  170 (195)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSCCC-HHHHHHHHHHHHT---TCCEEEEEECGGGSCGGGH-HHHHHHHHHHHTCCTTSE
T ss_pred             Hhhhhccccchhhhhhhhhcccccc-ccccccccccccc---cCcceechhhccccCHHHH-HHHHHHHHHHhcccCCCC
Confidence            1222334556899999999986532 2224455555544   6789999999998654332 2222323232    3457


Q ss_pred             EEEecCCCCCCHHHHHHHHHHhhc
Q 028986          173 FIETSAKTADNINQLFEVLITCTS  196 (200)
Q Consensus       173 ~~~~S~~~~~~i~~~~~~i~~~~~  196 (200)
                      ++++||++|.|+++++++|.+.+.
T Consensus       171 ~~~~SA~~~~gi~el~~~i~~~l~  194 (195)
T d1svia_         171 LILFSSETKKGKDEAWGAIKKMIN  194 (195)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHT
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHhC
Confidence            999999999999999999998874

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.86  E-value=7.9e-22  Score=141.99  Aligned_cols=161  Identities=19%  Similarity=0.172  Sum_probs=103.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEe---------------cCCcEEEEEEEeCCChhhhhhc
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIAL---------------QDSTTVKFEIWDTAGQERYAAL   99 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~l~D~~g~~~~~~~   99 (200)
                      .|+|+|++++|||||+++|++......................               ......++.++||||+..+...
T Consensus         7 ~IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~~   86 (227)
T d1g7sa4           7 IVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTL   86 (227)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTS
T ss_pred             EEEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceeccccc
Confidence            3999999999999999999874221111111111100111100               0112247899999999998888


Q ss_pred             ccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCH--------------------
Q 028986          100 APLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPA--------------------  159 (200)
Q Consensus       100 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~--------------------  159 (200)
                      ....+..+|++|+|+|+..+-.... ...+..+..   .++|+++|+||+|+........                    
T Consensus        87 ~~~~~~~~D~~ilVvda~~g~~~~~-~~~~~~~~~---~~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  162 (227)
T d1g7sa4          87 RKRGGALADLAILIVDINEGFKPQT-QEALNILRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLD  162 (227)
T ss_dssp             BCSSSBSCSEEEEEEETTTCCCHHH-HHHHHHHHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHH
T ss_pred             chhcccccceEEEEEecccCcccch-hHHHHHhhc---CCCeEEEEEECccCCCchhhhhhHHHHHhhhcchHHHHHHHH
Confidence            8888999999999999987533222 333344443   3678999999999865422110                    


Q ss_pred             HHHH----HHHHH--------------cCCeEEEecCCCCCCHHHHHHHHHHhhcccC
Q 028986          160 QDGI----EYAEK--------------NGMFFIETSAKTADNINQLFEVLITCTSSYC  199 (200)
Q Consensus       160 ~~~~----~~~~~--------------~~~~~~~~S~~~~~~i~~~~~~i~~~~~~~~  199 (200)
                      ....    .+...              ..++++++||++|.|++++++.|.+..++++
T Consensus       163 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~~~~  220 (227)
T d1g7sa4         163 TKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYL  220 (227)
T ss_dssp             HHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHHHHH
Confidence            0000    11110              0136899999999999999999988877654

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.85  E-value=2.9e-20  Score=130.76  Aligned_cols=165  Identities=18%  Similarity=0.192  Sum_probs=107.7

Q ss_pred             CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCc-----cccceeEEEEEEE------------------ecCCcEEEEE
Q 028986           30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSK-----VTVGASFLSQTIA------------------LQDSTTVKFE   86 (200)
Q Consensus        30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~-----~~~~~~~~~~~~~------------------~~~~~~~~~~   86 (200)
                      ++..++|+++|+.++|||||+++|++........     .+....+......                  ........+.
T Consensus         2 ~~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (195)
T d1kk1a3           2 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS   81 (195)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred             CCCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEe
Confidence            4677899999999999999999998743221111     1111111111111                  0111235689


Q ss_pred             EEeCCChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcC--CHHHHHH
Q 028986           87 IWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREV--PAQDGIE  164 (200)
Q Consensus        87 l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~--~~~~~~~  164 (200)
                      ++|+||+..|.......+..+|++++++|+.+..........+..+....  ..++++++||+|+.+....  ..+...+
T Consensus        82 ~iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~~--~~~iiv~inK~D~~d~~~~~~~~~~~~~  159 (195)
T d1kk1a3          82 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIG--QKNIIIAQNKIELVDKEKALENYRQIKE  159 (195)
T ss_dssp             EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHH
T ss_pred             eeccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHhc--CccceeeeecccchhhHHHHHHHHHHHH
Confidence            99999999999888888899999999999997632233333344444332  2357888999998654221  1122233


Q ss_pred             HHHHc---CCeEEEecCCCCCCHHHHHHHHHHhhc
Q 028986          165 YAEKN---GMFFIETSAKTADNINQLFEVLITCTS  196 (200)
Q Consensus       165 ~~~~~---~~~~~~~S~~~~~~i~~~~~~i~~~~~  196 (200)
                      +....   +++++++||++|.|++++++.|.+.+.
T Consensus       160 ~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~iP  194 (195)
T d1kk1a3         160 FIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP  194 (195)
T ss_dssp             HHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             HhccccCCCCeEEEEECCCCCCHHHHHHHHHHHCc
Confidence            33322   367999999999999999999887653

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.84  E-value=5.5e-20  Score=130.30  Aligned_cols=164  Identities=18%  Similarity=0.141  Sum_probs=104.1

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCC-----ccccceeEEEEEEEec-----------------------CCcE
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTS-----KVTVGASFLSQTIALQ-----------------------DSTT   82 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~-----------------------~~~~   82 (200)
                      ++.++|+|+|+.++|||||+++|++.......     ................                       ....
T Consensus         6 ~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (205)
T d2qn6a3           6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFL   85 (205)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEE
T ss_pred             CCCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccce
Confidence            55689999999999999999999873221100     0000011111111000                       1112


Q ss_pred             EEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCC--HH
Q 028986           83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVP--AQ  160 (200)
Q Consensus        83 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~--~~  160 (200)
                      .++.++|+||+..|.......+..+|++|+|+|+.+.-.....+..+..+....  -.|+++++||+|+....+..  ..
T Consensus        86 r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~~--i~~iIV~vNK~Dl~~~~~~~~~~~  163 (205)
T d2qn6a3          86 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEEALSQYR  163 (205)
T ss_dssp             EEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTT--CCCEEEEEECGGGSCHHHHHHHHH
T ss_pred             EEEEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHHcC--CceeeeccccCCCccchHHHHHHH
Confidence            478999999999998888888889999999999987632222233333333331  24788999999986543211  11


Q ss_pred             HHHHHHHHc---CCeEEEecCCCCCCHHHHHHHHHHhhc
Q 028986          161 DGIEYAEKN---GMFFIETSAKTADNINQLFEVLITCTS  196 (200)
Q Consensus       161 ~~~~~~~~~---~~~~~~~S~~~~~~i~~~~~~i~~~~~  196 (200)
                      +...+....   +++++++||++|.|++++++.|.+.+.
T Consensus       164 ~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~ip  202 (205)
T d2qn6a3         164 QIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIK  202 (205)
T ss_dssp             HHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             HHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhCC
Confidence            122222221   468999999999999999999887765

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=5e-20  Score=127.68  Aligned_cols=158  Identities=15%  Similarity=0.101  Sum_probs=101.8

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChh---------hhhhccccc
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE---------RYAALAPLY  103 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~---------~~~~~~~~~  103 (200)
                      --.|+|+|.+|||||||+|+|++.......................+.  ..+..+|++|..         .........
T Consensus         5 ~~~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (179)
T d1egaa1           5 CGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAASSS   82 (179)
T ss_dssp             EEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTTSC
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCC--ceeEeecCCCceecchhhhhhhhhhccccc
Confidence            346899999999999999999987543222222222222222222222  356778888731         122333444


Q ss_pred             ccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcC-CeEEEecCCCCC
Q 028986          104 YRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNG-MFFIETSAKTAD  182 (200)
Q Consensus       104 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~S~~~~~  182 (200)
                      ...+++++++.|.......  ...+...+.   ....|.++|+||.|..................++ .+++++||++|.
T Consensus        83 ~~~~~~~l~~~d~~~~~~~--~~~~~~~l~---~~~~~~i~v~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~  157 (179)
T d1egaa1          83 IGDVELVIFVVEGTRWTPD--DEMVLNKLR---EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGL  157 (179)
T ss_dssp             CCCEEEEEEEEETTCCCHH--HHHHHHHHH---SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTT
T ss_pred             hhhcceeEEEEecCccchh--HHHHHHHhh---hccCceeeeeeeeeccchhhhhhhHhhhhhhhcCCCCEEEEeCcCCC
Confidence            5678899999998764222  222223333   3356789999999987765443444455555555 489999999999


Q ss_pred             CHHHHHHHHHHhhcc
Q 028986          183 NINQLFEVLITCTSS  197 (200)
Q Consensus       183 ~i~~~~~~i~~~~~~  197 (200)
                      |+++++++|.+.+.+
T Consensus       158 gi~~L~~~i~~~lpe  172 (179)
T d1egaa1         158 NVDTIAAIVRKHLPE  172 (179)
T ss_dssp             THHHHHHHHHTTCCB
T ss_pred             CHHHHHHHHHHhCCC
Confidence            999999999998865

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.83  E-value=3.9e-21  Score=137.81  Aligned_cols=157  Identities=18%  Similarity=0.182  Sum_probs=111.1

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA  110 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  110 (200)
                      +...||+++|+.|||||||+++|....+    .+|.+...  ..+...+   +.+.+||++|++.++..|..++..++++
T Consensus         4 k~~~KilllG~~~vGKTsll~~~~~~~~----~pTiG~~~--~~~~~~~---~~~~~~D~~Gq~~~r~~w~~~~~~~~~i   74 (221)
T d1azta2           4 RATHRLLLLGAGESGKSTIVKQMRILHV----VLTSGIFE--TKFQVDK---VNFHMFDVGGQRDERRKWIQCFNDVTAI   74 (221)
T ss_dssp             HHSEEEEEECSTTSSHHHHHHHHHHHHC----CCCCSCEE--EEEEETT---EEEEEEECCCSTTTTTGGGGGCTTCSEE
T ss_pred             hhcCEEEEECCCCCCHHHHHHHHhcCCc----CCCCCeEE--EEEEECc---EEEEEEecCccceeccchhhhcccccce
Confidence            4678999999999999999999987644    34555443  2333333   7899999999999999999999999999


Q ss_pred             EEEEeCCCHH----------hH-HHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCc----C------------------
Q 028986          111 VVVYDITSPD----------SF-NKAQYWVKELQKHGSPDIVMALVGNKADLHEKRE----V------------------  157 (200)
Q Consensus       111 i~v~d~~~~~----------s~-~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~----~------------------  157 (200)
                      ++++|.++.+          .+ +....|...+......++|+++++||+|+.+.+.    .                  
T Consensus        75 i~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~~  154 (221)
T d1azta2          75 IFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDA  154 (221)
T ss_dssp             EEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTTC
T ss_pred             EEEEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhhhhccCcccHHHhCccccccCCcccc
Confidence            9999998542          22 3334444445544466899999999999843210    0                  


Q ss_pred             --------CHHHHHHHH-----HHc--------CCeEEEecCCCCCCHHHHHHHHHHhhc
Q 028986          158 --------PAQDGIEYA-----EKN--------GMFFIETSAKTADNINQLFEVLITCTS  196 (200)
Q Consensus       158 --------~~~~~~~~~-----~~~--------~~~~~~~S~~~~~~i~~~~~~i~~~~~  196 (200)
                              ....+..+.     +..        .+...++||.++.+++.+|..+.+.+.
T Consensus       155 ~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v~d~I~  214 (221)
T d1azta2         155 TPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQ  214 (221)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHHHHHHHTTHHHHH
T ss_pred             cccCCCchhHHHHHHHHHHHHHHHhccCCCCCCceeeeecceeccHHHHHHHHHHHHHHH
Confidence                    012222222     111        234568999999999999988766554

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.82  E-value=4.9e-20  Score=129.16  Aligned_cols=161  Identities=14%  Similarity=0.107  Sum_probs=105.3

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHcC-----CCC---------CCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhh
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVRG-----QFD---------PTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYA   97 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~~-----~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~   97 (200)
                      +.+||+++|+.++|||||+++|+..     ...         .......+.+.....+.+.... ..+.++|+||+..|.
T Consensus         2 p~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~-~~~~~iDtPGh~~f~   80 (196)
T d1d2ea3           2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAA-RHYAHTDCPGHADYV   80 (196)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSS-CEEEEEECSSHHHHH
T ss_pred             CCcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEece-eeEEeecCcchHHHH
Confidence            4689999999999999999999751     000         0011112222222222232222 579999999999999


Q ss_pred             hcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCC---HHHHHHHHHHcC----
Q 028986           98 ALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVP---AQDGIEYAEKNG----  170 (200)
Q Consensus        98 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~---~~~~~~~~~~~~----  170 (200)
                      ......+..+|++++|+|+.+...- +....+..+....  ..|+|+++||+|+....+..   ..++..+....+    
T Consensus        81 ~~~~~~~~~aD~allVVda~~G~~~-QT~~~~~~a~~~~--~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~  157 (196)
T d1d2ea3          81 KNMITGTAPLDGCILVVAANDGPMP-QTREHLLLARQIG--VEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGE  157 (196)
T ss_dssp             HHHHHTSSCCSEEEEEEETTTCSCH-HHHHHHHHHHHTT--CCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred             HHHHHHHhhcCeEEEEEEcCCCCch-hHHHHHHHHHHhc--CCcEEEEEecccccccHHHHHHHHHHHHHHHHHhCCCcc
Confidence            8888888999999999999986332 2233334444332  35688999999986542211   123334444333    


Q ss_pred             -CeEEEecCCCC----------CCHHHHHHHHHHhhc
Q 028986          171 -MFFIETSAKTA----------DNINQLFEVLITCTS  196 (200)
Q Consensus       171 -~~~~~~S~~~~----------~~i~~~~~~i~~~~~  196 (200)
                       ++++++|+++|          .++.++++.|.+.+.
T Consensus       158 ~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~iP  194 (196)
T d1d2ea3         158 ETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP  194 (196)
T ss_dssp             TSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred             cCEEEEEEccccccccCcccccCCHHHHHHHHHhhCC
Confidence             57999999988          588888888876553

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.76  E-value=6e-19  Score=124.52  Aligned_cols=141  Identities=11%  Similarity=0.076  Sum_probs=90.2

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHcC------CCCCCC-----------ccccceeEEEEEEEecCCcEEEEEEEeCCChh
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVRG------QFDPTS-----------KVTVGASFLSQTIALQDSTTVKFEIWDTAGQE   94 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~~------~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~   94 (200)
                      +.+||+++|+.++|||||+++|+..      ......           ......+.....+...+   .++.++||||+.
T Consensus         2 ~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~---~~i~iiDtPGh~   78 (204)
T d2c78a3           2 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAK---RHYSHVDCPGHA   78 (204)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSS---CEEEEEECCCSG
T ss_pred             CCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCC---eEEEEEeCCCch
Confidence            5689999999999999999999731      000000           00112222233333322   478999999999


Q ss_pred             hhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCe-EEEEEeCCCCCCCCcCC---HHHHHHHHHHc-
Q 028986           95 RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIV-MALVGNKADLHEKREVP---AQDGIEYAEKN-  169 (200)
Q Consensus        95 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~iiv~nK~D~~~~~~~~---~~~~~~~~~~~-  169 (200)
                      .|.......+..+|++|+|+|+.+....+..+ .+..+...   ++| +++++||+|+....+..   .+++..+.... 
T Consensus        79 df~~~~~~~~~~aD~avlVvda~~Gv~~qt~~-~~~~~~~~---gi~~iiv~iNK~D~~~~~~~~~~~~~~i~~~l~~~~  154 (204)
T d2c78a3          79 DYIKNMITGAAQMDGAILVVSAADGPMPQTRE-HILLARQV---GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYE  154 (204)
T ss_dssp             GGHHHHHHHHTTCSSEEEEEETTTCCCHHHHH-HHHHHHHT---TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTT
T ss_pred             hhHHHHHHHHHHCCEEEEEEECCCCCcHHHHH-HHHHHHHc---CCCeEEEEEEecccCCCHHHHHHHHHHHHHHHHhcC
Confidence            99988888899999999999999874443333 33444433   554 77789999986543211   12333333333 


Q ss_pred             ----CCeEEEecCC
Q 028986          170 ----GMFFIETSAK  179 (200)
Q Consensus       170 ----~~~~~~~S~~  179 (200)
                          .+++++.|+.
T Consensus       155 ~~~~~i~~i~~sa~  168 (204)
T d2c78a3         155 FPGDEVPVIRGSAL  168 (204)
T ss_dssp             SCTTTSCEEECCHH
T ss_pred             CCcccceeeeeech
Confidence                2468888875

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.74  E-value=1.3e-17  Score=118.76  Aligned_cols=151  Identities=20%  Similarity=0.202  Sum_probs=96.3

Q ss_pred             CCCCceeeEEEEcCCCCcHHHHHHHHHcCCC--CC-------------------------------CCccccceeEEEEE
Q 028986           28 DAKNLRVKLVLLGDSGVGKSCIVLRFVRGQF--DP-------------------------------TSKVTVGASFLSQT   74 (200)
Q Consensus        28 ~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~--~~-------------------------------~~~~~~~~~~~~~~   74 (200)
                      .+++..+||+++|+.++|||||+.+|+....  ..                               ..............
T Consensus         4 ~~~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~   83 (222)
T d1zunb3           4 HERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRY   83 (222)
T ss_dssp             TTSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEE
T ss_pred             cccCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEE
Confidence            4567888999999999999999999964211  00                               00000111111111


Q ss_pred             EEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCe-EEEEEeCCCCCC
Q 028986           75 IALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIV-MALVGNKADLHE  153 (200)
Q Consensus        75 ~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~iiv~nK~D~~~  153 (200)
                      ...   ...++.++|+||+..+..........+|++++|+|+.....-+. ...+..+...   +++ +++++||+|+..
T Consensus        84 ~~~---~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt-~e~~~~~~~~---gv~~iiv~vNK~D~~~  156 (222)
T d1zunb3          84 FST---AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQT-RRHSYIASLL---GIKHIVVAINKMDLNG  156 (222)
T ss_dssp             EEC---SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHH-HHHHHHHHHT---TCCEEEEEEECTTTTT
T ss_pred             Eec---cceEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccch-HHHHHHHHHc---CCCEEEEEEEcccccc
Confidence            111   12579999999999999888888899999999999987632222 2222333332   433 888999999976


Q ss_pred             CCcCCHH----HHHHHHHHcC-----CeEEEecCCCCCCHH
Q 028986          154 KREVPAQ----DGIEYAEKNG-----MFFIETSAKTADNIN  185 (200)
Q Consensus       154 ~~~~~~~----~~~~~~~~~~-----~~~~~~S~~~~~~i~  185 (200)
                      ..+...+    ++..++...+     ++++++||.+|.|+.
T Consensus       157 ~~~~~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~  197 (222)
T d1zunb3         157 FDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVV  197 (222)
T ss_dssp             SCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTS
T ss_pred             ccceehhhhHHHHhhhhHhhccCCCceEEEEEEcccCccCC
Confidence            4332222    2333444443     368999999999873

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.74  E-value=1.2e-17  Score=118.29  Aligned_cols=117  Identities=15%  Similarity=0.187  Sum_probs=79.7

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhccccc----ccCc
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLY----YRGA  107 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~----~~~~  107 (200)
                      ++.+|+|+|++|||||||+|+|++..+.+..    +.......+   ......+.+||+||++.+...+..+    ...+
T Consensus         2 ~~p~V~lvG~~n~GKTSLln~l~~~~~~~~t----t~~~~~~~~---~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~   74 (209)
T d1nrjb_           2 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTV----VSQEPLSAA---DYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFV   74 (209)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSSCCCBC----CCSSCEEET---TGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCeE----EecceEEEE---EeCCeEEEEEecccccchhhHHHHHHHHHhhhc
Confidence            3558999999999999999999998764322    212112222   2222468999999987665444433    4556


Q ss_pred             cEEEEEEeCCC-HHhHHHHHHHH----HHHHHcCCCCCeEEEEEeCCCCCCCC
Q 028986          108 AVAVVVYDITS-PDSFNKAQYWV----KELQKHGSPDIVMALVGNKADLHEKR  155 (200)
Q Consensus       108 d~~i~v~d~~~-~~s~~~~~~~~----~~i~~~~~~~~p~iiv~nK~D~~~~~  155 (200)
                      +.+++++|+.+ ..+++....|+    ..+......++|+++|+||+|+....
T Consensus        75 ~~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~~  127 (209)
T d1nrjb_          75 KGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR  127 (209)
T ss_dssp             EEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred             cccceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeecccccC
Confidence            88999999774 44455444444    44455567789999999999986543

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.72  E-value=1.9e-17  Score=115.06  Aligned_cols=162  Identities=15%  Similarity=0.067  Sum_probs=86.5

Q ss_pred             CCCCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCC-h-------hhhh--
Q 028986           28 DAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAG-Q-------ERYA--   97 (200)
Q Consensus        28 ~~~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g-~-------~~~~--   97 (200)
                      -+.+..++|+++|.+|||||||+|+|++........................+  ......+.++ .       ....  
T Consensus        11 ~p~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~   88 (188)
T d1puia_          11 LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADG--KRLVDLPGYGYAEVPEEMKRKWQRA   88 (188)
T ss_dssp             SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETT--EEEEECCCCC------CCHHHHHHH
T ss_pred             CCCccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccc--cceeeeecccccchhhhhhhhhhhh
Confidence            34677899999999999999999999987654333322222222222222222  1222222222 1       1111  


Q ss_pred             -hcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCC--HHHHHHHHHHc--CCe
Q 028986           98 -ALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVP--AQDGIEYAEKN--GMF  172 (200)
Q Consensus        98 -~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~--~~~  172 (200)
                       ..........+.++.+.+......... ..++..+...   ..++++++||+|+.......  .+...+.....  ..+
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~~~  164 (188)
T d1puia_          89 LGEYLEKRQSLQGLVVLMDIRHPLKDLD-QQMIEWAVDS---NIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQ  164 (188)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSCCCHHH-HHHHHHHHHT---TCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEE
T ss_pred             hhhhhhhhhheeEEEEeecccccchhHH-HHHHHHhhhc---cccccchhhhhhccCHHHHHHHHHHHHHHHHhhCCCCc
Confidence             111222334556666677665432222 3344444433   56789999999986542211  11112222222  347


Q ss_pred             EEEecCCCCCCHHHHHHHHHHhh
Q 028986          173 FIETSAKTADNINQLFEVLITCT  195 (200)
Q Consensus       173 ~~~~S~~~~~~i~~~~~~i~~~~  195 (200)
                      ++++||++|.|++++++.|.+.+
T Consensus       165 ~i~vSA~~g~Gid~L~~~i~~~~  187 (188)
T d1puia_         165 VETFSSLKKQGVDKLRQKLDTWF  187 (188)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHh
Confidence            89999999999999999987764

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.68  E-value=6.5e-16  Score=112.77  Aligned_cols=111  Identities=15%  Similarity=0.178  Sum_probs=77.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCC--CCC----------------CCccccceeEEEEEEEecCCcEEEEEEEeCCChhhh
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQ--FDP----------------TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERY   96 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~--~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~   96 (200)
                      ||+|+|+.++|||||+.+|+...  ...                ..............+.+.+   .+++++||||+.+|
T Consensus         8 ni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~---~~~n~iDtPG~~dF   84 (276)
T d2bv3a2           8 NIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD---HRINIIDAPGHVDF   84 (276)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETT---EEEEEECCCSSSSC
T ss_pred             EEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCC---eEEEEecCCchhhh
Confidence            79999999999999999996421  100                0000111111122222322   68999999999999


Q ss_pred             hhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCC
Q 028986           97 AALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLH  152 (200)
Q Consensus        97 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~  152 (200)
                      .......++.+|++|+|+|+.+.-.....+-| ....   ..++|.++++||.|..
T Consensus        85 ~~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w-~~a~---~~~lP~i~fINKmDr~  136 (276)
T d2bv3a2          85 TIEVERSMRVLDGAIVVFDSSQGVEPQSETVW-RQAE---KYKVPRIAFANKMDKT  136 (276)
T ss_dssp             STTHHHHHHHCCEEEEEEETTTSSCHHHHHHH-HHHH---TTTCCEEEEEECTTST
T ss_pred             HHHHHHHHHhhhheEEeccccCCcchhHHHHH-HHHH---HcCCCEEEEEeccccc
Confidence            99889999999999999999987544443433 3333   4489999999999985

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.68  E-value=3.1e-17  Score=118.13  Aligned_cols=149  Identities=13%  Similarity=0.126  Sum_probs=96.3

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCC--CC-----------------------------CCCccccceeEEEEEEEecC
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQ--FD-----------------------------PTSKVTVGASFLSQTIALQD   79 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~--~~-----------------------------~~~~~~~~~~~~~~~~~~~~   79 (200)
                      +..++|+++|+.++|||||+.+|+...  ..                             .......+.+.....+...+
T Consensus         4 k~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~   83 (239)
T d1f60a3           4 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK   83 (239)
T ss_dssp             CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred             CCccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccCC
Confidence            456899999999999999999996310  00                             00001112222233333333


Q ss_pred             CcEEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHHhH------HHHHHHHHHHHHcCCCCCe-EEEEEeCCCCC
Q 028986           80 STTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSF------NKAQYWVKELQKHGSPDIV-MALVGNKADLH  152 (200)
Q Consensus        80 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~------~~~~~~~~~i~~~~~~~~p-~iiv~nK~D~~  152 (200)
                         .++.++|+||+.+|...+..-+..+|++|+|+|+....--      .+....+......   ++| +|+++||+|+.
T Consensus        84 ---~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~~---gv~~iiv~iNKmD~~  157 (239)
T d1f60a3          84 ---YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTL---GVRQLIVAVNKMDSV  157 (239)
T ss_dssp             ---EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHT---TCCEEEEEEECGGGG
T ss_pred             ---EEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHHc---CCCeEEEEEECCCCC
Confidence               6899999999999999999999999999999999865211      1222222333322   444 78899999986


Q ss_pred             CCCcCCH----HHHHHHHHHcC-----CeEEEecCCCCCCHH
Q 028986          153 EKREVPA----QDGIEYAEKNG-----MFFIETSAKTADNIN  185 (200)
Q Consensus       153 ~~~~~~~----~~~~~~~~~~~-----~~~~~~S~~~~~~i~  185 (200)
                      ...+...    +++..+....+     ++++++|+..|.|+-
T Consensus       158 ~~d~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~  199 (239)
T d1f60a3         158 KWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMI  199 (239)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTT
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCcce
Confidence            6433222    23334444433     468999999998763

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.65  E-value=7.4e-16  Score=111.32  Aligned_cols=153  Identities=14%  Similarity=0.104  Sum_probs=83.3

Q ss_pred             CCceeeEEEEcCCCCcHHHHHHHHHcCCCCC-------------------------------CCccccceeEEEEEEEec
Q 028986           30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDP-------------------------------TSKVTVGASFLSQTIALQ   78 (200)
Q Consensus        30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~   78 (200)
                      .+..++|+|+|+.++|||||+.+|+...-..                               ..............+.  
T Consensus        21 ~k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~--   98 (245)
T d1r5ba3          21 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFE--   98 (245)
T ss_dssp             CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEE--
T ss_pred             CCCceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCccccccccccc--
Confidence            3567899999999999999999995311000                               0000000000001111  


Q ss_pred             CCcEEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHHhHH------HHHHHHHHHHHcCCCCC-eEEEEEeCCCC
Q 028986           79 DSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFN------KAQYWVKELQKHGSPDI-VMALVGNKADL  151 (200)
Q Consensus        79 ~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~------~~~~~~~~i~~~~~~~~-p~iiv~nK~D~  151 (200)
                       ....++.++|+||+..+..........+|++++|+|+.....-.      .....+..+...   ++ ++++++||+|+
T Consensus        99 -~~~~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~~---~i~~iiv~iNKmD~  174 (245)
T d1r5ba3          99 -TEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQ---GINHLVVVINKMDE  174 (245)
T ss_dssp             -CSSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHT---TCSSEEEEEECTTS
T ss_pred             -cccceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHHc---CCCeEEEEEEcCCC
Confidence             12257999999999999998888899999999999998752110      122222333332   34 37899999998


Q ss_pred             CCCCc--CCHHHH----HHHHHHc-------CCeEEEecCCCCCCHHHHH
Q 028986          152 HEKRE--VPAQDG----IEYAEKN-------GMFFIETSAKTADNINQLF  188 (200)
Q Consensus       152 ~~~~~--~~~~~~----~~~~~~~-------~~~~~~~S~~~~~~i~~~~  188 (200)
                      .....  ...+++    ..+....       .++++++||++|+|+.+++
T Consensus       175 ~~~~~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~  224 (245)
T d1r5ba3         175 PSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  224 (245)
T ss_dssp             TTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             CccchhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccch
Confidence            64321  111222    2222222       3479999999999997754

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.64  E-value=3.1e-15  Score=108.88  Aligned_cols=111  Identities=13%  Similarity=0.138  Sum_probs=77.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCCCC------------------ccccceeEEEEEEEecCCcEEEEEEEeCCChhhh
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQFDPTS------------------KVTVGASFLSQTIALQDSTTVKFEIWDTAGQERY   96 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~   96 (200)
                      +|+|+|+.++|||||+.+|+...-....                  ............+...+   .++.++||||+.+|
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~---~~~n~iDtPGh~dF   80 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRG---HRVFLLDAPGYGDF   80 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETT---EEEEEEECCCSGGG
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccc---cceeEEccCchhhh
Confidence            6999999999999999999642110000                  01111122222233322   57999999999999


Q ss_pred             hhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCC
Q 028986           97 AALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLH  152 (200)
Q Consensus        97 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~  152 (200)
                      .......+..+|++++|+|+...-.......| ..+.+.   ++|.++++||+|..
T Consensus        81 ~~e~~~al~~~D~avlvvda~~Gv~~~t~~~~-~~~~~~---~~p~~i~iNk~D~~  132 (267)
T d2dy1a2          81 VGEIRGALEAADAALVAVSAEAGVQVGTERAW-TVAERL---GLPRMVVVTKLDKG  132 (267)
T ss_dssp             HHHHHHHHHHCSEEEEEEETTTCSCHHHHHHH-HHHHHT---TCCEEEEEECGGGC
T ss_pred             hhhhhhhhcccCceEEEeeccCCccchhHHHH-Hhhhhc---cccccccccccccc
Confidence            99889999999999999999987544444433 344433   78899999999974

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.63  E-value=3.6e-16  Score=111.73  Aligned_cols=150  Identities=17%  Similarity=0.162  Sum_probs=91.5

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHcCC--C-----------------------------CCCCccccceeEEEEEEEecCC
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVRGQ--F-----------------------------DPTSKVTVGASFLSQTIALQDS   80 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~~~~~   80 (200)
                      +.++|+|+|+-++|||||+.+|+...  .                             ................+..   
T Consensus         2 p~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~---   78 (224)
T d1jnya3           2 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFET---   78 (224)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEEC---
T ss_pred             CccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEec---
Confidence            46899999999999999999986310  0                             0000011111111111222   


Q ss_pred             cEEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHHhH------HHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCC
Q 028986           81 TTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSF------NKAQYWVKELQKHGSPDIVMALVGNKADLHEK  154 (200)
Q Consensus        81 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~------~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~  154 (200)
                      ....+.++|+||+..|.......+..+|++|+|+|+.....-      ......+......  ...++++++||+|+...
T Consensus        79 ~~~~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~--~~~~iIv~iNK~D~~~~  156 (224)
T d1jnya3          79 KKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTM--GLDQLIVAVNKMDLTEP  156 (224)
T ss_dssp             SSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHT--TCTTCEEEEECGGGSSS
T ss_pred             CCceeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHHh--CCCceEEEEEcccCCCc
Confidence            225799999999999999999999999999999999986311      1222222222222  12357888999998643


Q ss_pred             CcC--CH----HHHHHHHHHc-----CCeEEEecCCCCCCHHH
Q 028986          155 REV--PA----QDGIEYAEKN-----GMFFIETSAKTADNINQ  186 (200)
Q Consensus       155 ~~~--~~----~~~~~~~~~~-----~~~~~~~S~~~~~~i~~  186 (200)
                      ...  ..    .++..+...+     .++++++||..|.|+.+
T Consensus       157 ~~~~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~  199 (224)
T d1jnya3         157 PYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH  199 (224)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred             cccHHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCccc
Confidence            211  11    2222333333     34689999999988753

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=4.3e-15  Score=114.54  Aligned_cols=159  Identities=14%  Similarity=0.142  Sum_probs=92.2

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccc---cceeEEEEEEEecCCcEEEEEEEeCCChhhhhh-----cccc
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVT---VGASFLSQTIALQDSTTVKFEIWDTAGQERYAA-----LAPL  102 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-----~~~~  102 (200)
                      ..+++|+|+|.+|+|||||+|+|.+..........   .+.+.........+..  .+.+|||||......     ....
T Consensus        54 ~~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~~~~~--~~~l~DtPG~~~~~~~~~~~~~~~  131 (400)
T d1tq4a_          54 SSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIP--NVVFWDLPGIGSTNFPPDTYLEKM  131 (400)
T ss_dssp             HCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCT--TEEEEECCCGGGSSCCHHHHHHHT
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeeccCCC--eEEEEeCCCcccccccHHHHHHHh
Confidence            35689999999999999999999985432221111   1111111222233332  478999999543211     1223


Q ss_pred             cccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCC-------CCcCCHH----HHHHHH----H
Q 028986          103 YYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE-------KREVPAQ----DGIEYA----E  167 (200)
Q Consensus       103 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~-------~~~~~~~----~~~~~~----~  167 (200)
                      .+..+|++|++.|..-..   .-..++..+...   +.|+++|.||+|...       ......+    ++++.+    .
T Consensus       132 ~~~~~d~~l~~~~~~~~~---~d~~l~~~l~~~---~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~l~  205 (400)
T d1tq4a_         132 KFYEYDFFIIISATRFKK---NDIDIAKAISMM---KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFR  205 (400)
T ss_dssp             TGGGCSEEEEEESSCCCH---HHHHHHHHHHHT---TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             hhhcceEEEEecCCCCCH---HHHHHHHHHHHc---CCCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHHHHHHH
Confidence            356689888887754322   122344444443   689999999999631       1111111    111111    2


Q ss_pred             HcCC---eEEEecCCC--CCCHHHHHHHHHHhhcc
Q 028986          168 KNGM---FFIETSAKT--ADNINQLFEVLITCTSS  197 (200)
Q Consensus       168 ~~~~---~~~~~S~~~--~~~i~~~~~~i~~~~~~  197 (200)
                      ..++   +++.+|..+  ..++.++.+.+.+.+.+
T Consensus       206 ~~~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~~  240 (400)
T d1tq4a_         206 ENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPI  240 (400)
T ss_dssp             HTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred             HcCCCCCCEEEecCCcccccCHHHHHHHHHHHhHH
Confidence            2233   578888765  45899999999888765

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.60  E-value=7.2e-15  Score=106.96  Aligned_cols=126  Identities=15%  Similarity=0.112  Sum_probs=73.9

Q ss_pred             CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccce-eEEEEEEEecCCcEEEEEEEeCCChhh-------hhhccc
Q 028986           30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGA-SFLSQTIALQDSTTVKFEIWDTAGQER-------YAALAP  101 (200)
Q Consensus        30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~-------~~~~~~  101 (200)
                      ....++|+++|.+|+|||||+|.|++............+ ......... ++  ..+.++||||..+       ......
T Consensus        29 ~~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~-~g--~~i~viDTPGl~~~~~~~~~~~~~i~  105 (257)
T d1h65a_          29 DVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSR-AG--FTLNIIDTPGLIEGGYINDMALNIIK  105 (257)
T ss_dssp             TCCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEE-TT--EEEEEEECCCSEETTEECHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEe-cc--EEEEEEeeecccCCcchHHHHHHHHH
Confidence            456899999999999999999999997654433221111 121222222 22  5799999999321       111111


Q ss_pred             --ccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCC--CCCeEEEEEeCCCCCCCCcCC
Q 028986          102 --LYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGS--PDIVMALVGNKADLHEKREVP  158 (200)
Q Consensus       102 --~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~iiv~nK~D~~~~~~~~  158 (200)
                        ......|+++||++++...--......+..+.....  .-.++++|+||+|........
T Consensus       106 ~~~~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~~~~~~  166 (257)
T d1h65a_         106 SFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLP  166 (257)
T ss_dssp             HHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCC
T ss_pred             HHHhcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchhhhhCEEEEEECcccCCcCCCc
Confidence              122457899999988753211111222333332212  124689999999987654443

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.45  E-value=6.9e-14  Score=104.91  Aligned_cols=116  Identities=16%  Similarity=0.172  Sum_probs=77.9

Q ss_pred             ee-eEEEEcCCCCcHHHHHHHHHcC--CC--------------CCCCccccceeEEEEEEEe-------------cCCcE
Q 028986           33 RV-KLVLLGDSGVGKSCIVLRFVRG--QF--------------DPTSKVTVGASFLSQTIAL-------------QDSTT   82 (200)
Q Consensus        33 ~~-~i~i~G~~~sGKSsli~~l~~~--~~--------------~~~~~~~~~~~~~~~~~~~-------------~~~~~   82 (200)
                      .+ +|+|+|+.++|||||+.+|+..  ..              ................+..             .++..
T Consensus        16 ~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~~   95 (341)
T d1n0ua2          16 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS   95 (341)
T ss_dssp             GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred             cCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhccccccc
Confidence            45 5999999999999999999731  00              0000011111111111111             13355


Q ss_pred             EEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCC
Q 028986           83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLH  152 (200)
Q Consensus        83 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~  152 (200)
                      +.+.++||||+.++.......++-+|++++|+|+..+-......-|....    ..++|+++++||+|..
T Consensus        96 ~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~~~~a~----~~~~p~i~viNKiDr~  161 (341)
T d1n0ua2          96 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL----GERIKPVVVINKVDRA  161 (341)
T ss_dssp             EEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH----HTTCEEEEEEECHHHH
T ss_pred             eEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHHHHHHHH----HcCCCeEEEEECcccc
Confidence            78999999999999988888899999999999999875444444333322    3378999999999973

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.44  E-value=2.8e-14  Score=102.76  Aligned_cols=110  Identities=16%  Similarity=0.074  Sum_probs=65.7

Q ss_pred             EEEEEeCCChhhhhhccccc-----ccCccEEEEEEeCCC---HHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCC
Q 028986           84 KFEIWDTAGQERYAALAPLY-----YRGAAVAVVVYDITS---PDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKR  155 (200)
Q Consensus        84 ~~~l~D~~g~~~~~~~~~~~-----~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~  155 (200)
                      .+.++|+||+.+........     ....+.+++++|+..   +.......  +...........|.++|+||+|+....
T Consensus        96 ~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~--l~~~~~~~~~~~~~ivvinK~D~~~~~  173 (244)
T d1yrba1          96 DYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVR--FFALLIDLRLGATTIPALNKVDLLSEE  173 (244)
T ss_dssp             SEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHH--HHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred             ceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHH--HHHHHHHHHhCCCceeeeeccccccHH
Confidence            58899999986654322221     123568899999763   33322221  111111112367899999999987532


Q ss_pred             cCCH--------------------------HHHHHHHHH--cCCeEEEecCCCCCCHHHHHHHHHHhh
Q 028986          156 EVPA--------------------------QDGIEYAEK--NGMFFIETSAKTADNINQLFEVLITCT  195 (200)
Q Consensus       156 ~~~~--------------------------~~~~~~~~~--~~~~~~~~S~~~~~~i~~~~~~i~~~~  195 (200)
                      +...                          .........  ..++++++||++|+|+++++.+|.+.+
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~~  241 (244)
T d1yrba1         174 EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHY  241 (244)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            2100                          000001111  356899999999999999999998864

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.33  E-value=1.8e-12  Score=96.79  Aligned_cols=103  Identities=13%  Similarity=0.070  Sum_probs=61.6

Q ss_pred             EEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHH
Q 028986           83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDG  162 (200)
Q Consensus        83 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~  162 (200)
                      +.+.+++|.|.......   ...-+|.+++|..+...+..+..+.-   +.+     .+=++|+||+|+...........
T Consensus       144 ~d~iiiETVG~gq~e~~---~~~~~D~~v~v~~p~~GD~iQ~~k~g---ilE-----~aDi~vvNKaD~~~~~~~~~~~~  212 (323)
T d2qm8a1         144 FDVILVETVGVGQSETA---VADLTDFFLVLMLPGAGDELQGIKKG---IFE-----LADMIAVNKADDGDGERRASAAA  212 (323)
T ss_dssp             CCEEEEEECSSSSCHHH---HHTTSSEEEEEECSCC------CCTT---HHH-----HCSEEEEECCSTTCCHHHHHHHH
T ss_pred             CCeEEEeehhhhhhhhh---hhcccceEEEEeeccchhhhhhhhhh---Hhh-----hhheeeEeccccccchHHHHHHH
Confidence            36777888774322211   23348999999999887544433221   111     22478999999866543222222


Q ss_pred             HHHHHH----------cCCeEEEecCCCCCCHHHHHHHHHHhhc
Q 028986          163 IEYAEK----------NGMFFIETSAKTADNINQLFEVLITCTS  196 (200)
Q Consensus       163 ~~~~~~----------~~~~~~~~S~~~~~~i~~~~~~i~~~~~  196 (200)
                      ..+...          +..+++.+|+.++.|+++++++|.+...
T Consensus       213 ~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~  256 (323)
T d2qm8a1         213 SEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  256 (323)
T ss_dssp             HHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHHH
Confidence            222221          3457999999999999999999977643

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=99.30  E-value=6e-13  Score=99.46  Aligned_cols=101  Identities=15%  Similarity=0.068  Sum_probs=56.0

Q ss_pred             EEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCC--HHH
Q 028986           84 KFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVP--AQD  161 (200)
Q Consensus        84 ~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~  161 (200)
                      .+.+++|.|.....   ..+...+|.+++|.++...+..+..+..+..+        +=++|+||+|+.......  ..+
T Consensus       148 d~iliEtvG~gq~e---~~i~~~aD~~l~v~~P~~Gd~iq~~k~gi~e~--------aDi~VvNKaD~~~~~~~~~~~~~  216 (327)
T d2p67a1         148 DVVIVETVGVGQSE---TEVARMVDCFISLQIAGGGDDLQGIKKGLMEV--------ADLIVINKDDGDNHTNVAIARHM  216 (327)
T ss_dssp             SEEEEEEECCTTHH---HHHHTTCSEEEEEECC------CCCCHHHHHH--------CSEEEECCCCTTCHHHHHHHHHH
T ss_pred             CeEEEeeccccccc---hhhhhccceEEEEecCCCchhhhhhchhhhcc--------ccEEEEEeecccchHHHHHHHHH
Confidence            35555555532111   12345589999999887665554433322222        236888999986532211  111


Q ss_pred             HHHHHH-------HcCCeEEEecCCCCCCHHHHHHHHHHhh
Q 028986          162 GIEYAE-------KNGMFFIETSAKTADNINQLFEVLITCT  195 (200)
Q Consensus       162 ~~~~~~-------~~~~~~~~~S~~~~~~i~~~~~~i~~~~  195 (200)
                      ......       .+..+++.|||.+|.|++++++.|.+..
T Consensus       217 ~~~al~~~~~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~~  257 (327)
T d2p67a1         217 YESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFK  257 (327)
T ss_dssp             HHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred             HHHHhhhcccCCCCCcceeEEEEeeCCCCHHHHHHHHHHHH
Confidence            111111       1345799999999999999999987654

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.26  E-value=4.9e-11  Score=87.37  Aligned_cols=85  Identities=16%  Similarity=0.173  Sum_probs=51.6

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCC------------c--EEEEEEEeCCCh----h
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDS------------T--TVKFEIWDTAGQ----E   94 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~--~~~~~l~D~~g~----~   94 (200)
                      .++|.++|.|+||||||+++|++........+..+.+...-.+.+++.            +  +..++++|+||.    .
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~   81 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS   81 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCcc
Confidence            479999999999999999999986543222222221111112222221            1  136889999993    2


Q ss_pred             hhhhccccc---ccCccEEEEEEeCC
Q 028986           95 RYAALAPLY---YRGAAVAVVVYDIT  117 (200)
Q Consensus        95 ~~~~~~~~~---~~~~d~~i~v~d~~  117 (200)
                      +-..+...|   ++++|+++.|+|+.
T Consensus        82 ~g~Glg~~FL~~ir~~d~LihVVr~f  107 (278)
T d1jala1          82 KGEGLGNKFLANIRETDAIGHVVRCF  107 (278)
T ss_dssp             HHGGGTCCHHHHHHTCSEEEEEEECS
T ss_pred             cCCCccHHHHHHHHhccceEEEeecc
Confidence            333444444   56799999999874

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.23  E-value=5.7e-11  Score=87.89  Aligned_cols=121  Identities=17%  Similarity=0.215  Sum_probs=71.0

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHcCCCCCCCc-cccceeEEEEEEE-----------------------------------
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSK-VTVGASFLSQTIA-----------------------------------   76 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~-----------------------------------   76 (200)
                      ..+|+|+|..++|||||+|+|++..+.+... ++...........                                   
T Consensus        26 ~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (299)
T d2akab1          26 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG  105 (299)
T ss_dssp             CCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCS
T ss_pred             CCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhhC
Confidence            4479999999999999999999987643322 2221111111000                                   


Q ss_pred             -------------ecCCcEEEEEEEeCCChh-------------hhhhcccccccCcc-EEEEEEeCCCHHhHHHHHHHH
Q 028986           77 -------------LQDSTTVKFEIWDTAGQE-------------RYAALAPLYYRGAA-VAVVVYDITSPDSFNKAQYWV  129 (200)
Q Consensus        77 -------------~~~~~~~~~~l~D~~g~~-------------~~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~~  129 (200)
                                   +.......+.++|+||..             ........|+...+ ++++|.++....+......+.
T Consensus       106 ~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~~  185 (299)
T d2akab1         106 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIA  185 (299)
T ss_dssp             STTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHH
T ss_pred             CCcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHHH
Confidence                         000001147899999932             12234455566666 556677776554444444444


Q ss_pred             HHHHHcCCCCCeEEEEEeCCCCCCCCc
Q 028986          130 KELQKHGSPDIVMALVGNKADLHEKRE  156 (200)
Q Consensus       130 ~~i~~~~~~~~p~iiv~nK~D~~~~~~  156 (200)
                      ..+.   ....++++|+||+|.....+
T Consensus       186 ~~~~---~~~~r~i~Vltk~D~~~~~~  209 (299)
T d2akab1         186 KEVD---PQGQRTIGVITKLDLMDEGT  209 (299)
T ss_dssp             HHHC---TTCSSEEEEEECGGGSCTTC
T ss_pred             HHhC---cCCCceeeEEeccccccchh
Confidence            4443   34567999999999865533

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.16  E-value=1.5e-10  Score=85.46  Aligned_cols=86  Identities=16%  Similarity=0.147  Sum_probs=53.3

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHcCCCC--CCCccccceeEEEEEEEecCC--------------cEEEEEEEeCCChhh
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVRGQFD--PTSKVTVGASFLSQTIALQDS--------------TTVKFEIWDTAGQER   95 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~l~D~~g~~~   95 (200)
                      ..++|.|+|.|+||||||+|+|++....  .+++. .+.+.....+.+++.              ....+++.|.||.-.
T Consensus         9 ~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypf-tTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~   87 (296)
T d1ni3a1           9 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPY-ATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK   87 (296)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSS-CCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCc-cCccCCeEEEeccccchhhhhhcccCCceecccceeeecccccc
Confidence            4478999999999999999999986432  22322 221111122333221              125789999998421


Q ss_pred             h----hhc---ccccccCccEEEEEEeCCC
Q 028986           96 Y----AAL---APLYYRGAAVAVVVYDITS  118 (200)
Q Consensus        96 ~----~~~---~~~~~~~~d~~i~v~d~~~  118 (200)
                      -    ..+   .-.-++++|+++.|+|+.+
T Consensus        88 gA~~g~GLGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          88 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             ccccccccHHHHHHHhhccceeEEEEeccC
Confidence            1    111   1223578999999999865

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.12  E-value=1.6e-10  Score=85.79  Aligned_cols=68  Identities=18%  Similarity=0.156  Sum_probs=41.2

Q ss_pred             EEEEEeCCChhh-------------hhhcccccccCccEEEEEE-eCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCC
Q 028986           84 KFEIWDTAGQER-------------YAALAPLYYRGAAVAVVVY-DITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKA  149 (200)
Q Consensus        84 ~~~l~D~~g~~~-------------~~~~~~~~~~~~d~~i~v~-d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~  149 (200)
                      .+.++|+||...             ....+..|+.+++.+++++ +......-.....+...+   ......+++|+||+
T Consensus       132 ~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~---~~~~~r~i~Vitk~  208 (306)
T d1jwyb_         132 NLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEV---DPEGKRTIGVITKL  208 (306)
T ss_dssp             SEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHH---CSSCSSEEEEEECT
T ss_pred             CceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeecccccccccHHHHHHHHh---CcCCCeEEEEEecc
Confidence            578999999321             2345566788888766655 444332222223333333   33456799999999


Q ss_pred             CCCCC
Q 028986          150 DLHEK  154 (200)
Q Consensus       150 D~~~~  154 (200)
                      |....
T Consensus       209 D~~~~  213 (306)
T d1jwyb_         209 DLMDK  213 (306)
T ss_dssp             TSSCS
T ss_pred             ccccc
Confidence            98644

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.02  E-value=5.1e-10  Score=83.46  Aligned_cols=84  Identities=18%  Similarity=0.160  Sum_probs=45.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcCCCCCCCcc------ccceeEEEEEEEe---------------cCCcEEEEEEEeCCC
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKV------TVGASFLSQTIAL---------------QDSTTVKFEIWDTAG   92 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~------~~~~~~~~~~~~~---------------~~~~~~~~~l~D~~g   92 (200)
                      ++|+++|.|+||||||+|+|++........|      ..+..........               ......+++++|+||
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG   80 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence            5799999999999999999998653221111      1122111111100               011235799999999


Q ss_pred             hhh-------hhhcccccccCccEEEEEEeCC
Q 028986           93 QER-------YAALAPLYYRGAAVAVVVYDIT  117 (200)
Q Consensus        93 ~~~-------~~~~~~~~~~~~d~~i~v~d~~  117 (200)
                      .-.       .....-..++.+|+++.|+|+.
T Consensus        81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~  112 (319)
T d1wxqa1          81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDAT  112 (319)
T ss_dssp             --------------CCCSSTTCSEEEEEEETT
T ss_pred             cccchhcccchHHHHHHhhccceEEEEEeccc
Confidence            421       1122223457899999999986

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.71  E-value=7.8e-09  Score=75.21  Aligned_cols=59  Identities=24%  Similarity=0.383  Sum_probs=37.1

Q ss_pred             CCceeeEEEEcCCCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCCh
Q 028986           30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ   93 (200)
Q Consensus        30 ~~~~~~i~i~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~   93 (200)
                      ....++|+|+|.|+||||||+|+|.+....... ...+.+.....+....    .+.++||||.
T Consensus       109 ~~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~-~~pG~Tr~~~~i~~~~----~~~l~DTPGi  167 (273)
T d1puja_         109 KPRAIRALIIGIPNVGKSTLINRLAKKNIAKTG-DRPGITTSQQWVKVGK----ELELLDTPGI  167 (273)
T ss_dssp             CCCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEEETT----TEEEEECCCC
T ss_pred             CCCceEEEEEecCccchhhhhhhhhccceEEEC-CcccccccceEEECCC----CeEEecCCCc
Confidence            456789999999999999999999997654332 2344443333333322    4899999993

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.59  E-value=1.6e-07  Score=63.34  Aligned_cols=23  Identities=35%  Similarity=0.772  Sum_probs=21.3

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcC
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      +||+|+|++|+|||||++.+.+.
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~~   23 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHhc
Confidence            58999999999999999999874

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.47  E-value=2.3e-07  Score=64.86  Aligned_cols=87  Identities=23%  Similarity=0.214  Sum_probs=62.4

Q ss_pred             cccccCccEEEEEEeCCCHH-hHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHH--cCCeEEEec
Q 028986          101 PLYYRGAAVAVVVYDITSPD-SFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEK--NGMFFIETS  177 (200)
Q Consensus       101 ~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~S  177 (200)
                      .....+.|.+++|+.+.+|+ +...+.+|+-.....   +++.+||+||+|+....+  .+....+...  ...+++.+|
T Consensus         5 RP~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~~---~i~pvIvlnK~DL~~~~~--~~~~~~~~~~~~~~~~v~~vS   79 (225)
T d1u0la2           5 KPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKN---ELETVMVINKMDLYDEDD--LRKVRELEEIYSGLYPIVKTS   79 (225)
T ss_dssp             TTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHT---TCEEEEEECCGGGCCHHH--HHHHHHHHHHHTTTSCEEECC
T ss_pred             CCCcccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHc---CCCEEEEEeCcccCCHHH--HHHHHHhhcccccceeEEEec
Confidence            34567899999999988764 456667776665544   788999999999965332  2222333332  346899999


Q ss_pred             CCCCCCHHHHHHHHH
Q 028986          178 AKTADNINQLFEVLI  192 (200)
Q Consensus       178 ~~~~~~i~~~~~~i~  192 (200)
                      ++++.+++++.+++.
T Consensus        80 a~~~~g~~~L~~~l~   94 (225)
T d1u0la2          80 AKTGMGIEELKEYLK   94 (225)
T ss_dssp             TTTCTTHHHHHHHHS
T ss_pred             cccchhHhhHHHHhc
Confidence            999999999988764

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=98.39  E-value=3.2e-08  Score=68.62  Aligned_cols=85  Identities=13%  Similarity=0.025  Sum_probs=51.4

Q ss_pred             EEEEEEeCCChhhhh----hccccc--------ccCccEEEEEEeCCCH-HhHHHHHHHHHHHHHcCCCCCeEEEEEeCC
Q 028986           83 VKFEIWDTAGQERYA----ALAPLY--------YRGAAVAVVVYDITSP-DSFNKAQYWVKELQKHGSPDIVMALVGNKA  149 (200)
Q Consensus        83 ~~~~l~D~~g~~~~~----~~~~~~--------~~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~  149 (200)
                      ..+.++||+|...+.    ..+..+        ....+-.++|+|+... +....+..++..+.-       --+|+||.
T Consensus        89 ~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~~~-------~~lI~TKl  161 (207)
T d1okkd2          89 YDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAVGL-------TGVIVTKL  161 (207)
T ss_dssp             CSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHHCC-------SEEEEECT
T ss_pred             CCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHHHHhhhccCC-------ceEEEecc
Confidence            468999999942211    111111        1245778999998854 455666655555421       13678999


Q ss_pred             CCCCCCcCCHHHHHHHHHHcCCeEEEecC
Q 028986          150 DLHEKREVPAQDGIEYAEKNGMFFIETSA  178 (200)
Q Consensus       150 D~~~~~~~~~~~~~~~~~~~~~~~~~~S~  178 (200)
                      |....    .-.+...+...+.|+..++.
T Consensus       162 Det~~----~G~~l~~~~~~~~Pi~~i~~  186 (207)
T d1okkd2         162 DGTAK----GGVLIPIVRTLKVPIKFVGV  186 (207)
T ss_dssp             TSSCC----CTTHHHHHHHHCCCEEEEEC
T ss_pred             CCCCC----ccHHHHHHHHHCCCEEEEeC
Confidence            96432    22356667778888877774

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=98.36  E-value=6.4e-08  Score=67.15  Aligned_cols=90  Identities=14%  Similarity=0.149  Sum_probs=52.9

Q ss_pred             EEEEEEeCCChhhhh----hcc---ccccc-----CccEEEEEEeCCCH-HhHHHHHHHHHHHHHcCCCCCeEEEEEeCC
Q 028986           83 VKFEIWDTAGQERYA----ALA---PLYYR-----GAAVAVVVYDITSP-DSFNKAQYWVKELQKHGSPDIVMALVGNKA  149 (200)
Q Consensus        83 ~~~~l~D~~g~~~~~----~~~---~~~~~-----~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~  149 (200)
                      +.+.++||+|.....    ...   ....+     ..+-.++|+|+... +....+..++..+.       +--+|+||.
T Consensus        92 ~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~~-------~~~lIlTKl  164 (211)
T d2qy9a2          92 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAVG-------LTGITLTKL  164 (211)
T ss_dssp             CSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHHHHHHHHHHHHSC-------CCEEEEECC
T ss_pred             CCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCcchHHHHhhhhhccC-------CceEEEeec
Confidence            368999999932111    111   11121     24688999998864 44455554444331       124678999


Q ss_pred             CCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHH
Q 028986          150 DLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNIN  185 (200)
Q Consensus       150 D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~  185 (200)
                      |....    .-.+...+...++|+..++  .|++++
T Consensus       165 De~~~----~G~~l~~~~~~~~Pi~~i~--~Gq~v~  194 (211)
T d2qy9a2         165 DGTAK----GGVIFSVADQFGIPIRYIG--VGERIE  194 (211)
T ss_dssp             TTCTT----TTHHHHHHHHHCCCEEEEE--CSSSGG
T ss_pred             CCCCC----ccHHHHHHHHHCCCEEEEe--CCCCcc
Confidence            96332    3356667778899988887  454443

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.35  E-value=2.9e-07  Score=63.93  Aligned_cols=90  Identities=17%  Similarity=0.148  Sum_probs=52.2

Q ss_pred             EEEEEEeCCChhhhh----hcccc---cc-----cCccEEEEEEeCCCH-HhHHHHHHHHHHHHHcCCCCCeEEEEEeCC
Q 028986           83 VKFEIWDTAGQERYA----ALAPL---YY-----RGAAVAVVVYDITSP-DSFNKAQYWVKELQKHGSPDIVMALVGNKA  149 (200)
Q Consensus        83 ~~~~l~D~~g~~~~~----~~~~~---~~-----~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~  149 (200)
                      +.+.++||+|...+.    .....   ..     ...+-.++|+|+... +.+..+..++..+.       +--+|+||.
T Consensus        94 ~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~~-------~~~lI~TKl  166 (213)
T d1vmaa2          94 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQAKIFKEAVN-------VTGIILTKL  166 (213)
T ss_dssp             CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHHHHHHHHHHHHHSC-------CCEEEEECG
T ss_pred             CCEEEEeccccccchHHHHHHHHHHHhhhhhccccccceeEEeeccccCcchhhhhhhhccccC-------CceEEEecc
Confidence            468999999932111    11111   11     124678999998865 44444444443331       124678999


Q ss_pred             CCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHH
Q 028986          150 DLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNIN  185 (200)
Q Consensus       150 D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~  185 (200)
                      |....    .-.+...+...+.|+..++.  |++++
T Consensus       167 De~~~----~G~~l~~~~~~~~Pi~~i~~--Gq~v~  196 (213)
T d1vmaa2         167 DGTAK----GGITLAIARELGIPIKFIGV--GEKAE  196 (213)
T ss_dssp             GGCSC----TTHHHHHHHHHCCCEEEEEC--SSSGG
T ss_pred             cCCCc----ccHHHHHHHHHCCCEEEEeC--CCCcc
Confidence            95322    33566777788999888773  54444

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.34  E-value=1.6e-07  Score=65.69  Aligned_cols=23  Identities=35%  Similarity=0.410  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQ   57 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~   57 (200)
                      ..+++|++|||||||+|+|.+..
T Consensus        97 t~~~~G~SGVGKSTLiN~L~~~~  119 (225)
T d1u0la2          97 ISTMAGLSGVGKSSLLNAINPGL  119 (225)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTC
T ss_pred             eEEEECCCCCCHHHHHHhhcchh
Confidence            57899999999999999998754

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.27  E-value=3.8e-06  Score=58.76  Aligned_cols=61  Identities=10%  Similarity=0.004  Sum_probs=35.8

Q ss_pred             ccEEEEEEeCCCHHhH-HHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHc--CCeEEEec
Q 028986          107 AAVAVVVYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKN--GMFFIETS  177 (200)
Q Consensus       107 ~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~S  177 (200)
                      .+.++.++|+...... .....+..++...      =++|+||+|+....    +..++..+.+  .+++++++
T Consensus       122 l~~vi~vVDa~~~~~~~~~~~~~~~Qi~~A------D~ivlNK~Dl~~~~----~~~~~~l~~lNP~a~Ii~~~  185 (222)
T d1nija1         122 LDGVIALVDAVHADEQMNQFTIAQSQVGYA------DRILLTKTDVAGEA----EKLHERLARINARAPVYTVT  185 (222)
T ss_dssp             EEEEEEEEETTTHHHHHHHCHHHHHHHHTC------SEEEEECTTTCSCT----HHHHHHHHHHCSSSCEEECC
T ss_pred             ccchhhhhhhhhhhhhhhhhHHHHHHHHhC------CcccccccccccHH----HHHHHHHHHHhCCCeEEEee
Confidence            5788999999876432 2212233334322      25789999987532    3445555554  45677655

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.22  E-value=5.8e-07  Score=65.07  Aligned_cols=88  Identities=15%  Similarity=0.103  Sum_probs=60.9

Q ss_pred             cccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCC
Q 028986          101 PLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKT  180 (200)
Q Consensus       101 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~  180 (200)
                      ...++.+|++|+|+|+..+.+...  .++..+.    .+.|.++|+||+|+.....  .+...++....+...+.+|+..
T Consensus        10 ~~~i~~~DvIl~V~DaR~P~ss~~--~~l~~~~----~~Kp~IlVlNK~DLv~~~~--~~~w~~~f~~~~~~~i~isa~~   81 (273)
T d1puja_          10 TEKLKLIDIVYELVDARIPMSSRN--PMIEDIL----KNKPRIMLLNKADKADAAV--TQQWKEHFENQGIRSLSINSVN   81 (273)
T ss_dssp             HHHGGGCSEEEEEEETTSTTTTSC--HHHHHHC----SSSCEEEEEECGGGSCHHH--HHHHHHHHHTTTCCEEECCTTT
T ss_pred             HHHHHhCCEEEEEEECCCCCCCCC--HHHHHHH----cCCCeEEEEECccCCchHH--HHHHHHHHHhcCCccceeeccc
Confidence            446788999999999998754421  1122221    2578999999999875432  2233344455577899999999


Q ss_pred             CCCHHHHHHHHHHhhc
Q 028986          181 ADNINQLFEVLITCTS  196 (200)
Q Consensus       181 ~~~i~~~~~~i~~~~~  196 (200)
                      +.+..++...+.+.+.
T Consensus        82 ~~~~~~~~~~~~~~l~   97 (273)
T d1puja_          82 GQGLNQIVPASKEILQ   97 (273)
T ss_dssp             CTTGGGHHHHHHHHHH
T ss_pred             CCCccccchhhhhhhh
Confidence            9998887777766554

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.21  E-value=2.4e-07  Score=64.96  Aligned_cols=88  Identities=20%  Similarity=0.179  Sum_probs=62.8

Q ss_pred             cccccCccEEEEEEeCCCHH-hHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCC--HHHHHHHHHHcCCeEEEec
Q 028986          101 PLYYRGAAVAVVVYDITSPD-SFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVP--AQDGIEYAEKNGMFFIETS  177 (200)
Q Consensus       101 ~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~S  177 (200)
                      .....+.|.+++|+++.+|. +...+.+++-...   ..+++.+||+||+|+....+..  .+...+.....+.+++.+|
T Consensus         5 RP~vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~---~~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~S   81 (231)
T d1t9ha2           5 RPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVE---ANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTS   81 (231)
T ss_dssp             TTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHH---TTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECC
T ss_pred             CCCccccCEEEEEEECCCCCCCHHHHHHHHHHHH---HcCCCEEEEEecccccccHHHHHHHHHHHHHHhhccccceeee
Confidence            34567899999999988763 4566666665554   4478899999999997653311  1122234455689999999


Q ss_pred             CCCCCCHHHHHHHH
Q 028986          178 AKTADNINQLFEVL  191 (200)
Q Consensus       178 ~~~~~~i~~~~~~i  191 (200)
                      ++++.|++++.++|
T Consensus        82 a~~~~gl~~L~~~l   95 (231)
T d1t9ha2          82 SKDQDSLADIIPHF   95 (231)
T ss_dssp             HHHHTTCTTTGGGG
T ss_pred             cCChhHHHHHHHhh
Confidence            99999998877655

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=98.19  E-value=2.3e-07  Score=64.40  Aligned_cols=91  Identities=15%  Similarity=0.166  Sum_probs=53.5

Q ss_pred             EEEEEEeCCChhhhh------hccccc--ccCccEEEEEEeCCCH-HhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCC
Q 028986           83 VKFEIWDTAGQERYA------ALAPLY--YRGAAVAVVVYDITSP-DSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE  153 (200)
Q Consensus        83 ~~~~l~D~~g~~~~~------~~~~~~--~~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~  153 (200)
                      ..+.++||+|...+.      .....+  .-..+-+++|+++... +..+.+..++..+      ++ --+|+||.|...
T Consensus        95 ~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~~~~~~------~~-~~lI~TKlDet~  167 (211)
T d1j8yf2          95 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLASKFNQAS------KI-GTIIITKMDGTA  167 (211)
T ss_dssp             CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHHHC------TT-EEEEEECTTSCS
T ss_pred             CceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcchHHHHhhhhccc------Cc-ceEEEecccCCC
Confidence            468999999942211      111111  1235678899998865 3344444333322      22 236689999532


Q ss_pred             CCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHH
Q 028986          154 KREVPAQDGIEYAEKNGMFFIETSAKTADNINQ  186 (200)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~  186 (200)
                          ..-.+...+.+.++|+..++.  |+++++
T Consensus       168 ----~~G~~l~~~~~~~lPi~~it~--Gq~v~D  194 (211)
T d1j8yf2         168 ----KGGGALSAVAATGATIKFIGT--GEKIDE  194 (211)
T ss_dssp             ----CHHHHHHHHHTTTCCEEEEEC--SSSTTC
T ss_pred             ----cccHHHHHHHHHCcCEEEEeC--CCCccc
Confidence                355667778888999888874  555543

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.16  E-value=1.3e-07  Score=66.31  Aligned_cols=23  Identities=35%  Similarity=0.472  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQ   57 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~   57 (200)
                      ..+++|++|||||||+|+|.+..
T Consensus        99 ~~vl~G~SGVGKSSLiN~L~~~~  121 (231)
T d1t9ha2          99 TTVFAGQSGVGKSSLLNAISPEL  121 (231)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC--
T ss_pred             eEEEECCCCccHHHHHHhhccHh
Confidence            46799999999999999999854

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=98.10  E-value=2.9e-07  Score=63.76  Aligned_cols=85  Identities=15%  Similarity=0.144  Sum_probs=50.5

Q ss_pred             EEEEEEeCCChhhh----hhccccc--ccCccEEEEEEeCCCH-HhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCC
Q 028986           83 VKFEIWDTAGQERY----AALAPLY--YRGAAVAVVVYDITSP-DSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKR  155 (200)
Q Consensus        83 ~~~~l~D~~g~~~~----~~~~~~~--~~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~  155 (200)
                      ..+.++||+|....    ...+..+  ..+.+-+++|.|+... +..+.+..+++.+.      + --+|+||.|...  
T Consensus        93 ~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~~~~~f~~~~~------~-~~~I~TKlDe~~--  163 (207)
T d1ls1a2          93 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVG------V-TGLVLTKLDGDA--  163 (207)
T ss_dssp             CCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHHHHHHTC------C-CEEEEECGGGCS--
T ss_pred             CcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHHHHHHHHHhhCC------C-CeeEEeecCccc--
Confidence            46899999993211    1111111  2346788999998865 34444444433331      1 236789999532  


Q ss_pred             cCCHHHHHHHHHHcCCeEEEecC
Q 028986          156 EVPAQDGIEYAEKNGMFFIETSA  178 (200)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~S~  178 (200)
                        ..-.+...+...+.|+..++.
T Consensus       164 --~~G~~l~~~~~~~~Pi~~i~~  184 (207)
T d1ls1a2         164 --RGGAALSARHVTGKPIYFAGV  184 (207)
T ss_dssp             --SCHHHHHHHHHHCCCEEEEC-
T ss_pred             --cchHHHHHHHHHCCCEEEEeC
Confidence              234566777788988877753

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.96  E-value=2.6e-06  Score=56.86  Aligned_cols=27  Identities=15%  Similarity=0.375  Sum_probs=23.8

Q ss_pred             CCceeeEEEEcCCCCcHHHHHHHHHcC
Q 028986           30 KNLRVKLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        30 ~~~~~~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      +++.++|+|.|++||||||+.+.|...
T Consensus         2 ~pk~~~I~i~G~~GsGKTT~~~~La~~   28 (174)
T d1y63a_           2 QPKGINILITGTPGTGKTSMAEMIAAE   28 (174)
T ss_dssp             CCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence            456789999999999999999999763

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=3.4e-05  Score=51.48  Aligned_cols=22  Identities=27%  Similarity=0.498  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      +|+|.|++|+|||||+..+...
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~~   24 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            5899999999999999999763

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.84  E-value=3.9e-06  Score=56.47  Aligned_cols=23  Identities=26%  Similarity=0.429  Sum_probs=20.9

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcC
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      -+|+|.|++|||||||+++|...
T Consensus         8 K~I~i~G~~GsGKTTla~~La~~   30 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAAV   30 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            37999999999999999999874

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.81  E-value=5.1e-06  Score=55.24  Aligned_cols=23  Identities=26%  Similarity=0.459  Sum_probs=20.7

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHc
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~   55 (200)
                      -.+|+|+|++||||||+++.|..
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~   26 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            35899999999999999999965

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.72  E-value=8.5e-06  Score=53.96  Aligned_cols=21  Identities=24%  Similarity=0.431  Sum_probs=19.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHc
Q 028986           35 KLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~   55 (200)
                      -|+|+|++|||||||+++|..
T Consensus         4 vi~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            488999999999999999986

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.69  E-value=1.1e-05  Score=54.24  Aligned_cols=22  Identities=36%  Similarity=0.575  Sum_probs=20.1

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHc
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~   55 (200)
                      ++|+|+|+|||||||+++.|..
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVA   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998865

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.67  E-value=1.4e-05  Score=54.30  Aligned_cols=24  Identities=33%  Similarity=0.547  Sum_probs=21.6

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHc
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~   55 (200)
                      +.++|+++|+|||||||+++.|..
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999999975

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.65  E-value=1.1e-05  Score=54.70  Aligned_cols=25  Identities=16%  Similarity=0.151  Sum_probs=21.7

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHcC
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .+++|+|+|++||||||++..|...
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~~   26 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKTK   26 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3568999999999999999998763

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.65  E-value=1.6e-05  Score=54.09  Aligned_cols=25  Identities=28%  Similarity=0.407  Sum_probs=21.3

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHc
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~   55 (200)
                      .++..|+|+|+|||||||+++.|..
T Consensus         4 ~kp~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           4 SKPNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3445789999999999999999976

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.64  E-value=1.5e-05  Score=51.90  Aligned_cols=21  Identities=29%  Similarity=0.507  Sum_probs=18.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 028986           36 LVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        36 i~i~G~~~sGKSsli~~l~~~   56 (200)
                      |+|.|+||||||||++.|...
T Consensus         5 Iii~G~pGsGKTTla~~L~~~   25 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIAK   25 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            778999999999999999763

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.63  E-value=1.6e-05  Score=53.48  Aligned_cols=23  Identities=26%  Similarity=0.619  Sum_probs=20.9

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcC
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      ++|+|+|+|||||||+.+.|...
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~~   23 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAEK   23 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999999764

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.62  E-value=1.6e-05  Score=53.53  Aligned_cols=23  Identities=35%  Similarity=0.543  Sum_probs=20.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcC
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      ++|+|+|+|||||||+++.|...
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVEK   23 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999999864

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.60  E-value=2.3e-05  Score=53.25  Aligned_cols=26  Identities=19%  Similarity=0.428  Sum_probs=22.8

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcC
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .+-++|+|+|+|||||||+...|...
T Consensus         4 ~r~mrIiliG~PGSGKtT~a~~La~~   29 (189)
T d2ak3a1           4 ARLLRAAIMGAPGSGKGTVSSRITKH   29 (189)
T ss_dssp             SCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcceeEEEECCCCCCHHHHHHHHHHH
Confidence            34679999999999999999999873

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.57  E-value=2.2e-05  Score=52.78  Aligned_cols=24  Identities=25%  Similarity=0.520  Sum_probs=21.4

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHcC
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .++|+|+|+|||||||+++.|...
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~~   25 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQER   25 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            468999999999999999999763

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.56  E-value=2.1e-05  Score=52.80  Aligned_cols=22  Identities=23%  Similarity=0.422  Sum_probs=20.0

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHc
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~   55 (200)
                      ++|+|+|+|||||||.++.|..
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~   22 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIME   22 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999998865

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.53  E-value=2.4e-05  Score=51.73  Aligned_cols=21  Identities=33%  Similarity=0.566  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 028986           36 LVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        36 i~i~G~~~sGKSsli~~l~~~   56 (200)
                      |+|.|++||||||+++.|...
T Consensus         5 I~i~G~~GsGKTTva~~L~~~   25 (176)
T d2bdta1           5 YIITGPAGVGKSTTCKRLAAQ   25 (176)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999999863

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.50  E-value=2.9e-05  Score=50.83  Aligned_cols=22  Identities=32%  Similarity=0.528  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      +|+++|++||||||+.+.|...
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~   25 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQ   25 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5999999999999999999774

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=0.00016  Score=51.88  Aligned_cols=61  Identities=16%  Similarity=0.144  Sum_probs=38.9

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHcCCCCCC-----CccccceeEEEEEEEecCCcEEEEEEEeCCChh
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPT-----SKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE   94 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~   94 (200)
                      +..-|.|+|+.++|||+|+|.|++....-.     ...|.+.-.  ......++....+.++||.|..
T Consensus        31 ~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~--~~~~~~~~~~~~~~~lDteG~~   96 (277)
T d1f5na2          31 PMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWM--WCVPHPKKPGHILVLLDTEGLG   96 (277)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEE--EEEECSSSTTCEEEEEEECCBC
T ss_pred             CEEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEE--EEeeccCCCCceEEEEeccccc
Confidence            344677999999999999999998543111     112233222  2223334444678999999953

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.46  E-value=3.4e-05  Score=51.03  Aligned_cols=20  Identities=20%  Similarity=0.408  Sum_probs=18.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHc
Q 028986           36 LVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        36 i~i~G~~~sGKSsli~~l~~   55 (200)
                      |.|+|.+|||||||+++|..
T Consensus         4 i~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           4 WQVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            35999999999999999976

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=3.9e-05  Score=52.02  Aligned_cols=23  Identities=30%  Similarity=0.534  Sum_probs=20.6

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHc
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~   55 (200)
                      ++.|+|+|+|||||||.+..|..
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            36799999999999999998876

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.38  E-value=4.3e-05  Score=50.52  Aligned_cols=22  Identities=45%  Similarity=0.569  Sum_probs=19.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHc
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~   55 (200)
                      .+|+++|++||||||+.+.|..
T Consensus         2 p~IvliG~~G~GKSTig~~La~   23 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLAK   23 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999998865

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.37  E-value=8.2e-05  Score=49.61  Aligned_cols=24  Identities=25%  Similarity=0.301  Sum_probs=20.4

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHc
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~   55 (200)
                      .+.-|+++|.|||||||+++.+..
T Consensus        13 ~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          13 NPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            344688999999999999999865

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.36  E-value=5e-05  Score=51.98  Aligned_cols=22  Identities=27%  Similarity=0.475  Sum_probs=19.6

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHc
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~   55 (200)
                      .=|+++|.|||||||++++|..
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            3488999999999999999985

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.35  E-value=7.4e-05  Score=49.60  Aligned_cols=25  Identities=20%  Similarity=0.217  Sum_probs=21.3

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHc
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~   55 (200)
                      ++-+.|.++|.+||||||+.+.|..
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~   28 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQV   28 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3446789999999999999998875

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=97.35  E-value=5e-05  Score=53.46  Aligned_cols=22  Identities=32%  Similarity=0.388  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      +|+|+|++|||||||++.+.+-
T Consensus        31 ~vaIvG~sGsGKSTLl~ll~gl   52 (241)
T d2pmka1          31 VIGIVGRSGSGKSTLTKLIQRF   52 (241)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            6899999999999999999884

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.33  E-value=7.5e-05  Score=53.15  Aligned_cols=24  Identities=21%  Similarity=0.360  Sum_probs=21.1

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHcC
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      +..|++.|+||+|||||++++.+.
T Consensus        32 P~~ilL~GpPGtGKT~la~~la~~   55 (273)
T d1gvnb_          32 PTAFLLGGQPGSGKTSLRSAIFEE   55 (273)
T ss_dssp             CEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHH
Confidence            345999999999999999999874

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.32  E-value=6e-05  Score=49.67  Aligned_cols=21  Identities=29%  Similarity=0.548  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHc
Q 028986           35 KLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~   55 (200)
                      +|+++|++||||||+.+.|..
T Consensus         2 ~I~liG~~GsGKsTi~k~La~   22 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAK   22 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999865

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.29  E-value=6.2e-05  Score=51.51  Aligned_cols=22  Identities=18%  Similarity=0.356  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .++++|+.|||||||++.+.+.
T Consensus        29 i~~l~G~NGsGKSTLl~~i~gl   50 (200)
T d1sgwa_          29 VVNFHGPNGIGKTTLLKTISTY   50 (200)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCChHHHHHHHHhcc
Confidence            4789999999999999999884

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.29  E-value=7.1e-05  Score=49.57  Aligned_cols=21  Identities=38%  Similarity=0.491  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 028986           36 LVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        36 i~i~G~~~sGKSsli~~l~~~   56 (200)
                      |++.|++||||||+.+.|...
T Consensus         7 I~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           7 LLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             EEEEECTTSCHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            778899999999999999764

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.29  E-value=6.9e-05  Score=50.58  Aligned_cols=21  Identities=33%  Similarity=0.619  Sum_probs=19.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 028986           36 LVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        36 i~i~G~~~sGKSsli~~l~~~   56 (200)
                      |+|+||+||||+||+++|...
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            889999999999999999764

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.29  E-value=9.9e-05  Score=49.78  Aligned_cols=25  Identities=24%  Similarity=0.230  Sum_probs=21.7

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHc
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~   55 (200)
                      ..++-|+|.|++|||||||++.|..
T Consensus        20 ~~~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          20 AGRLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3466789999999999999999975

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.28  E-value=7.4e-05  Score=49.90  Aligned_cols=20  Identities=25%  Similarity=0.333  Sum_probs=17.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHc
Q 028986           36 LVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        36 i~i~G~~~sGKSsli~~l~~   55 (200)
                      |+|.|++||||||+++.|..
T Consensus         4 I~i~G~~GsGKsT~~~~L~~   23 (190)
T d1khta_           4 VVVTGVPGVGSTTSSQLAMD   23 (190)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            77889999999999998864

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.27  E-value=0.00071  Score=47.36  Aligned_cols=22  Identities=27%  Similarity=0.570  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      ++++.|++|+||||+++.+...
T Consensus        35 ~lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          35 HLLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             CEEEECSTTSSHHHHHHTHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHh
Confidence            6999999999999999998764

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=97.26  E-value=7.3e-05  Score=52.66  Aligned_cols=22  Identities=36%  Similarity=0.363  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .++|+|++|||||||++.+.+-
T Consensus        30 ~vaivG~sGsGKSTLl~ll~gl   51 (242)
T d1mv5a_          30 IIAFAGPSGGGKSTIFSLLERF   51 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            6899999999999999999874

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.25  E-value=8.3e-05  Score=51.90  Aligned_cols=22  Identities=32%  Similarity=0.430  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      -++++|++|||||||++.+.+-
T Consensus        28 i~~liGpsGsGKSTLl~~i~Gl   49 (232)
T d2awna2          28 FVVFVGPSGCGKSTLLRMIAGL   49 (232)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHhcC
Confidence            4789999999999999999874

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.25  E-value=7e-05  Score=53.10  Aligned_cols=22  Identities=41%  Similarity=0.511  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .++|+|++|||||||++.+.+-
T Consensus        43 ~iaivG~sGsGKSTLl~ll~gl   64 (253)
T d3b60a1          43 TVALVGRSGSGKSTIASLITRF   64 (253)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTT
T ss_pred             EEEEECCCCChHHHHHHHHhcc
Confidence            6899999999999999999874

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.25  E-value=8.3e-05  Score=49.06  Aligned_cols=21  Identities=38%  Similarity=0.564  Sum_probs=18.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 028986           36 LVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        36 i~i~G~~~sGKSsli~~l~~~   56 (200)
                      ++|.|++||||||+.+.|...
T Consensus         9 ivl~G~~GsGKsT~a~~La~~   29 (171)
T d1knqa_           9 YVLMGVSGSGKSAVASEVAHQ   29 (171)
T ss_dssp             EEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            567899999999999999763

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.24  E-value=8.2e-05  Score=49.96  Aligned_cols=21  Identities=43%  Similarity=0.510  Sum_probs=18.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 028986           36 LVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        36 i~i~G~~~sGKSsli~~l~~~   56 (200)
                      |+|+||+|||||||++.|...
T Consensus         5 ivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           5 VVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            678899999999999999764

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.23  E-value=8.8e-05  Score=49.07  Aligned_cols=21  Identities=38%  Similarity=0.419  Sum_probs=18.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 028986           36 LVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        36 i~i~G~~~sGKSsli~~l~~~   56 (200)
                      |+|.|++||||||+.+.|...
T Consensus         6 I~l~G~~GsGKsTva~~L~~~   26 (178)
T d1qhxa_           6 IILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            556699999999999999874

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.22  E-value=8.3e-05  Score=52.67  Aligned_cols=22  Identities=27%  Similarity=0.350  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .++|+|++|||||||++.+.+-
T Consensus        42 ~vaivG~sGsGKSTLl~li~gl   63 (251)
T d1jj7a_          42 VTALVGPNGSGKSTVAALLQNL   63 (251)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcc
Confidence            6899999999999999998874

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.22  E-value=8e-05  Score=51.94  Aligned_cols=22  Identities=27%  Similarity=0.279  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      -++|+|++|||||||++.+.+-
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~gl   54 (230)
T d1l2ta_          33 FVSIMGPSGSGKSTMLNIIGCL   54 (230)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCcchhhHhccCC
Confidence            4789999999999999988874

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.21  E-value=9.8e-05  Score=51.72  Aligned_cols=22  Identities=36%  Similarity=0.424  Sum_probs=19.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCC
Q 028986           36 LVLLGDSGVGKSCIVLRFVRGQ   57 (200)
Q Consensus        36 i~i~G~~~sGKSsli~~l~~~~   57 (200)
                      ++++|++|||||||++.+.+-.
T Consensus        27 ~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          27 CVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEECCCCChHHHHHHHHHcCC
Confidence            5689999999999999999853

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.19  E-value=0.0001  Score=51.59  Aligned_cols=23  Identities=39%  Similarity=0.469  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQ   57 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~   57 (200)
                      -+.++|++|||||||++.+.+-.
T Consensus        34 ~~~liGpsGaGKSTLl~~i~Gl~   56 (239)
T d1v43a3          34 FLVLLGPSGCGKTTTLRMIAGLE   56 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            47899999999999999998853

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=97.18  E-value=0.00013  Score=51.00  Aligned_cols=24  Identities=25%  Similarity=0.469  Sum_probs=21.1

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHcC
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      ...+++.||||+||||+++.+.+.
T Consensus        35 ~~~~Ll~GPpG~GKTtla~~la~~   58 (239)
T d1ixsb2          35 LEHLLLFGPPGLGKTTLAHVIAHE   58 (239)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            346999999999999999999874

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.18  E-value=0.00011  Score=49.21  Aligned_cols=21  Identities=43%  Similarity=0.670  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 028986           36 LVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        36 i~i~G~~~sGKSsli~~l~~~   56 (200)
                      |+|+||+|+||+||+++|...
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            888999999999999999863

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.18  E-value=0.0001  Score=53.04  Aligned_cols=22  Identities=23%  Similarity=0.546  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .++|+|++|||||||++.+.+.
T Consensus        64 ~vaivG~nGsGKSTLl~~i~Gl   85 (281)
T d1r0wa_          64 MLAITGSTGSGKTSLLMLILGE   85 (281)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHhCC
Confidence            5889999999999999999884

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.17  E-value=0.00013  Score=50.47  Aligned_cols=25  Identities=16%  Similarity=0.328  Sum_probs=21.6

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHcC
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      +.+.|+|-||+||||||+...|...
T Consensus         2 k~i~IaIdGp~GsGKgT~ak~La~~   26 (223)
T d1q3ta_           2 KTIQIAIDGPASSGKSTVAKIIAKD   26 (223)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHH
Confidence            4578899999999999999999763

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.16  E-value=0.00018  Score=48.71  Aligned_cols=22  Identities=27%  Similarity=0.557  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .|+|+|+|||||||++..|...
T Consensus        10 iI~i~GppGSGKsT~a~~La~~   31 (196)
T d1ukza_          10 VIFVLGGPGAGKGTQCEKLVKD   31 (196)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5889999999999999999763

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.16  E-value=0.00012  Score=49.56  Aligned_cols=20  Identities=40%  Similarity=0.703  Sum_probs=18.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHc
Q 028986           36 LVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        36 i~i~G~~~sGKSsli~~l~~   55 (200)
                      |+|+||+||||+||++.|..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~   22 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQ   22 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999975

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.13  E-value=0.00013  Score=50.95  Aligned_cols=23  Identities=22%  Similarity=0.411  Sum_probs=20.6

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcC
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      ..+++.||||+|||++++.+...
T Consensus        36 ~~~L~~GPpGtGKT~lA~~la~~   58 (238)
T d1in4a2          36 DHVLLAGPPGLGKTTLAHIIASE   58 (238)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHhc
Confidence            36999999999999999999874

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.12  E-value=9.2e-05  Score=49.90  Aligned_cols=24  Identities=25%  Similarity=0.361  Sum_probs=20.8

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHc
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~   55 (200)
                      +...|.++|.+||||||+.+.|..
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            455688999999999999999975

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.12  E-value=0.00012  Score=49.56  Aligned_cols=22  Identities=23%  Similarity=0.450  Sum_probs=19.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      -|+|+|+|||||||++..|...
T Consensus        10 iI~l~G~pGSGKsT~a~~La~~   31 (194)
T d3adka_          10 IIFVVGGPGSGKGTQCEKIVQK   31 (194)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4788999999999999999763

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=97.11  E-value=8.8e-05  Score=51.64  Aligned_cols=23  Identities=26%  Similarity=0.405  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQ   57 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~   57 (200)
                      -++++|++|||||||++.+.+-.
T Consensus        28 ~~~liGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          28 YFVILGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Confidence            37899999999999999999853

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=97.11  E-value=0.00014  Score=51.04  Aligned_cols=23  Identities=30%  Similarity=0.447  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQ   57 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~   57 (200)
                      .+.++|++|||||||++.+.+-.
T Consensus        31 ~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          31 FMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            47899999999999999998853

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.10  E-value=0.00015  Score=49.79  Aligned_cols=21  Identities=24%  Similarity=0.520  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 028986           36 LVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        36 i~i~G~~~sGKSsli~~l~~~   56 (200)
                      |+|+||+||||+||++.|...
T Consensus         5 ivi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           5 YIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             EEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            678899999999999999874

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.08  E-value=0.00015  Score=48.07  Aligned_cols=21  Identities=19%  Similarity=0.487  Sum_probs=18.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHc
Q 028986           35 KLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~   55 (200)
                      .|+++|++||||||+.+.|..
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~   24 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELAR   24 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            378999999999999999965

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=97.08  E-value=0.00012  Score=51.25  Aligned_cols=22  Identities=27%  Similarity=0.285  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      -+.|+|++|||||||++.+.+-
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~Gl   54 (240)
T d3dhwc1          33 IYGVIGASGAGKSTLIRCVNLL   54 (240)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHcCC
Confidence            4789999999999999999885

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=97.07  E-value=0.00014  Score=51.13  Aligned_cols=23  Identities=22%  Similarity=0.348  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQ   57 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~   57 (200)
                      -++++|+.|+|||||++.+.+-.
T Consensus        34 i~~liGpnGaGKSTl~~~i~Gl~   56 (240)
T d1ji0a_          34 IVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            37899999999999999999853

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=97.02  E-value=0.00012  Score=51.22  Aligned_cols=22  Identities=36%  Similarity=0.546  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      -++++|+.|+|||||++.+.+-
T Consensus        27 i~~iiG~nGaGKSTLl~~l~Gl   48 (231)
T d1l7vc_          27 ILHLVGPNGAGKSTLLARMAGM   48 (231)
T ss_dssp             EEECBCCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            4789999999999999999984

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=97.02  E-value=0.00017  Score=50.64  Aligned_cols=23  Identities=22%  Similarity=0.260  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQ   57 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~   57 (200)
                      -+.++|+.|+|||||++.+.+..
T Consensus        30 i~glvG~nGaGKSTLl~~l~G~~   52 (238)
T d1vpla_          30 IFGLIGPNGAGKTTTLRIISTLI   52 (238)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            37799999999999999999853

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.02  E-value=0.00022  Score=48.97  Aligned_cols=23  Identities=22%  Similarity=0.387  Sum_probs=20.6

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHc
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~   55 (200)
                      ++-|+|.|++|||||||.+.|..
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~   24 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQ   24 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            56799999999999999999865

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.00  E-value=9.5e-05  Score=52.44  Aligned_cols=22  Identities=32%  Similarity=0.392  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      +++|+|++|||||||++.+.+-
T Consensus        46 ~vaivG~sGsGKSTLl~ll~gl   67 (255)
T d2hyda1          46 TVAFVGMSGGGKSTLINLIPRF   67 (255)
T ss_dssp             EEEEECSTTSSHHHHHTTTTTS
T ss_pred             EEEEECCCCCcHHHHHHHHHhc
Confidence            6899999999999999988773

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.98  E-value=0.00063  Score=44.33  Aligned_cols=25  Identities=28%  Similarity=0.517  Sum_probs=20.9

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHcCC
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVRGQ   57 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~~~   57 (200)
                      ..-|++-|+-|+|||||++.+...-
T Consensus        33 g~ii~L~G~LGaGKTtfvr~~~~~l   57 (158)
T d1htwa_          33 AIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CeEEEEecCCCccHHHHHHHHHhhc
Confidence            3457888999999999999998743

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.97  E-value=0.00021  Score=52.52  Aligned_cols=23  Identities=17%  Similarity=0.390  Sum_probs=21.0

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcC
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .+|+|.|++|||||||+++|+..
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~  189 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEF  189 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGG
T ss_pred             CCEEEEeeccccchHHHHHHhhh
Confidence            46999999999999999999974

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.96  E-value=0.00031  Score=49.50  Aligned_cols=23  Identities=22%  Similarity=0.403  Sum_probs=21.0

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHc
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~   55 (200)
                      ...|++.||||+|||+|++++..
T Consensus        40 ~~~vLL~GppGtGKT~la~alA~   62 (246)
T d1d2na_          40 LVSVLLEGPPHSGKTALAAKIAE   62 (246)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECcCCCCHHHHHHHHhh
Confidence            45799999999999999999986

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.93  E-value=0.00022  Score=50.65  Aligned_cols=22  Identities=27%  Similarity=0.330  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .++|+|++|||||||++.+.+-
T Consensus        30 i~~iiG~sGsGKSTLl~~i~Gl   51 (258)
T d1b0ua_          30 VISIIGSSGSGKSTFLRCINFL   51 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHHcC
Confidence            4789999999999999999874

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=96.92  E-value=0.00024  Score=47.46  Aligned_cols=21  Identities=33%  Similarity=0.526  Sum_probs=17.7

Q ss_pred             eEE-EEcCCCCcHHHHHHHHHc
Q 028986           35 KLV-LLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        35 ~i~-i~G~~~sGKSsli~~l~~   55 (200)
                      ||+ |.|.+||||||+++.|..
T Consensus         2 kiivi~G~~GsGKTT~~~~La~   23 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            555 569999999999999964

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.92  E-value=0.00022  Score=50.53  Aligned_cols=21  Identities=24%  Similarity=0.409  Sum_probs=19.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 028986           36 LVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        36 i~i~G~~~sGKSsli~~l~~~   56 (200)
                      ++++|+.|||||||++.+.+.
T Consensus        33 ~~liG~nGaGKSTLl~~i~Gl   53 (254)
T d1g6ha_          33 TLIIGPNGSGKSTLINVITGF   53 (254)
T ss_dssp             EEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEECCCCCcHHHHHHHHHCC
Confidence            689999999999999999985

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.92  E-value=0.00012  Score=51.32  Aligned_cols=23  Identities=26%  Similarity=0.413  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRGQ   57 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~~   57 (200)
                      .++|+|++|||||||++.+.+-.
T Consensus        33 ~~~iiG~sGsGKSTll~~i~gl~   55 (242)
T d1oxxk2          33 RFGILGPSGAGKTTFMRIIAGLD   55 (242)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCc
Confidence            58899999999999999999853

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.86  E-value=0.0004  Score=46.96  Aligned_cols=23  Identities=39%  Similarity=0.641  Sum_probs=20.3

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcC
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      -+++++|++|+|||+++..|...
T Consensus        44 ~n~lLvG~pGVGKTalv~~LA~r   66 (195)
T d1jbka_          44 NNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEecCCcccHHHHHHHHHH
Confidence            37999999999999999888763

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.85  E-value=0.00046  Score=46.41  Aligned_cols=25  Identities=20%  Similarity=0.254  Sum_probs=21.9

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHcC
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      +++-|+|.|.+||||||+++.|...
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~~~   26 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLRSW   26 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHC
Confidence            5677999999999999999988664

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.85  E-value=0.00029  Score=51.37  Aligned_cols=23  Identities=30%  Similarity=0.609  Sum_probs=20.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcC
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      -.|+++||||+|||.|++++...
T Consensus        50 ~~iLl~GPpG~GKT~lAkalA~~   72 (309)
T d1ofha_          50 KNILMIGPTGVGKTEIARRLAKL   72 (309)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHhhc
Confidence            46999999999999999999874

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.84  E-value=0.00051  Score=48.20  Aligned_cols=23  Identities=22%  Similarity=0.362  Sum_probs=20.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcC
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      -.+++.||+|+||||+++.+...
T Consensus        53 ~~lll~GPpG~GKTt~a~~la~~   75 (253)
T d1sxja2          53 RAAMLYGPPGIGKTTAAHLVAQE   75 (253)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999999874

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.84  E-value=0.00035  Score=49.74  Aligned_cols=23  Identities=35%  Similarity=0.537  Sum_probs=20.2

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcC
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      =+++++|++|+|||++++.|...
T Consensus        40 ~n~lLVG~~GvGKTalv~~la~r   62 (268)
T d1r6bx2          40 NNPLLVGESGVGKTAIAEGLAWR   62 (268)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcEEECCCCCcHHHHHHHHHHH
Confidence            37999999999999999988763

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.83  E-value=0.00042  Score=48.91  Aligned_cols=24  Identities=25%  Similarity=0.385  Sum_probs=21.0

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHcC
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .-.++|.|++|+|||++++.+...
T Consensus        43 ~~~lll~GppGtGKT~l~~~l~~~   66 (276)
T d1fnna2          43 YPRATLLGRPGTGKTVTLRKLWEL   66 (276)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHH
Confidence            347999999999999999999874

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.82  E-value=0.00036  Score=48.41  Aligned_cols=22  Identities=36%  Similarity=0.652  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .+++.|++|+|||++++.+...
T Consensus        47 ~lll~Gp~G~GKTtla~~iak~   68 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALALARE   68 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            5899999999999999998763

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.81  E-value=0.00035  Score=47.18  Aligned_cols=28  Identities=18%  Similarity=0.318  Sum_probs=23.5

Q ss_pred             CCCceeeEEEEcCCCCcHHHHHHHHHcC
Q 028986           29 AKNLRVKLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        29 ~~~~~~~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      +..+++-|+|-|..||||||+++.|...
T Consensus         5 ~~~kp~~I~ieG~~GsGKTTl~~~L~~~   32 (197)
T d2vp4a1           5 EGTQPFTVLIEGNIGSGKTTYLNHFEKY   32 (197)
T ss_dssp             TTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence            3455678999999999999999998764

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.72  E-value=0.00044  Score=47.45  Aligned_cols=22  Identities=23%  Similarity=0.412  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      -|+|.|||||||+|+...|...
T Consensus         5 iI~I~GppGSGKgT~ak~La~~   26 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEA   26 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4778899999999999999763

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.69  E-value=0.00039  Score=49.37  Aligned_cols=21  Identities=24%  Similarity=0.377  Sum_probs=17.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 028986           36 LVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        36 i~i~G~~~sGKSsli~~l~~~   56 (200)
                      +++.|+||+|||++++.+...
T Consensus        49 l~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHHH
Confidence            455699999999999999864

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.68  E-value=0.00049  Score=48.48  Aligned_cols=22  Identities=27%  Similarity=0.502  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .|++.|++|+|||+|++++...
T Consensus        44 giLl~GppGtGKT~la~aia~~   65 (247)
T d1ixza_          44 GVLLVGPPGVGKTHLARAVAGE   65 (247)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEecCCCCChhHHHHHHHHH
Confidence            5999999999999999999973

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.64  E-value=0.00047  Score=48.74  Aligned_cols=21  Identities=29%  Similarity=0.295  Sum_probs=18.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHc
Q 028986           35 KLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~   55 (200)
                      .|+|.|++|+|||||++++..
T Consensus        31 ~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          31 ITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHH
Confidence            478889999999999999875

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.63  E-value=0.00075  Score=46.21  Aligned_cols=25  Identities=24%  Similarity=0.320  Sum_probs=21.5

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHc
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~   55 (200)
                      ++..-|.+.|.||||||||.+.|..
T Consensus        22 ~kg~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4556789999999999999999875

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.62  E-value=0.00055  Score=47.49  Aligned_cols=22  Identities=23%  Similarity=0.626  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      ++++.||+|+||||+++.+...
T Consensus        35 ~lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          35 HMLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCChHHHHHHHHHH
Confidence            4899999999999999999864

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.62  E-value=0.00056  Score=47.22  Aligned_cols=22  Identities=23%  Similarity=0.472  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      ++++.|++|+||||+++.+...
T Consensus        38 ~~ll~Gp~G~GKTt~a~~la~~   59 (224)
T d1sxjb2          38 HMIISGMPGIGKTTSVHCLAHE   59 (224)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCchhhHHHHHHH
Confidence            5899999999999999988763

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.55  E-value=0.00093  Score=48.48  Aligned_cols=27  Identities=19%  Similarity=0.262  Sum_probs=22.6

Q ss_pred             CCCceeeEEEEcCCCCcHHHHHHHHHc
Q 028986           29 AKNLRVKLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        29 ~~~~~~~i~i~G~~~sGKSsli~~l~~   55 (200)
                      ..+.++-|+|.|++|||||||.+.|..
T Consensus        76 ~~k~P~iIGIaG~sgSGKSTla~~L~~  102 (308)
T d1sq5a_          76 GQRIPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             -CCCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCCCEEEEEeCCCCCCCcHHHHHHHH
Confidence            346678899999999999999988854

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.55  E-value=0.00072  Score=47.85  Aligned_cols=23  Identities=17%  Similarity=0.401  Sum_probs=20.6

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcC
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      -.+++.||||+|||++++++...
T Consensus        46 ~~iLL~GppGtGKT~la~~iA~~   68 (256)
T d1lv7a_          46 KGVLMVGPPGTGKTLLAKAIAGE   68 (256)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEeeCCCCCCccHHHHHHHHH
Confidence            35999999999999999999873

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.54  E-value=0.00037  Score=48.76  Aligned_cols=21  Identities=29%  Similarity=0.534  Sum_probs=18.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHc
Q 028986           35 KLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~   55 (200)
                      .+++.|++|+|||++++.+..
T Consensus        36 ~~Ll~Gp~G~GKtt~a~~~~~   56 (239)
T d1njfa_          36 AYLFSGTRGVGKTSIARLLAK   56 (239)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            378999999999999998865

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.52  E-value=0.00063  Score=52.01  Aligned_cols=21  Identities=33%  Similarity=0.763  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHc
Q 028986           35 KLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~   55 (200)
                      ||+++||+|||||-|+++|..
T Consensus        51 NILliGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_          51 NILMIGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             CEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            899999999999999999965

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.51  E-value=0.00071  Score=46.72  Aligned_cols=22  Identities=27%  Similarity=0.643  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      ++++.|++|+||||+++.+...
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHHH
Confidence            5899999999999999999874

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.47  E-value=0.00092  Score=47.31  Aligned_cols=22  Identities=27%  Similarity=0.474  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .|++.||||+|||+|++++...
T Consensus        40 giLL~GppGtGKT~l~~ala~~   61 (258)
T d1e32a2          40 GILLYGPPGTGKTLIARAVANE   61 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eeEEecCCCCCchHHHHHHHHH
Confidence            6999999999999999999884

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=96.27  E-value=0.036  Score=38.77  Aligned_cols=88  Identities=16%  Similarity=0.138  Sum_probs=49.5

Q ss_pred             EEEEEEeCCChhhhhh-cccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcC-CCCCe-EEEEEeCCCCCCCCcCCH
Q 028986           83 VKFEIWDTAGQERYAA-LAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHG-SPDIV-MALVGNKADLHEKREVPA  159 (200)
Q Consensus        83 ~~~~l~D~~g~~~~~~-~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p-~iiv~nK~D~~~~~~~~~  159 (200)
                      +.+.++|+|+.-.... ........+|.++++... +..++......+..+.... ..+.+ .-+|.|+.+....    .
T Consensus       116 ~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~-~~~sl~~~~~~~~~i~~~~~~~~~~~~~vv~N~~~~~~~----~  190 (269)
T d1cp2a_         116 LDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASG-EMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVANE----Y  190 (269)
T ss_dssp             CSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECS-SHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSSCC----H
T ss_pred             CCEEEeccCCccchhHHHHHHHhhccCceeeccch-hhhHHHHHHHHHHHHHhhccccceeccceEEeeecCCCc----c
Confidence            4688888876422111 111122447888887766 4555665555555554432 22333 3467799875432    4


Q ss_pred             HHHHHHHHHcCCeEEE
Q 028986          160 QDGIEYAEKNGMFFIE  175 (200)
Q Consensus       160 ~~~~~~~~~~~~~~~~  175 (200)
                      +..+++++..+.+++.
T Consensus       191 ~~~~~~~~~~~~~~~~  206 (269)
T d1cp2a_         191 ELLDAFAKELGSQLIH  206 (269)
T ss_dssp             HHHHHHHHHHTCCEEE
T ss_pred             chhhhhHhhcCCeEEE
Confidence            4566677777776554

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.22  E-value=0.0011  Score=47.16  Aligned_cols=23  Identities=17%  Similarity=0.382  Sum_probs=20.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcC
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      -.|++.|++|+|||+|++++...
T Consensus        42 ~giLL~Gp~GtGKT~l~~ala~~   64 (265)
T d1r7ra3          42 KGVLFYGPPGCGKTLLAKAIANE   64 (265)
T ss_dssp             CEEEEBCCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcchhHHHHHHHH
Confidence            35999999999999999999884

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.14  E-value=0.0017  Score=43.96  Aligned_cols=21  Identities=24%  Similarity=0.428  Sum_probs=18.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHc
Q 028986           35 KLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~   55 (200)
                      -|+|-|..||||||+++.|..
T Consensus         2 lI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            488899999999999998875

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.09  E-value=0.0026  Score=45.50  Aligned_cols=24  Identities=21%  Similarity=0.351  Sum_probs=20.4

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHH
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFV   54 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~   54 (200)
                      +.++=|.|-|.+|||||||...|.
T Consensus        25 ~~P~iIGi~G~qGSGKSTl~~~l~   48 (286)
T d1odfa_          25 KCPLFIFFSGPQGSGKSFTSIQIY   48 (286)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCEEEEeECCCCCCHHHHHHHHH
Confidence            456789999999999999987764

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=96.03  E-value=0.0013  Score=49.24  Aligned_cols=22  Identities=41%  Similarity=0.685  Sum_probs=18.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHc
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~   55 (200)
                      =++++||+||||||+++..|..
T Consensus        44 ~n~llvG~~GvGKtaiv~~la~   65 (387)
T d1qvra2          44 NNPVLIGEPGVGKTAIVEGLAQ   65 (387)
T ss_dssp             CCCEEEECTTSCHHHHHHHHHH
T ss_pred             CCCeEECCCCCCHHHHHHHHHH
Confidence            3689999999999999866654

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.00  E-value=0.0011  Score=45.30  Aligned_cols=21  Identities=19%  Similarity=0.490  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHc
Q 028986           35 KLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~   55 (200)
                      .+++.|++|+|||++++.+..
T Consensus        26 ~lLl~Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2          26 ALLIQALPGMGDDALIYALSR   46 (207)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            389999999999999998776

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.99  E-value=0.0021  Score=43.48  Aligned_cols=22  Identities=18%  Similarity=0.222  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCC
Q 028986           36 LVLLGDSGVGKSCIVLRFVRGQ   57 (200)
Q Consensus        36 i~i~G~~~sGKSsli~~l~~~~   57 (200)
                      +.|.|++|+|||+|+..|....
T Consensus        26 ~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          26 TEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEEeCCCCCHHHHHHHHHHHH
Confidence            7789999999999999988643

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=95.93  E-value=0.0026  Score=42.10  Aligned_cols=24  Identities=42%  Similarity=0.654  Sum_probs=20.9

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcCC
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRGQ   57 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~~   57 (200)
                      .-|+|.|++|+||||++-.|....
T Consensus        15 ~gvl~~G~sG~GKStlal~l~~~g   38 (176)
T d1kkma_          15 LGVLITGDSGVGKSETALELVQRG   38 (176)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHcC
Confidence            358999999999999999988753

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=95.91  E-value=0.001  Score=48.79  Aligned_cols=21  Identities=33%  Similarity=0.585  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHc
Q 028986           35 KLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~   55 (200)
                      +|++.|+||+|||+|++++..
T Consensus        30 ~vLl~G~pG~GKT~lar~~~~   50 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALAA   50 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHH
Confidence            699999999999999999864

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=95.86  E-value=0.0023  Score=47.52  Aligned_cols=24  Identities=21%  Similarity=0.559  Sum_probs=20.9

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHc
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~   55 (200)
                      ..-+++++||+|||||-|+++|..
T Consensus        67 p~~niLfiGPTGvGKTElAk~LA~   90 (364)
T d1um8a_          67 SKSNILLIGPTGSGKTLMAQTLAK   90 (364)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcceeeeCCCCccHHHHHHHHHh
Confidence            344699999999999999999975

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=95.85  E-value=0.0028  Score=47.01  Aligned_cols=21  Identities=14%  Similarity=0.291  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHc
Q 028986           35 KLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~   55 (200)
                      .+++.||||+|||+|++++.+
T Consensus       156 ~~~~~g~~~~gk~~~~~~~~~  176 (362)
T d1svma_         156 YWLFKGPIDSGKTTLAAALLE  176 (362)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999987

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.83  E-value=0.0026  Score=43.57  Aligned_cols=21  Identities=19%  Similarity=0.393  Sum_probs=19.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 028986           36 LVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        36 i~i~G~~~sGKSsli~~l~~~   56 (200)
                      +.+.|++|+|||.|++++.+.
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~   59 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNE   59 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            789999999999999999874

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=95.81  E-value=0.0029  Score=41.89  Aligned_cols=23  Identities=39%  Similarity=0.621  Sum_probs=20.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcC
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .-|+|.|++|+|||+++..|...
T Consensus        16 ~gvli~G~sG~GKS~lal~l~~~   38 (177)
T d1knxa2          16 VGVLLTGRSGIGKSECALDLINK   38 (177)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHTT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHc
Confidence            35899999999999999999874

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.80  E-value=0.004  Score=45.28  Aligned_cols=21  Identities=24%  Similarity=0.643  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHc
Q 028986           35 KLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~   55 (200)
                      .++++||+|+|||.|++.|..
T Consensus        54 ~~lf~Gp~GvGKT~lak~la~   74 (315)
T d1r6bx3          54 SFLFAGPTGVGKTEVTVQLSK   74 (315)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCcchhHHHHHHHHh
Confidence            689999999999999999876

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.77  E-value=0.0028  Score=43.08  Aligned_cols=20  Identities=30%  Similarity=0.378  Sum_probs=17.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHc
Q 028986           36 LVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        36 i~i~G~~~sGKSsli~~l~~   55 (200)
                      |+|-|..||||||+++.|..
T Consensus         5 IviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           5 IVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             EEEEECTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            77789999999999998875

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=95.75  E-value=0.0034  Score=42.72  Aligned_cols=23  Identities=30%  Similarity=0.369  Sum_probs=19.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcC
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      +-|+|+|..||||||+++.|...
T Consensus         4 ~iIgitG~igSGKStv~~~l~~~   26 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFADL   26 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEEECCCcCCHHHHHHHHHHC
Confidence            45789999999999999988654

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=95.70  E-value=0.00053  Score=46.14  Aligned_cols=20  Identities=40%  Similarity=0.597  Sum_probs=17.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHc
Q 028986           36 LVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        36 i~i~G~~~sGKSsli~~l~~   55 (200)
                      .+|+|+.|||||||+.++..
T Consensus        27 tvi~G~NGsGKStil~Ai~~   46 (222)
T d1qhla_          27 TTLSGGNGAGKSTTMAAFVT   46 (222)
T ss_dssp             HHHHSCCSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            35779999999999999853

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=95.61  E-value=0.0056  Score=41.45  Aligned_cols=22  Identities=32%  Similarity=0.379  Sum_probs=19.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHc
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~   55 (200)
                      +-|+|.|..||||||+++.|..
T Consensus         3 ~iIgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            5588999999999999998864

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.57  E-value=0.0031  Score=43.56  Aligned_cols=22  Identities=23%  Similarity=0.237  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      -++|.|+||+|||+|+..+...
T Consensus        36 ~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          36 ITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            3778899999999999988764

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.57  E-value=0.0035  Score=42.70  Aligned_cols=20  Identities=35%  Similarity=0.428  Sum_probs=17.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHc
Q 028986           36 LVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        36 i~i~G~~~sGKSsli~~l~~   55 (200)
                      |+|-|..||||||+++.|..
T Consensus         6 I~ieG~dGsGKsT~~~~L~~   25 (209)
T d1nn5a_           6 IVLEGVDRAGKSTQSRKLVE   25 (209)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            66779999999998888765

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=95.57  E-value=0.004  Score=40.90  Aligned_cols=24  Identities=38%  Similarity=0.685  Sum_probs=21.0

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcCC
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRGQ   57 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~~   57 (200)
                      .-|+|.|++|+||||+.-.|....
T Consensus        16 ~gvli~G~sg~GKS~la~~l~~~g   39 (169)
T d1ko7a2          16 VGVLITGDSGIGKSETALELIKRG   39 (169)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHTT
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHcC
Confidence            468999999999999999888753

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=95.52  E-value=0.0041  Score=45.24  Aligned_cols=21  Identities=19%  Similarity=0.379  Sum_probs=17.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 028986           36 LVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        36 i~i~G~~~sGKSsli~~l~~~   56 (200)
                      +++.|+||+|||.|+++|...
T Consensus       126 ~l~~G~pG~GKT~la~ala~~  146 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHALGEA  146 (321)
T ss_dssp             EEEECSSSSCHHHHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHHH
Confidence            445799999999999999873

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.51  E-value=0.0038  Score=43.35  Aligned_cols=22  Identities=18%  Similarity=0.258  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      -++|.|+||+|||+|...+...
T Consensus        38 ~~li~G~pGsGKT~~~lq~~~~   59 (254)
T d1pzna2          38 ITEVFGEFGSGKTQLAHTLAVM   59 (254)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            3778999999999999988764

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.50  E-value=0.004  Score=44.38  Aligned_cols=22  Identities=36%  Similarity=0.449  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      -|.|.|..|+|||||+..+++.
T Consensus        46 ~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          46 FLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            5789999999999999998764

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.41  E-value=0.0026  Score=45.74  Aligned_cols=19  Identities=32%  Similarity=0.484  Sum_probs=16.7

Q ss_pred             EEEcCCCCcHHHHHHHHHc
Q 028986           37 VLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        37 ~i~G~~~sGKSsli~~l~~   55 (200)
                      +++|+.|||||+++.++..
T Consensus        28 vlvG~NgsGKS~iL~Ai~~   46 (308)
T d1e69a_          28 AIVGPNGSGKSNIIDAIKW   46 (308)
T ss_dssp             EEECCTTTCSTHHHHHHHH
T ss_pred             EEECCCCCcHHHHHHHHHH
Confidence            6889999999999998843

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.38  E-value=0.0019  Score=46.20  Aligned_cols=21  Identities=29%  Similarity=0.469  Sum_probs=15.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHc
Q 028986           35 KLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~   55 (200)
                      =|+|.|.+||||||+.++|..
T Consensus         6 IIgIaG~SGSGKTTva~~l~~   26 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFDQ   26 (288)
T ss_dssp             EEEEESCC---CCTHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            499999999999999998754

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.37  E-value=0.0025  Score=44.09  Aligned_cols=22  Identities=27%  Similarity=0.312  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      .|+|-|+.||||||+++.|...
T Consensus         4 ~I~ieG~dGsGKST~~~~L~~~   25 (241)
T d1p5zb_           4 KISIEGNIAAGKSTFVNILKQL   25 (241)
T ss_dssp             EEEEECSTTSSHHHHHTTTGGG
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4788899999999999988764

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=95.31  E-value=0.0048  Score=46.41  Aligned_cols=21  Identities=24%  Similarity=0.438  Sum_probs=19.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 028986           36 LVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        36 i~i~G~~~sGKSsli~~l~~~   56 (200)
                      |+|.|++||||||.+..++..
T Consensus       161 iLvtGpTGSGKSTTl~~~l~~  181 (401)
T d1p9ra_         161 ILVTGPTGSGKSTTLYAGLQE  181 (401)
T ss_dssp             EEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEcCCCCCccHHHHHHhhh
Confidence            889999999999999999884

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.26  E-value=0.0053  Score=42.43  Aligned_cols=22  Identities=36%  Similarity=0.670  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      -++|.|+||+|||+|+..+...
T Consensus        28 l~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          28 IILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            4788999999999999888764

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.06  E-value=0.0072  Score=41.85  Aligned_cols=22  Identities=14%  Similarity=0.131  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      -++|.|++|+|||+|...+...
T Consensus        39 ~~~i~G~~GsGKT~lalq~~~~   60 (258)
T d1v5wa_          39 ITEAFGEFRTGKTQLSHTLCVT   60 (258)
T ss_dssp             EEEEECCTTCTHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4788999999999999999864

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=94.99  E-value=0.0069  Score=41.71  Aligned_cols=22  Identities=23%  Similarity=0.185  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      -++|.|++|+|||+|+..+...
T Consensus        36 l~~i~G~~G~GKT~~~l~~a~~   57 (258)
T d2i1qa2          36 VTEFAGVFGSGKTQIMHQSCVN   57 (258)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            3678899999999999999764

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.96  E-value=0.0073  Score=41.72  Aligned_cols=22  Identities=32%  Similarity=0.483  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      -|+|=|.-||||||+++.|...
T Consensus         4 ~IviEG~~GsGKST~~~~L~~~   25 (241)
T d2ocpa1           4 RLSIEGNIAVGKSTFVKLLTKT   25 (241)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            4778899999999999999864

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.95  E-value=0.0065  Score=45.44  Aligned_cols=18  Identities=28%  Similarity=0.495  Sum_probs=16.3

Q ss_pred             EEEcCCCCcHHHHHHHHH
Q 028986           37 VLLGDSGVGKSCIVLRFV   54 (200)
Q Consensus        37 ~i~G~~~sGKSsli~~l~   54 (200)
                      +|+|+.|+|||+++.++.
T Consensus        29 ~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          29 SIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             EEECSTTSSHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            588999999999999984

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=94.87  E-value=0.006  Score=41.10  Aligned_cols=23  Identities=30%  Similarity=0.401  Sum_probs=20.2

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHcC
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      -.+++.||+++|||.|+++|..-
T Consensus        54 n~i~~~GP~~TGKS~f~~sl~~~   76 (205)
T d1tuea_          54 NCLVFCGPANTGKSYFGMSFIHF   76 (205)
T ss_dssp             SEEEEESCGGGCHHHHHHHHHHH
T ss_pred             eEEEEECCCCccHHHHHHHHHHH
Confidence            36889999999999999998773

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=94.82  E-value=0.011  Score=43.26  Aligned_cols=25  Identities=28%  Similarity=0.282  Sum_probs=22.3

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHcC
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      ..++|.|=|.-|+||||+++.|...
T Consensus         5 ~~~rI~iEG~iGsGKSTl~~~L~~~   29 (333)
T d1p6xa_           5 TIVRIYLDGVYGIGKSTTGRVMASA   29 (333)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHSG
T ss_pred             ceEEEEEECCccCCHHHHHHHHHHH
Confidence            4678999999999999999999874

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=94.75  E-value=0.0067  Score=44.30  Aligned_cols=26  Identities=23%  Similarity=0.353  Sum_probs=23.0

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHcC
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      ...++|.|=|.-|+||||+++.|...
T Consensus         3 m~~lrI~IEG~iGsGKSTl~~~L~~~   28 (331)
T d1osna_           3 MGVLRIYLDGAYGIGKTTAAEEFLHH   28 (331)
T ss_dssp             EEEEEEEEEESSSSCTTHHHHHHHHT
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHH
Confidence            45678999999999999999999874

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=94.54  E-value=0.011  Score=40.43  Aligned_cols=20  Identities=30%  Similarity=0.644  Sum_probs=16.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHH
Q 028986           35 KLVLLGDSGVGKSCIVLRFV   54 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~   54 (200)
                      -++|.|++|+|||+|+..+.
T Consensus        28 ~~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          28 STLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH
Confidence            47788999999999987664

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=94.50  E-value=0.012  Score=40.66  Aligned_cols=21  Identities=19%  Similarity=0.145  Sum_probs=18.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHc
Q 028986           35 KLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~   55 (200)
                      -|+|.|..||||||+++.|..
T Consensus         3 iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            378999999999999999965

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=94.44  E-value=0.01  Score=43.19  Aligned_cols=24  Identities=21%  Similarity=0.357  Sum_probs=21.0

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHc
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~   55 (200)
                      .-++|.|=|.-|+||||+++.|..
T Consensus         3 ~~lrI~IEG~iGsGKTTl~~~La~   26 (329)
T d1e2ka_           3 TLLRVYIDGPHGMGKTTTTQLLVA   26 (329)
T ss_dssp             EEEEEEECSCTTSSHHHHHHHHTC
T ss_pred             CceEEEEECCcCCCHHHHHHHHHH
Confidence            346799999999999999999975

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=94.41  E-value=0.015  Score=42.16  Aligned_cols=21  Identities=29%  Similarity=0.599  Sum_probs=18.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHc
Q 028986           35 KLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~   55 (200)
                      .++++|++|+|||.+++.|..
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~   75 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAA   75 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHH
T ss_pred             EEEEECCCcchHHHHHHHHHH
Confidence            578889999999999998865

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=94.41  E-value=0.012  Score=41.43  Aligned_cols=20  Identities=30%  Similarity=0.439  Sum_probs=17.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHc
Q 028986           36 LVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        36 i~i~G~~~sGKSsli~~l~~   55 (200)
                      ++|.|+||+|||+|+..+..
T Consensus        38 ~vi~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          38 IMVTSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            67889999999999888764

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=94.41  E-value=0.011  Score=44.53  Aligned_cols=22  Identities=27%  Similarity=0.496  Sum_probs=19.1

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHc
Q 028986           34 VKLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        34 ~~i~i~G~~~sGKSsli~~l~~   55 (200)
                      -+++|+|.+|+|||+++..++.
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li~   72 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELAY   72 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHHH
T ss_pred             ceEEEEeCCCCcHHHHHHHHHH
Confidence            3699999999999999887764

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.35  E-value=0.012  Score=40.11  Aligned_cols=21  Identities=14%  Similarity=0.203  Sum_probs=18.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 028986           36 LVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        36 i~i~G~~~sGKSsli~~l~~~   56 (200)
                      |+|-|.-||||||+++.|...
T Consensus         6 I~iEG~DGsGKST~~~~L~~~   26 (214)
T d1tmka_           6 ILIEGLDRTGKTTQCNILYKK   26 (214)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            778899999999999988753

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=93.77  E-value=0.018  Score=40.38  Aligned_cols=20  Identities=30%  Similarity=0.489  Sum_probs=17.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHc
Q 028986           36 LVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        36 i~i~G~~~sGKSsli~~l~~   55 (200)
                      .+|.|++|+|||+|+..+..
T Consensus        32 ~~i~G~~G~GKS~l~l~la~   51 (274)
T d1nlfa_          32 GALVSPGGAGKSMLALQLAA   51 (274)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            56899999999999977753

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=93.65  E-value=0.013  Score=41.79  Aligned_cols=15  Identities=27%  Similarity=0.638  Sum_probs=13.1

Q ss_pred             EEEEcCCCCcHHHHH
Q 028986           36 LVLLGDSGVGKSCIV   50 (200)
Q Consensus        36 i~i~G~~~sGKSsli   50 (200)
                      ++|+|.+|+|||+.+
T Consensus        17 ~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEECCCTTSCHHHHH
T ss_pred             EEEEeeCCccHHHHH
Confidence            689999999999754

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.55  E-value=0.027  Score=34.49  Aligned_cols=25  Identities=12%  Similarity=0.186  Sum_probs=22.3

Q ss_pred             CceeeEEEEcCCCCcHHHHHHHHHc
Q 028986           31 NLRVKLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        31 ~~~~~i~i~G~~~sGKSsli~~l~~   55 (200)
                      ++-+.|.+.|..|+||++|.++|..
T Consensus         4 kqgf~i~~tg~~~~gk~~ia~al~~   28 (122)
T d1g8fa3           4 KQGFSIVLGNSLTVSREQLSIALLS   28 (122)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHH
T ss_pred             ccceEEEEeCCCCCCHHHHHHHHHH
Confidence            4568899999999999999999965

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=93.53  E-value=0.023  Score=40.46  Aligned_cols=21  Identities=10%  Similarity=0.322  Sum_probs=19.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHc
Q 028986           35 KLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~   55 (200)
                      |++|+|++|+|||+|+..+..
T Consensus        45 r~~I~g~~g~GKT~l~~~i~~   65 (289)
T d1xpua3          45 RGLIVAPPKAGKTMLLQNIAQ   65 (289)
T ss_dssp             EEEEEECSSSSHHHHHHHHHH
T ss_pred             eeeEeCCCCCCHHHHHHHHHH
Confidence            799999999999999988876

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=93.41  E-value=0.017  Score=41.43  Aligned_cols=15  Identities=27%  Similarity=0.727  Sum_probs=13.3

Q ss_pred             EEEEcCCCCcHHHHH
Q 028986           36 LVLLGDSGVGKSCIV   50 (200)
Q Consensus        36 i~i~G~~~sGKSsli   50 (200)
                      ++|.|.+||||||.+
T Consensus        27 ~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          27 LLIMAGAGSGKTRVL   41 (318)
T ss_dssp             EEEEECTTSCHHHHH
T ss_pred             EEEEecCCccHHHHH
Confidence            889999999999754

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=92.86  E-value=0.038  Score=38.89  Aligned_cols=24  Identities=25%  Similarity=0.356  Sum_probs=20.6

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHHcC
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      +--+.+.|++++|||+|++.+...
T Consensus       104 ~n~~~l~G~~~tGKS~f~~~i~~~  127 (267)
T d1u0ja_         104 RNTIWLFGPATTGKTNIAEAIAHT  127 (267)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cEEEEEEcCCCCCHHHHHHHHHHH
Confidence            446788899999999999999873

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=92.28  E-value=0.044  Score=40.34  Aligned_cols=19  Identities=32%  Similarity=0.539  Sum_probs=15.3

Q ss_pred             eEEEEcCCCCcHHHHHHHH
Q 028986           35 KLVLLGDSGVGKSCIVLRF   53 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l   53 (200)
                      -.+|.|++|+|||+++..+
T Consensus       165 ~~vI~G~pGTGKTt~i~~~  183 (359)
T d1w36d1         165 ISVISGGPGTGKTTTVAKL  183 (359)
T ss_dssp             EEEEECCTTSTHHHHHHHH
T ss_pred             eEEEEcCCCCCceehHHHH
Confidence            3677899999999987543

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=92.09  E-value=0.05  Score=38.20  Aligned_cols=21  Identities=19%  Similarity=0.483  Sum_probs=18.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 028986           36 LVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        36 i~i~G~~~sGKSsli~~l~~~   56 (200)
                      +.|.|++++|||+|+-.+...
T Consensus        57 tei~G~~gsGKTtl~l~~~~~   77 (263)
T d1u94a1          57 VEIYGPESSGKTTLTLQVIAA   77 (263)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEecCCCcHHHHHHHHHHHH
Confidence            668899999999999888763

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=91.90  E-value=0.05  Score=37.76  Aligned_cols=21  Identities=29%  Similarity=0.580  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHc
Q 028986           35 KLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~   55 (200)
                      -|+|.|++|+||+.+++.+-.
T Consensus        25 pvlI~Ge~GtGK~~~A~~ih~   45 (247)
T d1ny5a2          25 PVLITGESGVGKEVVARLIHK   45 (247)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEECCCCcCHHHHHHHHHH
Confidence            489999999999999998865

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=91.20  E-value=0.069  Score=36.75  Aligned_cols=20  Identities=25%  Similarity=0.268  Sum_probs=17.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHc
Q 028986           36 LVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        36 i~i~G~~~sGKSsli~~l~~   55 (200)
                      ++|.|+..+|||++++.+.-
T Consensus        44 ~iiTGpN~~GKSt~lk~i~l   63 (234)
T d1wb9a2          44 LIITGPNMGGKSTYMRQTAL   63 (234)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEeccCchhhHHHHHHHHH
Confidence            67889999999999998753

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.92  E-value=0.077  Score=37.39  Aligned_cols=22  Identities=32%  Similarity=0.798  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      |++|+|.+|+|||+|+..+..+
T Consensus        70 r~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          70 KIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEeeCCCCCCHHHHHHHHHHH
Confidence            7899999999999998888753

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=90.61  E-value=0.083  Score=36.06  Aligned_cols=20  Identities=20%  Similarity=0.298  Sum_probs=17.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHc
Q 028986           36 LVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        36 i~i~G~~~sGKSsli~~l~~   55 (200)
                      ++|.|+..+|||++++.+.-
T Consensus        38 ~iiTGpN~~GKSt~lk~i~l   57 (224)
T d1ewqa2          38 VLITGPNMAGKSTFLRQTAL   57 (224)
T ss_dssp             EEEESCSSSSHHHHHHHHHH
T ss_pred             EEEECCCccccchhhhhhHH
Confidence            67889999999999998754

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=89.73  E-value=1.3  Score=29.37  Aligned_cols=76  Identities=13%  Similarity=0.123  Sum_probs=47.2

Q ss_pred             EEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEE-EEEeCCCCCCCCcCCHHH
Q 028986           83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMA-LVGNKADLHEKREVPAQD  161 (200)
Q Consensus        83 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~i-iv~nK~D~~~~~~~~~~~  161 (200)
                      +.+.++|+++....  .....+..+|.++++...+ ..++.........+.+.   +.|++ +|+|+.+.... +...+.
T Consensus       112 ~d~IiiD~~~~~~~--~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~~~~---~~~~~giv~N~~~~~~~-~~~~~~  184 (237)
T d1g3qa_         112 FDFILIDCPAGLQL--DAMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLKKA---GLAILGFVLNRYGRSDR-DIPPEA  184 (237)
T ss_dssp             CSEEEEECCSSSSH--HHHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHHHT---TCEEEEEEEEEETSCTT-CCCHHH
T ss_pred             CCEEEEcccccccc--cchhhhhhhhccccccccc-ceecchhhHHHHHHhhh---hhhhhhhhhcccccccc-hhhhHH
Confidence            47888999875322  2233456699999999875 44566666666656543   55654 78899986433 344444


Q ss_pred             HHHH
Q 028986          162 GIEY  165 (200)
Q Consensus       162 ~~~~  165 (200)
                      .+++
T Consensus       185 ~~~~  188 (237)
T d1g3qa_         185 AEDV  188 (237)
T ss_dssp             HHHH
T ss_pred             HHhh
Confidence            4433

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=89.51  E-value=0.13  Score=34.31  Aligned_cols=24  Identities=8%  Similarity=0.106  Sum_probs=21.2

Q ss_pred             ceeeEEEEcCCCCcHHHHHHHHHc
Q 028986           32 LRVKLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        32 ~~~~i~i~G~~~sGKSsli~~l~~   55 (200)
                      ....+++.|++|+||++++..+.+
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~   37 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPE   37 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            455899999999999999998876

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=89.33  E-value=0.36  Score=31.39  Aligned_cols=102  Identities=10%  Similarity=0.113  Sum_probs=56.1

Q ss_pred             CCceeeEEEEcC-CCCcHHHHHHHHHcCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhh--------hh--
Q 028986           30 KNLRVKLVLLGD-SGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERY--------AA--   98 (200)
Q Consensus        30 ~~~~~~i~i~G~-~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~--------~~--   98 (200)
                      .++.+||+|+|. .+.|-+ |+..|..+.....                  ...+.+.++|.+.....        ..  
T Consensus        21 ~k~~~kV~I~GA~G~Ig~~-l~~~La~g~v~g~------------------~~~i~L~L~di~~~~~~l~g~~mdl~d~a   81 (175)
T d7mdha1          21 WKKLVNIAVSGAAGMISNH-LLFKLASGEVFGQ------------------DQPIALKLLGSERSFQALEGVAMELEDSL   81 (175)
T ss_dssp             CCCCEEEEEETTTSHHHHH-HHHHHHHTTTTCT------------------TCCEEEEEECCGGGHHHHHHHHHHHHTTT
T ss_pred             cCCCcEEEEECCCcHHHHH-HHHHHHcCcccCC------------------CceEEEEEecCccccchhcchhhhhcccc
Confidence            356789999997 667755 5556665432111                  11145666666652111        00  


Q ss_pred             -----------cccccccCccEEEEEEeCCCH--Hh----H----HHHHHHHHHHHHcCCCCCeEEEEEeCCC
Q 028986           99 -----------LAPLYYRGAAVAVVVYDITSP--DS----F----NKAQYWVKELQKHGSPDIVMALVGNKAD  150 (200)
Q Consensus        99 -----------~~~~~~~~~d~~i~v~d~~~~--~s----~----~~~~~~~~~i~~~~~~~~p~iiv~nK~D  150 (200)
                                 -....+.++|++|++-.....  .+    +    .-++.+...+.+.+.++.-+++|.|-.|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~NPvd  154 (175)
T d7mdha1          82 YPLLREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCN  154 (175)
T ss_dssp             CTTEEEEEEESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHH
T ss_pred             cccccCccccccchhhccCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecCcHH
Confidence                       012236778999998765521  11    1    1124444556666566677778778777

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=88.96  E-value=0.55  Score=29.63  Aligned_cols=49  Identities=20%  Similarity=0.197  Sum_probs=29.1

Q ss_pred             ccccCccEEEEEEeCCC-----H-Hh----HHHHHHHHHHHHHcCCCCCeEEEEEeCCC
Q 028986          102 LYYRGAAVAVVVYDITS-----P-DS----FNKAQYWVKELQKHGSPDIVMALVGNKAD  150 (200)
Q Consensus       102 ~~~~~~d~~i~v~d~~~-----~-~s----~~~~~~~~~~i~~~~~~~~p~iiv~nK~D  150 (200)
                      ..++++|++++......     + +-    ..-++.+...+.+.+.++.-++++.|.+|
T Consensus        76 ~~~~~advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsNPvD  134 (154)
T d1y7ta1          76 VAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPAN  134 (154)
T ss_dssp             HHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHH
T ss_pred             hhcccccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecCcHH
Confidence            34678999999876542     2 11    12234455556665555565666677776

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=88.62  E-value=0.15  Score=31.93  Aligned_cols=19  Identities=26%  Similarity=0.455  Sum_probs=14.6

Q ss_pred             EEEcCCCCcHHH-HHHHHHc
Q 028986           37 VLLGDSGVGKSC-IVLRFVR   55 (200)
Q Consensus        37 ~i~G~~~sGKSs-li~~l~~   55 (200)
                      +++||-.||||| |++++-+
T Consensus         6 ~i~GpMfsGKTteLi~~~~~   25 (139)
T d2b8ta1           6 FITGPMFAGKTAELIRRLHR   25 (139)
T ss_dssp             EEECSTTSCHHHHHHHHHHH
T ss_pred             EEEccccCHHHHHHHHHHHH
Confidence            468999999999 6665543

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=88.43  E-value=0.12  Score=33.91  Aligned_cols=21  Identities=19%  Similarity=0.310  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 028986           36 LVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        36 i~i~G~~~sGKSsli~~l~~~   56 (200)
                      |+|+|...||||.++..|...
T Consensus         2 iLVtGGarSGKS~~AE~l~~~   22 (180)
T d1c9ka_           2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCccHHHHHHHHHhc
Confidence            689999999999999998754

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=88.22  E-value=1.8  Score=26.73  Aligned_cols=21  Identities=29%  Similarity=0.389  Sum_probs=15.0

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHH
Q 028986           33 RVKLVLLGDSGVGKSCIVLRFV   54 (200)
Q Consensus        33 ~~~i~i~G~~~sGKSsli~~l~   54 (200)
                      .+.+ |+|+-.|||||-+-+..
T Consensus         8 ~l~l-I~GpMfSGKTteLi~~~   28 (141)
T d1xx6a1           8 WVEV-IVGPMYSGKSEELIRRI   28 (141)
T ss_dssp             EEEE-EECSTTSSHHHHHHHHH
T ss_pred             eEEE-EEeccccHHHHHHHHHH
Confidence            3444 58999999998665544

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=88.01  E-value=0.18  Score=31.00  Aligned_cols=21  Identities=29%  Similarity=0.161  Sum_probs=16.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHc
Q 028986           35 KLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~   55 (200)
                      ..+|.++.|+|||.++-.+..
T Consensus        10 ~~ll~apTGsGKT~~~~~~~~   30 (136)
T d1a1va1          10 VAHLHAPTGSGKSTKVPAAYA   30 (136)
T ss_dssp             EEEEECCTTSCTTTHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            356789999999998866554

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=87.94  E-value=0.16  Score=35.53  Aligned_cols=20  Identities=25%  Similarity=0.396  Sum_probs=17.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHc
Q 028986           36 LVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        36 i~i~G~~~sGKSsli~~l~~   55 (200)
                      +.|.|++++|||+|+..+..
T Consensus        60 tei~G~~~sGKT~l~l~~~~   79 (268)
T d1xp8a1          60 TEIYGPESGGKTTLALAIVA   79 (268)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEecCCccchHHHHHHHHH
Confidence            56889999999999988776

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=87.68  E-value=0.14  Score=36.24  Aligned_cols=21  Identities=24%  Similarity=0.539  Sum_probs=18.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHc
Q 028986           35 KLVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~   55 (200)
                      |++|+|.+|+|||+|+..+..
T Consensus        70 r~~If~~~g~GKt~ll~~~~~   90 (285)
T d2jdia3          70 RELIIGDRQTGKTSIAIDTII   90 (285)
T ss_dssp             BCEEEESTTSSHHHHHHHHHH
T ss_pred             EEEeecCCCCChHHHHHHHHH
Confidence            789999999999999877764

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=87.64  E-value=0.19  Score=35.27  Aligned_cols=20  Identities=25%  Similarity=0.473  Sum_probs=17.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHc
Q 028986           36 LVLLGDSGVGKSCIVLRFVR   55 (200)
Q Consensus        36 i~i~G~~~sGKSsli~~l~~   55 (200)
                      +.|.|++++|||+|+..+..
T Consensus        63 ~e~~G~~~~GKT~l~l~~~~   82 (269)
T d1mo6a1          63 IEIYGPESSGKTTVALHAVA   82 (269)
T ss_dssp             EEEECSSSSSHHHHHHHHHH
T ss_pred             EEEecCCCcHHHHHHHHHHH
Confidence            56889999999999877764

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=85.75  E-value=0.17  Score=36.10  Aligned_cols=14  Identities=43%  Similarity=0.748  Sum_probs=12.7

Q ss_pred             EEEcCCCCcHHHHH
Q 028986           37 VLLGDSGVGKSCIV   50 (200)
Q Consensus        37 ~i~G~~~sGKSsli   50 (200)
                      +++|.+|+|||||-
T Consensus        18 lfFGLSGTGKTTLs   31 (313)
T d2olra1          18 VFFGLSGTGKTTLS   31 (313)
T ss_dssp             EEECSTTSSHHHHH
T ss_pred             EEEccCCCCcccce
Confidence            69999999999974

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=85.70  E-value=0.22  Score=34.96  Aligned_cols=22  Identities=18%  Similarity=0.454  Sum_probs=18.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 028986           35 KLVLLGDSGVGKSCIVLRFVRG   56 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli~~l~~~   56 (200)
                      |++|+|.+|+|||+|+..+...
T Consensus        69 r~~Ifg~~g~GKt~l~~~~~~~   90 (276)
T d1fx0a3          69 RELIIGDRQTGKTAVATDTILN   90 (276)
T ss_dssp             BCBEEESSSSSHHHHHHHHHHT
T ss_pred             eEeeccCCCCChHHHHHHHHhh
Confidence            6899999999999998776554

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=84.83  E-value=0.19  Score=36.00  Aligned_cols=15  Identities=40%  Similarity=0.671  Sum_probs=13.2

Q ss_pred             EEEEcCCCCcHHHHH
Q 028986           36 LVLLGDSGVGKSCIV   50 (200)
Q Consensus        36 i~i~G~~~sGKSsli   50 (200)
                      -+++|.+|+|||||-
T Consensus        17 alffGLSGTGKTTLs   31 (318)
T d1j3ba1          17 AVFFGLSGTGKTTLS   31 (318)
T ss_dssp             EEEEECTTSCHHHHT
T ss_pred             EEEEccCCCCccccc
Confidence            488999999999974

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=84.28  E-value=0.32  Score=33.95  Aligned_cols=39  Identities=18%  Similarity=0.050  Sum_probs=24.7

Q ss_pred             cEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeE-EEEEeCCC
Q 028986          108 AVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVM-ALVGNKAD  150 (200)
Q Consensus       108 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~-iiv~nK~D  150 (200)
                      +.+++|... +..+.......+..+...   ++|+ -+|+||.-
T Consensus       199 t~~~lVt~p-e~~~~~~~~r~~~~l~~~---gi~~~~vVvN~v~  238 (296)
T d1ihua1         199 TRLVLVARL-QKSTLQEVARTHLELAAI---GLKNQYLVINGVL  238 (296)
T ss_dssp             EEEEEEEES-CHHHHHHHHHHHHHHHHH---TCCCEEEEEEEEC
T ss_pred             ceeeEecCc-chhHHHHHHHHHHHHHhc---CCCceEEEEcCCc
Confidence            355666554 455677777777777765   3443 46779963

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=84.15  E-value=0.23  Score=35.60  Aligned_cols=15  Identities=40%  Similarity=0.669  Sum_probs=13.2

Q ss_pred             EEEEcCCCCcHHHHH
Q 028986           36 LVLLGDSGVGKSCIV   50 (200)
Q Consensus        36 i~i~G~~~sGKSsli   50 (200)
                      -+++|.+|+|||||-
T Consensus        17 alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          17 TVFFGLSGTGKTTLS   31 (323)
T ss_dssp             EEEECCTTSSHHHHH
T ss_pred             EEEEccCCCCcccce
Confidence            369999999999985

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=84.12  E-value=0.36  Score=31.91  Aligned_cols=63  Identities=11%  Similarity=-0.047  Sum_probs=33.0

Q ss_pred             cEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEE
Q 028986          108 AVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIE  175 (200)
Q Consensus       108 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  175 (200)
                      +.+++|.+........ .......+.+.  .....-+|+|+.|....  ...+....+.+.++++++-
T Consensus       139 ~~v~~V~~~~~~~~~~-~~~~~~~~~~~--~~~~~gvv~N~~~~~~~--~~~~~~~~l~~~~gi~vlG  201 (224)
T d1byia_         139 LPVILVVGVKLGCINH-AMLTAQVIQHA--GLTLAGWVANDVTPPGK--RHAEYMTTLTRMIPAPLLG  201 (224)
T ss_dssp             CCEEEEEECSTTHHHH-HHHHHHHHHHT--TCCEEEEEEECCSSCCT--THHHHHHHHHHHSSSCEEE
T ss_pred             ceeeEEEeeccchhHH-HHHHHHHHhcc--CCccEEEEEeCcCCCch--HHHHHHHHHHHHhCCCEEE
Confidence            4555666655543332 22333334333  23345778899885432  2244455566667887653

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=83.60  E-value=0.36  Score=33.77  Aligned_cols=88  Identities=19%  Similarity=0.152  Sum_probs=45.1

Q ss_pred             EEEEEEeCCChhhhhhcccc-cccCccEEEEEEeCCCHHhHHHHHHHHHHHHHc-CCCCCeE-EEEEeCCCCCCCCcCCH
Q 028986           83 VKFEIWDTAGQERYAALAPL-YYRGAAVAVVVYDITSPDSFNKAQYWVKELQKH-GSPDIVM-ALVGNKADLHEKREVPA  159 (200)
Q Consensus        83 ~~~~l~D~~g~~~~~~~~~~-~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~-iiv~nK~D~~~~~~~~~  159 (200)
                      +.+.++|+|+.......... ....+|.++++... +..++..+...+..+... ...+.++ .+|.|+.+...    ..
T Consensus       119 ~D~iiiD~pp~~~~~~~~~~~~~~~a~~vlv~~~~-~~~s~~~~~~~~~~i~~~~~~~~~~~~gvv~n~~~~~~----~~  193 (289)
T d2afhe1         119 LDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSG-EMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNTDR----ED  193 (289)
T ss_dssp             CSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECS-SHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCTT----HH
T ss_pred             CCeEeeccCCccCHHHHHHHHHhhccceeecccch-hHHHHHHHHHHHHHHHhhhhcccccccceeehhhcchh----hH
Confidence            46678887764211111111 12346666666544 344455555555554432 2334444 37789876422    23


Q ss_pred             HHHHHHHHHcCCeEEE
Q 028986          160 QDGIEYAEKNGMFFIE  175 (200)
Q Consensus       160 ~~~~~~~~~~~~~~~~  175 (200)
                      +...++++.++.+++.
T Consensus       194 ~~~~~~~~~~g~~vl~  209 (289)
T d2afhe1         194 ELIIALANKLGTQMIH  209 (289)
T ss_dssp             HHHHHHHHHHTSCEEE
T ss_pred             HHHHHHHHHcCCeEEE
Confidence            3456666777776654

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=82.72  E-value=0.47  Score=30.98  Aligned_cols=16  Identities=25%  Similarity=0.509  Sum_probs=13.3

Q ss_pred             eEEEEcCCCCcHHHHH
Q 028986           35 KLVLLGDSGVGKSCIV   50 (200)
Q Consensus        35 ~i~i~G~~~sGKSsli   50 (200)
                      ++++.+++|+|||...
T Consensus        25 n~lv~~pTGsGKT~i~   40 (200)
T d1wp9a1          25 NCLIVLPTGLGKTLIA   40 (200)
T ss_dssp             CEEEECCTTSCHHHHH
T ss_pred             CeEEEeCCCCcHHHHH
Confidence            5789999999999643

>d1eg7a_ c.37.1.10 (A:) Formyltetrahydrofolate synthetase {Moorella thermoacetica [TaxId: 1525]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Formyltetrahydrofolate synthetase
species: Moorella thermoacetica [TaxId: 1525]

Probab=82.70  E-value=0.71  Score=35.24  Aligned_cols=60  Identities=17%  Similarity=0.040  Sum_probs=43.0

Q ss_pred             CCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHhhcc
Q 028986          136 GSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLITCTSS  197 (200)
Q Consensus       136 ~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~~~~  197 (200)
                      ...++|+|+.+|+..-..+.+  .+.++++|.+.++.+...-++.|.|-.++-+.+++.+.+
T Consensus       365 ~~fGlpvVVAIN~F~tDTd~E--i~~i~~~~~~~g~~~a~~wa~GG~Ga~dLA~~Vv~a~e~  424 (549)
T d1eg7a_         365 GKFGVPAVVAINAFPTDTEAE--LNLLYELCAKAGAEVALSWAKGGEGGLELARKVLQTLES  424 (549)
T ss_dssp             HTTTCCEEEEEECCTTCCHHH--HHHHHHHTTTSEEEEECCTTTGGGGGHHHHHHHHHHHHH
T ss_pred             hhcCCCeEEEeccCCccchhH--HHHHHHHHhhcCcceeeecccCccchHHHHHHHHHHHhc
Confidence            356999999999988544333  345566676777665555567788888998888887754

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=82.41  E-value=0.43  Score=33.06  Aligned_cols=41  Identities=12%  Similarity=0.055  Sum_probs=23.1

Q ss_pred             ccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCC
Q 028986          107 AAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKAD  150 (200)
Q Consensus       107 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D  150 (200)
                      .+.++++..+ +..+...+..++..+.....+-  .-+|.|+.-
T Consensus       183 ~~~~vlV~~p-~~~~~~~~~r~~~~l~~~~~~~--~~iV~N~~~  223 (279)
T d1ihua2         183 RTKVLLVTLP-ETTPVLEAANLQADLERAGIHP--WGWIINNSL  223 (279)
T ss_dssp             TEEEEEEECS-SHHHHHHHHHHHHHHHHTTCCC--CEEEEEEES
T ss_pred             cccceEeccc-cHhHHHHHHHHHHHHHhcCCCc--cEEEEcCCc
Confidence            3556666554 4555666676777666553222  234568754

>d1vmea1 c.23.5.1 (A:251-398) ROO-like flavoprotein TM0755, C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: ROO-like flavoprotein TM0755, C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=82.24  E-value=3.8  Score=25.06  Aligned_cols=89  Identities=8%  Similarity=0.048  Sum_probs=54.7

Q ss_pred             cccCccEEEEEEeCCCHHhHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCeEEE-ecCC--
Q 028986          103 YYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIE-TSAK--  179 (200)
Q Consensus       103 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-~S~~--  179 (200)
                      -+..+|++++........-...+..++..+......+.++.++++--.-..    ....+.+.+...++.++. +..+  
T Consensus        54 ~l~~~d~iiigspt~~~~~~~~~~~~l~~~~~~~~~~k~~~~fgs~g~~~~----a~~~~~~~l~~~G~~~v~~~~~~~~  129 (148)
T d1vmea1          54 DIPDSEALIFGVSTYEAEIHPLMRFTLLEIIDKANYEKPVLVFGVHGWAPS----AERTAGELLKETKFRILSFTEIKGS  129 (148)
T ss_dssp             HSTTCSEEEEEECEETTEECHHHHHHHHHHHHHCCCCCEEEEEEECCCCCC----C-CCHHHHHHTSSCEEEEEEEECST
T ss_pred             hHHHCCEeEEEecccCCccCchHHHHHHHHhhcccCCCEEEEEEcCCCccc----hHHHHHHHHHHcCCcEEeeEEEeCC
Confidence            366789998887766554455667777777766667888888887533211    223456667777876543 2222  


Q ss_pred             --CCCCHHHHHHHHHHhh
Q 028986          180 --TADNINQLFEVLITCT  195 (200)
Q Consensus       180 --~~~~i~~~~~~i~~~~  195 (200)
                        +...++++.+++.+.+
T Consensus       130 ~~de~~~~e~~~~~~k~l  147 (148)
T d1vmea1         130 NMDERKIEEAISLLKKEL  147 (148)
T ss_dssp             TCCTHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhc
Confidence              2234667777766655

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=81.77  E-value=0.74  Score=29.00  Aligned_cols=24  Identities=13%  Similarity=0.282  Sum_probs=17.4

Q ss_pred             ceeeEEEEcC-CCCcHHHHHHHHHcC
Q 028986           32 LRVKLVLLGD-SGVGKSCIVLRFVRG   56 (200)
Q Consensus        32 ~~~~i~i~G~-~~sGKSsli~~l~~~   56 (200)
                      .++||.|+|. .++|.+... .|..+
T Consensus         2 ~p~KV~IiGA~G~VG~~la~-~l~~~   26 (154)
T d5mdha1           2 EPIRVLVTGAAGQIAYSLLY-SIGNG   26 (154)
T ss_dssp             CCEEEEESSTTSHHHHTTHH-HHHTT
T ss_pred             CceEEEEECCCCHHHHHHHH-HHHHH
Confidence            4679999995 788987554 45553