Citrus Sinensis ID: 028990

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200

MGTPVTAPWKQLLLQALESQSHLKHSIYFQLATVGTNGRPSNRTVVFRGFQDNTDKIQINSDTRSRKIEELKSCPFSEICWYFTESWDQFRINGRVDVIDGSNSDPEKLQIREKSWFGCSMKARLQYLDPEQGCPSVNEQPKEFSLDPCAGPVDAFCVLILDPDQVDYLNLKSNQKLKFMSRLSDNGEKYWASLKTSPEC

ccccccHHHHHHHHHHHHHccccccccEEEEEcccccccccEEEEEEEEEEcccccEEEEEcccccHHHHHHHcccEEEEEEEccccEEEEEEEEEEEEccccccHHHHHHHHHHHHcccHHHHcccccccccccccccccccccccccccccccEEEEEEEEEEEEEEEcccccccEEEEEEccccccccEEEEEEccc

ccccccccHHHHHHHHHHHccccccccEEEEEEEcccccccEEEEEEEcccccccEEEEEEccccHHHHHHHccccEEEEEEcccccEEEEEEEEEEEEccccccHHHHHHHHHHHHHccHHHHHHHcccccccccccccHccccccccccccccEEEEEEEccEEEEEEcccccccEEEEEEcccccccEEEEEEcccc

MGTPVTAPWKQLLLQALESQSHLKHSIYFQLatvgtngrpsnrtvvfrgfqdntdkiqinsDTRSRKIeelkscpfseicwYFTESWdqfringrvdvidgsnsdpeklQIREKSWFGCSMKARLqyldpeqgcpsvneqpkefsldpcagpvdaFCVLildpdqvdylnlkSNQKLKFMSRLSDNGEKYWASLKTSPEC

MGTPVTAPWKQLLLQALESQSHLKHSIYFQLatvgtngrpsnRTVVfrgfqdntdkiqinsdtrsrkieelkscPFSEICWYFTESWDQFRINGRVDvidgsnsdpeklQIREKSWFGCSMKARLQYLDPEQGCPSVNEQPKEFSLDPCAGPVDAFCVLILDPDQVDYLNLKSNQKLKFmsrlsdngekywaslktspec

*******PWKQLLLQALESQSHLKHSIYFQLATVGTNGRPSNRTVVFRGFQDNTDKIQI********IEELKSCPFSEICWYFTESWDQFRINGRVDVIDG********QIREKSWFGCSMKARLQYLD**************FSLDPCAGPVDAFCVLILDPDQVDYLNLKSNQKLKF*********************

***PVTAPWKQLLLQALESQSHLKHSIYFQLATVGTNGRPSNRTVVFRGFQDNTDKIQINSDTRSRKIEELKSCPFSEICWYFTESWDQFRINGRVDVIDGSNSDPEK*****************************************AGPVDAFCVLILDPDQVDYLNLKSNQKLKFMSRLSDNGEKYWASLKTSPEC

*****TAPWKQLLLQALESQSHLKHSIYFQLATVGTNGRPSNRTVVFRGFQDNTDKIQINSDTRSRKIEELKSCPFSEICWYFTESWDQFRINGRVDVIDGSNSDPEKLQIREKSWFGCSMKARLQYLDPEQ***************PCAGPVDAFCVLILDPDQVDYLNLKSNQKLKFMSRLSDNGEKYWASLKTSPEC

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		200	2.2.26 [Sep-21-2011]
Q9ZPY1		198	Pyridoxine/pyridoxamine 5	yes	no	0.985	0.994	0.618	3e-69
P53210		297	Uncharacterized protein Y	yes	no	0.455	0.306	0.351	5e-08
Q1DCS1		206	Pyridoxine/pyridoxamine 5	yes	no	0.365	0.354	0.333	3e-06
P21159		220	Pyridoxine/pyridoxamine 5	yes	no	0.365	0.331	0.333	3e-06
A2SJZ5		213	Pyridoxine/pyridoxamine 5	yes	no	0.46	0.431	0.343	6e-06
Q0BCF1		214	Pyridoxine/pyridoxamine 5	yes	no	0.365	0.341	0.373	7e-06
B1YVG1		214	Pyridoxine/pyridoxamine 5	yes	no	0.365	0.341	0.373	7e-06
A9AGI1		214	Pyridoxine/pyridoxamine 5	yes	no	0.365	0.341	0.373	8e-06
B1XYE2		211	Pyridoxine/pyridoxamine 5	yes	no	0.365	0.345	0.333	5e-05
Q39DH2		214	Pyridoxine/pyridoxamine 5	no	no	0.365	0.341	0.36	9e-05

>sp\|Q9ZPY1\|PPOX2_ARATH Pyridoxine/pyridoxamine 5'-phosphate oxidase 2 OS=Arabidopsis thaliana GN=PPOX2 PE=1 SV=2	Back alignment and function desciption

 Score =  261 bits (666), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 123/199 (61%), Positives = 157/199 (78%), Gaps = 2/199 (1%)

Query: 1   MGTPVTAPWKQLLLQALESQSHLKHSIYFQLATVGTNGRPSNRTVVFRGFQDNTDKIQIN 60
           MGT V APWKQLL  A+E+ SHL HS Y QLAT+G NGRPSNRTVVFRGF++N+D+IQIN
Sbjct: 1   MGTHV-APWKQLLFGAIEANSHLSHSSYVQLATIGLNGRPSNRTVVFRGFEENSDRIQIN 59

Query: 61  SDTRSRKIEELKSCPFSEICWYFTESWDQFRINGRVDVIDGSNSDPEKLQIREKSWFGCS 120
           +D RSRKIEELK CPFSE+CWYF+++W+QFRINGR++VID SN D  KLQ REK+WF  S
Sbjct: 60  TDLRSRKIEELKHCPFSEMCWYFSDTWEQFRINGRIEVIDASNPDQTKLQQREKAWFANS 119

Query: 121 MKARLQYLDPEQGCPSVNEQ-PKEFSLDPCAGPVDAFCVLILDPDQVDYLNLKSNQKLKF 179
           +++RL Y+ P  G P  +EQ  ++  LDP +GPV  +C+L+L+P++VDYLNLK+NQ+L F
Sbjct: 120 LRSRLIYVCPTPGSPCNSEQSSQQVKLDPSSGPVPEYCLLLLEPEKVDYLNLKTNQRLFF 179

Query: 180 MSRLSDNGEKYWASLKTSP 198
            S  +  GEK W S K +P
Sbjct: 180 SSMATGTGEKCWTSEKVNP 198

Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP). Has an in vitro catalytic efficiency for PNP approximately 300-fold lower than that of PPOX1.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 4EC: .EC: 3EC: .EC: 5

>sp\|P53210\|YG1B_YEAST Uncharacterized protein YGR017W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YGR017W PE=1 SV=1	Back alignment and function description

>sp\|Q1DCS1\|PDXH_MYXXD Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Myxococcus xanthus (strain DK 1622) GN=pdxH PE=3 SV=2	Back alignment and function description

>sp\|P21159\|PDXH_MYXXA Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Myxococcus xanthus GN=pdxH PE=1 SV=2	Back alignment and function description

>sp\|A2SJZ5\|PDXH_METPP Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Methylibium petroleiphilum (strain PM1) GN=pdxH PE=3 SV=2	Back alignment and function description

>sp\|Q0BCF1\|PDXH_BURCM Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=pdxH PE=3 SV=1	Back alignment and function description

>sp\|B1YVG1\|PDXH_BURA4 Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Burkholderia ambifaria (strain MC40-6) GN=pdxH PE=3 SV=1	Back alignment and function description

>sp\|A9AGI1\|PDXH_BURM1 Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=pdxH PE=3 SV=1	Back alignment and function description

>sp\|B1XYE2\|PDXH_LEPCP Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=pdxH PE=3 SV=1	Back alignment and function description

>sp\|Q39DH2\|PDXH_BURS3 Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Burkholderia sp. (strain 383) GN=pdxH PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		200
224068008		199	predicted protein [Populus trichocarpa]	0.99	0.994	0.653	1e-72
224130576		197	predicted protein [Populus trichocarpa]	0.975	0.989	0.69	2e-72
225470948		197	PREDICTED: pyridoxine/pyridoxamine 5'-ph	0.98	0.994	0.688	4e-72
388496120		196	unknown [Medicago truncatula]	0.95	0.969	0.680	1e-71
356560059		196	PREDICTED: uncharacterized protein LOC10	0.95	0.969	0.680	2e-70
195649895		205	hypothetical protein [Zea mays]	0.985	0.960	0.611	6e-70
297828389		198	hypothetical protein ARALYDRAFT_483819 [	0.985	0.994	0.638	2e-69
414864362		205	TPA: hypothetical protein ZEAMMB73_33119	0.985	0.960	0.606	3e-69
226492332		205	uncharacterized protein LOC100277985 [Ze	0.985	0.960	0.601	1e-68
242042505		204	hypothetical protein SORBIDRAFT_01g04956	0.95	0.931	0.635	2e-68

>gi\|224068008\|ref\|XP_002302643.1\| predicted protein [Populus trichocarpa] gi\|222844369\|gb\|EEE81916.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  277 bits (709), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 130/199 (65%), Positives = 158/199 (79%), Gaps = 1/199 (0%)

Query: 1   MGTPVTAPWKQLLLQALESQSHLKHSIYFQLATVGTNGRPSNRTVVFRGFQDNTDKIQIN 60
           MGT   +PWKQLLL A+ES SHLKHS + Q AT+G+NGRPSNR+VVFRGF++N+D+IQIN
Sbjct: 1   MGTVTPSPWKQLLLSAIESNSHLKHSYFVQFATIGSNGRPSNRSVVFRGFEENSDRIQIN 60

Query: 61  SDTRSRKIEELKSCPFSEICWYFTESWDQFRINGRVDVIDGSNSDPEKLQIREKSWFGCS 120
           +D R+RKIEEL  CPF+EICWYFT+SW+QFRINGRVDVIDGSN +P KLQ REK WF  +
Sbjct: 61  TDFRTRKIEELNHCPFAEICWYFTDSWEQFRINGRVDVIDGSNPNPAKLQQREKLWFASA 120

Query: 121 MKARLQYLDPEQGCPSVNEQ-PKEFSLDPCAGPVDAFCVLILDPDQVDYLNLKSNQKLKF 179
           +K+RLQYL P  G P ++EQ P EF LDP +GPV  FC+L+L+PDQVDYLNLKSNQ++  
Sbjct: 121 IKSRLQYLGPNPGLPCLSEQSPDEFFLDPSSGPVATFCLLVLEPDQVDYLNLKSNQRIVS 180

Query: 180 MSRLSDNGEKYWASLKTSP 198
               S NGE  W S   +P
Sbjct: 181 TLSRSANGEMCWNSEMINP 199

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224130576\|ref\|XP_002320875.1\| predicted protein [Populus trichocarpa] gi\|222861648\|gb\|EEE99190.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|225470948\|ref\|XP_002265908.1\| PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase [Vitis vinifera] gi\|297745497\|emb\|CBI40577.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|388496120\|gb\|AFK36126.1\| unknown [Medicago truncatula]	Back alignment and taxonomy information

>gi\|356560059\|ref\|XP_003548313.1\| PREDICTED: uncharacterized protein LOC100779815 [Glycine max]	Back alignment and taxonomy information

>gi\|195649895\|gb\|ACG44415.1\| hypothetical protein [Zea mays]	Back alignment and taxonomy information

>gi\|297828389\|ref\|XP_002882077.1\| hypothetical protein ARALYDRAFT_483819 [Arabidopsis lyrata subsp. lyrata] gi\|297327916\|gb\|EFH58336.1\| hypothetical protein ARALYDRAFT_483819 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|414864362\|tpg\|DAA42919.1\| TPA: hypothetical protein ZEAMMB73_331194 [Zea mays]	Back alignment and taxonomy information

>gi\|226492332\|ref\|NP_001144884.1\| uncharacterized protein LOC100277985 [Zea mays] gi\|195648396\|gb\|ACG43666.1\| hypothetical protein [Zea mays]	Back alignment and taxonomy information

>gi\|242042505\|ref\|XP_002468647.1\| hypothetical protein SORBIDRAFT_01g049560 [Sorghum bicolor] gi\|241922501\|gb\|EER95645.1\| hypothetical protein SORBIDRAFT_01g049560 [Sorghum bicolor]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		200
TAIR\|locus:2039949		198	AT2G46580 [Arabidopsis thalian	0.985	0.994	0.618	9.4e-66
CGD\|CAL0002553		228	orf19.5136 [Candida albicans (	0.505	0.442	0.342	5.3e-08
SGD\|S000003249		297	YGR017W "Putative protein of u	0.445	0.299	0.295	7.6e-05
UNIPROTKB\|J3QQV6		120	PNPO "Pyridoxine-5'-phosphate	0.32	0.533	0.348	0.00038

TAIR\|locus:2039949 AT2G46580 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 669 (240.6 bits), Expect = 9.4e-66, P = 9.4e-66
 Identities = 123/199 (61%), Positives = 157/199 (78%)

Query:     1 MGTPVTAPWKQLLLQALESQSHLKHSIYFQLATVGTNGRPSNRTVVFRGFQDNTDKIQIN 60
             MGT V APWKQLL  A+E+ SHL HS Y QLAT+G NGRPSNRTVVFRGF++N+D+IQIN
Sbjct:     1 MGTHV-APWKQLLFGAIEANSHLSHSSYVQLATIGLNGRPSNRTVVFRGFEENSDRIQIN 59

Query:    61 SDTRSRKIEELKSCPFSEICWYFTESWDQFRINGRVDVIDGSNSDPEKLQIREKSWFGCS 120
             +D RSRKIEELK CPFSE+CWYF+++W+QFRINGR++VID SN D  KLQ REK+WF  S
Sbjct:    60 TDLRSRKIEELKHCPFSEMCWYFSDTWEQFRINGRIEVIDASNPDQTKLQQREKAWFANS 119

Query:   121 MKARLQYLDPEQGCPSVNEQP-KEFSLDPCAGPVDAFCVLILDPDQVDYLNLKSNQKLKF 179
             +++RL Y+ P  G P  +EQ  ++  LDP +GPV  +C+L+L+P++VDYLNLK+NQ+L F
Sbjct:   120 LRSRLIYVCPTPGSPCNSEQSSQQVKLDPSSGPVPEYCLLLLEPEKVDYLNLKTNQRLFF 179

Query:   180 MSRLSDNGEKYWASLKTSP 198
              S  +  GEK W S K +P
Sbjct:   180 SSMATGTGEKCWTSEKVNP 198

GO:0004733 "pyridoxamine-phosphate oxidase activity" evidence=IEA

GO:0008615 "pyridoxine biosynthetic process" evidence=IEA

GO:0010181 "FMN binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

CGD\|CAL0002553 orf19.5136 [Candida albicans (taxid:5476)]	Back alignment and assigned GO terms

SGD\|S000003249 YGR017W "Putative protein of unknown function" [Saccharomyces cerevisiae (taxid:4932)]	Back alignment and assigned GO terms

UNIPROTKB\|J3QQV6 PNPO "Pyridoxine-5'-phosphate oxidase" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9ZPY1	PPOX2_ARATH	1, ., 4, ., 3, ., 5	0.6180	0.985	0.9949	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		200
TIGR04026		185	TIGR04026, PPOX_FMN_cyano, PPOX class probable FMN	2e-49
pfam12766		98	pfam12766, Pyridox_oxase_2, Pyridoxamine 5'-phosph	4e-44
COG5135		245	COG5135, COG5135, Uncharacterized conserved protei	2e-25
pfam01243		88	pfam01243, Pyridox_oxidase, Pyridoxamine 5'-phosph	1e-08
COG0259		214	COG0259, PdxH, Pyridoxamine-phosphate oxidase [Coe	1e-06
TIGR00558		190	TIGR00558, pdxH, pyridoxamine-phosphate oxidase	1e-05
PLN03049		462	PLN03049, PLN03049, pyridoxine (pyridoxamine) 5'-p	7e-04
PRK05679		195	PRK05679, PRK05679, pyridoxamine 5'-phosphate oxid	0.003

>gnl\|CDD\|188541 TIGR04026, PPOX_FMN_cyano, PPOX class probable FMN-dependent enzyme, alr4036 family	Back alignment and domain information

 Score =  158 bits (401), Expect = 2e-49
 Identities = 70/181 (38%), Positives = 107/181 (59%), Gaps = 5/181 (2%)

Query: 7   APWKQLLLQALESQSHLKHSIYFQLATVGTNGRPSNRTVVFRGFQDNTDKIQINSDTRSR 66
            PW+QLL +AL  +  L  S Y QLATV ++G P NRTVVFRG+ D ++++++ +D RS 
Sbjct: 2   PPWRQLLKRALHRERSLPSSRYLQLATVTSDGTPRNRTVVFRGWGD-SNQLELFTDARSE 60

Query: 67  KIEELKSCPFSEICWYFTESWDQFRINGRVDVIDGSNSDPEKLQIREKSWFGCSMKARLQ 126
           KIE+L   P +EICWYF ++ +QFR+ G++ ++  ++ DPE+LQ     W   S  AR Q
Sbjct: 61  KIEQLAQNPNAEICWYFPKTREQFRLRGKLTLVT-ADDDPERLQAH---WQQLSDAARSQ 116

Query: 127 YLDPEQGCPSVNEQPKEFSLDPCAGPVDAFCVLILDPDQVDYLNLKSNQKLKFMSRLSDN 186
           +  P  G P          L   A P + F +L+L+P  VD+L L+ +   + +    +N
Sbjct: 117 WFWPHPGQPLNPTAAFPEELPDNAPPPENFVLLLLEPQSVDHLELRGHPHNRRLWERDEN 176

Query: 187 G 187
           G
Sbjct: 177 G 177

Members of the PPOX family (see pfam01243) may contain either FMN or F420 as cofactor. This subfamily described here is widespread in Cyanobacteria and plants, and is named for alr4036 from Nostoc sp. PCC 7120. The family consists mostly of proteins from species that lack the capability to synthesize F420, so it is probable that all members bind FMN rather than F420 [Unknown function, Enzymes of unknown specificity]. Length = 185

>gnl\|CDD\|221760 pfam12766, Pyridox_oxase_2, Pyridoxamine 5'-phosphate oxidase	Back alignment and domain information

>gnl\|CDD\|227464 COG5135, COG5135, Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>gnl\|CDD\|216385 pfam01243, Pyridox_oxidase, Pyridoxamine 5'-phosphate oxidase	Back alignment and domain information

>gnl\|CDD\|223337 COG0259, PdxH, Pyridoxamine-phosphate oxidase [Coenzyme metabolism]	Back alignment and domain information

>gnl\|CDD\|211586 TIGR00558, pdxH, pyridoxamine-phosphate oxidase	Back alignment and domain information

>gnl\|CDD\|215550 PLN03049, PLN03049, pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional	Back alignment and domain information

>gnl\|CDD\|235555 PRK05679, PRK05679, pyridoxamine 5'-phosphate oxidase; Provisional	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		200
COG0259		214	PdxH Pyridoxamine-phosphate oxidase [Coenzyme meta	100.0
PRK05679		195	pyridoxamine 5'-phosphate oxidase; Provisional	100.0
TIGR00558		217	pdxH pyridoxamine-phosphate oxidase. This model is	100.0
PLN03049		462	pyridoxine (pyridoxamine) 5'-phosphate oxidase; Pr	100.0
PLN02918		544	pyridoxine (pyridoxamine) 5'-phosphate oxidase	100.0
KOG2586		228	consensus Pyridoxamine-phosphate oxidase [Coenzyme	100.0
COG5135		245	Uncharacterized conserved protein [Function unknow	99.95
PF12766		100	Pyridox_oxase_2: Pyridoxamine 5'-phosphate oxidase	99.93
KOG4558		251	consensus Uncharacterized conserved protein [Funct	99.89
COG3871		145	Uncharacterized stress protein (general stress pro	99.84
TIGR03618		117	Rv1155_F420 PPOX class probable F420-dependent enz	99.72
PF01243		89	Pyridox_oxidase: Pyridoxamine 5'-phosphate oxidase	99.71
TIGR03667		130	Rv3369 PPOX class probable F420-dependent enzyme,	99.7
TIGR03666		132	Rv2061_F420 PPOX class probable F420-dependent enz	99.42
TIGR03668		141	Rv0121_F420 PPOX class probable F420-dependent enz	99.19
COG5015		132	Uncharacterized conserved protein [Function unknow	99.12
PF10590		42	PNPOx_C: Pyridoxine 5'-phosphate oxidase C-termina	99.09
PRK06733		151	hypothetical protein; Provisional	99.06
PRK03467		144	hypothetical protein; Provisional	98.91
PF12900		143	Pyridox_ox_2: Pyridoxamine 5'-phosphate oxidase; I	98.27
COG3467		166	Predicted flavin-nucleotide-binding protein [Gener	98.19
PF13883		170	Pyrid_oxidase_2: Pyridoxamine 5'-phosphate oxidase	98.08
TIGR00026		113	hi_GC_TIGR00026 deazaflavin-dependent nitroreducta	96.87
COG3576		173	Predicted flavin-nucleotide-binding protein struct	96.82
COG3787		145	Uncharacterized protein conserved in bacteria [Fun	96.47
PF04075		132	DUF385: Domain of unknown function (DUF385) ; Inte	92.73
KOG3374		210	consensus Cellular repressor of transcription [Tra	91.25
PF04289		177	DUF447: Protein of unknown function (DUF447); Inte	88.45

>COG0259 PdxH Pyridoxamine-phosphate oxidase [Coenzyme metabolism]	Back alignment and domain information

Probab=100.00  E-value=2.7e-40  Score=260.59  Aligned_cols=172  Identities=20%  Similarity=0.335  Sum_probs=148.1

Q ss_pred             ChhHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCceEEEEEEEEEeCCCCEEEEEecCCCcchhhhhcCCcEEEEEEECC
Q 028990            6 TAPWKQLLLQALESQSHLKHSIYFQLATVGTNGRPSNRTVVFRGFQDNTDKIQINSDTRSRKIEELKSCPFSEICWYFTE   85 (200)
Q Consensus         6 ~~~w~~~l~~~~~~~~~~~~~~~~~LATv~~dG~P~~R~v~~r~~~~~~~~l~F~Td~~S~K~~~i~~np~v~l~~~~~~   85 (200)
                      ...+..||++|...  .+.+|+.|+|||||++|.|++|+|+++++++.  +|+||||..|+|.++|.+||+++++|+|..
T Consensus        28 ~~lF~~Wl~eA~~~--~~~ePnAm~lATvd~~G~P~~R~VLLK~~Der--GfvFyTN~~S~Kg~eLa~np~Aal~F~W~~  103 (214)
T COG0259          28 LTLFRRWLEEAIRA--EVNEPNAMTLATVDEQGRPSSRIVLLKELDER--GFVFYTNYGSRKGRELAANPYAALLFPWKE  103 (214)
T ss_pred             HHHHHHHHHHHHhc--ccCCCceeEEEeecCCCCceeeEEEecccCCC--cEEEEeccCCcchhhHhhCcceeEEecchh
Confidence            35788888888876  47899999999999999999999999999886  999999999999999999999999999999


Q ss_pred             CceEEEEEEEEEEEcCCCCChhh----hhhhhhhhhcCCHhHHhcccCCCCCCcCCCCCC--------CccCCCCCCCCC
Q 028990           86 SWDQFRINGRVDVIDGSNSDPEK----LQIREKSWFGCSMKARLQYLDPEQGCPSVNEQP--------KEFSLDPCAGPV  153 (200)
Q Consensus        86 ~~~qiri~G~a~~~~~~~~~~~~----~~~~~~~W~~~~~~~r~~~~~~~pg~~~~~~~~--------~~~~~~~~~~~~  153 (200)
                      ..+||||+|+|+.+++.++++||    +++|+.+|++            .++.+|.+...        ...+.+.+.|-|
T Consensus       104 L~RQVrv~G~ve~vs~eesd~Yf~sRPr~S~iGAWAS------------~QS~~i~~r~~Le~~~ae~~~kf~~~~iP~P  171 (214)
T COG0259         104 LERQVRVEGRVERVSDEESDAYFASRPRGSQIGAWAS------------KQSRPIASRAALEAKVAELTAKFADGEIPRP  171 (214)
T ss_pred             ccceEEEeeeeeeCCHHHHHHHHhcCCCcCccchhhc------------cCccccCCHHHHHHHHHHHHHhcCCCCCCCC
Confidence            99999999999999999999986    5788888887            45566654332        122333333448


Q ss_pred             CCeEEEEEeecEEEeEec---CCCCeEEEEEccCCCCCCCceEEEeec
Q 028990          154 DAFCVLILDPDQVDYLNL---KSNQKLKFMSRLSDNGEKYWASLKTSP  198 (200)
Q Consensus       154 ~~f~v~~i~p~~ve~~~~---~~h~R~~f~~~~~~~~~~~W~~~~l~P  198 (200)
                      ++|++++|.|++||||++   |+|+|++|.++++     .|...+|.|
T Consensus       172 ~~WgG~ri~p~~iEFWqgr~~RLHdR~~y~r~~g-----~W~~~RL~P  214 (214)
T COG0259         172 PHWGGFRIVPESIEFWQGRPSRLHDRLRYRRDDG-----GWKIERLAP  214 (214)
T ss_pred             CCccceEeeeeEEEEecCCCccceeeEEEeecCC-----CeEEEecCC
Confidence            999999999999999999   5999999999843     799999998

>PRK05679 pyridoxamine 5'-phosphate oxidase; Provisional	Back alignment and domain information

>TIGR00558 pdxH pyridoxamine-phosphate oxidase	Back alignment and domain information

>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional	Back alignment and domain information

>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase	Back alignment and domain information

>KOG2586 consensus Pyridoxamine-phosphate oxidase [Coenzyme transport and metabolism]	Back alignment and domain information

>COG5135 Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF12766 Pyridox_oxase_2: Pyridoxamine 5'-phosphate oxidase; InterPro: IPR024624 Pyridoxamine 5'-phosphate oxidase catalyses the oxidation of pyridoxamine-5-P (PMP) and pyridoxine-5-P (PNP) to pyridoxal-5-P (PLP), the terminal step in the de novo biosynthesis of PLP in Escherichia coli and part of the salvage pathway of this coenzyme in both E	Back alignment and domain information

>KOG4558 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>COG3871 Uncharacterized stress protein (general stress protein 26) [General function prediction only]	Back alignment and domain information

>TIGR03618 Rv1155_F420 PPOX class probable F420-dependent enzyme	Back alignment and domain information

>PF01243 Pyridox_oxidase: Pyridoxamine 5'-phosphate oxidase; InterPro: IPR011576 Pyridoxamine 5'-phosphate oxidase (PNPOx; 1	Back alignment and domain information

>TIGR03667 Rv3369 PPOX class probable F420-dependent enzyme, Rv3369 family	Back alignment and domain information

>TIGR03666 Rv2061_F420 PPOX class probable F420-dependent enzyme, Rv2061 family	Back alignment and domain information

>TIGR03668 Rv0121_F420 PPOX class probable F420-dependent enzyme, Rv0121 family	Back alignment and domain information

>COG5015 Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF10590 PNPOx_C: Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region; InterPro: IPR019576 Pyridoxamine 5'-phosphate oxidase (1	Back alignment and domain information

>PRK06733 hypothetical protein; Provisional	Back alignment and domain information

>PRK03467 hypothetical protein; Provisional	Back alignment and domain information

>PF12900 Pyridox_ox_2: Pyridoxamine 5'-phosphate oxidase; InterPro: IPR024747 Pyridoxamine 5'-phosphate oxidase is a FMN flavoprotein that catalyses the oxidation of pyridoxamine-5-P (PMP) and pyridoxine-5-P (PNP) to pyridoxal-5-P (PLP)	Back alignment and domain information

>COG3467 Predicted flavin-nucleotide-binding protein [General function prediction only]	Back alignment and domain information

>PF13883 Pyrid_oxidase_2: Pyridoxamine 5'-phosphate oxidase; PDB: 1XHN_C	Back alignment and domain information

>TIGR00026 hi_GC_TIGR00026 deazaflavin-dependent nitroreductase family protein	Back alignment and domain information

>COG3576 Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase [General function prediction only]	Back alignment and domain information

>COG3787 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>PF04075 DUF385: Domain of unknown function (DUF385) ; InterPro: IPR004378 This entry represents a family of proteins found in paralogous families in the genera Mycobacterium and Streptomyces	Back alignment and domain information

>KOG3374 consensus Cellular repressor of transcription [Transcription]	Back alignment and domain information

>PF04289 DUF447: Protein of unknown function (DUF447); InterPro: IPR007386 This entry contains archaeal and bacterial proteins of unknown function	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		200
2i51_A		195	Crystal Structure Of A Pyridoxamine 5'-Phosphate Ox		5e-32
1nrg_A		261	Structure And Properties Of Recombinant Human Pyrid		2e-04
3hy8_A		261	Crystal Structure Of Human Pyridoxine 5'-Phosphate		2e-04
1t9m_A		214	X-Ray Crystal Structure Of Phzg From Pseudomonas Ae		7e-04

>pdb|2I51|A Chain A, Crystal Structure Of A Pyridoxamine 5'-Phosphate Oxidase-Related, Fmn Binding Protein (Npun_f5749) From Nostoc Punctiforme Pcc 73102 At 1.40 A Resolution Length = 195

Back alignment and structure

Iteration: 1

Score = 134 bits (336), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 74/194 (38%), Positives = 112/194 (57%), Gaps = 5/194 (2%) Query: 7 APWKQLLLQALESQSHLKHSIYFQLATVGTNGRPSNRTVVFRGFQDNTDKIQINSDTRSR 66 APW+ + AL L ++ Y QLATV NGRP+NRT+VFRGF ++T++++ +DTRS Sbjct: 5 APWRGAIAHALHRNRSLVYARYLQLATVQPNGRPANRTLVFRGFLEDTNQLRFITDTRSA 64 Query: 67 KIEELKSCPFSEICWYFTESWDQFRINGRVDVIDGSNSDPEKLQIREKSWFGCSMKARLQ 126 K ++++ P++EICWYF + +QFR G + +I +S + R W S ARLQ Sbjct: 65 KADQIQQQPWAEICWYFPNTREQFRXAGDLTLISSDDSHQDLQPARIAXWQELSDAARLQ 124 Query: 127 YLDPEQGCPSVNEQPKEFSLDP--CAGPVDAFCVLILDPDQVDYLNLKSNQKLKFMSRLS 184 + P G P + E F P PV FC+L+LDP QVD+L L+ + +++ + Sbjct: 125 FGWPYPGKPRIKES-GAFEPSPPDPIEPVPNFCLLLLDPVQVDHLELRGEPQNRWLYHRN 183 Query: 185 DNGEKYWASLKTSP 198 D E W+S +P Sbjct: 184 DQQE--WSSEAINP 195

PyMOL of 2i51

>pdb|1NRG|A Chain A, Structure And Properties Of Recombinant Human Pyridoxine-5'-Phosphate Oxidase Length = 261

Back alignment and structure

>pdb|3HY8|A Chain A, Crystal Structure Of Human Pyridoxine 5'-Phosphate Oxidase R229w Mutant Length = 261

Back alignment and structure

>pdb|1T9M|A Chain A, X-Ray Crystal Structure Of Phzg From Pseudomonas Aeruginosa Length = 214

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		200
2i51_A		195	Uncharacterized conserved protein of COG5135; pyri	4e-54
2ou5_A		175	Pyridoxamine 5'-phosphate oxidase-related, FMN-BI;	6e-20
2hq7_A		146	Protein, related to general stress protein 26(GS2	3e-10
2i02_A		148	General stress protein of COG3871; pyridoxamine 5'	4e-09
2hhz_A		150	Pyridoxamine 5'-phosphate oxidase-related; structu	5e-09
1nrg_A		261	Pyridoxine 5'-phosphate oxidase; PLP, FMN, oxidore	2e-08
1ty9_A		222	Phenazine biosynthesis protein PHZG; chorismate, o	3e-08
2fhq_A		141	Putative general stress protein; alpha-beta struct	3e-08
1dnl_A		199	Pyridoxine 5'-phosphate oxidase; beta barrel, prot	4e-08
1rfe_A		162	Hypothetical protein RV2991; structural genomics,	1e-06
2re7_A		134	Uncharacterized protein; general stress protein CO	2e-06
1ci0_A		228	Protein (PNP oxidase); B6 metabolism, structural g	3e-06
2a2j_A		246	Pyridoxamine 5'-phosphate oxidase; beta barrel, st	4e-06
3f7e_A		131	Pyridoxamine 5'-phosphate oxidase-related, FMN- bi	2e-05
2ig6_A		150	NIMC/NIMA family protein; structural genomics, joi	3e-05
2aq6_A		147	Pyridoxine 5'-phosphate oxidase; pyridoxal 5'-phos	6e-05
3ec6_A		139	General stress protein 26; alpha-beta structure, s	1e-04
2htd_A		140	Predicted flavin-nucleotide-binding protein from f	7e-04

>2i51_A Uncharacterized conserved protein of COG5135; pyridoxamine 5'-phosphate oxidase-related protein, structura genomics; HET: MSE FMN; 1.40A {Nostoc punctiforme} Length = 195	Back alignment and structure

 Score =  169 bits (431), Expect = 4e-54
 Identities = 71/184 (38%), Positives = 108/184 (58%), Gaps = 1/184 (0%)

Query: 6   TAPWKQLLLQALESQSHLKHSIYFQLATVGTNGRPSNRTVVFRGFQDNTDKIQINSDTRS 65
            APW+  +  AL     L ++ Y QLATV  NGRP+NRT+VFRGF ++T++++  +DTRS
Sbjct: 4   LAPWRGAIAHALHRNRSLVYARYLQLATVQPNGRPANRTLVFRGFLEDTNQLRFITDTRS 63

Query: 66  RKIEELKSCPFSEICWYFTESWDQFRINGRVDVIDGSNSDPEKLQIREKSWFGCSMKARL 125
            K ++++  P++EICWYF  + +QFR+ G + +I   +S  +    R   W   S  ARL
Sbjct: 64  AKADQIQQQPWAEICWYFPNTREQFRMAGDLTLISSDDSHQDLQPARIAMWQELSDAARL 123

Query: 126 QYLDPEQGCPSVNEQ-PKEFSLDPCAGPVDAFCVLILDPDQVDYLNLKSNQKLKFMSRLS 184
           Q+  P  G P + E    E S      PV  FC+L+LDP QVD+L L+   + +++   +
Sbjct: 124 QFGWPYPGKPRIKESGAFEPSPPDPIEPVPNFCLLLLDPVQVDHLELRGEPQNRWLYHRN 183

Query: 185 DNGE 188
           D  E
Sbjct: 184 DQQE 187

PyMOL of 2i51

>2ou5_A Pyridoxamine 5'-phosphate oxidase-related, FMN-BI; split barrel-like fold, structural genomics, joint center FO structural genomics, JCSG; HET: MSE FMN; 1.60A {Jannaschia SP} Length = 175	Back alignment and structure

>2hq7_A Protein, related to general stress protein 26(GS2 B.subtilis; NP_350077.1, structural genomics, joint center for structural genomics; 2.00A {Clostridium acetobutylicum} SCOP: b.45.1.1 Length = 146	Back alignment and structure

>2i02_A General stress protein of COG3871; pyridoxamine 5'-phosphate like family protein, structural genomics, joint center for structural genomics; HET: MSE FMN P33; 1.80A {Nostoc punctiforme} SCOP: b.45.1.1 Length = 148	Back alignment and structure

>2hhz_A Pyridoxamine 5'-phosphate oxidase-related; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.00A {Streptococcus suis} Length = 150	Back alignment and structure

>1nrg_A Pyridoxine 5'-phosphate oxidase; PLP, FMN, oxidoreductase; HET: FMN PLP; 1.95A {Homo sapiens} SCOP: b.45.1.1 PDB: 3hy8_A* Length = 261	Back alignment and structure

>1ty9_A Phenazine biosynthesis protein PHZG; chorismate, oxidoreductase; HET: FMN; 1.80A {Pseudomonas fluorescens} SCOP: b.45.1.1 PDB: 1t9m_A* Length = 222	Back alignment and structure

>2fhq_A Putative general stress protein; alpha-beta structure, structural genomics, PSI, protein STRU initiative; HET: MSE; 1.87A {Bacteroides thetaiotaomicron} SCOP: b.45.1.1 Length = 141	Back alignment and structure

>1dnl_A Pyridoxine 5'-phosphate oxidase; beta barrel, protein-FMN complex, oxidoreductase; HET: MSE FMN; 1.80A {Escherichia coli K12} SCOP: b.45.1.1 PDB: 1g79_A* 1g76_A* 1g78_A* 1g77_A* 1jnw_A* 1wv4_A* Length = 199	Back alignment and structure

>1rfe_A Hypothetical protein RV2991; structural genomics, TB, FMN BIN PSI, protein structure initiative, TB structural genomics consortium; 2.00A {Mycobacterium tuberculosis} SCOP: b.45.1.1 Length = 162	Back alignment and structure

>2re7_A Uncharacterized protein; general stress protein COG3871, structural genomics, joint C structural genomics, JCSG; 2.50A {Psychrobacter arcticus} Length = 134	Back alignment and structure

>1ci0_A Protein (PNP oxidase); B6 metabolism, structural genomics, PSI, protein structure initiative; HET: FMN; 2.70A {Saccharomyces cerevisiae} SCOP: b.45.1.1 Length = 228	Back alignment and structure

>2a2j_A Pyridoxamine 5'-phosphate oxidase; beta barrel, structural genomics, mycobacterium tuberculosis structural proteomics project, XMTB; HET: CME; 2.50A {Mycobacterium tuberculosis} SCOP: b.45.1.1 Length = 246	Back alignment and structure

>3f7e_A Pyridoxamine 5'-phosphate oxidase-related, FMN- binding; F420 dependent reductase, unknown function; HET: MSE; 1.23A {Mycobacterium smegmatis} Length = 131	Back alignment and structure

>2ig6_A NIMC/NIMA family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: FMN; 1.80A {Clostridium acetobutylicum} Length = 150	Back alignment and structure

>2aq6_A Pyridoxine 5'-phosphate oxidase; pyridoxal 5'-phosphate, STR genomics, PSI, protein structure initiative, TB structural consortium; HET: PLP; 1.70A {Mycobacterium tuberculosis} SCOP: b.45.1.1 PDB: 1xxo_A 1y30_A* 1w9a_A* Length = 147	Back alignment and structure

>3ec6_A General stress protein 26; alpha-beta structure, structural genomics of niaid; HET: FAD; 1.60A {Bacillus anthracis} Length = 139	Back alignment and structure

>2htd_A Predicted flavin-nucleotide-binding protein from family structurally related to pyridoxine...; putative pyridoxamine 5'-phosphate oxidase; HET: MSE; 1.60A {Lactobacillus delbrueckii subsp} Length = 140	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		200
2i51_A		195	Uncharacterized conserved protein of COG5135; pyri	100.0
1dnl_A		199	Pyridoxine 5'-phosphate oxidase; beta barrel, prot	100.0
1ci0_A		228	Protein (PNP oxidase); B6 metabolism, structural g	100.0
1nrg_A		261	Pyridoxine 5'-phosphate oxidase; PLP, FMN, oxidore	100.0
1ty9_A		222	Phenazine biosynthesis protein PHZG; chorismate, o	100.0
2a2j_A		246	Pyridoxamine 5'-phosphate oxidase; beta barrel, st	100.0
2ou5_A		175	Pyridoxamine 5'-phosphate oxidase-related, FMN-BI;	100.0
3dmb_A		147	Putative general stress protein 26 with A PNP-OXI	99.88
2re7_A		134	Uncharacterized protein; general stress protein CO	99.87
2i02_A		148	General stress protein of COG3871; pyridoxamine 5'	99.86
2qea_A		160	Putative general stress protein 26; structural gen	99.85
2hhz_A		150	Pyridoxamine 5'-phosphate oxidase-related; structu	99.85
2ig6_A		150	NIMC/NIMA family protein; structural genomics, joi	99.84
3u35_A		182	General stress protein; PNP-oxidase like fold, FMN	99.84
2iab_A		155	Hypothetical protein; NP_828636.1, structural geno	99.84
3ec6_A		139	General stress protein 26; alpha-beta structure, s	99.82
2hq7_A		146	Protein, related to general stress protein 26(GS2	99.81
3db0_A		128	LIN2891 protein; putative pyridoxamine 5'-phosphat	99.79
2fhq_A		141	Putative general stress protein; alpha-beta struct	99.77
3ba3_A		145	Protein LP_0091, pyridoxamine 5'-phosphate oxidase	99.7
1vl7_A		157	Hypothetical protein ALR5027; structural genomics,	99.67
2asf_A		137	Hypothetical protein RV2074; H37RV, structural gen	99.65
3f7e_A		131	Pyridoxamine 5'-phosphate oxidase-related, FMN- bi	99.61
2aq6_A		147	Pyridoxine 5'-phosphate oxidase; pyridoxal 5'-phos	99.58
2htd_A		140	Predicted flavin-nucleotide-binding protein from f	99.57
1rfe_A		162	Hypothetical protein RV2991; structural genomics,	99.56
2q9k_A		151	Uncharacterized protein; split barrel-like fold, s	99.53
3tgv_A		148	Heme-binding protein HUTZ; 2.00A {Vibrio cholerae}	99.42
3cp3_A		148	Uncharacterized protein; alpha-beta fold, structur	99.36
2arz_A		247	Hypothetical protein PA4388; hypothetical protein,	99.36
3swj_A		251	CHUZ, putative uncharacterized protein; heme oxyge	99.23
2hq9_A		149	MLL6688 protein; structural genomics, joint center	99.19
2hti_A		185	BH0577 protein; structural genomics, joint center	99.19
2fg9_A		178	5-nitroimidazole antibiotic resistance protein; ST	99.19
1xhn_A		184	CREG, cellular repressor of E1A-stimulated genes;	99.12
3dnh_A		258	Uncharacterized protein ATU2129; APC6114, agrobact	99.04
3u5w_A		148	Putative uncharacterized protein; ssgcid, seattle	99.02
3gas_A		259	Heme oxygenase; FMN-binding split barrel, oxidored	99.01
3fkh_A		138	Putative pyridoxamine 5'-phosphate oxidase; NP_601	99.01
2fur_A		209	Hypothetical protein; structural genomics, joint c	99.0
2vpa_A		216	NIMA-related protein; cofactor, atomic resolution,	98.91
3a6r_A		122	FMN-binding protein; electron transport, flavoprot	98.84
3in6_A		148	FMN-binding protein; structural genomics, joint ce	98.67
2ol5_A		202	PAI 2 protein; structural genomics, PSI-2, protein	97.5
3r5l_A		122	Deazaflavin-dependent nitroreductase; PA-824, spli	96.67
3h96_A		143	F420-H2 dependent reductase A; pnpox, flavin, afla	93.9
3r5y_A		147	Putative uncharacterized protein; PA-824, nitroimi	93.56
3r5z_A		145	Putative uncharacterized protein; split barrel-lik	93.05
2ptf_A		233	Uncharacterized protein MTH_863; structural genomi	82.54

>2i51_A Uncharacterized conserved protein of COG5135; pyridoxamine 5'-phosphate oxidase-related protein, structura genomics; HET: MSE FMN; 1.40A {Nostoc punctiforme}	Back alignment and structure

Probab=100.00  E-value=1.1e-42  Score=279.05  Aligned_cols=189  Identities=38%  Similarity=0.682  Sum_probs=162.8

Q ss_pred             CChhHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCceEEEEEEEEEeCCCCEEEEEecCCCcchhhhhcCCcEEEEEEEC
Q 028990            5 VTAPWKQLLLQALESQSHLKHSIYFQLATVGTNGRPSNRTVVFRGFQDNTDKIQINSDTRSRKIEELKSCPFSEICWYFT   84 (200)
Q Consensus         5 ~~~~w~~~l~~~~~~~~~~~~~~~~~LATv~~dG~P~~R~v~~r~~~~~~~~l~F~Td~~S~K~~~i~~np~v~l~~~~~   84 (200)
                      ..++|+.||+++++.+...+.+++|+|||+++||.|++|+|++++++++.++|+|+||.+|+|++||++||+|+|+|+++
T Consensus         3 ~~~~w~~wl~~a~~~~~~~p~~~~~~LATv~~dG~P~~R~v~~~~~d~~~~~l~F~T~~~S~K~~~l~~np~v~l~f~~~   82 (195)
T 2i51_A            3 SLAPWRGAIAHALHRNRSLVYARYLQLATVQPNGRPANRTLVFRGFLEDTNQLRFITDTRSAKADQIQQQPWAEICWYFP   82 (195)
T ss_dssp             CCCTTHHHHHHHHHHTTTCGGGGEEEEEEECTTSCEEEEEEECCCBCTTSSCEEEEEETTSHHHHHHHHCCEEEEEEEET
T ss_pred             chhHHHHHHHHHHHhCCCCCCCCEEEEEEECCCCCeeEEEEEEEEEcCCCCeEEEEEcCCccHHHHHhhCCeEEEEEEeC
Confidence            34799999999998754444556999999999999999999999887643589999999999999999999999999999


Q ss_pred             CCceEEEEEEEEEEEcCCCCChhhhhhhhhhhhcCCHhHHhcccCCCCCCcCCCCCCCccCC--CCCCCCCCCeEEEEEe
Q 028990           85 ESWDQFRINGRVDVIDGSNSDPEKLQIREKSWFGCSMKARLQYLDPEQGCPSVNEQPKEFSL--DPCAGPVDAFCVLILD  162 (200)
Q Consensus        85 ~~~~qiri~G~a~~~~~~~~~~~~~~~~~~~W~~~~~~~r~~~~~~~pg~~~~~~~~~~~~~--~~~~~~~~~f~v~~i~  162 (200)
                      ...+||||+|+|+++++.+.+.||..++.++|.+.+..+|..|.++.||+++.+... .+..  ....+.+++|++|+|.
T Consensus        83 ~~~~qvri~G~a~~v~~~~~~~~~~~~r~~~w~~~~~~sr~~~~~~spg~~~~~~~~-~~~~~~~~~~p~p~~w~~~~v~  161 (195)
T 2i51_A           83 NTREQFRMAGDLTLISSDDSHQDLQPARIAMWQELSDAARLQFGWPYPGKPRIKESG-AFEPSPPDPIEPVPNFCLLLLD  161 (195)
T ss_dssp             TTTEEEEEEEEEEEECSSSTTGGGHHHHHHHHHHSCHHHHHGGGSCCTTSBCCCCGG-GGCCCCCCSSSCCTTEEEEEEE
T ss_pred             CCCEEEEEEEEEEEEChHHhhhhhHHHHHHHHHhCChhhhhhcccCCCCCCccchhH-HhhhhccCCCCCCCceEEEEEE
Confidence            999999999999999999999999999999999999999999988999999875432 2211  1122447999999999


Q ss_pred             ecEEEeEecC--CCCeEEEEEccCCCCCCCceEEEeec
Q 028990          163 PDQVDYLNLK--SNQKLKFMSRLSDNGEKYWASLKTSP  198 (200)
Q Consensus       163 p~~ve~~~~~--~h~R~~f~~~~~~~~~~~W~~~~l~P  198 (200)
                      |++||||+++  .|+|++|+++.+    +.|..++|+|
T Consensus       162 P~~iefwq~~~~rh~R~~y~~~~~----~~W~~~rl~P  195 (195)
T 2i51_A          162 PVQVDHLELRGEPQNRWLYHRNDQ----QEWSSEAINP  195 (195)
T ss_dssp             EEEEEEEESSSSSCEEEEEEECTT----SCEEEEEBCC
T ss_pred             ccEEEEEecCCCCceEEEEEECCC----CCEEEEEeCC
Confidence            9999999993  499999999643    2699999998

PyMOL of 2i51

>1dnl_A Pyridoxine 5'-phosphate oxidase; beta barrel, protein-FMN complex, oxidoreductase; HET: MSE FMN; 1.80A {Escherichia coli K12} SCOP: b.45.1.1 PDB: 1g79_A* 1g76_A* 1g78_A* 1g77_A* 1jnw_A* 1wv4_A*	Back alignment and structure

>1ci0_A Protein (PNP oxidase); B6 metabolism, structural genomics, PSI, protein structure initiative; HET: FMN; 2.70A {Saccharomyces cerevisiae} SCOP: b.45.1.1	Back alignment and structure

>1nrg_A Pyridoxine 5'-phosphate oxidase; PLP, FMN, oxidoreductase; HET: FMN PLP; 1.95A {Homo sapiens} SCOP: b.45.1.1 PDB: 3hy8_A*	Back alignment and structure

>1ty9_A Phenazine biosynthesis protein PHZG; chorismate, oxidoreductase; HET: FMN; 1.80A {Pseudomonas fluorescens} SCOP: b.45.1.1 PDB: 1t9m_A*	Back alignment and structure

>2a2j_A Pyridoxamine 5'-phosphate oxidase; beta barrel, structural genomics, mycobacterium tuberculosis structural proteomics project, XMTB; HET: CME; 2.50A {Mycobacterium tuberculosis} SCOP: b.45.1.1	Back alignment and structure

>2ou5_A Pyridoxamine 5'-phosphate oxidase-related, FMN-BI; split barrel-like fold, structural genomics, joint center FO structural genomics, JCSG; HET: MSE FMN; 1.60A {Jannaschia SP}	Back alignment and structure

>3dmb_A Putative general stress protein 26 with A PNP-OXI fold; PNP-oxidase like fold, structural genomics; HET: MSE; 2.30A {Xanthomonas campestris PV}	Back alignment and structure

>2re7_A Uncharacterized protein; general stress protein COG3871, structural genomics, joint C structural genomics, JCSG; 2.50A {Psychrobacter arcticus}	Back alignment and structure

>2i02_A General stress protein of COG3871; pyridoxamine 5'-phosphate like family protein, structural genomics, joint center for structural genomics; HET: MSE FMN P33; 1.80A {Nostoc punctiforme} SCOP: b.45.1.1	Back alignment and structure

>2qea_A Putative general stress protein 26; structural genomics, JOI for structural genomics, JCSG, protein structure initiative oxidoreductase; 2.46A {Jannaschia SP}	Back alignment and structure

>2hhz_A Pyridoxamine 5'-phosphate oxidase-related; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.00A {Streptococcus suis}	Back alignment and structure

>2ig6_A NIMC/NIMA family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: FMN; 1.80A {Clostridium acetobutylicum}	Back alignment and structure

>3u35_A General stress protein; PNP-oxidase like fold, FMN/FAD, protein BI; HET: PGE; 2.50A {Xanthomonas axonopodis PV} PDB: 3u34_A*	Back alignment and structure

>2iab_A Hypothetical protein; NP_828636.1, structural genomics, JOIN for structural genomics, JCSG; 2.00A {Streptomyces avermitilis}	Back alignment and structure

>3ec6_A General stress protein 26; alpha-beta structure, structural genomics of niaid; HET: FAD; 1.60A {Bacillus anthracis} SCOP: b.45.1.0	Back alignment and structure

>2hq7_A Protein, related to general stress protein 26(GS2 B.subtilis; NP_350077.1, structural genomics, joint center for structural genomics; 2.00A {Clostridium acetobutylicum} SCOP: b.45.1.1	Back alignment and structure

>3db0_A LIN2891 protein; putative pyridoxamine 5'-phosphate oxidase, STR genomics, joint center for structural genomics, JCSG; 2.00A {Listeria innocua}	Back alignment and structure

>2fhq_A Putative general stress protein; alpha-beta structure, structural genomics, PSI, protein STRU initiative; HET: MSE; 1.87A {Bacteroides thetaiotaomicron} SCOP: b.45.1.1	Back alignment and structure

>3ba3_A Protein LP_0091, pyridoxamine 5'-phosphate oxidase-like protein; NP_783940.1, structural genomics; HET: MSE; 1.55A {Lactobacillus plantarum WCFS1}	Back alignment and structure

>1vl7_A Hypothetical protein ALR5027; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, oxidoreductase; 1.50A {Nostoc SP} SCOP: b.45.1.1	Back alignment and structure

>2asf_A Hypothetical protein RV2074; H37RV, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: CIT; 1.60A {Mycobacterium tuberculosis} SCOP: b.45.1.1	Back alignment and structure

>3f7e_A Pyridoxamine 5'-phosphate oxidase-related, FMN- binding; F420 dependent reductase, unknown function; HET: MSE; 1.23A {Mycobacterium smegmatis}	Back alignment and structure

>2aq6_A Pyridoxine 5'-phosphate oxidase; pyridoxal 5'-phosphate, STR genomics, PSI, protein structure initiative, TB structural consortium; HET: PLP; 1.70A {Mycobacterium tuberculosis} SCOP: b.45.1.1 PDB: 1xxo_A 1y30_A* 1w9a_A*	Back alignment and structure

>2htd_A Predicted flavin-nucleotide-binding protein from family structurally related to pyridoxine...; putative pyridoxamine 5'-phosphate oxidase; HET: MSE; 1.60A {Lactobacillus delbrueckii subsp}	Back alignment and structure

>1rfe_A Hypothetical protein RV2991; structural genomics, TB, FMN BIN PSI, protein structure initiative, TB structural genomics consortium; 2.00A {Mycobacterium tuberculosis} SCOP: b.45.1.1	Back alignment and structure

>2q9k_A Uncharacterized protein; split barrel-like fold, structural genomics, joint center FO structural genomics, JCSG; HET: UNL; 1.59A {Exiguobacterium sibiricum}	Back alignment and structure

>3tgv_A Heme-binding protein HUTZ; 2.00A {Vibrio cholerae}	Back alignment and structure

>3cp3_A Uncharacterized protein; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Corynebacterium diphtheriae nctc 13129ORGANISM_TAXID}	Back alignment and structure

>2arz_A Hypothetical protein PA4388; hypothetical protein,structural genomics,MCSG, PSI, protein structure initiative; 2.00A {Pseudomonas aeruginosa} SCOP: b.45.1.1	Back alignment and structure

>3swj_A CHUZ, putative uncharacterized protein; heme oxygenase, bacterial iron aquisition, heme bindin; HET: HEM; 2.41A {Campylobacter jejuni}	Back alignment and structure

>2hq9_A MLL6688 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, flavoprotein; HET: FAD; 1.95A {Mesorhizobium loti} SCOP: b.45.1.1	Back alignment and structure

>2hti_A BH0577 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, FMN-binding protein; HET: FAD; 2.50A {Bacillus halodurans} SCOP: b.45.1.1	Back alignment and structure

>2fg9_A 5-nitroimidazole antibiotic resistance protein; STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: FAD; 2.20A {Bacteroides thetaiotaomicron} SCOP: b.45.1.1	Back alignment and structure

>1xhn_A CREG, cellular repressor of E1A-stimulated genes; beta-barrel, unknown function; HET: MSE; 1.95A {Homo sapiens} SCOP: b.45.1.1	Back alignment and structure

>3dnh_A Uncharacterized protein ATU2129; APC6114, agrobacterium tumefaciens STR. C58 structural genomics, PSI-2, protein structure initiative; 1.94A {Agrobacterium tumefaciens}	Back alignment and structure

>3u5w_A Putative uncharacterized protein; ssgcid, seattle structural genomics center for infectious DI FMN-binding protein; 2.05A {Brucella melitensis biovar abortus} SCOP: b.45.1.0 PDB: 3u0i_A	Back alignment and structure

>3gas_A Heme oxygenase; FMN-binding split barrel, oxidoreductase; HET: HEM; 1.80A {Helicobacter pylori}	Back alignment and structure

>3fkh_A Putative pyridoxamine 5'-phosphate oxidase; NP_601736.1, STR genomics, joint center for structural genomics, JCSG; HET: P33; 2.51A {Corynebacterium glutamicum atcc 13032}	Back alignment and structure

>2fur_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.80A {Thermoplasma acidophilum} SCOP: b.45.1.1	Back alignment and structure

>2vpa_A NIMA-related protein; cofactor, atomic resolution, antibiotic resistance, oxidoreductase; 1.2A {Deinococcus radiodurans} SCOP: b.45.1.1 PDB: 1w3p_A 1w3q_A 1w3r_A* 1w3o_A 2x1k_A 2x1j_A	Back alignment and structure

>3a6r_A FMN-binding protein; electron transport, flavoprotein; HET: FMN; 1.20A {Desulfovibrio vulgaris} PDB: 1axj_A* 1flm_A* 3awh_A* 3amf_A* 3a6q_A* 1wll_A* 3a20_A* 1wli_A* 1wlk_A* 2e83_A*	Back alignment and structure

>3in6_A FMN-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, flavoprotein; HET: FMN; 2.12A {Syntrophomonas wolfei subsp}	Back alignment and structure

>2ol5_A PAI 2 protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.50A {Geobacillus stearothermophilus}	Back alignment and structure

>3r5l_A Deazaflavin-dependent nitroreductase; PA-824, split barrel-like fold, DUF385, deazaflavin-dependen nitroreductase, nitroimidazoles; HET: MES; 1.55A {Mycobacterium tuberculosis} PDB: 3r5p_A 3r5w_A* 3r5r_A*	Back alignment and structure

>3h96_A F420-H2 dependent reductase A; pnpox, flavin, aflatoxin, flavoprotein; 2.00A {Mycobacterium smegmatis str}	Back alignment and structure

>3r5y_A Putative uncharacterized protein; PA-824, nitroimidazoles, split barrel-like fold, DUF385, DEA dependent nitroreductase, unknown function; HET: F42; 1.80A {Nocardia farcinica}	Back alignment and structure

>3r5z_A Putative uncharacterized protein; split barrel-like fold, DUF385, deazaflavin-dependent reduct F420-dependent reductase, FDR; HET: F42; 1.50A {Nocardia farcinica}	Back alignment and structure

>2ptf_A Uncharacterized protein MTH_863; structural genomics, unknown function, PSI-2, protein struct initiative; HET: FMN; 2.35A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: b.45.1.4	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		200
d2hq7a1		141	b.45.1.1 (A:2-142) Hypotheical protein CAC3491 {Cl	1e-10
d2i02a1		143	b.45.1.1 (A:5-147) General stress protein 26 {Nost	5e-10
d2fhqa1		135	b.45.1.1 (A:3-137) Putative general stress protein	8e-08
d1ci0a_		205	b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP	9e-07
d1w9aa_		142	b.45.1.1 (A:) Hypothetical protein Rv1155 {Mycobac	1e-06
d2a2ja1		201	b.45.1.1 (A:24-224) Pyridoxine 5'-phoshate oxidase	3e-06
d1rfea_		160	b.45.1.1 (A:) Hypothetical protein Rv2991 {Mycobac	8e-06
d1t9ma_		204	b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP	9e-06
d1dnla_		199	b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP	3e-05
d2asfa1		125	b.45.1.1 (A:11-135) Hypothetical protein Rv2074 {M	5e-05
d1vl7a_		135	b.45.1.1 (A:) Hypothetical protein Alr5027 {Cyanob	0.002

>d2hq7a1 b.45.1.1 (A:2-142) Hypotheical protein CAC3491 {Clostridium acetobutylicum [TaxId: 1488]} Length = 141	Back information, alignment and structure


class: All beta proteins
fold: Split barrel-like
superfamily: FMN-binding split barrel
family: PNP-oxidase like
domain: Hypotheical protein CAC3491
species: Clostridium acetobutylicum [TaxId: 1488]

 Score = 55.1 bits (132), Expect = 1e-10
 Identities = 16/100 (16%), Positives = 40/100 (40%), Gaps = 1/100 (1%)

Query: 18  ESQSHLKHSIYFQLATVGTNGRPSNRTVVFRGFQDNTDKIQINSDTRSRKIEELKSCPFS 77
           ES   ++ S    + T G NG P+ + ++         K  ++++T +R +E LK     
Sbjct: 8   ESNELVESSKIVMVGTNGENGYPNIKAMMRLKHDGL-KKFWLSTNTSTRMVERLKKNNKI 66

Query: 78  EICWYFTESWDQFRINGRVDVIDGSNSDPEKLQIREKSWF 117
            + +     +    + G ++++    S         + ++
Sbjct: 67  CLYFVDDNKFAGLMLVGTIEILHDRASKEMLWTDGCEIYY 106

PyMOL of d2hq7a1

>d2i02a1 b.45.1.1 (A:5-147) General stress protein 26 {Nostoc punctiforme pcc 73102 [TaxId: 63737]} Length = 143	Back information, alignment and structure

>d2fhqa1 b.45.1.1 (A:3-137) Putative general stress protein BT1439 {Bacteroides thetaiotaomicron [TaxId: 818]} Length = 135	Back information, alignment and structure

>d1ci0a_ b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 205	Back information, alignment and structure

>d1w9aa_ b.45.1.1 (A:) Hypothetical protein Rv1155 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 142	Back information, alignment and structure

>d2a2ja1 b.45.1.1 (A:24-224) Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Mycobacterium tuberculosis [TaxId: 1773]} Length = 201	Back information, alignment and structure

>d1rfea_ b.45.1.1 (A:) Hypothetical protein Rv2991 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 160	Back information, alignment and structure

>d1t9ma_ b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Pseudomonas aeruginosa [TaxId: 287]} Length = 204	Back information, alignment and structure

>d1dnla_ b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Escherichia coli [TaxId: 562]} Length = 199	Back information, alignment and structure

>d2asfa1 b.45.1.1 (A:11-135) Hypothetical protein Rv2074 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 125	Back information, alignment and structure

>d1vl7a_ b.45.1.1 (A:) Hypothetical protein Alr5027 {Cyanobacterium (Nostoc sp. PCC 7120) [TaxId: 103690]} Length = 135	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		200
d1dnla_		199	Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Esch	100.0
d1t9ma_		204	Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Pseu	100.0
d1ci0a_		205	Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Bake	100.0
d1nrga_		213	Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Huma	100.0
d2a2ja1		201	Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Myco	100.0
d2i02a1		143	General stress protein 26 {Nostoc punctiforme pcc	99.92
d2hq7a1		141	Hypotheical protein CAC3491 {Clostridium acetobuty	99.92
d2fhqa1		135	Putative general stress protein BT1439 {Bacteroide	99.91
d2asfa1		125	Hypothetical protein Rv2074 {Mycobacterium tubercu	99.72
d1w9aa_		142	Hypothetical protein Rv1155 {Mycobacterium tubercu	99.63
d1rfea_		160	Hypothetical protein Rv2991 {Mycobacterium tubercu	99.6
d1flma_		122	FMN-binding protein {Desulfovibrio vulgaris, strai	99.47
d1vl7a_		135	Hypothetical protein Alr5027 {Cyanobacterium (Nost	99.41
d2fg9a1		157	5-nitroimidazole resistance protein BT3078 {Bacter	99.41
d2hq9a1		148	Hypothetical protein Mll6688 {Mesorhizobium loti [	99.25
d2htia1		156	Hypothetical protein BH0577 {Bacillus halodurans [	99.24
d2arza1		238	Hypothetical protein PA4388 {Pseudomonas aeruginos	98.67
d2fura1		193	Hypothetical protein Ta1372 {Thermoplasma acidophi	98.59
d2vpaa1		194	NimA-related protein DR0842 {Deinococcus radiodura	98.38
d1xhna1		170	Cellular repressor of E1A-stimulated genes CREG1 {	98.18
d2ptfa1		206	Uncharacterized protein MTH863 {Methanobacterium t	94.19
d2imla1		189	Hypothetical protein AF1834 {Archaeoglobus fulgidu	92.32

>d1dnla_ b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

class: All beta proteins
fold: Split barrel-like
superfamily: FMN-binding split barrel
family: PNP-oxidase like
domain: Pyridoxine 5'-phoshate oxidase (PNP oxidase)
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=7.1e-41  Score=267.09  Aligned_cols=176  Identities=13%  Similarity=0.198  Sum_probs=150.7

Q ss_pred             ChhHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCceEEEEEEEEEeCCCCEEEEEecCCCcchhhhhcCCcEEEEEEECC
Q 028990            6 TAPWKQLLLQALESQSHLKHSIYFQLATVGTNGRPSNRTVVFRGFQDNTDKIQINSDTRSRKIEELKSCPFSEICWYFTE   85 (200)
Q Consensus         6 ~~~w~~~l~~~~~~~~~~~~~~~~~LATv~~dG~P~~R~v~~r~~~~~~~~l~F~Td~~S~K~~~i~~np~v~l~~~~~~   85 (200)
                      ...++.|+++|.+.  +..++..|+||||+++|.|++|+|++|+++++  +|+||||.+|+|++||++||+|+|+|||++
T Consensus        13 ~~~f~~w~~~A~~~--~~~~p~A~~LATvd~~g~P~~RtV~lr~~~~~--g~~F~Tn~~S~K~~el~~Np~asl~f~w~~   88 (199)
T d1dnla_          13 LTLFERWLSQACEA--KLADPTAMVVATVDEHGQPYQRIVLLKHYDEK--GMVFYTNLGSRKAHQIENNPRVSLLFPWHT   88 (199)
T ss_dssp             HHHHHHHHHHHHHT--TCSCTTEEEEEEECTTSCEEEEEEECCEEETT--EEEEEEETTSHHHHHHHHCCEEEEEECCGG
T ss_pred             HHHHHHHHHHHHHc--CCCCCCEEEEEEECCCCCEecceeehhhcccC--ceEEEecccchhhhhhhcCCceEEEEeecc
Confidence            35788999998886  46789999999999999999999999999886  899999999999999999999999999999


Q ss_pred             CceEEEEEEEEEEEcCCCCChhhhhhhhhhhhcCCHhHHhcccCCCCCCcCCCCCC-----Ccc---CCCCCCCCCCCeE
Q 028990           86 SWDQFRINGRVDVIDGSNSDPEKLQIREKSWFGCSMKARLQYLDPEQGCPSVNEQP-----KEF---SLDPCAGPVDAFC  157 (200)
Q Consensus        86 ~~~qiri~G~a~~~~~~~~~~~~~~~~~~~W~~~~~~~r~~~~~~~pg~~~~~~~~-----~~~---~~~~~~~~~~~f~  157 (200)
                      ..+||||+|+|+.+++.++++|        |.+.+..++...+...++++|.+.+.     +.+   +.+...+.|++|+
T Consensus        89 ~~rQiRi~G~~~~~~~~~sd~~--------f~~rp~~sqi~a~~s~Qs~~i~~~~~l~~~~~~~~~~~~~~~~p~p~~w~  160 (199)
T d1dnla_          89 LERQVMVIGKAERLSTLEVMKY--------FHSRPRDSQIGAWVSKQSSRISARGILESKFLELKQKFQQGEVPLPSFWG  160 (199)
T ss_dssp             GTEEEEEEEEEEECCHHHHHHH--------HTTSCHHHHHHHHHCCTTSCCSCTHHHHHHHHHHHHHSTTSSCCCCTTEE
T ss_pred             hheeeEEEEEeeecccHHHHhH--------hhccCccceeeeeccccccccccHHHHHHHHHHHHhhcccCCCCCCCceE
Confidence            9999999999999999877654        77777777877777788889876542     111   1222233489999


Q ss_pred             EEEEeecEEEeEec---CCCCeEEEEEccCCCCCCCceEEEeec
Q 028990          158 VLILDPDQVDYLNL---KSNQKLKFMSRLSDNGEKYWASLKTSP  198 (200)
Q Consensus       158 v~~i~p~~ve~~~~---~~h~R~~f~~~~~~~~~~~W~~~~l~P  198 (200)
                      +|.|.|++||||++   ++|+|++|+++++     .|..++|+|
T Consensus       161 g~~l~P~~iEfw~~~~~rlH~R~~y~~~~~-----~W~~~~L~P  199 (199)
T d1dnla_         161 GFRVSLEQIEFWQGGEHRLHDRFLYQREND-----AWKIDRLAP  199 (199)
T ss_dssp             EEEECCSEEEEEECCGGGCCEEEEEEECSS-----SEEEEECCC
T ss_pred             EEEEeccEEEEeCCCCCCCeeEEEEEEcCC-----cEEEEEecC
Confidence            99999999999999   4899999999865     699999998

PyMOL of d1dnla_

>d1t9ma_ b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Pseudomonas aeruginosa [TaxId: 287]}	Back information, alignment and structure

>d1ci0a_ b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1nrga_ b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2a2ja1 b.45.1.1 (A:24-224) Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d2i02a1 b.45.1.1 (A:5-147) General stress protein 26 {Nostoc punctiforme pcc 73102 [TaxId: 63737]}	Back information, alignment and structure

>d2hq7a1 b.45.1.1 (A:2-142) Hypotheical protein CAC3491 {Clostridium acetobutylicum [TaxId: 1488]}	Back information, alignment and structure

>d2fhqa1 b.45.1.1 (A:3-137) Putative general stress protein BT1439 {Bacteroides thetaiotaomicron [TaxId: 818]}	Back information, alignment and structure

>d2asfa1 b.45.1.1 (A:11-135) Hypothetical protein Rv2074 {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d1w9aa_ b.45.1.1 (A:) Hypothetical protein Rv1155 {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d1rfea_ b.45.1.1 (A:) Hypothetical protein Rv2991 {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d1flma_ b.45.1.1 (A:) FMN-binding protein {Desulfovibrio vulgaris, strain Miyazaki F [TaxId: 881]}	Back information, alignment and structure

>d1vl7a_ b.45.1.1 (A:) Hypothetical protein Alr5027 {Cyanobacterium (Nostoc sp. PCC 7120) [TaxId: 103690]}	Back information, alignment and structure

>d2fg9a1 b.45.1.1 (A:1-157) 5-nitroimidazole resistance protein BT3078 {Bacteroides thetaiotaomicron [TaxId: 818]}	Back information, alignment and structure

>d2hq9a1 b.45.1.1 (A:1-148) Hypothetical protein Mll6688 {Mesorhizobium loti [TaxId: 381]}	Back information, alignment and structure

>d2htia1 b.45.1.1 (A:10-165) Hypothetical protein BH0577 {Bacillus halodurans [TaxId: 86665]}	Back information, alignment and structure

>d2arza1 b.45.1.1 (A:2-239) Hypothetical protein PA4388 {Pseudomonas aeruginosa [TaxId: 287]}	Back information, alignment and structure

>d2fura1 b.45.1.1 (A:16-208) Hypothetical protein Ta1372 {Thermoplasma acidophilum [TaxId: 2303]}	Back information, alignment and structure

>d2vpaa1 b.45.1.1 (A:2-195) NimA-related protein DR0842 {Deinococcus radiodurans [TaxId: 1299]}	Back information, alignment and structure

>d1xhna1 b.45.1.1 (A:13-182) Cellular repressor of E1A-stimulated genes CREG1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ptfa1 b.45.1.4 (A:15-220) Uncharacterized protein MTH863 {Methanobacterium thermoautotrophicum [TaxId: 145262]}	Back information, alignment and structure

>d2imla1 b.45.1.4 (A:1-189) Hypothetical protein AF1834 {Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure