Citrus Sinensis ID: 028995

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200
Protein Sequence
MAAASSCATLALCSSLTSHCKISCQNPNPHPQLSLSKSKLCSFPSPKLYTRPTFSFTHKFSQTEPPPVSEPEVEPEAALEAEAEPTTEVVESAAKEEPKREEIFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVHAVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQVKDLSE
Secondary Structure (PSIPRED)
ccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccHHcccccccccccccEEEEEEEccEEEEEccccEEEEEEccccccccEEEEcEEEEEEccccEEEcccEEcccEEEEEEEEcccccEEEEEEccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHcccEEEEccccccccccEEEcccccccccccccccccccccccccccccccccccccEccccccccccccccccccEcccccccccEEEEEEEEcccEEEEEcccEEEEEEEcccccccEEEEEEEEEEEccccEEEcccEEcccEEEEEEEEcccccEEEEEEEcccccHHHcccccHHHcccc
Coil and Loop (DISEMBL)
MAAASSCATLALCSSLTshckiscqnpnphpqlslsksklcsfpspklytrptfsfthkfsqtepppvsepevepeaaleaeaepttEVVESaakeepkrEEIFAVVMIGsrqyivfpgrfiytqrlkganvndkIILNKVLLVgtktttyigkpvvTNAAVHAVVEEQGLNPKVIVFKYkkkknyrrnighrqvkdlse
Flexible Loop (DISEMBL)
MAAASSCATLALCSSLTSHCKISCQNPNPHPQLSLSKSKLCSFPSPKLYTRPTFSFTHKFSQTEPPPVSEPEVEPEAAleaeaepttevvesaakeepkreEIFAVVMIGSRQYIVFPGRFIYTQRlkganvndkiilNKVLLVGTKTTTYIGKPVVTNAAVHAvveeqglnpkvivfkykkkknyrrnighrqvkdlse
Low Complexity Region (SEG)
MaaasscatlalcssltsHCKISCQNPNPHPQLSLSKSKLCSFPSPKLYTRPTFSFTHKFSQTepppvsepevepeaaleaeaepttevvesaaKEEPKREEIFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVHAVVEEQGLNPkvivfkykkkknyrrniGHRQVKDLSE
Disordered region (IsUnstruct)
*******ATLALCSSLTSHCKIS******************************************************************************EIFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVHAVVEEQGLNPKVIVFKYKKKKNYR*************
Disordered Region (DISOPRED)
***********LC**L*************************************************************************************EIFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVHAVVEEQGLNPKVIVFKYKKKKNYRRNIGH********
Disordered Region (DISEMBL)
*********LALCSSLTSHCKISCQNPNPHPQLSLSKSKLCSFPSPKLYTRPTFSFTH****************************************KREEIFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVHAVVEEQGLNPKVIVFKYKKKKNYRRNIGH********
Disordered Region (DISPRO)
*****SCATLALCSSLTSHCKISCQNPNPHPQLS*****************PTFSFTHKFSQTEPPPVSEPE**************************KREEIFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVHAVVEEQGLNPKVIVFKYKKKK****************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAAASSCATLALCSSLTSHCKISCQNPNPHPQLSLSKSKLCSFPSPKLYTRPTFSFTHKFSQTEPPPVSEPEVEPEAALEAEAEPTTEVVESAAKEEPKREEIFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVHAVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQVKDLSE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	200	2.2.26 [Sep-21-2011]
P51412	220	50S ribosomal protein L21	yes	no	0.91	0.827	0.567	2e-45
P24613	256	50S ribosomal protein L21	N/A	no	0.485	0.378	0.865	9e-36
Q8L9A0	270	50S ribosomal protein L21	no	no	0.47	0.348	0.531	2e-18
Q54IF0	172	Probable 39S ribosomal pr	yes	no	0.555	0.645	0.437	1e-17
B8E0B4	105	50S ribosomal protein L21	yes	no	0.455	0.866	0.510	1e-16
B5YEQ3	105	50S ribosomal protein L21	yes	no	0.455	0.866	0.489	7e-16
A0LPF7	106	50S ribosomal protein L21	yes	no	0.455	0.858	0.423	1e-15
Q2RL02	104	50S ribosomal protein L21	yes	no	0.455	0.875	0.467	1e-15
A6LQR6	103	50S ribosomal protein L21	yes	no	0.455	0.883	0.489	1e-15
A5N6J9	103	50S ribosomal protein L21	yes	no	0.455	0.883	0.478	2e-15

>sp|P51412|RK21_ARATH 50S ribosomal protein L21, chloroplastic OS=Arabidopsis thaliana GN=RPL21 PE=2 SV=1

 Score =  182 bits (461), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 113/199 (56%), Positives = 140/199 (70%), Gaps = 17/199 (8%)

Query: 4   ASSCATLALCSSLTSHCKISCQNPN------PHPQLSLSKSKLCSFPSPKL--YTRPTFS 55
           ASS ATL+LCS+ ++HC ++ +  +        P L+L+K  L  F SP     +R  F+
Sbjct: 2   ASSSATLSLCSTFSAHCNVNSRRSSTILCSLSKPSLNLAK-PLTGFLSPSTASTSRTAFT 60

Query: 56  FTHKFSQTEPPPVSEPEVEPEAALEAEAEPTTEVVESAAKEEPKREEIFAVVMIGSRQYI 115
              KF++      S  E EPE   + EA   ++V E   +E+ KREEIFAV+M+G RQYI
Sbjct: 61  VAPKFAE------SVVEAEPETT-DIEAVVVSDVSE-VTEEKAKREEIFAVIMVGGRQYI 112

Query: 116 VFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVHAVVEEQGLNPKV 175
           VFPGR++YTQRLK ANV+D+I+LNKVLLVGTKT TYIGKPVVTNA VHAVVE QGLN KV
Sbjct: 113 VFPGRYLYTQRLKDANVDDQIVLNKVLLVGTKTHTYIGKPVVTNATVHAVVESQGLNDKV 172

Query: 176 IVFKYKKKKNYRRNIGHRQ 194
           +VFKYK KK YRRNIGHRQ
Sbjct: 173 VVFKYKPKKKYRRNIGHRQ 191

This protein binds to 23S ribosomal RNA in the presence of protein L20.
Arabidopsis thaliana (taxid: 3702)

>sp|P24613|RK21_SPIOL 50S ribosomal protein L21, chloroplastic OS=Spinacia oleracea GN=RPL21 PE=1 SV=1

 Score =  149 bits (377), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 84/97 (86%), Positives = 90/97 (92%)

Query: 98  PKREEIFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVV 157
           P REEIFAVV+IGSRQYIV PGR+IYTQRLKGA VNDKI+LNKVLLVGTK +TYIG P+V
Sbjct: 118 PPREEIFAVVVIGSRQYIVIPGRWIYTQRLKGATVNDKIVLNKVLLVGTKASTYIGTPIV 177

Query: 158 TNAAVHAVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQ 194
           TNAAVHAVVEEQ L+ KVIVFKYKKKKNYRRNIGHRQ
Sbjct: 178 TNAAVHAVVEEQLLDDKVIVFKYKKKKNYRRNIGHRQ 214

This protein binds to 23S ribosomal RNA in the presence of protein L20.

Spinacia oleracea (taxid: 3562)

>sp|Q8L9A0|RM21_ARATH 50S ribosomal protein L21, mitochondrial OS=Arabidopsis thaliana GN=RPL21M PE=2 SV=1

 Score = 92.0 bits (227), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 50/94 (53%), Positives = 71/94 (75%)

Query: 101 EEIFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNA 160
           E +FA+V IGS Q+ V  G  I+T++LK  ++NDK+ L KVLL+G+ + T IG+P++ +A
Sbjct: 138 EPVFAIVQIGSHQFKVSNGDSIFTEKLKFCDINDKLELTKVLLLGSASQTIIGRPILPDA 197

Query: 161 AVHAVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQ 194
            VHAVVEE  L+ KV++FK K++KNYRR  GHRQ
Sbjct: 198 TVHAVVEEHALDEKVLIFKKKRRKNYRRTRGHRQ 231

This protein binds to 23S ribosomal RNA in the presence of protein L20.

Arabidopsis thaliana (taxid: 3702)

>sp|Q54IF0|RM21_DICDI Probable 39S ribosomal protein L21, mitochondrial OS=Dictyostelium discoideum GN=mrpl21 PE=3 SV=1

 Score = 89.4 bits (220), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 49/112 (43%), Positives = 69/112 (61%), Gaps = 1/112 (0%)

Query: 80  EAEAEPTTEVVESAAKEEPKREEIFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILN 139
           EA A  + E   S  +  P  ++ FAVV I  +QY V  G  I T +++  +V + I+L+
Sbjct: 38  EAVAVTSEESYNSKNQFTPIGKDSFAVVHISGKQYKVIEGDIIMTDKIQ-VDVGEHIVLD 96

Query: 140 KVLLVGTKTTTYIGKPVVTNAAVHAVVEEQGLNPKVIVFKYKKKKNYRRNIG 191
           KVLLVGTK  T IGKP+++N  VHA +EEQ     V +FK+K +KNY+R  G
Sbjct: 97  KVLLVGTKNETIIGKPIISNFKVHAYIEEQAKTEHVTIFKHKPRKNYKRTTG 148

Dictyostelium discoideum (taxid: 44689)

>sp|B8E0B4|RL21_DICTD 50S ribosomal protein L21 OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=rplU PE=3 SV=1

 Score = 86.3 bits (212), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 47/92 (51%), Positives = 61/92 (66%), Gaps = 1/92 (1%)

Query: 103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAV 162
           +F VV  G +QY V  G  +  ++LK ANV D+++L+KVLLVG +    IG+P V  A V
Sbjct: 1   MFVVVETGGKQYKVSVGSMVNVEKLK-ANVGDEVVLDKVLLVGKEDEVIIGQPYVEGAKV 59

Query: 163 HAVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQ 194
            A V  Q   PKVIVFK+K+KK+YRR  GHRQ
Sbjct: 60  IAKVVRQDKYPKVIVFKFKRKKHYRRKYGHRQ 91

This protein binds to 23S rRNA in the presence of protein L20.

Dictyoglomus turgidum (strain Z-1310 / DSM 6724) (taxid: 515635)

>sp|B5YEQ3|RL21_DICT6 50S ribosomal protein L21 OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=rplU PE=3 SV=1

 Score = 83.6 bits (205), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 45/92 (48%), Positives = 61/92 (66%), Gaps = 1/92 (1%)

Query: 103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAV 162
           +F VV  G +QY +  G  +  ++L+ ANV D+++L+KVLLVG      IG+P V  A V
Sbjct: 1   MFVVVETGGKQYKLSVGSTVRVEKLQ-ANVGDEVVLDKVLLVGKDDEVLIGQPYVEGAKV 59

Query: 163 HAVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQ 194
            A V +Q   PKVIVFK+K+KK+YRR  GHRQ
Sbjct: 60  IAEVVKQDKYPKVIVFKFKRKKHYRRKYGHRQ 91

This protein binds to 23S rRNA in the presence of protein L20.

Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) (taxid: 309799)

>sp|A0LPF7|RL21_SYNFM 50S ribosomal protein L21 OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=rplU PE=3 SV=1

 Score = 83.2 bits (204), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 39/92 (42%), Positives = 62/92 (67%), Gaps = 1/92 (1%)

Query: 103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAV 162
           ++AV+  G RQY V PG+ +  ++L G  V DK+ L++VLL    T   +G+PV+ N AV
Sbjct: 1   MYAVLKSGGRQYEVRPGQVVKVEKLLG-EVGDKVTLDQVLLFSDGTDIQVGQPVLANIAV 59

Query: 163 HAVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQ 194
              + EQG + K+++FK+K++K+YR+  GHRQ
Sbjct: 60  QGQIVEQGRHRKIVIFKHKRRKDYRKKQGHRQ 91

This protein binds to 23S rRNA in the presence of protein L20.

Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) (taxid: 335543)

>sp|Q2RL02|RL21_MOOTA 50S ribosomal protein L21 OS=Moorella thermoacetica (strain ATCC 39073) GN=rplU PE=3 SV=1

 Score = 82.8 bits (203), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 43/92 (46%), Positives = 58/92 (63%), Gaps = 1/92 (1%)

Query: 103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAV 162
           ++A++M G +QY V  G  +  ++L  A V +K++L+KVL VG      +G P V  A V
Sbjct: 1   MYAIIMTGGKQYRVSEGDTLRVEKLP-AEVGEKVVLDKVLAVGEGADLKVGNPYVEGAKV 59

Query: 163 HAVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQ 194
            A V+ Q   PK+IVFKYK KKNYRR  GHRQ
Sbjct: 60  TASVQAQDKAPKIIVFKYKPKKNYRRKQGHRQ 91

This protein binds to 23S rRNA in the presence of protein L20.

Moorella thermoacetica (strain ATCC 39073) (taxid: 264732)

>sp|A6LQR6|RL21_CLOB8 50S ribosomal protein L21 OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=rplU PE=3 SV=1

 Score = 82.8 bits (203), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 45/92 (48%), Positives = 59/92 (64%), Gaps = 1/92 (1%)

Query: 103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAV 162
           ++AV+  G +QY V  G  IY ++L  A+V+  + LN+VL VGT+    +G PVV  A V
Sbjct: 1   MYAVLATGGKQYRVQEGDVIYVEKLN-ADVDSTVELNEVLAVGTEEGIKVGAPVVEGAKV 59

Query: 163 HAVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQ 194
            A V  QG   KV+VFKYK KK+YRR  GHRQ
Sbjct: 60  VAKVAAQGKAKKVVVFKYKSKKDYRRKNGHRQ 91

This protein binds to 23S rRNA in the presence of protein L20.

Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) (taxid: 290402)

>sp|A5N6J9|RL21_CLOK5 50S ribosomal protein L21 OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=rplU PE=3 SV=1

 Score = 82.0 bits (201), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/92 (47%), Positives = 59/92 (64%), Gaps = 1/92 (1%)

Query: 103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAV 162
           ++AVV  G +QY V  G  IY ++L+ A V+  I L+KVL++       +GKPVV  A V
Sbjct: 1   MYAVVATGGKQYKVSEGDIIYVEKLE-AEVDSTIELDKVLMINKDEGLVVGKPVVEGAKV 59

Query: 163 HAVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQ 194
            A V +QG   K+IVFKYK KK+YR+  GHRQ
Sbjct: 60  KAKVLKQGKAKKIIVFKYKPKKDYRKKQGHRQ 91

This protein binds to 23S rRNA in the presence of protein L20.

Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) (taxid: 431943)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	200
118486114	225	unknown [Populus trichocarpa]	0.955	0.848	0.639	1e-59
224145182	206	predicted protein [Populus trichocarpa]	0.87	0.844	0.605	2e-56
255571748	214	50S ribosomal protein L21, putative [Ric	0.915	0.855	0.641	3e-51
224135915	227	predicted protein [Populus trichocarpa]	0.95	0.837	0.629	9e-46
225454186	209	PREDICTED: 50S ribosomal protein L21, ch	0.89	0.851	0.627	7e-44
297846634	215	50S ribosomal protein L21, chloroplast [	0.9	0.837	0.557	7e-44
15219695	220	50S ribosomal protein L21 [Arabidopsis t	0.91	0.827	0.567	9e-44
388502066	216	unknown [Lotus japonicus]	0.92	0.851	0.505	3e-39
388514731	216	unknown [Lotus japonicus]	0.92	0.851	0.5	4e-38
449463382	206	PREDICTED: 50S ribosomal protein L21, ch	0.485	0.470	0.917	1e-37

>gi|118486114|gb|ABK94900.1| unknown [Populus trichocarpa]

 Score =  234 bits (597), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 131/205 (63%), Positives = 152/205 (74%), Gaps = 14/205 (6%)

Query: 1   MAAASSCATLALCSSLTSHCKIS-CQNPNPHPQLSLSKSKLCSFP-------SPKLYT-R 51
           MAA+SS A +ALCSSLT+ CKIS  QNP     L LSK    SF        SP +++ R
Sbjct: 1   MAASSSTALMALCSSLTTQCKISKSQNPPLSKTLCLSKPNFGSFSNTTKKLSSPLIFSKR 60

Query: 52  PTFSFTHKFSQTEPPPVSEPEVEPEAAL-EAEAEPT-TEVVESAAKEEPKREEIFAVVMI 109
           PTF    K S++E P V   E E E  + EA  EP  T++VE A +E  KREEIFAVVM+
Sbjct: 61  PTFFARPKVSESEAPVV---EAETEVPVSEANPEPAATQIVEVAKEEPTKREEIFAVVMV 117

Query: 110 GSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVHAVVEEQ 169
           GSRQYIV PGR++Y QRLKGANVNDKI+LNKVLLVGT+T+ YIGKPVVTNA+VHAVVEEQ
Sbjct: 118 GSRQYIVIPGRWLYVQRLKGANVNDKIVLNKVLLVGTRTSAYIGKPVVTNASVHAVVEEQ 177

Query: 170 GLNPKVIVFKYKKKKNYRRNIGHRQ 194
           GL+ K IVFKYK+KKNYRRNIGHRQ
Sbjct: 178 GLDAKKIVFKYKRKKNYRRNIGHRQ 202

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145182|ref|XP_002325555.1| predicted protein [Populus trichocarpa] gi|222862430|gb|EEE99936.1| predicted protein [Populus trichocarpa]

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 123/203 (60%), Positives = 143/203 (70%), Gaps = 29/203 (14%)

Query: 1   MAAASSCATLALCSSLTSHCKIS-CQNPNPHPQLSLSKSKLCSFP-------SPKLYT-R 51
           MAA+SS A +ALCSSLT+ CKIS  QNP     L LSK    SF        SP +++ R
Sbjct: 1   MAASSSTALMALCSSLTTQCKISKSQNPPLSKTLCLSKPNFGSFSNTTKKLSSPLIFSKR 60

Query: 52  PTFSFTHKFSQTEPPPVSEPEVEPEAALEAEAEPTTEVVESAAKEEPKREEIFAVVMIGS 111
           PTF              + P+  PE A        T++VE A +E  KREEIFAVVM+GS
Sbjct: 61  PTF-------------FARPKANPEPA-------ATQIVEVAKEEPTKREEIFAVVMVGS 100

Query: 112 RQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVHAVVEEQGL 171
           RQYIV PGR++Y QRLKGANVNDKI+LNKVLLVGT+T+ YIGKPVVTNA+VHAVVEEQGL
Sbjct: 101 RQYIVIPGRWLYVQRLKGANVNDKIVLNKVLLVGTRTSAYIGKPVVTNASVHAVVEEQGL 160

Query: 172 NPKVIVFKYKKKKNYRRNIGHRQ 194
           + K IVFKYK+KKNYRRNIGHRQ
Sbjct: 161 DAKKIVFKYKRKKNYRRNIGHRQ 183

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255571748|ref|XP_002526817.1| 50S ribosomal protein L21, putative [Ricinus communis] gi|223533821|gb|EEF35552.1| 50S ribosomal protein L21, putative [Ricinus communis]

 Score =  207 bits (526), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 127/198 (64%), Positives = 144/198 (72%), Gaps = 15/198 (7%)

Query: 4   ASSCATLALCSSLTSHCKISCQNPNPHPQLSLSKSKLCSFP-------SPKLYTRPTFSF 56
           A++C TL+LCSS T+ C IS    NP+    +SK+   S P       S KL TRP+F  
Sbjct: 2   ATTCTTLSLCSSFTAQCTISNHKQNPN---FISKTHFSSNPKIGPFTKSHKLTTRPSFLP 58

Query: 57  THKFSQTEPPPVSEPEVEPEAALEAEAEPTTEVVESAAKEEPKREEIFAVVMIGSRQYIV 116
             K S+++ P +   EVE   A E + EP   V    AKEE KREEIFAVVM+G RQYIV
Sbjct: 59  ILKSSESDAPVL---EVEDANAPELQPEPAPFV--EVAKEETKREEIFAVVMVGGRQYIV 113

Query: 117 FPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVHAVVEEQGLNPKVI 176
            PGRFIY QRLKGANVNDK+ LNKVLLVGT+TTTYIGKPVVTNA VHAVVEEQGLNPKV+
Sbjct: 114 IPGRFIYVQRLKGANVNDKVALNKVLLVGTRTTTYIGKPVVTNAVVHAVVEEQGLNPKVV 173

Query: 177 VFKYKKKKNYRRNIGHRQ 194
           VFKYKKKKNYRRNIGHRQ
Sbjct: 174 VFKYKKKKNYRRNIGHRQ 191

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135915|ref|XP_002327335.1| predicted protein [Populus trichocarpa] gi|222835705|gb|EEE74140.1| predicted protein [Populus trichocarpa]

 Score =  188 bits (478), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 131/208 (62%), Positives = 151/208 (72%), Gaps = 18/208 (8%)

Query: 1   MAAASSCATLALCSSLTSHCKIS-CQNPNPHPQLSLSKSKLCSFP--------SPKLYT- 50
           MA +SS   +ALCSSLT+ CKIS  QNP     L LSK    SF         S  +++ 
Sbjct: 1   MATSSSTTLVALCSSLTTQCKISNAQNPPLSKSLCLSKPNSGSFSKTTQNLSSSSLIFSK 60

Query: 51  RPTFSFTH--KFSQTEPPPVSEPEVEPEAAL-EAEAEPT-TEVVESAAKEEPKREEIFAV 106
           RPTF F +  KFS++E   V   E EPE  + EA  EP  T++VE A +E PKREEIFAV
Sbjct: 61  RPTF-FANPPKFSESEALVV---EAEPEVPVSEANPEPAATQMVEVAKEEPPKREEIFAV 116

Query: 107 VMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVHAVV 166
           VM+GSRQYIV PGR++Y QRLKGANVNDK+ LNKVLLVGT+T+ YIGKPVVTNA VHAVV
Sbjct: 117 VMVGSRQYIVIPGRWLYVQRLKGANVNDKVNLNKVLLVGTRTSAYIGKPVVTNATVHAVV 176

Query: 167 EEQGLNPKVIVFKYKKKKNYRRNIGHRQ 194
           EEQGL+ K IVFKYKKKKNYRRNIGHRQ
Sbjct: 177 EEQGLDAKKIVFKYKKKKNYRRNIGHRQ 204

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225454186|ref|XP_002272295.1| PREDICTED: 50S ribosomal protein L21, chloroplastic [Vitis vinifera] gi|297745266|emb|CBI40346.3| unnamed protein product [Vitis vinifera]

 Score =  182 bits (462), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 123/196 (62%), Positives = 137/196 (69%), Gaps = 18/196 (9%)

Query: 6   SCATLAL-CSSLTSHCKISCQNPNPHPQLSLSKSKLCSFPSPKLYTRPTFSFTHKFSQTE 64
           + ATLA   SSLT    +S ++ +  P+ +LS S    F SP   T          S   
Sbjct: 2   ASATLAFFSSSLTPTATLSLKHKSSAPKKTLSFSNF-GFLSPHSLT---------LSSRR 51

Query: 65  PP---PVSEPEVEPEAALEAEAEPTTE---VVESAAKEEPKREEIFAVVMIGSRQYIVFP 118
           PP   P S  E EP       +EP +E   VVE    E PKREEIFAVVMIGSRQYIVFP
Sbjct: 52  PPSPLPKSS-EFEPSVIEVESSEPNSEALQVVEEPPPELPKREEIFAVVMIGSRQYIVFP 110

Query: 119 GRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVHAVVEEQGLNPKVIVF 178
           GR+IYTQRLKGA+VNDKIILN+VLLVGTKT+TYIGKPVV NAAVHAVVEEQGLNPKV+VF
Sbjct: 111 GRYIYTQRLKGADVNDKIILNRVLLVGTKTSTYIGKPVVPNAAVHAVVEEQGLNPKVMVF 170

Query: 179 KYKKKKNYRRNIGHRQ 194
           KYKKKKNYRRNIGHRQ
Sbjct: 171 KYKKKKNYRRNIGHRQ 186

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297846634|ref|XP_002891198.1| 50S ribosomal protein L21, chloroplast [Arabidopsis lyrata subsp. lyrata] gi|297337040|gb|EFH67457.1| 50S ribosomal protein L21, chloroplast [Arabidopsis lyrata subsp. lyrata]

 Score =  182 bits (462), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 112/201 (55%), Positives = 138/201 (68%), Gaps = 21/201 (10%)

Query: 4   ASSCATLALCSSLTSHCKISCQNPNPHPQLSLSKSKLCSFPSPKL--------YTRPTFS 55
           ASS ATL+LCS+ ++HC ++ +          S + LCS   P L        +  P+ +
Sbjct: 2   ASSSATLSLCSTFSAHCNVTSRR---------SSTILCSLSKPSLNLAKPVSGFLSPSTA 52

Query: 56  FTHKFSQTEPPPVSEP--EVEPEAALEAEAEPTTEVVESAAKEEPKREEIFAVVMIGSRQ 113
            T + + T  P  +E   E EPE   + EA   ++V E   +E+ KREEIFAVVM+G RQ
Sbjct: 53  STSRTAFTVAPKFAESVVEAEPETT-DIEAVVVSDVSE-VTEEKAKREEIFAVVMVGGRQ 110

Query: 114 YIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVHAVVEEQGLNP 173
           YIVFPGR++YTQRLK ANV+D+I+LNKVLLVGTKT TYIGKPVVTNA VHAVVE QGLN 
Sbjct: 111 YIVFPGRYLYTQRLKDANVDDQIVLNKVLLVGTKTHTYIGKPVVTNATVHAVVENQGLND 170

Query: 174 KVIVFKYKKKKNYRRNIGHRQ 194
           KV+VFKYK KK YRRNIGHRQ
Sbjct: 171 KVVVFKYKPKKKYRRNIGHRQ 191

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15219695|ref|NP_174808.1| 50S ribosomal protein L21 [Arabidopsis thaliana] gi|1710424|sp|P51412.1|RK21_ARATH RecName: Full=50S ribosomal protein L21, chloroplastic; AltName: Full=CL21; Flags: Precursor gi|8778379|gb|AAF79387.1|AC007887_46 F15O4.7 [Arabidopsis thaliana] gi|16226899|gb|AAL16293.1|AF428363_1 At1g35680/F15O4_7 [Arabidopsis thaliana] gi|1149573|emb|CAA89887.1| chloroplast ribosomal large subunit protein L21 [Arabidopsis thaliana] gi|14456036|emb|CAB59360.2| chloroplast ribosomal protein L21 [Arabidopsis thaliana] gi|16648685|gb|AAL25535.1| At1g35680/F15O4_7 [Arabidopsis thaliana] gi|21436001|gb|AAM51578.1| At1g35680/F15O4_7 [Arabidopsis thaliana] gi|332193702|gb|AEE31823.1| 50S ribosomal protein L21 [Arabidopsis thaliana]

 Score =  182 bits (461), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 113/199 (56%), Positives = 140/199 (70%), Gaps = 17/199 (8%)

Query: 4   ASSCATLALCSSLTSHCKISCQNPN------PHPQLSLSKSKLCSFPSPKL--YTRPTFS 55
           ASS ATL+LCS+ ++HC ++ +  +        P L+L+K  L  F SP     +R  F+
Sbjct: 2   ASSSATLSLCSTFSAHCNVNSRRSSTILCSLSKPSLNLAK-PLTGFLSPSTASTSRTAFT 60

Query: 56  FTHKFSQTEPPPVSEPEVEPEAALEAEAEPTTEVVESAAKEEPKREEIFAVVMIGSRQYI 115
              KF++      S  E EPE   + EA   ++V E   +E+ KREEIFAV+M+G RQYI
Sbjct: 61  VAPKFAE------SVVEAEPETT-DIEAVVVSDVSE-VTEEKAKREEIFAVIMVGGRQYI 112

Query: 116 VFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVHAVVEEQGLNPKV 175
           VFPGR++YTQRLK ANV+D+I+LNKVLLVGTKT TYIGKPVVTNA VHAVVE QGLN KV
Sbjct: 113 VFPGRYLYTQRLKDANVDDQIVLNKVLLVGTKTHTYIGKPVVTNATVHAVVESQGLNDKV 172

Query: 176 IVFKYKKKKNYRRNIGHRQ 194
           +VFKYK KK YRRNIGHRQ
Sbjct: 173 VVFKYKPKKKYRRNIGHRQ 191

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388502066|gb|AFK39099.1| unknown [Lotus japonicus]

 Score =  167 bits (422), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 100/198 (50%), Positives = 124/198 (62%), Gaps = 14/198 (7%)

Query: 1   MAAASSCATLALCSSLTSHCKISCQNPNPHPQLSLSKSKLCSFPS--PKLYTRPTFSFTH 58
           MA+A++  +  LC+S  +HC IS  +     +   S+S    FPS   KL  +P  +FT 
Sbjct: 1   MASATAIVS-TLCASFGTHCTISSTS-----KPLFSQSSTSRFPSHSNKLSLQPP-TFTQ 53

Query: 59  KFSQTEPPPVSEPEV-EPEAALEAEAEPTTEVVESAAKEEPKRE-EIFAVVMIGSRQYIV 116
           +F     P VSE  V EPE  +     P  E  E    + P  E  +FAVVM+G RQYIV
Sbjct: 54  RFPLLPLPKVSESAVAEPEIDVTT---PQPEAGEIVPAQPPSWEPGLFAVVMVGGRQYIV 110

Query: 117 FPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVHAVVEEQGLNPKVI 176
            PGR+I  QRLKGA  NDKI L KVLLVGT T+ YIGKP+V+NA V+A VEEQG +PKVI
Sbjct: 111 HPGRWIVVQRLKGAKANDKIALQKVLLVGTDTSCYIGKPIVSNAVVYATVEEQGFDPKVI 170

Query: 177 VFKYKKKKNYRRNIGHRQ 194
           VFKYK+KK YRR  GH+Q
Sbjct: 171 VFKYKRKKQYRRTYGHKQ 188

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388514731|gb|AFK45427.1| unknown [Lotus japonicus]

 Score =  163 bits (412), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 99/198 (50%), Positives = 124/198 (62%), Gaps = 14/198 (7%)

Query: 1   MAAASSCATLALCSSLTSHCKISCQNPNPHPQLSLSKSKLCSFPSP--KLYTRPTFSFTH 58
           MA+A++  +  LC+S  +HC IS  +     +   S+S    FPS   KL  +P  +FT 
Sbjct: 1   MASATAIVS-TLCASFGTHCTISSTS-----KPLFSQSSHSRFPSHSNKLSLQPP-TFTL 53

Query: 59  KFSQTEPPPVSEPEVEPEAALEAEAE-PTTEVVESAAKEEPKRE-EIFAVVMIGSRQYIV 116
           +F     P VSE  V   A LE +   P  E  E    + P  E  +FAVVM+G RQYIV
Sbjct: 54  RFPLLPFPKVSESAV---AELETDVTTPQPEAGEIVPAQPPSWEPGLFAVVMVGGRQYIV 110

Query: 117 FPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVHAVVEEQGLNPKVI 176
            PGR+I  QRLKGA  NDKI L KVLLVGT T+ YIGKP+V+N  V+A VEEQG +PKVI
Sbjct: 111 HPGRWIVVQRLKGAKANDKIALQKVLLVGTDTSCYIGKPIVSNTVVYATVEEQGFDPKVI 170

Query: 177 VFKYKKKKNYRRNIGHRQ 194
           VFKYK+KK+YRR  GH+Q
Sbjct: 171 VFKYKRKKHYRRTYGHKQ 188

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449463382|ref|XP_004149413.1| PREDICTED: 50S ribosomal protein L21, chloroplastic-like [Cucumis sativus] gi|449496845|ref|XP_004160241.1| PREDICTED: 50S ribosomal protein L21, chloroplastic-like [Cucumis sativus]

 Score =  161 bits (408), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 89/97 (91%), Positives = 93/97 (95%)

Query: 98  PKREEIFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVV 157
           P REEIFAVVMIGSRQYIVFPGR+I+TQRLKGA+VNDKI LNKVLLVGTKT TYIGKPVV
Sbjct: 87  PNREEIFAVVMIGSRQYIVFPGRYIHTQRLKGADVNDKITLNKVLLVGTKTQTYIGKPVV 146

Query: 158 TNAAVHAVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQ 194
           TNAAVHAVVEEQGL+ KVIVFKYKKKKNYRRNIGHRQ
Sbjct: 147 TNAAVHAVVEEQGLDDKVIVFKYKKKKNYRRNIGHRQ 183

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	200
TAIR|locus:2014711	220	RPL21C "chloroplast ribosomal	0.87	0.790	0.440	1.4e-30
TAIR|locus:2126699	270	NFD1 "NUCLEAR FUSION DEFECTIVE	0.47	0.348	0.425	3.3e-15
DICTYBASE|DDB_G0288799	172	mrpl21 "ribosomal protein L21,	0.355	0.412	0.486	1.2e-12
TIGR_CMR|GSU_3236	102	GSU_3236 "ribosomal protein L2	0.45	0.882	0.336	8.7e-08
WB|WBGene00023422	171	mrpl-21 [Caenorhabditis elegan	0.385	0.450	0.387	1.4e-07
TIGR_CMR|BA_4676	102	BA_4676 "ribosomal protein L21	0.45	0.882	0.304	7e-06
FB|FBgn0036853	201	mRpL21 "mitochondrial ribosoma	0.385	0.383	0.316	1.6e-05
TIGR_CMR|CBU_0385	115	CBU_0385 "ribosomal protein L2	0.455	0.791	0.282	1.9e-05
TIGR_CMR|DET_1325	132	DET_1325 "ribosomal protein L2	0.46	0.696	0.301	3.9e-05
TIGR_CMR|SPO_1990	193	SPO_1990 "ribosomal protein L2	0.325	0.336	0.358	0.00073

TAIR|locus:2014711 RPL21C "chloroplast ribosomal protein L21" [Arabidopsis thaliana (taxid:3702)]

 Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
 Identities = 78/177 (44%), Positives = 97/177 (54%)

Query:    19 HCKISCQNPNPHPQLSLSKSKLCSFPSPKL-YTRPTFSFTHKFSQTXXXXXXXXXXXXXX 77
             HC ++ +  +     SLSK  L +   P   +  P+ + T + + T              
Sbjct:    17 HCNVNSRRSSTI-LCSLSKPSL-NLAKPLTGFLSPSTASTSRTAFTVAPKFAESVVEAEP 74

Query:    78 XXXXXXXXXXXXXXXXXKEEPKREEIFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKII 137
                              +E+ KREEIFAV+M+G RQYIVFPGR++YTQRLK ANV+D+I+
Sbjct:    75 ETTDIEAVVVSDVSEVTEEKAKREEIFAVIMVGGRQYIVFPGRYLYTQRLKDANVDDQIV 134

Query:   138 LNKVLLVGTKTTTYIGKPVVTNAAVHAVVEEQGLNPXXXXXXXXXXXXXXXXXGHRQ 194
             LNKVLLVGTKT TYIGKPVVTNA VHAVVE QGLN                  GHRQ
Sbjct:   135 LNKVLLVGTKTHTYIGKPVVTNATVHAVVESQGLNDKVVVFKYKPKKKYRRNIGHRQ 191

GO:0003723 "RNA binding" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005840 "ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0009409 "response to cold" evidence=IEP;RCA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009658 "chloroplast organization" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0010027 "thylakoid membrane organization" evidence=RCA;IMP

GO:0006364 "rRNA processing" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2126699 NFD1 "NUCLEAR FUSION DEFECTIVE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
 Identities = 40/94 (42%), Positives = 57/94 (60%)

Query:   101 EEIFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNA 160
             E +FA+V IGS Q+ V  G  I+T++LK  ++NDK+ L KVLL+G+ + T IG+P++ +A
Sbjct:   138 EPVFAIVQIGSHQFKVSNGDSIFTEKLKFCDINDKLELTKVLLLGSASQTIIGRPILPDA 197

Query:   161 AVHAVVEEQGLNPXXXXXXXXXXXXXXXXXGHRQ 194
              VHAVVEE  L+                  GHRQ
Sbjct:   198 TVHAVVEEHALDEKVLIFKKKRRKNYRRTRGHRQ 231

GO:0003723 "RNA binding" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005840 "ribosome" evidence=ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0000741 "karyogamy" evidence=RCA;IMP

GO:0005739 "mitochondrion" evidence=IDA

GO:0009553 "embryo sac development" evidence=IMP

GO:0009555 "pollen development" evidence=IMP

GO:0009567 "double fertilization forming a zygote and endosperm" evidence=IMP

GO:0001510 "RNA methylation" evidence=RCA

GO:0006342 "chromatin silencing" evidence=RCA

GO:0006606 "protein import into nucleus" evidence=RCA

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

GO:0016572 "histone phosphorylation" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

DICTYBASE|DDB_G0288799 mrpl21 "ribosomal protein L21, mitochondrial" [Dictyostelium discoideum (taxid:44689)]

 Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 35/72 (48%), Positives = 49/72 (68%)

Query:    98 PKREEIFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVV 157
             P  ++ FAVV I  +QY V  G  I T +++  +V + I+L+KVLLVGTK  T IGKP++
Sbjct:    56 PIGKDSFAVVHISGKQYKVIEGDIIMTDKIQ-VDVGEHIVLDKVLLVGTKNETIIGKPII 114

Query:   158 TNAAVHAVVEEQ 169
             +N  VHA +EEQ
Sbjct:   115 SNFKVHAYIEEQ 126

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

TIGR_CMR|GSU_3236 GSU_3236 "ribosomal protein L21" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
 Identities = 31/92 (33%), Positives = 48/92 (52%)

Query:   103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAV 162
             ++AV+  G +QY V  G F+  ++L+GA V D + L  VL+VG +T   IG P+V +A+V
Sbjct:     1 MYAVIRTGGKQYKVSEGDFLKVEKLEGA-VGDTVELKDVLMVGGETVA-IGTPLVPSASV 58

Query:   163 HAVVEEQGLNPXXXXXXXXXXXXXXXXXGHRQ 194
                + +QG +                  GHRQ
Sbjct:    59 VGRIVDQGKDKKILVFKSKRRKNFRKMYGHRQ 90

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

WB|WBGene00023422 mrpl-21 [Caenorhabditis elegans (taxid:6239)]

 Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 31/80 (38%), Positives = 45/80 (56%)

Query:    97 EPKREEIFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPV 156
             E KR+ +FAVV +  RQ+ V  G  I  +     NV D+I L KVL+VG    +  G+P+
Sbjct:    55 EEKRQRLFAVVYVNGRQWKVSDGDLINMEGNLPLNVGDEIKLEKVLMVGGTNFSLFGRPL 114

Query:   157 VTNAAVHA---VVEEQGLNP 173
             +  +AV     VVE++  NP
Sbjct:   115 LDASAVTVDAVVVEKKTTNP 134

GO:0003723 "RNA binding" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0040010 "positive regulation of growth rate" evidence=IMP

TIGR_CMR|BA_4676 BA_4676 "ribosomal protein L21" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 104 (41.7 bits), Expect = 7.0e-06, P = 7.0e-06
 Identities = 28/92 (30%), Positives = 42/92 (45%)

Query:   103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAV 162
             ++A++  G +Q  V  G+ IY ++L      + +  +KVL VG +    +G PVV  A V
Sbjct:     1 MYAIIETGGKQIKVEAGQAIYIEKLD-VEAGETVTFDKVLFVGGENVK-VGSPVVEGATV 58

Query:   163 HAVVEEQGLNPXXXXXXXXXXXXXXXXXGHRQ 194
              A VE+QG                    GHRQ
Sbjct:    59 TAKVEKQGRAKKIIVFKYKAKKNNRKKQGHRQ 90

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

FB|FBgn0036853 mRpL21 "mitochondrial ribosomal protein L21" [Drosophila melanogaster (taxid:7227)]

 Score = 103 (41.3 bits), Expect = 1.6e-05, P = 1.6e-05
 Identities = 25/79 (31%), Positives = 44/79 (55%)

Query:    96 EEPKREEIFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKP 155
             ++ ++  +FAVV +  +Q+ V PG  I  +      + D+I L+KVLL G +  T +G+P
Sbjct:    71 QKSEQGRLFAVVHLCGKQFKVTPGDIILVEGYWPPTIGDEISLDKVLLAGARDFTLVGRP 130

Query:   156 VVTNAA--VHAVVEEQGLN 172
             ++      V A V E+ L+
Sbjct:   131 ILEPGLILVKATVVEKTLS 149

GO:0005762 "mitochondrial large ribosomal subunit" evidence=ISS

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

TIGR_CMR|CBU_0385 CBU_0385 "ribosomal protein L21" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 100 (40.3 bits), Expect = 1.9e-05, P = 1.9e-05
 Identities = 26/92 (28%), Positives = 42/92 (45%)

Query:   103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAV 162
             ++A++  G +QY V  G+ +  ++L   +V   +  + VL+V      +IG P V +AAV
Sbjct:     1 MYAIIKTGGKQYRVTEGQMLKVEKL-AQDVGQSVKFDDVLMVAAGDELHIGTPSVKDAAV 59

Query:   163 HAVVEEQGLNPXXXXXXXXXXXXXXXXXGHRQ 194
              A V +QG                    GHRQ
Sbjct:    60 TAEVVDQGRQAKIEIIKFKRRKHHMKRQGHRQ 91

GO:0003735 "structural constituent of ribosome" evidence=ISS

TIGR_CMR|DET_1325 DET_1325 "ribosomal protein L21" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 97 (39.2 bits), Expect = 3.9e-05, P = 3.9e-05
 Identities = 28/93 (30%), Positives = 38/93 (40%)

Query:   103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAV 162
             I+A++  G +QY V PG+ +       A   D I L+KVL++    T  IG P V  A V
Sbjct:     6 IYAIIESGGKQYKVTPGQLVEVDLFDLAE-GDSIELDKVLMLNDGETVTIGSPTVPGAKV 64

Query:   163 HAVVEEQGLNPXXXXXXXXXXXXXXXXXGHRQV 195
              A V                        GHRQ+
Sbjct:    65 TATVAGHIKGDKVFAYRFKAKSRNHKKTGHRQL 97

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0015934 "large ribosomal subunit" evidence=ISS

TIGR_CMR|SPO_1990 SPO_1990 "ribosomal protein L21" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 95 (38.5 bits), Expect = 0.00073, P = 0.00073
 Identities = 24/67 (35%), Positives = 38/67 (56%)

Query:   103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAV 162
             +FAV+  G +QY V  G  +  ++L  A+  +K+  N VL++G      +G P+V  AAV
Sbjct:     1 MFAVLKTGGKQYKVQAGDVLRVEKL-AADAGEKVQFNDVLMLGGDAPV-VGAPLVDGAAV 58

Query:   163 HAVVEEQ 169
              A V +Q
Sbjct:    59 QAEVIDQ 65


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.134   0.396    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      200       135   0.00091  102 3  11 22  0.41    31
                                                     30  0.44    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  544 (58 KB)
  Total size of DFA:  123 KB (2080 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.79u 0.10s 11.89t   Elapsed:  00:00:00
  Total cpu time:  11.79u 0.10s 11.89t   Elapsed:  00:00:00
  Start:  Mon May 20 20:50:01 2013   End:  Mon May 20 20:50:01 2013

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0042255 "ribosome assembly" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P51412	RK21_ARATH	No assigned EC number	0.5678	0.91	0.8272	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	200
pfam00829	96	pfam00829, Ribosomal_L21p, Ribosomal prokaryotic L	4e-39
PRK05573	103	PRK05573, rplU, 50S ribosomal protein L21; Validat	2e-33
COG0261	103	COG0261, RplU, Ribosomal protein L21 [Translation,	1e-29
CHL00075	108	CHL00075, rpl21, ribosomal protein L21	7e-24
TIGR00061	101	TIGR00061, L21, ribosomal protein L21	8e-23
PRK12278	221	PRK12278, PRK12278, 50S ribosomal protein L21/unkn	4e-18

>gnl|CDD|201461 pfam00829, Ribosomal_L21p, Ribosomal prokaryotic L21 protein

 Score =  129 bits (326), Expect = 4e-39
 Identities = 46/91 (50%), Positives = 57/91 (62%), Gaps = 1/91 (1%)

Query: 104 FAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVH 163
           +A++  G +QY V  G  I+ ++L  A V DKI  +KVLLVG      IGKP V  A V 
Sbjct: 2   YAIIETGGKQYKVEEGDVIFVEKL-DAEVGDKIEFDKVLLVGGDGKVKIGKPYVEGAKVK 60

Query: 164 AVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQ 194
           A V E G   KVIVFKYK++KNYR+  GHRQ
Sbjct: 61  AEVLEHGRGKKVIVFKYKRRKNYRKKQGHRQ 91

Length = 96

>gnl|CDD|235510 PRK05573, rplU, 50S ribosomal protein L21; Validated

 Score =  114 bits (288), Expect = 2e-33
 Identities = 42/91 (46%), Positives = 54/91 (59%), Gaps = 1/91 (1%)

Query: 104 FAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVH 163
           +A++  G +QY V  G  I  ++L  A V D +  ++VLLVG      IG P V  A V 
Sbjct: 2   YAIIKTGGKQYKVEEGDVIKVEKLD-AEVGDTVEFDEVLLVGGGEEVKIGAPYVEGAKVT 60

Query: 164 AVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQ 194
           A V E G   KVIVFKYK++KNYR+  GHRQ
Sbjct: 61  AEVVEHGRGKKVIVFKYKRRKNYRKKQGHRQ 91

Length = 103

>gnl|CDD|223339 COG0261, RplU, Ribosomal protein L21 [Translation, ribosomal structure and biogenesis]

 Score =  104 bits (263), Expect = 1e-29
 Identities = 40/91 (43%), Positives = 54/91 (59%), Gaps = 1/91 (1%)

Query: 104 FAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVH 163
           +A++  G +QY V  G  I  ++L  A   DK+  ++VL+VG      IG P V  A V 
Sbjct: 2   YAIIKTGGKQYKVEEGDVIKVEKL-DAEPGDKVEFDEVLMVGGGEEVKIGAPYVEGAKVT 60

Query: 164 AVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQ 194
           A V E G   KVI+FKYK++KNYR+  GHRQ
Sbjct: 61  AEVVEHGRGKKVIIFKYKRRKNYRKKQGHRQ 91

Length = 103

>gnl|CDD|177014 CHL00075, rpl21, ribosomal protein L21

 Score = 90.7 bits (226), Expect = 7e-24
 Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 1/91 (1%)

Query: 104 FAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVH 163
           +A++  G +Q  V PGRF             KI+LN+VLL+  ++   IGKP + NA V 
Sbjct: 4   YAIIEAGGKQLWVEPGRFYDINHFP-LEPGTKILLNRVLLIRNESEILIGKPWLENATVK 62

Query: 164 AVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQ 194
             +       K+ V+K + KK  R+  GHRQ
Sbjct: 63  GRILHHFRGKKITVYKMRPKKKTRKKQGHRQ 93

Length = 108

>gnl|CDD|129171 TIGR00061, L21, ribosomal protein L21

 Score = 87.8 bits (218), Expect = 8e-23
 Identities = 37/91 (40%), Positives = 54/91 (59%), Gaps = 1/91 (1%)

Query: 104 FAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVH 163
           +A+V IG +QY V  G+ +  ++L  A   D +  +KVL+V       IGKP V  A V 
Sbjct: 1   YAIVEIGGKQYKVEEGQTVRIEKLDAA-PGDTVEFDKVLMVNKGGDVKIGKPYVEGAKVV 59

Query: 164 AVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQ 194
           A VE+ G   KV V+KY+++K+ R+  GHRQ
Sbjct: 60  AEVEKHGRGKKVKVYKYRRRKHSRKKQGHRQ 90

Eubacterial and chloroplast [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 101

>gnl|CDD|237034 PRK12278, PRK12278, 50S ribosomal protein L21/unknown domain fusion protein; Provisional

 Score = 78.7 bits (194), Expect = 4e-18
 Identities = 34/92 (36%), Positives = 51/92 (55%), Gaps = 1/92 (1%)

Query: 103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAV 162
           +FAV+  G +QY V  G  +  ++L  A   + +   +VL++G      +G P V  AAV
Sbjct: 1   MFAVIKTGGKQYKVQAGDLLRVEKLA-AEAGETVQFGEVLMLGEGDNVTVGAPFVDGAAV 59

Query: 163 HAVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQ 194
            A V EQ    KVI FK +++++ RR  GHRQ
Sbjct: 60  QAEVIEQIKGDKVIHFKKRRRQSSRRTKGHRQ 91

Length = 221

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	200
CHL00075	108	rpl21 ribosomal protein L21	100.0
COG0261	103	RplU Ribosomal protein L21 [Translation, ribosomal	100.0
PRK05573	103	rplU 50S ribosomal protein L21; Validated	100.0
PF00829	96	Ribosomal_L21p: Ribosomal prokaryotic L21 protein;	100.0
TIGR00061	101	L21 ribosomal protein L21. Eubacterial and chlorop	100.0
PRK12278	221	50S ribosomal protein L21/unknown domain fusion pr	100.0
KOG1686	151	consensus Mitochondrial/chloroplast ribosomal L21	99.91
PF12791	56	RsgI_N: Anti-sigma factor N-terminus; InterPro: IP	88.37
PF11356	87	Pilus_PilP: Type IV pilus biogenesis; InterPro: IP	83.6

>CHL00075 rpl21 ribosomal protein L21

Probab=100.00  E-value=3.3e-42  Score=268.79  Aligned_cols=97  Identities=33%  Similarity=0.498  Sum_probs=94.1

Q ss_pred             CCeEEEEEECCEEEEEcCCCEEEEcccCCCCCCCeEEeeeEEEEecCCceEeccceecCcEEEEEEEeecCCCeEEEEEe
Q 028995          101 EEIFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVHAVVEEQGLNPKVIVFKY  180 (200)
Q Consensus       101 ~~mYAIIeiGGKQYkV~~Gd~I~VerL~~~e~Gd~I~l~~VLlvg~~~~t~vG~P~v~~a~V~AtVveh~kg~Ki~VfK~  180 (200)
                      +.|||||++|||||||++||+|.||+|+ +++|++|+|++|||+++++.+.+|.|||+||+|+|+|++|+||+||+||||
T Consensus         1 ~~myAIi~~gGkQykV~~Gd~i~vekl~-~~~G~~i~l~~VL~~~~~~~~~iG~P~v~~a~V~a~V~~h~r~~Ki~vfK~   79 (108)
T CHL00075          1 MMTYAIIEAGGKQLWVEPGRFYDINHFP-LEPGTKILLNRVLLIRNESEILIGKPWLENATVKGRILHHFRGKKITVYKM   79 (108)
T ss_pred             CcEEEEEEECCEEEEEeCCCEEEEEEcC-CCCCCEEEEEEEEEEecCCCeEECCcEecCcEEEEEEEeecCCCCEEEEEe
Confidence            3699999999999999999999999995 899999999999999988889999999999999999999999999999999


Q ss_pred             cCCCCcccccCCcCCccc
Q 028995          181 KKKKNYRRNIGHRQVKDL  198 (200)
Q Consensus       181 KrRK~yrRk~GHRQ~~T~  198 (200)
                      ||||+|||++||||+||+
T Consensus        80 krRK~yrrk~GHRQ~~T~   97 (108)
T CHL00075         80 RPKKKTRKKQGHRQKLTR   97 (108)
T ss_pred             CCCCCccCCCccCCCcEE
Confidence            999999999999999996

>COG0261 RplU Ribosomal protein L21 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=9.8e-42  Score=264.01  Aligned_cols=95  Identities=42%  Similarity=0.673  Sum_probs=93.3

Q ss_pred             eEEEEEECCEEEEEcCCCEEEEcccCCCCCCCeEEeeeEEEEecCCceEeccceecCcEEEEEEEeecCCCeEEEEEecC
Q 028995          103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVHAVVEEQGLNPKVIVFKYKK  182 (200)
Q Consensus       103 mYAIIeiGGKQYkV~~Gd~I~VerL~~~e~Gd~I~l~~VLlvg~~~~t~vG~P~v~~a~V~AtVveh~kg~Ki~VfK~Kr  182 (200)
                      |||||++|||||+|++||+|+||+|. +++|++|+||+|||+++++.+.||.|||+||+|.|+|++|+|++||++|||||
T Consensus         1 mYAii~tGGKQykV~~G~~i~vEkl~-~e~g~~v~f~~VL~v~~~~~v~iG~P~v~ga~V~aeV~~hgr~kKV~i~K~k~   79 (103)
T COG0261           1 MYAIIKTGGKQYKVEEGDVIKVEKLD-AEPGDKVEFDEVLMVGGGEEVKIGAPYVEGAKVTAEVVEHGRGKKVIIFKYKR   79 (103)
T ss_pred             CeEEEEECCEEEEEecCCEEEEEEcC-CCCCCEEEEEEEEEEcCCCceEECCceecCcEEEEEEhhhCCCceEEEEEecc
Confidence            99999999999999999999999995 89999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcccccCCcCCccc
Q 028995          183 KKNYRRNIGHRQVKDL  198 (200)
Q Consensus       183 RK~yrRk~GHRQ~~T~  198 (200)
                      ||+|+|++||||+||+
T Consensus        80 rK~~~rk~GHRQ~yT~   95 (103)
T COG0261          80 RKNYRKKQGHRQPYTR   95 (103)
T ss_pred             CcCcccccCcccceEE
Confidence            9999999999999996

>PRK05573 rplU 50S ribosomal protein L21; Validated

Probab=100.00  E-value=2.6e-41  Score=261.37  Aligned_cols=95  Identities=44%  Similarity=0.685  Sum_probs=93.3

Q ss_pred             eEEEEEECCEEEEEcCCCEEEEcccCCCCCCCeEEeeeEEEEecCCceEeccceecCcEEEEEEEeecCCCeEEEEEecC
Q 028995          103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVHAVVEEQGLNPKVIVFKYKK  182 (200)
Q Consensus       103 mYAIIeiGGKQYkV~~Gd~I~VerL~~~e~Gd~I~l~~VLlvg~~~~t~vG~P~v~~a~V~AtVveh~kg~Ki~VfK~Kr  182 (200)
                      |||||++||+||||++||+|.||+|+ +++||+|+|++|||+++++.+.+|+|||++|+|+|+|++|+|++||++|||||
T Consensus         1 MyAIi~~gGkQykV~~Gd~i~v~~l~-~~~G~~i~l~~VL~~~~~~~~~iG~P~l~~a~V~A~V~~~~k~~Ki~vfK~kr   79 (103)
T PRK05573          1 MYAIIKTGGKQYKVEEGDVIKVEKLD-AEVGDTVEFDEVLLVGGGEEVKIGAPYVEGAKVTAEVVEHGRGKKVIVFKYKR   79 (103)
T ss_pred             CEEEEEECCEEEEEeCCCEEEEcccC-CCCCCEEEEeEEEEEeCCCCEEECCeEcCCCEEEEEEEeccCCCcEEEEEEcC
Confidence            89999999999999999999999995 89999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcccccCCcCCccc
Q 028995          183 KKNYRRNIGHRQVKDL  198 (200)
Q Consensus       183 RK~yrRk~GHRQ~~T~  198 (200)
                      ||+|+|++||||+||+
T Consensus        80 RK~y~r~~GHRQ~~T~   95 (103)
T PRK05573         80 RKNYRKKQGHRQPYTK   95 (103)
T ss_pred             CCCccccCCccCCcEE
Confidence            9999999999999996

>PF00829 Ribosomal_L21p: Ribosomal prokaryotic L21 protein; InterPro: IPR001787 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=1.1e-41  Score=260.02  Aligned_cols=95  Identities=47%  Similarity=0.726  Sum_probs=92.8

Q ss_pred             eEEEEEECCEEEEEcCCCEEEEcccCCCCCCCeEEeeeEEEEecCCceEeccceecCcEEEEEEEeecCCCeEEEEEecC
Q 028995          103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVHAVVEEQGLNPKVIVFKYKK  182 (200)
Q Consensus       103 mYAIIeiGGKQYkV~~Gd~I~VerL~~~e~Gd~I~l~~VLlvg~~~~t~vG~P~v~~a~V~AtVveh~kg~Ki~VfK~Kr  182 (200)
                      |||||++||+||+|++||+|+||+| ++++||+|+|++||++++++++.+|+|||++|+|+|+|++|+|++|+++|||||
T Consensus         1 myAIi~~ggkQykV~~gd~i~v~~l-~~~~G~~i~l~~VL~~~~~~~~~iG~P~l~~a~V~a~V~~~~k~~Ki~v~K~kr   79 (96)
T PF00829_consen    1 MYAIIEIGGKQYKVEEGDVIDVERL-DAEVGDKIELDKVLLIGSEDFTLIGRPYLEGAKVEATVLEHGKGKKIIVFKKKR   79 (96)
T ss_dssp             -EEEEESSSEEEEESSSEEEEEEST-SSSTTSEEEETTEEEEETSSSTCSSSSSSSSSEEEEEEEEEEEEEEEEEEEEET
T ss_pred             CEEEEEECCEEEEEeCCCEEEECCc-CcCCCCEEEEEEEEEEecCCCeEECCccCCCcEEEEEEEeccCCCcEEEEEECC
Confidence            9999999999999999999999999 699999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcccccCCcCCccc
Q 028995          183 KKNYRRNIGHRQVKDL  198 (200)
Q Consensus       183 RK~yrRk~GHRQ~~T~  198 (200)
                      ||+|+|++||||+||+
T Consensus        80 RK~y~r~~GhRq~~T~   95 (96)
T PF00829_consen   80 RKRYRRKQGHRQPYTR   95 (96)
T ss_dssp             TTTEEEEEEEEEEEEE
T ss_pred             ccccccCCccCCCeEE
Confidence            9999999999999996

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L21 is one of the proteins from the large ribosomal subunit. In Escherichia coli, L21 is known to bind to the 23S rRNA in the presence of L20. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities, groups: Bacterial L21. Marchantia polymorpha chloroplast L21. Cyanelle L21. Plant chloroplast L21 (nuclear-encoded). Bacterial L21 is a protein of about 100 amino-acid residues, the mature form of the spinach chloroplast L21 has 200 residues.; GO: 0003723 RNA binding, 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2XG0_V 2X9S_V 2XG2_V 3UZ1_2 2Y19_V 2WDL_V 3V23_V 2WRO_V 2WRL_V 2Y11_V ....

>TIGR00061 L21 ribosomal protein L21

Probab=100.00  E-value=1.2e-40  Score=257.14  Aligned_cols=94  Identities=39%  Similarity=0.597  Sum_probs=92.2

Q ss_pred             EEEEEECCEEEEEcCCCEEEEcccCCCCCCCeEEeeeEEEEecCCceEeccceecCcEEEEEEEeecCCCeEEEEEecCC
Q 028995          104 FAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVHAVVEEQGLNPKVIVFKYKKK  183 (200)
Q Consensus       104 YAIIeiGGKQYkV~~Gd~I~VerL~~~e~Gd~I~l~~VLlvg~~~~t~vG~P~v~~a~V~AtVveh~kg~Ki~VfK~KrR  183 (200)
                      ||||++|||||||++||+|.||+|+ +++||.|+|++|||+++++.+.+|+|+|+||+|+|+|++|+||+||++||||||
T Consensus         1 yAIi~~gGkQykV~~Gd~i~Ve~l~-~~~G~~i~l~~VLlv~~~~~~~iG~P~l~~a~V~a~V~~~~r~~Ki~vfK~krr   79 (101)
T TIGR00061         1 YAIVEIGGKQYKVEEGQTVRIEKLD-AAPGDTVEFDKVLMVNKGGDVKIGKPYVEGAKVVAEVEKHGRGKKVKVYKYRRR   79 (101)
T ss_pred             CEEEEECCEEEEEeCCCEEEEcccC-CCCCCEEEEEEEEEEecCCCeEECCeEcCCCEEEEEEEeecCCCCEEEEEeCCC
Confidence            8999999999999999999999995 899999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccccCCcCCccc
Q 028995          184 KNYRRNIGHRQVKDL  198 (200)
Q Consensus       184 K~yrRk~GHRQ~~T~  198 (200)
                      |+|||++||||+||+
T Consensus        80 K~y~r~~GHRQ~~T~   94 (101)
T TIGR00061        80 KHSRKKQGHRQPYTK   94 (101)
T ss_pred             CCccCCCccCCCcEE
Confidence            999999999999996

Eubacterial and chloroplast.

>PRK12278 50S ribosomal protein L21/unknown domain fusion protein; Provisional

Probab=100.00  E-value=6.1e-39  Score=276.52  Aligned_cols=95  Identities=37%  Similarity=0.590  Sum_probs=93.1

Q ss_pred             eEEEEEECCEEEEEcCCCEEEEcccCCCCCCCeEEeeeEEEEecCCceEeccceecCcEEEEEEEeecCCCeEEEEEecC
Q 028995          103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVHAVVEEQGLNPKVIVFKYKK  182 (200)
Q Consensus       103 mYAIIeiGGKQYkV~~Gd~I~VerL~~~e~Gd~I~l~~VLlvg~~~~t~vG~P~v~~a~V~AtVveh~kg~Ki~VfK~Kr  182 (200)
                      |||||++|||||||++||+|.||+|. .++||+|.|++|||+++++.+.||+|||+|++|+|+|++|+||+||+||||||
T Consensus         1 MyAVI~~gGKQykV~~Gd~i~Vekl~-~~~G~~i~~~~VL~v~~~~~~~iG~P~v~~a~V~A~V~~~~kg~Ki~vfK~kr   79 (221)
T PRK12278          1 MFAVIKTGGKQYKVQAGDLLRVEKLA-AEAGETVQFGEVLMLGEGDNVTVGAPFVDGAAVQAEVIEQIKGDKVIHFKKRR   79 (221)
T ss_pred             CEEEEEeCCEEEEEeCCCEEEEeccC-CCCCCEEEEeEEEEEecCCCeEECCeEecCCEEEEEEEeecCCCCEEEEEeCC
Confidence            99999999999999999999999995 79999999999999998899999999999999999999999999999999999


Q ss_pred             CCCcccccCCcCCccc
Q 028995          183 KKNYRRNIGHRQVKDL  198 (200)
Q Consensus       183 RK~yrRk~GHRQ~~T~  198 (200)
                      ||+|||++||||+||+
T Consensus        80 RK~yrrk~GHRQ~~T~   95 (221)
T PRK12278         80 RQSSRRTKGHRQLLTL   95 (221)
T ss_pred             CCCcccCCCcCCCcEE
Confidence            9999999999999996

>KOG1686 consensus Mitochondrial/chloroplast ribosomal L21 protein [Translation, ribosomal structure and biogenesis]

Probab=99.91  E-value=1.8e-24  Score=176.42  Aligned_cols=101  Identities=54%  Similarity=0.647  Sum_probs=98.2

Q ss_pred             CCCCCeEEEEEECCEEEEEcCCCEEEEcccCCCCCCCeEEeeeEEEEecCCceEeccceecCcEEEEEEEeecCCCeEEE
Q 028995           98 PKREEIFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVHAVVEEQGLNPKVIV  177 (200)
Q Consensus        98 ~~~~~mYAIIeiGGKQYkV~~Gd~I~VerL~~~e~Gd~I~l~~VLlvg~~~~t~vG~P~v~~a~V~AtVveh~kg~Ki~V  177 (200)
                      ..+...||||.+||+||+|..||.|+.+++++.++||.|.|++|||+|+.+++.+|+|.|++++|.|.|++|++..|+++
T Consensus        21 ~kr~~~favv~v~srq~kvs~gd~iy~eg~~p~nv~d~i~l~kVlLvg~~~~T~~grpvv~~vtv~aVv~e~g~~~kvvh  100 (151)
T KOG1686|consen   21 IKRPSGFAVVSVGSRQRKVSSGDTIYTEGLKPKNVLDSIPLPKVLLVGPVEETRIGRPVVKKVTVHAVVEEYGLLFKVVH  100 (151)
T ss_pred             cccCCccEEEEEcceeEEecCCCeeeecCccccccccccccceEEEecCcceeEecCcccccceEEEEeeeccccccEEE
Confidence            56889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCCcccccCCcCCccc
Q 028995          178 FKYKKKKNYRRNIGHRQVKDL  198 (200)
Q Consensus       178 fK~KrRK~yrRk~GHRQ~~T~  198 (200)
                      ||+|++|.|||.+||||..|+
T Consensus       101 fk~k~~k~tr~~~~~~qe~t~  121 (151)
T KOG1686|consen  101 FKSKQWKVTRRDLGHRQEATE  121 (151)
T ss_pred             EEecchhhhhhhhcccCcccE
Confidence            999999999999999998875

>PF12791 RsgI_N: Anti-sigma factor N-terminus; InterPro: IPR024449 The heat shock genes in Bacillus subtilis can be classified into several groups according to their regulation [], and the sigma gene, sigI, of Bacillus subtilis belongs to the group IV heat-shock response genes and has many orthologues in the bacterial phylum Firmicutes []

Probab=88.37  E-value=0.95  Score=30.68  Aligned_cols=37  Identities=24%  Similarity=0.475  Sum_probs=30.3

Q ss_pred             CCeEEEEEECCEEEEEcCCCEEEEcccCCCCCCCeEEeeeEEEE
Q 028995          101 EEIFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLV  144 (200)
Q Consensus       101 ~~mYAIIeiGGKQYkV~~Gd~I~VerL~~~e~Gd~I~l~~VLlv  144 (200)
                      .+.||||.+.       .|+++.|.+-.+.++|++|.|+..-..
T Consensus         4 ~~~~aiVlT~-------dGeF~~ik~~~~~~vG~eI~~~~~~~~   40 (56)
T PF12791_consen    4 KKKYAIVLTP-------DGEFIKIKRKPGMEVGQEIEFDEKDII   40 (56)
T ss_pred             cCCEEEEEcC-------CCcEEEEeCCCCCcccCEEEEechhhc
Confidence            4568888886       688999999888999999999875444

Regulation of sigma factor I is carried out by RsgI from the same operon. This entry represents the N-terminal cytoplasmic portion of RsgI ('upstream' of the single transmembrane helix) which has been shown to interact directly with Sigma-I [].

>PF11356 Pilus_PilP: Type IV pilus biogenesis; InterPro: IPR022753 Type IV pili are required for auto-agglutination, twitching motility, biofilm formation, adherence and DNA uptake during transformation []

Probab=83.60  E-value=1.7  Score=31.48  Aligned_cols=40  Identities=23%  Similarity=0.153  Sum_probs=28.3

Q ss_pred             CCCCCeEEEEE-ECCEEEEEcCCCEEE--EcccCCCCCCCeEEeeeEEE
Q 028995           98 PKREEIFAVVM-IGSRQYIVFPGRFIY--TQRLKGANVNDKIILNKVLL  143 (200)
Q Consensus        98 ~~~~~mYAIIe-iGGKQYkV~~Gd~I~--VerL~~~e~Gd~I~l~~VLl  143 (200)
                      ......+|||+ .+|.|+.+..||.|.  =-+|.      .|.-|.|++
T Consensus        36 ~~~~~~~Aii~~~~~~~~~~~~Gd~i~~~g~~v~------~I~~d~Vvl   78 (87)
T PF11356_consen   36 GGGGRSSAIIRPSGGEQRTYRVGDTIPGSGWTVK------SISPDRVVL   78 (87)
T ss_dssp             SCSSS-EEEEE-CTTEEEEE-TTEE-SSSSEEEE------EEETTEEEE
T ss_pred             cCCCceEEEEEeCCCcEEEEECcCEeCCCCEEEE------EEeCCEEEE
Confidence            35678999999 999999999999975  33443      466677777

PilP is an inner membrane protein, required for pilus expression and transformation []. PilP interacts with PilQ which suggests that the two proteins may have coordinated activity in functions such as pilus extrusion/retraction []. ; PDB: 3OSS_C 2LNV_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	200
3bbo_T	257	Homology Model For The Spinach Chloroplast 50s Subu		7e-31

>pdb|3BBO|T Chain T, Homology Model For The Spinach Chloroplast 50s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 257

Iteration: 1
 Score =  129 bits (325), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 65/97 (67%), Positives = 72/97 (74%)
Query: 98  PKREEIFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVV 157
           P+ E IFAVV+IGSRQYIV PGR+IYTQRLKGA VNDKI+LNKVLLVGTK +TYIG P+V
Sbjct: 119 PREEIIFAVVVIGSRQYIVIPGRWIYTQRLKGATVNDKIVLNKVLLVGTKASTYIGTPIV 178
Query: 158 TNAAVHAVVEEQGLNPXXXXXXXXXXXXXXXXXGHRQ 194
           TNAAVHAVVEEQ L+                  GHRQ
Sbjct: 179 TNAAVHAVVEEQLLDDKVIVFKYKKKKNYRRNIGHRQ 215

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	200
3bbo_T	257	Ribosomal protein L21; large ribosomal subunit, sp	1e-40
3r8s_R	103	50S ribosomal protein L21; protein biosynthesis, R	1e-30
3v2d_V	101	50S ribosomal protein L21; ribosome associated inh	8e-30
2zjr_O	100	50S ribosomal protein L21; ribosome, large ribosom	8e-29

>3bbo_T Ribosomal protein L21; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Length = 257

 Score =  137 bits (346), Expect = 1e-40
 Identities = 101/214 (47%), Positives = 117/214 (54%), Gaps = 24/214 (11%)

Query: 5   SSCATLALCSSLTSHCKISC-QNPNPHPQLSLSKSKLCSFPSPKLY---------TRPTF 54
           +S      CSSL +  K+    NP       LSK        P L           R  F
Sbjct: 2   ASATLAFSCSSLCATLKLPQNLNPLLLNVPPLSKPFSGVVSPPSLSRLSLLPVAAKRRRF 61

Query: 55  SFTHKFSQTEPPPVSEPEVE--------------PEAALEAEAEPTTEVVESAAKEEPKR 100
               +  + E      P  +              PE       +   + +       P+ 
Sbjct: 62  QEIPEELKAEFEEFQRPPNQKPQLSDVLPDDFQAPEPGTPEYNDIINQFLPKKGPPPPRE 121

Query: 101 EEIFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNA 160
           E IFAVV+IGSRQYIV PGR+IYTQRLKGA VNDKI+LNKVLLVGTK +TYIG P+VTNA
Sbjct: 122 EIIFAVVVIGSRQYIVIPGRWIYTQRLKGATVNDKIVLNKVLLVGTKASTYIGTPIVTNA 181

Query: 161 AVHAVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQ 194
           AVHAVVEEQ L+ KVIVFKYKKKKNYRRNIGHRQ
Sbjct: 182 AVHAVVEEQLLDDKVIVFKYKKKKNYRRNIGHRQ 215

>3r8s_R 50S ribosomal protein L21; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1vs8_R 1vs6_R 2aw4_R 2awb_R 1vt2_R 2i2v_R 2j28_R 2i2t_R* 2qao_R* 2qba_R* 2qbc_R* 2qbe_R 2qbg_R 2qbi_R* 2qbk_R* 2qov_R 2qox_R 2qoz_R* 2qp1_R* 2rdo_R ... Length = 103

 Score =  107 bits (269), Expect = 1e-30
 Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 1/91 (1%)

Query: 104 FAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVH 163
           +AV   G +Q+ V  G+ +  ++L      + +   +VL++       IG P V    + 
Sbjct: 2   YAVFQSGGKQHRVSEGQTVRLEKLD-IATGETVEFAEVLMIANGEEVKIGVPFVDGGVIK 60

Query: 164 AVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQ 194
           A V   G   KV + K++++K+YR+  GHRQ
Sbjct: 61  AEVVAHGRGEKVKIVKFRRRKHYRKQQGHRQ 91

>3v2d_V 50S ribosomal protein L21; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_P 2hgj_U 2hgq_U 2hgu_U 1vsa_P 2j03_V 2jl6_V 2jl8_V 2v47_V 2v49_V 2wdi_V 2wdj_V 2wdl_V 2wdn_V 2wh2_V 2wh4_V 2wrj_V 2wrl_V 2wro_V 2wrr_V ... Length = 101

 Score =  104 bits (263), Expect = 8e-30
 Identities = 38/91 (41%), Positives = 50/91 (54%), Gaps = 3/91 (3%)

Query: 104 FAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVH 163
           FA+V  G +QY V PG  +  ++L  A     + L  +LL G KT   +G PVV  A+V 
Sbjct: 2   FAIVKTGGKQYRVEPGLKLRVEKLD-AEPGATVELPVLLLGGEKTV--VGTPVVEGASVV 58

Query: 164 AVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQ 194
           A V   G   K++V K+K K  YRR  GHRQ
Sbjct: 59  AEVLGHGRGKKILVSKFKAKVQYRRKKGHRQ 89

>2zjr_O 50S ribosomal protein L21; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.155.1.1 PDB: 1nwx_P* 1nwy_P* 1pnu_P 1pny_P 1sm1_P* 1vor_S 1vou_S 1vow_S 1voy_S 1vp0_S 1xbp_P* 1yl3_2 2b66_V 2b9n_V 2b9p_V 2zjp_O* 2zjq_O 1nkw_P 3cf5_O* 3dll_O* ... Length = 100

 Score =  102 bits (257), Expect = 8e-29
 Identities = 30/91 (32%), Positives = 42/91 (46%), Gaps = 4/91 (4%)

Query: 104 FAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVH 163
           FA++  G +QY V  G  I  + L+     DK+ L  + + G +T   +         V 
Sbjct: 2   FAIIQTGGKQYRVSEGDVIRVESLQ-GEAGDKVELKALFVGGEQT---VFGEDAGKYTVQ 57

Query: 164 AVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQ 194
           A V E G   K+ + KYK    YRR  GHRQ
Sbjct: 58  AEVVEHGRGKKIYIRKYKSGVQYRRRTGHRQ 88

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	200
3bbo_T	257	Ribosomal protein L21; large ribosomal subunit, sp	100.0
3r8s_R	103	50S ribosomal protein L21; protein biosynthesis, R	100.0
3v2d_V	101	50S ribosomal protein L21; ribosome associated inh	100.0
2zjr_O	100	50S ribosomal protein L21; ribosome, large ribosom	100.0

>3bbo_T Ribosomal protein L21; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}

Probab=100.00  E-value=3.3e-56  Score=387.81  Aligned_cols=188  Identities=55%  Similarity=0.741  Sum_probs=94.4

Q ss_pred             HHHH-hhhcCcccccCCC-CCCCCCCCcccCCCCCCC-CCC-C-------cccCCCcccCcccC-----CCCCCC-----
Q 028995            9 TLAL-CSSLTSHCKISCQ-NPNPHPQLSLSKSKLCSF-PSP-K-------LYTRPTFSFTHKFS-----QTEPPP-----   67 (200)
Q Consensus         9 ~~~~-c~s~~~~c~~~~~-~~~~~~~~~~s~~~~~~~-~~t-~-------~~~r~~~~~~~~~~-----~~~~~~-----   67 (200)
                      +++| ||||++||+|+++ ||++..++.+|+|++|.+ |++ +       ..+|++|++.|+++     |++.++     
T Consensus         5 ~~~~~c~~~~~~~~~~~~~~~~~~~~~~~s~p~~~~~~~~~~~~~s~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (257)
T 3bbo_T            5 TLAFSCSSLCATLKLPQNLNPLLLNVPPLSKPFSGVVSPPSLSRLSLLPVAAKRRRFQEIPEELKAEFEEFQRPPNQKPQ   84 (257)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEEeeeccceeeeeccCCCCCccccccccCCccccccCCCcccccccccccccCcccccchhhhhhchhhhccccccCcc
Confidence            4677 9999999999999 888888888999999877 655 2       23599999999988     666521     


Q ss_pred             -C-CCCCCChhhhhhcccCCchHHH-HHh--hccCCCCC-CeEEEEEECCEEEEEcCCCEEEEcccCCCCCCCeEEeeeE
Q 028995           68 -V-SEPEVEPEAALEAEAEPTTEVV-ESA--AKEEPKRE-EIFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKV  141 (200)
Q Consensus        68 -~-~~~~~~~~~~~~~~~~p~~~~~-~~~--~~~~~~~~-~mYAIIeiGGKQYkV~~Gd~I~VerL~~~e~Gd~I~l~~V  141 (200)
                       + .+|+.  +++++|+---+.+++ ..+  +.+..++. .|||||++|||||||++||+|+||+|+++++||+|+|++|
T Consensus        85 ~~~~~p~~--~~~~~~~~~~~~e~~~~~~~~~~~~~k~~~~MYAIIetGGKQYKV~~GD~I~VEKL~~aevGd~V~LdkV  162 (257)
T 3bbo_T           85 LSDVLPDD--FQAPEPGTPEYNDIINQFLPKKGPPPPREEIIFAVVVIGSRQYIVIPGRWIYTQRLKGATVNDKIVLNKV  162 (257)
T ss_dssp             -----------------------------------------CCCCCCSSSCCCCCCTTCCCCCCCCTTSCTTCEEECTTC
T ss_pred             eeecCCCc--cCCcccccccccccccccccccccCCCcCCCeEEEEEECCEEEEEeCCCEEEEeCCCCCCCCCEEEEEEE
Confidence             1 22222  233344411123332 222  22433444 4999999999999999999999999977899999999999


Q ss_pred             EEEecCCceEeccceecCcEEEEEEEeecCCCeEEEEEecCCCCcccccCCcCCccc
Q 028995          142 LLVGTKTTTYIGKPVVTNAAVHAVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQVKDL  198 (200)
Q Consensus       142 Llvg~~~~t~vG~P~v~~a~V~AtVveh~kg~Ki~VfK~KrRK~yrRk~GHRQ~~T~  198 (200)
                      ||++++++++||.|||+|++|+|+|++|+||+||+||||||||+|||++||||+||+
T Consensus       163 LlVg~~d~t~VG~P~V~gAkV~AtVveh~KgkKIiVFK~KRRK~yRRk~GHRQ~~T~  219 (257)
T 3bbo_T          163 LLVGTKASTYIGTPIVTNAAVHAVVEEQLLDDKVIVFKYKKKKNYRRNIGHRQPITR  219 (257)
T ss_dssp             CCBCSSSCBCCSSSSCSSCCCEEECCCCCCCSCCCEEECCTTTTCCEEECCCCCCCC
T ss_pred             EEEeCCCCeEeCCcccCCCEEEEEEEeecCCCcEEEEEeCCCCCCcCCCCccCCcEE
Confidence            999999999999999999999999999999999999999999999999999999996

>3r8s_R 50S ribosomal protein L21; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1vs8_R 1vs6_R 2aw4_R 2awb_R 1vt2_R 2i2v_R 2j28_R 2i2t_R* 2qao_R* 2qba_R* 2qbc_R* 2qbe_R 2qbg_R 2qbi_R* 2qbk_R* 2qov_R 2qox_R 2qoz_R* 2qp1_R* 2rdo_R ...

Probab=100.00  E-value=5.1e-43  Score=270.08  Aligned_cols=95  Identities=27%  Similarity=0.473  Sum_probs=93.4

Q ss_pred             eEEEEEECCEEEEEcCCCEEEEcccCCCCCCCeEEeeeEEEEecCCceEeccceecCcEEEEEEEeecCCCeEEEEEecC
Q 028995          103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVHAVVEEQGLNPKVIVFKYKK  182 (200)
Q Consensus       103 mYAIIeiGGKQYkV~~Gd~I~VerL~~~e~Gd~I~l~~VLlvg~~~~t~vG~P~v~~a~V~AtVveh~kg~Ki~VfK~Kr  182 (200)
                      |||||++|||||+|++||+|+||+|+ +++||+|+|++|||+++++++.+|.|||++|+|+|+|++|+|++||+||||||
T Consensus         1 MyAIi~~gGkQykV~~Gd~i~vekl~-~~~G~~v~~~~VLlv~~~~~~~iG~P~v~~a~V~a~V~~~~k~~Kv~vfK~kr   79 (103)
T 3r8s_R            1 MYAVFQSGGKQHRVSEGQTVRLEKLD-IATGETVEFAEVLMIANGEEVKIGVPFVDGGVIKAEVVAHGRGEKVKIVKFRR   79 (103)
T ss_dssp             CEEEEECSSSEEEEETTCEEEESCCC-SCTTCEEEECCEEEEESSSEEECSSSSCTTCEEEEEEEEEEECCCEEEEEEET
T ss_pred             CEEEEEECCEEEEEeCCCEEEECCcC-CCCCCEEEEeEEEEEecCCCEEECCcccCCcEEEEEEEeccCCCcEEEEEecC
Confidence            99999999999999999999999995 89999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcccccCCcCCccc
Q 028995          183 KKNYRRNIGHRQVKDL  198 (200)
Q Consensus       183 RK~yrRk~GHRQ~~T~  198 (200)
                      ||+|||++||||+||+
T Consensus        80 rK~yrrk~GHRQ~~T~   95 (103)
T 3r8s_R           80 RKHYRKQQGHRQWFTD   95 (103)
T ss_dssp             TTTEEEEEEECCEEEE
T ss_pred             CCCccCCCcccCCeEE
Confidence            9999999999999996

>3v2d_V 50S ribosomal protein L21; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_P 2hgj_U 2hgq_U 2hgu_U 1vsa_P 2j03_V 2jl6_V 2jl8_V 2v47_V 2v49_V 2wdi_V 2wdj_V 2wdl_V 2wdn_V 2wh2_V 2wh4_V 2wrj_V 2wrl_V 2wro_V 2wrr_V ...

Probab=100.00  E-value=5e-42  Score=263.91  Aligned_cols=93  Identities=41%  Similarity=0.596  Sum_probs=90.1

Q ss_pred             eEEEEEECCEEEEEcCCCEEEEcccCCCCCCCeEEeeeEEEEecCCceEeccceecCcEEEEEEEeecCCCeEEEEEecC
Q 028995          103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVHAVVEEQGLNPKVIVFKYKK  182 (200)
Q Consensus       103 mYAIIeiGGKQYkV~~Gd~I~VerL~~~e~Gd~I~l~~VLlvg~~~~t~vG~P~v~~a~V~AtVveh~kg~Ki~VfK~Kr  182 (200)
                      |||||++|||||+|++||+|+||+|+ +++||+|+|+ |||+++++ +.+|.|+|++|+|+|+|++|+|++||++|||||
T Consensus         1 MyAIi~~gGkQykV~~Gd~i~vekl~-~~~G~~v~~~-VLlv~~~~-~~iG~P~v~~a~V~a~V~~~~k~~Kv~vfK~kr   77 (101)
T 3v2d_V            1 MFAIVKTGGKQYRVEPGLKLRVEKLD-AEPGATVELP-VLLLGGEK-TVVGTPVVEGASVVAEVLGHGRGKKILVSKFKA   77 (101)
T ss_dssp             CEEEEEETTEEEEECTTCEEEESCCS-CCTTCEEEEC-EEEEESSS-CEECSSSCSSCCEEEEEEEEEECCCEEEEEEET
T ss_pred             CEEEEEeCCEEEEEeCCCEEEECCcC-CCCCCEEEEE-EEEECCCc-eEECCcccCCCEEEEEEeeccCCCcEEEEEECC
Confidence            99999999999999999999999995 8999999999 99998654 999999999999999999999999999999999


Q ss_pred             CCCcccccCCcCCccc
Q 028995          183 KKNYRRNIGHRQVKDL  198 (200)
Q Consensus       183 RK~yrRk~GHRQ~~T~  198 (200)
                      ||+|||++||||+||+
T Consensus        78 rK~yrrk~GHRQ~~T~   93 (101)
T 3v2d_V           78 KVQYRRKKGHRQPYTE   93 (101)
T ss_dssp             TTTEEEEEEECCEEEE
T ss_pred             CCCcCCCCcccCCeEE
Confidence            9999999999999996

>2zjr_O 50S ribosomal protein L21; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.155.1.1 PDB: 1nwx_P* 1nwy_P* 1pnu_P 1pny_P 1sm1_P* 1vor_S 1vou_S 1vow_S 1voy_S 1vp0_S 1xbp_P* 1yl3_2 2b66_V 2b9n_V 2b9p_V 2zjp_O* 2zjq_O 1nkw_P 3cf5_O* 3dll_O* ...

Probab=100.00  E-value=2e-41  Score=260.01  Aligned_cols=92  Identities=36%  Similarity=0.548  Sum_probs=86.2

Q ss_pred             eEEEEEECCEEEEEcCCCEEEEcccCCCCCCCeEEeeeEEEEecCCceEeccceecCcEEEEEEEeecCCCeEEEEEecC
Q 028995          103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVHAVVEEQGLNPKVIVFKYKK  182 (200)
Q Consensus       103 mYAIIeiGGKQYkV~~Gd~I~VerL~~~e~Gd~I~l~~VLlvg~~~~t~vG~P~v~~a~V~AtVveh~kg~Ki~VfK~Kr  182 (200)
                      |||||++|||||||++||+|+||+|+ +++||+|+|+ |||+++ +++.+|.| |++|+|+|+|++|+|++|+++|||||
T Consensus         1 myAIi~~gGkQykV~~Gd~i~vekl~-~~~G~~v~~~-VLlv~~-~~~~iG~P-v~~a~V~a~V~~~~k~~Kv~vfK~kr   76 (100)
T 2zjr_O            1 MFAIIQTGGKQYRVSEGDVIRVESLQ-GEAGDKVELK-ALFVGG-EQTVFGED-AGKYTVQAEVVEHGRGKKIYIRKYKS   76 (100)
T ss_dssp             ----CCSSCCSCCSCCEEEEECCSCC-SSCCEEEECC-SCEETT-SCEECSST-TTTSCEEEEEEECCBCCCEEEEEECS
T ss_pred             CEEEEEECCEEEEEeCCCEEEEcccC-CCCCCEEEEE-EEEEcC-CCeEECCc-CCCCEEEEEEEeecCCCcEEEEEECC
Confidence            99999999999999999999999996 8999999999 999998 88999999 99999999999999999999999999


Q ss_pred             CCCcccccCCcCCccc
Q 028995          183 KKNYRRNIGHRQVKDL  198 (200)
Q Consensus       183 RK~yrRk~GHRQ~~T~  198 (200)
                      ||+|||++||||+||+
T Consensus        77 rK~yrrk~GHRQ~~T~   92 (100)
T 2zjr_O           77 GVQYRRRTGHRQNFTA   92 (100)
T ss_dssp             SSCCEEEEEECCBEEE
T ss_pred             CCCCcCCCCccCCcEE
Confidence            9999999999999996

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	200
d2qamr1	103	b.155.1.1 (R:1-103) Ribosomal protein L21p {Escher	1e-29
d2j01v1	101	b.155.1.1 (V:1-101) Ribosomal protein L21p {Thermu	4e-26
d2zjro1	94	b.155.1.1 (O:5-98) Ribosomal protein L21p {Deinoco	2e-19

>d2qamr1 b.155.1.1 (R:1-103) Ribosomal protein L21p {Escherichia coli [TaxId: 562]} Length = 103

class: All beta proteins
fold: L21p-like
superfamily: L21p-like
family: Ribosomal protein L21p
domain: Ribosomal protein L21p
species: Escherichia coli [TaxId: 562]

 Score =  103 bits (258), Expect = 1e-29
 Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 1/91 (1%)

Query: 104 FAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVH 163
           +AV   G +Q+ V  G+ +  ++L      + +   +VL++       IG P V    + 
Sbjct: 2   YAVFQSGGKQHRVSEGQTVRLEKLD-IATGETVEFAEVLMIANGEEVKIGVPFVDGGVIK 60

Query: 164 AVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQ 194
           A V   G   KV + K++++K+YR+  GHRQ
Sbjct: 61  AEVVAHGRGEKVKIVKFRRRKHYRKQQGHRQ 91

>d2j01v1 b.155.1.1 (V:1-101) Ribosomal protein L21p {Thermus thermophilus [TaxId: 274]} Length = 101

class: All beta proteins
fold: L21p-like
superfamily: L21p-like
family: Ribosomal protein L21p
domain: Ribosomal protein L21p
species: Thermus thermophilus [TaxId: 274]

 Score = 94.5 bits (235), Expect = 4e-26
 Identities = 38/91 (41%), Positives = 50/91 (54%), Gaps = 3/91 (3%)

Query: 104 FAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVH 163
           FA+V  G +QY V PG  +  ++L  A     + L  +LL G KT   +G PVV  A+V 
Sbjct: 2   FAIVKTGGKQYRVEPGLKLRVEKLD-AEPGATVELPVLLLGGEKT--VVGTPVVEGASVV 58

Query: 164 AVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQ 194
           A V   G   K++V K+K K  YRR  GHRQ
Sbjct: 59  AEVLGHGRGKKILVSKFKAKVQYRRKKGHRQ 89

>d2zjro1 b.155.1.1 (O:5-98) Ribosomal protein L21p {Deinococcus radiodurans [TaxId: 1299]} Length = 94

class: All beta proteins
fold: L21p-like
superfamily: L21p-like
family: Ribosomal protein L21p
domain: Ribosomal protein L21p
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 76.8 bits (189), Expect = 2e-19
 Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 4/88 (4%)

Query: 107 VMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVHAVV 166
           +  G +QY V  G  I  + L+     DK+ L  + + G +    +         V A V
Sbjct: 1   IQTGGKQYRVSEGDVIRVESLQ-GEAGDKVELKALFVGGEQ---TVFGEDAGKYTVQAEV 56

Query: 167 EEQGLNPKVIVFKYKKKKNYRRNIGHRQ 194
            E G   K+ + KYK    YRR  GHRQ
Sbjct: 57  VEHGRGKKIYIRKYKSGVQYRRRTGHRQ 84

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	200
d2qamr1	103	Ribosomal protein L21p {Escherichia coli [TaxId: 5	100.0
d2j01v1	101	Ribosomal protein L21p {Thermus thermophilus [TaxI	100.0
d2zjro1	94	Ribosomal protein L21p {Deinococcus radiodurans [T	100.0

>d2qamr1 b.155.1.1 (R:1-103) Ribosomal protein L21p {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: L21p-like
superfamily: L21p-like
family: Ribosomal protein L21p
domain: Ribosomal protein L21p
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.8e-42  Score=262.63  Aligned_cols=95  Identities=27%  Similarity=0.473  Sum_probs=93.3

Q ss_pred             eEEEEEECCEEEEEcCCCEEEEcccCCCCCCCeEEeeeEEEEecCCceEeccceecCcEEEEEEEeecCCCeEEEEEecC
Q 028995          103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVHAVVEEQGLNPKVIVFKYKK  182 (200)
Q Consensus       103 mYAIIeiGGKQYkV~~Gd~I~VerL~~~e~Gd~I~l~~VLlvg~~~~t~vG~P~v~~a~V~AtVveh~kg~Ki~VfK~Kr  182 (200)
                      |||||++|||||||++||+|.||+|. +++||+|+|++|||+++++.+.+|+|||++++|+|+|++|+||+||+||||||
T Consensus         1 MyAIi~~gGkQykV~~Gd~i~v~~l~-~~~G~~i~~~~VLlv~~~~~~~iG~P~l~~a~V~a~V~~~~k~~Ki~vfK~kr   79 (103)
T d2qamr1           1 MYAVFQSGGKQHRVSEGQTVRLEKLD-IATGETVEFAEVLMIANGEEVKIGVPFVDGGVIKAEVVAHGRGEKVKIVKFRR   79 (103)
T ss_dssp             CCCCCCSSSSCCCCCSSCCEEESCCC-CCTTCEEEECCCSCCCSSSCCCCSSSSCSSCCEEEEEEEEECCCCEEEEEECT
T ss_pred             CEEEEEECCEEEEEcCCCEEEEeccC-CCCCCcEEehhheEcCCCCcEEeCCCcccccEEEEEEeeecCCccEEEEEecC
Confidence            99999999999999999999999995 89999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcccccCCcCCccc
Q 028995          183 KKNYRRNIGHRQVKDL  198 (200)
Q Consensus       183 RK~yrRk~GHRQ~~T~  198 (200)
                      ||+|||++||||+||+
T Consensus        80 rk~yrr~~GHRQ~~T~   95 (103)
T d2qamr1          80 RKHYRKQQGHRQWFTD   95 (103)
T ss_dssp             TSSCEEEEEECCCEEE
T ss_pred             CCcccccCcccCCeEE
Confidence            9999999999999996

>d2j01v1 b.155.1.1 (V:1-101) Ribosomal protein L21p {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: L21p-like
superfamily: L21p-like
family: Ribosomal protein L21p
domain: Ribosomal protein L21p
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1.8e-39  Score=247.33  Aligned_cols=93  Identities=39%  Similarity=0.538  Sum_probs=87.1

Q ss_pred             eEEEEEECCEEEEEcCCCEEEEcccCCCCCCCeEEeeeEEEEecCCceEeccceecCcEEEEEEEeecCCCeEEEEEecC
Q 028995          103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVHAVVEEQGLNPKVIVFKYKK  182 (200)
Q Consensus       103 mYAIIeiGGKQYkV~~Gd~I~VerL~~~e~Gd~I~l~~VLlvg~~~~t~vG~P~v~~a~V~AtVveh~kg~Ki~VfK~Kr  182 (200)
                      |||||++|||||||++||+|.||+|. +++|+.|+|+.||+. + +.+.||.|||+||+|+|+|++|+||+||++|||||
T Consensus         1 MyAVi~~gGkQykV~~Gd~l~v~~l~-~~~g~~v~~~~ll~~-~-~~~~iG~P~l~~a~V~a~V~~~~k~~Kv~vfK~kr   77 (101)
T d2j01v1           1 MFAIVKTGGKQYRVEPGLKLRVEKLD-AEPGATVELPVLLLG-G-EKTVVGTPVVEGASVVAEVLGHGRGKKILVSKFKA   77 (101)
T ss_dssp             CCCEEEETTEEEECCSSCCCCCCCCS-CCSSSCCBCCCCSCC-C-SSTTCCCCCGGGCSSCCCCEECCCCCCCCCCCCCE
T ss_pred             CEEEEEECCEEEEEcCCCEEEEeccc-CCCCccEEEEEEEEc-C-CceeeCCcccCCcEEEEEEEEecCCCcEEEEEEcC
Confidence            99999999999999999999999995 899999999965553 3 45779999999999999999999999999999999


Q ss_pred             CCCcccccCCcCCccc
Q 028995          183 KKNYRRNIGHRQVKDL  198 (200)
Q Consensus       183 RK~yrRk~GHRQ~~T~  198 (200)
                      ||+|||++||||+||+
T Consensus        78 RK~y~R~~GHRQ~~T~   93 (101)
T d2j01v1          78 KVQYRRKKGHRQPYTE   93 (101)
T ss_dssp             ECCCCEECCCCCCCCC
T ss_pred             cCCcccCCcccCCeEE
Confidence            9999999999999996

>d2zjro1 b.155.1.1 (O:5-98) Ribosomal protein L21p {Deinococcus radiodurans [TaxId: 1299]}

class: All beta proteins
fold: L21p-like
superfamily: L21p-like
family: Ribosomal protein L21p
domain: Ribosomal protein L21p
species: Deinococcus radiodurans [TaxId: 1299]

Probab=100.00  E-value=4.4e-35  Score=220.50  Aligned_cols=88  Identities=31%  Similarity=0.411  Sum_probs=80.1

Q ss_pred             EEECCEEEEEcCCCEEEEcccCCCCCCCeEEeeeEEEEecCCceEeccceecCcEEEEEEEeecCCCeEEEEEecCCCCc
Q 028995          107 VMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVHAVVEEQGLNPKVIVFKYKKKKNY  186 (200)
Q Consensus       107 IeiGGKQYkV~~Gd~I~VerL~~~e~Gd~I~l~~VLlvg~~~~t~vG~P~v~~a~V~AtVveh~kg~Ki~VfK~KrRK~y  186 (200)
                      |++|||||+|++||+|.||+|. +++||+|+|+.||+.  ++.+ +|.|++.+|+|+|+|++|+||+||+||||||||+|
T Consensus         1 I~tGGKQykV~~Gd~i~vekl~-~~~G~~i~~~~vl~~--g~~~-~~g~~l~~a~V~a~V~~~~r~~Ki~vfK~krrK~y   76 (94)
T d2zjro1           1 IQTGGKQYRVSEGDVIRVESLQ-GEAGDKVELKALFVG--GEQT-VFGEDAGKYTVQAEVVEHGRGKKIYIRKYKSGVQY   76 (94)
T ss_dssp             CCSSCCSCCSCCEEEEECCSCC-SSCCEEEECCSCEET--TSCE-ECSSTTTTSCEEEEEEECCBCCCEEEEEECSSSCC
T ss_pred             CccCCEEEEEcCCCEEEEeccc-CccCCceEEeeeEEc--cccc-ccCCCCceeEEEEEEEEeccCCceEEEEEcCCCCc
Confidence            6799999999999999999995 899999999988773  2344 55666999999999999999999999999999999


Q ss_pred             ccccCCcCCccc
Q 028995          187 RRNIGHRQVKDL  198 (200)
Q Consensus       187 rRk~GHRQ~~T~  198 (200)
                      ||++||||+||+
T Consensus        77 rRk~GHRQ~~T~   88 (94)
T d2zjro1          77 RRRTGHRQNFTA   88 (94)
T ss_dssp             EEEEEECCBEEE
T ss_pred             cccCCccCCcEE
Confidence            999999999996