Citrus Sinensis ID: 028996

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200
Protein Sequence
MGKVFASNPLSLNVPDPAFESWLRDSGYLEILDTATTTSANAVTTASTKETTTATTITHSLLHYLYTFISLLTVNPFAKLTTDDFSAKTPSWTREFIGALGSYSFPSSPHTLKLRVHENVKRYARNYASLFILFFACSLYQMPLALVGLISSLALWDFFKFCSDKWNWDRYPVIRQVLVRIAQCGELSNISSLNQNGSRY
Secondary Structure (PSIPRED)
ccccccccccccccccHHHHHHHHHcccHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccHHHHHHHHccccHHHEcccccccHHHccccccccccccHHHHHHHHHHHHHHHHHHHccHHHHccHHHHccccccccHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
mgkvfasnplslnvpdpafeswlrdsgylEILDtatttsanavttastketttaTTITHSLLHYLYTFISLLtvnpfaklttddfsaktpswTREFIGalgsysfpssphtlklRVHENVKRYARNYASLFILFFACSLYQMPLALVGLISSLALWDFFKfcsdkwnwdrypvIRQVLVRIAQCgelsnisslnqngsry
Flexible Loop (DISEMBL)
mgkvfasnplslnvpdpAFESWLRDSGYLEILDTatttsanavttastketttaTTITHSLLHYLYTFISLLTVNPFAKLTTDDFSAKTPSWTREFIGALGSYSFPSSPHTLKLRVHENVKRYARNYASLFILFFACSLYQMPLALVGLISSLALWDFFKFCSDKWNWDRYPVIRQVLVRIAQcgelsnisslnqngsry
Low Complexity Region (SEG)
MGKVFASNPLSLNVPDPAFESWLRDSGYLEILDtatttsanavttastketttattitHSLLHYLYTFISLLTVNPFAKLTTDDFSAKTPSWTREFIGALGSYSFPSSPHTLKLRVHENVKRYARNYASLFILFFACSLYQMPLALVGLISSLALWDFFKFCSDKWNWDRYPVIRQVLVRIAQCGELSNISSLNQNGSRY
Disordered region (IsUnstruct)
*****************AFESWLRDSGYLEILDTA************************SLLHYLYTFISLLTVNPFAKLTTDDFSAKTPSWTREFIGALGSYSFPSSPHTLKLRVHENVKRYARNYASLFILFFACSLYQMPLALVGLISSLALWDFFKFCSDKWNWDRYPVIRQVLVRIAQCGELS************
Disordered Region (DISOPRED)
******SNPLSLNVPDPAFESWLRDSGYLE******************************LLHYLYTFISLLTVNPFAKLTTDDFSAKTPSWTREFIGALGSYSFPSSPHTLKLRVHENVKRYARNYASLFILFFACSLYQMPLALVGLISSLALWDFFKFCSDKWNWDRYPVIRQVLVRIAQCGELSNISSLNQN****
Disordered Region (DISEMBL)
MGKVFASNPLSLNVPDPAFESWLRDSGYLEILDTATTTSANAVTTASTKETTTATTITHSLLHYLYTFISLLTVNPFAKLTTDDFSAKTPSWTREFIGALGSYSFPSSPHTLKLRVHENVKRYARNYASLFILFFACSLYQMPLALVGLISSLALWDFFKFCSDKWNWDRYPVIRQVLVRIAQCGELSNISSLNQNGSRY
Disordered Region (DISPRO)
********PLSLNVPDPAFESWLRDSGYLEILDTA********************TITHSLLHYLYTFISLLTVNPFAKLTTDDFSAKTPSWTREFIGALGSYSFPSSPHTLKLRVHENVKRYARNYASLFILFFACSLYQMPLALVGLISSLALWDFFKFCSDKWNWDRYPVIRQVLVRIAQCGELSNISSLNQNG***
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGKVFASNPLSLNVPDPAFESWLRDSGYLEILDTATTTSANAVTTASTKETTTATTITHSLLHYLYTFISLLTVNPFAKLTTDDFSAKTPSWTREFIGALGSYSFPSSPHTLKLRVHENVKRYARNYASLFILFFACSLYQMPLALVGLISSLALWDFFKFCSDKWNWDRYPVIRQVLVRIAQCGELSNISSLNQNGSRY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	200	2.2.26 [Sep-21-2011]
Q8LFP1	241	PRA1 family protein H OS=	yes	no	0.95	0.788	0.549	1e-56

>sp|Q8LFP1|PRA1H_ARATH PRA1 family protein H OS=Arabidopsis thaliana GN=PRA1H PE=2 SV=1

 Score =  219 bits (557), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 112/204 (54%), Positives = 147/204 (72%), Gaps = 14/204 (6%)

Query: 5   FASNPLSLNVPDPAFESWLRDSGYLEILDTATTTSANAVTTASTKETT----------TA 54
           F+ NPLSL+VPDPAFESWLRDSGYLE+LD  T+ +A A +++++  ++            
Sbjct: 3   FSPNPLSLSVPDPAFESWLRDSGYLELLDHRTSAAAAAASSSASVSSSAAATSAASDDVV 62

Query: 55  TTITH----SLLHYLYTFISLLTVNPFAKLTTDDFSAKTPSWTREFIGALGSYSFPSSPH 110
           ++IT     SLL  L T  SLLT+NPF+KL+ DDFS  T  WT  FIG   SYSFPSS  
Sbjct: 63  SSITGGFFASLLSRLVTVSSLLTINPFSKLSADDFSGDTTPWTTGFIGNCDSYSFPSSSQ 122

Query: 111 TLKLRVHENVKRYARNYASLFILFFACSLYQMPLALVGLISSLALWDFFKFCSDKWNWDR 170
             ++RVHEN+KR+ARNYA+LFI+FFAC+LYQMPLALVGL+ SLALW+ FK+CSDKW +DR
Sbjct: 123 QARMRVHENIKRFARNYATLFIVFFACALYQMPLALVGLLGSLALWELFKYCSDKWKFDR 182

Query: 171 YPVIRQVLVRIAQCGELSNISSLN 194
           +P +R++ + I QC     ++ LN
Sbjct: 183 HPSMRKLSIGIGQCATAVLLTFLN 206

May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments.
Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	200
255584403	235	conserved hypothetical protein [Ricinus	0.955	0.812	0.628	1e-63
224128244	232	predicted protein [Populus trichocarpa]	0.905	0.780	0.672	2e-62
224114888	229	predicted protein [Populus trichocarpa]	0.955	0.834	0.637	1e-59
449456631	235	PREDICTED: PRA1 family protein H-like is	0.915	0.778	0.603	1e-58
147844569	244	hypothetical protein VITISV_019028 [Viti	0.91	0.745	0.606	2e-58
449507067	235	PREDICTED: PRA1 family protein H-like is	0.915	0.778	0.603	2e-58
225461516	233	PREDICTED: PRA1 family protein H-like [V	0.92	0.789	0.589	1e-57
302142972	231	unnamed protein product [Vitis vinifera]	0.9	0.779	0.596	4e-57
4469005	208	hypothetical protein [Arabidopsis thalia	0.915	0.879	0.568	1e-55
297799228	241	hypothetical protein ARALYDRAFT_492039 [	0.9	0.746	0.567	4e-55

>gi|255584403|ref|XP_002532934.1| conserved hypothetical protein [Ricinus communis] gi|223527298|gb|EEF29450.1| conserved hypothetical protein [Ricinus communis]

 Score =  248 bits (632), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 125/199 (62%), Positives = 148/199 (74%), Gaps = 8/199 (4%)

Query: 4   VFASNPLSLNVPDPAFESWLRDSGYLEILDTATTTSANAVTTASTKETTTATTITH---- 59
           VF+SNPLSL+VPDPAFESWLRDSGYLE+LD  ++++A   T  +   + + T        
Sbjct: 2   VFSSNPLSLSVPDPAFESWLRDSGYLELLDHRSSSTAATSTPTTASTSNSTTATAATITG 61

Query: 60  ----SLLHYLYTFISLLTVNPFAKLTTDDFSAKTPSWTREFIGALGSYSFPSSPHTLKLR 115
               SL  +  T ISL T+NP +KLTTDDFS +TPSWTR F G  GSYSFPS+    +LR
Sbjct: 62  GFFISLFSHFITLISLFTLNPLSKLTTDDFSGQTPSWTRVFFGDFGSYSFPSNADQARLR 121

Query: 116 VHENVKRYARNYASLFILFFACSLYQMPLALVGLISSLALWDFFKFCSDKWNWDRYPVIR 175
           VHENVKRYARNYASLFILFFAC+LYQMPLAL+GLISSLALWD  KFCSD+W W++YPVIR
Sbjct: 122 VHENVKRYARNYASLFILFFACTLYQMPLALIGLISSLALWDVLKFCSDRWGWEQYPVIR 181

Query: 176 QVLVRIAQCGELSNISSLN 194
           QVL+R AQC     +  LN
Sbjct: 182 QVLIRTAQCATAVILIYLN 200

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128244|ref|XP_002329116.1| predicted protein [Populus trichocarpa] gi|222869785|gb|EEF06916.1| predicted protein [Populus trichocarpa]

 Score =  243 bits (621), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 125/186 (67%), Positives = 147/186 (79%), Gaps = 5/186 (2%)

Query: 4   VFASNPLSLNVPDPAFESWLRDSGYLEILDTATTTSANAVTTASTKETTTATTITH---- 59
           VF+SNPLSL+VPD  F+SWLRDSGYLEILD  +++SA A    ++  T+T TT T     
Sbjct: 2   VFSSNPLSLSVPDTTFDSWLRDSGYLEILDQHSSSSAAAAPATTSTITSTTTTATATGLF 61

Query: 60  -SLLHYLYTFISLLTVNPFAKLTTDDFSAKTPSWTREFIGALGSYSFPSSPHTLKLRVHE 118
            S   ++ T +SL T+NPF+KLTTDDFS +TPSWTR F    GSYSFPS     +LRV+E
Sbjct: 62  ISFFSHILTLLSLFTLNPFSKLTTDDFSGQTPSWTRSFFADCGSYSFPSGSDQARLRVNE 121

Query: 119 NVKRYARNYASLFILFFACSLYQMPLALVGLISSLALWDFFKFCSDKWNWDRYPVIRQVL 178
           NVKRYARNYASLFILFFAC+LYQMPLAL+GLISSLALWD FKFCSD+W WDRYPV+RQV+
Sbjct: 122 NVKRYARNYASLFILFFACTLYQMPLALIGLISSLALWDVFKFCSDRWGWDRYPVLRQVM 181

Query: 179 VRIAQC 184
           VR AQC
Sbjct: 182 VRTAQC 187

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224114888|ref|XP_002316885.1| predicted protein [Populus trichocarpa] gi|222859950|gb|EEE97497.1| predicted protein [Populus trichocarpa]

 Score =  234 bits (597), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 123/193 (63%), Positives = 146/193 (75%), Gaps = 2/193 (1%)

Query: 4   VFASNPLSLNVPDPAFESWLRDSGYLEILDT--ATTTSANAVTTASTKETTTATTITHSL 61
           VF+SNPLSL+VPDP F++WLRDSGYLEILD   +   + +  TT++T  TTTAT +  S 
Sbjct: 2   VFSSNPLSLSVPDPTFDTWLRDSGYLEILDQHSSAAAAPSTTTTSTTTTTTTATGLFISF 61

Query: 62  LHYLYTFISLLTVNPFAKLTTDDFSAKTPSWTREFIGALGSYSFPSSPHTLKLRVHENVK 121
             +  T +SL T+NPF+KLTTDDFS  TPSWTR F     SYSFPS     +LRV+ENVK
Sbjct: 62  FSHALTLLSLFTLNPFSKLTTDDFSGPTPSWTRSFFADHRSYSFPSGFGQARLRVNENVK 121

Query: 122 RYARNYASLFILFFACSLYQMPLALVGLISSLALWDFFKFCSDKWNWDRYPVIRQVLVRI 181
           RYARNYA LF+LFF C+LYQMPLAL+G+ISSLALWD FKFCSD+W WDRYPVIRQV+VR 
Sbjct: 122 RYARNYAFLFVLFFVCTLYQMPLALIGMISSLALWDIFKFCSDRWGWDRYPVIRQVMVRA 181

Query: 182 AQCGELSNISSLN 194
           AQC     +  LN
Sbjct: 182 AQCVAAVILICLN 194

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456631|ref|XP_004146052.1| PREDICTED: PRA1 family protein H-like isoform 1 [Cucumis sativus] gi|449456633|ref|XP_004146053.1| PREDICTED: PRA1 family protein H-like isoform 2 [Cucumis sativus]

 Score =  231 bits (588), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 114/189 (60%), Positives = 134/189 (70%), Gaps = 6/189 (3%)

Query: 5   FASNPLSLNVPDPAFESWLRDSGYLEILDTATT------TSANAVTTASTKETTTATTIT 58
           F+SNPLSL+VPD AF+SWLRDSGYLEILD  T+      ++A       T     AT   
Sbjct: 3   FSSNPLSLSVPDAAFDSWLRDSGYLEILDQRTSDLHRHSSAAPPARPTPTAAAPLATGFF 62

Query: 59  HSLLHYLYTFISLLTVNPFAKLTTDDFSAKTPSWTREFIGALGSYSFPSSPHTLKLRVHE 118
            SL   + T +S+ T+NPFAKL+  DFS  TPSWT  F+G   SYSFPSSP   +LRVHE
Sbjct: 63  ISLFSRIATLLSIFTLNPFAKLSAADFSGPTPSWTTGFVGFFESYSFPSSPAQARLRVHE 122

Query: 119 NVKRYARNYASLFILFFACSLYQMPLALVGLISSLALWDFFKFCSDKWNWDRYPVIRQVL 178
           N KRYARNYASLF+LFF C+LYQMPLAL+GLIS LALWD  KFC D+W  D+YPV+ Q L
Sbjct: 123 NAKRYARNYASLFVLFFVCTLYQMPLALLGLISCLALWDIVKFCCDRWGLDKYPVLWQCL 182

Query: 179 VRIAQCGEL 187
           VRIAQC  +
Sbjct: 183 VRIAQCATV 191

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147844569|emb|CAN80067.1| hypothetical protein VITISV_019028 [Vitis vinifera]

 Score =  231 bits (588), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 114/188 (60%), Positives = 143/188 (76%), Gaps = 6/188 (3%)

Query: 5   FASNPLSLNVPDPAFESWLRDSGYLEILDTATTTSANAVTTASTKETTTATTITHS---- 60
           F+SNPLSL+VPD AFE+WLRD+GYLE++D   T+  + +++     +TTA+  ++S    
Sbjct: 3   FSSNPLSLSVPDAAFETWLRDTGYLEVVDR-RTSDLHRLSSGGDSSSTTASIPSNSFFFV 61

Query: 61  -LLHYLYTFISLLTVNPFAKLTTDDFSAKTPSWTREFIGALGSYSFPSSPHTLKLRVHEN 119
            +L +L T +SL T+NPF+KLT+DDFS  TPSWT  F+G   SY FPSS    +LRVHEN
Sbjct: 62  SILSHLGTLLSLFTLNPFSKLTSDDFSGPTPSWTLAFVGFCDSYXFPSSSSQARLRVHEN 121

Query: 120 VKRYARNYASLFILFFACSLYQMPLALVGLISSLALWDFFKFCSDKWNWDRYPVIRQVLV 179
           VKRYARNYA+LFI+ FAC LYQMP+ALVGLISSLALWD  +FCSDKW  DRYPV+RQ L+
Sbjct: 122 VKRYARNYATLFIICFACXLYQMPIALVGLISSLALWDLLRFCSDKWRVDRYPVVRQALI 181

Query: 180 RIAQCGEL 187
              QCGEL
Sbjct: 182 HTVQCGEL 189

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449507067|ref|XP_004162924.1| PREDICTED: PRA1 family protein H-like isoform 1 [Cucumis sativus] gi|449507071|ref|XP_004162925.1| PREDICTED: PRA1 family protein H-like isoform 2 [Cucumis sativus]

 Score =  230 bits (587), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 114/189 (60%), Positives = 134/189 (70%), Gaps = 6/189 (3%)

Query: 5   FASNPLSLNVPDPAFESWLRDSGYLEILDTATT------TSANAVTTASTKETTTATTIT 58
           F+SNPLSL+VPD AF+SWLRDSGYLEILD  T+      ++A       T     AT   
Sbjct: 3   FSSNPLSLSVPDAAFDSWLRDSGYLEILDQRTSDLHRHSSAAPPARPTPTAAAPLATGFF 62

Query: 59  HSLLHYLYTFISLLTVNPFAKLTTDDFSAKTPSWTREFIGALGSYSFPSSPHTLKLRVHE 118
            SL   + T +S+ T+NPFAKL+  DFS  TPSWT  F+G   SYSFPSSP   +LRVHE
Sbjct: 63  ISLFSRIATLLSIFTLNPFAKLSAADFSGPTPSWTTGFLGFFESYSFPSSPAQARLRVHE 122

Query: 119 NVKRYARNYASLFILFFACSLYQMPLALVGLISSLALWDFFKFCSDKWNWDRYPVIRQVL 178
           N KRYARNYASLF+LFF C+LYQMPLAL+GLIS LALWD  KFC D+W  D+YPV+ Q L
Sbjct: 123 NAKRYARNYASLFVLFFVCTLYQMPLALLGLISCLALWDIVKFCCDRWGLDKYPVLWQCL 182

Query: 179 VRIAQCGEL 187
           VRIAQC  +
Sbjct: 183 VRIAQCATV 191

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461516|ref|XP_002285129.1| PREDICTED: PRA1 family protein H-like [Vitis vinifera]

 Score =  228 bits (580), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 112/190 (58%), Positives = 143/190 (75%), Gaps = 6/190 (3%)

Query: 1   MGKVFASNPLSLNVPDPAFESWLRDSGYLEILDTATTTSANAVTTASTKETTTATTITHS 60
           M   F+SNPLSL+VPD AFE+WLRD+GYLE++D   T+  + +++     +TTA+  ++S
Sbjct: 1   MPMAFSSNPLSLSVPDAAFETWLRDTGYLEVVDR-RTSDLHRLSSGGDSSSTTASIPSNS 59

Query: 61  -----LLHYLYTFISLLTVNPFAKLTTDDFSAKTPSWTREFIGALGSYSFPSSPHTLKLR 115
                +L +L T +SL T+NPF+KLT+DDFS  TPSWT  F+G   SY+FPSS    +LR
Sbjct: 60  FFFVSILSHLGTLLSLFTLNPFSKLTSDDFSGPTPSWTLAFVGFCDSYTFPSSSSQARLR 119

Query: 116 VHENVKRYARNYASLFILFFACSLYQMPLALVGLISSLALWDFFKFCSDKWNWDRYPVIR 175
           VHENVKRYARNYA+LFI+ FAC+LYQMP+ALVGLISSLALWD  +FCSDKW  DRYPV+R
Sbjct: 120 VHENVKRYARNYATLFIICFACTLYQMPIALVGLISSLALWDLLRFCSDKWRVDRYPVVR 179

Query: 176 QVLVRIAQCG 185
           Q L+   QC 
Sbjct: 180 QALIHTVQCA 189

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142972|emb|CBI20267.3| unnamed protein product [Vitis vinifera]

 Score =  226 bits (576), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 111/186 (59%), Positives = 142/186 (76%), Gaps = 6/186 (3%)

Query: 5   FASNPLSLNVPDPAFESWLRDSGYLEILDTATTTSANAVTTASTKETTTATTITHS---- 60
           F+SNPLSL+VPD AFE+WLRD+GYLE++D   T+  + +++     +TTA+  ++S    
Sbjct: 3   FSSNPLSLSVPDAAFETWLRDTGYLEVVDR-RTSDLHRLSSGGDSSSTTASIPSNSFFFV 61

Query: 61  -LLHYLYTFISLLTVNPFAKLTTDDFSAKTPSWTREFIGALGSYSFPSSPHTLKLRVHEN 119
            +L +L T +SL T+NPF+KLT+DDFS  TPSWT  F+G   SY+FPSS    +LRVHEN
Sbjct: 62  SILSHLGTLLSLFTLNPFSKLTSDDFSGPTPSWTLAFVGFCDSYTFPSSSSQARLRVHEN 121

Query: 120 VKRYARNYASLFILFFACSLYQMPLALVGLISSLALWDFFKFCSDKWNWDRYPVIRQVLV 179
           VKRYARNYA+LFI+ FAC+LYQMP+ALVGLISSLALWD  +FCSDKW  DRYPV+RQ L+
Sbjct: 122 VKRYARNYATLFIICFACTLYQMPIALVGLISSLALWDLLRFCSDKWRVDRYPVVRQALI 181

Query: 180 RIAQCG 185
              QC 
Sbjct: 182 HTVQCA 187

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4469005|emb|CAB38266.1| hypothetical protein [Arabidopsis thaliana] gi|7269608|emb|CAB81404.1| hypothetical protein [Arabidopsis thaliana]

 Score =  221 bits (563), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 112/197 (56%), Positives = 145/197 (73%), Gaps = 14/197 (7%)

Query: 5   FASNPLSLNVPDPAFESWLRDSGYLEILDTATTTSANAVTTASTKETT----------TA 54
           F+ NPLSL+VPDPAFESWLRDSGYLE+LD  T+ +A A +++++  ++            
Sbjct: 3   FSPNPLSLSVPDPAFESWLRDSGYLELLDHRTSAAAAAASSSASVSSSAAATSAASDDVV 62

Query: 55  TTITH----SLLHYLYTFISLLTVNPFAKLTTDDFSAKTPSWTREFIGALGSYSFPSSPH 110
           ++IT     SLL  L T  SLLT+NPF+KL+ DDFS  T  WT  FIG   SYSFPSS  
Sbjct: 63  SSITGGFFASLLSRLVTVSSLLTINPFSKLSADDFSGDTTPWTTGFIGNCDSYSFPSSSQ 122

Query: 111 TLKLRVHENVKRYARNYASLFILFFACSLYQMPLALVGLISSLALWDFFKFCSDKWNWDR 170
             ++RVHEN+KR+ARNYA+LFI+FFAC+LYQMPLALVGL+ SLALW+ FK+CSDKW +DR
Sbjct: 123 QARMRVHENIKRFARNYATLFIVFFACALYQMPLALVGLLGSLALWELFKYCSDKWKFDR 182

Query: 171 YPVIRQVLVRIAQCGEL 187
           +P +R++ + I QCGE 
Sbjct: 183 HPSMRKLSIGIGQCGEF 199

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297799228|ref|XP_002867498.1| hypothetical protein ARALYDRAFT_492039 [Arabidopsis lyrata subsp. lyrata] gi|297313334|gb|EFH43757.1| hypothetical protein ARALYDRAFT_492039 [Arabidopsis lyrata subsp. lyrata]

 Score =  219 bits (559), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 110/194 (56%), Positives = 143/194 (73%), Gaps = 14/194 (7%)

Query: 5   FASNPLSLNVPDPAFESWLRDSGYLEILDTATTTSANAVTTASTKETT----------TA 54
           F+ NPLSL+VPDPAFESWLRDSGYLE+LD  T+ +A A +++++  ++            
Sbjct: 3   FSPNPLSLSVPDPAFESWLRDSGYLELLDHRTSAAAAAASSSASVSSSAAATSAASDDVV 62

Query: 55  TTITH----SLLHYLYTFISLLTVNPFAKLTTDDFSAKTPSWTREFIGALGSYSFPSSPH 110
           ++IT     SLL  L T  SLLT+NPF+KL+ DDFS  TP WT  F G   SYSFPSS  
Sbjct: 63  SSITGGFFASLLSRLVTVSSLLTINPFSKLSADDFSGDTPPWTTGFFGNCDSYSFPSSSQ 122

Query: 111 TLKLRVHENVKRYARNYASLFILFFACSLYQMPLALVGLISSLALWDFFKFCSDKWNWDR 170
             ++RVHEN+KR+ARNYA+LFI+FFAC+LYQMPLALVGL++SLALW+ FKFCSD+W +DR
Sbjct: 123 QARMRVHENIKRFARNYATLFIVFFACALYQMPLALVGLLASLALWELFKFCSDRWKFDR 182

Query: 171 YPVIRQVLVRIAQC 184
           +P +R+  + I QC
Sbjct: 183 HPSMRKFSIGIGQC 196

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	200
TAIR|locus:2137692	241	PRA1.H "AT4G27540" [Arabidopsi	0.95	0.788	0.524	2.1e-52

TAIR|locus:2137692 PRA1.H "AT4G27540" [Arabidopsis thaliana (taxid:3702)]

 Score = 543 (196.2 bits), Expect = 2.1e-52, P = 2.1e-52
 Identities = 107/204 (52%), Positives = 131/204 (64%)

Query:     5 FASNPLSLNVPDPAFESWLRDSGYLEILDXXXXXXXXXXXXXXXXXXXXXXXXXHS---- 60
             F+ NPLSL+VPDPAFESWLRDSGYLE+LD                          S    
Sbjct:     3 FSPNPLSLSVPDPAFESWLRDSGYLELLDHRTSAAAAAASSSASVSSSAAATSAASDDVV 62

Query:    61 ----------LLHYLYTFISLLTVNPFAKLTTDDFSAKTPSWTREFIGALGSYSFPSSPH 110
                       LL  L T  SLLT+NPF+KL+ DDFS  T  WT  FIG   SYSFPSS  
Sbjct:    63 SSITGGFFASLLSRLVTVSSLLTINPFSKLSADDFSGDTTPWTTGFIGNCDSYSFPSSSQ 122

Query:   111 TLKLRVHENVKRYARNYASLFILFFACSLYQMPLALVGLISSLALWDFFKFCSDKWNWDR 170
               ++RVHEN+KR+ARNYA+LFI+FFAC+LYQMPLALVGL+ SLALW+ FK+CSDKW +DR
Sbjct:   123 QARMRVHENIKRFARNYATLFIVFFACALYQMPLALVGLLGSLALWELFKYCSDKWKFDR 182

Query:   171 YPVIRQVLVRIAQCGELSNISSLN 194
             +P +R++ + I QC     ++ LN
Sbjct:   183 HPSMRKLSIGIGQCATAVLLTFLN 206


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.138   0.438    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      200       175   0.00078  109 3  11 22  0.50    31
                                                     31  0.49    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  611 (65 KB)
  Total size of DFA:  177 KB (2102 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.54u 0.11s 16.65t   Elapsed:  00:00:01
  Total cpu time:  16.54u 0.11s 16.65t   Elapsed:  00:00:01
  Start:  Mon May 20 20:51:02 2013   End:  Mon May 20 20:51:03 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=IDA

GO:0006914 "autophagy" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8LFP1	PRA1H_ARATH	No assigned EC number	0.5490	0.95	0.7883	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	200
pfam03208	153	pfam03208, PRA1, PRA1 family protein	0.003

>gnl|CDD|190565 pfam03208, PRA1, PRA1 family protein

 Score = 36.5 bits (85), Expect = 0.003
 Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 1/68 (1%)

Query: 94  REFIGALGSYSFPSSPHTLKLRVHENVKRYARNYASLFILFFACSLYQMPLALVGLISSL 153
            EF      +S P S      RV  N+  +  NYA + +     SL   PL+L+ L+  +
Sbjct: 13  SEFFD-RSRFSRPRSFSEATSRVRRNLLYFQTNYAIVVLAVLLLSLLTNPLSLIVLLVLV 71

Query: 154 ALWDFFKF 161
           A W F  F
Sbjct: 72  AAWLFLYF 79

This family includes the PRA1 (Prenylated rab acceptor) protein which is a Rab guanine dissociation inhibitor (GDI) displacement factor. This family also includes the glutamate transporter EAAC1 interacting protein GTRAP3-18. Length = 153

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	200
KOG3142	187	consensus Prenylated rab acceptor 1 [Intracellular	99.91
PF03208	153	PRA1: PRA1 family protein; InterPro: IPR004895 Thi	99.81
COG5130	169	YIP3 Prenylated rab acceptor 1 and related protein	98.3
KOG4050	188	consensus Glutamate transporter EAAC1-interacting	93.0

>KOG3142 consensus Prenylated rab acceptor 1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=5.6e-25  Score=185.83  Aligned_cols=85  Identities=27%  Similarity=0.481  Sum_probs=80.9

Q ss_pred             cccccccCCCCCCchhhhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 028996           79 KLTTDDFSAKTPSWTREFIGALGSYSFPSSPHTLKLRVHENVKRYARNYASLFILFFACSLYQMPLALVGLISSLALWDF  158 (200)
Q Consensus        79 ~lTt~Dl~~~~rPWr~eFl~~~~SyS~P~S~~eA~~RV~~Nl~~F~~NYaivvl~vfflsLy~hPiALI~~la~~a~W~f  158 (200)
                      +.+..+=..+.|||+ ||+|. +++|+|+|++||.+|||.|+.||+.||+++++++.+.+|+|||++||++++.+++|.|
T Consensus        27 ~~~~~~~lst~RpW~-ef~d~-~~fs~P~s~s~a~sRi~~Nl~yF~~NY~~iv~~~~~~sLi~~P~~Livl~~lv~~w~~  104 (187)
T KOG3142|consen   27 KQTIQSGLSTRRPWS-EFFDR-SAFSRPRSLSDATSRIKRNLSYFRVNYVIIVAILLFLSLITHPLSLIVLLALVAAWLF  104 (187)
T ss_pred             HHHHHHHHhccCCHH-HHHcc-cccCCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence            566777778999999 99996 9999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcc
Q 028996          159 FKFCSDK  165 (200)
Q Consensus       159 LyFlRDe  165 (200)
                      |||+|||
T Consensus       105 LY~~rd~  111 (187)
T KOG3142|consen  105 LYFLRDE  111 (187)
T ss_pred             eeeecCC
Confidence            9999964

>PF03208 PRA1: PRA1 family protein; InterPro: IPR004895 This family includes yeast hypothetical proteins and the uncharacterised rat prenylated rab acceptor protein PRA1

Probab=99.81  E-value=1.3e-19  Score=142.66  Aligned_cols=81  Identities=28%  Similarity=0.488  Sum_probs=76.2

Q ss_pred             CCCCCCchhhhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhc-
Q 028996           86 SAKTPSWTREFIGALGSYSFPSSPHTLKLRVHENVKRYARNYASLFILFFACSLYQMPLALVGLISSLALWDFFKFCSD-  164 (200)
Q Consensus        86 ~~~~rPWr~eFl~~~~SyS~P~S~~eA~~RV~~Nl~~F~~NYaivvl~vfflsLy~hPiALI~~la~~a~W~fLyFlRD-  164 (200)
                      ..+.|||+ ||+|. ++|+.|++.+|+..|+++|+.||+.||.++++++++++++++|+.+++++.+.++|.+++..++ 
T Consensus         5 ~~~~Rpw~-eF~~~-~~fs~P~~~~~~~~Ri~~Nl~~F~~NY~~i~~~~~~~~ll~~P~~l~~~~~~~~~~~~~~~~~~~   82 (153)
T PF03208_consen    5 LSPLRPWR-EFFDT-SRFSVPSSFSEAKSRIKRNLSYFQTNYLLIFLLLFLIFLLTNPFFLLVLLLVVALWAFIYKSRKE   82 (153)
T ss_pred             cCCCCCHH-HHhCc-cCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence            46899998 99986 9999999999999999999999999999999999999999999999999999999999999986 


Q ss_pred             --ccCc
Q 028996          165 --KWNW  168 (200)
Q Consensus       165 --ew~~  168 (200)
                        .+.+
T Consensus        83 ~~~~~~   88 (153)
T PF03208_consen   83 NDPIVI   88 (153)
T ss_pred             Ccchhc
Confidence              4444

>COG5130 YIP3 Prenylated rab acceptor 1 and related proteins [Intracellular trafficking and secretion / Signal transduction mechanisms]

Probab=98.30  E-value=1.8e-06  Score=72.54  Aligned_cols=68  Identities=22%  Similarity=0.246  Sum_probs=59.2

Q ss_pred             hhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhh
Q 028996           95 EFIGALGSYSFPSSPHTLKLRVHENVKRYARNYASLFILFFACSLYQMPLALVGLISSLALWDFFKFCS  163 (200)
Q Consensus        95 eFl~~~~SyS~P~S~~eA~~RV~~Nl~~F~~NYaivvl~vfflsLy~hPiALI~~la~~a~W~fLyFlR  163 (200)
                      ||++. +-.|.|.++.||.+||-.|++||..||-.++.++..-.|++.|.-||+.....+.=.-.+-+|
T Consensus        34 eFfni-~rIs~PqNf~eaqsRv~~Nl~rFssnYlaiia~l~iy~ll~nllLlivIgivvaGvygi~kl~  101 (169)
T COG5130          34 EFFNI-GRISVPQNFNEAQSRVFANLDRFSSNYLAIIAILTIYYLLYNLLLLIVIGIVVAGVYGIRKLR  101 (169)
T ss_pred             HHhcc-ccccCCcchHHHHHHHHhhHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHhhhhheeeehhhcc
Confidence            99997 999999999999999999999999999999999999999999998888766666544444444

>KOG4050 consensus Glutamate transporter EAAC1-interacting protein GTRAP3-18 [Amino acid transport and metabolism; Signal transduction mechanisms]

Probab=93.00  E-value=0.58  Score=40.55  Aligned_cols=79  Identities=19%  Similarity=0.304  Sum_probs=54.6

Q ss_pred             CCCCchhhhhccccccCCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH----HHHHHHHHH--HHHHH-
Q 028996           88 KTPSWTREFIGALGSYSFPS--SPHTLKLRVHENVKRYARNYASLFILFFACSLYQMPL----ALVGLISSL--ALWDF-  158 (200)
Q Consensus        88 ~~rPWr~eFl~~~~SyS~P~--S~~eA~~RV~~Nl~~F~~NYaivvl~vfflsLy~hPi----ALI~~la~~--a~W~f-  158 (200)
                      |-|-|- +|+-.+.-|..|.  -++.=-.||-.|+-||+.||...++..+.+.-+-.|.    ++|+....+  .+|.+ 
T Consensus        18 PlRa~d-dF~lgS~Rfa~Pd~~D~~kW~nRVisNLLYyQTNYfv~~it~~~l~~f~sp~~iilglivvvlvi~~liwa~~   96 (188)
T KOG4050|consen   18 PLRALD-DFLLGSDRFARPDFNDFKKWNNRVISNLLYYQTNYFVTFITLFLLHGFISPQDIILGLIVVVLVIGTLIWAAS   96 (188)
T ss_pred             cchhHH-HhccCcccccCCCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHh
Confidence            345677 7764456677775  4677778999999999999999999999888887775    344333333  45644 


Q ss_pred             ----HHHhhcccC
Q 028996          159 ----FKFCSDKWN  167 (200)
Q Consensus       159 ----LyFlRDew~  167 (200)
                          .+.||.+.+
T Consensus        97 ~~a~~krmr~~hp  109 (188)
T KOG4050|consen   97 ADANIKRMRTDHP  109 (188)
T ss_pred             ccHHHHHHhhcCc
Confidence                455553333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00