Citrus Sinensis ID: 028997

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200
Protein Sequence
MEGSLFDVHRAEPSQQQSMTTEPLDMQRAESSRQHVRNQSSLLQNSNDLNDADGEDEVPQPSSPSLKKSEERGIIVVHEVKCKLYVKSSDPADKDTWKDRGTGQLSIKCKEGISKGTKESKPTILVRNDVGRVLLNALLYPGIKTNLQKNSIVAIFHTSGDDAGGGNNGSAAARTFLIRTKTEEDRNKLATAIQEYAPAS
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEEEccccccccccEEEEEEEEEEEEEcccccccccccEEEEEEcccccEEEccccccccEEEEccccEEEEEEccccccccccccccccEEEEEEcccHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccEEEEEEEEEEEEEEcccccccccHHHccccEEEEEEEccccccccccccEEEEEccHHHHEEEEEccccccccccccEEEEEEccccccccccccccccEEEEEEEEccHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
megslfdvhraepsqqqsmttepldmqraessrqhvrnqssllqnsndlndadgedevpqpsspslkkseergiIVVHEVKCKLyvkssdpadkdtwkdrgtgqlsikckegiskgtkeskptilvrNDVGRVLLNALLypgiktnlqkNSIVAIFhtsgddagggnngsAAARTFLIRTKTEEDRNKLATAIQEYAPAS
Flexible Loop (DISEMBL)
megslfdvhraepsqqqsmttePLDMQRAESSRQHVRNQSSLLQNSNDLNDADGEdevpqpsspslkkseergiIVVHEVKCKLyvkssdpadkdtwkdrgtgqlsikckegiskgtkeskptilvrndVGRVLLNALLYPGIKTNLQKNSIVAIFHTsgddagggnNGSAAARTFLIRTKTEEDRNKLATAIQEYAPAS
Low Complexity Region (SEG)
MEGSLFDVHRAEPSQQQSMTTEPLDMQRAESSRQHVRNQSSLLQNSNDLNDADGEDEVPQPSSPSLKKSEERGIIVVHEVKCKLYVKSSDPADKDTWKDRGTGQLSIKCKEGISKGTKESKPTILVRNDVGRVLLNALLYPGIKTNLQKNSIVAIFHTsgddagggnngsaaaRTFLIRTKTEEDRNKLATAIQEYAPAS
Disordered region (IsUnstruct)
************************************************************************GIIVVHEVKCKLYVK***********************************TILVRNDVGRVLLNALLYPGIKTNLQKNSIVAIFHTS****************FLI**********************
Disordered Region (DISOPRED)
***S*********************************************************************IIVVHEVKCKLYVKSSDPADKDTWKDRGTGQLSIKCKEG******ESKPTILVRNDVGRVLLNALLYPGIKTNLQKNSIVAIFHTSGDDAGGG*NGSAAARTFLIRTKTEEDRNKLATAIQEYA***
Disordered Region (DISEMBL)
***************************************SSLLQNSNDLNDA*****************EERGIIVVHEVKCKLYVKSSDPADKDTWKDRGTGQLSIKCKEGISKGTKESKPTILVRNDVGRVLLNALLYPGIKTNLQKNSIVAIFHTSGDDAGGGNNGSAAARTFLIRTKTEEDRNKLATAIQEYAPAS
Disordered Region (DISPRO)
**************************************************************SPSLKKSEERGIIVVHEVKCKLYVKSSDPADKDTWKDRGTGQLSIKCKEGISKGTKESKPTILVRNDVGRVLLNALLYPGIKTNLQKNSIVAIFHTSGDDAG**NNGSAAARTFLIRTKTEEDRNKLATAIQEYA***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEGSLFDVHRAEPSQQQSMTTEPLDMQRAESSRQHVRNQSSLLQNSNDLNDADGEDEVPQPSSPSLKKSEERGIIVVHEVKCKLYVKSSDPADKDTWKDRGTGQLSIKCKEGISKGTKESKPTILVRNDVGRVLLNALLYPGIKTNLQKNSIVAIFHTSGDDAGGGNNGSAAARTFLIRTKTEEDRNKLATAIQEYAPAS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	200	2.2.26 [Sep-21-2011]
Q9UKX7	468	Nuclear pore complex prot	yes	no	0.675	0.288	0.286	0.0009

>sp|Q9UKX7|NUP50_HUMAN Nuclear pore complex protein Nup50 OS=Homo sapiens GN=NUP50 PE=1 SV=2

 Score = 43.5 bits (101), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 69/157 (43%), Gaps = 22/157 (14%)

Query: 44  QNSNDLNDADGEDEVPQPSSPSLKKSEERGIIVVHEVKCKLYVKSSDPADKDTWKDRGTG 103
           Q   D  +  G DE      P +  +E +     +  KCKL+ K       + +K++G G
Sbjct: 325 QAEGDSGECKGGDEEENDEPPKVVVTEVKEEDAFYSKKCKLFYKKD-----NEFKEKGIG 379

Query: 104 QLSIKCKEGISKGTKESKPTILVRND--VGRVLLNALLYPGIK-TNLQKNS--IVAIFHT 158
            L +       K T   K  +LVR D  +G +LLN L+ P +  T   KN+  IV + + 
Sbjct: 380 TLHL-------KPTANQKTQLLVRADTNLGNILLNVLIPPNMPCTRTGKNNVLIVCVPNP 432

Query: 159 SGDDAGGGNNGSAAARTFLIRTKTEEDRNKLATAIQE 195
             D+       +    T LIR KT ED ++L   + E
Sbjct: 433 PIDE-----KNATMPVTMLIRVKTSEDADELHKILLE 464

Component of the nuclear pore complex that has a direct role in nuclear protein import. Actively displaces NLSs from importin-alpha, and facilitates disassembly of the importin-alpha:beta-cargo complex and importin recycling. Interacts with multiple transport receptor proteins including CDKN1B. This interaction is required for correct intracellular transport and degradation of CDKN1B.
Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	200
224053983	399	predicted protein [Populus trichocarpa]	0.795	0.398	0.795	5e-69
297742605	406	unnamed protein product [Vitis vinifera]	0.815	0.401	0.769	5e-68
225426763	341	PREDICTED: uncharacterized protein LOC10	0.815	0.478	0.769	6e-68
356539871	359	PREDICTED: uncharacterized protein LOC10	0.815	0.454	0.756	2e-67
363808138	358	uncharacterized protein LOC100788565 [Gl	0.815	0.455	0.756	3e-67
255537265	148	conserved hypothetical protein [Ricinus	0.725	0.979	0.816	1e-65
224074819	509	predicted protein [Populus trichocarpa]	0.72	0.282	0.821	5e-65
449452376	351	PREDICTED: uncharacterized protein LOC10	0.73	0.415	0.763	2e-61
449495900	833	PREDICTED: protein HAPLESS 2-like [Cucum	0.73	0.175	0.763	9e-61
297809483	425	hypothetical protein ARALYDRAFT_489995 [	0.725	0.341	0.721	3e-56

>gi|224053983|ref|XP_002298070.1| predicted protein [Populus trichocarpa] gi|222845328|gb|EEE82875.1| predicted protein [Populus trichocarpa]

 Score =  266 bits (679), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 128/161 (79%), Positives = 142/161 (88%), Gaps = 2/161 (1%)

Query: 40  SSLLQNSNDLNDADGEDEVPQPSSPSLKKSEERGIIVVHEVKCKLYVKSSDPADKDTWKD 99
           SS+  N N  +DAD E+E+ QP SPS+KKSEE+GI+ VHEVKCKLYVKSSDPADKDTWKD
Sbjct: 241 SSIPANHNTADDADDENELQQPGSPSVKKSEEKGIVTVHEVKCKLYVKSSDPADKDTWKD 300

Query: 100 RGTGQLSIKCKEGISKGTKESKPTILVRNDVGRVLLNALLYPGIKTNLQKNSIVAIFHTS 159
           +G GQLSIKC+EGI K TKESKPTI+VRNDVG+VLLNALLYPGIKTN QKNS+VAIFHT+
Sbjct: 301 KGPGQLSIKCREGIGKSTKESKPTIVVRNDVGKVLLNALLYPGIKTNPQKNSLVAIFHTA 360

Query: 160 GDDAGGGNNGSAAARTFLIRTKTEEDRNKLATAIQEYAPAS 200
           GDD+  GNN S  ARTFLIRTKTEEDRNKLATAIQEYAP S
Sbjct: 361 GDDS--GNNDSVVARTFLIRTKTEEDRNKLATAIQEYAPTS 399

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742605|emb|CBI34754.3| unnamed protein product [Vitis vinifera]

 Score =  262 bits (670), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 127/165 (76%), Positives = 146/165 (88%), Gaps = 2/165 (1%)

Query: 38  NQSSLLQNSNDLNDADGEDEVPQPSSPSLKKSEERGIIVVHEVKCKLYVKSSDPADKDTW 97
           +QSS+  + N   DADGE++  +P SPS+KK+EE+GIIVVHEVKCKLYVKS+DPADKD W
Sbjct: 242 SQSSVPISHNASEDADGENDAEEPGSPSVKKTEEKGIIVVHEVKCKLYVKSTDPADKDAW 301

Query: 98  KDRGTGQLSIKCKEGISKGTKESKPTILVRNDVGRVLLNALLYPGIKTNLQKNSIVAIFH 157
           KD+GTGQLSIKCKEGI KGTKES+PTI+VRNDVGRVLLNALLYPGIKTN QKNS+VAIFH
Sbjct: 302 KDKGTGQLSIKCKEGIDKGTKESRPTIVVRNDVGRVLLNALLYPGIKTNPQKNSLVAIFH 361

Query: 158 TSGDDAG--GGNNGSAAARTFLIRTKTEEDRNKLATAIQEYAPAS 200
           TSG+  G  GGNN S  ART+LIRTK+EEDRNKLA+AIQEYAP+S
Sbjct: 362 TSGEINGNDGGNNDSVVARTYLIRTKSEEDRNKLASAIQEYAPSS 406

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225426763|ref|XP_002282656.1| PREDICTED: uncharacterized protein LOC100261574 [Vitis vinifera]

 Score =  262 bits (669), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 127/165 (76%), Positives = 146/165 (88%), Gaps = 2/165 (1%)

Query: 38  NQSSLLQNSNDLNDADGEDEVPQPSSPSLKKSEERGIIVVHEVKCKLYVKSSDPADKDTW 97
           +QSS+  + N   DADGE++  +P SPS+KK+EE+GIIVVHEVKCKLYVKS+DPADKD W
Sbjct: 177 SQSSVPISHNASEDADGENDAEEPGSPSVKKTEEKGIIVVHEVKCKLYVKSTDPADKDAW 236

Query: 98  KDRGTGQLSIKCKEGISKGTKESKPTILVRNDVGRVLLNALLYPGIKTNLQKNSIVAIFH 157
           KD+GTGQLSIKCKEGI KGTKES+PTI+VRNDVGRVLLNALLYPGIKTN QKNS+VAIFH
Sbjct: 237 KDKGTGQLSIKCKEGIDKGTKESRPTIVVRNDVGRVLLNALLYPGIKTNPQKNSLVAIFH 296

Query: 158 TSGDDAG--GGNNGSAAARTFLIRTKTEEDRNKLATAIQEYAPAS 200
           TSG+  G  GGNN S  ART+LIRTK+EEDRNKLA+AIQEYAP+S
Sbjct: 297 TSGEINGNDGGNNDSVVARTYLIRTKSEEDRNKLASAIQEYAPSS 341

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356539871|ref|XP_003538416.1| PREDICTED: uncharacterized protein LOC100816975 [Glycine max]

 Score =  260 bits (664), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 124/164 (75%), Positives = 141/164 (85%), Gaps = 1/164 (0%)

Query: 38  NQSSLLQNSNDLNDADGEDEVPQPSSPSLKKSEERGIIVVHEVKCKLYVKSSDPADKDTW 97
           NQS    N N  +D DGE+E+ QPSSPS+KKSEE+G+ VVHEVKCKLYVKSSDPADKD W
Sbjct: 196 NQSLAPSNHNASDDVDGENELEQPSSPSVKKSEEKGVAVVHEVKCKLYVKSSDPADKDVW 255

Query: 98  KDRGTGQLSIKCKEGISKGTKESKPTILVRNDVGRVLLNALLYPGIKTNLQKNSIVAIFH 157
           KD+G GQLSIKCKEG+SK TKESKPTI+VRN+VG++LLNALLYPGIKTNLQKNS+V IFH
Sbjct: 256 KDKGMGQLSIKCKEGVSKATKESKPTIVVRNEVGKILLNALLYPGIKTNLQKNSLVTIFH 315

Query: 158 TSGD-DAGGGNNGSAAARTFLIRTKTEEDRNKLATAIQEYAPAS 200
           TSG+ D  GG+N S  ARTFLIR KTE+DRNKLA+ IQEYAP S
Sbjct: 316 TSGNIDGSGGDNDSVVARTFLIRMKTEDDRNKLASTIQEYAPVS 359

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363808138|ref|NP_001242223.1| uncharacterized protein LOC100788565 [Glycine max] gi|255641344|gb|ACU20949.1| unknown [Glycine max]

 Score =  259 bits (663), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 124/164 (75%), Positives = 142/164 (86%), Gaps = 1/164 (0%)

Query: 38  NQSSLLQNSNDLNDADGEDEVPQPSSPSLKKSEERGIIVVHEVKCKLYVKSSDPADKDTW 97
           NQS    N+N  +D DGE+E+ QPSSPS+KKSEE+G++VVHEVKCKLYVKSSDP DKD W
Sbjct: 195 NQSLAPFNNNASDDVDGENELEQPSSPSVKKSEEKGVVVVHEVKCKLYVKSSDPGDKDAW 254

Query: 98  KDRGTGQLSIKCKEGISKGTKESKPTILVRNDVGRVLLNALLYPGIKTNLQKNSIVAIFH 157
           KD+G GQLSIKCKEG+SK TKESKPTI+VRN+VG+VLLNALLYPGIKTNLQKNS+VAIFH
Sbjct: 255 KDKGMGQLSIKCKEGVSKATKESKPTIVVRNEVGKVLLNALLYPGIKTNLQKNSLVAIFH 314

Query: 158 TSGD-DAGGGNNGSAAARTFLIRTKTEEDRNKLATAIQEYAPAS 200
           TSG+ D  GG+N S  ARTFLIR KTE DRNKLA+ I+EYAP S
Sbjct: 315 TSGNADGSGGDNDSVVARTFLIRMKTENDRNKLASTIKEYAPMS 358

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537265|ref|XP_002509699.1| conserved hypothetical protein [Ricinus communis] gi|223549598|gb|EEF51086.1| conserved hypothetical protein [Ricinus communis]

 Score =  254 bits (649), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 120/147 (81%), Positives = 136/147 (92%), Gaps = 2/147 (1%)

Query: 54  GEDEVPQPSSPSLKKSEERGIIVVHEVKCKLYVKSSDPADKDTWKDRGTGQLSIKCKEGI 113
            ++E+ QPSSPSLKKSEE+GI+VVHEVKCKLYVKS+D +DKDTWKD+G GQLSIKCKEG+
Sbjct: 4   AKNELEQPSSPSLKKSEEKGIVVVHEVKCKLYVKSTDVSDKDTWKDKGMGQLSIKCKEGV 63

Query: 114 SKGTKESKPTILVRNDVGRVLLNALLYPGIKTNLQKNSIVAIFHTSGDDAGGGNNGSAAA 173
           +KGTKESKPTI+VRND GRV+LNALLYPGIKTNLQKNS+VAIFHT+GDD  GG++ S  A
Sbjct: 64  NKGTKESKPTIVVRNDAGRVVLNALLYPGIKTNLQKNSLVAIFHTAGDD--GGDSNSVVA 121

Query: 174 RTFLIRTKTEEDRNKLATAIQEYAPAS 200
           RTFLIRTKTEEDRNKLATAIQEYAP S
Sbjct: 122 RTFLIRTKTEEDRNKLATAIQEYAPES 148

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224074819|ref|XP_002304462.1| predicted protein [Populus trichocarpa] gi|222841894|gb|EEE79441.1| predicted protein [Populus trichocarpa]

 Score =  252 bits (644), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 120/146 (82%), Positives = 132/146 (90%), Gaps = 2/146 (1%)

Query: 55  EDEVPQPSSPSLKKSEERGIIVVHEVKCKLYVKSSDPADKDTWKDRGTGQLSIKCKEGIS 114
           E+E+ QP SPS+KKS E+GI+ VHEVKCKLYVKSSDPA KDTWKD+GTGQLSIKCKEGIS
Sbjct: 366 ENELQQPGSPSVKKSVEKGIVTVHEVKCKLYVKSSDPAVKDTWKDKGTGQLSIKCKEGIS 425

Query: 115 KGTKESKPTILVRNDVGRVLLNALLYPGIKTNLQKNSIVAIFHTSGDDAGGGNNGSAAAR 174
           KG KESKPTI+VRNDVG+VLLNALLYPGIKTN QKNS+VAIFHT+GDD+  GNN S  AR
Sbjct: 426 KGAKESKPTIVVRNDVGKVLLNALLYPGIKTNPQKNSLVAIFHTAGDDS--GNNDSVVAR 483

Query: 175 TFLIRTKTEEDRNKLATAIQEYAPAS 200
           TFL+R KTEEDRNKLATAIQEYAP S
Sbjct: 484 TFLLRMKTEEDRNKLATAIQEYAPTS 509

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452376|ref|XP_004143935.1| PREDICTED: uncharacterized protein LOC101205107 [Cucumis sativus]

 Score =  240 bits (613), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 116/152 (76%), Positives = 133/152 (87%), Gaps = 6/152 (3%)

Query: 52  ADGEDEVPQPSSPSLKKSEERGIIVVHEVKCKLYVKSSDPADKDTWKDRGTGQLSIKCKE 111
            D E+++ QPSSPS+KKSEE+G++VVHEVKCKLYVKS+DPADKD WKD+GTGQLSIKCKE
Sbjct: 201 VDDENDLEQPSSPSVKKSEEKGVVVVHEVKCKLYVKSTDPADKDAWKDKGTGQLSIKCKE 260

Query: 112 GISKGTKESKPTILVRNDVGRVLLNALLYPGIKTNLQKNSIVAIFHTSGDDAGGGNNGS- 170
           GISKGTKESKPTIL+RNDVGR+LLNAL+YPGIKTN+QKNSIVAIFHTS +  G  N+ S 
Sbjct: 261 GISKGTKESKPTILIRNDVGRLLLNALIYPGIKTNIQKNSIVAIFHTSSE--GNTNDNSD 318

Query: 171 ---AAARTFLIRTKTEEDRNKLATAIQEYAPA 199
                ART+LIR KTE+DRNKLATAIQE  PA
Sbjct: 319 KDKVVARTYLIRLKTEDDRNKLATAIQECTPA 350

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449495900|ref|XP_004159979.1| PREDICTED: protein HAPLESS 2-like [Cucumis sativus]

 Score =  238 bits (607), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 116/152 (76%), Positives = 133/152 (87%), Gaps = 6/152 (3%)

Query: 52  ADGEDEVPQPSSPSLKKSEERGIIVVHEVKCKLYVKSSDPADKDTWKDRGTGQLSIKCKE 111
            D E+++ QPSSPS+KKSEE+G++VVHEVKCKLYVKS+DPADKD WKD+GTGQLSIKCKE
Sbjct: 683 VDDENDLEQPSSPSVKKSEEKGVVVVHEVKCKLYVKSTDPADKDAWKDKGTGQLSIKCKE 742

Query: 112 GISKGTKESKPTILVRNDVGRVLLNALLYPGIKTNLQKNSIVAIFHTSGDDAGGGNNGS- 170
           GISKGTKESKPTIL+RNDVGR+LLNAL+YPGIKTN+QKNSIVAIFHTS +  G  N+ S 
Sbjct: 743 GISKGTKESKPTILIRNDVGRLLLNALIYPGIKTNIQKNSIVAIFHTSSE--GNTNDNSD 800

Query: 171 ---AAARTFLIRTKTEEDRNKLATAIQEYAPA 199
                ART+LIR KTE+DRNKLATAIQE  PA
Sbjct: 801 KDKVVARTYLIRLKTEDDRNKLATAIQECTPA 832

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297809483|ref|XP_002872625.1| hypothetical protein ARALYDRAFT_489995 [Arabidopsis lyrata subsp. lyrata] gi|297318462|gb|EFH48884.1| hypothetical protein ARALYDRAFT_489995 [Arabidopsis lyrata subsp. lyrata]

 Score =  223 bits (568), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 109/151 (72%), Positives = 128/151 (84%), Gaps = 6/151 (3%)

Query: 50  NDADGEDEVPQPSSPSLKKSEERGIIVVHEVKCKLYVKSSDPADKDTWKDRGTGQLSIKC 109
           +DADGEDE PQPSSPS+KK+EE+G+ VVHEVKCKLYVKS+DP D   WKD+GTG L IKC
Sbjct: 281 DDADGEDEQPQPSSPSVKKAEEKGVTVVHEVKCKLYVKSNDPTDIG-WKDKGTGNLYIKC 339

Query: 110 KEGISKGTKESKPTILVRNDVGRVLLNALLYPGIKTNLQKNSIVAIFHTSGDDAGGGNNG 169
           KEG+ KGTKESKPTILVRNDVG++LLNALLY GIKT+ QKN++VAIFH+S D     +N 
Sbjct: 340 KEGVDKGTKESKPTILVRNDVGKLLLNALLYTGIKTSPQKNALVAIFHSSED-----SNE 394

Query: 170 SAAARTFLIRTKTEEDRNKLATAIQEYAPAS 200
           +   RTFLIRTKT + R+KLATAIQEYAP+S
Sbjct: 395 NVTPRTFLIRTKTADARDKLATAIQEYAPSS 425

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	200
TAIR|locus:2139752	443	AT4G11790 "AT4G11790" [Arabido	0.725	0.327	0.701	8.8e-57
UNIPROTKB|F1MZD9	465	NUP50 "Uncharacterized protein	0.685	0.294	0.270	5.3e-05
UNIPROTKB|B4E2D3	218	NUP50 "cDNA FLJ54237, highly s	0.685	0.628	0.277	6.5e-05
UNIPROTKB|Q5F473	468	NUP50 "Uncharacterized protein	0.77	0.329	0.270	0.00031
UNIPROTKB|Q9UKX7	468	NUP50 "Nuclear pore complex pr	0.685	0.292	0.277	0.00031
POMBASE|SPBC365.13c	399	hba1 "Ran GTPase binding prote	0.635	0.318	0.281	0.00058
ZFIN|ZDB-GENE-030131-1689	422	nup50 "nucleoporin 50" [Danio	0.71	0.336	0.289	0.00063

TAIR|locus:2139752 AT4G11790 "AT4G11790" [Arabidopsis thaliana (taxid:3702)]

 Score = 521 (188.5 bits), Expect = 8.8e-57, Sum P(2) = 8.8e-57
 Identities = 106/151 (70%), Positives = 121/151 (80%)

Query:    50 NDADGEDEVPQPSSPSLKKSEERGIIVVHEVKCKLYVKSSDPADKDTWKDRGTGQLSIKC 109
             +DADG DE  QPSSPS+KK+EE+GI VVHEVKCKLYVKSSDPADK  WKD+GTG L IKC
Sbjct:   299 DDADGGDEQSQPSSPSVKKTEEKGITVVHEVKCKLYVKSSDPADKG-WKDKGTGNLYIKC 357

Query:   110 KEGISKGTKESKPTILVRNDVGRVLLNALLYPGIKTNLQKNSIVAIFHTXXXXXXXXXXX 169
             KEG+ KGTKESKPTILVRNDVG++LLNALLY G+KT+ QKN++VAIFH+           
Sbjct:   358 KEGVDKGTKESKPTILVRNDVGKLLLNALLYAGMKTSPQKNALVAIFHSSDDSNENVTP- 416

Query:   170 XXXXRTFLIRTKTEEDRNKLATAIQEYAPAS 200
                 RTFLIRTK  E R+ LATAIQEYAP+S
Sbjct:   417 ----RTFLIRTKNAEARDNLATAIQEYAPSS 443

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0046907 "intracellular transport" evidence=IEA

UNIPROTKB|F1MZD9 NUP50 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 118 (46.6 bits), Expect = 5.3e-05, P = 5.3e-05
 Identities = 42/155 (27%), Positives = 68/155 (43%)

Query:    44 QNSNDLNDADGEDEVPQPSSPSLKKSEERGIIVVHEVKCKLYVKSSDPADKDTWKDRGTG 103
             Q  +  N+  G DE      P +  +E +     +  KCKL+ K      ++ +K++G G
Sbjct:   322 QAESGSNECKGGDEEENDEPPKVVVTEVKEDDAFYSKKCKLFYKK-----ENEFKEKGVG 376

Query:   104 QLSIKCKEGISKGTKESKPTILVRND--VGRVLLNALLYPGIK-TNLQKNSIVAIFHTXX 160
              L +K        T   K  +LVR D  +G +LLN L+ P +  T + KN+++ +     
Sbjct:   377 TLHLK-------PTANQKTQLLVRADTNLGNILLNILIVPSMPCTRMGKNNVLIVCVPNP 429

Query:   161 XXXXXXXXXXXXXRTFLIRTKTEEDRNKLATAIQE 195
                           T LIR KT ED ++L   + E
Sbjct:   430 PVDEKNAATPV---TMLIRVKTSEDADELHKILLE 461

GO:0046907 "intracellular transport" evidence=IEA

GO:0005643 "nuclear pore" evidence=IEA

UNIPROTKB|B4E2D3 NUP50 "cDNA FLJ54237, highly similar to Nucleoporin 50 kDa" [Homo sapiens (taxid:9606)]

 Score = 112 (44.5 bits), Expect = 6.5e-05, P = 6.5e-05
 Identities = 43/155 (27%), Positives = 66/155 (42%)

Query:    44 QNSNDLNDADGEDEVPQPSSPSLKKSEERGIIVVHEVKCKLYVKSSDPADKDTWKDRGTG 103
             Q   D  +  G DE      P +  +E +     +  KCKL+ K     D + +K++G G
Sbjct:    75 QAEGDSGECKGGDEEENDEPPKVVVTEVKEEDAFYSKKCKLFYKK----DNE-FKEKGIG 129

Query:   104 QLSIKCKEGISKGTKESKPTILVRND--VGRVLLNALLYPGIK-TNLQKNSIVAIFHTXX 160
              L +K        T   K  +LVR D  +G +LLN L+ P +  T   KN+++ +     
Sbjct:   130 TLHLK-------PTANQKTQLLVRADTNLGNILLNVLIPPNMPCTRTGKNNVLIVCVPNP 182

Query:   161 XXXXXXXXXXXXXRTFLIRTKTEEDRNKLATAIQE 195
                           T LIR KT ED ++L   + E
Sbjct:   183 PIDEKNATMPV---TMLIRVKTSEDADELHKILLE 214

GO:0046907 "intracellular transport" evidence=IEA

UNIPROTKB|Q5F473 NUP50 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 112 (44.5 bits), Expect = 0.00031, P = 0.00031
 Identities = 47/174 (27%), Positives = 80/174 (45%)

Query:    25 DMQRAESSRQHVRNQSSLLQNSNDLNDADGEDEVPQPSSPSLKKSEERGIIVVHEVKCKL 84
             D  +A+S+     N       S + +D  GE+E  +P  P +  +E +     +  KCKL
Sbjct:   308 DANQAKSATAVSTNALEAQTESGNNDDKGGEEEEEEP--PKVIVNEIKEDDAFYSKKCKL 365

Query:    85 YVKSSDPADKDTWKDRGTGQLSIKCKEGISKGTKESKPTILVRND--VGRVLLNALLYPG 142
             + K     D + +K++G G L +K       G ++++  +LVR D  +G +LLN L+ P 
Sbjct:   366 FYKK----DNE-FKEKGVGTLHLK-----PAGNEKTQ--LLVRADTNLGNILLNVLIPPK 413

Query:   143 IK-TNLQKNSIVAIFHTXXXXXXXXXXXXXXXRTFLIRTKTEEDRNKLATAIQE 195
             +  T   KN+++ +                   T LIR KT ED ++L   + E
Sbjct:   414 MPCTRTGKNNVLIVCVPNPPIDENNPTVPV---TMLIRVKTSEDADELHKILLE 464

GO:0005643 "nuclear pore" evidence=IEA

GO:0046907 "intracellular transport" evidence=IEA

UNIPROTKB|Q9UKX7 NUP50 "Nuclear pore complex protein Nup50" [Homo sapiens (taxid:9606)]

 Score = 112 (44.5 bits), Expect = 0.00031, P = 0.00031
 Identities = 43/155 (27%), Positives = 66/155 (42%)

Query:    44 QNSNDLNDADGEDEVPQPSSPSLKKSEERGIIVVHEVKCKLYVKSSDPADKDTWKDRGTG 103
             Q   D  +  G DE      P +  +E +     +  KCKL+ K     D + +K++G G
Sbjct:   325 QAEGDSGECKGGDEEENDEPPKVVVTEVKEEDAFYSKKCKLFYKK----DNE-FKEKGIG 379

Query:   104 QLSIKCKEGISKGTKESKPTILVRND--VGRVLLNALLYPGIK-TNLQKNSIVAIFHTXX 160
              L +K        T   K  +LVR D  +G +LLN L+ P +  T   KN+++ +     
Sbjct:   380 TLHLK-------PTANQKTQLLVRADTNLGNILLNVLIPPNMPCTRTGKNNVLIVCVPNP 432

Query:   161 XXXXXXXXXXXXXRTFLIRTKTEEDRNKLATAIQE 195
                           T LIR KT ED ++L   + E
Sbjct:   433 PIDEKNATMPV---TMLIRVKTSEDADELHKILLE 464

GO:0046907 "intracellular transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0051028 "mRNA transport" evidence=IEA

GO:0005643 "nuclear pore" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0031965 "nuclear membrane" evidence=IDA

GO:0005654 "nucleoplasm" evidence=TAS

GO:0005975 "carbohydrate metabolic process" evidence=TAS

GO:0008645 "hexose transport" evidence=TAS

GO:0010827 "regulation of glucose transport" evidence=TAS

GO:0015758 "glucose transport" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0019221 "cytokine-mediated signaling pathway" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

POMBASE|SPBC365.13c hba1 "Ran GTPase binding protein Hba1" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 109 (43.4 bits), Expect = 0.00058, P = 0.00058
 Identities = 40/142 (28%), Positives = 70/142 (49%)

Query:    15 QQQSMTTEPLDMQRAESSRQHVRNQS-SLLQNSNDLNDAD-GEDEVPQPSSPSLKKSE-- 70
             +    ++E  D   A +S +   NQ  S  +  ++  +AD G  +  + +   L  SE  
Sbjct:   210 ENDKKSSENFDELLANTSAKAFENQKGSAGETKSEPKEADKGSGDSTKSTMHQLSDSEII 269

Query:    71 --ERGIIVVHEVKCKLYVKSSDPADKDTWKDRGTGQLSIKCKEGISKGTKESKPTILVRN 128
               E     +  V+ +LYV + +   K TWK+RG G L +   +   +G+   +  +L+RN
Sbjct:   270 TGEEEEESIFSVRARLYVVADE---KKTWKERGQGILKVNVPK--QRGSGSGR--LLMRN 322

Query:   129 D-VGRVLLNALLYPGI-KTNLQ 148
             D V RV++N  L+ G+ K +LQ
Sbjct:   323 DAVHRVIMNVPLFQGMSKKSLQ 344

GO:0000056 "ribosomal small subunit export from nucleus" evidence=ISO

GO:0005634 "nucleus" evidence=IDA

GO:0005654 "nucleoplasm" evidence=IDA

GO:0008536 "Ran GTPase binding" evidence=ISS

GO:0034599 "cellular response to oxidative stress" evidence=IGI

GO:0046827 "positive regulation of protein export from nucleus" evidence=IMP

GO:0071238 "cellular response to brefeldin A" evidence=IMP

GO:0071313 "cellular response to caffeine" evidence=IMP

GO:1901181 "negative regulation of cellular response to caffeine" evidence=IMP

ZFIN|ZDB-GENE-030131-1689 nup50 "nucleoporin 50" [Danio rerio (taxid:7955)]

 Score = 109 (43.4 bits), Expect = 0.00063, P = 0.00063
 Identities = 48/166 (28%), Positives = 79/166 (47%)

Query:    36 VRNQSSLLQNSNDLN---DADGEDEVPQPSSPSLKKSEERGIIVVHEVKCKLYVKSSDPA 92
             V + SS + NS+  +   D +GED   +P  P +K+ +E+     +  KCKL+ K     
Sbjct:   272 VSSVSSPVVNSDSNSQTADENGEDS-EEPPVPVVKEIKEKDAF--YSKKCKLFYKK---- 324

Query:    93 DKDTWKDRGTGQLSIKCKEGISKGTKESKPTILVRND--VGRVLLNALLYPGIK-TNLQK 149
             D + +K++G G L +K        T ESK  +LVR D  +G +LLN ++   +  +   K
Sbjct:   325 DGE-FKEKGVGTLHLKM-------TTESKLQLLVRADTNLGNILLNIMVPSSMPCSRTGK 376

Query:   150 NSIVAIFHTXXXXXXXXXXXXXXXRTFLIRTKTEEDRNKLATAIQE 195
             N+++ +                     LIR KT ED ++L   +QE
Sbjct:   377 NNVMVVCVPNPPVDDKNPSVPV---PVLIRVKTAEDADQLHRVLQE 419


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.310   0.127   0.349    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      200       185   0.00080  110 3  11 23  0.39    33
                                                     31  0.41    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  583 (62 KB)
  Total size of DFA:  147 KB (2090 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.36u 0.10s 20.46t   Elapsed:  00:00:01
  Total cpu time:  20.36u 0.10s 20.46t   Elapsed:  00:00:01
  Start:  Mon May 20 20:51:25 2013   End:  Mon May 20 20:51:26 2013

GO:0046907 "intracellular transport" evidence=IEA

GO:0005643 "nuclear pore" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	200
cd13170	109	cd13170, RanBD_NUP50, Nucleoporin 50 Ran-binding d	3e-29
cd00835	111	cd00835, RanBD_family, Ran-binding domain	9e-18
smart00160	130	smart00160, RanBD, Ran-binding domain	2e-09
pfam00638	122	pfam00638, Ran_BP1, RanBP1 domain	3e-06
cd13181	111	cd13181, RanBD_NUP2, Nucleoporin 2 Ran-binding dom	4e-05
cd13179	126	cd13179, RanBD_RanBP1, Ran-binding domain	0.001
COG5171	211	COG5171, YRB1, Ran GTPase-activating protein (Ran-	0.002

>gnl|CDD|241324 cd13170, RanBD_NUP50, Nucleoporin 50 Ran-binding domain

 Score =  104 bits (261), Expect = 3e-29
 Identities = 45/124 (36%), Positives = 67/124 (54%), Gaps = 20/124 (16%)

Query: 76  VVHEVKCKLYVKSSDPADKDTWKDRGTGQLSIKCKEGISKGTKESKPTILVRND--VGRV 133
            V+ V+CKL+VK     D   WKD+G G L +K  +  SK        +LVR D  +G++
Sbjct: 3   AVYSVRCKLFVKK----DDGEWKDKGVGTLYLKKVKDTSKA------RLLVRADTSLGKI 52

Query: 134 LLNALLYPGIKTNLQ-KNSIVAIFHTSGDDAGGGNNGSAAARTFLIRTKTEEDRNKLATA 192
           LLN LLYPG+   +  KN+++ +   +    GG         TFL+R KT ED ++L  A
Sbjct: 53  LLNILLYPGMPVTVTGKNNVMLVCVPNPPAEGG-------PVTFLLRVKTPEDADELHKA 105

Query: 193 IQEY 196
           ++E 
Sbjct: 106 LKEL 109

NUP50 acts as a cofactor for the importin-alpha:importin-beta heterodimer, which allows for transportation of many nuclear-targeted proteins through nuclear pore complexes. It is thought to function primarily at the terminal stages of nuclear protein import to coordinate import complex disassembly and importin recycling. NUP50 is composed of a N-terminal NUP50 domain which binds the C-terminus of importin-beta, a central domain which binds importin-beta, and a C-terminal RanBD which binds importin-beta through Ran-GTP. NUP50:importin-alpha then binds cargo and can stimulate nuclear import. The N-terminal domain of NUP50 is also able to displace nuclear localization signals from importin-alpha. NUP50 interacts with cyclin-dependent kinase inhibitor 1B which binds to cyclin E-CDK2 or cyclin D-CDK4 complexes and prevents its activation, thereby controling the cell cycle progression at G1. Ran is a Ras-like nuclear small GTPase, which regulates receptor-mediated transport between the nucleus and the cytoplasm. RanGTP hydrolysis is stimulated by RanGAP together with the Ran-binding domain containing acessory proteins RanBP1 and RanBP2. These accessory proteins stabilize the active GTP-bound form of Ran. RabBD shares structural similarity to the PH domain, but lacks detectable sequence similarity. Length = 109

>gnl|CDD|241232 cd00835, RanBD_family, Ran-binding domain

 Score = 75.0 bits (185), Expect = 9e-18
 Identities = 36/122 (29%), Positives = 53/122 (43%), Gaps = 16/122 (13%)

Query: 76  VVHEVKCKLYVKSSDPADKDTWKDRGTGQLSIKCKEGISKGTKESKPTILVRND-VGRVL 134
           V+   + KLY    D      WK+RG G L I       K  +  K  IL+R + VG+V 
Sbjct: 3   VLFSERAKLYRFDKD---TKEWKERGVGDLKIL------KHKETGKYRILMRREQVGKVC 53

Query: 135 LNALLYPGIK-TNLQKNSIVAIFHTSGDDAGGGNNGSAAARTFLIRTKTEEDRNKLATAI 193
           LN L+ P +K      +    ++    D  G G        TF +R KT E+  +   A+
Sbjct: 54  LNHLITPEMKLKPTAGSDKAVVWTAVDDSDGEGKP-----ETFALRFKTAEEAKEFKKAL 108

Query: 194 QE 195
           +E
Sbjct: 109 EE 110

The RanBD is present in RanBD1, RanBD2, RanBD3, Nuc2, and Nuc50. Most of these proteins have a single RanBD, with the exception of RanBD2 which has 4 RanBDs. Ran is a Ras-like nuclear small GTPase, which regulates receptor-mediated transport between the nucleus and the cytoplasm. RanGTP hydrolysis is stimulated by RanGAP together with the Ran-binding domain containing acessory proteins RanBP1 and RanBP2. These accessory proteins stabilize the active GTP-bound form of Ran. The Ran-binding domain is found in multiple copies in Nuclear pore complex proteins. RabBD shares structural similarity to the PH domain, but lacks detectable sequence similarity. The RanBD proteins of the nuclear pore complex (NPC): nucleoporin 1 (NUP1), NUP2, NUP61, and Nuclear Pore complex Protein 9 (npp-9) are present in the parent, but specific models were not made due to lineage. To date there been no reports of inositol phosphate or phosphoinositide binding by Ran-binding proteins. Length = 111

>gnl|CDD|197549 smart00160, RanBD, Ran-binding domain

 Score = 53.2 bits (128), Expect = 2e-09
 Identities = 34/145 (23%), Positives = 54/145 (37%), Gaps = 21/145 (14%)

Query: 56  DEVPQPSSPSLKKSEERGIIVVHEVKCKLYVKSSDPADKDTWKDRGTGQLSI-KCKEGIS 114
            +   P      K+ E    V+   + KLY  +    DK  WK+RG G L I K K+   
Sbjct: 1   FKPVVPLPDVEVKTGEEDEEVIFSARAKLYRFA---NDKKEWKERGVGDLKILKSKD--- 54

Query: 115 KGTKESKPTILVRND-VGRVLLNALLYPG--IKTNLQKNSIVAIFHT-SGDDAGGGNNGS 170
                 K  I++R D V +V  N  ++    +K     N  +        DD        
Sbjct: 55  ---NGGKVRIVMRRDGVLKVCANHPIFKSMTLKPLAGSNRALKWTPEDFADDIP------ 105

Query: 171 AAARTFLIRTKTEEDRNKLATAIQE 195
                + +R KT+E+ +      +E
Sbjct: 106 -KLVLYAVRFKTKEEADSFKNIFEE 129

Domain of apporximately 150 residues that stabilises the GTP-bound form of Ran (the Ras-like nuclear small GTPase). Length = 130

>gnl|CDD|109686 pfam00638, Ran_BP1, RanBP1 domain

 Score = 44.3 bits (105), Expect = 3e-06
 Identities = 35/129 (27%), Positives = 53/129 (41%), Gaps = 14/129 (10%)

Query: 68  KSEERGIIVVHEVKCKLYVKSSDPADKDTWKDRGTGQLSIKCKEGISKGTKESKPTILVR 127
           KS E    V+  V+ KL+      A+   WK+RG G +       I K   + K  IL+R
Sbjct: 3   KSGEEDEEVLFSVRAKLFRFD---AEVKQWKERGVGDIK------ILKNKDDGKVRILMR 53

Query: 128 ND-VGRVLLNALLYPGIKTNLQKNSIVAIFHTSGDDAGGGNNGSAAARTFLIRTKTEEDR 186
            D V +V  N  + P +       S  +   T+ D A    +G        IR KT+E+ 
Sbjct: 54  RDQVLKVCANHYITPDMTLKPLAGSDRSWVWTAADFA----DGEGKPEQLAIRFKTKEEA 109

Query: 187 NKLATAIQE 195
           +      +E
Sbjct: 110 DSFKKKFEE 118

Length = 122

>gnl|CDD|241335 cd13181, RanBD_NUP2, Nucleoporin 2 Ran-binding domain

 Score = 41.3 bits (97), Expect = 4e-05
 Identities = 32/124 (25%), Positives = 55/124 (44%), Gaps = 20/124 (16%)

Query: 75  IVVHEVKCKLYVKSSDPADK-DTWKDRGTGQLSIKCKEGISKGTKESKPTILVRNDVG-R 132
            V++  + KL +   DP++K   +  +G G+L +       K     K  ILVR +   R
Sbjct: 3   EVLYTKRAKLML--FDPSNKESPYTSKGVGELKLL------KNKDTGKSRILVRAEGSLR 54

Query: 133 VLLNALLYPGIK-TNLQKNSIVAIFHTSGDDAGGGNNGSAAARTFLIRTKTEEDRNKLAT 191
           VLLN L+   +K   +   S+V +   + D             T++I+ KT  D  +L  
Sbjct: 55  VLLNTLVLKDVKYEKMGNGSLVRVPTINSD---------GKIETYVIKVKTAADGEELLK 105

Query: 192 AIQE 195
           A+ +
Sbjct: 106 ALND 109

Yeast protein Nup2 transiently associates with Nuclear pore complexes (NPCs) and when artificially tethered to DNA, can prevent the spread of transcriptional activation or repression between flanking genes, a function termed boundary activity (BA). Nup2 and the Ran guanylyl-nucleotide exchange factor, Prp20, interact at specific chromatin regions and enable the NPC to play an active role in chromatin organization. Nup60p, the nup responsible for anchoring Nup2 and the Mlp proteins to the NPC is required for Nup2-dependent BA. Nup2 contains an N-terminal Nup50 family domain and a C-terminal RanBD. Ran is a Ras-like nuclear small GTPase, which regulates receptor-mediated transport between the nucleus and the cytoplasm. RanGTP hydrolysis is stimulated by RanGAP together with the Ran-binding domain containing acessory proteins RanBP1 and RanBP2. These accessory proteins stabilize the active GTP-bound form of Ran. RabBD shares structural similarity to the PH domain, but lacks detectable sequence similarity. Length = 111

>gnl|CDD|241333 cd13179, RanBD_RanBP1, Ran-binding domain

 Score = 37.3 bits (87), Expect = 0.001
 Identities = 33/133 (24%), Positives = 55/133 (41%), Gaps = 17/133 (12%)

Query: 68  KSEERGIIVVHEVKCKLY--VKSSDPADKDTWKDRGTGQLSIKCKEGISKGTKESKPTIL 125
           K+ E     + +++ KLY     +DP     WK+RGTG + I       K  + +K  +L
Sbjct: 5   KTNEEDEEELFKMRAKLYRFDTENDPP---EWKERGTGDVKIL------KHKETNKIRLL 55

Query: 126 VRND-VGRVLLNALLYPGIKTNLQKNSIVA-IFHTSGDDAGGGNNGSAAARTFLIRTKTE 183
           +R D   ++  N  + P +K      S  A +++T  D A    +         IR    
Sbjct: 56  MRRDKTLKICANHYITPEMKLKPNCGSDRAWVWNTPADFA----DEEPKPELLAIRFANA 111

Query: 184 EDRNKLATAIQEY 196
           E+  K  T  +E 
Sbjct: 112 ENAQKFKTKFEEA 124

RanBP1 interacts specifically with GTP-charged Ran. RanBP1 does not activate GTPase activity of Ran, but does markedly increase GTP hydrolysis by the RanGTPase-activating protein (RanGAP1). In both mammalian cells and in yeast, RanBP1 acts as a negative regulator of Regulator of chromosome condensation 1 (RCC1) by inhibiting RCC1-stimulated guanine nucleotide release from Ran. In addition to Ran, RanBP1 has been shown to interact with Exportin-1 and Importin subunit beta-1 which docks the NPC at the cytoplasmic side of the nuclear pore complex. RabBP1 contains a single RanBD. The RanBD is present in RanBD1, RanBD2, RanBD3, Nuc2, and Nuc50. Most of these proteins have a single RanBD, with the exception of RanBD2 which has 4 RanBDs. Ran is a Ras-like nuclear small GTPase, which regulates receptor-mediated transport between the nucleus and the cytoplasm. RanGTP hydrolysis is stimulated by RanGAP together with the Ran-binding domain containing acessory proteins RanBP1 and RanBP2. These accessory proteins stabilize the active GTP-bound form of Ran. The Ran-binding domain is found in multiple copies in Nuclear pore complex proteins. RabBD shares structural similarity to the PH domain, but lacks detectable sequence similarity. Length = 126

>gnl|CDD|227499 COG5171, YRB1, Ran GTPase-activating protein (Ran-binding protein) [Intracellular trafficking and secretion]

 Score = 37.7 bits (87), Expect = 0.002
 Identities = 40/158 (25%), Positives = 61/158 (38%), Gaps = 25/158 (15%)

Query: 44  QNSNDLNDADGEDEVPQPSSPSLK------------KSEERGIIVVHEVKCKLYVKSSDP 91
           Q+    N     DE   P SP++             K+ E    V+ + + KL+      
Sbjct: 47  QSPFLENAVPEGDEGKGPESPNIHFEPVVELQRVHLKTNEEDETVLFKARAKLFRFD--- 103

Query: 92  ADKDTWKDRGTGQLSIKCKEGISKGTKESKPTILVRND-VGRVLLNALLYPGIKTNLQKN 150
            +   WK+RGTG + I       K  K +K  I +R D   ++  N  + P  K      
Sbjct: 104 EEAKEWKERGTGDMIIL------KHKKTNKARITMRRDKTLKLCANHFINPEFKLQPNVG 157

Query: 151 SIVAIFHTSGDDAGGGNNGSAAARTFLIRTKTEEDRNK 188
           S  +    S  D      G A A+TF IR  +EE+  +
Sbjct: 158 SDRSWVWMSTADTV---EGEAKAQTFAIRFYSEENAKR 192

Length = 211

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	200
cd00835	122	RanBD Ran-binding domain. Ran-binding domain; This	100.0
smart00160	130	RanBD Ran-binding domain. Domain of apporximately	100.0
PF00638	122	Ran_BP1: RanBP1 domain; InterPro: IPR000156 Ran is	99.98
COG5171	211	YRB1 Ran GTPase-activating protein (Ran-binding pr	99.92
KOG2724	487	consensus Nuclear pore complex component NPAP60L/N	99.92
KOG0864	215	consensus Ran-binding protein RANBP1 and related R	99.55
cd00837	104	EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homolog	99.16
KOG0866	327	consensus Ran-binding protein RANBP3 [Intracellula	98.66
PF00568	111	WH1: WH1 domain; InterPro: IPR000697 The EVH1 (WH1	98.55
cd01207	111	Ena-Vasp Enabled-VASP-type homology (EVH1) domain.	98.29
cd01206	111	Homer Homer type EVH1 domain. Homer type EVH1 doma	98.0
smart00461	106	WH1 WASP homology region 1. Region of the Wiskott-	97.63
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	96.41
cd01205	105	WASP WASP-type EVH1 domain. WASP-type EVH1 domain.	94.28
KOG2724	487	consensus Nuclear pore complex component NPAP60L/N	94.09
KOG3671	569	consensus Actin regulatory protein (Wiskott-Aldric	92.02
PF06058	122	DCP1: Dcp1-like decapping family; InterPro: IPR010	90.18

>cd00835 RanBD Ran-binding domain

Probab=100.00  E-value=3.5e-33  Score=217.86  Aligned_cols=116  Identities=34%  Similarity=0.436  Sum_probs=96.8

Q ss_pred             cccCCCCceeEEEEceeEEEecCCCCCCCCCcccceeeEEeeeecCCCCCCCCCceEEEEEcc-ccceeeceeeCCCcee
Q 028997           67 KKSEERGIIVVHEVKCKLYVKSSDPADKDTWKDRGTGQLSIKCKEGISKGTKESKPTILVRND-VGRVLLNALLYPGIKT  145 (200)
Q Consensus        67 ~~~GEEdE~~vf~~RaKLf~~~~~~~~~~~WkERGvG~Lkil~~k~~~~~t~~~k~RlvmR~D-~gkVlLN~~L~~~m~~  145 (200)
                      ..+|||+|++||+.|||||++.++   +++|+|||+|+||||+++.      ++++|||||+| +||||||+.|+++|++
T Consensus         3 v~tGEE~E~~if~~r~KLy~~~~~---~~~WkerG~G~lki~~~k~------~~~~RivmR~d~~~kv~lN~~i~~~~~~   73 (122)
T cd00835           3 VKTGEEDEEVIFSVRAKLYRFDDE---TKEWKERGVGELKILKHKD------TGKYRLLMRRDQVLKLCLNHKLVPGMKL   73 (122)
T ss_pred             cccCCcCcEEEEEEEeEEEEEcCC---CCCCeeceEEEEEEEEcCC------CCcEEEEEEeCCccEEEEeeEecCCcEE
Confidence            458999999999999999977553   3589999999999999973      57999999999 9999999999999999


Q ss_pred             eecC---CcEEEEEEccCCCCCCCCCCCCcceEEEEEcCCHHHHHHHHHHHHHhCC
Q 028997          146 NLQK---NSIVAIFHTSGDDAGGGNNGSAAARTFLIRTKTEEDRNKLATAIQEYAP  198 (200)
Q Consensus       146 ~~~k---~~v~~i~~~~~~~~~e~~~~~~~~~~~liR~kt~e~A~eL~~~i~e~~p  198 (200)
                      +..+   ++++|.  ..+..++++     ++++|+|||+++++|++|.++|+++.+
T Consensus        74 ~~~~~~~k~~~~~--~~d~~~~~~-----~~~~~~lrfk~~~~a~~f~~~~~~~~~  122 (122)
T cd00835          74 QPMGNSDKSIVWA--AMDFSDDEP-----KPETFAIRFKTEEIADEFKEAIEEAKK  122 (122)
T ss_pred             eecCCCCcEEEEE--eeecCCCCC-----cEEEEEEEECCHHHHHHHHHHHHHhhC
Confidence            9843   555443  334322222     789999999999999999999998754

Ran-binding domain; This domain of approximately 150 residues shares structural similarity to the PH domain, but lacks detectable sequence similarity. Ran is a Ras-like nuclear small GTPase, which regulates receptor-mediated transport between the nucleus and the cytoplasm. RanGTP hydrolysis is stimulated by RanGAP together with the Ran-binding domain containing acessory proteins RanBP1 and RanBP2. These accessory proteins stabilize the active GTP-bound form of Ran . The Ran-binding domain is found in multiple copies in Nuclear pore complex proteins.

>smart00160 RanBD Ran-binding domain

Probab=100.00  E-value=3.9e-32  Score=215.09  Aligned_cols=118  Identities=24%  Similarity=0.326  Sum_probs=94.7

Q ss_pred             ccccCCCCceeEEEEceeEEEecCCCCCCCCCcccceeeEEeeeecCCCCCCCCCceEEEEEcc-ccceeeceeeCCCce
Q 028997           66 LKKSEERGIIVVHEVKCKLYVKSSDPADKDTWKDRGTGQLSIKCKEGISKGTKESKPTILVRND-VGRVLLNALLYPGIK  144 (200)
Q Consensus        66 ~~~~GEEdE~~vf~~RaKLf~~~~~~~~~~~WkERGvG~Lkil~~k~~~~~t~~~k~RlvmR~D-~gkVlLN~~L~~~m~  144 (200)
                      ...+|||+|++||+.|||||.+.+.   ++.|+|||+|+||||+++.    + .+++|||||+| +||||||+.|+++|+
T Consensus        11 e~~tgEE~E~~lf~~r~KL~~~~~~---~~~WkerG~G~lki~~~~~----~-~~~~RivmR~~~~~kv~lN~~i~~~~~   82 (130)
T smart00160       11 EVKTGEEDEEVIFSARAKLYRFAND---KKEWKERGVGDLKILKSKD----N-GGKVRIVMRRDGVLKVCANHPIFKSMT   82 (130)
T ss_pred             cccCCCcCeEEEEEEEeEEEEEcCC---CCCCeeccEEEEEEEEcCC----C-CCeEEEEEEECCCceEEeccEecCCcE
Confidence            4468999999999999999965432   2589999999999999974    2 17999999999 999999999999999


Q ss_pred             eeecCCc-EEEEEEccCCCCCCCCCCCCcceEEEEEcCCHHHHHHHHHHHHHh
Q 028997          145 TNLQKNS-IVAIFHTSGDDAGGGNNGSAAARTFLIRTKTEEDRNKLATAIQEY  196 (200)
Q Consensus       145 ~~~~k~~-v~~i~~~~~~~~~e~~~~~~~~~~~liR~kt~e~A~eL~~~i~e~  196 (200)
                      ++..+++ -.++|...+..+++     .++++|+|||+++++|++|+++|+++
T Consensus        83 ~~~~~~~~~~~~~~~~d~~d~~-----~~~~~~~irfk~~e~a~~f~~~~~ea  130 (130)
T smart00160       83 LKPLAGSNRALKWTPEDFADDI-----PKLVLYAVRFKTKEEADSFKNIFEEA  130 (130)
T ss_pred             EeecCCCcceEEEeeeecCCCC-----CceEEEEEEeCCHHHHHHHHHHHHhC
Confidence            9973332 12445433432222     27899999999999999999999874

Domain of apporximately 150 residues that stabilises the GTP-bound form of Ran (the Ras-like nuclear small GTPase).

>PF00638 Ran_BP1: RanBP1 domain; InterPro: IPR000156 Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm

Probab=99.98  E-value=7.1e-32  Score=209.27  Aligned_cols=115  Identities=30%  Similarity=0.507  Sum_probs=88.3

Q ss_pred             ccCCCCceeEEEEceeEEEecCCCCCCCCCcccceeeEEeeeecCCCCCCCCCceEEEEEcc-ccceeeceeeCCCceee
Q 028997           68 KSEERGIIVVHEVKCKLYVKSSDPADKDTWKDRGTGQLSIKCKEGISKGTKESKPTILVRND-VGRVLLNALLYPGIKTN  146 (200)
Q Consensus        68 ~~GEEdE~~vf~~RaKLf~~~~~~~~~~~WkERGvG~Lkil~~k~~~~~t~~~k~RlvmR~D-~gkVlLN~~L~~~m~~~  146 (200)
                      .+|||+|++||+.|||||.+...   .+.|++||+|+|||++++.      ++++|||||+| +||||||+.|+++|+++
T Consensus         3 ~tgEE~E~~l~~~r~Kl~~~~~~---~~~W~erG~G~l~i~~~k~------~~~~RlvmR~d~~~kv~lN~~i~~~m~~~   73 (122)
T PF00638_consen    3 KTGEEDEEILFEVRAKLYRFDKE---DKEWKERGVGTLKILKHKE------TGKYRLVMRRDGTGKVLLNHPIFKGMKLK   73 (122)
T ss_dssp             CHSSSSEEEEEEEEEEEEEEETT---TTEEEEEEEEEEEEEEETT------SCEEEEEEEETTTTEEEEEEE--TTC-EE
T ss_pred             cccccCcEEEEEEEEEEEEEeCC---CCCccccceeEEEEEEccC------CcceEEEEEEcccCceeEEEEecCCceec
Confidence            57999999999999999965432   1599999999999999974      57999999999 99999999999999998


Q ss_pred             e-cCCcEEEEEEccCCCCCCCCCCCCcceEEEEEcCCHHHHHHHHHHHHHh
Q 028997          147 L-QKNSIVAIFHTSGDDAGGGNNGSAAARTFLIRTKTEEDRNKLATAIQEY  196 (200)
Q Consensus       147 ~-~k~~v~~i~~~~~~~~~e~~~~~~~~~~~liR~kt~e~A~eL~~~i~e~  196 (200)
                      . .++...++|...+..++++     ++++|+|||+++++|++|+++|+++
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~irf~~~e~a~~f~~~i~e~  119 (122)
T PF00638_consen   74 PMKGSEKSLVWTAIDYADEEG-----KPETYLIRFKSAEDADEFKKKIEEA  119 (122)
T ss_dssp             ESTTTTTEEEEEEEECTTSSS-----EEEEEEEE-SSHHHHHHHHHHHHHH
T ss_pred             ccccCCcEEEEEeccccCCCC-----ceEEEEEEECCHHHHHHHHHHHHHH
Confidence            6 2221113332222222222     7899999999999999999999986

Ran Binding Protein 1 (RanBP1) has guanine nucleotide dissociation inhibitory activity, specific for the GTP form of Ran and also functions to stimulate Ran GTPase activating protein(GAP)-mediated GTP hydrolysis by Ran. RanBP1 contributes to maintaining the gradient of RanGTP across the nuclear envelope high (GDI activity) or the cytoplasmic levels of RanGTP low (GAP cofactor) []. All RanBP1 proteins contain an approx 150 amino acid residue Ran binding domain. Ran BP1 binds directly to RanGTP with high affinity. There are four sites of contact between Ran and the Ran binding domain. One of these involves binding of the C-terminal segment of Ran to a groove on the Ran binding domain that is analogous to the surface utilised in the EVH1-peptide interaction []. Nup358 contains four Ran binding domains. The structure of the first of these is known [].; GO: 0046907 intracellular transport; PDB: 2Y8F_A 2Y8G_B 2CRF_A 1XKE_A 1RRP_D 2EC1_A 3M1I_B 1K5D_E 3OAN_A 3N7C_A ....

>COG5171 YRB1 Ran GTPase-activating protein (Ran-binding protein) [Intracellular trafficking and secretion]

Probab=99.92  E-value=1.7e-25  Score=184.61  Aligned_cols=113  Identities=24%  Similarity=0.419  Sum_probs=93.7

Q ss_pred             ccCCCCceeEEEEceeEEEecCCCCCCCCCcccceeeEEeeeecCCCCCCCCCceEEEEEcc-ccceeeceeeCCCceee
Q 028997           68 KSEERGIIVVHEVKCKLYVKSSDPADKDTWKDRGTGQLSIKCKEGISKGTKESKPTILVRND-VGRVLLNALLYPGIKTN  146 (200)
Q Consensus        68 ~~GEEdE~~vf~~RaKLf~~~~~~~~~~~WkERGvG~Lkil~~k~~~~~t~~~k~RlvmR~D-~gkVlLN~~L~~~m~~~  146 (200)
                      ++-||||+++|.+|||||+|...   .+.|+|||.|.++|++|+.      ++++||+||+| ++|||+||.|.|.|+++
T Consensus        83 ktneedE~vlfK~RaKLfrFd~~---akewkERgtGd~~~lkhkk------tnk~ri~MrRDktlklcaNH~i~Pe~kl~  153 (211)
T COG5171          83 KTNEEDETVLFKARAKLFRFDEE---AKEWKERGTGDMIILKHKK------TNKARITMRRDKTLKLCANHFINPEFKLQ  153 (211)
T ss_pred             hccccchhhhhhhhhhheeehHH---HHHHHhcCCCcEEEEeccc------cCceEEEEeechhhhhhhhhccCcceecc
Confidence            47899999999999999977553   2699999999999999973      78999999999 99999999999999998


Q ss_pred             e--cCCcEEEEEEc-cCCCCCCCCCCCCcceEEEEEcCCHHHHHHHHHHHHH
Q 028997          147 L--QKNSIVAIFHT-SGDDAGGGNNGSAAARTFLIRTKTEEDRNKLATAIQE  195 (200)
Q Consensus       147 ~--~k~~v~~i~~~-~~~~~~e~~~~~~~~~~~liR~kt~e~A~eL~~~i~e  195 (200)
                      +  +.++- |+|.. .|  ..||++   +..+|+|||.+.++|+.|...++.
T Consensus       154 Pnvgsdrs-Wvw~~taD--~~Egea---~a~tFairF~s~Ena~~FkEefek  199 (211)
T COG5171         154 PNVGSDRS-WVWMSTAD--TVEGEA---KAQTFAIRFYSEENAKRFKEEFEK  199 (211)
T ss_pred             CCCCcccc-eEEEeecc--cccCcc---eeeEEEEeeccHHHHHHHHHHHHH
Confidence            7  33333 45443 33  245533   689999999999999999988764

>KOG2724 consensus Nuclear pore complex component NPAP60L/NUP50 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=3.3e-25  Score=202.40  Aligned_cols=128  Identities=32%  Similarity=0.492  Sum_probs=112.3

Q ss_pred             CCCCCCCCCCCCCCCCcccccCCCCceeEEEEceeEEEecCCCCCCCCCcccceeeEEeeeecCCCCCCCCCceEEEEEc
Q 028997           49 LNDADGEDEVPQPSSPSLKKSEERGIIVVHEVKCKLYVKSSDPADKDTWKDRGTGQLSIKCKEGISKGTKESKPTILVRN  128 (200)
Q Consensus        49 ~~d~d~e~e~~eP~~p~~~~~GEEdE~~vf~~RaKLf~~~~~~~~~~~WkERGvG~Lkil~~k~~~~~t~~~k~RlvmR~  128 (200)
                      +.-+++|.+++.|+++++.+.-|+|.  +|+.|||+||+++     ++++++|||+|||+...       .++..||+|+
T Consensus       357 e~kgedeeeEd~ppkve~~ev~edda--~ysKkckvfykKd-----KEf~dkGvgtl~lkp~~-------~~k~qlLvra  422 (487)
T KOG2724|consen  357 EGKGEDEEEEDVPPKVETVEVQEDDA--VYSKKCKVFYKKD-----KEFTDKGVGTLHLKPND-------RGKFQLLVRA  422 (487)
T ss_pred             cCCCCcccccccCCeeEeecccCccc--hhccccceEEEec-----ccccccccceeeccccc-------ccceeeeehh
Confidence            44557788889999999999888887  9999999999987     59999999999999964       4689999999


Q ss_pred             c--ccceeeceeeCCCceeee-cCCcEEEEEEccCCCCCCCCCCCCcceEEEEEcCCHHHHHHHHHHHHHhCC
Q 028997          129 D--VGRVLLNALLYPGIKTNL-QKNSIVAIFHTSGDDAGGGNNGSAAARTFLIRTKTEEDRNKLATAIQEYAP  198 (200)
Q Consensus       129 D--~gkVlLN~~L~~~m~~~~-~k~~v~~i~~~~~~~~~e~~~~~~~~~~~liR~kt~e~A~eL~~~i~e~~p  198 (200)
                      |  +|+||||.+|+++|+|++ ++|+| +|+|++..     ++.  .++++||||||++.|++|.++|+|+++
T Consensus       423 dtnlGnilLN~Ll~kgMkctr~gknnv-lIvcvp~~-----e~t--~p~TmLIRvktad~aD~L~~kI~E~a~  487 (487)
T KOG2724|consen  423 DTNLGNILLNSLLNKGMKCTRVGKNNV-LIVCVPPS-----EST--EPATMLIRVKTADGADKLTDKILEVAV  487 (487)
T ss_pred             ccchhHHHHHHhhcCCCcceeccCCce-EEEEeCCc-----ccc--cceeEEEEecccchHHHHHHHHHhhcC
Confidence            9  999999999999999998 66777 78887742     222  789999999999999999999999986

>KOG0864 consensus Ran-binding protein RANBP1 and related RanBD domain proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.55  E-value=6.3e-16  Score=132.02  Aligned_cols=116  Identities=22%  Similarity=0.316  Sum_probs=90.2

Q ss_pred             ccccCCCCceeEEEEce-eEEEecCCCCCCCCCcccceeeEEeeeecCCCCCCCCCceEEEEEcc-c-cceeeceeeCCC
Q 028997           66 LKKSEERGIIVVHEVKC-KLYVKSSDPADKDTWKDRGTGQLSIKCKEGISKGTKESKPTILVRND-V-GRVLLNALLYPG  142 (200)
Q Consensus        66 ~~~~GEEdE~~vf~~Ra-KLf~~~~~~~~~~~WkERGvG~Lkil~~k~~~~~t~~~k~RlvmR~D-~-gkVlLN~~L~~~  142 (200)
                      ...++++++..+|..|+ +||++...   .+.|++||+|.++|++|++      ++..|++||+| + ++||.|++|++.
T Consensus        48 ~v~t~e~~e~~~~~~~s~~l~~f~~~---~kq~kerG~g~~~~~kn~~------~g~~r~~m~rdst~~~v~sn~~~~~~  118 (215)
T KOG0864|consen   48 EVKTGEEDEEIIFDQRSEKLYVFDNE---TKQWKERGTGKVKLLKNKD------TGSTRDLMRRDSTKLKVCSNHFIGPS  118 (215)
T ss_pred             hhhccchhhhhhhhhhhhhHHhhhhh---hhhhhccCCcceEeeecCC------CCcceeeeeecccchhhcccccccCc
Confidence            34689999999999996 99976543   3699999999999999984      67899999999 8 899999999999


Q ss_pred             ceeee--cCCcEEEEE-EccCCCCCCCCCCCCcceEEEEEcCCHHH-HHHHHHHHHHh
Q 028997          143 IKTNL--QKNSIVAIF-HTSGDDAGGGNNGSAAARTFLIRTKTEED-RNKLATAIQEY  196 (200)
Q Consensus       143 m~~~~--~k~~v~~i~-~~~~~~~~e~~~~~~~~~~~liR~kt~e~-A~eL~~~i~e~  196 (200)
                      |++++  ..+.- +.+ +..+....     .+...+|+|||++.+. ..-|...|++.
T Consensus       119 ~~~~p~~~~~~~-~~~~~~~d~~~~-----~~~~~~~~i~~~~~e~s~~~f~~~~e~~  170 (215)
T KOG0864|consen  119 FKLEPPAWEEDS-GKWNSLADFSET-----QPKAEKLAIRFAKVESSGKAFKEKIEEA  170 (215)
T ss_pred             ccccCCcccCcc-hhhhhhhhhccc-----ccchhHHHHHhhhhcccchhhHhhhhhh
Confidence            99986  22221 233 23333211     3367899999999988 77777777654

>cd00837 EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain

Probab=99.16  E-value=1.1e-09  Score=83.49  Aligned_cols=100  Identities=15%  Similarity=0.244  Sum_probs=81.1

Q ss_pred             ceeEEEEceeEEEecCCCCCCCCCccc--ceeeEEeeeecCCCCCCCCCceEEEEEcc-ccceeeceeeCCCceeeecCC
Q 028997           74 IIVVHEVKCKLYVKSSDPADKDTWKDR--GTGQLSIKCKEGISKGTKESKPTILVRND-VGRVLLNALLYPGIKTNLQKN  150 (200)
Q Consensus        74 E~~vf~~RaKLf~~~~~~~~~~~WkER--GvG~Lkil~~k~~~~~t~~~k~RlvmR~D-~gkVlLN~~L~~~m~~~~~k~  150 (200)
                      +.+|+..+|+||...++   +++|..+  |+|.|.|.++..      .+.+||+|+.- .++|++|..|+++|.++....
T Consensus         1 ~~~l~~~~a~v~~~~~~---~~~W~~~~~~~g~v~~~~d~~------~~~y~i~~~~~~~~~vv~~~~l~~~~~y~~~~~   71 (104)
T cd00837           1 EQIISTAVAQVYTADPS---TGKWVPASGGTGAVSLVKDST------RNTYRIRGVDIQDQKVIWNQEIYKGLKYTQATP   71 (104)
T ss_pred             CceEEEEEEEEEEECCC---CCceEECCCCeEEEEEEEECC------CCEEEEEEEecCCCeEEEEEEecCCcEEeecCC
Confidence            35799999999965443   3699999  999999999863      45799999999 999999999999999988555


Q ss_pred             cEEEEEEccCCCCCCCCCCCCcceEEEEEcCCHHHHHHHHHHHHHh
Q 028997          151 SIVAIFHTSGDDAGGGNNGSAAARTFLIRTKTEEDRNKLATAIQEY  196 (200)
Q Consensus       151 ~v~~i~~~~~~~~~e~~~~~~~~~~~liR~kt~e~A~eL~~~i~e~  196 (200)
                      .. ..|. .+            -..|-|.|.++++|++|.+.+++.
T Consensus        72 ~F-h~w~-~~------------~~~~GL~F~se~eA~~F~~~v~~~  103 (104)
T cd00837          72 FF-HQWE-DD------------NCVYGLNFASEEEAAQFRKKVLEA  103 (104)
T ss_pred             eE-EEEE-cC------------CcEEEEeeCCHHHHHHHHHHHHhc
Confidence            33 2232 11            148999999999999999999864

EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. The EVH1 domain binds to other proteins at proline rich sequences in either FPPPP or PPXXF motifs. It is found in the cytoskeletal reorganization proteins Enabled VASP, and WASP, and in the synaptic scaffolding protein Homer. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.

>KOG0866 consensus Ran-binding protein RANBP3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.66  E-value=8.8e-09  Score=92.41  Aligned_cols=111  Identities=20%  Similarity=0.396  Sum_probs=80.2

Q ss_pred             cCCCCceeEEEEceeEEEecCCCCCCCCCcccceeeEEeeeecCCCCCCCCCceEEEEEcc-ccceeeceeeCCCceeee
Q 028997           69 SEERGIIVVHEVKCKLYVKSSDPADKDTWKDRGTGQLSIKCKEGISKGTKESKPTILVRND-VGRVLLNALLYPGIKTNL  147 (200)
Q Consensus        69 ~GEEdE~~vf~~RaKLf~~~~~~~~~~~WkERGvG~Lkil~~k~~~~~t~~~k~RlvmR~D-~gkVlLN~~L~~~m~~~~  147 (200)
                      +|||+|..+|.+.||||.+..-   +..|.|||+|.||++.......++  -..|||||.- ++||+||..||..|....
T Consensus       151 tgee~e~n~~d~~ck~f~f~k~---~~sw~e~g~~~lr~n~~as~~~~~--~~~r~vfrt~~slrv~~n~kv~~~m~~ek  225 (327)
T KOG0866|consen  151 TGEEDESNKLDMPCKLFAFDKP---SQSWVERGRSNLRDNDMASTGDGT--TQSRLVFRTSSSLRVILNTKVWAAMQIEK  225 (327)
T ss_pred             cCccCccceeccchhhhhcccc---chhhhhhccccccchhhhhccCCc--ccceeEEeccCcceeecchHHHHHHHHhh
Confidence            6999999999999999954321   247999999999999865322222  2589999999 999999999999999987


Q ss_pred             -cCCcEEEEEEccCCCCCCCCCCCCcceEEEEEcCCHHHHHHHHHHHH
Q 028997          148 -QKNSIVAIFHTSGDDAGGGNNGSAAARTFLIRTKTEEDRNKLATAIQ  194 (200)
Q Consensus       148 -~k~~v~~i~~~~~~~~~e~~~~~~~~~~~liR~kt~e~A~eL~~~i~  194 (200)
                       .+.+++ +.. .+.   |+.    ....|+++++. ..-+++++.+-
T Consensus       226 ~sq~~ir-~~a-~~~---e~~----~v~vFl~~~~~-~rtd~i~~s~~  263 (327)
T KOG0866|consen  226 ASQKSIR-ITA-MDT---EGQ----GVKVFLISASS-KRTDQIYKSLS  263 (327)
T ss_pred             hccccee-ecc-ccc---cCC----cceEEEeeccc-cchhhhhhhhh
Confidence             444453 321 221   121    23689999885 45566666543

>PF00568 WH1: WH1 domain; InterPro: IPR000697 The EVH1 (WH1, RanBP1-WASP) domain is found in multi-domain proteins implicated in a diverse range of signalling, nuclear transport and cytoskeletal events

Probab=98.55  E-value=3e-06  Score=65.09  Aligned_cols=100  Identities=19%  Similarity=0.329  Sum_probs=79.0

Q ss_pred             eeEEEEceeEEEecCCCCCCCCCcc-cceeeEEeeeecCCCCCCCCCceEEEEEcc-ccceeeceeeCCCceeeecCCcE
Q 028997           75 IVVHEVKCKLYVKSSDPADKDTWKD-RGTGQLSIKCKEGISKGTKESKPTILVRND-VGRVLLNALLYPGIKTNLQKNSI  152 (200)
Q Consensus        75 ~~vf~~RaKLf~~~~~~~~~~~WkE-RGvG~Lkil~~k~~~~~t~~~k~RlvmR~D-~gkVlLN~~L~~~m~~~~~k~~v  152 (200)
                      .+|+..+|.||.-.++.  +.+|.- .|.|.|.+.++.     + ...+||+++.= .+++++|..|+++|.|+......
T Consensus         9 ~~i~~~vA~v~~~~p~~--~~~W~~~~~~g~v~~v~d~-----~-~~~y~I~~~~~~~~~~v~e~~l~~~~~Y~~~~~~F   80 (111)
T PF00568_consen    9 QSIATAVAQVYQADPDT--KRQWSPVKGTGVVCFVKDN-----S-RRSYFIRLYDLQDGKVVWEQELYPGFVYTKARPFF   80 (111)
T ss_dssp             EEEEEEEEEEEEEETTT--SESEEESSSEEEEEEEEET-----T-TTEEEEEEEETTTTEEEEEEEESTT-EEEEESSSE
T ss_pred             eEEEEEEEEEEEEEcCC--CCcEeeCCeEEEEEEEEEC-----C-CCEEEEEEEEccccEEEEEeEecCCCEEEeCCCcE
Confidence            68999999999543321  135999 999999999975     2 45789999886 99999999999999999866654


Q ss_pred             EEEEEccCCCCCCCCCCCCcceEEEEEcCCHHHHHHHHHHHHHh
Q 028997          153 VAIFHTSGDDAGGGNNGSAAARTFLIRTKTEEDRNKLATAIQEY  196 (200)
Q Consensus       153 ~~i~~~~~~~~~e~~~~~~~~~~~liR~kt~e~A~eL~~~i~e~  196 (200)
                       -.|. .+           . ..|-|.|.++++|++|.+.|++.
T Consensus        81 -h~f~-~~-----------~-~~~GLnF~se~eA~~F~~~v~~~  110 (111)
T PF00568_consen   81 -HQFE-DD-----------D-CVYGLNFASEEEADQFYKKVQEA  110 (111)
T ss_dssp             -EEEE-ET-----------T-CEEEEEESSHHHHHHHHHHHHHH
T ss_pred             -EEEE-eC-----------C-eEEEEecCCHHHHHHHHHHHhcc
Confidence             2233 22           1 39999999999999999999875

This domain of around 115 amino acids is present in species ranging from yeast to mammals. Many EVH1-containing proteins associate with actin-based structures and play a role in cytoskeletal organisation. EVH1 domains recognise and bind the proline-rich motif FPPPP with low-affinity, further interactions then form between flanking residues [][]. WASP family proteins contain a EVH1 (WH1) in their N-terminals which bind proline-rich sequences in the WASP interacting protein. Proteins of the RanBP1 family contain a WH1 domain in their N-terminal region, which seems to bind a different sequence motif present in the C-terminal part of RanGTP protein [,]. Tertiary structure of the WH1 domain of the Mena protein revealed structure similarities with the pleckstrin homology (PH) domain. The overall fold consists of a compact parallel beta-sandwich, closed along one edge by a long alpha-helix. A highly conserved cluster of three surface-exposed aromatic side-chains forms the recognition site for the molecules target ligands. [].; GO: 0005515 protein binding; PDB: 1I2H_A 1DDV_A 1DDW_A 1EGX_A 3SYX_A 1TJ6_B 1XOD_B 1EVH_A 1I7A_B 2JP2_A ....

>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain

Probab=98.29  E-value=1.4e-05  Score=62.31  Aligned_cols=101  Identities=15%  Similarity=0.254  Sum_probs=77.5

Q ss_pred             ceeEEEEceeEEEecCCCCCCCCCccccee-----eEEeeeecCCCCCCCCCceEEEEEcc-ccceeeceeeCCCceeee
Q 028997           74 IIVVHEVKCKLYVKSSDPADKDTWKDRGTG-----QLSIKCKEGISKGTKESKPTILVRND-VGRVLLNALLYPGIKTNL  147 (200)
Q Consensus        74 E~~vf~~RaKLf~~~~~~~~~~~WkERGvG-----~Lkil~~k~~~~~t~~~k~RlvmR~D-~gkVlLN~~L~~~m~~~~  147 (200)
                      |..|+.+||.+|...+.   .+.|---|-|     .+.|..+..      .+-+||+=|+- -+++++|..|+++|+|+.
T Consensus         1 e~~i~~~rA~Vm~~d~~---tk~W~P~~~~~~~ls~V~~~~~~~------~~~yrIvg~~~~~~~~v~e~~l~~~l~y~k   71 (111)
T cd01207           1 EQSICQARASVMVYDDS---NKKWVPAGGGSQGFSRVQIYHHPR------NNTFRVVGRKLQDHQVVINCAIVKGLKYNQ   71 (111)
T ss_pred             CCceEEEEEEeeEEcCC---CCcEEcCCCCCCCcceEEEEEcCC------CCEEEEEEeecCCCcEEEEEEecCCceeee
Confidence            46799999999954442   2579987764     677777652      45799999987 899999999999999988


Q ss_pred             cCCcEEEEEEccCCCCCCCCCCCCcceEEEEEcCCHHHHHHHHHHHHHhC
Q 028997          148 QKNSIVAIFHTSGDDAGGGNNGSAAARTFLIRTKTEEDRNKLATAIQEYA  197 (200)
Q Consensus       148 ~k~~v~~i~~~~~~~~~e~~~~~~~~~~~liR~kt~e~A~eL~~~i~e~~  197 (200)
                      ...... -|. .+            -..|=|-|.++++|..|...|+..+
T Consensus        72 ~~p~Fh-~w~-~~------------~~v~GLnF~Se~eA~~F~~~v~~Al  107 (111)
T cd01207          72 ATPTFH-QWR-DA------------RQVYGLNFGSKEDATMFASAMLSAL  107 (111)
T ss_pred             cCCcce-eee-cC------------CeEEeeccCCHHHHHHHHHHHHHHH
Confidence            555331 122 11            1699999999999999999998764

Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.

>cd01206 Homer Homer type EVH1 domain

Probab=98.00  E-value=5.6e-05  Score=58.75  Aligned_cols=103  Identities=12%  Similarity=0.233  Sum_probs=76.4

Q ss_pred             ceeEEEEceeEEEecCCCCCCCCCcccceeeEEee--eecCCCCCCCCCceEEEEEccccceeeceeeCCCceeeecCCc
Q 028997           74 IIVVHEVKCKLYVKSSDPADKDTWKDRGTGQLSIK--CKEGISKGTKESKPTILVRNDVGRVLLNALLYPGIKTNLQKNS  151 (200)
Q Consensus        74 E~~vf~~RaKLf~~~~~~~~~~~WkERGvG~Lkil--~~k~~~~~t~~~k~RlvmR~D~gkVlLN~~L~~~m~~~~~k~~  151 (200)
                      |..||+.||.+|...+.  .++.|.--|-+.++|.  .+.     + ..-+|||=|.+ .+||+|..|.++|+++....+
T Consensus         3 E~~I~~arA~V~~yd~~--tKk~WvPs~~~~~~V~~y~~~-----~-~ntfRIi~~~~-~~~iINc~i~~~~~y~kas~~   73 (111)
T cd01206           3 EQPIFSTRAHVFQIDPK--TKKNWIPASKHAVTVSYFYDS-----T-RNVYRIISVGG-TKAIINSTITPNMTFTKTSQK   73 (111)
T ss_pred             ccccceeeeEEEEECCC--CcceeEeCCCCceeEEEEecC-----C-CcEEEEEEecC-cEEEEeccccCCcceeecccc
Confidence            67799999999965442  2468998887755554  443     3 55799999876 489999999999999985543


Q ss_pred             EEEEEEccCCCCCCCCCCCCcceEEEEEcCCHHHHHHHHHHHHHhC
Q 028997          152 IVAIFHTSGDDAGGGNNGSAAARTFLIRTKTEEDRNKLATAIQEYA  197 (200)
Q Consensus       152 v~~i~~~~~~~~~e~~~~~~~~~~~liR~kt~e~A~eL~~~i~e~~  197 (200)
                      .-. |  .|.    .     .-..|=|-|.++++|..|...|++..
T Consensus        74 FhQ-W--rD~----R-----~~tVyGLnF~Sk~ea~~F~~~f~~~~  107 (111)
T cd01206          74 FGQ-W--ADS----R-----ANTVYGLGFSSEQQLTKFAEKFQEVK  107 (111)
T ss_pred             ccc-c--ccc----c-----cceeeecccCCHHHHHHHHHHHHHHH
Confidence            311 1  121    0     12789999999999999999998864

Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.

>smart00461 WH1 WASP homology region 1

Probab=97.63  E-value=0.0017  Score=49.64  Aligned_cols=102  Identities=14%  Similarity=0.209  Sum_probs=72.0

Q ss_pred             ceeEEEEceeEEEecCCCCCCCCCccccee-eEEeeeecCCCCCCCCCceEEEEEccccceeeceeeCCCceeeecCCcE
Q 028997           74 IIVVHEVKCKLYVKSSDPADKDTWKDRGTG-QLSIKCKEGISKGTKESKPTILVRNDVGRVLLNALLYPGIKTNLQKNSI  152 (200)
Q Consensus        74 E~~vf~~RaKLf~~~~~~~~~~~WkERGvG-~Lkil~~k~~~~~t~~~k~RlvmR~D~gkVlLN~~L~~~m~~~~~k~~v  152 (200)
                      +.+++..++-++...+.   .+.|.-.|.| .+.|.+...    ....-.||+-+...-+|++|..|+++|+++......
T Consensus         3 ~~~~~~~~avV~~y~~~---~~~W~~~~~gg~~~~~~~~~----~~~~~~ri~~~~~~~~vv~e~ely~~~~y~~~~~~F   75 (106)
T smart00461        3 SQCIILARAVVQLYDAD---TKKWVPTGEGGAANLVIDKN----QRSYFFRIVGIKGQDKVIWNQELYKNFKYNQATPTF   75 (106)
T ss_pred             CCCEEEEEEEEEEEeCC---CCCeEECCCCCEEEEEEEec----CCeEEEEEEEecCCCeEEEEEeccCCCEEeecCCce
Confidence            34566677766633222   1469999999 788877542    124457888777622999999999999999866543


Q ss_pred             EEEEEccCCCCCCCCCCCCcceEEEEEcCCHHHHHHHHHHHHHh
Q 028997          153 VAIFHTSGDDAGGGNNGSAAARTFLIRTKTEEDRNKLATAIQEY  196 (200)
Q Consensus       153 ~~i~~~~~~~~~e~~~~~~~~~~~liR~kt~e~A~eL~~~i~e~  196 (200)
                      . .|. .+            -..|=|-|.++++|++|.+.|.+.
T Consensus        76 h-~f~-~~------------~~~~GLnF~se~EA~~F~~~v~~~  105 (106)
T smart00461       76 H-QWA-DD------------KCVYGLNFASEEEAKKFRKKVLKA  105 (106)
T ss_pred             E-EEE-eC------------CeEEEeecCCHHHHHHHHHHHHhc
Confidence            1 122 11            158999999999999999999864

Region of the Wiskott-Aldrich syndrome protein (WASp) that contains point mutations in the majority of patients with WAS. Unknown function. Ena-like WH1 domains bind polyproline-containing peptides, and that Homer contains a WH1 domain.

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=96.41  E-value=0.13  Score=52.05  Aligned_cols=105  Identities=12%  Similarity=0.199  Sum_probs=73.2

Q ss_pred             CCceeEEEEceeEEEecCCCCCCCCCcccceee-EEeeeecCCCCCCCCCceEEEEEcc-ccceeeceeeCCCceeeecC
Q 028997           72 RGIIVVHEVKCKLYVKSSDPADKDTWKDRGTGQ-LSIKCKEGISKGTKESKPTILVRND-VGRVLLNALLYPGIKTNLQK  149 (200)
Q Consensus        72 EdE~~vf~~RaKLf~~~~~~~~~~~WkERGvG~-Lkil~~k~~~~~t~~~k~RlvmR~D-~gkVlLN~~L~~~m~~~~~k  149 (200)
                      +..+.++...|+||++...   ...|.-.+-.. ++|..         .++.-..++-. ..+.+|++.|.+.|++...-
T Consensus       245 ~~~~~~~~~~~~L~l~d~~---~~~f~lq~~~v~~~i~~---------~~~~~y~l~i~~~~~~~l~~~v~s~mNp~F~~  312 (794)
T PF08553_consen  245 EAGEILASESAELYLYDPP---TGKFVLQDSSVTAKIIE---------TGKWEYWLQIEGKDKIWLGQPVSSDMNPVFNF  312 (794)
T ss_pred             CccceeeeeeEEEEEEcCC---CceEEEecCcEEEEEEE---------cCCeEEEEEEecCCceEEeeeccCCcCeEEEc
Confidence            4444899999999965332   24787665332 44544         33555556666 56778999999999998866


Q ss_pred             CcEEEEEEccCCCCCCCCCCCCcceEEEEEcCCHHHHHHHHHHHHHh
Q 028997          150 NSIVAIFHTSGDDAGGGNNGSAAARTFLIRTKTEEDRNKLATAIQEY  196 (200)
Q Consensus       150 ~~v~~i~~~~~~~~~e~~~~~~~~~~~liR~kt~e~A~eL~~~i~e~  196 (200)
                      ....|+|.....  + +     ..-.|+|||++.++-.+|...+...
T Consensus       313 e~lSFiFN~~~~--~-~-----~~~sw~lkF~~~~~~~~F~~~~~~~  351 (794)
T PF08553_consen  313 EHLSFIFNYYTE--D-G-----SAYSWLLKFKDQEDYERFQEKFMKC  351 (794)
T ss_pred             ceeEEEEEeEcC--C-C-----ceEEEEEEeCCHHHHHHHHHHHHHH
Confidence            666677775432  1 1     4579999999999999988877543

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>cd01205 WASP WASP-type EVH1 domain

Probab=94.28  E-value=1.9  Score=33.37  Aligned_cols=100  Identities=11%  Similarity=0.153  Sum_probs=71.0

Q ss_pred             eeEEEEceeEEEecCCCCCCCCCcccceeeEEeeeecCCCCCCCCCceEEEEEccccceeeceeeCCCceeeecCCcEEE
Q 028997           75 IVVHEVKCKLYVKSSDPADKDTWKDRGTGQLSIKCKEGISKGTKESKPTILVRNDVGRVLLNALLYPGIKTNLQKNSIVA  154 (200)
Q Consensus        75 ~~vf~~RaKLf~~~~~~~~~~~WkERGvG~Lkil~~k~~~~~t~~~k~RlvmR~D~gkVlLN~~L~~~m~~~~~k~~v~~  154 (200)
                      .++...=++||+-.++   ...|.-...|.|-+-++..    .++--.||+=.. .++|+...-|+.+|.++......  
T Consensus         5 ~il~~aVvqlY~a~p~---~~~W~~~~~Gvl~~vkD~~----~~sy~lrl~D~~-~~~v~weqElY~~f~y~~~r~fF--   74 (105)
T cd01205           5 KILATAVVQLYKAYPD---PGRWTKTLTGAVCLVKDNV----QKSYFIRLFDIK-ANRIIWEQELYDNFEYQQPRPFF--   74 (105)
T ss_pred             eEEEEEEEEEEEecCC---CCeeEEEeEEEEEEEEECC----CCEEEEEEEEcc-CCcEEEEEEcccCcEEccCCCcE--
Confidence            3566667889965432   2489999999999998642    112234444333 58999999999999998865533  


Q ss_pred             EEEccCCCCCCCCCCCCcceEEEEEcCCHHHHHHHHHHHHHh
Q 028997          155 IFHTSGDDAGGGNNGSAAARTFLIRTKTEEDRNKLATAIQEY  196 (200)
Q Consensus       155 i~~~~~~~~~e~~~~~~~~~~~liR~kt~e~A~eL~~~i~e~  196 (200)
                      ..+..+            -.++-|.|-+.++|.+|++++++.
T Consensus        75 htFe~d------------~c~~GL~Fade~EA~~F~k~v~~~  104 (105)
T cd01205          75 HTFEGD------------DCVVGLNFADETEAAEFRKKVLDK  104 (105)
T ss_pred             EEEecc------------CcEEEEEECCHHHHHHHHHHHHhc
Confidence            222122            158889999999999999999864

WASP-type EVH1 domain. Wiskott-Aldrich syndrome (WAS) is an X-linked recessive disease, characterized by eczema, immunodeficiency, and thrombocytopenia. The majority of patients with WAS, or a milder version of the disorder, X-linked thrombocytopenia (XLT), have point mutations in the EVH1 domain of WASP (Wiskott-Aldrich syndrome protein). WASP is an actin regulatory protein consisting of an N-terminal EVH1 domain, a basic region, a GTP binding domain, a proline rich region and a WH2 acidic region. Yeast members lack the GTP binding domain. WASP binds a 25 residue proline rich motif from the WASP Interacting Protein (WIP) via its N-terminal EVH1 domain.

>KOG2724 consensus Nuclear pore complex component NPAP60L/NUP50 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.09  E-value=0.11  Score=49.08  Aligned_cols=81  Identities=19%  Similarity=0.021  Sum_probs=58.6

Q ss_pred             CCCCCCCCCCCCCCCCC--CCcccccCCCCceeEEEEceeEEEecCCCCCCCCCcccceeeEEeeeecCCCCCCCCCceE
Q 028997           46 SNDLNDADGEDEVPQPS--SPSLKKSEERGIIVVHEVKCKLYVKSSDPADKDTWKDRGTGQLSIKCKEGISKGTKESKPT  123 (200)
Q Consensus        46 ~~~~~d~d~e~e~~eP~--~p~~~~~GEEdE~~vf~~RaKLf~~~~~~~~~~~WkERGvG~Lkil~~k~~~~~t~~~k~R  123 (200)
                      +...++.++-+...++.  .+.....++.+|+...+..|++|++..+.++ ..|...+++.|++++++..++|+++....
T Consensus       331 tg~sd~asgf~~~~q~~~~~~~~ak~e~kgedeeeEd~ppkve~~ev~ed-da~ysKkckvfykKdKEf~dkGvgtl~lk  409 (487)
T KOG2724|consen  331 TGGSDLASGFAGLAQKAMENQNQAKPEGKGEDEEEEDVPPKVETVEVQED-DAVYSKKCKVFYKKDKEFTDKGVGTLHLK  409 (487)
T ss_pred             CCCCCccCCCCcccccccccCCcccccCCCCcccccccCCeeEeecccCc-cchhccccceEEEecccccccccceeecc
Confidence            33455666666666655  3455555666777788899999965443333 58999999999999998777777777777


Q ss_pred             EEEE
Q 028997          124 ILVR  127 (200)
Q Consensus       124 lvmR  127 (200)
                      ++.|
T Consensus       410 p~~~  413 (487)
T KOG2724|consen  410 PNDR  413 (487)
T ss_pred             cccc
Confidence            8888

>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]

Probab=92.02  E-value=0.29  Score=47.14  Aligned_cols=81  Identities=20%  Similarity=0.350  Sum_probs=58.4

Q ss_pred             CCCcccce-eeEEeeeecCCCCCCCCCceEEEEEcc--ccceeeceeeCCCceeeecCCcEEEEEEccCCCCCCCCCCCC
Q 028997           95 DTWKDRGT-GQLSIKCKEGISKGTKESKPTILVRND--VGRVLLNALLYPGIKTNLQKNSIVAIFHTSGDDAGGGNNGSA  171 (200)
Q Consensus        95 ~~WkERGv-G~Lkil~~k~~~~~t~~~k~RlvmR~D--~gkVlLN~~L~~~m~~~~~k~~v~~i~~~~~~~~~e~~~~~~  171 (200)
                      ..|+-+|. |-|-|-++-       ..|+-.|=--|  .+|||-.+.||.+|.|...-.    .|++...  |+      
T Consensus        55 ~~W~~~~~~Gal~lVkD~-------~~rsyFlrl~di~~~rliWdqELY~nf~y~q~r~----ffhtFeg--dd------  115 (569)
T KOG3671|consen   55 NHWNKTGLCGALCLVKDN-------AQRSYFLRLVDIVNNRLIWDQELYQNFEYRQPRT----FFHTFEG--DD------  115 (569)
T ss_pred             hhhccccCceeEEEeecc-------ccceeeeEEeeecCceeeehHHhhhhceeccCcc----ceeeecc--cc------
Confidence            38999999 999888853       34554444445  678999999999999976322    2344332  11      


Q ss_pred             cceEEEEEcCCHHHHHHHHHHHHHh
Q 028997          172 AARTFLIRTKTEEDRNKLATAIQEY  196 (200)
Q Consensus       172 ~~~~~liR~kt~e~A~eL~~~i~e~  196 (200)
                        .+.-|-|-++++|++|++.+++.
T Consensus       116 --c~aGLnF~~E~EA~~F~k~V~~r  138 (569)
T KOG3671|consen  116 --CQAGLNFASEEEAQKFRKKVQDR  138 (569)
T ss_pred             --ceeeecccCHHHHHHHHHHHHHH
Confidence              36667899999999999999865

>PF06058 DCP1: Dcp1-like decapping family; InterPro: IPR010334 An essential step in mRNA turnover is decapping

Probab=90.18  E-value=6.2  Score=30.98  Aligned_cols=92  Identities=14%  Similarity=0.321  Sum_probs=61.0

Q ss_pred             EceeEEEecCCCCCCCCCcccce-eeEEeeeecCCCCCCCCCceEEE-EEcc-ccceeeceeeCCCceeeecCCcEEEEE
Q 028997           80 VKCKLYVKSSDPADKDTWKDRGT-GQLSIKCKEGISKGTKESKPTIL-VRND-VGRVLLNALLYPGIKTNLQKNSIVAIF  156 (200)
Q Consensus        80 ~RaKLf~~~~~~~~~~~WkERGv-G~Lkil~~k~~~~~t~~~k~Rlv-mR~D-~gkVlLN~~L~~~m~~~~~k~~v~~i~  156 (200)
                      .-|-||.+...   ..+|...|+ |+|-|-+...      .-+++|+ |-+. ...+++.  |.+.+.++..++-+  ++
T Consensus        27 ~~v~vY~f~~~---~~~W~K~~iEG~LFv~~r~~------~p~~~~~vlNR~~~~n~~~~--i~~~~~~e~~~~~l--~~   93 (122)
T PF06058_consen   27 SHVVVYKFDHE---TNEWEKTDIEGTLFVYKRSS------SPRYGLIVLNRRSTENFVEP--ITPDLDFELQDPYL--IY   93 (122)
T ss_dssp             EEEEEEEEETT---TTEEEEEEEEEEEEEEEEET------TS-ECEEEEESSSS--EEEE--E-SGGGEEEETTEE--EE
T ss_pred             CeEEEEeecCC---CCcEeecCcEeeEEEEEeec------ccceEEEEecCCCCCceeee--cCCCcEEEEeCCEE--EE
Confidence            34678855432   258999998 8888876542      2245544 4333 6666554  88999999888855  22


Q ss_pred             EccCCCCCCCCCCCCcceEEEEEcCCHHHHHHHHHHHHHh
Q 028997          157 HTSGDDAGGGNNGSAAARTFLIRTKTEEDRNKLATAIQEY  196 (200)
Q Consensus       157 ~~~~~~~~e~~~~~~~~~~~liR~kt~e~A~eL~~~i~e~  196 (200)
                      - .+           ....|-|.|=++++++++.+.|++.
T Consensus        94 r-~~-----------~~~I~GiWf~~~~d~~ri~~~l~~l  121 (122)
T PF06058_consen   94 R-ND-----------NQEIYGIWFYDDEDRQRIYNLLQRL  121 (122)
T ss_dssp             E-ET-----------TTEEEEEEESSHHHHHHHHHHHHHH
T ss_pred             E-cC-----------CceEEEEEEEeHHHHHHHHHHHHhc
Confidence            2 22           2378999999999999999999864

In yeast, two proteins have been identified that are essential for decapping, Dcp1 (this family) and Dcp2 (IPR007722 from INTERPRO). The precise role of these proteins in the decapping reaction has not been established. Evidence suggests that the Dcp1 may enhance the function of Dcp2 [].; PDB: 1Q67_A 2QKM_C 2QKL_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	200
2ec1_A	125	Nucleoporin 50 kDa; ranbp domain, nuclear pore-ass	1e-21
1rrp_B	134	Nuclear pore complex protein NUP358; complex (smal	2e-18
3n7c_A	130	ABR034WP; nuclear pore complex, NUP2, RAN-binding	2e-17
1xke_A	130	RAN-binding protein 2; beta barrel, pleckstrin-hom	3e-16
2crf_A	150	RAN binding protein 3; RAN_BP1 domain, ranbp3, str	3e-15
2y8g_A	138	Ranbp3-B, RAN-binding protein 3; protein transport	3e-15
1k5d_B	201	RAN-specific GTPase-activating protein; ranbp1, ra	2e-13
3m1i_B	191	RAN-specific GTPase-activating protein 1; heat rep	3e-13

>2ec1_A Nucleoporin 50 kDa; ranbp domain, nuclear pore-associated protein 60 kDa-like, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 125

 Score = 84.9 bits (210), Expect = 1e-21
 Identities = 36/126 (28%), Positives = 52/126 (41%), Gaps = 16/126 (12%)

Query: 76  VVHEVKCKLYVKSSDPADKDTWKDRGTGQLSIKCKEGISKGTKESKPTILVRND--VGRV 133
             +  KCKL+ K  +      +K++G G L +K        T   K  +LVR D  +G +
Sbjct: 14  AFYSKKCKLFYKKDNE-----FKEKGIGTLHLK-------PTANQKTQLLVRADTNLGNI 61

Query: 134 LLNALLYPGIKTNLQKNSIVAIFHTSGDDAGGGNNGSAAARTFLIRTKTEEDRNKLATAI 193
           LLN L+ P +       + V I           N       T LIR KT ED ++L   +
Sbjct: 62  LLNVLIPPNMPCTRTGKNNVLIVCVPNPPIDEKNAT--MPVTMLIRVKTSEDADELHKIL 119

Query: 194 QEYAPA 199
            E   A
Sbjct: 120 LEKKDA 125

>1rrp_B Nuclear pore complex protein NUP358; complex (small GTPase/nuclear protein), small GTPase, nuclear transport; HET: GNP; 2.96A {Homo sapiens} SCOP: b.55.1.3 Length = 134

 Score = 76.6 bits (188), Expect = 2e-18
 Identities = 30/139 (21%), Positives = 49/139 (35%), Gaps = 15/139 (10%)

Query: 58  VPQPSSPSLKKSEERGIIVVHEVKCKLYVKSSDPADKDTWKDRGTGQLSIKCKEGISKGT 117
           VP P    +K  EE         + KL+    +      WK+RG G + I       +  
Sbjct: 6   VPLPDKIEVKTGEE-DEEEFFCNRAKLFRFDVE---SKEWKERGIGNVKIL------RHK 55

Query: 118 KESKPTILVRND-VGRVLLNALLYPGIKTNLQKNSIVAIFHTSGDDAGGGNNGSAAARTF 176
              K  +L+R + V ++  N  + P +K      S  +    + D A    +        
Sbjct: 56  TSGKIRLLMRREQVLKICANHYISPDMKLTPNAGSDRSFVWHALDYA----DELPKPEQL 111

Query: 177 LIRTKTEEDRNKLATAIQE 195
            IR KT E+        +E
Sbjct: 112 AIRFKTPEEAALFKCKFEE 130

>3n7c_A ABR034WP; nuclear pore complex, NUP2, RAN-binding domain, nucleoporin, structural genomics, PSI-2, protein structure initiative; 2.26A {Ashbya gossypii} PDB: 3oan_A Length = 130

 Score = 74.2 bits (182), Expect = 2e-17
 Identities = 29/129 (22%), Positives = 49/129 (37%), Gaps = 16/129 (12%)

Query: 68  KSEERGIIVVHEVKCKLYVKSSDPADKDTWKDRGTGQLSIKCKEGISKGTKESKPTILVR 127
            + E    V+   K KL +  SD      +  RG G+L +  K+       + K  +L R
Sbjct: 4   TNGEENEEVLFCEKAKLLIFDSD---TKGYTSRGVGELKLLRKK-----DDKGKVRVLCR 55

Query: 128 ND-VGRVLLNALLYPGIKTNLQKNSIVAIFHTSGDDAGGGNNGSAAARTFLIRTKTEEDR 186
           ++ +G VLLN  +    K          +        G          TF+I+ K + D 
Sbjct: 56  SEGMGHVLLNTSVVKSFKYQPIDADNENLIKWPIITDGK-------LETFIIKVKQKADG 108

Query: 187 NKLATAIQE 195
            +L  A+ +
Sbjct: 109 RRLVGAVAD 117

>1xke_A RAN-binding protein 2; beta barrel, pleckstrin-homology (PH) domain, phosphotyrosine-binding (PTB) domain, protein transport; NMR {Homo sapiens} SCOP: b.55.1.3 Length = 130

 Score = 70.8 bits (173), Expect = 3e-16
 Identities = 26/122 (21%), Positives = 45/122 (36%), Gaps = 14/122 (11%)

Query: 76  VVHEVKCKLYVKSSDPADKDTWKDRGTGQLSIKCKEGISKGTKESKPTILVRND-VGRVL 134
           V++  + KL+   ++      WK+RG G L I       K     K  +L+R + V +V 
Sbjct: 9   VLYSQRVKLFRFDAE---VSQWKERGLGNLKIL------KNEVNGKLRMLMRREQVLKVC 59

Query: 135 LNALLYPGIKTNLQKNSIVAIFHTSGDDAGGGNNGSAAARTFLIRTKTEEDRNKLATAIQ 194
            N  +   +       S  A    + D +    +G A       + KT E   +     +
Sbjct: 60  ANHWITTTMNLKPLSGSDRAWMWLASDFS----DGDAKLEQLAAKFKTPELAEEFKQKFE 115

Query: 195 EY 196
           E 
Sbjct: 116 EC 117

>2crf_A RAN binding protein 3; RAN_BP1 domain, ranbp3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.3 Length = 150

 Score = 68.9 bits (168), Expect = 3e-15
 Identities = 32/152 (21%), Positives = 60/152 (39%), Gaps = 16/152 (10%)

Query: 50  NDADGEDEVPQPSSPSLKKSEERGIIVVHEVKCKLYVKSSDPADKDTWKDRGTGQLSIKC 109
           + + G           +   EE     V +++CKL+V         +W +RG G L +  
Sbjct: 3   SGSSGTARKCLLEKVEVITGEE-AESNVLQMQCKLFVFDKT---SQSWVERGRGLLRLND 58

Query: 110 KEGISKGTKESKPTILVRND-VGRVLLNALLYPGIKTNLQKNSIVAIFHTSGDDAGGGNN 168
                 GT   +  +++R     R++LN  L+  ++  + K S  +I  T+ D    G  
Sbjct: 59  MASTDDGTL--QSRLVMRTQGSLRLILNTKLWAQMQ--IDKASEKSIHITAMDTEDQG-- 112

Query: 169 GSAAARTFLIRTKTEEDRNKLATAIQEYAPAS 200
                + FLI   +++   +L  A+     A 
Sbjct: 113 ----VKVFLISASSKDT-GQLYAALHHRILAL 139

>2y8g_A Ranbp3-B, RAN-binding protein 3; protein transport, CRM1-mediated nuclear export; 1.61A {Homo sapiens} PDB: 2y8f_A Length = 138

 Score = 68.5 bits (167), Expect = 3e-15
 Identities = 30/133 (22%), Positives = 56/133 (42%), Gaps = 15/133 (11%)

Query: 68  KSEERGIIVVHEVKCKLYVKSSDPADKDTWKDRGTGQLSIKCKEGISKGTKESKPTILVR 127
            + E     V +++CKL+V         +W   G G L +        GT +S+  +++R
Sbjct: 8   ITGEEAESNVLQMQCKLFVFDKT---SQSWVAVGRGLLRLNDMASTDDGTLQSR--LVMR 62

Query: 128 ND-VGRVLLNALLYPGIKTNLQKNSIVAIFHTSGDDAGGGNNGSAAARTFLIRTKTEEDR 186
                R++LN  L+  ++  + K S  +I  T+ D    G       + FLI   +++  
Sbjct: 63  TQGSLRLILNTKLWAQMQ--IDKASEKSIRITAMDTEDQG------VKVFLISASSKDT- 113

Query: 187 NKLATAIQEYAPA 199
            +L  A+     A
Sbjct: 114 GQLYAALHHRILA 126

>1k5d_B RAN-specific GTPase-activating protein; ranbp1, rangap, GAP, signal transduction, nuclear transport, GTP hydrolysis, ground state; HET: GNP; 2.70A {Homo sapiens} SCOP: b.55.1.3 PDB: 1k5g_B* Length = 201

 Score = 65.2 bits (158), Expect = 2e-13
 Identities = 29/159 (18%), Positives = 58/159 (36%), Gaps = 17/159 (10%)

Query: 44  QNSNDLNDADGEDEVPQPSSPSLK------KSEERGIIVVHEVKCKLYVKSSDPADKDTW 97
           ++ +   +   E        P +       K+ E     + +++ KL+  +S+  D   W
Sbjct: 9   EDHDTSTENTDESNHDPQFEPIVSLPEQEIKTLEEDEEELFKMRAKLFRFASE-NDLPEW 67

Query: 98  KDRGTGQLSIKCKEGISKGTKESKPTILVRND-VGRVLLNALLYPGIKTNLQKNSIVAIF 156
           K+RGTG + +       K  ++    +L+R D   ++  N  + P ++      S  A  
Sbjct: 68  KERGTGDVKLL------KHKEKGAIRLLMRRDKTLKICANHYITPMMELKPNAGSDRAWV 121

Query: 157 HTSGDDAGGGNNGSAAARTFLIRTKTEEDRNKLATAIQE 195
             +  D     +         IR    E+  K  T  +E
Sbjct: 122 WNTHADF---ADECPKPELLAIRFLNAENAQKFKTKFEE 157

>3m1i_B RAN-specific GTPase-activating protein 1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} Length = 191

 Score = 64.4 bits (156), Expect = 3e-13
 Identities = 35/154 (22%), Positives = 62/154 (40%), Gaps = 14/154 (9%)

Query: 44  QNSNDLNDADGEDEVPQPSSPSLK-KSEERGIIVVHEVKCKLYVKSSDPADKDTWKDRGT 102
           +  +D  ++      P      +  K+ E    V+++V+ KL+   +D      WK+RGT
Sbjct: 42  KEGDDAPESPDIHFEPVVHLEKVDVKTMEEDEEVLYKVRAKLFRFDAD---AKEWKERGT 98

Query: 103 GQLSIKCKEGISKGTKESKPTILVRND-VGRVLLNALLYPGIKTNLQKNSIVAIFHTSGD 161
           G           K  K +K  IL+R D   ++  N ++ P         S  +  +    
Sbjct: 99  GDCKFL------KNKKTNKVRILMRRDKTLKICANHIIAPEYTLKPNVGSDRSWVYACTA 152

Query: 162 DAGGGNNGSAAARTFLIRTKTEEDRNKLATAIQE 195
           D   G    A A TF IR  ++E+ +K     ++
Sbjct: 153 DIAEGE---AEAFTFAIRFGSKENADKFKEEFEK 183

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	200
2ec1_A	125	Nucleoporin 50 kDa; ranbp domain, nuclear pore-ass	100.0
1xke_A	130	RAN-binding protein 2; beta barrel, pleckstrin-hom	100.0
1rrp_B	134	Nuclear pore complex protein NUP358; complex (smal	100.0
1k5d_B	201	RAN-specific GTPase-activating protein; ranbp1, ra	100.0
4hat_B	140	RAN-specific GTPase-activating protein 1; heat rep	100.0
3m1i_B	191	RAN-specific GTPase-activating protein 1; heat rep	100.0
3n7c_A	130	ABR034WP; nuclear pore complex, NUP2, RAN-binding	100.0
2y8g_A	138	Ranbp3-B, RAN-binding protein 3; protein transport	99.97
2crf_A	150	RAN binding protein 3; RAN_BP1 domain, ranbp3, str	99.97
1qc6_A	130	EVH1 domain from ENA/VAsp-like protein; AN incompl	99.48
1ddw_A	120	GLGF-domain protein homer; pleckstrin homology dom	99.02
1i2h_A	168	PSD-ZIP45(homer-1C/VESL-1L); enabled VAsp homology	99.01
1evh_A	112	WH1 domain, protein (MENA EVH1 domain); molecular	98.64
1egx_A	115	VAsp, vasodilator-stimulated phosphoprotein; EVH1,	98.6
1xod_A	118	Spred1; sprouty, EVH1, peptide-binding, signaling	98.48
2jp2_A	126	Spred-2, sprouty-related, EVH1 domain-containing p	98.47
3syx_A	130	Sprouty-related, EVH1 domain-containing protein 1;	97.62
1mke_A	152	WIP - N-WAsp, fusion protein consisting of wiskott	96.98
2ifs_A	169	N-WAsp, wiskott-aldrich syndrome protien ineractin	96.97
2lyd_A	134	Decapping protein 1; DCP1, XRN1, transcription-pro	89.13
2qkl_A	127	DCP1 protein, SPBC3B9.21 protein; protein-protein	80.76

>2ec1_A Nucleoporin 50 kDa; ranbp domain, nuclear pore-associated protein 60 kDa-like, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=100.00  E-value=6.2e-37  Score=240.25  Aligned_cols=116  Identities=31%  Similarity=0.462  Sum_probs=97.6

Q ss_pred             ccCCCCceeEEEEceeEEEecCCCCCCCCCcccceeeEEeeeecCCCCCCCCCceEEEEEcc-c-cceeeceeeCCCcee
Q 028997           68 KSEERGIIVVHEVKCKLYVKSSDPADKDTWKDRGTGQLSIKCKEGISKGTKESKPTILVRND-V-GRVLLNALLYPGIKT  145 (200)
Q Consensus        68 ~~GEEdE~~vf~~RaKLf~~~~~~~~~~~WkERGvG~Lkil~~k~~~~~t~~~k~RlvmR~D-~-gkVlLN~~L~~~m~~  145 (200)
                      .+|||+|++||++|||||++.+     ++|+|||+|+||||+++       ++++|||||+| + |||||||.|+++|++
T Consensus         6 ~tgEE~E~~lf~~raKLf~~~~-----~~WkERGvG~lki~~~k-------~~k~RllmR~d~~~~kv~lN~~i~~~m~~   73 (125)
T 2ec1_A            6 SGEVKEEDAFYSKKCKLFYKKD-----NEFKEKGIGTLHLKPTA-------NQKTQLLVRADTNLGNILLNVLIPPNMPC   73 (125)
T ss_dssp             --CCCCCSCSEEEEEEEEEECS-----SSEEEEEEEEEEEEECS-------SSSEEEEEEESSSSCCBSCCEECCSSCCE
T ss_pred             cCCccCceeEEEEeeEEEEecC-----CCcccccEEEEEeeecC-------CCcEEEEEEecCCCCEEEEeeEEcCCCeE
Confidence            4799999999999999998765     48999999999999875       56999999999 5 899999999999999


Q ss_pred             ee-cCCcEEEEEEccCCCCCCCCCCCCcceEEEEEcCCHHHHHHHHHHHHHhCC
Q 028997          146 NL-QKNSIVAIFHTSGDDAGGGNNGSAAARTFLIRTKTEEDRNKLATAIQEYAP  198 (200)
Q Consensus       146 ~~-~k~~v~~i~~~~~~~~~e~~~~~~~~~~~liR~kt~e~A~eL~~~i~e~~p  198 (200)
                      +. +++++ ++|+++.++.|++.+  +++++|+||||++++|++|+++|+++.+
T Consensus        74 ~~~g~~~~-~~~~~~~~~~d~~~~--~~~~~~~lrfk~~e~a~~f~~~~~e~k~  124 (125)
T 2ec1_A           74 TRTGKNNV-LIVCVPNPPIDEKNA--TMPVTMLIRVKTSEDADELHKILLEKKD  124 (125)
T ss_dssp             ECCTTTEE-EEEECCSSCSCSSSS--SSCEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             EecCCCcE-EEEEccCCcccCCCC--CceEEEEEEECCHHHHHHHHHHHHHhhc
Confidence            98 67777 566766643343211  2689999999999999999999999864

>1xke_A RAN-binding protein 2; beta barrel, pleckstrin-homology (PH) domain, phosphotyrosine-binding (PTB) domain, protein transport; NMR {Homo sapiens} SCOP: b.55.1.3

Probab=100.00  E-value=1.8e-35  Score=233.01  Aligned_cols=115  Identities=23%  Similarity=0.288  Sum_probs=95.1

Q ss_pred             cCCCCceeEEEEceeEEEecCCCCCCCCCcccceeeEEeeeecCCCCCCCCCceEEEEEcc-ccceeeceeeCCCceeee
Q 028997           69 SEERGIIVVHEVKCKLYVKSSDPADKDTWKDRGTGQLSIKCKEGISKGTKESKPTILVRND-VGRVLLNALLYPGIKTNL  147 (200)
Q Consensus        69 ~GEEdE~~vf~~RaKLf~~~~~~~~~~~WkERGvG~Lkil~~k~~~~~t~~~k~RlvmR~D-~gkVlLN~~L~~~m~~~~  147 (200)
                      +|||||++||++|||||++.++   .++|+|||+|+||||+++.      ++++|||||+| +||||||+.|+++|+++.
T Consensus         2 tGEE~E~~l~~~raKL~~~~~~---~~~WkERG~G~lkil~~k~------~~k~RlvmR~d~~~kv~lN~~i~~~m~~~~   72 (130)
T 1xke_A            2 SGEEDEKVLYSQRVKLFRFDAE---VSQWKERGLGNLKILKNEV------NGKLRMLMRREQVLKVCANHWITTTMNLKP   72 (130)
T ss_dssp             CSSSCEEEEEEEEEEEEEEETT---TTEEEEEEEEEEEEEEETT------SSCEEEEEEETTTTEEEEEEECCTTSCEEE
T ss_pred             CCCcceEEEEEEEEEEEEEcCC---CCCcccCcEEEEEEEEcCC------CCeEEEEEEEcCCCeEEEecEeCCCcEEee
Confidence            7999999999999999966432   2589999999999999974      67999999999 999999999999999987


Q ss_pred             -cCCcEEEEEEccCCCCCCCCCCCCcceEEEEEcCCHHHHHHHHHHHHHhC
Q 028997          148 -QKNSIVAIFHTSGDDAGGGNNGSAAARTFLIRTKTEEDRNKLATAIQEYA  197 (200)
Q Consensus       148 -~k~~v~~i~~~~~~~~~e~~~~~~~~~~~liR~kt~e~A~eL~~~i~e~~  197 (200)
                       .++...++|.+.+..+++     .++++|+|||+++++|++|+++|+++.
T Consensus        73 ~~~s~~~~~~~~~d~~d~~-----~~~~~~~irfks~e~a~~f~~~~ee~k  118 (130)
T 1xke_A           73 LSGSDRAWMWLASDFSDGD-----AKLEQLAAKFKTPELAEEFKQKFEECQ  118 (130)
T ss_dssp             CTTCSSCEEEEEEECSSSC-----SEEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             cCCCCeEEEEEecccCCCC-----CceEEEEEEECCHHHHHHHHHHHHHHH
Confidence             333333455544432222     278999999999999999999998863

>1rrp_B Nuclear pore complex protein NUP358; complex (small GTPase/nuclear protein), small GTPase, nuclear transport; HET: GNP; 2.96A {Homo sapiens} SCOP: b.55.1.3

Probab=100.00  E-value=1.2e-34  Score=229.16  Aligned_cols=117  Identities=21%  Similarity=0.277  Sum_probs=97.5

Q ss_pred             cccCCCCceeEEEEceeEEEecCCCCCCCCCcccceeeEEeeeecCCCCCCCCCceEEEEEcc-ccceeeceeeCCCcee
Q 028997           67 KKSEERGIIVVHEVKCKLYVKSSDPADKDTWKDRGTGQLSIKCKEGISKGTKESKPTILVRND-VGRVLLNALLYPGIKT  145 (200)
Q Consensus        67 ~~~GEEdE~~vf~~RaKLf~~~~~~~~~~~WkERGvG~Lkil~~k~~~~~t~~~k~RlvmR~D-~gkVlLN~~L~~~m~~  145 (200)
                      ..+|||||++||++|||||++...   .++|+|||+|+||||+++.      ++++|||||+| +||||||+.|+++|++
T Consensus        14 v~tGEE~E~~lf~~raKL~~~~~~---~~~WkerG~G~lkil~~k~------~~k~RlvmR~d~~~kv~lN~~i~~~m~~   84 (134)
T 1rrp_B           14 VKTGEEDEEEFFCNRAKLFRFDVE---SKEWKERGIGNVKILRHKT------SGKIRLLMRREQVLKICANHYISPDMKL   84 (134)
T ss_dssp             CCCSCCSEEEEEEEEEEEEEECSS---SSCEEEEEEEEEEEEEESS------SCCCEEEEECTTTCCEEECCBCCSSCCC
T ss_pred             ecCCCcCeEEEEEEEEEEEEEccc---CCCcccCcEEEEEEEEECC------CCeEEEEEEEcCCCcEEEEeEecCCceE
Confidence            458999999999999999966432   2589999999999999973      67999999999 9999999999999999


Q ss_pred             ee-cCCcEEEEEEccCCCCCCCCCCCCcceEEEEEcCCHHHHHHHHHHHHHhC
Q 028997          146 NL-QKNSIVAIFHTSGDDAGGGNNGSAAARTFLIRTKTEEDRNKLATAIQEYA  197 (200)
Q Consensus       146 ~~-~k~~v~~i~~~~~~~~~e~~~~~~~~~~~liR~kt~e~A~eL~~~i~e~~  197 (200)
                      +. .++...++|.+.+..++++     ++++|+|||+++++|++|+++|+++.
T Consensus        85 ~~~~~s~~~~~~~~~d~~d~~~-----k~~~~~irfk~~e~A~~f~~~~~e~~  132 (134)
T 1rrp_B           85 TPNAGSDRSFVWHALDYADELP-----KPEQLAIRFKTPEEAALFKCKFEEAQ  132 (134)
T ss_dssp             BCSTTCTTEEEEEEEECTTSSC-----EEEEEEEECSSHHHHHHHHHHHHHTT
T ss_pred             eecCCCCeEEEEEcccccCCCC-----ceEEEEEEECCHHHHHHHHHHHHHHh
Confidence            97 3333345666555433332     78999999999999999999999875

>1k5d_B RAN-specific GTPase-activating protein; ranbp1, rangap, GAP, signal transduction, nuclear transport, GTP hydrolysis, ground state; HET: GNP; 2.70A {Homo sapiens} SCOP: b.55.1.3 PDB: 1k5g_B*

Probab=100.00  E-value=3.2e-34  Score=241.07  Aligned_cols=118  Identities=20%  Similarity=0.301  Sum_probs=96.4

Q ss_pred             cccCCCCceeEEEEceeEEEecCCCCCCCCCcccceeeEEeeeecCCCCCCCCCceEEEEEcc-ccceeeceeeCCCcee
Q 028997           67 KKSEERGIIVVHEVKCKLYVKSSDPADKDTWKDRGTGQLSIKCKEGISKGTKESKPTILVRND-VGRVLLNALLYPGIKT  145 (200)
Q Consensus        67 ~~~GEEdE~~vf~~RaKLf~~~~~~~~~~~WkERGvG~Lkil~~k~~~~~t~~~k~RlvmR~D-~gkVlLN~~L~~~m~~  145 (200)
                      ..+|||||++||++|||||++..+. ..++|+|||+|+||||+|+.      ++++|||||+| +|||||||+|+++|++
T Consensus        38 v~TGEEdEe~lf~~RaKLf~f~~d~-~~~~WKERGvG~lkIlk~k~------t~k~RlvMR~d~~~kV~LN~~I~~~m~~  110 (201)
T 1k5d_B           38 IKTLEEDEEELFKMRAKLFRFASEN-DLPEWKERGTGDVKLLKHKE------KGAIRLLMRRDKTLKICANHYITPMMEL  110 (201)
T ss_dssp             CCCSCSSCCCSEEEEEEEEEECCTT-SSCCEEEEEEEEEEEEECSS------SCCEEEEEEETTTCCEEEEEECCSSCCC
T ss_pred             ccCCCccceEEEEEeeeEEEecccc-cCCCccccceEEEEEEEcCC------CCcEEEEEEECCcceEEEeeEecCCcee
Confidence            3589999999999999999763211 12589999999999999973      67999999999 9999999999999999


Q ss_pred             ee-cCCcEEEEEEc-cCCCCCCCCCCCCcceEEEEEcCCHHHHHHHHHHHHHh
Q 028997          146 NL-QKNSIVAIFHT-SGDDAGGGNNGSAAARTFLIRTKTEEDRNKLATAIQEY  196 (200)
Q Consensus       146 ~~-~k~~v~~i~~~-~~~~~~e~~~~~~~~~~~liR~kt~e~A~eL~~~i~e~  196 (200)
                      +. .++...|+|++ .++.+++     +++++|+|||+++++|++|+++|+++
T Consensus       111 ~~~~~s~ks~v~~~~~d~ad~~-----~k~e~~~iRfks~e~A~~f~~~~ee~  158 (201)
T 1k5d_B          111 KPNAGSDRAWVWNTHADFADEC-----PKPELLAIRFLNAENAQKFKTKFEEC  158 (201)
T ss_dssp             CBCSSCSSEEEEEEEEECTTSS-----CEEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred             eecCCCCceEEEEeccccCCCC-----CceEEEEEEECCHHHHHHHHHHHHHH
Confidence            87 33334466655 3332222     27899999999999999999999875

>4hat_B RAN-specific GTPase-activating protein 1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_B* 4hav_B* 4haw_B* 4hax_B* 4hay_B* 4haz_B* 4hb0_B* 4hb2_B* 4hb3_B* 4hb4_B* 4gmx_B* 4gpt_B*

Probab=100.00  E-value=2.3e-34  Score=229.86  Aligned_cols=115  Identities=25%  Similarity=0.366  Sum_probs=92.3

Q ss_pred             ccCCCCceeEEEEceeEEEecCCCCCCCCCcccceeeEEeeeecCCCCCCCCCceEEEEEcc-ccceeeceeeCCCceee
Q 028997           68 KSEERGIIVVHEVKCKLYVKSSDPADKDTWKDRGTGQLSIKCKEGISKGTKESKPTILVRND-VGRVLLNALLYPGIKTN  146 (200)
Q Consensus        68 ~~GEEdE~~vf~~RaKLf~~~~~~~~~~~WkERGvG~Lkil~~k~~~~~t~~~k~RlvmR~D-~gkVlLN~~L~~~m~~~  146 (200)
                      .+|||||++||++|||||++..+   .++|+|||+|+||||++++      ++++|||||+| +|||||||.|+++|+++
T Consensus        16 ~tGEE~E~~lf~~raKLf~f~~~---~~~WkerG~G~lkilk~k~------~~k~RllmR~d~~~kv~lN~~i~~~m~~~   86 (140)
T 4hat_B           16 KTMEEDEEVLYKVRAKLFRFDKD---AKEWKERGTGDCKFLKNKK------TNKVRILMRRDKTLKICANHIIAPEYTLK   86 (140)
T ss_dssp             ---CTTEEEEEEEEEEEEEEETT---TTEEEEEEEEEEEEEEETT------TCCEEEEEECTTTCCEEEEEECCTTCCCB
T ss_pred             cCCCcCeeEEEEEeEEEEEEcCC---CCCcccccEEEEEEEEcCC------CCeEEEEEEecCcceEEEEeEecCCeEEe
Confidence            57999999999999999966432   1589999999999999974      67999999999 99999999999999999


Q ss_pred             e-cCCcEEEEEEc-cCCCCCCCCCCCCcceEEEEEcCCHHHHHHHHHHHHHh
Q 028997          147 L-QKNSIVAIFHT-SGDDAGGGNNGSAAARTFLIRTKTEEDRNKLATAIQEY  196 (200)
Q Consensus       147 ~-~k~~v~~i~~~-~~~~~~e~~~~~~~~~~~liR~kt~e~A~eL~~~i~e~  196 (200)
                      + .++...|+|++ .|.+++     .+++++|+|||+++++|++|+++|++.
T Consensus        87 ~~~~s~k~~v~~~~~D~sdg-----~~~~~~~~iRfk~~e~A~~f~~~~ee~  133 (140)
T 4hat_B           87 PNVGSDRSWVYACTADIAEG-----EAEAFTFAIRFGSKENADKFKEEFEKA  133 (140)
T ss_dssp             CCTTCSSEEEEEEEEECTTS-----SCEEEEEEEEESSHHHHHHHHHHHHHH
T ss_pred             EcCCCCceEEEEccccCCCC-----CCceEEEEEEECCHHHHHHHHHHHHHH
Confidence            7 33222355543 333222     237899999999999999999999875

>3m1i_B RAN-specific GTPase-activating protein 1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.7e-34  Score=238.24  Aligned_cols=115  Identities=25%  Similarity=0.373  Sum_probs=94.4

Q ss_pred             ccCCCCceeEEEEceeEEEecCCCCCCCCCcccceeeEEeeeecCCCCCCCCCceEEEEEcc-ccceeeceeeCCCceee
Q 028997           68 KSEERGIIVVHEVKCKLYVKSSDPADKDTWKDRGTGQLSIKCKEGISKGTKESKPTILVRND-VGRVLLNALLYPGIKTN  146 (200)
Q Consensus        68 ~~GEEdE~~vf~~RaKLf~~~~~~~~~~~WkERGvG~Lkil~~k~~~~~t~~~k~RlvmR~D-~gkVlLN~~L~~~m~~~  146 (200)
                      .+|||||++||++|||||++..+   .++|+|||+|+||||+|+.      ++++|||||+| +|||||||.|+++|+++
T Consensus        67 ~tGEEdEe~lf~~RaKLf~f~~~---~~~WKERGvG~lkilk~ke------t~k~RllMR~d~~~kV~LN~~I~~~m~~~  137 (191)
T 3m1i_B           67 KTMEEDEEVLYKVRAKLFRFDAD---AKEWKERGTGDCKFLKNKK------TNKVRILMRRDKTLKICANHIIAPEYTLK  137 (191)
T ss_dssp             CCSCTTEEEEEEEEEEEEEEETT---TTEEEEEEEEEEEEEEETT------TCCEEEEEECTTTCCEEEEEECCTTCCCB
T ss_pred             cCCCcceeeeeEEeeEEEEEecC---CCCccceeEEEEEEEEcCC------CCeEEEEEEecCcceEEEeeecCCCcEEe
Confidence            57999999999999999966432   2589999999999999974      67999999999 99999999999999999


Q ss_pred             ec-CCcEEEEEEc-cCCCCCCCCCCCCcceEEEEEcCCHHHHHHHHHHHHHh
Q 028997          147 LQ-KNSIVAIFHT-SGDDAGGGNNGSAAARTFLIRTKTEEDRNKLATAIQEY  196 (200)
Q Consensus       147 ~~-k~~v~~i~~~-~~~~~~e~~~~~~~~~~~liR~kt~e~A~eL~~~i~e~  196 (200)
                      +. ++...|+|++ .+.+ + |   .+++++|+|||+++++|++|+++|++.
T Consensus       138 ~~~~sdks~v~~~~~D~s-d-g---e~k~e~~aIRFk~~E~A~eF~~~~eea  184 (191)
T 3m1i_B          138 PNVGSDRSWVYACTADIA-E-G---EAEAFTFAIRFGSKENADKFKEEFEKA  184 (191)
T ss_dssp             CCTTCSSEEEEEEEEECT-T-S---SCEEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred             ECCCCCceEEEEecCcCC-C-C---CcceEEEEEEECCHHHHHHHHHHHHHH
Confidence            73 2222345553 3332 1 2   237899999999999999999999875

>3n7c_A ABR034WP; nuclear pore complex, NUP2, RAN-binding domain, nucleoporin, structural genomics, PSI-2, protein structure initiative; 2.26A {Ashbya gossypii} PDB: 3oan_A

Probab=100.00  E-value=1.5e-33  Score=222.44  Aligned_cols=115  Identities=26%  Similarity=0.352  Sum_probs=84.6

Q ss_pred             cccCCCCceeEEEEceeEEEecCCCCCCCCCcccceeeEEeeeecCCCCCCCCCceEEEEEcc-ccceeeceeeCCCcee
Q 028997           67 KKSEERGIIVVHEVKCKLYVKSSDPADKDTWKDRGTGQLSIKCKEGISKGTKESKPTILVRND-VGRVLLNALLYPGIKT  145 (200)
Q Consensus        67 ~~~GEEdE~~vf~~RaKLf~~~~~~~~~~~WkERGvG~Lkil~~k~~~~~t~~~k~RlvmR~D-~gkVlLN~~L~~~m~~  145 (200)
                      ..+|||||++||++|||||++..+   .++|+|||+|+||||+++.     .++++|||||+| +||||||+.|+++|++
T Consensus         3 v~tGEE~E~~lf~~raKL~~f~~~---~~~WkerG~G~lkil~~k~-----~~~k~RllmR~d~~~kv~lN~~i~~~m~~   74 (130)
T 3n7c_A            3 LTNGEENEEVLFCEKAKLLIFDSD---TKGYTSRGVGELKLLRKKD-----DKGKVRVLCRSEGMGHVLLNTSVVKSFKY   74 (130)
T ss_dssp             -------CEEEEEEEEEEEEECC------CEEEEEEEEEEEEEETT-----EEEEEEEEEEC-CCCCEEEEEECCTTBCC
T ss_pred             ccCCCcCeeEEEEEEEEEEEEeCC---CCCchhcceEEEEEEEecC-----CCCEEEEEEEecCCceEEeeccccCCcEE
Confidence            468999999999999999966432   2589999999999999872     257999999999 9999999999999999


Q ss_pred             eec-CCcEEEEEEccCCCCCCCCCCCCcceEEEEEcCCHHHHHHHHHHHHHhC
Q 028997          146 NLQ-KNSIVAIFHTSGDDAGGGNNGSAAARTFLIRTKTEEDRNKLATAIQEYA  197 (200)
Q Consensus       146 ~~~-k~~v~~i~~~~~~~~~e~~~~~~~~~~~liR~kt~e~A~eL~~~i~e~~  197 (200)
                      +.. +++..+++... .  +++     ++++|+|||+++++|++|+++|+++.
T Consensus        75 ~~~~~~~~~~v~~~~-~--~dg-----k~~~~~lrfks~e~A~~f~~~iee~~  119 (130)
T 3n7c_A           75 QPIDADNENLIKWPI-I--TDG-----KLETFIIKVKQKADGRRLVGAVADAQ  119 (130)
T ss_dssp             EESCTTCTTEEEEEE-E--ETT-----EEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             eEcCCCCccEEEEEe-c--CCC-----ceEEEEEEECCHHHHHHHHHHHHHHH
Confidence            973 22111232221 1  112     68999999999999999999999864

>2y8g_A Ranbp3-B, RAN-binding protein 3; protein transport, CRM1-mediated nuclear export; 1.61A {Homo sapiens} PDB: 2y8f_A

Probab=99.97  E-value=7.8e-32  Score=214.46  Aligned_cols=115  Identities=18%  Similarity=0.328  Sum_probs=84.4

Q ss_pred             cccCCCCceeEEEEceeEEEecCCCCCCCCCcccceeeEEeeeecCCCCCCCCCceEEEEEcc-ccceeeceeeCCCcee
Q 028997           67 KKSEERGIIVVHEVKCKLYVKSSDPADKDTWKDRGTGQLSIKCKEGISKGTKESKPTILVRND-VGRVLLNALLYPGIKT  145 (200)
Q Consensus        67 ~~~GEEdE~~vf~~RaKLf~~~~~~~~~~~WkERGvG~Lkil~~k~~~~~t~~~k~RlvmR~D-~gkVlLN~~L~~~m~~  145 (200)
                      ..+|||+|++||++|||||.+...   .++|+|||+|+||||+++..+  +.++++|||||+| ++||||||.|+++|++
T Consensus         7 v~tGEE~E~~~~~~raKL~~f~~~---~~~WkERG~G~lkil~~k~~~--~~t~k~RlvmR~d~~~kv~lN~~i~~~m~~   81 (138)
T 2y8g_A            7 VITGEEAESNVLQMQCKLFVFDKT---SQSWVAVGRGLLRLNDMASTD--DGTLQSRLVMRTQGSLRLILNTKLWAQMQI   81 (138)
T ss_dssp             -------CEEEEEEEEEEEEEETT---TTEEEEEEEEEEEEEEEECTT--TCCEEEEEEEEETTTCCEEEEEECCTTCCE
T ss_pred             ccCCCcCcEEEEEEEeEEEEEecC---CCCchhceEEEEEEEEeccCC--CCCccEEEEEEEcCcceEEEeeEecCCcee
Confidence            458999999999999999965432   258999999999999997311  2247999999999 9999999999999999


Q ss_pred             ee-cCCcEEEEEEccCCCCCCCCCCCCcceEEEEEcCCHHHHHHHHHHHHH
Q 028997          146 NL-QKNSIVAIFHTSGDDAGGGNNGSAAARTFLIRTKTEEDRNKLATAIQE  195 (200)
Q Consensus       146 ~~-~k~~v~~i~~~~~~~~~e~~~~~~~~~~~liR~kt~e~A~eL~~~i~e  195 (200)
                      +. +++++  +|.+.++ .+ +     .+.+|+|||+++++|+.|...+++
T Consensus        82 ~~~~~k~~--~~~~~d~-~d-~-----~~~~~lirfk~~e~a~lf~~~~~~  123 (138)
T 2y8g_A           82 DKASEKSI--RITAMDT-ED-Q-----GVKVFLISASSKDTGQLYAALHHR  123 (138)
T ss_dssp             EEEETTEE--EEECCC---C-C-----CCCEEEEECCHHHHHHHHHHHHHH
T ss_pred             ecCCCCEE--EEEEecC-CC-C-----ceEEEEEEECCHHHHHHHHHHHHH
Confidence            98 45655  4444453 12 1     467999999999999776655544

>2crf_A RAN binding protein 3; RAN_BP1 domain, ranbp3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.3

Probab=99.97  E-value=1.9e-31  Score=214.91  Aligned_cols=114  Identities=19%  Similarity=0.367  Sum_probs=89.6

Q ss_pred             ccCCCCceeEEEEceeEEEecCCCCCCCCCcccceeeEEeeeecCCCCCCCCCceEEEEEcc-ccceeeceeeCCCceee
Q 028997           68 KSEERGIIVVHEVKCKLYVKSSDPADKDTWKDRGTGQLSIKCKEGISKGTKESKPTILVRND-VGRVLLNALLYPGIKTN  146 (200)
Q Consensus        68 ~~GEEdE~~vf~~RaKLf~~~~~~~~~~~WkERGvG~Lkil~~k~~~~~t~~~k~RlvmR~D-~gkVlLN~~L~~~m~~~  146 (200)
                      .+|||+|++||++|||||++...   .++|+|||+|+||||+++..+  +.++++|||||+| ++|||||+.|+++|+++
T Consensus        20 ~tGEE~E~~l~~~raKL~~fd~~---~~~WkERG~G~lkil~~k~~~--~~t~k~RlvmR~d~~~kv~lN~~i~~~m~~~   94 (150)
T 2crf_A           20 ITGEEAESNVLQMQCKLFVFDKT---SQSWVERGRGLLRLNDMASTD--DGTLQSRLVMRTQGSLRLILNTKLWAQMQID   94 (150)
T ss_dssp             SCCCCCCEEEEEEEEEEEEEETT---TTEEEEEEEEEEEEEEEECSS--SCSEEEEEEEEESSSCCEEEEEECCTTCCEE
T ss_pred             cCCCcCeEEEEEEEeEEEEEcCC---CCCcccceeEEEEEEeccccC--CCCccEEEEEEEcCcceEEeeeeccCCceee
Confidence            57999999999999999966432   258999999999999987311  2246999999999 99999999999999999


Q ss_pred             e-cCCcEEEEEEccCCCCCCCCCCCCcceEEEEEcCCHHHHHHHHHHHHH
Q 028997          147 L-QKNSIVAIFHTSGDDAGGGNNGSAAARTFLIRTKTEEDRNKLATAIQE  195 (200)
Q Consensus       147 ~-~k~~v~~i~~~~~~~~~e~~~~~~~~~~~liR~kt~e~A~eL~~~i~e  195 (200)
                      . .++.++|.  +.++. + +     .+.+|+|||+++++|+.|...+++
T Consensus        95 ~~~~k~~~~~--~~d~~-d-~-----~~~~~lirfk~~e~a~lf~~~~e~  135 (150)
T 2crf_A           95 KASEKSIHIT--AMDTE-D-Q-----GVKVFLISASSKDTGQLYAALHHR  135 (150)
T ss_dssp             CCSSSEEEEE--EEBSS-S-C-----CEEEEEEECCHHHHHHHHHHHHHH
T ss_pred             cCCCCEEEEE--eecCC-C-C-----ceEEEEEEECCHHHHHHHHHHHHH
Confidence            7 45555443  33431 2 1     468999999999999766654443

>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven stranded anti-parallel beta barrel closed by AN alpha helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4

Probab=99.48  E-value=4.2e-13  Score=105.18  Aligned_cols=102  Identities=12%  Similarity=0.184  Sum_probs=80.7

Q ss_pred             CceeEEEEceeEEEecCCCCCCCCCccccee-----eEEeeeecCCCCCCCCCceEEEEEcc-ccceeeceeeCCCceee
Q 028997           73 GIIVVHEVKCKLYVKSSDPADKDTWKDRGTG-----QLSIKCKEGISKGTKESKPTILVRND-VGRVLLNALLYPGIKTN  146 (200)
Q Consensus        73 dE~~vf~~RaKLf~~~~~~~~~~~WkERGvG-----~Lkil~~k~~~~~t~~~k~RlvmR~D-~gkVlLN~~L~~~m~~~  146 (200)
                      .|++|+++||+||...++   .+.|..+|.|     .++|+.+..      +...|||+|+. .++||+|+.|+++|.|+
T Consensus         2 ~E~~i~~~~A~V~~~d~~---~~~W~~~g~G~~~l~~V~i~~~~~------~~~~Riv~~~~~~~~vi~n~~i~~~~~y~   72 (130)
T 1qc6_A            2 SEQSICQARASVMVYDDT---SKKWVPIKPGQQGFSRINIYHNTA------SSTFRVVGVKLQDQQVVINYSIVKGLKYN   72 (130)
T ss_dssp             CCEEEEEEEEEEEEEETT---TTEEEECC-----CEEEEEEEETT------TTEEEEEEECTTTCCEEEEEECCTTCEEE
T ss_pred             CceeEEEEEEEEEEECCC---CCceeECCCCceeeeEEEEEecCC------CcEEEEEEEeCCCCeEEEeeEEeCCcEEe
Confidence            378999999999955433   2579999998     788888862      56899999997 99999999999999999


Q ss_pred             ecCCcEEEEEEccCCCCCCCCCCCCcceEEEEEcCCHHHHHHHHHHHHHhC
Q 028997          147 LQKNSIVAIFHTSGDDAGGGNNGSAAARTFLIRTKTEEDRNKLATAIQEYA  197 (200)
Q Consensus       147 ~~k~~v~~i~~~~~~~~~e~~~~~~~~~~~liR~kt~e~A~eL~~~i~e~~  197 (200)
                      ...... ..|.  ++           -..|-|.|.++++|++|+++|++.+
T Consensus        73 ~~~~~F-h~w~--~~-----------~~~~GL~F~se~eA~~F~~~~~~al  109 (130)
T 1qc6_A           73 QATPTF-HQWR--DA-----------RQVYGLNFASKEEATTFSNAMLFAL  109 (130)
T ss_dssp             EEETTE-EEEE--CS-----------SCEEEEEESCHHHHHHHHHHHHHHH
T ss_pred             ccCCee-EEEE--cC-----------CEEEEEecCCHHHHHHHHHHHHHHH
Confidence            855544 2232  21           2699999999999999999998753

>1ddw_A GLGF-domain protein homer; pleckstrin homology domain fold, signaling protein; 1.70A {Rattus norvegicus} SCOP: b.55.1.4 PDB: 1ddv_A 2p8v_A 1i7a_A*

Probab=99.02  E-value=6.4e-09  Score=80.63  Aligned_cols=103  Identities=14%  Similarity=0.261  Sum_probs=78.2

Q ss_pred             CceeEEEEceeEEEecCCCCCCCCCcccceeeEE--eeeecCCCCCCCCCceEEEEEccccceeeceeeCCCceeeecCC
Q 028997           73 GIIVVHEVKCKLYVKSSDPADKDTWKDRGTGQLS--IKCKEGISKGTKESKPTILVRNDVGRVLLNALLYPGIKTNLQKN  150 (200)
Q Consensus        73 dE~~vf~~RaKLf~~~~~~~~~~~WkERGvG~Lk--il~~k~~~~~t~~~k~RlvmR~D~gkVlLN~~L~~~m~~~~~k~  150 (200)
                      .|.+|++.||.||...+.  .++.|..+|.|.++  |.++.     + .+.+||+.|. .++|++|..|+++|.|+....
T Consensus         2 ~E~~i~~~rA~V~~~D~~--tk~~W~p~g~~~~~V~~~~d~-----~-~~~yRIv~~~-~~~vv~n~~i~~~l~y~~a~p   72 (120)
T 1ddw_A            2 GEQPIFSTRAHVFQIDPN--TKKNWVPTSKHAVTVSYFYDS-----T-RNVYRIISLD-GSKAIINSTITPNMTFTKTSQ   72 (120)
T ss_dssp             CEEEEEEEEEEEEEECTT--TSCSEEESCSSCEEEEEEEET-----T-TTEEEEEEEE-TTEEEEEEECCTTCCCEECSS
T ss_pred             CceEEEEEEEEEEEEcCC--CCCceEeCCCCceEEEEEEcC-----C-CCEEEEEEcc-CCEEEEeCEecCCcEEeeCCc
Confidence            478999999999955332  22499996666555  66664     2 4569999987 578999999999999998655


Q ss_pred             cEEEEEEccCCCCCCCCCCCCcceEEEEEcCCHHHHHHHHHHHHHh
Q 028997          151 SIVAIFHTSGDDAGGGNNGSAAARTFLIRTKTEEDRNKLATAIQEY  196 (200)
Q Consensus       151 ~v~~i~~~~~~~~~e~~~~~~~~~~~liR~kt~e~A~eL~~~i~e~  196 (200)
                      .. .-|...+           ....|-|.|.++++|.+|...|++.
T Consensus        73 ~F-hqW~d~~-----------~~~~~GLnF~s~~eA~~F~~~~~~~  106 (120)
T 1ddw_A           73 KF-GQWADSR-----------ANTVYGLGFSSEHHLSKFAEKFQEF  106 (120)
T ss_dssp             SE-EEEEETT-----------TTEEEEEECSSHHHHHHHHHHHHHH
T ss_pred             cc-cEEEcCC-----------CcEEEEeccCCHHHHHHHHHHHHHH
Confidence            44 2233211           2489999999999999999999875

>1i2h_A PSD-ZIP45(homer-1C/VESL-1L); enabled VAsp homology 1 domain, signaling protein; 1.80A {Rattus norvegicus} SCOP: b.55.1.4

Probab=99.01  E-value=3.8e-09  Score=86.37  Aligned_cols=103  Identities=14%  Similarity=0.261  Sum_probs=78.0

Q ss_pred             CceeEEEEceeEEEecCCCCCCCCCcccceeeEE--eeeecCCCCCCCCCceEEEEEccccceeeceeeCCCceeeecCC
Q 028997           73 GIIVVHEVKCKLYVKSSDPADKDTWKDRGTGQLS--IKCKEGISKGTKESKPTILVRNDVGRVLLNALLYPGIKTNLQKN  150 (200)
Q Consensus        73 dE~~vf~~RaKLf~~~~~~~~~~~WkERGvG~Lk--il~~k~~~~~t~~~k~RlvmR~D~gkVlLN~~L~~~m~~~~~k~  150 (200)
                      .|.+||+.||.||...+.  .++.|...|.|.++  |.++.     + .+.+||+.|. .++|++|..|+++|+|+....
T Consensus         7 ~E~~I~s~rA~Vm~~D~~--tk~~WvP~g~~~~~V~i~~d~-----~-rnsyRIvg~~-d~kvvinc~I~~~l~Y~kasp   77 (168)
T 1i2h_A            7 GEQPIFSTRAHVFQIDPN--TKKNWVPTSKHAVTVSYFYDS-----T-RNVYRIISLD-GSKAIINSTITPNMTFTKTSQ   77 (168)
T ss_dssp             SSCCSEEEEEEEEEECTT--SSCCSEESCSSCEEEEEEEET-----T-TTEEEEEEEE-TTEEEEEEECCTTCCEEEEET
T ss_pred             cceeEEEEEEEEEEECCC--CCCceeecCCCCeEEEEEEcC-----C-CCEEEEEEcc-CCEEEEecEecCCcEEeeCCc
Confidence            577899999999965332  23489996666665  66654     2 4569999988 578999999999999988554


Q ss_pred             cEEEEEEccCCCCCCCCCCCCcceEEEEEcCCHHHHHHHHHHHHHh
Q 028997          151 SIVAIFHTSGDDAGGGNNGSAAARTFLIRTKTEEDRNKLATAIQEY  196 (200)
Q Consensus       151 ~v~~i~~~~~~~~~e~~~~~~~~~~~liR~kt~e~A~eL~~~i~e~  196 (200)
                      .. .-|...+           ....|-|.|.++++|.+|.+.|++.
T Consensus        78 ~F-HqW~d~~-----------~~~v~GLnF~Se~eA~~F~~~~~~a  111 (168)
T 1i2h_A           78 KF-GQWADSR-----------ANTVYGLGFSSEHHLSKFAEKFQEF  111 (168)
T ss_dssp             TE-EEEEETT-----------TTEEEEEEESSHHHHHHHHHHHHHH
T ss_pred             cc-ceeecCC-----------CcEEEEeccCCHHHHHHHHHHHHHH
Confidence            44 2233211           2489999999999999999999875

>1evh_A WH1 domain, protein (MENA EVH1 domain); molecular recognition, actin dynamics, contractIle protein; 1.80A {Mus musculus} SCOP: b.55.1.4 PDB: 2xqn_M 2iyb_A

Probab=98.64  E-value=5.2e-07  Score=68.89  Aligned_cols=101  Identities=17%  Similarity=0.261  Sum_probs=77.9

Q ss_pred             CceeEEEEceeEEEecCCCCCCCCCcccc--eee--EEeeeecCCCCCCCCCceEEEEEcc-ccceeeceeeCCCceeee
Q 028997           73 GIIVVHEVKCKLYVKSSDPADKDTWKDRG--TGQ--LSIKCKEGISKGTKESKPTILVRND-VGRVLLNALLYPGIKTNL  147 (200)
Q Consensus        73 dE~~vf~~RaKLf~~~~~~~~~~~WkERG--vG~--Lkil~~k~~~~~t~~~k~RlvmR~D-~gkVlLN~~L~~~m~~~~  147 (200)
                      .|.+|+++||.+|...+.   .+.|.-.|  -|.  +.|.++.     + .+.+||+.|.- .++|++|..|+++|.|+.
T Consensus         2 ~e~~i~~~~A~V~~~d~~---~~~W~p~~~~~g~s~V~~~~d~-----~-~~~yrIv~~~l~~~~vv~~~~l~~~~~y~~   72 (112)
T 1evh_A            2 SEQSICQARAAVMVYDDA---NKKWVPAGGSTGFSRVHIYHHT-----G-NNTFRVVGRKIQDHQVVINCAIPKGLKYNQ   72 (112)
T ss_dssp             CEEEEEEEEEEEEEEETT---TTEEEEGGGCCSCEEEEEEEET-----T-TTEEEEEEEETTTCCEEEEEEECTTCCCBC
T ss_pred             CceeEEEEEEEEEEEcCC---CCceEECCCCCCceEEEEEEEC-----C-CCEEEEEEEECCCCcEEEeeEecCCceEEe
Confidence            378899999999954332   24899988  344  7887764     2 45799999985 889999999999999987


Q ss_pred             cCCcEEEEEEccCCCCCCCCCCCCcceEEEEEcCCHHHHHHHHHHHHHh
Q 028997          148 QKNSIVAIFHTSGDDAGGGNNGSAAARTFLIRTKTEEDRNKLATAIQEY  196 (200)
Q Consensus       148 ~k~~v~~i~~~~~~~~~e~~~~~~~~~~~liR~kt~e~A~eL~~~i~e~  196 (200)
                      .....- -|.  ++          . ..|=|-|.++++|.+|.+.|++.
T Consensus        73 ~~p~Fh-~w~--~~----------~-~~~GLnF~se~eA~~F~~~v~~a  107 (112)
T 1evh_A           73 ATQTFH-QWR--DA----------R-QVYGLNFGSKEDANVFASAMMHA  107 (112)
T ss_dssp             CSSSEE-EEE--CS----------S-CEEEEEESSHHHHHHHHHHHHHH
T ss_pred             cCccce-eEe--cC----------C-EEEEEecCCHHHHHHHHHHHHHH
Confidence            555431 122  21          1 69999999999999999999875

>1egx_A VAsp, vasodilator-stimulated phosphoprotein; EVH1, VAsp-ENA, poly-proline-binding domain, signaling protein; NMR {Homo sapiens} SCOP: b.55.1.4

Probab=98.60  E-value=6.4e-07  Score=68.72  Aligned_cols=101  Identities=15%  Similarity=0.253  Sum_probs=78.2

Q ss_pred             ceeEEEEceeEEEecCCCCCCCCCcccce---e--eEEeeeecCCCCCCCCCceEEEEEcc--ccceeeceeeCCCceee
Q 028997           74 IIVVHEVKCKLYVKSSDPADKDTWKDRGT---G--QLSIKCKEGISKGTKESKPTILVRND--VGRVLLNALLYPGIKTN  146 (200)
Q Consensus        74 E~~vf~~RaKLf~~~~~~~~~~~WkERGv---G--~Lkil~~k~~~~~t~~~k~RlvmR~D--~gkVlLN~~L~~~m~~~  146 (200)
                      |.+|+++||.+|...+.   .+.|.-.|.   |  .+.|.++.     + .+.+||+.|.-  .++|++|..|+++|.|+
T Consensus         3 e~~i~~~~A~V~~~d~~---~~~W~p~~~g~~gvs~V~~~~d~-----~-~~~yrI~~~~l~~~~~vv~~~~l~~~l~y~   73 (115)
T 1egx_A            3 ETVICSSRATVMLYDDG---NKRWLPAGTGPQAFSRVQIYHNP-----T-ANSFRVVGRKMQPDQQVVINCAIVRGVKYN   73 (115)
T ss_dssp             SCEEEEEEEECBEECTT---TSSCCBSSCSCCCCEEEEEEEET-----T-TTEEEEEEEESSTTCCEEEEEEECSSCCCC
T ss_pred             ceeEEEEEEEEEEEcCC---CCceeECCCCCCCccEEEEEEeC-----C-CCEEEEEEEEcCCCCEEEEeeEEcCCceEE
Confidence            67899999999965332   246999887   4  48888875     2 45799998884  67899999999999998


Q ss_pred             ecCCcEEEEEEccCCCCCCCCCCCCcceEEEEEcCCHHHHHHHHHHHHHhC
Q 028997          147 LQKNSIVAIFHTSGDDAGGGNNGSAAARTFLIRTKTEEDRNKLATAIQEYA  197 (200)
Q Consensus       147 ~~k~~v~~i~~~~~~~~~e~~~~~~~~~~~liR~kt~e~A~eL~~~i~e~~  197 (200)
                      ......- -|.  ++          . ..|=|-|.++++|.+|.++|++.+
T Consensus        74 ~~~p~FH-~w~--~~----------~-~~~GLnF~se~eA~~F~~~v~~al  110 (115)
T 1egx_A           74 QATPNFH-QWR--DA----------R-QVWGLNFGSKEDAAQFAAGMASAL  110 (115)
T ss_dssp             CSSTTEE-EEE--SS----------S-CEEEEEESSHHHHHHHHHHHHHHH
T ss_pred             ecCccce-EEe--cC----------C-EEEEEecCCHHHHHHHHHHHHHHH
Confidence            7655441 122  21          1 699999999999999999998753

>1xod_A Spred1; sprouty, EVH1, peptide-binding, signaling protein; 1.15A {Xenopus tropicalis} SCOP: b.55.1.4 PDB: 1tj6_A

Probab=98.48  E-value=1.4e-06  Score=67.13  Aligned_cols=107  Identities=12%  Similarity=0.148  Sum_probs=72.7

Q ss_pred             CceeEEEEceeEEEecCCCCCCCCCcccceeeE---EeeeecCCCCCCCCCceEEEEEcc-ccceeeceeeCCCceeeec
Q 028997           73 GIIVVHEVKCKLYVKSSDPADKDTWKDRGTGQL---SIKCKEGISKGTKESKPTILVRND-VGRVLLNALLYPGIKTNLQ  148 (200)
Q Consensus        73 dE~~vf~~RaKLf~~~~~~~~~~~WkERGvG~L---kil~~k~~~~~t~~~k~RlvmR~D-~gkVlLN~~L~~~m~~~~~  148 (200)
                      +|..|+++||.+|...+.   .+.|.-.|-|-|   .|...+.+.+.+ ...+||+.|.- .++|++|..|+++|.|+..
T Consensus         2 ~~~~i~~~~A~V~~~d~~---~~~W~p~~~g~ls~v~i~~~~~~~d~~-~~~yrIv~~~l~~~~vv~~~~l~~~~~y~~~   77 (118)
T 1xod_A            2 SDDSYARVRAVVMTRDDS---SGGWLQLGGGGLSSVTVSKTLQPGDSG-GTEFLVHGERLRDKTVVLECVLRRDLVYNKV   77 (118)
T ss_dssp             ---CCEEEEEEEEEECSS---SSCEEEGGGCCCEEEEEECC----------CCEEEEEETTTCCEEEEEECCTTCEEEEE
T ss_pred             CCccEEEEEEEEeeEcCC---CCCEeeCCCCCcccEEEEEecCcCCCC-CCEEEEEEEECCCCeEEEEEEEeCCcEEEec
Confidence            356799999999954332   258999887764   444432111112 45699999986 8899999999999999874


Q ss_pred             CCcEEEEEEccCCCCCCCCCCCCcceEEEEEcCCHHHHHHHHHHHHHhC
Q 028997          149 KNSIVAIFHTSGDDAGGGNNGSAAARTFLIRTKTEEDRNKLATAIQEYA  197 (200)
Q Consensus       149 k~~v~~i~~~~~~~~~e~~~~~~~~~~~liR~kt~e~A~eL~~~i~e~~  197 (200)
                      ....- -|.. +            -..|=|-|.++++|.+|.++|++.+
T Consensus        78 ~p~Fh-~w~~-~------------~~~~GL~F~se~eA~~F~~~v~~al  112 (118)
T 1xod_A           78 TPTFH-HWRI-G------------DKKFGLTFQSPADARAFDRGIRRAI  112 (118)
T ss_dssp             ETTEE-EEEE-T------------TEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred             CCcce-EEEe-C------------CEEEEEecCCHHHHHHHHHHHHHHH
Confidence            44331 1221 1            1579999999999999999998753

>2jp2_A Spred-2, sprouty-related, EVH1 domain-containing protein 2; solution structure, structural genomics, structural genomics consortium, SGC; NMR {Homo sapiens}

Probab=98.47  E-value=4e-06  Score=65.37  Aligned_cols=108  Identities=11%  Similarity=0.102  Sum_probs=78.0

Q ss_pred             CCceeEEEEceeEEEecCCCCCCCCCcccceeeE---EeeeecCCCCCCCCCceEEEEEcc-ccceeeceeeCCCceeee
Q 028997           72 RGIIVVHEVKCKLYVKSSDPADKDTWKDRGTGQL---SIKCKEGISKGTKESKPTILVRND-VGRVLLNALLYPGIKTNL  147 (200)
Q Consensus        72 EdE~~vf~~RaKLf~~~~~~~~~~~WkERGvG~L---kil~~k~~~~~t~~~k~RlvmR~D-~gkVlLN~~L~~~m~~~~  147 (200)
                      ..|.+|+++||-+|...+.   .+.|.-.|-|-|   .|...+.+.+.+ ...+||+.+.- -++|++|..|+++|+|+.
T Consensus        10 ~~~~~i~~~~A~Vm~~D~~---~~~W~p~~~g~ls~v~v~~~~~~~d~~-~~~yrI~~~~l~d~~vv~~~~l~~~l~Y~~   85 (126)
T 2jp2_A           10 DDDSYIVRVKAVVMTRDDS---SGGWFPQEGGGISRVGVCKVMHPEGNG-RSGFLIHGERQKDKLVVLECYVRKDLVYTK   85 (126)
T ss_dssp             SCCSEEEEEEEEEEEECTT---SSSSEECSCCSCEEEEEECCBCTTCSS-CBCEEEEEEESSSSCEEEEEEESSCCCEEE
T ss_pred             CCcceEEEEEEEEeeEcCC---CCCEeeCCCCCcccEEEEEecCCCCCC-CCEEEEEEEEcCCCeEEEEEEEeCCceEEe
Confidence            4678899999999954332   258999888763   344333111122 45799999986 899999999999999987


Q ss_pred             cCCcEEEEEEccCCCCCCCCCCCCcceEEEEEcCCHHHHHHHHHHHHHhC
Q 028997          148 QKNSIVAIFHTSGDDAGGGNNGSAAARTFLIRTKTEEDRNKLATAIQEYA  197 (200)
Q Consensus       148 ~k~~v~~i~~~~~~~~~e~~~~~~~~~~~liR~kt~e~A~eL~~~i~e~~  197 (200)
                      .....- -|.  +.          . ..|-|-|.++++|.+|.++|++..
T Consensus        86 ~~p~FH-~w~--~~----------~-~~~GLnF~se~eA~~F~~~v~~al  121 (126)
T 2jp2_A           86 ANPTFH-HWK--VD----------N-RKFGLTFQSPADARAFDRGVRKAI  121 (126)
T ss_dssp             EETTEE-EEE--CS----------S-SEEEEEESSHHHHHHHHHHHHHHH
T ss_pred             cCCcce-EEE--cC----------C-EEEEEecCCHHHHHHHHHHHHHHH
Confidence            544331 122  21          1 469999999999999999998753

>3syx_A Sprouty-related, EVH1 domain-containing protein 1; WH1 domain, human sprouty-related, EVH1 domain-containing PR Q7Z699; 2.45A {Homo sapiens}

Probab=97.62  E-value=0.0012  Score=51.79  Aligned_cols=103  Identities=11%  Similarity=0.114  Sum_probs=69.9

Q ss_pred             eEEEEceeEEEecCCCCCCCCCccccee---eEEeeeecCCCCCCCCCceEEEEEcc-ccceeeceeeCCCceeeecCCc
Q 028997           76 VVHEVKCKLYVKSSDPADKDTWKDRGTG---QLSIKCKEGISKGTKESKPTILVRND-VGRVLLNALLYPGIKTNLQKNS  151 (200)
Q Consensus        76 ~vf~~RaKLf~~~~~~~~~~~WkERGvG---~Lkil~~k~~~~~t~~~k~RlvmR~D-~gkVlLN~~L~~~m~~~~~k~~  151 (200)
                      ..|.+||-+|...+.   ++.|---|-|   .+-|.++......+ ...+||+=|+- -.+|+||..|.++|+|+.....
T Consensus        12 ~~~~~rA~Vm~~Dd~---tk~WlP~gg~glS~v~iy~~~~~~~~~-~~~yRIvg~r~~d~~vvinc~I~~~l~Ynkatp~   87 (130)
T 3syx_A           12 SYARVRAVVMTRDDS---SGGWLPLGGSGLSSVTVFKVPHQEENG-CADFFIRGERLRDKMVVLECMLKKDLIYNKVTPT   87 (130)
T ss_dssp             EEEEEEEEEEEECSS---SSCEEESSSSCCEEEEEEEEESSSTTS-SEEEEEEEEETTTCCEEEEEECCTTCEEEEEETT
T ss_pred             eeeEEEEEeeeEcCC---CCceEeCCCCCCceEEEEeccCCCCCC-CcEEEEEEEecCCCeEEEeeeecCCceEEecccc
Confidence            478999999954432   2579987533   44455542111111 24689998865 5679999999999999875554


Q ss_pred             EEEEEEccCCCCCCCCCCCCcceEEEEEcCCHHHHHHHHHHHHHh
Q 028997          152 IVAIFHTSGDDAGGGNNGSAAARTFLIRTKTEEDRNKLATAIQEY  196 (200)
Q Consensus       152 v~~i~~~~~~~~~e~~~~~~~~~~~liR~kt~e~A~eL~~~i~e~  196 (200)
                      .-- |...            . ..|=|-|.++++|.+|.+.|..+
T Consensus        88 FHq-Wrd~------------~-~~yGL~F~S~~dA~~F~~~~~~A  118 (130)
T 3syx_A           88 FHH-WKID------------D-KKFGLTFQSPADARAFDRGIRRA  118 (130)
T ss_dssp             EEE-EEET------------T-EEEEEEESSHHHHHHHHHHHHHH
T ss_pred             ccc-cccc------------C-eEeecccCCHHHHHHHHHHHHHH
Confidence            421 2221            1 46999999999999998877654

>1mke_A WIP - N-WAsp, fusion protein consisting of wiskott-aldrich syndrome protein interacting protein...; polyproline, protein-protein complex; NMR {Rattus norvegicus} SCOP: b.55.1.4

Probab=96.98  E-value=0.0094  Score=47.69  Aligned_cols=99  Identities=14%  Similarity=0.238  Sum_probs=73.1

Q ss_pred             eeEEEEceeEEEecCCCCCCCCCcccceeeEEeeeecCCCCCCCCCceEEEEEccccceeeceeeCCCceeeecCCcEEE
Q 028997           75 IVVHEVKCKLYVKSSDPADKDTWKDRGTGQLSIKCKEGISKGTKESKPTILVRNDVGRVLLNALLYPGIKTNLQKNSIVA  154 (200)
Q Consensus        75 ~~vf~~RaKLf~~~~~~~~~~~WkERGvG~Lkil~~k~~~~~t~~~k~RlvmR~D~gkVlLN~~L~~~m~~~~~k~~v~~  154 (200)
                      .+|...=|.||+-..+    +.|.-.+.|.|-+.++..    ..+--.||+-.. .++|+.+..|+.+|+|+......  
T Consensus        41 ~~lataVaqLy~a~~~----~~W~~~~~Gal~~VkD~~----~rsyf~RlvDl~-~~~viweqELY~~f~Y~~~r~~F--  109 (152)
T 1mke_A           41 VTMSSAVVQLYAADRN----CMWSKKCSGVACLVKDNP----QRSYFLRIFDIK-DGKLLWEQELYNNFVYNSPRGYF--  109 (152)
T ss_dssp             EEEEEEEEEEEEEETT----TEEEEEEEEEEEEEEETT----TTEEEEEEECSS-SCSEEEEEECCSSCCCBCSSSSE--
T ss_pred             cEEEEeeEEEEEECCC----CceEecCceEEEEEEECC----CCeEEEEEEEcc-CCeEEEEeecccceeeccCCCeE--
Confidence            5788888999965332    489999999999988651    111123777665 57899999999999998755533  


Q ss_pred             EEEccCCCCCCCCCCCCcceEEEEEcCCHHHHHHHHHHHHHh
Q 028997          155 IFHTSGDDAGGGNNGSAAARTFLIRTKTEEDRNKLATAIQEY  196 (200)
Q Consensus       155 i~~~~~~~~~e~~~~~~~~~~~liR~kt~e~A~eL~~~i~e~  196 (200)
                      ..+..+            -.++-|.|-+.++|.+|++++.+.
T Consensus       110 HtFe~d------------~c~~GLnFade~EA~~F~~~V~~~  139 (152)
T 1mke_A          110 HTFAGD------------TCQVALNFANEEEAKKFRKAVTDL  139 (152)
T ss_dssp             EEEECS------------SSEEEEEESSHHHHHHHHHHHHHH
T ss_pred             EEEecC------------CcEEEEeeCCHHHHHHHHHHHHHH
Confidence            222111            158999999999999999999765

>2ifs_A N-WAsp, wiskott-aldrich syndrome protien ineracting protein and neural wiskott-aldrich syndrome...; verprolin, polyproline, protein- protein complex; NMR {Homo sapiens}

Probab=96.97  E-value=0.0094  Score=48.44  Aligned_cols=99  Identities=14%  Similarity=0.238  Sum_probs=73.3

Q ss_pred             eeEEEEceeEEEecCCCCCCCCCcccceeeEEeeeecCCCCCCCCCceEEEEEccccceeeceeeCCCceeeecCCcEEE
Q 028997           75 IVVHEVKCKLYVKSSDPADKDTWKDRGTGQLSIKCKEGISKGTKESKPTILVRNDVGRVLLNALLYPGIKTNLQKNSIVA  154 (200)
Q Consensus        75 ~~vf~~RaKLf~~~~~~~~~~~WkERGvG~Lkil~~k~~~~~t~~~k~RlvmR~D~gkVlLN~~L~~~m~~~~~k~~v~~  154 (200)
                      .+|...=|.||+-..+    +.|.-.+.|.|-+.++..    ..+--.||+-.. .++|+.|..|+.+|+|+......  
T Consensus        58 ~~lataVaqLy~a~~~----~~W~~~~~Gal~~vkD~~----~rsyf~RlvDl~-~~~vvweqELY~~f~Y~~~r~~F--  126 (169)
T 2ifs_A           58 VTMSSAVVQLYAADRN----CMWSKKCSGVACLVKDNP----QRSYFLRIFDIK-DGKLLWEQELYNNFVYNSPRGYF--  126 (169)
T ss_dssp             EEEEEEEEEEEEEETT----TEEEEEEEEEEEEEEETT----TTEEEEEEEETT-TCCCCEEEECCSSCCCBCCCSSE--
T ss_pred             eEEEEEEEEEEEECCC----CeeEecCceEEEEEEECC----CCeEEEEEEEcc-CCeEEEEeecccceeeccCCCeE--
Confidence            3688888999965332    489999999999888641    111123888776 57899999999999998755533  


Q ss_pred             EEEccCCCCCCCCCCCCcceEEEEEcCCHHHHHHHHHHHHHh
Q 028997          155 IFHTSGDDAGGGNNGSAAARTFLIRTKTEEDRNKLATAIQEY  196 (200)
Q Consensus       155 i~~~~~~~~~e~~~~~~~~~~~liR~kt~e~A~eL~~~i~e~  196 (200)
                      ..+..+            -.++-|.|.+.++|.+|+++|.+.
T Consensus       127 HtFe~d------------~c~~GLnFade~EA~~F~~~V~~~  156 (169)
T 2ifs_A          127 HTFAGD------------TCQVALNFANEEEAKKFRKAVTDL  156 (169)
T ss_dssp             EEEECS------------SSEEEEECSCHHHHHHHHHHHHHH
T ss_pred             EEeecC------------CcEEEEeeCCHHHHHHHHHHHHHH
Confidence            222111            158999999999999999999765

>2lyd_A Decapping protein 1; DCP1, XRN1, transcription-protein binding complex; NMR {Drosophila melanogaster}

Probab=89.13  E-value=5.3  Score=30.82  Aligned_cols=92  Identities=12%  Similarity=0.242  Sum_probs=63.5

Q ss_pred             EceeEEEecCCCCCCCCCcccce-eeEEeeeecCCCCCCCCCceEEEEEcc--ccceeeceeeCCCceeeecCCcEEEEE
Q 028997           80 VKCKLYVKSSDPADKDTWKDRGT-GQLSIKCKEGISKGTKESKPTILVRND--VGRVLLNALLYPGIKTNLQKNSIVAIF  156 (200)
Q Consensus        80 ~RaKLf~~~~~~~~~~~WkERGv-G~Lkil~~k~~~~~t~~~k~RlvmR~D--~gkVlLN~~L~~~m~~~~~k~~v~~i~  156 (200)
                      .-|-||.+.++   ..+|.-.|+ |+|-|-+..     + .-++.|++=+-  +..++.  .|.+++.+....+-+  ++
T Consensus        36 ~~v~vY~f~~~---~~~W~K~~iEG~LFv~~R~-----~-~P~~~~ivLNR~~~~n~~~--~l~~~~~~e~~~~~l--i~  102 (134)
T 2lyd_A           36 SHVAFYTFNSS---QNEWEKTDVEGAFFIYHRN-----A-EPFHSIFINNRLNTTSFVE--PITGSLELQSQPPFL--LY  102 (134)
T ss_dssp             EEEEEEEEETT---TTEEEEEEEEEEEEEEECS-----S-SSSEEEEEEETTTTEEEEE--ECCSSCEEEEETTEE--EE
T ss_pred             CeEEEEEecCC---cCceeEcCCcceEEEEEcc-----C-CCceEEEEEcCCCCcceeE--EcCCCcEEEeeCCEE--EE
Confidence            34778966543   258988888 788887754     2 23566555444  555554  578999999888855  22


Q ss_pred             EccCCCCCCCCCCCCcceEEEEEcCCHHHHHHHHHHHHHh
Q 028997          157 HTSGDDAGGGNNGSAAARTFLIRTKTEEDRNKLATAIQEY  196 (200)
Q Consensus       157 ~~~~~~~~e~~~~~~~~~~~liR~kt~e~A~eL~~~i~e~  196 (200)
                      -..            .-..|-|.|=+.++++.+.+.|++.
T Consensus       103 r~~------------~~~I~GiWf~~~~d~~~i~~~l~~l  130 (134)
T 2lyd_A          103 RNE------------RSRIRGFWFYNSEECDRISGLVNGL  130 (134)
T ss_dssp             EEG------------GGEEEEEEESSHHHHHHHHHHHHHH
T ss_pred             ECC------------CCcEEEEEecChHHHHHHHHHHHHH
Confidence            221            2368999999999999999988764

>2qkl_A DCP1 protein, SPBC3B9.21 protein; protein-protein complex, hydrolase; 2.33A {Schizosaccharomyces pombe} PDB: 2qkm_A*

Probab=80.76  E-value=17  Score=27.74  Aligned_cols=92  Identities=10%  Similarity=0.171  Sum_probs=60.5

Q ss_pred             EceeEEEecCCCCCCCCCcccce-eeEEeeeecCCCCCCCCCceEEEEEcc--ccceeeceeeCCCceeeecCCcEEEEE
Q 028997           80 VKCKLYVKSSDPADKDTWKDRGT-GQLSIKCKEGISKGTKESKPTILVRND--VGRVLLNALLYPGIKTNLQKNSIVAIF  156 (200)
Q Consensus        80 ~RaKLf~~~~~~~~~~~WkERGv-G~Lkil~~k~~~~~t~~~k~RlvmR~D--~gkVlLN~~L~~~m~~~~~k~~v~~i~  156 (200)
                      .-|-||.+..+   +++|.-.|| |+|-|-+..       .-+.++++=+-  ..+.+  ..|.+++.++.+.+-+  ++
T Consensus        31 ~~v~vY~f~~~---~~~W~K~~iEGtLFv~~R~-------~P~~~~iVlNR~~~~n~~--~~i~~~~~~e~~~~~l--~~   96 (127)
T 2qkl_A           31 SHVAVYQFDVG---SQKWLKTSIEGTFFLVKDQ-------RARVGYVILNRNSPENLY--LFINHPSNVHLVDRYL--IH   96 (127)
T ss_dssp             EEEEEECC---------CCEEEEEEEEEEEEET-------TCCEEEEEEESSSSCCEE--EEECSGGGEEEETTEE--EE
T ss_pred             CeEEEEEecCC---CCceEEcCcEEEEEEEEcc-------CCceEEEEEcCCCCcCee--EecCCCceEEEeCCEE--EE
Confidence            44778855432   258999998 778777753       12455444333  55544  4688899999988855  23


Q ss_pred             EccCCCCCCCCCCCCcceEEEEEcCCHHHHHHHHHHHHHhC
Q 028997          157 HTSGDDAGGGNNGSAAARTFLIRTKTEEDRNKLATAIQEYA  197 (200)
Q Consensus       157 ~~~~~~~~e~~~~~~~~~~~liR~kt~e~A~eL~~~i~e~~  197 (200)
                      -..+            ...|-|.|-+.++++.+.+.|++.+
T Consensus        97 r~~~------------~~i~GiWf~~~~d~~~i~~~l~~ll  125 (127)
T 2qkl_A           97 RTEN------------QHVVGLWMFDPNDMSRIFNIVKESL  125 (127)
T ss_dssp             EETT------------TEEEEEEESSTHHHHHHHHHHHHHT
T ss_pred             EcCC------------CcEEEEEEEchHHHHHHHHHHHHHH
Confidence            3222            3799999999999999999998754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	200
d1rrpb_	134	b.55.1.3 (B:) Nuclear pore complex protein Nup358	2e-19
d1k5db_	146	b.55.1.3 (B:) Ran-binding protein 1, Ranbp1 {Human	2e-19
d2crfa1	137	b.55.1.3 (A:8-144) Ran binding protein 3 {Human (H	5e-19
d1xkea1	118	b.55.1.3 (A:7-124) Ran-binding protein 2 {Human (H	4e-18

>d1rrpb_ b.55.1.3 (B:) Nuclear pore complex protein Nup358 {Human (Homo sapiens) [TaxId: 9606]} Length = 134

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Ran-binding domain
domain: Nuclear pore complex protein Nup358
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.0 bits (192), Expect = 2e-19
 Identities = 30/139 (21%), Positives = 49/139 (35%), Gaps = 15/139 (10%)

Query: 58  VPQPSSPSLKKSEERGIIVVHEVKCKLYVKSSDPADKDTWKDRGTGQLSIKCKEGISKGT 117
           VP P    +K  EE         + KL+    +      WK+RG G + I       +  
Sbjct: 6   VPLPDKIEVKTGEE-DEEEFFCNRAKLFRFDVES---KEWKERGIGNVKIL------RHK 55

Query: 118 KESKPTILVRND-VGRVLLNALLYPGIKTNLQKNSIVAIFHTSGDDAGGGNNGSAAARTF 176
              K  +L+R + V ++  N  + P +K      S  +    + D A    +        
Sbjct: 56  TSGKIRLLMRREQVLKICANHYISPDMKLTPNAGSDRSFVWHALDYA----DELPKPEQL 111

Query: 177 LIRTKTEEDRNKLATAIQE 195
            IR KT E+        +E
Sbjct: 112 AIRFKTPEEAALFKCKFEE 130

>d1k5db_ b.55.1.3 (B:) Ran-binding protein 1, Ranbp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 146

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Ran-binding domain
domain: Ran-binding protein 1, Ranbp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.4 bits (193), Expect = 2e-19
 Identities = 30/147 (20%), Positives = 55/147 (37%), Gaps = 13/147 (8%)

Query: 50  NDADGEDEVPQPSSPSLKKSEERGIIVVHEVKCKLYVKSSDPADKDTWKDRGTGQLSIKC 109
           +D   E  V  P      K+ E     + +++ KL+ + +   D   WK+RGTG + +  
Sbjct: 2   HDPQFEPIVSLPEQE--IKTLEEDEEELFKMRAKLF-RFASENDLPEWKERGTGDVKLL- 57

Query: 110 KEGISKGTKESKPTILVRND-VGRVLLNALLYPGIKTNLQKNSIVAIFHTSGDDAGGGNN 168
                K  ++    +L+R D   ++  N  + P ++      S  A    +  D     +
Sbjct: 58  -----KHKEKGAIRLLMRRDKTLKICANHYITPMMELKPNAGSDRAWVWNTHADFA---D 109

Query: 169 GSAAARTFLIRTKTEEDRNKLATAIQE 195
                    IR    E+  K  T  +E
Sbjct: 110 ECPKPELLAIRFLNAENAQKFKTKFEE 136

>d2crfa1 b.55.1.3 (A:8-144) Ran binding protein 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 137

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Ran-binding domain
domain: Ran binding protein 3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.3 bits (190), Expect = 5e-19
 Identities = 30/129 (23%), Positives = 57/129 (44%), Gaps = 15/129 (11%)

Query: 68  KSEERGIIVVHEVKCKLYVKSSDPADKDTWKDRGTGQLSIKCKEGISKGTKESKPTILVR 127
            + E     V +++CKL+V         +W +RG G L +        GT +S+  +++R
Sbjct: 13  ITGEEAESNVLQMQCKLFVFDKT---SQSWVERGRGLLRLNDMASTDDGTLQSR--LVMR 67

Query: 128 ND-VGRVLLNALLYPGIKTNLQKNSIVAIFHTSGDDAGGGNNGSAAARTFLIRTKTEEDR 186
                R++LN  L+  ++  + K S  +I  T+ D    G       + FLI   +++  
Sbjct: 68  TQGSLRLILNTKLWAQMQ--IDKASEKSIHITAMDTEDQG------VKVFLISASSKDT- 118

Query: 187 NKLATAIQE 195
            +L  A+  
Sbjct: 119 GQLYAALHH 127

>d1xkea1 b.55.1.3 (A:7-124) Ran-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Ran-binding domain
domain: Ran-binding protein 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.2 bits (182), Expect = 4e-18
 Identities = 26/121 (21%), Positives = 45/121 (37%), Gaps = 14/121 (11%)

Query: 76  VVHEVKCKLYVKSSDPADKDTWKDRGTGQLSIKCKEGISKGTKESKPTILVRND-VGRVL 134
           V++  + KL+   ++      WK+RG G L I       K     K  +L+R + V +V 
Sbjct: 3   VLYSQRVKLFRFDAEV---SQWKERGLGNLKIL------KNEVNGKLRMLMRREQVLKVC 53

Query: 135 LNALLYPGIKTNLQKNSIVAIFHTSGDDAGGGNNGSAAARTFLIRTKTEEDRNKLATAIQ 194
            N  +   +       S  A    + D +    +G A       + KT E   +     +
Sbjct: 54  ANHWITTTMNLKPLSGSDRAWMWLASDFS----DGDAKLEQLAAKFKTPELAEEFKQKFE 109

Query: 195 E 195
           E
Sbjct: 110 E 110

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	200
d1rrpb_	134	Nuclear pore complex protein Nup358 {Human (Homo s	100.0
d1k5db_	146	Ran-binding protein 1, Ranbp1 {Human (Homo sapiens	100.0
d1xkea1	118	Ran-binding protein 2 {Human (Homo sapiens) [TaxId	99.97
d2crfa1	137	Ran binding protein 3 {Human (Homo sapiens) [TaxId	99.97
d1evha_	111	Enabled {Mouse (Mus musculus) [TaxId: 10090]}	99.9
d1egxa_	115	Vasodilator-stimulated phosphoprotein (VASP) {Huma	99.9
d1mkea1	114	Actin regulatory protein WASP {Rat (Rattus norvegi	98.99
d1i2ha_	145	Homer {Rat (Rattus norvegicus) [TaxId: 10116]}	98.34
d1xoda1	114	Sprouty-related, EVH1 domain-containing protein 1,	97.97

>d1rrpb_ b.55.1.3 (B:) Nuclear pore complex protein Nup358 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Ran-binding domain
domain: Nuclear pore complex protein Nup358
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.4e-34  Score=223.40  Aligned_cols=117  Identities=21%  Similarity=0.283  Sum_probs=96.7

Q ss_pred             cccCCCCceeEEEEceeEEEecCCCCCCCCCcccceeeEEeeeecCCCCCCCCCceEEEEEcc-ccceeeceeeCCCcee
Q 028997           67 KKSEERGIIVVHEVKCKLYVKSSDPADKDTWKDRGTGQLSIKCKEGISKGTKESKPTILVRND-VGRVLLNALLYPGIKT  145 (200)
Q Consensus        67 ~~~GEEdE~~vf~~RaKLf~~~~~~~~~~~WkERGvG~Lkil~~k~~~~~t~~~k~RlvmR~D-~gkVlLN~~L~~~m~~  145 (200)
                      ..+|||||++||+.|||||.+..+   .++|+|||+|+||||+++.      ++++|||||+| +|+||||+.|+++|++
T Consensus        14 ~~tgEE~E~~if~~r~KL~~~~~~---~~~WkerGvG~lkil~~~~------t~~~RlvmR~d~~~kv~lN~~i~~~~~~   84 (134)
T d1rrpb_          14 VKTGEEDEEEFFCNRAKLFRFDVE---SKEWKERGIGNVKILRHKT------SGKIRLLMRREQVLKICANHYISPDMKL   84 (134)
T ss_dssp             CCCSCCSEEEEEEEEEEEEEECSS---SSCEEEEEEEEEEEEEESS------SCCCEEEEECTTTCCEEECCBCCSSCCC
T ss_pred             eecCccCcEEEEEEeeEEEEEcCC---CCceeeeeEEEEEEEEcCC------CCcEEEEEEEcCCCcEEEEEEECCCcEE
Confidence            358999999999999999966432   1589999999999999973      67999999999 9999999999999999


Q ss_pred             ee-cCCcEEEEEEccCCCCCCCCCCCCcceEEEEEcCCHHHHHHHHHHHHHhC
Q 028997          146 NL-QKNSIVAIFHTSGDDAGGGNNGSAAARTFLIRTKTEEDRNKLATAIQEYA  197 (200)
Q Consensus       146 ~~-~k~~v~~i~~~~~~~~~e~~~~~~~~~~~liR~kt~e~A~eL~~~i~e~~  197 (200)
                      +. .++...++|...+..+++     .++++|+|||+++++|++|+++|+++.
T Consensus        85 ~~~~~~~~~~~~~~~d~~~~~-----~k~~~~~lrfk~~e~a~~f~~~~~eak  132 (134)
T d1rrpb_          85 TPNAGSDRSFVWHALDYADEL-----PKPEQLAIRFKTPEEAALFKCKFEEAQ  132 (134)
T ss_dssp             BCSTTCTTEEEEEEEECTTSS-----CEEEEEEEECSSHHHHHHHHHHHHHTT
T ss_pred             eecCCCceEEEEEeeccCCCC-----CcEEEEEEEECCHHHHHHHHHHHHHhh
Confidence            97 333333555554443222     278999999999999999999999874

>d1k5db_ b.55.1.3 (B:) Ran-binding protein 1, Ranbp1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Ran-binding domain
domain: Ran-binding protein 1, Ranbp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-33  Score=223.90  Aligned_cols=118  Identities=20%  Similarity=0.300  Sum_probs=94.8

Q ss_pred             cccCCCCceeEEEEceeEEEecCCCCCCCCCcccceeeEEeeeecCCCCCCCCCceEEEEEcc-ccceeeceeeCCCcee
Q 028997           67 KKSEERGIIVVHEVKCKLYVKSSDPADKDTWKDRGTGQLSIKCKEGISKGTKESKPTILVRND-VGRVLLNALLYPGIKT  145 (200)
Q Consensus        67 ~~~GEEdE~~vf~~RaKLf~~~~~~~~~~~WkERGvG~Lkil~~k~~~~~t~~~k~RlvmR~D-~gkVlLN~~L~~~m~~  145 (200)
                      ..+|||+|++||++|||||.+.+. .+.++|+|||+|+||||+++.      ++++|||||+| +||||||+.|+++|++
T Consensus        17 v~tgEE~E~~lf~~r~Kl~~f~~~-~~~~~WkerGvG~lkilk~k~------t~~~RllmR~d~~~kv~lN~~i~~~m~~   89 (146)
T d1k5db_          17 IKTLEEDEEELFKMRAKLFRFASE-NDLPEWKERGTGDVKLLKHKE------KGAIRLLMRRDKTLKICANHYITPMMEL   89 (146)
T ss_dssp             CCCSCSSCCCSEEEEEEEEEECCT-TSSCCEEEEEEEEEEEEECSS------SCCEEEEEEETTTCCEEEEEECCSSCCC
T ss_pred             cccCccCceEEEEEeeEEEEEccc-CCCCCccceeEEEEEEEEcCC------CCeEEEEEEEcCCCcEEEEeEecCCcee
Confidence            468999999999999999966432 122479999999999999973      67999999999 9999999999999999


Q ss_pred             eec-CCcEEEEEEc-cCCCCCCCCCCCCcceEEEEEcCCHHHHHHHHHHHHHh
Q 028997          146 NLQ-KNSIVAIFHT-SGDDAGGGNNGSAAARTFLIRTKTEEDRNKLATAIQEY  196 (200)
Q Consensus       146 ~~~-k~~v~~i~~~-~~~~~~e~~~~~~~~~~~liR~kt~e~A~eL~~~i~e~  196 (200)
                      +.. +....++|.+ .+.+++++     ++++|+|||+++++|++|+++|+++
T Consensus        90 ~~~~~~~~~~~~~~~~d~~~~~~-----k~~~~~irfk~~e~a~~f~~~~~e~  137 (146)
T d1k5db_          90 KPNAGSDRAWVWNTHADFADECP-----KPELLAIRFLNAENAQKFKTKFEEC  137 (146)
T ss_dssp             CBCSSCSSEEEEEEEEECTTSSC-----EEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred             cccCCCceeEEEEecCCCccCCC-----ceEEEEEEECCHHHHHHHHHHHHHH
Confidence            873 3222344443 23322222     7899999999999999999999875

>d1xkea1 b.55.1.3 (A:7-124) Ran-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Ran-binding domain
domain: Ran-binding protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.8e-31  Score=204.36  Aligned_cols=109  Identities=21%  Similarity=0.281  Sum_probs=88.4

Q ss_pred             ceeEEEEceeEEEecCCCCCCCCCcccceeeEEeeeecCCCCCCCCCceEEEEEcc-ccceeeceeeCCCceeee-cCCc
Q 028997           74 IIVVHEVKCKLYVKSSDPADKDTWKDRGTGQLSIKCKEGISKGTKESKPTILVRND-VGRVLLNALLYPGIKTNL-QKNS  151 (200)
Q Consensus        74 E~~vf~~RaKLf~~~~~~~~~~~WkERGvG~Lkil~~k~~~~~t~~~k~RlvmR~D-~gkVlLN~~L~~~m~~~~-~k~~  151 (200)
                      |++||+.|||||++.++   .++|+|||+|+||||+++.      ++++|||||+| +|+||||+.|+++|+++. .++.
T Consensus         1 E~~lf~~raKLy~~~~~---~~~WkerG~G~lkilk~~~------~~~~RlvmR~d~~~kv~lN~~i~~~~~~~~~~~~~   71 (118)
T d1xkea1           1 EKVLYSQRVKLFRFDAE---VSQWKERGLGNLKILKNEV------NGKLRMLMRREQVLKVCANHWITTTMNLKPLSGSD   71 (118)
T ss_dssp             EEEEEEEEEEEEEEETT---TTEEEEEEEEEEEEEEETT------SSCEEEEEEETTTTEEEEEEECCTTSCEEECTTCS
T ss_pred             CccEEEEEEEEEEEeCC---CCChhHhceeEEEEEEeCC------CCcEEEEEEECCCCcEEEEeEEcCCCccccccCCc
Confidence            68999999999965432   1589999999999999973      67999999999 999999999999999987 3222


Q ss_pred             EEEEEEccCCCCCCCCCCCCcceEEEEEcCCHHHHHHHHHHHHHh
Q 028997          152 IVAIFHTSGDDAGGGNNGSAAARTFLIRTKTEEDRNKLATAIQEY  196 (200)
Q Consensus       152 v~~i~~~~~~~~~e~~~~~~~~~~~liR~kt~e~A~eL~~~i~e~  196 (200)
                      ..++|...+.+++++     ++++|+|||+++++|++|+++|+++
T Consensus        72 ~~~~~~~~d~~~~~~-----~~~~~~lrfk~~e~a~~f~~~~~ea  111 (118)
T d1xkea1          72 RAWMWLASDFSDGDA-----KLEQLAAKFKTPELAEEFKQKFEEC  111 (118)
T ss_dssp             SCEEEEEEECSSSCS-----EEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred             eEEEEeccccCCCCC-----ceEEEEEEECCHHHHHHHHHHHHHH
Confidence            224444444333332     7899999999999999999999986

>d2crfa1 b.55.1.3 (A:8-144) Ran binding protein 3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Ran-binding domain
domain: Ran binding protein 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.5e-30  Score=202.14  Aligned_cols=116  Identities=21%  Similarity=0.373  Sum_probs=91.0

Q ss_pred             cccCCCCceeEEEEceeEEEecCCCCCCCCCcccceeeEEeeeecCCCCCCCCCceEEEEEcc-ccceeeceeeCCCcee
Q 028997           67 KKSEERGIIVVHEVKCKLYVKSSDPADKDTWKDRGTGQLSIKCKEGISKGTKESKPTILVRND-VGRVLLNALLYPGIKT  145 (200)
Q Consensus        67 ~~~GEEdE~~vf~~RaKLf~~~~~~~~~~~WkERGvG~Lkil~~k~~~~~t~~~k~RlvmR~D-~gkVlLN~~L~~~m~~  145 (200)
                      ..+|||+|++||++|||||.+...   .++|+|||+|+||||+++..+  +.++++|||||+| +||||||+.|+++|++
T Consensus        12 v~TGEE~E~~l~~~r~KL~~fd~~---~~~WkerG~G~lkl~~~k~~~--~~t~k~RlvmR~~~~~kv~lN~~i~~~m~~   86 (137)
T d2crfa1          12 VITGEEAESNVLQMQCKLFVFDKT---SQSWVERGRGLLRLNDMASTD--DGTLQSRLVMRTQGSLRLILNTKLWAQMQI   86 (137)
T ss_dssp             TSCCCCCCEEEEEEEEEEEEEETT---TTEEEEEEEEEEEEEEEECSS--SCSEEEEEEEEESSSCCEEEEEECCTTCCE
T ss_pred             ccCCccCcEEEEEEEEEEEEEeCC---CCcCcccCEEEEEEEEEeccC--CCCceEEEEEEECCCCeEEEeCEECCCCcc
Confidence            358999999999999999965321   269999999999999987432  3356999999999 9999999999999999


Q ss_pred             ee-cCCcEEEEEEccCCCCCCCCCCCCcceEEEEEcCCHHHHHHHHHHHHHhC
Q 028997          146 NL-QKNSIVAIFHTSGDDAGGGNNGSAAARTFLIRTKTEEDRNKLATAIQEYA  197 (200)
Q Consensus       146 ~~-~k~~v~~i~~~~~~~~~e~~~~~~~~~~~liR~kt~e~A~eL~~~i~e~~  197 (200)
                      +. ++++++|.+.  ++ +++      ++.+|+|||+++ ++.+|+++|.+++
T Consensus        87 ~~~~~k~v~~~~~--d~-~~~------~~~~~li~~~~~-~~~~l~~~i~e~i  129 (137)
T d2crfa1          87 DKASEKSIHITAM--DT-EDQ------GVKVFLISASSK-DTGQLYAALHHRI  129 (137)
T ss_dssp             ECCSSSEEEEEEE--BS-SSC------CEEEEEEECCHH-HHHHHHHHHHHHH
T ss_pred             ccCCCCEEEEEee--cC-CCC------ceEEEEEEECCH-HHHHHHHHHHHHH
Confidence            98 4556654433  32 121      578999999865 5677788887764

>d1evha_ b.55.1.4 (A:) Enabled {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Enabled/VASP homology 1 domain (EVH1 domain)
domain: Enabled
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=5.4e-24  Score=161.20  Aligned_cols=102  Identities=16%  Similarity=0.270  Sum_probs=84.7

Q ss_pred             CceeEEEEceeEEEecCCCCCCCCCccccee----eEEeeeecCCCCCCCCCceEEEEEcc-ccceeeceeeCCCceeee
Q 028997           73 GIIVVHEVKCKLYVKSSDPADKDTWKDRGTG----QLSIKCKEGISKGTKESKPTILVRND-VGRVLLNALLYPGIKTNL  147 (200)
Q Consensus        73 dE~~vf~~RaKLf~~~~~~~~~~~WkERGvG----~Lkil~~k~~~~~t~~~k~RlvmR~D-~gkVlLN~~L~~~m~~~~  147 (200)
                      +|++||++|||||.+.++   +++|++||+|    .++|+++++      ++++|||||++ +++||||+.|+++|+|+.
T Consensus         1 nE~~~~~~rAkl~~~d~~---~~~Wk~rG~g~~~~~v~il~~~~------~~~~Rivmrr~~~~kv~~N~~i~~~~~y~~   71 (111)
T d1evha_           1 SEQSICQARAAVMVYDDA---NKKWVPAGGSTGFSRVHIYHHTG------NNTFRVVGRKIQDHQVVINCAIPKGLKYNQ   71 (111)
T ss_dssp             CEEEEEEEEEEEEEEETT---TTEEEEGGGCCSCEEEEEEEETT------TTEEEEEEEETTTCCEEEEEEECTTCCCBC
T ss_pred             CcceeEEEEEEEEEEeCC---CCcccccCCCceeEEEEEEEeCC------CCEEEEEEEEccCCeEEEEEeccCccceec
Confidence            578999999999955432   2589999865    599999973      67999999999 999999999999999988


Q ss_pred             cCCcEEEEEEccCCCCCCCCCCCCcceEEEEEcCCHHHHHHHHHHHHHhC
Q 028997          148 QKNSIVAIFHTSGDDAGGGNNGSAAARTFLIRTKTEEDRNKLATAIQEYA  197 (200)
Q Consensus       148 ~k~~v~~i~~~~~~~~~e~~~~~~~~~~~liR~kt~e~A~eL~~~i~e~~  197 (200)
                      ..... ..|...             ..+|.|||+++++|++|+++|++..
T Consensus        72 ~~~~~-~~w~~~-------------~~~fglrF~~~e~A~~F~~~v~~a~  107 (111)
T d1evha_          72 ATQTF-HQWRDA-------------RQVYGLNFGSKEDANVFASAMMHAL  107 (111)
T ss_dssp             CSSSE-EEEECS-------------SCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred             CCCce-EEEecC-------------ceEEEEEcCCHHHHHHHHHHHHHHH
Confidence            66555 345421             2589999999999999999998763

>d1egxa_ b.55.1.4 (A:) Vasodilator-stimulated phosphoprotein (VASP) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Enabled/VASP homology 1 domain (EVH1 domain)
domain: Vasodilator-stimulated phosphoprotein (VASP)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.7e-23  Score=159.30  Aligned_cols=102  Identities=16%  Similarity=0.272  Sum_probs=84.8

Q ss_pred             CceeEEEEceeEEEecCCCCCCCCCccccee-----eEEeeeecCCCCCCCCCceEEEEEcc-c-cceeeceeeCCCcee
Q 028997           73 GIIVVHEVKCKLYVKSSDPADKDTWKDRGTG-----QLSIKCKEGISKGTKESKPTILVRND-V-GRVLLNALLYPGIKT  145 (200)
Q Consensus        73 dE~~vf~~RaKLf~~~~~~~~~~~WkERGvG-----~Lkil~~k~~~~~t~~~k~RlvmR~D-~-gkVlLN~~L~~~m~~  145 (200)
                      +|++||++|||||.+.++   .++|++||+|     .++|++++.      ++++|||||++ + ++||||+.|+++|+|
T Consensus         2 nE~~l~~~rAkl~~~d~~---tk~WkerG~G~~~~~~vkil~~~~------~~~~Riv~rr~~~~~kv~lN~~I~~~~~~   72 (115)
T d1egxa_           2 SETVICSSRATVMLYDDG---NKRWLPAGTGPQAFSRVQIYHNPT------ANSFRVVGRKMQPDQQVVINCAIVRGVKY   72 (115)
T ss_dssp             CSCEEEEEEEECBEECTT---TSSCCBSSCSCCCCEEEEEEEETT------TTEEEEEEEESSTTCCEEEEEEECSSCCC
T ss_pred             CcceeEEEEEEEEEEeCC---CCcceeCCCCcEEEEEEEEEecCC------CceEEEEEEEEcCCCEEEEEeEECCCcce
Confidence            578999999999965442   2699999999     689999974      67999999998 6 899999999999999


Q ss_pred             eecCCcEEEEEEccCCCCCCCCCCCCcceEEEEEcCCHHHHHHHHHHHHHhC
Q 028997          146 NLQKNSIVAIFHTSGDDAGGGNNGSAAARTFLIRTKTEEDRNKLATAIQEYA  197 (200)
Q Consensus       146 ~~~k~~v~~i~~~~~~~~~e~~~~~~~~~~~liR~kt~e~A~eL~~~i~e~~  197 (200)
                      +....+.. .|.  +           ....|.|||+++++|++|+++|+++.
T Consensus        73 ~~~~~~f~-~w~--~-----------~~~~f~lrF~~~e~A~~F~~~~~~a~  110 (115)
T d1egxa_          73 NQATPNFH-QWR--D-----------ARQVWGLNFGSKEDAAQFAAGMASAL  110 (115)
T ss_dssp             CCSSTTEE-EEE--S-----------SSCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred             EEcCCcce-eec--c-----------cceEEEEEeCCHHHHHHHHHHHHHHH
Confidence            98655542 332  1           23689999999999999999998763

>d1mkea1 b.55.1.4 (A:31-144) Actin regulatory protein WASP {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Enabled/VASP homology 1 domain (EVH1 domain)
domain: Actin regulatory protein WASP
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.99  E-value=3.5e-09  Score=79.33  Aligned_cols=98  Identities=16%  Similarity=0.308  Sum_probs=81.0

Q ss_pred             eeEEEEceeEEEecCCCCCCCCCcccceeeEEeeeecCCCCCCCCCceEEEEEcc-ccceeeceeeCCCceeeecCCcEE
Q 028997           75 IVVHEVKCKLYVKSSDPADKDTWKDRGTGQLSIKCKEGISKGTKESKPTILVRND-VGRVLLNALLYPGIKTNLQKNSIV  153 (200)
Q Consensus        75 ~~vf~~RaKLf~~~~~~~~~~~WkERGvG~Lkil~~k~~~~~t~~~k~RlvmR~D-~gkVlLN~~L~~~m~~~~~k~~v~  153 (200)
                      .++....++||...++    +.|..+|.|.+-+.++.     + ...++|+++.. .++||+|..|+++|+|+.....+ 
T Consensus        11 ~~latavv~lY~~~~~----~~W~~~~tG~v~~v~d~-----~-~~~~~l~v~d~~~~~vi~e~eI~~~~~Y~k~~~~F-   79 (114)
T d1mkea1          11 VTMSSAVVQLYAADRN----CMWSKKCSGVACLVKDN-----P-QRSYFLRIFDIKDGKLLWEQELYNNFVYNSPRGYF-   79 (114)
T ss_dssp             EEEEEEEEEEEEEETT----TEEEEEEEEEEEEEEET-----T-TTEEEEEEECSSSCSEEEEEECCSSCCCBCSSSSE-
T ss_pred             ceeeeEEEEEEEECCC----CeEEECCceEEEEEEEC-----C-CCeEEEEEEECCCCeEEEEEEccCCcEEeccCCeE-
Confidence            5788999999975443    47999999999999975     3 45799999998 99999999999999999877765 


Q ss_pred             EEEEccCCCCCCCCCCCCcceEEEEEcCCHHHHHHHHHHHHHh
Q 028997          154 AIFHTSGDDAGGGNNGSAAARTFLIRTKTEEDRNKLATAIQEY  196 (200)
Q Consensus       154 ~i~~~~~~~~~e~~~~~~~~~~~liR~kt~e~A~eL~~~i~e~  196 (200)
                      ..|.  ++           -..+-|.|.++++|.+|.+.|.+.
T Consensus        80 h~~~--~~-----------~~~~GL~F~~~~eA~~f~~~i~~~  109 (114)
T d1mkea1          80 HTFA--GD-----------TCQVALNFANEEEAKKFRKAVTDL  109 (114)
T ss_dssp             EEEE--CS-----------SSEEEEEESSHHHHHHHHHHHHHH
T ss_pred             EEEE--cC-----------CceEEEeeCCHHHHHHHHHHHHHH
Confidence            2332  21           147999999999999999999875

>d1i2ha_ b.55.1.4 (A:) Homer {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Enabled/VASP homology 1 domain (EVH1 domain)
domain: Homer
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.34  E-value=3.1e-06  Score=65.65  Aligned_cols=105  Identities=12%  Similarity=0.254  Sum_probs=76.7

Q ss_pred             CceeEEEEceeEEEecCCCCCCCCCcccceeeEEeeeecCCCCCCCCCceEEEEEccccceeeceeeCCCceeeecCCcE
Q 028997           73 GIIVVHEVKCKLYVKSSDPADKDTWKDRGTGQLSIKCKEGISKGTKESKPTILVRNDVGRVLLNALLYPGIKTNLQKNSI  152 (200)
Q Consensus        73 dE~~vf~~RaKLf~~~~~~~~~~~WkERGvG~Lkil~~k~~~~~t~~~k~RlvmR~D~gkVlLN~~L~~~m~~~~~k~~v  152 (200)
                      +|..||++||-+|...+.  .++.|.--|-|-.+|..--.    +...-+|||=++| .+|+||..|.++|+|+......
T Consensus         4 ~E~~i~~~rA~V~~~d~~--tkk~W~P~s~~~s~V~i~~~----~~~~~yRIvg~~d-~~vvin~~i~~~l~y~kas~~F   76 (145)
T d1i2ha_           4 GEQPIFSTRAHVFQIDPN--TKKNWVPTSKHAVTVSYFYD----STRNVYRIISLDG-SKAIINSTITPNMTFTKTSQKF   76 (145)
T ss_dssp             SSCCSEEEEEEEEEECTT--SSCCSEESCSSCEEEEEEEE----TTTTEEEEEEEET-TEEEEEEECCTTCCEEEEETTE
T ss_pred             cccceeEEEEEEEEECCC--CCceeEECCCCceEEEEEEc----CCCceEEEEEecC-CeEEEEeeccCCceeeecccce
Confidence            578899999999954332  23579887777666554221    2255899999876 5899999999999998744444


Q ss_pred             EEEEEccCCCCCCCCCCCCcceEEEEEcCCHHHHHHHHHHHHHh
Q 028997          153 VAIFHTSGDDAGGGNNGSAAARTFLIRTKTEEDRNKLATAIQEY  196 (200)
Q Consensus       153 ~~i~~~~~~~~~e~~~~~~~~~~~liR~kt~e~A~eL~~~i~e~  196 (200)
                      . -|....           .-..|=|-|.++++|..|..+|++.
T Consensus        77 h-qWrd~r-----------~~~V~GL~F~s~~da~~F~~~~~~a  108 (145)
T d1i2ha_          77 G-QWADSR-----------ANTVYGLGFSSEHHLSKFAEKFQEF  108 (145)
T ss_dssp             E-EEEETT-----------TTEEEEEEESSHHHHHHHHHHHHHH
T ss_pred             e-Eeeecc-----------ccceeecccCCHHHHHHHHHHHHHH
Confidence            2 223221           2267999999999999999999875

>d1xoda1 b.55.1.4 (A:10-123) Sprouty-related, EVH1 domain-containing protein 1, Spred-1 {Western clawed frog (Xenopus tropicalis) [TaxId: 8364]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Enabled/VASP homology 1 domain (EVH1 domain)
domain: Sprouty-related, EVH1 domain-containing protein 1, Spred-1
species: Western clawed frog (Xenopus tropicalis) [TaxId: 8364]

Probab=97.97  E-value=3.6e-05  Score=57.33  Aligned_cols=103  Identities=13%  Similarity=0.184  Sum_probs=69.2

Q ss_pred             EEEEceeEEEecCCCCCCCCCcccceeeE---EeeeecCCCCCCCCCceEEEEEcc-ccceeeceeeCCCceeeecCCcE
Q 028997           77 VHEVKCKLYVKSSDPADKDTWKDRGTGQL---SIKCKEGISKGTKESKPTILVRND-VGRVLLNALLYPGIKTNLQKNSI  152 (200)
Q Consensus        77 vf~~RaKLf~~~~~~~~~~~WkERGvG~L---kil~~k~~~~~t~~~k~RlvmR~D-~gkVlLN~~L~~~m~~~~~k~~v  152 (200)
                      +..+||.+|.-.+.   ++.|.--|-|-|   .|-+---..+ ....-+||+.|+= -+.|++|..|+++|+|+......
T Consensus         2 ~~~~RA~Vm~~dd~---tk~W~P~gggglS~v~v~~~~~~~~-~~~~~Y~I~g~~l~d~~vvi~~~l~~~~~Y~~~~~~F   77 (114)
T d1xoda1           2 YARVRAVVMTRDDS---SGGWLQLGGGGLSSVTVSKTLQPGD-SGGTEFLVHGERLRDKTVVLECVLRRDLVYNKVTPTF   77 (114)
T ss_dssp             CEEEEEEEEEECSS---SSCEEEGGGCCCEEEEEECC----------CCEEEEEETTTCCEEEEEECCTTCEEEEEETTE
T ss_pred             cceEEEEEEEEeCC---CCceEecCCCCcceEEEEEEecCCC-CCCceEEEEEEEccCCcEEEEEEecCCCEEecCCCce
Confidence            56789999944332   257987765432   2221000001 1134689999998 89999999999999999866654


Q ss_pred             EEEEEccCCCCCCCCCCCCcceEEEEEcCCHHHHHHHHHHHHHhC
Q 028997          153 VAIFHTSGDDAGGGNNGSAAARTFLIRTKTEEDRNKLATAIQEYA  197 (200)
Q Consensus       153 ~~i~~~~~~~~~e~~~~~~~~~~~liR~kt~e~A~eL~~~i~e~~  197 (200)
                      - .|.. +           . ..|=|-|.++++|..|.++|++.+
T Consensus        78 H-~w~~-~-----------~-~~~GL~F~se~eA~~F~~~v~~al  108 (114)
T d1xoda1          78 H-HWRI-G-----------D-KKFGLTFQSPADARAFDRGIRRAI  108 (114)
T ss_dssp             E-EEEE-T-----------T-EEEEEEESSHHHHHHHHHHHHHHH
T ss_pred             E-EEEe-C-----------C-EEEEEecCCHHHHHHHHHHHHHHH
Confidence            2 2332 1           1 589999999999999999998753