Citrus Sinensis ID: 029000

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200
Protein Sequence
MIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGRHVLSLHYLTLGRDDFRIFPLRWQRHKIKFGRLKCIFYLSIYKFISNLFSVLNKSLAAVISRLQMTML
Secondary Structure (PSIPRED)
cEEEEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccEEEEccccccccccccEEEEEEEEccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccEEEEEEEEEEccccccccccccccccEEEEEccccccEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccEEEEEEcccccccccHHHHcHHHHHHHHHHHHHHHHHHHcccccHHHHccccccccccccEEEccccccccccccEEEEEcEEEcccccHHHHHHHHHHHHHHHHHHHHHccccccccEEEccccccEEEEEEEEccccccccccEEcccHHHHEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
mipwklhvtgklfhsglphkainPLELAMEALKVIQTRfykdfpphpkeqvygfetpstmkptqwsypggginqipgectvsgdvrltpfynVTDVMKRLQEYVDDINENIekldtrgpvskyvlpdenirgrhVLSLHYLTlgrddfrifplrWQRHKIKFGRLKCIFYLSIYKFISNLFSVLNKSLAAVISRLQMTML
Flexible Loop (DISEMBL)
mipwklhvtgklfhsglphKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINEniekldtrgpvskyvlpdenirgrhVLSLHYLTLGRDDFRIFPLRWQRHKIKFGRLKCIFYLSIYKFISNLFSVLNKSLAAVISRLQMTML
Low Complexity Region (SEG)
MIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGRHVLSLHYLTLGRDDFRIFPLRWQRHKIKFGRLKCIFYLSIYKFISNLFSVLNKSLAAVISRLQMTML
Disordered region (IsUnstruct)
***WKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFET****KPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGRHVLSLHYLTLGRDDFRIFPLRWQRHKIKFGRLKCIFYLSIYKFISNLFSVLNKSLAAVISR******
Disordered Region (DISOPRED)
MIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGRHVLSLHYLTLGRDDFRIFPLRWQRHKIKFGRLKCIFYLSIYKFISNLFSVLNKSLAAVISRLQMTML
Disordered Region (DISEMBL)
MIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGRHVLSLHYLTLGRDDFRIFPLRWQRHKIKFGRLKCIFYLSIYKFISNLFSVLNKSLAAVISRLQMTML
Disordered Region (DISPRO)
MIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGRHVLSLHYLTLGRDDFRIFPLRWQRHKIKFGRLKCIFYLSIYKFISNLFSVLNKSLAAVISRLQM***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVxxxxxxxxxxxxxxxxxxxxxGPVSKYVLPDENIRGRHVLSLHYLTLGRDDFRIFPLRWQRHKIKFGRLKCIFYLSIYKFISNLFSVLNKSLAAVISRLQMTML
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	200	2.2.26 [Sep-21-2011]
P54638	447	Acetylornithine deacetyla	yes	no	0.615	0.275	0.512	5e-32
Q8PAU0	376	Succinyl-diaminopimelate	yes	no	0.43	0.228	0.316	0.0002
Q4USS4	376	Succinyl-diaminopimelate	yes	no	0.43	0.228	0.316	0.0002
B0RW53	376	Succinyl-diaminopimelate	yes	no	0.43	0.228	0.316	0.0002
Q5H1C8	376	Succinyl-diaminopimelate	yes	no	0.45	0.239	0.303	0.0002
Q2P492	376	Succinyl-diaminopimelate	yes	no	0.45	0.239	0.303	0.0002
B2SQY5	376	Succinyl-diaminopimelate	yes	no	0.45	0.239	0.303	0.0003
Q8PMJ5	376	Succinyl-diaminopimelate	yes	no	0.45	0.239	0.303	0.0003
Q3BVJ3	376	Succinyl-diaminopimelate	yes	no	0.45	0.239	0.303	0.0003

>sp|P54638|ARGE_DICDI Acetylornithine deacetylase OS=Dictyostelium discoideum GN=argE PE=1 SV=2

 Score =  137 bits (345), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 63/123 (51%), Positives = 81/123 (65%)

Query: 4   WKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPT 63
           W L   GK  HS +P++ +N +EL  EAL  IQ RFY DF PHPKE  Y F+  STMKPT
Sbjct: 216 WNLTAHGKNMHSAMPYRTVNSVELVNEALAEIQRRFYIDFKPHPKEAEYKFDCSSTMKPT 275

Query: 64  QWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKY 123
            W    G  N IPGE T+ GD+RLTPFY++ ++  +++ Y+ DIN NI +L  RGP SKY
Sbjct: 276 LWKPIAGSYNTIPGESTICGDIRLTPFYDMKEMRAKVEGYIKDINANITELRNRGPYSKY 335

Query: 124 VLP 126
            +P
Sbjct: 336 DVP 338

Dictyostelium discoideum (taxid: 44689)
EC: 3EC: .EC: 5EC: .EC: 1EC: .EC: 1EC: 6

>sp|Q8PAU0|DAPE_XANCP Succinyl-diaminopimelate desuccinylase OS=Xanthomonas campestris pv. campestris (strain ATCC 33913 / NCPPB 528 / LMG 568) GN=dapE PE=3 SV=2

 Score = 45.8 bits (107), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 12/98 (12%)

Query: 5   KLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFET--PSTMKP 62
            L V G   H   PHKA NP+ LA  AL  +  R + D          GFE+  P++++ 
Sbjct: 185 NLIVKGVQGHVAYPHKARNPIHLAAPALAELIARQWDD----------GFESFPPTSLQI 234

Query: 63  TQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRL 100
           +      G  N IPGE  V+ ++R TP +N   + + +
Sbjct: 235 SNIHAGTGANNVIPGELQVAFNLRYTPHWNAETLEREI 272

Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls.

Xanthomonas campestris pv. campestris (strain ATCC 33913 / NCPPB 528 / LMG 568) (taxid: 190485)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 8

>sp|Q4USS4|DAPE_XANC8 Succinyl-diaminopimelate desuccinylase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=dapE PE=3 SV=2

 Score = 45.8 bits (107), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 12/98 (12%)

Query: 5   KLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFET--PSTMKP 62
            L V G   H   PHKA NP+ LA  AL  +  R + D          GFE+  P++++ 
Sbjct: 185 NLIVKGVQGHVAYPHKARNPIHLAAPALAELIARQWDD----------GFESFPPTSLQI 234

Query: 63  TQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRL 100
           +      G  N IPGE  V+ ++R TP +N   + + +
Sbjct: 235 SNIHAGTGANNVIPGELQVAFNLRYTPHWNAETLEREI 272

Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls.

Xanthomonas campestris pv. campestris (strain 8004) (taxid: 314565)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 8

>sp|B0RW53|DAPE_XANCB Succinyl-diaminopimelate desuccinylase OS=Xanthomonas campestris pv. campestris (strain B100) GN=dapE PE=3 SV=1

 Score = 45.8 bits (107), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 12/98 (12%)

Query: 5   KLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFET--PSTMKP 62
            L V G   H   PHKA NP+ LA  AL  +  R + D          GFE+  P++++ 
Sbjct: 185 NLIVKGVQGHVAYPHKARNPIHLAAPALAELIARQWDD----------GFESFPPTSLQI 234

Query: 63  TQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRL 100
           +      G  N IPGE  V+ ++R TP +N   + + +
Sbjct: 235 SNIHAGTGANNVIPGELQVAFNLRYTPHWNAETLEREI 272

Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls.

Xanthomonas campestris pv. campestris (strain B100) (taxid: 509169)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 8

>sp|Q5H1C8|DAPE_XANOR Succinyl-diaminopimelate desuccinylase OS=Xanthomonas oryzae pv. oryzae (strain KACC10331 / KXO85) GN=dapE PE=3 SV=2

 Score = 45.8 bits (107), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 12/102 (11%)

Query: 6   LHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFET--PSTMKPT 63
           L V G   H   PHKA NP+ LA  AL  +  R + D          GFE+  P++++ +
Sbjct: 185 LTVKGVQGHVAYPHKARNPIHLAAPALAELVARQWDD----------GFESFPPTSLQVS 234

Query: 64  QWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVD 105
                 G  N IPGE  V+ ++R TP ++   +   +   +D
Sbjct: 235 NIHAGTGANNVIPGELQVAFNLRYTPHWDAPRLEAEITALLD 276

Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls.

Xanthomonas oryzae pv. oryzae (strain KACC10331 / KXO85) (taxid: 291331)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 8

>sp|Q2P492|DAPE_XANOM Succinyl-diaminopimelate desuccinylase OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=dapE PE=3 SV=1

 Score = 45.8 bits (107), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 12/102 (11%)

Query: 6   LHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFET--PSTMKPT 63
           L V G   H   PHKA NP+ LA  AL  +  R + D          GFE+  P++++ +
Sbjct: 185 LTVKGVQGHVAYPHKARNPIHLAAPALAELVARQWDD----------GFESFPPTSLQVS 234

Query: 64  QWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVD 105
                 G  N IPGE  V+ ++R TP ++   +   +   +D
Sbjct: 235 NIHAGTGANNVIPGELQVAFNLRYTPHWDAPRLEAEITALLD 276

Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls.

Xanthomonas oryzae pv. oryzae (strain MAFF 311018) (taxid: 342109)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 8

>sp|B2SQY5|DAPE_XANOP Succinyl-diaminopimelate desuccinylase OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=dapE PE=3 SV=1

 Score = 45.4 bits (106), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 12/102 (11%)

Query: 6   LHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFET--PSTMKPT 63
           L V G   H   PHKA NP+ LA  AL  +  R + D          GFE+  P++++ +
Sbjct: 185 LTVKGVQGHVAYPHKARNPIHLAAPALAELVARQWDD----------GFESFPPTSLQVS 234

Query: 64  QWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVD 105
                 G  N IPGE  V+ ++R TP ++   +   +   +D
Sbjct: 235 NIHAGTGANNVIPGELQVAFNLRYTPHWDAPRLETEITALLD 276

Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls.

Xanthomonas oryzae pv. oryzae (strain PXO99A) (taxid: 360094)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 8

>sp|Q8PMJ5|DAPE_XANAC Succinyl-diaminopimelate desuccinylase OS=Xanthomonas axonopodis pv. citri (strain 306) GN=dapE PE=3 SV=1

 Score = 45.4 bits (106), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 12/102 (11%)

Query: 6   LHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFET--PSTMKPT 63
           L V G   H   PHKA NP+ LA  AL  +  R + D          GFE+  P++++ +
Sbjct: 185 LTVKGVQGHVAYPHKARNPIHLAAPALAELVARQWDD----------GFESFPPTSLQLS 234

Query: 64  QWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVD 105
                 G  N IPGE  V+ ++R TP ++   +   +   +D
Sbjct: 235 NIHAGTGANNVIPGELQVAFNLRYTPHWDAPRLEAEITALLD 276

Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls.

Xanthomonas axonopodis pv. citri (strain 306) (taxid: 190486)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 8

>sp|Q3BVJ3|DAPE_XANC5 Succinyl-diaminopimelate desuccinylase OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=dapE PE=3 SV=1

 Score = 45.1 bits (105), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 12/102 (11%)

Query: 6   LHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFET--PSTMKPT 63
           L V G   H   PHKA NP+ LA  AL  +  R + D          GFE+  P++++ +
Sbjct: 185 LTVKGVQGHVAYPHKARNPIHLAAPALAELVARQWDD----------GFESFPPTSLQLS 234

Query: 64  QWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVD 105
                 G  N IPGE  V+ ++R TP ++   +   +   +D
Sbjct: 235 NIHAGTGANNVIPGELQVAFNLRYTPHWDAPRLEAEITALLD 276

Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls.

Xanthomonas campestris pv. vesicatoria (strain 85-10) (taxid: 316273)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	200
356541483	450	PREDICTED: acetylornithine deacetylase-l	0.69	0.306	0.847	2e-66
356541481	438	PREDICTED: acetylornithine deacetylase-l	0.69	0.315	0.847	2e-66
229463815	330	N2-acetylornithine deacetylase [Populus	0.72	0.436	0.805	7e-66
224126285	435	predicted protein [Populus trichocarpa]	0.72	0.331	0.805	8e-66
229463817	330	N2-acetylornithine deacetylase [Populus	0.72	0.436	0.798	5e-65
224138900	435	predicted protein [Populus trichocarpa]	0.72	0.331	0.798	5e-65
89257686	437	acetylornithine deacetylase, putative [B	0.72	0.329	0.798	9e-65
255557587	435	acetylornithine deacetylase, putative [R	0.72	0.331	0.805	1e-64
297742105	340	unnamed protein product [Vitis vinifera]	0.69	0.405	0.818	2e-64
357482393	439	N-acetylornithine deacetylase-like prote	0.72	0.328	0.791	2e-64

>gi|356541483|ref|XP_003539205.1| PREDICTED: acetylornithine deacetylase-like isoform 2 [Glycine max]

 Score =  257 bits (656), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 117/138 (84%), Positives = 127/138 (92%)

Query: 1   MIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTM 60
           MIPWKLHVTG+LFHSGL HKAIN LELAM+ALK IQ RFY DFPPHP+EQVYGF TPST+
Sbjct: 222 MIPWKLHVTGRLFHSGLAHKAINALELAMDALKEIQLRFYSDFPPHPQEQVYGFATPSTL 281

Query: 61  KPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPV 120
           KPTQWSYPGGGINQIPGECT+SGDVRLTPFYNV DVMK+LQEYVDDINE+ +KL++RGPV
Sbjct: 282 KPTQWSYPGGGINQIPGECTISGDVRLTPFYNVKDVMKKLQEYVDDINESAQKLESRGPV 341

Query: 121 SKYVLPDENIRGRHVLSL 138
           SKYVLPDENIRGR  LS 
Sbjct: 342 SKYVLPDENIRGRLTLSF 359

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356541481|ref|XP_003539204.1| PREDICTED: acetylornithine deacetylase-like isoform 1 [Glycine max]

 Score =  257 bits (656), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 117/138 (84%), Positives = 127/138 (92%)

Query: 1   MIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTM 60
           MIPWKLHVTG+LFHSGL HKAIN LELAM+ALK IQ RFY DFPPHP+EQVYGF TPST+
Sbjct: 210 MIPWKLHVTGRLFHSGLAHKAINALELAMDALKEIQLRFYSDFPPHPQEQVYGFATPSTL 269

Query: 61  KPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPV 120
           KPTQWSYPGGGINQIPGECT+SGDVRLTPFYNV DVMK+LQEYVDDINE+ +KL++RGPV
Sbjct: 270 KPTQWSYPGGGINQIPGECTISGDVRLTPFYNVKDVMKKLQEYVDDINESAQKLESRGPV 329

Query: 121 SKYVLPDENIRGRHVLSL 138
           SKYVLPDENIRGR  LS 
Sbjct: 330 SKYVLPDENIRGRLTLSF 347

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|229463815|gb|ACQ66333.1| N2-acetylornithine deacetylase [Populus maximowiczii x Populus nigra]

 Score =  255 bits (651), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 116/144 (80%), Positives = 128/144 (88%)

Query: 1   MIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTM 60
           MIPWKLH TGKLFHSGLPHKAINPLEL MEALK IQ+RFYKDFPPH +EQVYGF TPSTM
Sbjct: 112 MIPWKLHFTGKLFHSGLPHKAINPLELGMEALKEIQSRFYKDFPPHKEEQVYGFATPSTM 171

Query: 61  KPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPV 120
           KPTQWSYPGGGINQIP ECT+SGDVRLTPFY+V D M +LQEYVD+INENIEKLDTRGPV
Sbjct: 172 KPTQWSYPGGGINQIPAECTISGDVRLTPFYSVEDAMDKLQEYVDEINENIEKLDTRGPV 231

Query: 121 SKYVLPDENIRGRHVLSLHYLTLG 144
           SKYVLP+EN+RG   ++ +  + G
Sbjct: 232 SKYVLPEENLRGSLTVTFNEASSG 255

Source: Populus maximowiczii x Populus nigra

Species: Populus maximowiczii x Populus nigra

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224126285|ref|XP_002329517.1| predicted protein [Populus trichocarpa] gi|222870226|gb|EEF07357.1| predicted protein [Populus trichocarpa]

 Score =  255 bits (651), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 116/144 (80%), Positives = 129/144 (89%)

Query: 1   MIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTM 60
           MIPWKLH TGKLFHSGLPHKAINPLEL MEALK IQ+RFY+DFPPH +EQVYGF TPSTM
Sbjct: 207 MIPWKLHFTGKLFHSGLPHKAINPLELGMEALKEIQSRFYEDFPPHKEEQVYGFATPSTM 266

Query: 61  KPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPV 120
           KPTQWSYPGGGINQIP ECT+SGDVRLTPFY+V DVM +LQEYVD+INENIEKLDTRGPV
Sbjct: 267 KPTQWSYPGGGINQIPAECTISGDVRLTPFYSVKDVMDKLQEYVDEINENIEKLDTRGPV 326

Query: 121 SKYVLPDENIRGRHVLSLHYLTLG 144
           SKYVLP+EN+RG   ++ +  + G
Sbjct: 327 SKYVLPEENLRGSLTVTFNEASSG 350

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|229463817|gb|ACQ66334.1| N2-acetylornithine deacetylase [Populus maximowiczii x Populus nigra]

 Score =  252 bits (644), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 115/144 (79%), Positives = 128/144 (88%)

Query: 1   MIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTM 60
           MIPWKLHVTGKLFHSGLPHKAINPLEL MEALK IQ+RFY+DFPPH +EQVYGF TPSTM
Sbjct: 112 MIPWKLHVTGKLFHSGLPHKAINPLELGMEALKEIQSRFYRDFPPHKEEQVYGFATPSTM 171

Query: 61  KPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPV 120
           KPTQWSYPGGGINQIP ECT+SGDVRLTPFY+V DVM +LQ++VDDINENIEKL TRGPV
Sbjct: 172 KPTQWSYPGGGINQIPAECTISGDVRLTPFYSVEDVMSKLQKHVDDINENIEKLGTRGPV 231

Query: 121 SKYVLPDENIRGRHVLSLHYLTLG 144
           SKYVLP+EN+RG   ++    + G
Sbjct: 232 SKYVLPEENLRGSLAVTFDEASSG 255

Source: Populus maximowiczii x Populus nigra

Species: Populus maximowiczii x Populus nigra

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138900|ref|XP_002326718.1| predicted protein [Populus trichocarpa] gi|222834040|gb|EEE72517.1| predicted protein [Populus trichocarpa]

 Score =  252 bits (644), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 115/144 (79%), Positives = 128/144 (88%)

Query: 1   MIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTM 60
           MIPWKLHVTGKLFHSGLPHKAINPLEL MEALK IQ+RFY+DFPPH +EQVYGF TPSTM
Sbjct: 207 MIPWKLHVTGKLFHSGLPHKAINPLELGMEALKEIQSRFYRDFPPHKEEQVYGFATPSTM 266

Query: 61  KPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPV 120
           KPTQWSYPGGGINQIP ECT+SGDVRLTPFY+V DVM +LQ++VDDINENIEKL TRGPV
Sbjct: 267 KPTQWSYPGGGINQIPAECTISGDVRLTPFYSVEDVMSKLQKHVDDINENIEKLGTRGPV 326

Query: 121 SKYVLPDENIRGRHVLSLHYLTLG 144
           SKYVLP+EN+RG   ++    + G
Sbjct: 327 SKYVLPEENLRGSLAVTFDEASSG 350

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|89257686|gb|ABD65173.1| acetylornithine deacetylase, putative [Brassica oleracea]

 Score =  251 bits (642), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 115/144 (79%), Positives = 127/144 (88%)

Query: 1   MIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTM 60
           MIPWKLHVTGKLFHSGL HKAIN +EL ME LK IQ+RFY+DFPPH +E+VYGF TPSTM
Sbjct: 208 MIPWKLHVTGKLFHSGLAHKAINAMELGMEGLKEIQSRFYRDFPPHEQEKVYGFATPSTM 267

Query: 61  KPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPV 120
           KPTQWSYPGGGINQIPG+CTVSGDVRLTPFY+V +VMK+LQEYVDDIN NIEKL TRGPV
Sbjct: 268 KPTQWSYPGGGINQIPGDCTVSGDVRLTPFYDVKEVMKKLQEYVDDINTNIEKLSTRGPV 327

Query: 121 SKYVLPDENIRGRHVLSLHYLTLG 144
           SKYVLP+EN+RGR  LS    + G
Sbjct: 328 SKYVLPEENLRGRLTLSFDEASAG 351

Source: Brassica oleracea

Species: Brassica oleracea

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255557587|ref|XP_002519823.1| acetylornithine deacetylase, putative [Ricinus communis] gi|223540869|gb|EEF42427.1| acetylornithine deacetylase, putative [Ricinus communis]

 Score =  251 bits (641), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 116/144 (80%), Positives = 125/144 (86%)

Query: 1   MIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTM 60
           MIPWKLHVTGKLFHSGL HKAIN LELAM+AL+ +Q+RFYKDFPPHP+EQVYGF T STM
Sbjct: 207 MIPWKLHVTGKLFHSGLAHKAINALELAMDALQEMQSRFYKDFPPHPREQVYGFATASTM 266

Query: 61  KPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPV 120
           KPTQWSYPGGGINQIPGECT+SGDVRLTPFYN+ DV   LQEYVDDINENIEKL TRGPV
Sbjct: 267 KPTQWSYPGGGINQIPGECTISGDVRLTPFYNLVDVKNMLQEYVDDINENIEKLGTRGPV 326

Query: 121 SKYVLPDENIRGRHVLSLHYLTLG 144
           SKYVLPDEN+RG   L+      G
Sbjct: 327 SKYVLPDENLRGSITLTFEEAMSG 350

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742105|emb|CBI33892.3| unnamed protein product [Vitis vinifera]

 Score =  251 bits (640), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 113/138 (81%), Positives = 126/138 (91%)

Query: 1   MIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTM 60
           MIPWKL VTGKLFHSGLPHKAINPLELAM+A+K IQ RFY+DFPPHPKEQ+YGF TPSTM
Sbjct: 112 MIPWKLRVTGKLFHSGLPHKAINPLELAMDAVKEIQLRFYRDFPPHPKEQIYGFATPSTM 171

Query: 61  KPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPV 120
           KPTQW YPGGGINQIP ECT+SGDVRLTPFYNV DVMK+LQEYVDDIN +IE+L++RGPV
Sbjct: 172 KPTQWHYPGGGINQIPAECTISGDVRLTPFYNVIDVMKKLQEYVDDINNHIERLESRGPV 231

Query: 121 SKYVLPDENIRGRHVLSL 138
           SKYVLPDE++RG   +S 
Sbjct: 232 SKYVLPDEDLRGSLTISF 249

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357482393|ref|XP_003611482.1| N-acetylornithine deacetylase-like protein [Medicago truncatula] gi|355512817|gb|AES94440.1| N-acetylornithine deacetylase-like protein [Medicago truncatula]

 Score =  250 bits (639), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 114/144 (79%), Positives = 126/144 (87%)

Query: 1   MIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTM 60
           MIPWKLHVTGK+FHSGL HKAINPLELAM+A+K IQ +FY DFPPHP+EQVYGF TPSTM
Sbjct: 211 MIPWKLHVTGKMFHSGLAHKAINPLELAMDAIKEIQLKFYNDFPPHPQEQVYGFATPSTM 270

Query: 61  KPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPV 120
           KPTQWSYPGGGINQIPGECT+SGDVRLTPFYNV DVMK+LQEYVD+INENI KL++RGPV
Sbjct: 271 KPTQWSYPGGGINQIPGECTISGDVRLTPFYNVKDVMKKLQEYVDEINENIHKLESRGPV 330

Query: 121 SKYVLPDENIRGRHVLSLHYLTLG 144
           SKY L DEN+RG   L+      G
Sbjct: 331 SKYALSDENLRGSLTLTFDEANSG 354

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	200
DICTYBASE|DDB_G0267380	447	argE "acetylornithine deacetyl	0.615	0.275	0.512	2.6e-31

DICTYBASE|DDB_G0267380 argE "acetylornithine deacetylase" [Dictyostelium discoideum (taxid:44689)]

 Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
 Identities = 63/123 (51%), Positives = 81/123 (65%)

Query:     4 WKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPT 63
             W L   GK  HS +P++ +N +EL  EAL  IQ RFY DF PHPKE  Y F+  STMKPT
Sbjct:   216 WNLTAHGKNMHSAMPYRTVNSVELVNEALAEIQRRFYIDFKPHPKEAEYKFDCSSTMKPT 275

Query:    64 QWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKY 123
              W    G  N IPGE T+ GD+RLTPFY++ ++  +++ Y+ DIN NI +L  RGP SKY
Sbjct:   276 LWKPIAGSYNTIPGESTICGDIRLTPFYDMKEMRAKVEGYIKDINANITELRNRGPYSKY 335

Query:   124 VLP 126
              +P
Sbjct:   336 DVP 338


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.141   0.440    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      200       200   0.00087  111 3  11 22  0.43    32
                                                     31  0.45    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  600 (64 KB)
  Total size of DFA:  181 KB (2104 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.47u 0.06s 20.53t   Elapsed:  00:00:13
  Total cpu time:  20.47u 0.06s 20.53t   Elapsed:  00:00:13
  Start:  Fri May 10 02:01:08 2013   End:  Fri May 10 02:01:21 2013

GO:0005615 "extracellular space" evidence=IDA

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0008777 "acetylornithine deacetylase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0008652 "cellular amino acid biosynthetic process" evidence=IEA

GO:0006526 "arginine biosynthetic process" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	200
cd08012	423	cd08012, M20_ArgE-related, M20 Peptidases with sim	7e-88
pfam07687	107	pfam07687, M20_dimer, Peptidase dimerisation domai	4e-16
cd08659	365	cd08659, M20_ArgE_DapE_like, Peptidase M20 acetylo	7e-15
PRK08651	394	PRK08651, PRK08651, succinyl-diaminopimelate desuc	1e-10
PRK13983	400	PRK13983, PRK13983, diaminopimelate aminotransfera	3e-09
COG0624	409	COG0624, ArgE, Acetylornithine deacetylase/Succiny	2e-08
TIGR01910	375	TIGR01910, DapE-ArgE, acetylornithine deacetylase	2e-08
PRK08588	377	PRK08588, PRK08588, succinyl-diaminopimelate desuc	2e-08
cd05650	393	cd05650, M20_ArgE_DapE_like1, M20 Peptidases with	2e-08
cd03894	372	cd03894, M20_ArgE, M20 Peptidase acetylornithine d	1e-07
cd08011	390	cd08011, M20_ArgE_DapE_like6, M20 Peptidases with	1e-07
cd05649	376	cd05649, M20_ArgE_DapE_like4, M20 Peptidases with	2e-06
PRK07522	385	PRK07522, PRK07522, acetylornithine deacetylase; P	1e-05
cd03891	366	cd03891, M20_DapE_proteobac, M20 Peptidase proteob	3e-05
TIGR01891	363	TIGR01891, amidohydrolases, amidohydrolase	8e-05
TIGR01246	370	TIGR01246, dapE_proteo, succinyl-diaminopimelate d	1e-04
pfam01546	310	pfam01546, Peptidase_M20, Peptidase family M20/M25	2e-04
PRK13009	375	PRK13009, PRK13009, succinyl-diaminopimelate desuc	5e-04
cd08018	365	cd08018, M20_Acy1_amhX_like, M20 Peptidase Aminoac	9e-04
cd05675	426	cd05675, M20_yscS_like, M20 Peptidase, carboxypept	0.002
cd05652	335	cd05652, M20_ArgE_DapE_like_fungal, M20 Peptidases	0.002

>gnl|CDD|193560 cd08012, M20_ArgE-related, M20 Peptidases with simlarity to acetylornithine deacetylases

 Score =  264 bits (676), Expect = 7e-88
 Identities = 108/144 (75%), Positives = 120/144 (83%), Gaps = 2/144 (1%)

Query: 1   MIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTM 60
           +I WKL  TGKLFHSGLPHKAIN LELAMEAL  IQ RFY+DFPPHPKE+ YGF T STM
Sbjct: 196 VITWKLKATGKLFHSGLPHKAINALELAMEALAEIQKRFYEDFPPHPKEERYGFATSSTM 255

Query: 61  KPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPV 120
           KPTQWSYPGGGINQIPGE T+SGD+RLTPFY+V +V K+L++YV DIN NIE+L TRGPV
Sbjct: 256 KPTQWSYPGGGINQIPGEATISGDIRLTPFYDVAEVQKKLEKYVADINANIERLPTRGPV 315

Query: 121 SKYVLPDENIRGRHVLSLHYLTLG 144
           SKYVLPDE  RGR  LSL +   G
Sbjct: 316 SKYVLPDEGGRGR--LSLTFGEEG 337

Peptidase M20 family, acetylornithine deacetylase (ArgE, Acetylornithinase, AO, N2-acetyl-L-ornithine amidohydrolase, EC 3.5.1.16)-related subfamily. Proteins in this subfamily have not yet been characterized, but have been predicted to have deacetylase activity. ArgE catalyzes the conversion of N-acetylornithine to ornithine, which can then be incorporated into the urea cycle for the final stage of arginine synthesis. The substrate specificity of ArgE is quite broad; several alpha-N-acyl-L-amino acids can be hydrolyzed, including alpha-N-acetylmethionine and alpha-N-formylmethionine. ArgE shares significant sequence homology and biochemical features, and possibly a common origin, with glutamate carboxypeptidase (CPG2) and succinyl-diaminopimelate desuccinylase (DapE), and aminoacylase I (ACY1), having all metal ligand binding residues conserved. Length = 423

>gnl|CDD|219515 pfam07687, M20_dimer, Peptidase dimerisation domain

 Score = 70.4 bits (173), Expect = 4e-16
 Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 14/111 (12%)

Query: 4   WKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPT 63
            KL V GK  HSG P K +N ++L    L  +         P     +      +T+  T
Sbjct: 9   GKLTVKGKAGHSGAPGKGVNAIKLLARLLAEL---------PAEYGDIGFDFPRTTLNIT 59

Query: 64  QWSYPGGG--INQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIE 112
                 GG   N IP E     D+RL P  ++ +++K ++E ++      E
Sbjct: 60  GIE---GGTARNVIPAEAEAKFDIRLLPGEDLEELLKEIEEILEKEAPEGE 107

This domain consists of 4 beta strands and two alpha helices which make up the dimerisation surface of members of the M20 family of peptidases. This family includes a range of zinc metallopeptidases belonging to several families in the peptidase classification. Family M20 are Glutamate carboxypeptidases. Peptidase family M25 contains X-His dipeptidases. Length = 107

>gnl|CDD|193570 cd08659, M20_ArgE_DapE_like, Peptidase M20 acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase (ArgE/DapE)-like

 Score = 71.5 bits (176), Expect = 7e-15
 Identities = 27/130 (20%), Positives = 52/130 (40%), Gaps = 11/130 (8%)

Query: 4   WKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPT 63
            ++  TGK  H   P   +N +    + +  ++   +     HP   + G   P T+   
Sbjct: 173 LRVTATGKAAHGSRPELGVNAIYALAKVIGALEELPFALPAEHP---LLG---PPTLNVG 226

Query: 64  QWSYPGG-GINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDIN--ENIEKLDTRGPV 120
                GG  +N +P E T+  D+RL P  +  +V+  L+  +  +    ++E   +  P 
Sbjct: 227 VIK--GGEQVNVVPDEATLELDIRLVPGEDPDEVLAELEALLAQVPPPADVEVDLSVPPP 284

Query: 121 SKYVLPDENI 130
                PD  +
Sbjct: 285 PVVTDPDSPL 294

Peptidase M20 acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase (ArgE/DapE) like family of enzymes catalyze analogous reactions and share a common activator, the metal ion (usually Co2+ or Zn2+). ArgE catalyzes a broad range of substrates, including N-acetylornithine, alpha-N-acetylmethionine and alpha-N-formylmethionine, while DapE catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelate (L,L-SDAP) to L,L-diaminopimelate and succinate. Proteins in this family are mostly bacterial and have been inferred by homology as being related to both, ArgE and DapE. This family also includes N-acetyl-L-citrulline deacetylase (ACDase; acetylcitrulline deacetylase), a unique, novel enzyme found in Xanthomonas campestris, a plant pathogen, in which N-acetyl-L-ornithine is the substrate for transcarbamoylation reaction, and the product is N-acetyl-L-citrulline. Thus, in the arginine biosynthesis pathway, ACDase subsequently catalyzes the hydrolysis of N-acetyl-L-citrulline to acetate and L-citrulline. Length = 365

>gnl|CDD|236323 PRK08651, PRK08651, succinyl-diaminopimelate desuccinylase; Reviewed

 Score = 59.6 bits (145), Expect = 1e-10
 Identities = 27/108 (25%), Positives = 42/108 (38%), Gaps = 11/108 (10%)

Query: 5   KLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPT- 63
            + V GK  H+  P   IN  E A +  + +++              Y ++     KPT 
Sbjct: 188 VVKVYGKQAHASTPWLGINAFEAAAKIAERLKSSLSTIKSK------YEYDDERGAKPTV 241

Query: 64  QWSYP----GGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDI 107
               P    G   N +PG C  S D RL P     +V   L+  +D++
Sbjct: 242 TLGGPTVEGGTKTNIVPGYCAFSIDRRLIPEETAEEVRDELEALLDEV 289

Length = 394

>gnl|CDD|237578 PRK13983, PRK13983, diaminopimelate aminotransferase; Provisional

 Score = 54.9 bits (133), Expect = 3e-09
 Identities = 32/110 (29%), Positives = 49/110 (44%), Gaps = 6/110 (5%)

Query: 2   IPW-KLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETP-ST 59
           I W K  V GK  H+  P   IN    A +    +    ++ F      +   F+ P ST
Sbjct: 196 ILWLKFTVKGKQCHASTPENGINAHRAAADFALELDEALHEKFN----AKDPLFDPPYST 251

Query: 60  MKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINE 109
            +PT+       IN IPG      D R+ P Y++ +V+K ++E  D+  E
Sbjct: 252 FEPTKKEANVDNINTIPGRDVFYFDCRVLPDYDLDEVLKDIKEIADEFEE 301

Length = 400

>gnl|CDD|223697 COG0624, ArgE, Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism]

 Score = 52.9 bits (127), Expect = 2e-08
 Identities = 28/111 (25%), Positives = 44/111 (39%), Gaps = 10/111 (9%)

Query: 5   KLHVTGKLFHSG--LPHKAINPLELAMEALK----VIQTRFYKDFPPHPKEQVYGFETPS 58
           ++ V GK  H+    P    NP+  A+EAL      +     + F       V       
Sbjct: 201 EVTVKGKAGHASTTPPDLGRNPIHAAIEALAELIEELGDLAGEGFDGPLGLNV----GLI 256

Query: 59  TMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINE 109
              P      G  +N IPGE   + D+RL P  ++ DV++ L+  +  I  
Sbjct: 257 LAGPGASVNGGDKVNVIPGEAEATVDIRLLPGEDLDDVLEELEAELRAIAP 307

Length = 409

>gnl|CDD|233632 TIGR01910, DapE-ArgE, acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase

 Score = 52.8 bits (127), Expect = 2e-08
 Identities = 34/138 (24%), Positives = 51/138 (36%), Gaps = 27/138 (19%)

Query: 5   KLHVTGKLFHSGLPHKAINPLELAM-------EALKVIQTRFYKDFPPHPKEQVYGFETP 57
           KL V GK  H+  P   +N +           E  + I  R    F P P         P
Sbjct: 183 KLRVKGKQAHASFPQFGVNAIMKLAKLITELNELEEHIYARNSYGFIPGPI-----TFNP 237

Query: 58  STMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDIN-------EN 110
             +K   W      +N +P  C  S DVR+ P  N+ +V + +++ V  ++       EN
Sbjct: 238 GVIKGGDW------VNSVPDYCEFSIDVRIIPEENLDEVKQIIEDVVKALSKSDGWLYEN 291

Query: 111 IEKLDTRGPVSKYVLPDE 128
              +   GP      PD 
Sbjct: 292 EPVVKWSGPN--ETPPDS 307

This group of sequences contains annotations for both acetylornithine deacetylase and succinyl-diaminopimelate desuccinylase, but does not contain any members with experimental characterization. Bacillus, Staphylococcus and Sulfolobus species contain multiple hits to this subfamily and each may have a separate activity. Determining which is which must await further laboratory research [Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 375

>gnl|CDD|181490 PRK08588, PRK08588, succinyl-diaminopimelate desuccinylase; Reviewed

 Score = 52.6 bits (127), Expect = 2e-08
 Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 11/104 (10%)

Query: 9   TGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYP 68
           TGK  HS +P   +N ++  +E     +  ++     H      G     T   T  +  
Sbjct: 181 TGKAAHSSMPELGVNAIDPLLEFYNEQKE-YFDSIKKH--NPYLG---GLTHVVTIIN-- 232

Query: 69  GGG--INQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINEN 110
            GG  +N +P E  +  ++R  P Y+   V+  LQE ++++N+N
Sbjct: 233 -GGEQVNSVPDEAELEFNIRTIPEYDNDQVISLLQEIINEVNQN 275

Length = 377

>gnl|CDD|193527 cd05650, M20_ArgE_DapE_like1, M20 Peptidases with similarity to acetylornithine deacetylases and succinyl-diaminopimelate desuccinylases

 Score = 52.6 bits (127), Expect = 2e-08
 Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 8/111 (7%)

Query: 2   IPW-KLHVTGKLFHSGLPHKAINPLELAME-ALKVIQTRFYKDFPPHPKEQVYGFETP-S 58
           I W K+ V GK  H+  P + IN    A +  L +   R   +           F+ P S
Sbjct: 192 ILWLKVTVKGKQCHASTPEEGINAHRAASKLILAL--DRLLHEKFNKRDPL---FDPPYS 246

Query: 59  TMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINE 109
           T +PT+       IN IPG      D R+ P Y++ +V++ ++E   ++ E
Sbjct: 247 TFEPTKKEANVDNINTIPGRDVFYFDCRILPEYSLDEVLETVREIAKEVEE 297

Peptidase M20 family, Uncharacterized protein subfamily with similarity to acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase (ArgE/DapE) subfamily. ArgE/DapE enzymes catalyze analogous reactions and share a common activator, the metal ion (usually Co2+ or Zn2+). ArgE catalyzes a broad range of substrates, including N-acetylornithine, alpha-N-acetylmethionine and alpha-N-formylmethionine, while DapE catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelate (L,L-SDAP) to L,L-diaminopimelate and succinate. Proteins in this subfamily are mostly bacterial and archaeal, and have been inferred by homology as being related to both ArgE and DapE. Length = 393

>gnl|CDD|193514 cd03894, M20_ArgE, M20 Peptidase acetylornithine deacetylase

 Score = 50.6 bits (122), Expect = 1e-07
 Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 14/110 (12%)

Query: 4   WKLHVTGKLFHSGLPHKAINPLELAME---ALKVIQTRFYKDFPPHPKEQVYGFETP-ST 59
           +++ V G+  HS LP   +N +E A      L+ +     ++ P         F+ P ST
Sbjct: 173 YRVRVHGRAGHSSLPPLGVNAIEAAARLIGKLRELADELAENGPDDS-----FFDVPYST 227

Query: 60  MKPTQWSYPGGGI--NQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDI 107
           +         GG   N IPG+C +  + R  P  +  +++ RL+ Y  ++
Sbjct: 228 LNVGVIH---GGTALNIIPGQCELDFEFRPLPGMDPEELLARLRAYAAEL 274

Peptidase M20 family, acetylornithine deacetylase (ArgE, Acetylornithinase, AO, N2-acetyl-L-ornithine amidohydrolase, EC 3.5.1.16) subfamily. ArgE catalyzes the conversion of N-acetylornithine to ornithine, which can then be incorporated into the urea cycle for the final stage of arginine synthesis. The substrate specificity of ArgE is quite broad; several alpha-N-acyl-L-amino acids can be hydrolyzed, including alpha-N-acetylmethionine and alpha-N-formylmethionine. ArgE shares significant sequence homology and biochemical features, and possibly a common origin, with glutamate carboxypeptidase (CPG2) and succinyl-diaminopimelate desuccinylase (DapE), and aminoacylase I (ACY1), having all metal ligand binding residues conserved. Length = 372

>gnl|CDD|193559 cd08011, M20_ArgE_DapE_like6, M20 Peptidases with similarity to acetylornithine deacetylases and succinyl-diaminopimelate desuccinylases

 Score = 50.4 bits (121), Expect = 1e-07
 Identities = 31/114 (27%), Positives = 46/114 (40%), Gaps = 10/114 (8%)

Query: 5   KLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPP--HPKEQVYGFETPSTMKP 62
           ++ V GK  H   P   IN    A E   VI     +   P    ++  Y +E   T  P
Sbjct: 188 EVRVKGKQAHGSTPWLGIN----AFEKASVIALELQEALKPRLSSRKSKYEYEDERTANP 243

Query: 63  TQ----WSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIE 112
           T      +   G  N +PG    S D RL P  N+ +V K + + ++   E I+
Sbjct: 244 TVTLGGEAEGTGKTNIVPGYFRFSIDRRLIPEENLEEVRKEIVDLLERAEEGIK 297

Peptidase M20 family, Uncharacterized protein subfamily with similarity to acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase (ArgE/DapE) subfamily. This group includes the hypothetical protein ygeY from Escherichia coli, a putative deacetylase, but many in this subfamily are classified as unassigned peptidases. ArgE/DapE enzymes catalyze analogous reactions and share a common activator, the metal ion (usually Co2+ or Zn2+). ArgE catalyzes a broad range of substrates, including N-acetylornithine, alpha-N-acetylmethionine and alpha-N-formylmethionine, while DapE catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelate (L,L-SDAP) to L,L-diaminopimelate and succinate. Proteins in this subfamily are mostly archaeal, and have been inferred by homology as being related to both ArgE and DapE. Length = 390

>gnl|CDD|193526 cd05649, M20_ArgE_DapE_like4, M20 Peptidases with similarity to acetylornithine deacetylases and succinyl-diaminopimelate desuccinylases

 Score = 46.9 bits (112), Expect = 2e-06
 Identities = 17/110 (15%), Positives = 36/110 (32%), Gaps = 15/110 (13%)

Query: 4   WKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPT 63
            ++   G+  HS  P + +N +      +  ++     + P HP           T+  T
Sbjct: 170 IRVETKGRSAHSSAPERGVNAIYKMARIITELRE---LNPPEHP------VLGKGTLVVT 220

Query: 64  QWSYPGGGINQIPGECTVSGDVRLTPFYNVTDV------MKRLQEYVDDI 107
                    + +P  C ++ D RL        V      +K ++     +
Sbjct: 221 DIFSSPPSASAVPDYCRITLDRRLLVGETRESVLAQIRDLKAVKGLEAKV 270

Peptidase M20 family, Uncharacterized protein subfamily with similarity to acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase (ArgE/DapE) subfamily. This group includes the hypothetical protein ygeY from Escherichia coli, a putative deacetylase, but many in this subfamily are classified as unassigned peptidases. ArgE/DapE enzymes catalyze analogous reactions and share a common activator, the metal ion (usually Co2+ or Zn2+). ArgE catalyzes a broad range of substrates, including N-acetylornithine, alpha-N-acetylmethionine and alpha-N-formylmethionine, while DapE catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelate (L,L-SDAP) to L,L-diaminopimelate and succinate. Proteins in this subfamily are mostly bacterial and archaeal, and have been inferred by homology as being related to both ArgE and DapE. Length = 376

>gnl|CDD|236039 PRK07522, PRK07522, acetylornithine deacetylase; Provisional

 Score = 44.8 bits (107), Expect = 1e-05
 Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 14/108 (12%)

Query: 5   KLHVTGKLFHSGLPHKAINPLELA---MEALKVIQTRFYKDFPPHPKEQVYGFETP-STM 60
           +  V G+  HS L  + +N +E A   +  L+ +  R     P         F+ P ST+
Sbjct: 181 RCTVRGRAAHSSLAPQGVNAIEYAARLIAHLRDLADRLAAPGPFDA-----LFDPPYSTL 235

Query: 61  KPTQWSYPGGGI--NQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDD 106
              Q     GG   N +P EC    + R  P  +   ++ R++ Y + 
Sbjct: 236 ---QTGTIQGGTALNIVPAECEFDFEFRNLPGDDPEAILARIRAYAEA 280

Length = 385

>gnl|CDD|193511 cd03891, M20_DapE_proteobac, M20 Peptidase proteobacterial DapE encoded N-succinyl-L,L-diaminopimelic acid desuccinylase

 Score = 43.2 bits (103), Expect = 3e-05
 Identities = 28/113 (24%), Positives = 44/113 (38%), Gaps = 18/113 (15%)

Query: 5   KLHVTGKLFHSGLPHKAINPLELAMEAL-KVIQTRF---YKDFPPHPKEQVYGFETPSTM 60
           KL V GK  H   PH A NP+ L   AL ++    +    + FPP    Q+   +     
Sbjct: 180 KLTVKGKQGHVAYPHLADNPIHLLAPALAELAAIVWDEGNEFFPP-TSLQITNIDA---- 234

Query: 61  KPTQWSYPGGGI-NQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIE 112
                   G G  N IPGE     ++R +  +    +  R++  +D    +  
Sbjct: 235 --------GNGATNVIPGELEAMFNIRFSTEHTAESLKARIEAILDKHGLDYT 279

Peptidase M20 family, proteobacterial DapE encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE; aspartyl dipeptidase; succinyl-diaminopimelate desuccinylase) subfamily. DapE catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelate (L,L-SDAP) to L,L-diaminopimelate and succinate. It has been shown that DapE is essential for cell growth and proliferation. DapEs have been purified from Escherichia coli and Haemophilus influenzae, while the genes that encode for DapEs have been sequenced from several bacterial sources such as Corynebacterium glutamicum, Helicobacter pylori, Neisseria meningitidis and Mycobacterium tuberculosis. DapE is a small, dimeric enzyme that requires two zinc atoms per molecule for full enzymatic activity. All of the amino acids that function as metal binding ligands are strictly conserved in DapE. Length = 366

>gnl|CDD|233621 TIGR01891, amidohydrolases, amidohydrolase

 Score = 41.9 bits (99), Expect = 8e-05
 Identities = 25/108 (23%), Positives = 47/108 (43%), Gaps = 16/108 (14%)

Query: 5   KLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQ 64
           ++ + GK  H+  PH   + L+ A + +  +Q    ++  P     V       T+   +
Sbjct: 174 EVTIHGKGAHAARPHLGRDALDAAAQLVVALQQIVSRNVDPSRPAVV-------TVGIIE 226

Query: 65  WSYPGGGINQIPGECTVSGDVR-LTPFYNVTDVMKRLQEYVDDINENI 111
               GG  N IP + ++SG VR L P     +V  ++ + ++ I E  
Sbjct: 227 ---AGGAPNVIPDKASMSGTVRSLDP-----EVRDQIIDRIERIVEGA 266

This model represents a subfamily of amidohydrolases which are a subset of those sequences detected by pfam01546. Included within this group are hydrolases of hippurate (N-benzylglycine), indoleacetic acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino acids and aminobenzoylglutamate. These hydrolases are of the carboxypeptidase-type, most likely utilizing a zinc ion in the active site [Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 363

>gnl|CDD|162269 TIGR01246, dapE_proteo, succinyl-diaminopimelate desuccinylase, proteobacterial clade

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 27/117 (23%), Positives = 49/117 (41%), Gaps = 18/117 (15%)

Query: 2   IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKD----FPPHPKEQVYGFETP 57
           I   L + G   H   PH A NP+  A  AL  +    + +    FP            P
Sbjct: 178 ITGNLTIKGIQGHVAYPHLANNPIHKAAPALAELTAIKWDEGNEFFP------------P 225

Query: 58  STMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVD--DINENIE 112
           ++++ T      G  N IPGE  V  ++R +   +   + +R++  +D   ++ ++E
Sbjct: 226 TSLQITNIHAGTGANNVIPGELYVQFNLRFSTEVSDEILKQRVEAILDQHGLDYDLE 282

This model describes a proteobacterial subset of succinyl-diaminopimelate desuccinylases. An experimentally confirmed Gram-positive lineage succinyl-diaminopimelate desuccinylase has been described for Corynebacterium glutamicum , and a neighbor-joining tree shows the seed members, SP:Q59284, and putative archaeal members such as TrEMBL:O58003 in a single clade. However, the archaeal members differ substantially, share a number of motifs with acetylornithine deacetylases rather than succinyl-diaminopimelate desuccinylases, and are not taken as trusted examples of succinyl-diaminopimelate desuccinylases. This model is limited to proteobacterial members for this reason [Amino acid biosynthesis, Aspartate family]. Length = 370

>gnl|CDD|216562 pfam01546, Peptidase_M20, Peptidase family M20/M25/M40

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 21/106 (19%), Positives = 31/106 (29%), Gaps = 8/106 (7%)

Query: 4   WKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPT 63
             L V G   H G P    N + LA  AL ++               V G  T       
Sbjct: 115 LFLTVIGGAGHHGSPPHGGNAIALAAAALILLLQLIVSRGVDPLDPAVVGIGTVGGG--- 171

Query: 64  QWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINE 109
                GG  N +  E       R T    +  +++  +E +     
Sbjct: 172 -----GGSNNNVIPEAAFLRGRRRTLDEELRALVEEEEEAIAAGAA 212

This family includes a range of zinc metallopeptidases belonging to several families in the peptidase classification. Family M20 are Glutamate carboxypeptidases. Peptidase family M25 contains X-His dipeptidases. Length = 310

>gnl|CDD|237265 PRK13009, PRK13009, succinyl-diaminopimelate desuccinylase; Reviewed

 Score = 39.7 bits (94), Expect = 5e-04
 Identities = 29/107 (27%), Positives = 44/107 (41%), Gaps = 20/107 (18%)

Query: 5   KLHVTGKLFHSGLPHKAINPLELAMEAL-KVIQTRF---YKDFPPHPKEQVYGFE--TPS 58
           KL V G   H   PH A NP+ LA  AL ++  T +    + FPP    Q+   +  T +
Sbjct: 184 KLTVKGVQGHVAYPHLADNPIHLAAPALAELAATEWDEGNEFFPP-TSLQITNIDAGTGA 242

Query: 59  TMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVD 105
           T             N IPGE     + R +  +    +  R++  +D
Sbjct: 243 T-------------NVIPGELEAQFNFRFSTEHTAESLKARVEAILD 276

Length = 375

>gnl|CDD|193565 cd08018, M20_Acy1_amhX_like, M20 Peptidase Aminoacylase 1 amhX_like subfamily

 Score = 38.8 bits (91), Expect = 9e-04
 Identities = 30/111 (27%), Positives = 44/111 (39%), Gaps = 22/111 (19%)

Query: 7   HVTGKLFHSGLPHKAINPLELAM---EALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPT 63
            + GK  H   PH  IN +E A    +A+  I           P         P ++K T
Sbjct: 173 TIIGKDAHGARPHLGINAIEAASAIVQAVNSIHLD--------PNI-------PYSVKMT 217

Query: 64  QWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKL 114
           +    GG  N IP + + S D+R     N  + M+ L E V+   E+   L
Sbjct: 218 KIQAGGGSTNIIPDKASFSLDLRAQ--SN--EAMEELIEKVEHAIESAAAL 264

Peptidase M20 family, Uncharacterized subfamily of uncharacterized proteins predicted as putative amidohydrolases, including the amhX gene product from Bacillus subtilis. These are a class of zinc binding homodimeric enzymes involved in hydrolysis of N-acetylated proteins. N-terminal acetylation of proteins is a widespread and highly conserved process that is involved in protection and stability of proteins. Several types of aminoacylases can be distinguished on the basis of substrate specificity. Aminoacylase 1 (ACY1) breaks down cytosolic aliphatic N-acyl-alpha-amino acids (except L-aspartate), especially N-acetyl-methionine and acetyl-glutamate into L-amino acids and an acyl group. However, ACY1 can also catalyze the reverse reaction, the synthesis of acetylated amino acids. ACY1 may also play a role in xenobiotic bioactivation as well as the inter-organ processing of amino acid-conjugated xenobiotic derivatives (S-substituted-N-acetyl-L-cysteine). Length = 365

>gnl|CDD|193550 cd05675, M20_yscS_like, M20 Peptidase, carboxypeptidase yscS-like

 Score = 37.9 bits (89), Expect = 0.002
 Identities = 27/156 (17%), Positives = 43/156 (27%), Gaps = 43/156 (27%)

Query: 4   WKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQV-YGFETPSTMKP 62
            +L  TG   H  +P    N +    EAL  +       FP    E     FE  + +  
Sbjct: 189 LRLTATGPGGHGSMPRPD-NAIYRLAEALARLGA---YRFPVRLTETTRAYFEQLAEITG 244

Query: 63  TQWSYP--------------------------------------GGGINQIPGECTVSGD 84
                                                       G   N IP E T + D
Sbjct: 245 GPLDAAMKRLAADPLDEAAAALGSADPLLHATLRTTCVPTMLEAGHKENVIPQEATATVD 304

Query: 85  VRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPV 120
            R+ P  +  +V+  L++ + D    +E +      
Sbjct: 305 CRILPGVDEEEVLATLKKLLGDPAVEVELVHRPPAP 340

Peptidase M20 family, yscS (GlyX-carboxypeptidase, CPS1, carboxypeptidase S, carboxypeptidase a, carboxypeptidase yscS, glycine carboxypeptidase)-like subfamily. This group contains proteins that have been uncharacterized to date with similarity to vacuolar proteins involved in nitrogen metabolism which are essential for use of certain peptides that are sole nitrogen sources. YscS releases a C-terminal amino acid from a peptide that has glycine as the penultimate residue. It is synthesized as one polypeptide chain precursor which yields two active precursor molecules after carbohydrate modification in the secretory pathway. The proteolytically unprocessed forms are associated with the membrane, whereas the mature forms of the enzyme are soluble. Enzymes in this subfamily may also cleave intracellularly generated peptides in order to recycle amino acids for protein synthesis. Length = 426

>gnl|CDD|193529 cd05652, M20_ArgE_DapE_like_fungal, M20 Peptidases with similarity to acetylornithine deacetylases and succinyl-diaminopimelate desuccinylases

 Score = 37.6 bits (88), Expect = 0.002
 Identities = 27/115 (23%), Positives = 42/115 (36%), Gaps = 23/115 (20%)

Query: 5   KLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQ 64
            +   GK  HSG P   I+ +E  +EAL  ++          P  ++ G   P+T+    
Sbjct: 165 NVTAKGKAAHSGYPELGISAIEKLLEALAKLRDA------DLPSSELLG---PTTLNIGL 215

Query: 65  WSYPGGGI--NQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTR 117
                GG+  N IP     S  +RL       D      E  D +   +  + T 
Sbjct: 216 IE---GGVAANVIPAHAEASVAIRL-----AAD----PPEVKDIVERAVAGILTE 258

Peptidase M20 family, Uncharacterized protein subfamily with similarity to acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase (ArgE/DapE) subfamily. ArgE/DapE enzymes catalyze analogous reactions and share a common activator, the metal ion (usually Co2+ or Zn2+). ArgE catalyzes a broad range of substrates, including N-acetylornithine, alpha-N-acetylmethionine and alpha-N-formylmethionine, while DapE catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelate (L,L-SDAP) to L,L-diaminopimelate and succinate. Proteins in this subfamily are mostly fungal, and have been inferred by homology as being related to both ArgE and DapE. Length = 335

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	200
COG1473	392	AbgB Metal-dependent amidase/aminoacylase/carboxyp	99.86
PLN02693	437	IAA-amino acid hydrolase	99.83
PLN02280	478	IAA-amino acid hydrolase	99.81
PF07687	111	M20_dimer: Peptidase dimerisation domain This fami	99.75
TIGR03176	406	AllC allantoate amidohydrolase. This enzyme cataly	99.73
TIGR01891	363	amidohydrolases amidohydrolase. This model represe	99.71
PRK12891	414	allantoate amidohydrolase; Reviewed	99.71
PRK08588	377	succinyl-diaminopimelate desuccinylase; Reviewed	99.7
PRK06915	422	acetylornithine deacetylase; Validated	99.7
PRK12893	412	allantoate amidohydrolase; Reviewed	99.69
PRK09290	413	allantoate amidohydrolase; Reviewed	99.68
PRK12890	414	allantoate amidohydrolase; Reviewed	99.66
PRK12892	412	allantoate amidohydrolase; Reviewed	99.65
PRK13007	352	succinyl-diaminopimelate desuccinylase; Reviewed	99.65
TIGR01910	375	DapE-ArgE acetylornithine deacetylase or succinyl-	99.65
TIGR01879	401	hydantase amidase, hydantoinase/carbamoylase famil	99.65
PRK08737	364	acetylornithine deacetylase; Provisional	99.64
TIGR01246	370	dapE_proteo succinyl-diaminopimelate desuccinylase	99.64
PRK13009	375	succinyl-diaminopimelate desuccinylase; Reviewed	99.64
PRK08651	394	succinyl-diaminopimelate desuccinylase; Reviewed	99.63
PRK13590	591	putative bifunctional OHCU decarboxylase/allantoat	99.63
PRK13799	591	unknown domain/N-carbamoyl-L-amino acid hydrolase	99.63
TIGR01892	364	AcOrn-deacetyl acetylornithine deacetylase (ArgE).	99.61
PRK13013	427	succinyl-diaminopimelate desuccinylase; Reviewed	99.61
TIGR03526	395	selenium_YgeY putative selenium metabolism hydrola	99.61
PRK05111	383	acetylornithine deacetylase; Provisional	99.6
PRK00466	346	acetyl-lysine deacetylase; Validated	99.6
PRK07522	385	acetylornithine deacetylase; Provisional	99.6
TIGR03320	395	ygeY M20/DapE family protein YgeY. Members of this	99.59
PRK08652	347	acetylornithine deacetylase; Provisional	99.59
PRK06837	427	acetylornithine deacetylase; Provisional	99.58
PRK08262	486	hypothetical protein; Provisional	99.56
TIGR01900	373	dapE-gram_pos succinyl-diaminopimelate desuccinyla	99.55
PRK13983	400	diaminopimelate aminotransferase; Provisional	99.55
PRK13004	399	peptidase; Reviewed	99.53
TIGR01883	361	PepT-like peptidase T-like protein. This model rep	99.53
PRK07338	402	hypothetical protein; Provisional	99.49
TIGR01880	400	Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase	99.47
TIGR01902	336	dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine d	99.45
PRK06133	410	glutamate carboxypeptidase; Reviewed	99.43
TIGR01886	466	dipeptidase dipeptidase PepV. This model represent	99.43
PRK07906	426	hypothetical protein; Provisional	99.43
PRK04443	348	acetyl-lysine deacetylase; Provisional	99.42
PRK13381	404	peptidase T; Provisional	99.4
PRK05469	408	peptidase T; Provisional	99.38
PRK06446	436	hypothetical protein; Provisional	99.37
PRK08596	421	acetylornithine deacetylase; Validated	99.37
PRK06156	520	hypothetical protein; Provisional	99.32
PRK09133	472	hypothetical protein; Provisional	99.32
PRK07473	376	carboxypeptidase; Provisional	99.27
COG0624	409	ArgE Acetylornithine deacetylase/Succinyl-diaminop	99.26
TIGR01882	410	peptidase-T peptidase T. This model represents a t	99.23
PRK07318	466	dipeptidase PepV; Reviewed	99.22
PRK08201	456	hypothetical protein; Provisional	99.21
PRK09104	464	hypothetical protein; Validated	99.18
KOG2275	420	consensus Aminoacylase ACY1 and related metalloexo	99.18
PRK07907	449	hypothetical protein; Provisional	99.13
PRK07205	444	hypothetical protein; Provisional	99.13
PRK07079	469	hypothetical protein; Provisional	99.02
TIGR01893	477	aa-his-dipept aminoacyl-histidine dipeptidase.	99.01
TIGR01887	447	dipeptidaselike dipeptidase, putative. This model	99.01
PRK15026	485	aminoacyl-histidine dipeptidase; Provisional	98.99
PRK08554	438	peptidase; Reviewed	98.13
TIGR01893	477	aa-his-dipept aminoacyl-histidine dipeptidase.	96.38
COG2195	414	PepD Di- and tripeptidases [Amino acid transport a	96.22
PRK15026	485	aminoacyl-histidine dipeptidase; Provisional	95.15
COG4187	553	RocB Arginine degradation protein (predicted deacy	90.32

>COG1473 AbgB Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only]

Probab=99.86  E-value=2.3e-21  Score=166.98  Aligned_cols=154  Identities=19%  Similarity=0.244  Sum_probs=122.2

Q ss_pred             eEEEEEEeeecCCcCCCCCCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCeEEE
Q 029000            2 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTV   81 (200)
Q Consensus         2 ~~~~I~v~G~~gHas~P~~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~a~~   81 (200)
                      -.++|+++|++||++.||.|+||+.+++.++..|+.+..+...+         ..+.++++|.++ +|.+.||||+++++
T Consensus       185 d~~~i~~~GkggH~a~Ph~~~d~i~aa~~~v~~lq~ivsr~~~p---------~~~~vv~vg~~~-aG~a~NVIpd~A~l  254 (392)
T COG1473         185 DEFEITFKGKGGHAAAPHLGIDALVAAAQLVTALQTIVSRNVDP---------LDSAVVTVGKIE-AGTAANVIPDSAEL  254 (392)
T ss_pred             ceEEEEEEeCCcccCCcccccCHHHHHHHHHHHHHHHHhcccCC---------ccCeEEEEEEec-CCCcCCcCCCeeEE
Confidence            36899999999999999999999999999999999876554332         124789999999 89999999999999


Q ss_pred             EEEEeCCCCCCHHHHHHHHHHHHHHHhhc--cc-ccccccCcccccCCCcccccc----c--------eeeecCC-CCcc
Q 029000           82 SGDVRLTPFYNVTDVMKRLQEYVDDINEN--IE-KLDTRGPVSKYVLPDENIRGR----H--------VLSLHYL-TLGR  145 (200)
Q Consensus        82 ~~diR~~~~~~~e~i~~~i~~~~~~~~~~--v~-~~~~~~~~~~~~~~d~~l~~~----~--------~~~~~~~-~~~~  145 (200)
                      .+++|++..+..+++.++++++++..+..  ++ ++. +...++++.+|..+...    .        ....... .+|+
T Consensus       255 ~gtvR~~~~~~~~~~~~~i~~ia~g~a~~~g~~~ei~-~~~~~p~~~Nd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs  333 (392)
T COG1473         255 EGTIRTFSDEVREKLEARIERIAKGIAAAYGAEAEID-YERGYPPVVNDPALTDLLAEAAEEVGGEEVVVVELPPSMAGS  333 (392)
T ss_pred             EEEeecCCHHHHHHHHHHHHHHHHHHHHHhCCeEEEE-ecCCCCCccCCHHHHHHHHHHHHHhccccceecccCCCCCcc
Confidence            99999999999999999999999988765  33 222 33455667777653211    1        1112223 3599


Q ss_pred             ccccccccccccccccccceeEEEEeeHHH
Q 029000          146 DDFRIFPLRWQRHKIKFGRLKCIFYLSIYK  175 (200)
Q Consensus       146 eDf~~~~~~~~~~~~~fG~~~~~~~~~~~~  175 (200)
                      |||++|..+++         ++|||+|..+
T Consensus       334 EDf~~~~~~~P---------g~~~~lG~~~  354 (392)
T COG1473         334 EDFGYYLEKVP---------GAFFFLGTGS  354 (392)
T ss_pred             chHHHHHHhCC---------eeEEEeecCc
Confidence            99999999887         8999999876

>PLN02693 IAA-amino acid hydrolase

Probab=99.83  E-value=6e-20  Score=161.24  Aligned_cols=153  Identities=17%  Similarity=0.245  Sum_probs=111.7

Q ss_pred             eEEEEEEeeecCCcCCCCCCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCeEEE
Q 029000            2 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTV   81 (200)
Q Consensus         2 ~~~~I~v~G~~gHas~P~~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~a~~   81 (200)
                      .+++|+++|+++|+|.|+.|+|||..+++++.+|+++..+...+         ..+.++++|.++ ||...|+||++|++
T Consensus       217 ~~~~i~v~Gk~aHaa~P~~G~nAI~~aa~~i~~l~~~~~~~~~~---------~~~~ti~vg~i~-GG~~~NvVPd~a~~  286 (437)
T PLN02693        217 GVFEAVITGKGGHAAIPQHTIDPVVAASSIVLSLQQLVSRETDP---------LDSKVVTVSKVN-GGNAFNVIPDSITI  286 (437)
T ss_pred             eEEEEEEEcccccCCCCCCCcCHHHHHHHHHHHHHHHhcccCCC---------CCCcEEEEEEEE-cCCCCceECCeEEE
Confidence            47999999999999999999999999999999998863221111         234789999999 99999999999999


Q ss_pred             EEEEeCCCCCCHHHHHHHHHHHHHHHhhc----cc-ccccc-cCcccccCCCccccc-----------cceeeecCCCCc
Q 029000           82 SGDVRLTPFYNVTDVMKRLQEYVDDINEN----IE-KLDTR-GPVSKYVLPDENIRG-----------RHVLSLHYLTLG  144 (200)
Q Consensus        82 ~~diR~~~~~~~e~i~~~i~~~~~~~~~~----v~-~~~~~-~~~~~~~~~d~~l~~-----------~~~~~~~~~~~~  144 (200)
                      ++|+|+.++  .+++.++|+++++..+..    ++ +.... .++.+++.+|+.+..           ..........+|
T Consensus       287 ~~diR~~~~--~~~i~~~i~~i~~~~a~~~g~~~e~~~~~~~~~~~~~~~nd~~l~~~~~~~~~~~~G~~~~~~~~~~~g  364 (437)
T PLN02693        287 GGTLRAFTG--FTQLQQRIKEIITKQAAVHRCNASVNLTPNGREPMPPTVNNMDLYKQFKKVVRDLLGQEAFVEAAPEMG  364 (437)
T ss_pred             EEEEecCCH--HHHHHHHHHHHHHHHHHHhCCcEEEEEeecCccCCCCccCCHHHHHHHHHHHHHhcCCcceeecCCCce
Confidence            999999986  468999999998875432    22 11111 122344556654321           111111234578


Q ss_pred             cccccccccccccccccccceeEEEEeeHHH
Q 029000          145 RDDFRIFPLRWQRHKIKFGRLKCIFYLSIYK  175 (200)
Q Consensus       145 ~eDf~~~~~~~~~~~~~fG~~~~~~~~~~~~  175 (200)
                      +|||++|...++         ++|+|+|..|
T Consensus       365 seDf~~~~~~vP---------~~~~~lG~~~  386 (437)
T PLN02693        365 SEDFSYFAETIP---------GHFSLLGMQD  386 (437)
T ss_pred             echHHHHHHHhh---------hhEEEEecCC
Confidence            999999998765         7889988774

>PLN02280 IAA-amino acid hydrolase

Probab=99.81  E-value=3.3e-19  Score=157.94  Aligned_cols=155  Identities=16%  Similarity=0.286  Sum_probs=113.1

Q ss_pred             eEEEEEEeeecCCcCCCCCCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCeEEE
Q 029000            2 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTV   81 (200)
Q Consensus         2 ~~~~I~v~G~~gHas~P~~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~a~~   81 (200)
                      .+++|+++|+++|+|.|+.|+||+.++++++.+++++..+...+         ..+.++++|.++ ||...|+||++|++
T Consensus       267 ~~~~I~v~Gk~aHas~P~~G~NAI~~aa~li~~l~~l~~r~~~~---------~~~~tvnvg~I~-GG~~~NvIPd~~~l  336 (478)
T PLN02280        267 GFFRAVISGKKGRAGSPHHSVDLILAASAAVISLQGIVSREANP---------LDSQVVSVTTMD-GGNNLDMIPDTVVL  336 (478)
T ss_pred             eEEEEEEECcchhcCCcccCcCHHHHHHHHHHHHHHHHhcccCC---------CCCcEEEEEEEE-ccCCCCEeCCEEEE
Confidence            58999999999999999999999999999999998853221111         134688999999 99999999999999


Q ss_pred             EEEEeCCCCCCHHHHHHHHHHHHHHHhhc--cc-ccc---cccCcccccCCCccccccc----------e-eeecCCCCc
Q 029000           82 SGDVRLTPFYNVTDVMKRLQEYVDDINEN--IE-KLD---TRGPVSKYVLPDENIRGRH----------V-LSLHYLTLG  144 (200)
Q Consensus        82 ~~diR~~~~~~~e~i~~~i~~~~~~~~~~--v~-~~~---~~~~~~~~~~~d~~l~~~~----------~-~~~~~~~~~  144 (200)
                      ++|+|++++++.+++.++|+++++..+..  ++ ++.   ......+++.+++.+....          . .....+.+|
T Consensus       337 ~~diR~~~~e~~e~l~~~I~~~~~~~a~~~g~~~~v~~~~~~~~~~pp~~n~~~l~~~~~~~a~~~~G~~~~~~~~~~~g  416 (478)
T PLN02280        337 GGTFRAFSNTSFYQLLKRIQEVIVEQAGVFRCSATVDFFEKQNTIYPPTVNNDAMYEHVRKVAIDLLGPANFTVVPPMMG  416 (478)
T ss_pred             EEEEecCCHHHHHHHHHHHHHHHHHHHHHhCCeEEEEEeccccCCCCCccCCHHHHHHHHHHHHHhcCccccccCCCCee
Confidence            99999999999999999999999875432  21 111   1112234455565432211          0 011124578


Q ss_pred             cccccccccccccccccccceeEEEEeeHHH
Q 029000          145 RDDFRIFPLRWQRHKIKFGRLKCIFYLSIYK  175 (200)
Q Consensus       145 ~eDf~~~~~~~~~~~~~fG~~~~~~~~~~~~  175 (200)
                      ++||++|...++         ++++|+|.+|
T Consensus       417 ~tD~~~~~~~vP---------~i~~glG~~~  438 (478)
T PLN02280        417 AEDFSFYSQVVP---------AAFYYIGIRN  438 (478)
T ss_pred             echHHHHHhhCC---------EEEEEEeecC
Confidence            999999986554         6778777654

>PF07687 M20_dimer: Peptidase dimerisation domain This family only corresponds to M20 family; InterPro: IPR011650 This domain consists of 4 beta strands and two alpha helices which make up the dimerisation surface of members of the MEROPS peptidase family M20 []

Probab=99.75  E-value=1e-17  Score=119.98  Aligned_cols=103  Identities=25%  Similarity=0.340  Sum_probs=86.5

Q ss_pred             eEEEEEEeeecCCcCCCCCCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCeEEE
Q 029000            2 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTV   81 (200)
Q Consensus         2 ~~~~I~v~G~~gHas~P~~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~a~~   81 (200)
                      ++++|+++|+++|+|.|+.|+||+..+++++..|++...+....    .........+++++.++ +|...|++|++|++
T Consensus         7 ~~~~i~~~G~~~H~s~~~~g~nai~~~~~~l~~l~~~~~~~~~~----~~~~~~~~~~~~~~~i~-gG~~~n~ip~~a~~   81 (111)
T PF07687_consen    7 IWFRITITGKSGHSSRPEKGVNAIEAAARFLNALEELEFEWAFR----PEEFFPGPPTLNIGSIE-GGTAPNVIPDEATL   81 (111)
T ss_dssp             EEEEEEEESBSEETTSGGGSBCHHHHHHHHHHHHHHTTCHBTST----HHHCTCTSEEEEEEEEE-EESSTTEESSEEEE
T ss_pred             EEEEEEEEeeccCCCCccCccCHHHHHHHHHHHHHHhhcccccc----cccccccccceeEeecc-cCCcCCEECCEEEE
Confidence            68999999999999999999999999999999999853221100    00011345899999999 88899999999999


Q ss_pred             EEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 029000           82 SGDVRLTPFYNVTDVMKRLQEYVDDINE  109 (200)
Q Consensus        82 ~~diR~~~~~~~e~i~~~i~~~~~~~~~  109 (200)
                      ++|+|++|.++.+++.+.|++.+++.+.
T Consensus        82 ~~~~R~~p~~~~~~i~~~i~~~~~~~~~  109 (111)
T PF07687_consen   82 TVDIRYPPGEDLEEIKAEIEAAVEKIAK  109 (111)
T ss_dssp             EEEEEESTCHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCcchHHHHHHHHHHHHHHhhh
Confidence            9999999999999999999999988654

This family includes a range of zinc exopeptidases: carboxypeptidases, dipeptidases and specialised aminopeptidases [].; GO: 0016787 hydrolase activity; PDB: 3GB0_A 2F7V_A 1R3N_C 2VL1_D 2V8V_C 1R43_B 2V8G_B 2V8H_D 2V8D_A 3PFE_A ....

>TIGR03176 AllC allantoate amidohydrolase

Probab=99.73  E-value=1.4e-17  Score=145.02  Aligned_cols=150  Identities=17%  Similarity=0.154  Sum_probs=107.0

Q ss_pred             eEEEEEEeeecCCcCCCCC--CCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCeE
Q 029000            2 IPWKLHVTGKLFHSGLPHK--AINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGEC   79 (200)
Q Consensus         2 ~~~~I~v~G~~gHas~P~~--g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~a   79 (200)
                      .+++|+++|+++||+.|+.  ++||+.++++++.++++.. ...           ..+.++++|.|+.+|+..|+||++|
T Consensus       209 ~~~~v~v~GkaaHag~~p~~~r~dAi~aaa~~i~~l~~~~-~~~-----------~~~~~~tvG~I~~gg~~~NvIP~~a  276 (406)
T TIGR03176       209 RRYTVNLKGEANHAGTTPMSYRRDTVYAFSRICTQSIERA-KEI-----------GDPLVLTFGKVEPVPNTVNVVPGET  276 (406)
T ss_pred             eEEEEEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHH-Hhc-----------CCCcEEEEEEEEEcCCceEEECCeE
Confidence            5899999999999998765  4899999999999998752 211           1235889999996688999999999


Q ss_pred             EEEEEEeCCCCCCHHHHHHHHHHHHHHHhhc--cc-ccccccCcccccCCCccccccce--------eeecCCCCccccc
Q 029000           80 TVSGDVRLTPFYNVTDVMKRLQEYVDDINEN--IE-KLDTRGPVSKYVLPDENIRGRHV--------LSLHYLTLGRDDF  148 (200)
Q Consensus        80 ~~~~diR~~~~~~~e~i~~~i~~~~~~~~~~--v~-~~~~~~~~~~~~~~d~~l~~~~~--------~~~~~~~~~~eDf  148 (200)
                      ++++|+|+++.++.+++.++|++.+++.+..  ++ ++..... ..++..|+++...+.        ........|++|+
T Consensus       277 ~~~~DiR~~~~~~~e~v~~~i~~~i~~ia~~~g~~~ei~~~~~-~~p~~~d~~lv~~l~~a~~~~~~~~~~~~sggg~Da  355 (406)
T TIGR03176       277 TFTIDCRHTDAAVLRNFTKELENDMKAIADEMDITIDIDLWMD-EAPVPMNKEIVAIIEQLAKAEKLNYRLMHSGAGHDA  355 (406)
T ss_pred             EEEEEeeCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEEEec-CCCCCCCHHHHHHHHHHHHHcCCCceecCcccHHHH
Confidence            9999999999999999999999998887644  32 1211111 223445555432211        0111234678999


Q ss_pred             cccccccccccccccceeEEEEeeH
Q 029000          149 RIFPLRWQRHKIKFGRLKCIFYLSI  173 (200)
Q Consensus       149 ~~~~~~~~~~~~~fG~~~~~~~~~~  173 (200)
                      ++|...++         ++++|++.
T Consensus       356 ~~~~~~vP---------~~~ifgp~  371 (406)
T TIGR03176       356 QIFAPRVP---------TAMIFVPS  371 (406)
T ss_pred             HHHHHHCC---------EEEEEEeC
Confidence            99987544         55666654

This enzyme catalyzes the breakdown of allantoate, first to ureidoglycine by hydrolysis and then decarboxylation of one of the two equivalent ureido groups. Ureidoglycine then spontaneously exchanges ammonia for water resulting in ureidoglycolate. This enzyme is an alternative to allantoicase (3.5.3.4) which releases urea.

>TIGR01891 amidohydrolases amidohydrolase

Probab=99.71  E-value=5.9e-17  Score=138.97  Aligned_cols=154  Identities=20%  Similarity=0.310  Sum_probs=110.6

Q ss_pred             eEEEEEEeeecCCcCCCCCCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCeEEE
Q 029000            2 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTV   81 (200)
Q Consensus         2 ~~~~I~v~G~~gHas~P~~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~a~~   81 (200)
                      ++++|+++|+++|++.|+.|+||+..+++++.+++++.......         ....++++|.++ +|...|+||++|++
T Consensus       171 ~~~~i~~~G~~~Has~p~~g~nAi~~~~~~i~~l~~~~~~~~~~---------~~~~~~~i~~i~-gG~~~nvvP~~~~~  240 (363)
T TIGR01891       171 DKFEVTIHGKGAHAARPHLGRDALDAAAQLVVALQQIVSRNVDP---------SRPAVVTVGIIE-AGGAPNVIPDKASM  240 (363)
T ss_pred             ceEEEEEEeecccccCcccccCHHHHHHHHHHHHHHHhhccCCC---------CCCcEEEEEEEE-cCCCCcEECCeeEE
Confidence            47999999999999999999999999999999998752221111         123678999999 88899999999999


Q ss_pred             EEEEeCCCCCCHHHHHHHHHHHHHHHhhc--cc-ccccccCcccccCCCcccccc----ceeeec--------CCCCccc
Q 029000           82 SGDVRLTPFYNVTDVMKRLQEYVDDINEN--IE-KLDTRGPVSKYVLPDENIRGR----HVLSLH--------YLTLGRD  146 (200)
Q Consensus        82 ~~diR~~~~~~~e~i~~~i~~~~~~~~~~--v~-~~~~~~~~~~~~~~d~~l~~~----~~~~~~--------~~~~~~e  146 (200)
                      .+|+|+++.++.+++.++|++.+++.+..  ++ ++... ...++...|+++...    .....+        ....|+.
T Consensus       241 ~~diR~~~~~~~e~~~~~i~~~~~~~~~~~~~~ve~~~~-~~~p~~~~~~~l~~~l~~a~~~~~g~~~~~~~~~~~~gg~  319 (363)
T TIGR01891       241 SGTVRSLDPEVRDQIIDRIERIVEGAAAMYGAKVELNYD-RGLPAVTNDPALTQILKEVARHVVGPENVAEDPEVTMGSE  319 (363)
T ss_pred             EEEEEeCCHHHHHHHHHHHHHHHHHHHHHhCCeEEEEEe-cCCCCccCCHHHHHHHHHHHHHhcCccceeccCCCCcccc
Confidence            99999999999999999999999876533  22 12111 122334455543211    111111        2345789


Q ss_pred             cccccccccccccccccceeEEEEeeHHH
Q 029000          147 DFRIFPLRWQRHKIKFGRLKCIFYLSIYK  175 (200)
Q Consensus       147 Df~~~~~~~~~~~~~fG~~~~~~~~~~~~  175 (200)
                      |.++|...++         ++++|++..|
T Consensus       320 Da~~~~~~~P---------~~~~f~~~~~  339 (363)
T TIGR01891       320 DFAYYSQKVP---------GAFFFLGIGN  339 (363)
T ss_pred             CHHHHHHhCC---------eeEEEEecCC
Confidence            9999876554         6777877664

This model represents a subfamily of amidohydrolases which are a subset of those sequences detected by pfam01546. Included within this group are hydrolases of hippurate (N-benzylglycine), indoleacetic acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino acids and aminobenzoylglutamate. These hydrolases are of the carboxypeptidase-type, most likely utilizing a zinc ion in the active site.

>PRK12891 allantoate amidohydrolase; Reviewed

Probab=99.71  E-value=4.3e-17  Score=142.25  Aligned_cols=150  Identities=11%  Similarity=0.052  Sum_probs=105.5

Q ss_pred             eEEEEEEeeecCCcC-CCC-CCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCC-CccceeCCe
Q 029000            2 IPWKLHVTGKLFHSG-LPH-KAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPG-GGINQIPGE   78 (200)
Q Consensus         2 ~~~~I~v~G~~gHas-~P~-~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg-~~~NviP~~   78 (200)
                      .+++|+++|+++||| .|+ .|+|||..+++++.+|+++ .+...           .+.++++|.|+ +| ...|+||++
T Consensus       215 ~~~~v~v~Gk~aHa~~~P~~~g~nAI~~aa~~i~~l~~~-~~~~~-----------~~~t~~vg~I~-gG~~~~NvVP~~  281 (414)
T PRK12891        215 RWYEVTLTGVDAHAGTTPMAFRRDALVGAARMIAFLDAL-GRRDA-----------PDARATVGMID-ARPNSRNTVPGE  281 (414)
T ss_pred             EEEEEEEEeECCCCCCCCcccccCHHHHHHHHHHHHHHH-HHhcC-----------CCeEEEEEEEE-eeCCCcceECCe
Confidence            689999999999988 576 5899999999999999875 22211           23689999999 65 689999999


Q ss_pred             EEEEEEEeCCCCCCHHHHHHHHHHHHHHHhhc--cc-ccccccCcccccCCCcccccccee--------eecCCCCcccc
Q 029000           79 CTVSGDVRLTPFYNVTDVMKRLQEYVDDINEN--IE-KLDTRGPVSKYVLPDENIRGRHVL--------SLHYLTLGRDD  147 (200)
Q Consensus        79 a~~~~diR~~~~~~~e~i~~~i~~~~~~~~~~--v~-~~~~~~~~~~~~~~d~~l~~~~~~--------~~~~~~~~~eD  147 (200)
                      |++++|+|++++++.+++.++|++++++.+..  ++ ++... ...++..+|+++...+..        .......|++|
T Consensus       282 ~~~~~diR~~~~e~~e~v~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~lv~~l~~a~~~~G~~~~~~~~~ggtD  360 (414)
T PRK12891        282 CFFTVEFRHPDDAVLDRLDAALRAELARIADETGLRADIEQI-FGYAPAPFAPGCIDAVRDAARALGLSHMDIVSGAGHD  360 (414)
T ss_pred             EEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHHhCCEEEEEEE-ecCCCcCCCHHHHHHHHHHHHHcCCCceecCCcchHH
Confidence            99999999999999999999999999876433  22 11111 122334556654322110        01123467889


Q ss_pred             ccccccccccccccccceeEEEEeeHH
Q 029000          148 FRIFPLRWQRHKIKFGRLKCIFYLSIY  174 (200)
Q Consensus       148 f~~~~~~~~~~~~~fG~~~~~~~~~~~  174 (200)
                      ++++...++         ++++|++..
T Consensus       361 a~~~~~giP---------t~~~~gp~~  378 (414)
T PRK12891        361 ACFAARGAP---------TGMIFVPCV  378 (414)
T ss_pred             HHHHHhhCC---------EEEEEEcCC
Confidence            888754333         455565544

>PRK08588 succinyl-diaminopimelate desuccinylase; Reviewed

Probab=99.70  E-value=1.2e-16  Score=137.49  Aligned_cols=156  Identities=22%  Similarity=0.275  Sum_probs=108.1

Q ss_pred             eEEEEEEeeecCCcCCCCCCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCeEEE
Q 029000            2 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTV   81 (200)
Q Consensus         2 ~~~~I~v~G~~gHas~P~~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~a~~   81 (200)
                      ++++|+++|+++|+|.|+.|+|||..+++++.++++. ...+....     ......+++++.++ +|...|+||++|++
T Consensus       174 ~~~~i~~~G~~~Hss~p~~g~nAi~~~~~~l~~l~~~-~~~~~~~~-----~~~~~~t~~v~~i~-gG~~~nvip~~~~~  246 (377)
T PRK08588        174 MDYKVTSTGKAAHSSMPELGVNAIDPLLEFYNEQKEY-FDSIKKHN-----PYLGGLTHVVTIIN-GGEQVNSVPDEAEL  246 (377)
T ss_pred             EEEEEEEEeechhccCCccccCHHHHHHHHHHHHHHH-hhhhcccC-----ccCCCCceeeeEEe-CCCcCCcCCCeEEE
Confidence            5799999999999999999999999999999999874 22222110     11234789999999 99999999999999


Q ss_pred             EEEEeCCCCCCHHHHHHHHHHHHHHHhhc----ccccc-cccCcccccCCCccccccc----eeeec-----CCCCcccc
Q 029000           82 SGDVRLTPFYNVTDVMKRLQEYVDDINEN----IEKLD-TRGPVSKYVLPDENIRGRH----VLSLH-----YLTLGRDD  147 (200)
Q Consensus        82 ~~diR~~~~~~~e~i~~~i~~~~~~~~~~----v~~~~-~~~~~~~~~~~d~~l~~~~----~~~~~-----~~~~~~eD  147 (200)
                      ++|+|++++++.+++.++|++++++.+..    ++ +. ....++...+.|+++...+    ...++     ....|+.|
T Consensus       247 ~~d~R~~p~~~~~~v~~~i~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~g~tD  325 (377)
T PRK08588        247 EFNIRTIPEYDNDQVISLLQEIINEVNQNGAAQLS-LDIYSNHRPVASDKDSKLVQLAKDVAKSYVGQDIPLSAIPGATD  325 (377)
T ss_pred             EEEeccCCCCCHHHHHHHHHHHHHHHhhccCCceE-EEEecCCCCcCCCCCCHHHHHHHHHHHHhhCCCCceecCCCccc
Confidence            99999999999999999999999876532    22 11 1112223344555543221    11111     12457899


Q ss_pred             ccccccccc-cccccccce
Q 029000          148 FRIFPLRWQ-RHKIKFGRL  165 (200)
Q Consensus       148 f~~~~~~~~-~~~~~fG~~  165 (200)
                      +++|....+ ...+.|||+
T Consensus       326 ~~~~~~~~~~ip~i~~Gpg  344 (377)
T PRK08588        326 ASSFLKKKPDFPVIIFGPG  344 (377)
T ss_pred             HHHHhhhcCCCCEEEECCC
Confidence            999864321 122346655

>PRK06915 acetylornithine deacetylase; Validated

Probab=99.70  E-value=1.7e-16  Score=138.68  Aligned_cols=161  Identities=16%  Similarity=0.219  Sum_probs=108.2

Q ss_pred             eEEEEEEeeecCCcCCCCCCCCHHHHHHHHHHHHhHhhcccCCCCCCCccC-CCCCCceEeeeEEecCCCccceeCCeEE
Q 029000            2 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVY-GFETPSTMKPTQWSYPGGGINQIPGECT   80 (200)
Q Consensus         2 ~~~~I~v~G~~gHas~P~~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~-~~~~~~t~~~g~i~~gg~~~NviP~~a~   80 (200)
                      ++++|+++|+++|+|.|+.|+||+.++++++.+|+++.... ......+.. ....+.++++|.|+ ||...|+||++|+
T Consensus       206 ~~~~i~v~G~~~H~s~p~~g~nAi~~~~~~~~~l~~l~~~~-~~~~~~~~~~~~~~~~t~~v~~i~-gG~~~nvvP~~a~  283 (422)
T PRK06915        206 MWFRLHVKGKAAHGGTRYEGVSAIEKSMFVIDHLRKLEEKR-NDRITDPLYKGIPIPIPINIGKIE-GGSWPSSVPDSVI  283 (422)
T ss_pred             EEEEEEEEeeccccCCCCcCcCHHHHHHHHHHHHHHHHHHh-ccccCCCcccCCCCCceEeEEEee-CCCCCCccCcEEE
Confidence            58999999999999999999999999999999998752111 100000000 01124589999999 9999999999999


Q ss_pred             EEEEEeCCCCCCHHHHHHHHHHHHHHHhhc--------cccccccc--CcccccCCCccccccc----eeeecC-----C
Q 029000           81 VSGDVRLTPFYNVTDVMKRLQEYVDDINEN--------IEKLDTRG--PVSKYVLPDENIRGRH----VLSLHY-----L  141 (200)
Q Consensus        81 ~~~diR~~~~~~~e~i~~~i~~~~~~~~~~--------v~~~~~~~--~~~~~~~~d~~l~~~~----~~~~~~-----~  141 (200)
                      +.+|+|++|.++.+++.++|++.+++.+..        ++ +....  ..+..++.|+++...+    ....+.     .
T Consensus       284 ~~~d~R~~p~~~~~~v~~~i~~~l~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~d~~lv~~l~~a~~~~~G~~~~~~~  362 (422)
T PRK06915        284 LEGRCGIAPNETIEAAKEEFENWIAELNDVDEWFVEHPVE-VEWFGARWVPGELEENHPLMTTLEHNFVEIEGNKPIIEA  362 (422)
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHHHHHhccChhhhcCCce-EEeecccCCcccCCCCCHHHHHHHHHHHHHhCCCCeece
Confidence            999999999999999999999998876542        21 11111  1122345566543221    111111     2


Q ss_pred             CCccccccccccccccccccccce
Q 029000          142 TLGRDDFRIFPLRWQRHKIKFGRL  165 (200)
Q Consensus       142 ~~~~eDf~~~~~~~~~~~~~fG~~  165 (200)
                      ..++.|+++|...+....+-|||+
T Consensus       363 ~~g~tD~~~~~~~~giP~v~fGpg  386 (422)
T PRK06915        363 SPWGTDGGLLTQIAGVPTIVFGPG  386 (422)
T ss_pred             eeeeccHHHHhccCCCCEEEECCC
Confidence            346799999986422223556664

>PRK12893 allantoate amidohydrolase; Reviewed

Probab=99.69  E-value=1.2e-16  Score=139.09  Aligned_cols=140  Identities=14%  Similarity=0.090  Sum_probs=99.9

Q ss_pred             eEEEEEEeeecCCcCC-CC-CCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCeE
Q 029000            2 IPWKLHVTGKLFHSGL-PH-KAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGEC   79 (200)
Q Consensus         2 ~~~~I~v~G~~gHas~-P~-~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~a   79 (200)
                      ++++|+++|+++|+|. |+ .|+|||.++++++.+|+++.. ...           ...++++|.++.++...|+||++|
T Consensus       215 ~~~~i~v~G~~aHas~~p~~~G~NAI~~a~~~i~~l~~~~~-~~~-----------~~~~~~vg~i~ggg~~~NvVP~~a  282 (412)
T PRK12893        215 RWLEVTVEGQAAHAGTTPMAMRRDALVAAARIILAVERIAA-ALA-----------PDGVATVGRLRVEPNSRNVIPGKV  282 (412)
T ss_pred             EEEEEEEEEECCCcCCCcchhccCHHHHHHHHHHHHHHHHH-hcC-----------CCceEEEEEEEeeCCCceEECCee
Confidence            6899999999999885 84 799999999999999987532 211           135789999994457999999999


Q ss_pred             EEEEEEeCCCCCCHHHHHHHHHHHHHHHhhc--cc-ccccccCcccccCCCccccccce----e----eecCCCCccccc
Q 029000           80 TVSGDVRLTPFYNVTDVMKRLQEYVDDINEN--IE-KLDTRGPVSKYVLPDENIRGRHV----L----SLHYLTLGRDDF  148 (200)
Q Consensus        80 ~~~~diR~~~~~~~e~i~~~i~~~~~~~~~~--v~-~~~~~~~~~~~~~~d~~l~~~~~----~----~~~~~~~~~eDf  148 (200)
                      ++++|+|++++++.+++.++|++++++.+..  ++ ++... ...++...|+.+...+.    .    .......|+.|+
T Consensus       283 ~~~~diR~~p~~~~~~i~~~i~~~~~~~~~~~~~~v~~~~~-~~~~~~~~d~~l~~~l~~~~~~~g~~~~~~~~~g~tD~  361 (412)
T PRK12893        283 VFTVDIRHPDDARLDAMEAALRAACAKIAAARGVQVTVETV-WDFPPVPFDPALVALVEAAAEALGLSHMRMVSGAGHDA  361 (412)
T ss_pred             EEEEEeeCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEEE-ecCCCcCCCHHHHHHHHHHHHHcCCCccccCCccHHHH
Confidence            9999999999999999999999999876543  22 11111 12233444554322111    0    011134577899


Q ss_pred             cccccc
Q 029000          149 RIFPLR  154 (200)
Q Consensus       149 ~~~~~~  154 (200)
                      ++|...
T Consensus       362 ~~~~~~  367 (412)
T PRK12893        362 MFLARV  367 (412)
T ss_pred             HHHHhh
Confidence            998653

>PRK09290 allantoate amidohydrolase; Reviewed

Probab=99.68  E-value=4.2e-16  Score=135.93  Aligned_cols=141  Identities=16%  Similarity=0.145  Sum_probs=100.5

Q ss_pred             eEEEEEEeeecCCcC-CC-CCCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCeE
Q 029000            2 IPWKLHVTGKLFHSG-LP-HKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGEC   79 (200)
Q Consensus         2 ~~~~I~v~G~~gHas-~P-~~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~a   79 (200)
                      ++++|+++|+++|+| .| +.|+|||..+++++.+|+++..+. .           .+.++++|.++.++...|+||++|
T Consensus       216 ~~~~i~v~Gk~aHas~~P~~~g~NAI~~~~~~i~~l~~l~~~~-~-----------~~~~~~~g~i~~g~~~~NvIP~~a  283 (413)
T PRK09290        216 RRYRVTFTGEANHAGTTPMALRRDALLAAAEIILAVERIAAAH-G-----------PDLVATVGRLEVKPNSVNVIPGEV  283 (413)
T ss_pred             EEEEEEEEEECCCCCCCCchhccCHHHHHHHHHHHHHHHHHhc-C-----------CCeEEEEEEEEEcCCCCeEECCEE
Confidence            689999999999988 68 589999999999999998752211 1           135788999994457999999999


Q ss_pred             EEEEEEeCCCCCCHHHHHHHHHHHHHHHhhc--cc-ccccccCcccccCCCccccccc----ee----eecCCCCccccc
Q 029000           80 TVSGDVRLTPFYNVTDVMKRLQEYVDDINEN--IE-KLDTRGPVSKYVLPDENIRGRH----VL----SLHYLTLGRDDF  148 (200)
Q Consensus        80 ~~~~diR~~~~~~~e~i~~~i~~~~~~~~~~--v~-~~~~~~~~~~~~~~d~~l~~~~----~~----~~~~~~~~~eDf  148 (200)
                      ++.+|+|++++++.+++.++|++.+++.+..  ++ ++... ...++...|+++...+    ..    .......|+.|+
T Consensus       284 ~~~~diR~~p~e~~e~v~~~i~~~~~~~~~~~~~~~e~~~~-~~~~~~~~d~~lv~~l~~a~~~~g~~~~~~~~~g~tDa  362 (413)
T PRK09290        284 TFTLDIRHPDDAVLDALVAELRAAAEAIAARRGVEVEIELI-SRRPPVPFDPGLVAALEEAAERLGLSYRRLPSGAGHDA  362 (413)
T ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEEE-ecCCCccCCHHHHHHHHHHHHHcCCCccccCCccchHH
Confidence            9999999999999999999999999876432  22 11111 1123344565533211    00    111234578999


Q ss_pred             ccccccc
Q 029000          149 RIFPLRW  155 (200)
Q Consensus       149 ~~~~~~~  155 (200)
                      ++|...+
T Consensus       363 ~~~~~~i  369 (413)
T PRK09290        363 QILAAVV  369 (413)
T ss_pred             HHHhccC
Confidence            9995443

>PRK12890 allantoate amidohydrolase; Reviewed

Probab=99.66  E-value=3.5e-16  Score=136.41  Aligned_cols=140  Identities=16%  Similarity=0.124  Sum_probs=99.8

Q ss_pred             eEEEEEEeeecCCcCC-CC-CCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCeE
Q 029000            2 IPWKLHVTGKLFHSGL-PH-KAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGEC   79 (200)
Q Consensus         2 ~~~~I~v~G~~gHas~-P~-~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~a   79 (200)
                      +|++|+++|+++|+|. |+ .+.|||..+++++.+|+++. ....           .+.++++|.++.++...|+||++|
T Consensus       217 ~~~~i~v~Gk~aHas~~P~~~g~nAI~~~~~~i~~l~~~~-~~~~-----------~~~~~~~g~i~~gg~~~NvIP~~a  284 (414)
T PRK12890        217 RRQAVTVEGEANHAGTTPMDLRRDALVAAAELVTAMERRA-RALL-----------HDLVATVGRLDVEPNAINVVPGRV  284 (414)
T ss_pred             EEEEEEEEEECCCCCcCChhhccCHHHHHHHHHHHHHHHH-HhcC-----------CCeEEEEEEEEECCCCceEECCeE
Confidence            6899999999999985 85 45899999999999998853 2211           236789999994468999999999


Q ss_pred             EEEEEEeCCCCCCHHHHHHHHHHHHHHHhhc--cc-ccccccCcccccCCCccccccc----ee----eecCCCCccccc
Q 029000           80 TVSGDVRLTPFYNVTDVMKRLQEYVDDINEN--IE-KLDTRGPVSKYVLPDENIRGRH----VL----SLHYLTLGRDDF  148 (200)
Q Consensus        80 ~~~~diR~~~~~~~e~i~~~i~~~~~~~~~~--v~-~~~~~~~~~~~~~~d~~l~~~~----~~----~~~~~~~~~eDf  148 (200)
                      ++.+|+|++++++.+++.++|++.+++.+..  ++ ++... ..+++...|+++...+    ..    .......|+.|+
T Consensus       285 ~~~~diR~~p~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~g~~~~~~~~~g~tDa  363 (414)
T PRK12890        285 VFTLDLRSPDDAVLEAAEAALLAELEAIAAARGVRIELERL-SRSEPVPCDPALVDAVEAAAARLGYPSRRMPSGAGHDA  363 (414)
T ss_pred             EEEEEeeCCCHHHHHHHHHHHHHHHHHHHHHhCCeEEEEEe-ecCCCcCCCHHHHHHHHHHHHHcCCCceecCCcccHHH
Confidence            9999999999999999999999998876543  22 12111 1233445555532211    00    001134578999


Q ss_pred             cccccc
Q 029000          149 RIFPLR  154 (200)
Q Consensus       149 ~~~~~~  154 (200)
                      ++|...
T Consensus       364 ~~~~~~  369 (414)
T PRK12890        364 AAIARI  369 (414)
T ss_pred             HHHHhh
Confidence            999653

>PRK12892 allantoate amidohydrolase; Reviewed

Probab=99.65  E-value=6.8e-16  Score=134.37  Aligned_cols=140  Identities=17%  Similarity=0.147  Sum_probs=99.5

Q ss_pred             eEEEEEEeeecCCcCC-CC-CCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCeE
Q 029000            2 IPWKLHVTGKLFHSGL-PH-KAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGEC   79 (200)
Q Consensus         2 ~~~~I~v~G~~gHas~-P~-~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~a   79 (200)
                      ++++|+++|+++|+|. |+ .|.|||..+++++.+++++. ...           ..+.++++|.++.++...|+||++|
T Consensus       216 ~~~~i~v~G~~aHa~~~p~~~g~nAi~~a~~~i~~l~~~~-~~~-----------~~~~~~~vg~i~gg~~~~NvIP~~a  283 (412)
T PRK12892        216 WQYRITVTGEAGHAGTTPMALRRDAGLAAAEMIAAIDEHF-PRV-----------CGPAVVTVGRVALDPGSPSIIPGRV  283 (412)
T ss_pred             eEEEEEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHH-Hhc-----------CCCcEEEEEEEEecCCCCeEECCeE
Confidence            6899999999999875 65 67999999999999998742 211           1236889999993347999999999


Q ss_pred             EEEEEEeCCCCCCHHHHHHHHHHHHHHHhhc--cc-ccccccCcccccCCCccccccc----ee----eecCCCCccccc
Q 029000           80 TVSGDVRLTPFYNVTDVMKRLQEYVDDINEN--IE-KLDTRGPVSKYVLPDENIRGRH----VL----SLHYLTLGRDDF  148 (200)
Q Consensus        80 ~~~~diR~~~~~~~e~i~~~i~~~~~~~~~~--v~-~~~~~~~~~~~~~~d~~l~~~~----~~----~~~~~~~~~eDf  148 (200)
                      ++++|+|++++++.+++.++|++.++..+..  ++ ++... ..+++...|+++...+    ..    .......|+.|+
T Consensus       284 ~~~~diR~~p~~~~~~v~~~i~~~~~~~~~~~~~~~e~~~~-~~~~~~~~d~~lv~~~~~a~~~~g~~~~~~~~~g~tDa  362 (412)
T PRK12892        284 EFSFDARHPSPPVLQRLVALLEALCREIARRRGCRVSVDRI-AEYAPAPCDAALVDALRAAAEAAGGPYLEMPSGAGHDA  362 (412)
T ss_pred             EEEEEeeCCCHHHHHHHHHHHHHHHHHHHHHhCCeEEEEEE-ecCCCcCCCHHHHHHHHHHHHHcCCCccccCcchHHHH
Confidence            9999999999999999999999999876433  22 11111 1223344555543221    11    001234577999


Q ss_pred             cccccc
Q 029000          149 RIFPLR  154 (200)
Q Consensus       149 ~~~~~~  154 (200)
                      ++|...
T Consensus       363 ~~~~~~  368 (412)
T PRK12892        363 QNMARI  368 (412)
T ss_pred             HHHHhH
Confidence            998654

>PRK13007 succinyl-diaminopimelate desuccinylase; Reviewed

Probab=99.65  E-value=9.9e-16  Score=130.55  Aligned_cols=100  Identities=19%  Similarity=0.268  Sum_probs=83.1

Q ss_pred             eEEEEEEeeecCCcCCCCCCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCeEEE
Q 029000            2 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTV   81 (200)
Q Consensus         2 ~~~~I~v~G~~gHas~P~~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~a~~   81 (200)
                      ++++|+++|+++|||.|+.|.||+..+++++.++++.........      +.....+++++.++ +|...|+||++|++
T Consensus       168 ~~~~i~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~------~~~~~~~~~~~~i~-gG~~~nviP~~a~~  240 (352)
T PRK13007        168 LRVTVTFHGRRAHSARSWLGENAIHKAAPVLARLAAYEPREVVVD------GLTYREGLNAVRIS-GGVAGNVIPDECVV  240 (352)
T ss_pred             EEEEEEEEecccccCCCccCcCHHHHHHHHHHHHHHhcccccccC------CCCccceeEeEeEe-cCCcCccCCCeEEE
Confidence            689999999999999999999999999999999987421111100      11113578899999 99999999999999


Q ss_pred             EEEEeCCCCCCHHHHHHHHHHHHHHHh
Q 029000           82 SGDVRLTPFYNVTDVMKRLQEYVDDIN  108 (200)
Q Consensus        82 ~~diR~~~~~~~e~i~~~i~~~~~~~~  108 (200)
                      ++|+|++|+++.+++.++|++.+++.+
T Consensus       241 ~~diR~~p~~~~~~v~~~i~~~~~~~~  267 (352)
T PRK13007        241 NVNYRFAPDRSLEEALAHVREVFDGFA  267 (352)
T ss_pred             EEEEeeCCCCCHHHHHHHHHHHhcccc
Confidence            999999999999999999999887654

>TIGR01910 DapE-ArgE acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase

Probab=99.65  E-value=5.1e-16  Score=133.60  Aligned_cols=148  Identities=20%  Similarity=0.242  Sum_probs=103.8

Q ss_pred             eEEEEEEeeecCCcCCCCCCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCeEEE
Q 029000            2 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTV   81 (200)
Q Consensus         2 ~~~~I~v~G~~gHas~P~~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~a~~   81 (200)
                      ++++|+++|+++|+|.|+.|.||+..+++++.+|+++. ........  ........+++++.++ +|...|+||++|++
T Consensus       180 ~~~~i~~~G~~~Hs~~p~~g~nAi~~~~~~l~~l~~~~-~~~~~~~~--~~~~~~~~t~~i~~i~-gG~~~nviP~~~~~  255 (375)
T TIGR01910       180 IWFKLRVKGKQAHASFPQFGVNAIMKLAKLITELNELE-EHIYARNS--YGFIPGPITFNPGVIK-GGDWVNSVPDYCEF  255 (375)
T ss_pred             EEEEEEEeeeecccCCCCcchhHHHHHHHHHHHHHHHH-HHhhhccc--ccccCCCccccceeEE-CCCCcCcCCCEEEE
Confidence            68999999999999999999999999999999998752 11111100  0001234688999999 99999999999999


Q ss_pred             EEEEeCCCCCCHHHHHHHHHHHHHHHhhc--cc-cccc-ccCc-ccccCCCccccccc----eeeec-----CCCCcccc
Q 029000           82 SGDVRLTPFYNVTDVMKRLQEYVDDINEN--IE-KLDT-RGPV-SKYVLPDENIRGRH----VLSLH-----YLTLGRDD  147 (200)
Q Consensus        82 ~~diR~~~~~~~e~i~~~i~~~~~~~~~~--v~-~~~~-~~~~-~~~~~~d~~l~~~~----~~~~~-----~~~~~~eD  147 (200)
                      .+|+|+.+.++.+++.++|++++++.+..  ++ ++.. ...+ +...+.|+++...+    ...++     ....|+.|
T Consensus       256 ~~diR~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~tD  335 (375)
T TIGR01910       256 SIDVRIIPEENLDEVKQIIEDVVKALSKSDGWLYENEPVVKWSGPNETPPDSRLVKALEAIIKKVRGIEPEVLVSTGGTD  335 (375)
T ss_pred             EEEeeeCCCCCHHHHHHHHHHHHHHHhhcCcHHhhCCCeeeecCCcCCCCCCHHHHHHHHHHHHHhCCCCeEeeeccchh
Confidence            99999999999999999999999876532  21 1111 1111 23455565533221    11111     12457899


Q ss_pred             cccccc
Q 029000          148 FRIFPL  153 (200)
Q Consensus       148 f~~~~~  153 (200)
                      ++++..
T Consensus       336 ~~~~~~  341 (375)
T TIGR01910       336 ARFLRK  341 (375)
T ss_pred             HHHHHH
Confidence            999965

This group of sequences contains annotations for both acetylornithine deacetylase and succinyl-diaminopimelate desuccinylase, but does not contain any members with experimental characterization. Bacillus, Staphylococcus and Sulfolobus species contain multiple hits to this subfamily and each may have a separate activity. Determining which is which must await further laboratory research.

>TIGR01879 hydantase amidase, hydantoinase/carbamoylase family

Probab=99.65  E-value=4.7e-16  Score=135.20  Aligned_cols=140  Identities=18%  Similarity=0.193  Sum_probs=99.6

Q ss_pred             eEEEEEEeeecCCcCCCC--CCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCeE
Q 029000            2 IPWKLHVTGKLFHSGLPH--KAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGEC   79 (200)
Q Consensus         2 ~~~~I~v~G~~gHas~P~--~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~a   79 (200)
                      +|++|+++|+++|++.|+  .|+||+.++++++.+|+++..+. .           .+.+.++|.++.++...|+||++|
T Consensus       208 ~~~~i~v~G~~aHa~~~p~~~g~nAi~~aa~~i~~l~~l~~~~-~-----------~~~~~~vg~i~~g~~~~NvVP~~a  275 (401)
T TIGR01879       208 RWYKVTLNGESNHAGTTPMSLRRDPLVAASRIIHQVEEKAKRM-G-----------DPTVGTVGKVEARPNGVNVIPGKV  275 (401)
T ss_pred             EEEEEEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHhc-C-----------CCeEEEEEEEEecCCceEEECCEE
Confidence            689999999999998644  57999999999999998753221 1           124678999994457899999999


Q ss_pred             EEEEEEeCCCCCCHHHHHHHHHHHHHHHhhc--cc-ccccccCcccccCCCccccccc----eee----ecCCCCccccc
Q 029000           80 TVSGDVRLTPFYNVTDVMKRLQEYVDDINEN--IE-KLDTRGPVSKYVLPDENIRGRH----VLS----LHYLTLGRDDF  148 (200)
Q Consensus        80 ~~~~diR~~~~~~~e~i~~~i~~~~~~~~~~--v~-~~~~~~~~~~~~~~d~~l~~~~----~~~----~~~~~~~~eDf  148 (200)
                      ++.+|+|++|+++.+++.++|++.+++.+..  ++ ++... ...++...|+++...+    ...    ......++.|+
T Consensus       276 ~~~~diR~~p~~~~e~v~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~lv~~l~~a~~~~g~~~~~~~~~ggtDa  354 (401)
T TIGR01879       276 TFTLDLRHTDAAVLRDFTQQLENDIKAISDERDIGIDIERW-MDEEPVPCSEELVAALTELCERLGYNARVMVSGAGHDA  354 (401)
T ss_pred             EEEEEeeCCCHHHHHHHHHHHHHHHHHHHHHcCceEEEEEe-ecCCCcCCCHHHHHHHHHHHHHcCCCccccccchHHHH
Confidence            9999999999999999999999999876543  22 11111 1233455666543222    100    01124578999


Q ss_pred             cccccc
Q 029000          149 RIFPLR  154 (200)
Q Consensus       149 ~~~~~~  154 (200)
                      ++|...
T Consensus       355 ~~~~~~  360 (401)
T TIGR01879       355 QILAPI  360 (401)
T ss_pred             HHHHhh
Confidence            999653

Enzymes in this subfamily hydrolize the amide bonds of compounds containing carbamoyl groups or hydantoin rings. These enzymes are members of the broader family of amidases represented by pfam01546.

>PRK08737 acetylornithine deacetylase; Provisional

Probab=99.64  E-value=1.8e-15  Score=130.04  Aligned_cols=100  Identities=13%  Similarity=0.060  Sum_probs=81.0

Q ss_pred             eEEEEEEeeecCCcCCC-CCCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCeEE
Q 029000            2 IPWKLHVTGKLFHSGLP-HKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECT   80 (200)
Q Consensus         2 ~~~~I~v~G~~gHas~P-~~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~a~   80 (200)
                      ++++|+++|+++|+|.| +.|+|||..+++++.++.+.......+.     .....+.++++|.|+ ||...|+||++|+
T Consensus       168 ~~~~v~v~Gk~aHas~p~~~G~NAI~~~~~~l~~~~~~~~~~~~~~-----~~~~~~~t~~vg~i~-GG~~~NvVP~~a~  241 (364)
T PRK08737        168 SSVLMRFAGRAGHASGKQDPSASALHQAMRWGGQALDHVESLAHAR-----FGGLTGLRFNIGRVE-GGIKANMIAPAAE  241 (364)
T ss_pred             EEEEEEEEeeccccCCCcccCCCHHHHHHHHHHHHHHHHHhhhhhc-----cCCCCCCceEEeeEe-cCCCCCcCCCceE
Confidence            68999999999999998 5899999999999988765322111100     000123589999999 9999999999999


Q ss_pred             EEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 029000           81 VSGDVRLTPFYNVTDVMKRLQEYVDDI  107 (200)
Q Consensus        81 ~~~diR~~~~~~~e~i~~~i~~~~~~~  107 (200)
                      +++|+|++|+++.+++.++|+++++..
T Consensus       242 ~~~d~R~~p~~~~e~v~~~i~~~~~~~  268 (364)
T PRK08737        242 LRFGFRPLPSMDVDGLLATFAGFAEPA  268 (364)
T ss_pred             EEEEeeeCCCCCHHHHHHHHHHHHHHc
Confidence            999999999999999999998877653

>TIGR01246 dapE_proteo succinyl-diaminopimelate desuccinylase, proteobacterial clade

Probab=99.64  E-value=9.2e-16  Score=131.72  Aligned_cols=154  Identities=21%  Similarity=0.266  Sum_probs=105.5

Q ss_pred             eEEEEEEeeecCCcCCCCCCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCC-ccceeCCeEE
Q 029000            2 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGG-GINQIPGECT   80 (200)
Q Consensus         2 ~~~~I~v~G~~gHas~P~~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~-~~NviP~~a~   80 (200)
                      ++++++++|+++|+|.|+.|.||+..+++++..|++.....   .     .....+.+++++.++ +|. ..|++|++|+
T Consensus       178 ~~~~v~v~G~~~H~~~p~~g~nAi~~~~~~i~~l~~~~~~~---~-----~~~~~~~t~~i~~i~-~g~~~~nvvP~~~~  248 (370)
T TIGR01246       178 ITGNLTIKGIQGHVAYPHLANNPIHKAAPALAELTAIKWDE---G-----NEFFPPTSLQITNIH-AGTGANNVIPGELY  248 (370)
T ss_pred             EEEEEEEEccCcccCCcccCCCHHHHHHHHHHHHhhhhhcc---C-----CccCCCCceEeeeee-cCCCCCcccCCceE
Confidence            57999999999999999999999999999999987642111   0     012345689999999 664 7899999999


Q ss_pred             EEEEEeCCCCCCHHHHHHHHHHHHHHHhhcccccccccCcccccCCCccccccc----eeeec-----CCCCcccccccc
Q 029000           81 VSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGRH----VLSLH-----YLTLGRDDFRIF  151 (200)
Q Consensus        81 ~~~diR~~~~~~~e~i~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~~l~~~~----~~~~~-----~~~~~~eDf~~~  151 (200)
                      +.+|+|++++++.+++.++|++.++..+..++ +......+++..+|+++...+    ...++     ....|+.|++++
T Consensus       249 ~~~diR~~~~~~~~~v~~~i~~~~~~~~~~~~-v~~~~~~~p~~~~~~~~~~~~~~a~~~~~g~~~~~~~~~g~~d~~~~  327 (370)
T TIGR01246       249 VQFNLRFSTEVSDEILKQRVEAILDQHGLDYD-LEWSLSGEPFLTNDGKLIDKAREAIEETNGIKPELSTGGGTSDGRFI  327 (370)
T ss_pred             EEEEEecCCCCCHHHHHHHHHHHHHHcCCCEE-EEEecCCcceeCCCCHHHHHHHHHHHHHhCCCCceecCCCCchHHHH
Confidence            99999999999999999999999887544433 111111123323355432221    11111     123456898888


Q ss_pred             cccccccccccccee
Q 029000          152 PLRWQRHKIKFGRLK  166 (200)
Q Consensus       152 ~~~~~~~~~~fG~~~  166 (200)
                      .. .....+.|||+.
T Consensus       328 ~~-~g~p~~~~Gp~~  341 (370)
T TIGR01246       328 AL-MGAEVVEFGPVN  341 (370)
T ss_pred             HH-cCCCEEEecCCc
Confidence            54 334455677753

This model describes a proteobacterial subset of succinyl-diaminopimelate desuccinylases. An experimentally confirmed Gram-positive lineage succinyl-diaminopimelate desuccinylase has been described for Corynebacterium glutamicum, and a neighbor-joining tree shows the seed members, SP:Q59284, and putative archaeal members such as TrEMBL:O58003 in a single clade. However, the archaeal members differ substantially, share a number of motifs with acetylornithine deacetylases rather than succinyl-diaminopimelate desuccinylases, and are not taken as trusted examples of succinyl-diaminopimelate desuccinylases. This model is limited to proteobacterial members for this reason.

>PRK13009 succinyl-diaminopimelate desuccinylase; Reviewed

Probab=99.64  E-value=1.3e-15  Score=130.87  Aligned_cols=101  Identities=26%  Similarity=0.351  Sum_probs=83.7

Q ss_pred             eEEEEEEeeecCCcCCCCCCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCC-ccceeCCeEE
Q 029000            2 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGG-GINQIPGECT   80 (200)
Q Consensus         2 ~~~~I~v~G~~gHas~P~~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~-~~NviP~~a~   80 (200)
                      ++++|+++|+++|+|.|+.|.||+..+++++.+|+....+..  .      ....+.+++++.|+ +|. ..|++|++|+
T Consensus       181 ~~~~i~v~G~~~Ha~~p~~g~nAi~~~~~~l~~l~~~~~~~~--~------~~~~~~~~~i~~i~-~G~~~~nvip~~~~  251 (375)
T PRK13009        181 LTGKLTVKGVQGHVAYPHLADNPIHLAAPALAELAATEWDEG--N------EFFPPTSLQITNID-AGTGATNVIPGELE  251 (375)
T ss_pred             EEEEEEEEecCcccCCCCcccCHHHHHHHHHHHHHhhhccCC--C------ccCCCceEEEEEEe-cCCCCCcccCCcEE
Confidence            589999999999999999999999999999999987421110  0      11234688999999 554 7899999999


Q ss_pred             EEEEEeCCCCCCHHHHHHHHHHHHHHHhhcc
Q 029000           81 VSGDVRLTPFYNVTDVMKRLQEYVDDINENI  111 (200)
Q Consensus        81 ~~~diR~~~~~~~e~i~~~i~~~~~~~~~~v  111 (200)
                      +.+|+|+++.++.+++.++|++.+++.+.++
T Consensus       252 ~~~diR~~~~~~~e~i~~~i~~~~~~~~~~~  282 (375)
T PRK13009        252 AQFNFRFSTEHTAESLKARVEAILDKHGLDY  282 (375)
T ss_pred             EEEEEecCCCCCHHHHHHHHHHHHHhcCCCe
Confidence            9999999999999999999999998654443

>PRK08651 succinyl-diaminopimelate desuccinylase; Reviewed

Probab=99.63  E-value=2.1e-15  Score=130.41  Aligned_cols=106  Identities=22%  Similarity=0.227  Sum_probs=84.1

Q ss_pred             eEEEEEEeeecCCcCCCCCCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeE--EecCCCccceeCCeE
Q 029000            2 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQ--WSYPGGGINQIPGEC   79 (200)
Q Consensus         2 ~~~~I~v~G~~gHas~P~~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~--i~~gg~~~NviP~~a   79 (200)
                      .+++|+++|+++|++.|+.|.||+..+++++.+|++...+.......  ........+.++|.  ++ +|...|++|++|
T Consensus       185 ~~~~i~v~G~~~H~~~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~~~--~~~~~~~~~~~ig~~~i~-gG~~~nviP~~a  261 (394)
T PRK08651        185 VWGVVKVYGKQAHASTPWLGINAFEAAAKIAERLKSSLSTIKSKYEY--DDERGAKPTVTLGGPTVE-GGTKTNIVPGYC  261 (394)
T ss_pred             EEEEEEEEEeccccCCCccccCHHHHHHHHHHHHHHHHHhhhccccc--cccccCCCceeecceeee-CCCCCCccCCEE
Confidence            58999999999999999999999999999999998642111110000  00011235678888  88 899999999999


Q ss_pred             EEEEEEeCCCCCCHHHHHHHHHHHHHHHhhc
Q 029000           80 TVSGDVRLTPFYNVTDVMKRLQEYVDDINEN  110 (200)
Q Consensus        80 ~~~~diR~~~~~~~e~i~~~i~~~~~~~~~~  110 (200)
                      ++.+|+|++++.+.+++.++|++.+++.+..
T Consensus       262 ~~~~diR~~~~~~~e~i~~~i~~~~~~~~~~  292 (394)
T PRK08651        262 AFSIDRRLIPEETAEEVRDELEALLDEVAPE  292 (394)
T ss_pred             EEEEEeeeCCCCCHHHHHHHHHHHHHHHhhc
Confidence            9999999999999999999999999876543

>PRK13590 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional

Probab=99.63  E-value=1.4e-15  Score=138.10  Aligned_cols=140  Identities=16%  Similarity=0.179  Sum_probs=101.0

Q ss_pred             eEEEEEEeeecCCcCCCC--CCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCeE
Q 029000            2 IPWKLHVTGKLFHSGLPH--KAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGEC   79 (200)
Q Consensus         2 ~~~~I~v~G~~gHas~P~--~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~a   79 (200)
                      .+++|+++|+++|||.|+  .+.||+..+++++..+++.. .. .           ...+.++|.++..|+..|+||++|
T Consensus       393 ~~~~v~v~GkaaHag~~P~~~r~dAi~aaa~~i~~l~~~~-~~-~-----------~~~v~tVG~i~~~Gg~~NVIP~~a  459 (591)
T PRK13590        393 VRYVGEMIGMASHAGTTPMDRRRDAAAAVAELALYVEQRA-AQ-D-----------GDSVGTVGMLEVPGGSINVVPGRC  459 (591)
T ss_pred             EEEEEEEEeECCCCCCCCchhcccHHHHHHHHHHHHHHHH-hc-C-----------CCcEEEEEEEEECCCCCceECCEE
Confidence            689999999999999644  36899999999999998742 21 1           124678999986577999999999


Q ss_pred             EEEEEEeCCCCCCHHHHHHHHHHHHHHHhhc--cc-ccccccCcccccCCCccccccce-------ee-ecCCCCccccc
Q 029000           80 TVSGDVRLTPFYNVTDVMKRLQEYVDDINEN--IE-KLDTRGPVSKYVLPDENIRGRHV-------LS-LHYLTLGRDDF  148 (200)
Q Consensus        80 ~~~~diR~~~~~~~e~i~~~i~~~~~~~~~~--v~-~~~~~~~~~~~~~~d~~l~~~~~-------~~-~~~~~~~~eDf  148 (200)
                      ++++|+|+++.++.+.+.+++++.+++.+..  ++ ++... ..++++.+|+.+...+.       .. ......|++|+
T Consensus       460 ~~~iDiR~~~~e~~e~v~~~i~~~i~~ia~~~g~~vei~~~-~~~~~~~~d~~lv~~~~~aa~~~G~~~~~~~sggg~Da  538 (591)
T PRK13590        460 RFSLDIRAPTDAQRDAMVADVLAELEAICERRGLRYTLEET-MRAAAAPSAPAWQQRWEAAVAALGLPLFRMPSGAGHDA  538 (591)
T ss_pred             EEEEEeeCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEEe-ecCCCcCCCHHHHHHHHHHHHHcCCCcccCCcchhHHH
Confidence            9999999999999999999898888877543  22 22211 22445566765432211       11 11235678999


Q ss_pred             ccccccc
Q 029000          149 RIFPLRW  155 (200)
Q Consensus       149 ~~~~~~~  155 (200)
                      ++|...+
T Consensus       539 ~~~a~~~  545 (591)
T PRK13590        539 MKLHEIM  545 (591)
T ss_pred             HHHHHHC
Confidence            9997643

>PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional

Probab=99.63  E-value=2.1e-15  Score=137.04  Aligned_cols=142  Identities=17%  Similarity=0.125  Sum_probs=100.6

Q ss_pred             eEEEEEEeeecCCcCCC--CCCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCeE
Q 029000            2 IPWKLHVTGKLFHSGLP--HKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGEC   79 (200)
Q Consensus         2 ~~~~I~v~G~~gHas~P--~~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~a   79 (200)
                      .+++|+++|+++|++.|  +.++||+.++++++..++++..+ .+          ....+.++|.|+.+++..|+||++|
T Consensus       393 ~~~~Itv~GkaaHag~~Pm~~r~dAi~aaa~ii~~l~~~~~~-~~----------~~~~v~tVG~I~~~~ga~NvIP~~a  461 (591)
T PRK13799        393 ARYICEFIGMASHAGTTPMDMRKDAAAAAAEIALYIEKRAAQ-DQ----------HASLVATMGQLNVPSGSTNVIPGRC  461 (591)
T ss_pred             eEEEEEEEEECCCCCCCChhhchhHHHHHHHHHHHHHHHHHh-cC----------CCCcEEEEEEEEecCCCCceECCEE
Confidence            68999999999999964  35899999999999999885322 11          1225788999985556899999999


Q ss_pred             EEEEEEeCCCCCCHHHHHHHHHHHHHHHhhc--cc-ccccccCcccccCCCccccccce-------eee-cCCCCccccc
Q 029000           80 TVSGDVRLTPFYNVTDVMKRLQEYVDDINEN--IE-KLDTRGPVSKYVLPDENIRGRHV-------LSL-HYLTLGRDDF  148 (200)
Q Consensus        80 ~~~~diR~~~~~~~e~i~~~i~~~~~~~~~~--v~-~~~~~~~~~~~~~~d~~l~~~~~-------~~~-~~~~~~~eDf  148 (200)
                      ++++|+|+++.++.+.+.+++++.+++.+..  ++ ++... ...+++.+|+.+...+.       ... ...+.+++|+
T Consensus       462 ~~~~DiR~~~~e~~e~l~~~i~~~i~~ia~~~g~~~ei~~~-~~~~~~~~d~~lv~~~~~a~~~~G~~~~~~~sgag~Da  540 (591)
T PRK13799        462 QFSLDIRAATDEIRDAAVADILAEIAAIAARRGIEYKAELA-MKAAAAPCAPELMKQLEAATDAAGVPLFELASGAGHDA  540 (591)
T ss_pred             EEEEEeeCCCHHHHHHHHHHHHHHHHHHHHHhCCeEEEEEE-ecCCCcCCCHHHHHHHHHHHHHcCCCceecCcchHHHH
Confidence            9999999999999999888888887776543  22 11111 22344666665432211       111 1234678999


Q ss_pred             ccccccc
Q 029000          149 RIFPLRW  155 (200)
Q Consensus       149 ~~~~~~~  155 (200)
                      ++|....
T Consensus       541 ~~~a~~~  547 (591)
T PRK13799        541 MKIAEIM  547 (591)
T ss_pred             HHHHhhC
Confidence            9997654

>TIGR01892 AcOrn-deacetyl acetylornithine deacetylase (ArgE)

Probab=99.61  E-value=6.1e-15  Score=126.08  Aligned_cols=103  Identities=19%  Similarity=0.243  Sum_probs=84.1

Q ss_pred             eEEEEEEeeecCCcCCCCCCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCC-CCceEeeeEEecCCCccceeCCeEE
Q 029000            2 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFE-TPSTMKPTQWSYPGGGINQIPGECT   80 (200)
Q Consensus         2 ~~~~I~v~G~~gHas~P~~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~-~~~t~~~g~i~~gg~~~NviP~~a~   80 (200)
                      ++++|+++|+++|++.|+.|.||+..+++++.+|+++. ..+.....  ...+. ...+++++.++ +|...|+||++|+
T Consensus       169 ~~~~v~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~-~~~~~~~~--~~~~~~~~~~~~i~~i~-gg~~~nviP~~~~  244 (364)
T TIGR01892       169 ASAEVTVRGRSGHSSYPDSGVNAIFRAGRFLQRLVHLA-DTLLREDL--DEGFTPPYTTLNIGVIQ-GGKAVNIIPGACE  244 (364)
T ss_pred             EEEEEEEEcccccccCCccCcCHHHHHHHHHHHHHHHH-HHhccCCC--CccCCCCCceEEEeeee-cCCCCcccCCeEE
Confidence            58999999999999999999999999999999998742 11111000  00011 23689999999 8999999999999


Q ss_pred             EEEEEeCCCCCCHHHHHHHHHHHHHHHh
Q 029000           81 VSGDVRLTPFYNVTDVMKRLQEYVDDIN  108 (200)
Q Consensus        81 ~~~diR~~~~~~~e~i~~~i~~~~~~~~  108 (200)
                      +.+|+|++++++.+++.++|++.+++.+
T Consensus       245 ~~~diR~~p~~~~~~v~~~i~~~~~~~~  272 (364)
T TIGR01892       245 FVFEWRPIPGMDPEELLQLLETIAQALV  272 (364)
T ss_pred             EEEEeecCCCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999998754

This model represents a clade of acetylornithine deacetylases from proteobacteria. This enzyme is the final step of the "acetylated" ornithine biosynthesis pathway. The enzyme is closely related to dapE, succinyl-diaminopimelate desuccinylase, and outside of this clade annotation is very inaccurate as to which function should be ascribed to genes.

>PRK13013 succinyl-diaminopimelate desuccinylase; Reviewed

Probab=99.61  E-value=6.1e-15  Score=128.89  Aligned_cols=107  Identities=13%  Similarity=0.175  Sum_probs=83.4

Q ss_pred             eEEEEEEeeecCCcCCCCCCCCHHHHHHHHHHHHhHhhcccCCCCCC-CccC-CCCCCceEeeeEEecCCCcc-------
Q 029000            2 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPK-EQVY-GFETPSTMKPTQWSYPGGGI-------   72 (200)
Q Consensus         2 ~~~~I~v~G~~gHas~P~~g~NAi~~aa~~l~~l~~~~~~~~~~~~~-~~~~-~~~~~~t~~~g~i~~gg~~~-------   72 (200)
                      ++++|+++|+++|+|.|+.|+||+..+++++.+|++........... .+.. ......+++++.|+ +|...       
T Consensus       201 ~~~~i~v~G~~~H~~~p~~g~nai~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~t~~v~~i~-gG~~~~~~~~~~  279 (427)
T PRK13013        201 WWAEVETRGRIAHGSMPFLGDSAIRHMGAVLAEIEERLFPLLATRRTAMPVVPEGARQSTLNINSIH-GGEPEQDPDYTG  279 (427)
T ss_pred             EEEEEEEEccccccCCCCcCcCHHHHHHHHHHHHHHHhhhhhhcccccCCCCCcccCCCceeeeEEe-CCCccccccccc
Confidence            67999999999999999999999999999999997642111110000 0000 00124688999999 77666       


Q ss_pred             ---ceeCCeEEEEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 029000           73 ---NQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINE  109 (200)
Q Consensus        73 ---NviP~~a~~~~diR~~~~~~~e~i~~~i~~~~~~~~~  109 (200)
                         |+||++|++++|+|++++++.+++.++|++.+++.+.
T Consensus       280 ~~~n~IPd~a~~~idiR~~p~~~~~~v~~~i~~~i~~~~~  319 (427)
T PRK13013        280 LPAPCVADRCRIVIDRRFLIEEDLDEVKAEITALLERLKR  319 (427)
T ss_pred             cccccCCceEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHh
Confidence               9999999999999999999999999999999987643

>TIGR03526 selenium_YgeY putative selenium metabolism hydrolase

Probab=99.61  E-value=5.2e-15  Score=128.34  Aligned_cols=99  Identities=17%  Similarity=0.167  Sum_probs=81.3

Q ss_pred             eEEEEEEeeecCCcCCCCCCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCeEEE
Q 029000            2 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTV   81 (200)
Q Consensus         2 ~~~~I~v~G~~gHas~P~~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~a~~   81 (200)
                      ++++|+++|+++|+|.|+.|+|||..+++++.+|++.. ..+...      .+....++++|.|+.+++..|+||++|++
T Consensus       182 ~~~~v~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~-~~~~~~------~~~~~~~~~v~~i~~g~~~~nviP~~~~~  254 (395)
T TIGR03526       182 MEIKVTVKGVSCHGSAPERGDNAIYKMAPILKELSQLN-ANLVED------PFLGKGTLTVSEIFFSSPSRCAVADGCTI  254 (395)
T ss_pred             EEEEEEEecCCCccCCCCCCCCHHHHHHHHHHHHHHhh-hhhcCC------cccCccceeeeeeecCCCCCCccCCeEEE
Confidence            68999999999999999999999999999999998742 211100      01223688999998333489999999999


Q ss_pred             EEEEeCCCCCCHHHHHHHHHHHHHHH
Q 029000           82 SGDVRLTPFYNVTDVMKRLQEYVDDI  107 (200)
Q Consensus        82 ~~diR~~~~~~~e~i~~~i~~~~~~~  107 (200)
                      ++|+|++++++.+++.++|++.++..
T Consensus       255 ~~d~R~~~~~~~~~~~~~i~~~~~~~  280 (395)
T TIGR03526       255 SIDRRLTWGETWEYALEQIRNLPAVQ  280 (395)
T ss_pred             EEEEecCCCCCHHHHHHHHHHHHHhc
Confidence            99999999999999999999987653

SelD, selenophosphate synthase, is the selenium donor protein for both selenocysteine and selenouridine biosynthesis systems, but it occurs also in a few prokaryotes that have neither of those pathways. The method of partial phylogenetic profiling, starting from such orphan-selD genomes, identifies this protein as one of those most strongly correlated to SelD occurrence. Its distribution is also well correlated with that of family TIGR03309, a putative accessory protein of labile selenium (non-selenocysteine) enzyme maturation. This family includes the uncharacterized YgeY of Escherichia coli, and belongs to a larger family of metalloenzymes in which some are known peptidases, others enzymes of different types.

>PRK05111 acetylornithine deacetylase; Provisional

Probab=99.60  E-value=7.7e-15  Score=126.49  Aligned_cols=106  Identities=20%  Similarity=0.277  Sum_probs=85.1

Q ss_pred             eEEEEEEeeecCCcCCCCCCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCeEEE
Q 029000            2 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTV   81 (200)
Q Consensus         2 ~~~~I~v~G~~gHas~P~~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~a~~   81 (200)
                      ++++|+++|+++|+|.|+.|.||+..+++++.+++.+. ..+......+... ....+++++.|+ +|...|+||++|++
T Consensus       182 ~~~~i~v~G~~~H~~~p~~g~nai~~~~~~i~~l~~~~-~~~~~~~~~~~~~-~~~~t~~i~~i~-gg~~~NvVP~~~~~  258 (383)
T PRK05111        182 MSEAIRITGQSGHSSDPALGVNAIELMHDVIGELLQLR-DELQERYHNPAFT-VPYPTLNLGHIH-GGDAPNRICGCCEL  258 (383)
T ss_pred             EEEEEEEEeechhccCCccCcCHHHHHHHHHHHHHHHH-HHHhccCCCccCC-CCCCceeEeeee-cCCcCcccCCceEE
Confidence            68999999999999999999999999999999998642 1111110001101 124689999999 89999999999999


Q ss_pred             EEEEeCCCCCCHHHHHHHHHHHHHHHhhc
Q 029000           82 SGDVRLTPFYNVTDVMKRLQEYVDDINEN  110 (200)
Q Consensus        82 ~~diR~~~~~~~e~i~~~i~~~~~~~~~~  110 (200)
                      .+|+|++++++.+++.++|++.+++.+..
T Consensus       259 ~~diR~~p~~~~~~v~~~i~~~i~~~~~~  287 (383)
T PRK05111        259 HFDIRPLPGMTLEDLRGLLREALAPVSER  287 (383)
T ss_pred             EEEEecCCCCCHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999876543

>PRK00466 acetyl-lysine deacetylase; Validated

Probab=99.60  E-value=4.1e-15  Score=126.83  Aligned_cols=144  Identities=14%  Similarity=0.142  Sum_probs=101.9

Q ss_pred             eEEEEEEeeecCCcCCCCCCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCeEEE
Q 029000            2 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTV   81 (200)
Q Consensus         2 ~~~~I~v~G~~gHas~P~~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~a~~   81 (200)
                      ++++|+++|+++|||.|+  .||+..+++++.++.+. ...            ....++++|.++ +|...|+||++|++
T Consensus       161 ~~~~i~v~G~~~Has~p~--~nAi~~~~~~l~~l~~~-~~~------------~~~~t~~~~~i~-gG~~~NvvP~~a~~  224 (346)
T PRK00466        161 IQLDIMCEGTPEHSSSAK--SNLIVDISKKIIEVYKQ-PEN------------YDKPSIVPTIIR-AGESYNVTPAKLYL  224 (346)
T ss_pred             EEEEEEEEeeccccCCCC--cCHHHHHHHHHHHHHhc-ccc------------CCCCcceeeEEe-cCCcCcccCCceEE
Confidence            689999999999999986  59999999999988653 111            123578999999 89999999999999


Q ss_pred             EEEEeCCCCCCHHHHHHHHHHHHHHHhhcccccccccCcccccCCCccccccceee---ecC-----CCCcccccccccc
Q 029000           82 SGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGRHVLS---LHY-----LTLGRDDFRIFPL  153 (200)
Q Consensus        82 ~~diR~~~~~~~e~i~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~~l~~~~~~~---~~~-----~~~~~eDf~~~~~  153 (200)
                      ++|+|++++++.+++.++|++.+++.  +++...  ..++.+.+.|+++...+...   .+.     ...|+-|.++|..
T Consensus       225 ~~diR~~p~~~~~~v~~~i~~~~~~~--~~~~~~--~~~~~~~~~~~~lv~~l~~a~~~~g~~~~~~~~~g~tD~~~~~~  300 (346)
T PRK00466        225 HFDVRYAINNKRDDLISEIKDKFQEC--GLKIVD--ETPPVKVSINNPVVKALMRALLKQNIKPRLVRKAGTSDMNILQK  300 (346)
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHhhC--cEeecc--CCCCcccCCCCHHHHHHHHHHHHhCCCceEEecCCcCcHHHHHH
Confidence            99999999999999999999988752  222111  12233455556543322110   010     1235678888865


Q ss_pred             cccccccccccee
Q 029000          154 RWQRHKIKFGRLK  166 (200)
Q Consensus       154 ~~~~~~~~fG~~~  166 (200)
                      .. ...+.|||+.
T Consensus       301 ~~-~~~v~fGpg~  312 (346)
T PRK00466        301 IT-TSIATYGPGN  312 (346)
T ss_pred             hC-CCEEEECCCC
Confidence            43 4556788754

>PRK07522 acetylornithine deacetylase; Provisional

Probab=99.60  E-value=8.8e-15  Score=126.14  Aligned_cols=102  Identities=20%  Similarity=0.331  Sum_probs=82.6

Q ss_pred             eEEEEEEeeecCCcCCCCCCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCC-CCceEeeeEEecCCCccceeCCeEE
Q 029000            2 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFE-TPSTMKPTQWSYPGGGINQIPGECT   80 (200)
Q Consensus         2 ~~~~I~v~G~~gHas~P~~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~-~~~t~~~g~i~~gg~~~NviP~~a~   80 (200)
                      .+++|+++|+++|+|.|+.|.||+..+++++..|++.. ..+....+ ....+. ...+++++.++ +|...|+||++|+
T Consensus       178 ~~~~i~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~-~~~~~~~~-~~~~~~~~~~t~~i~~i~-gG~~~nviP~~a~  254 (385)
T PRK07522        178 AAYRCTVRGRAAHSSLAPQGVNAIEYAARLIAHLRDLA-DRLAAPGP-FDALFDPPYSTLQTGTIQ-GGTALNIVPAECE  254 (385)
T ss_pred             EEEEEEEEeeccccCCCccCcCHHHHHHHHHHHHHHHH-HHHhhcCC-CCcCCCCCcceeEEeeee-cCccccccCCceE
Confidence            58999999999999999999999999999999998752 11110000 000011 12578999999 8999999999999


Q ss_pred             EEEEEeCCCCCCHHHHHHHHHHHHHH
Q 029000           81 VSGDVRLTPFYNVTDVMKRLQEYVDD  106 (200)
Q Consensus        81 ~~~diR~~~~~~~e~i~~~i~~~~~~  106 (200)
                      +.+|+|+++.++.+++.++|++.+++
T Consensus       255 ~~~diR~~~~~~~~~i~~~i~~~i~~  280 (385)
T PRK07522        255 FDFEFRNLPGDDPEAILARIRAYAEA  280 (385)
T ss_pred             EEEEEccCCCCCHHHHHHHHHHHHHh
Confidence            99999999999999999999999877

>TIGR03320 ygeY M20/DapE family protein YgeY

Probab=99.59  E-value=1.5e-14  Score=125.33  Aligned_cols=99  Identities=17%  Similarity=0.167  Sum_probs=81.1

Q ss_pred             eEEEEEEeeecCCcCCCCCCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCeEEE
Q 029000            2 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTV   81 (200)
Q Consensus         2 ~~~~I~v~G~~gHas~P~~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~a~~   81 (200)
                      ++++|+++|+++|+|.|+.|.||+..+++++..|++.. ......      ......++++|.|+.++...|+||++|++
T Consensus       182 ~~~~v~~~G~~~Hss~p~~g~nAi~~~~~~l~~l~~~~-~~~~~~------~~~~~~t~~v~~i~~g~~~~NviP~~~~~  254 (395)
T TIGR03320       182 MEIKVTVKGVSCHGSAPERGDNAIYKMAPILKELSQLN-ANLVED------PFLGKGTLTVSEIFFSSPSRCAVADGCTI  254 (395)
T ss_pred             EEEEEEEeeeccccCCCCCCCCHHHHHHHHHHHHHHHH-HhhcCC------cccCcCceeeeeeecCCCCcCccCCEEEE
Confidence            68999999999999999999999999999999998742 111100      01223588899999333489999999999


Q ss_pred             EEEEeCCCCCCHHHHHHHHHHHHHHH
Q 029000           82 SGDVRLTPFYNVTDVMKRLQEYVDDI  107 (200)
Q Consensus        82 ~~diR~~~~~~~e~i~~~i~~~~~~~  107 (200)
                      .+|+|++++++.+++.++|++.+...
T Consensus       255 ~~diR~~p~~~~~~i~~~i~~~~~~~  280 (395)
T TIGR03320       255 SIDRRLTWGETWEYALEQIRNLPAVQ  280 (395)
T ss_pred             EEEEecCCCCCHHHHHHHHHHHHhhc
Confidence            99999999999999999999987653

Members of this protein family, including the YgeY protein of Escherichia coli, typically are found in extended genomic regions associated with purine catabolism. Homologs include peptidases and deacylases of the M20/M25 /M40 and DapE/ArgE families. The function is unknown.

>PRK08652 acetylornithine deacetylase; Provisional

Probab=99.59  E-value=6.4e-15  Score=125.18  Aligned_cols=116  Identities=23%  Similarity=0.312  Sum_probs=88.4

Q ss_pred             eEEEEEEeeecCCcCCCCCCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCeEEE
Q 029000            2 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTV   81 (200)
Q Consensus         2 ~~~~I~v~G~~gHas~P~~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~a~~   81 (200)
                      ++++|+++|+++|+|.|+.|.||+.++++++.+|+++. ......       + . .+++++.++ +|...|++|++|++
T Consensus       156 ~~~~i~~~G~~~H~s~p~~g~nAi~~~a~~i~~l~~~~-~~~~~~-------~-~-~~~~~~~i~-gg~~~nviP~~~~~  224 (347)
T PRK08652        156 LEAYVEVKGKPSHGACPESGVNAIEKAFEMLEKLKELL-KALGKY-------F-D-PHIGIQEII-GGSPEYSIPALCRL  224 (347)
T ss_pred             EEEEEEEEeeecccCCCCcCcCHHHHHHHHHHHHHHHH-Hhhhcc-------c-C-CCCcceeee-cCCCCCccCCcEEE
Confidence            68999999999999999999999999999999998752 211100       1 1 245667788 88899999999999


Q ss_pred             EEEEeCCCCCCHHHHHHHHHHHHHHHhhcccccccccCcccccCCCccc
Q 029000           82 SGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENI  130 (200)
Q Consensus        82 ~~diR~~~~~~~e~i~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~~l  130 (200)
                      ++|+|+++.++.+++.+++++.+++...+++ +... .++.+.++|+++
T Consensus       225 ~~diR~~~~~~~~~v~~~i~~~~~~~~v~~~-~~~~-~~~~~~~~~~~l  271 (347)
T PRK08652        225 RLDARIPPEVEVEDVLDEIDPILDEYTVKYE-YTEI-WDGFELDEDEEI  271 (347)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHhcCceEE-Eecc-CCcccCCCCCHH
Confidence            9999999999999999999999976544433 1111 123345566654

>PRK06837 acetylornithine deacetylase; Provisional

Probab=99.58  E-value=1.1e-14  Score=127.56  Aligned_cols=163  Identities=12%  Similarity=0.192  Sum_probs=108.2

Q ss_pred             eEEEEEEeeecCCcCCCCCCCCHHHHHHHHHHHHhHhhcccCCCCC-CCccC-CCCCCceEeeeEEecCCCccceeCCeE
Q 029000            2 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHP-KEQVY-GFETPSTMKPTQWSYPGGGINQIPGEC   79 (200)
Q Consensus         2 ~~~~I~v~G~~gHas~P~~g~NAi~~aa~~l~~l~~~~~~~~~~~~-~~~~~-~~~~~~t~~~g~i~~gg~~~NviP~~a   79 (200)
                      ++++|+++|+++|+|.|+.|.||+..+++++.+|++.. ..+.... ..+.. +...+.+++++.|+ +|...|+||++|
T Consensus       210 ~~~~i~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~-~~~~~~~~~~~~~~~~~~~~t~ni~~i~-gG~~~nvVP~~~  287 (427)
T PRK06837        210 IWFRLRVRGAPVHVREAGTGANAIDAAYHLIQALRELE-AEWNARKASDPHFEDVPHPINFNVGIIK-GGDWASSVPAWC  287 (427)
T ss_pred             EEEEEEEEeeccccCCcccCcCHHHHHHHHHHHHHHHH-HHHhhcccCCCcccCCCCceeEeeeeEe-CCCCCCccCCEE
Confidence            68999999999999999999999999999999998742 1111100 00000 11234588999999 899999999999


Q ss_pred             EEEEEEeCCCCCCHHHHHHHHHHHHHHHhhccc-------ccc--cccCcccccCCCccccccc----eeeec-----CC
Q 029000           80 TVSGDVRLTPFYNVTDVMKRLQEYVDDINENIE-------KLD--TRGPVSKYVLPDENIRGRH----VLSLH-----YL  141 (200)
Q Consensus        80 ~~~~diR~~~~~~~e~i~~~i~~~~~~~~~~v~-------~~~--~~~~~~~~~~~d~~l~~~~----~~~~~-----~~  141 (200)
                      ++.+++|+.|+++.+++.++|++.+++...+..       .+.  ....++...+.|+++...+    ...++     ..
T Consensus       288 ~~~~~ir~~p~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~a~~~~~g~~~~~~~  367 (427)
T PRK06837        288 DLDCRIAIYPGVTAADAQAEIEACLAAAARDDRFLSNNPPEVVWSGFLAEGYVLEPGSEAEAALARAHAAVFGGPLRSFV  367 (427)
T ss_pred             EEEEEEeECCCCCHHHHHHHHHHHHHHHHhcChhhhhCCCeEEEEecccCCcCCCCCCHHHHHHHHHHHHHhCCCCeeeE
Confidence            999999999999999999999999987543310       111  1112223444555533221    11111     12


Q ss_pred             CCcccccccccccccccccccccee
Q 029000          142 TLGRDDFRIFPLRWQRHKIKFGRLK  166 (200)
Q Consensus       142 ~~~~eDf~~~~~~~~~~~~~fG~~~  166 (200)
                      ..|+.|.+++........+.|||+.
T Consensus       368 ~~g~tDa~~~~~~~gip~v~~Gp~~  392 (427)
T PRK06837        368 TTAYTDTRFYGLYYGIPALCYGPSG  392 (427)
T ss_pred             EeeccchHHHhccCCCCEEEECCCC
Confidence            3467888888643333345688864

>PRK08262 hypothetical protein; Provisional

Probab=99.56  E-value=1.1e-14  Score=129.42  Aligned_cols=152  Identities=19%  Similarity=0.161  Sum_probs=102.4

Q ss_pred             eEEEEEEeeecCCcCCCCCCCCHHHHHHHHHHHHhHhhcc-cCC-----------CC---------------CC------
Q 029000            2 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYK-DFP-----------PH---------------PK------   48 (200)
Q Consensus         2 ~~~~I~v~G~~gHas~P~~g~NAi~~aa~~l~~l~~~~~~-~~~-----------~~---------------~~------   48 (200)
                      ++++|+++|+++|||.|+. .||+..+++++.+|++.... .+.           ..               ..      
T Consensus       242 ~~~~i~v~G~~~Hss~p~~-~nai~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (486)
T PRK08262        242 ATLELTARATGGHSSMPPR-QTAIGRLARALTRLEDNPLPMRLRGPVAEMFDTLAPEMSFAQRVVLANLWLFEPLLLRVL  320 (486)
T ss_pred             EEEEEEEecCCCCCCCCCC-CCHHHHHHHHHHHHhhCCCCCccChHHHHHHHHHHHhcCHHHHHHhhcccchhhHHHHHH
Confidence            6889999999999999999 99999999999999763100 000           00               00      


Q ss_pred             --CccCCCCCCceEeeeEEecCCCccceeCCeEEEEEEEeCCCCCCHHHHHHHHHHHHHHHhhcccccccccCcccccCC
Q 029000           49 --EQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLP  126 (200)
Q Consensus        49 --~~~~~~~~~~t~~~g~i~~gg~~~NviP~~a~~~~diR~~~~~~~e~i~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~  126 (200)
                        ..........+++++.|+ ||...|+||++|++.+|+|++++++.+++.++|++.+++...+++.......++.+++.
T Consensus       321 ~~~~~~~~~~~~t~~i~~I~-gG~~~NvIP~~a~~~~diR~~p~~~~~~i~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~  399 (486)
T PRK08262        321 AKSPETAAMLRTTTAPTMLK-GSPKDNVLPQRATATVNFRILPGDSVESVLAHVRRAVADDRVEIEVLGGNSEPSPVSST  399 (486)
T ss_pred             hcCCccceeEEeeeeeeEEe-cCCccccCCCccEEEEEEEeCCCCCHHHHHHHHHHHhccCceEEEEecCCCCCCCCCCC
Confidence              000001124688999999 88899999999999999999999999999999999987653333311111122344556


Q ss_pred             Cccccccc----eeeec------CCCCcccccccccccc
Q 029000          127 DENIRGRH----VLSLH------YLTLGRDDFRIFPLRW  155 (200)
Q Consensus       127 d~~l~~~~----~~~~~------~~~~~~eDf~~~~~~~  155 (200)
                      |+++...+    ...++      ....|++|+++|...+
T Consensus       400 ~~~lv~~l~~a~~~~~g~~~~~~~~~~g~tDa~~~~~~~  438 (486)
T PRK08262        400 DSAAYKLLAATIREVFPDVVVAPYLVVGATDSRHYSGIS  438 (486)
T ss_pred             CCHHHHHHHHHHHHHCCCCccccceecccccHHHHHHhc
Confidence            66543221    11121      1245789999987543

>TIGR01900 dapE-gram_pos succinyl-diaminopimelate desuccinylase

Probab=99.55  E-value=6.8e-14  Score=120.64  Aligned_cols=96  Identities=16%  Similarity=0.185  Sum_probs=79.9

Q ss_pred             eEEEEEEeeecCCcCCCCCCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCeEEE
Q 029000            2 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTV   81 (200)
Q Consensus         2 ~~~~I~v~G~~gHas~P~~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~a~~   81 (200)
                      ++++|+++|+++|+|.|+.|.||+..+++++.+|+++........      +.....+++++.|+ ||...|+||++|++
T Consensus       182 ~~~~i~v~G~~~H~s~p~~g~NAi~~~~~~i~~l~~l~~~~~~~~------~~~~~~t~~v~~I~-GG~~~nvVP~~a~~  254 (373)
T TIGR01900       182 IRFDVTAHGVAAHSARAWLGDNAIHKAADIINKLAAYEAAEVNID------GLDYREGLNATFCE-GGKANNVIPDEARM  254 (373)
T ss_pred             EEEEEEEEeeccccCCCCCCCCHHHHHHHHHHHHHHhhccccccc------CCcccceEEEEEEe-CCCCCcccCCeEEE
Confidence            689999999999999999999999999999999987421111100      01123578999999 89999999999999


Q ss_pred             EEEEeCCCCCCHHHHHHHHHHHH
Q 029000           82 SGDVRLTPFYNVTDVMKRLQEYV  104 (200)
Q Consensus        82 ~~diR~~~~~~~e~i~~~i~~~~  104 (200)
                      .+|+|++|+++.+++.++|++.+
T Consensus       255 ~~diR~~p~~~~e~~~~~i~~~~  277 (373)
T TIGR01900       255 HLNFRFAPDKDLAEAKALMMGAD  277 (373)
T ss_pred             EEEEecCCCcCHHHHHHHHHhhh
Confidence            99999999999999999997654

This enzyme is involved in the biosynthesis of lysine, and is related to the enzyme acetylornithine deacetylase and other amidases and peptidases found within pfam01546.

>PRK13983 diaminopimelate aminotransferase; Provisional

Probab=99.55  E-value=2.7e-14  Score=123.57  Aligned_cols=105  Identities=27%  Similarity=0.405  Sum_probs=81.8

Q ss_pred             eEEEEEEeeecCCcCCCCCCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCeEEE
Q 029000            2 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTV   81 (200)
Q Consensus         2 ~~~~I~v~G~~gHas~P~~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~a~~   81 (200)
                      ++++|+++|+++|+|.|+.|+||+..+++++..+++.+...+....+  ..+ ....+++++.+..++...|+||++|++
T Consensus       197 ~~~~v~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~g~~~~nvvp~~~~~  273 (400)
T PRK13983        197 LWLKFTVKGKQCHASTPENGINAHRAAADFALELDEALHEKFNAKDP--LFD-PPYSTFEPTKKEANVDNINTIPGRDVF  273 (400)
T ss_pred             EEEEEEEEeEccccCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccc--ccC-CCCcccccceeecCCcCCcccCCeeEE
Confidence            68999999999999999999999999999999998732222221100  000 011356678887334689999999999


Q ss_pred             EEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 029000           82 SGDVRLTPFYNVTDVMKRLQEYVDDINE  109 (200)
Q Consensus        82 ~~diR~~~~~~~e~i~~~i~~~~~~~~~  109 (200)
                      ++|+|++++++.+++.++|++.+++.+.
T Consensus       274 ~~diR~~p~~~~~~v~~~l~~~~~~~~~  301 (400)
T PRK13983        274 YFDCRVLPDYDLDEVLKDIKEIADEFEE  301 (400)
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHHhcc
Confidence            9999999999999999999999987643

>PRK13004 peptidase; Reviewed

Probab=99.53  E-value=6.3e-14  Score=121.71  Aligned_cols=97  Identities=15%  Similarity=0.197  Sum_probs=79.7

Q ss_pred             eEEEEEEeeecCCcCCCCCCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCeEEE
Q 029000            2 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTV   81 (200)
Q Consensus         2 ~~~~I~v~G~~gHas~P~~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~a~~   81 (200)
                      ++++|+++|+++|++.|+.|.||+..+++++..|+.. ...+...      ......+++++.+..++...|++|++|++
T Consensus       184 ~~~~v~v~G~~~Ha~~p~~g~nAi~~~~~~i~~l~~~-~~~~~~~------~~~~~~~~~v~~i~~g~~~~nvvP~~~~~  256 (399)
T PRK13004        184 MEIRVETKGVSCHGSAPERGDNAIYKMAPILNELEEL-NPNLKED------PFLGKGTLTVSDIFSTSPSRCAVPDSCAI  256 (399)
T ss_pred             EEEEEEEeccccccCCCCCCCCHHHHHHHHHHHHHhh-ccccccC------CcCCCceEEEeeeecCCCCCCccCCEEEE
Confidence            6899999999999999999999999999999999874 2111110      11223578899998444689999999999


Q ss_pred             EEEEeCCCCCCHHHHHHHHHHHHH
Q 029000           82 SGDVRLTPFYNVTDVMKRLQEYVD  105 (200)
Q Consensus        82 ~~diR~~~~~~~e~i~~~i~~~~~  105 (200)
                      .+|+|+++.++.+++.++++++.+
T Consensus       257 ~~diR~~~~~~~~~v~~~i~~~~~  280 (399)
T PRK13004        257 SIDRRLTVGETWESVLAEIRALPA  280 (399)
T ss_pred             EEEEcCCCCCCHHHHHHHHHHHHh
Confidence            999999999999999999999844

>TIGR01883 PepT-like peptidase T-like protein

Probab=99.53  E-value=2.2e-14  Score=122.71  Aligned_cols=93  Identities=18%  Similarity=0.308  Sum_probs=79.2

Q ss_pred             eEEEEEEeeecCCcC-CCCCCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCeEE
Q 029000            2 IPWKLHVTGKLFHSG-LPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECT   80 (200)
Q Consensus         2 ~~~~I~v~G~~gHas-~P~~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~a~   80 (200)
                      ++++++++|+++|++ .|+.|+||+..+++++.++...   .++           ...++++|.++ +|...|+||++|+
T Consensus       173 ~~~~i~~~G~~~Ha~~~p~~g~nAi~~~~~~i~~l~~~---~~~-----------~~~~~~i~~i~-gG~~~nvVP~~~~  237 (361)
T TIGR01883       173 VKVDATIAGKDAHAGLVPEDGISAISVARMAIHAMRLG---RID-----------EETTANIGSFS-GGVNTNIVQDEQL  237 (361)
T ss_pred             EEEEEEEEeeecCCCCCcccCcCHHHHHHHHHHhcccc---CCC-----------Cccccccceee-cCCccCccCCceE
Confidence            589999999999985 7999999999999999887542   111           12567889999 9999999999999


Q ss_pred             EEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 029000           81 VSGDVRLTPFYNVTDVMKRLQEYVDDINE  109 (200)
Q Consensus        81 ~~~diR~~~~~~~e~i~~~i~~~~~~~~~  109 (200)
                      +.+|+|+++.++.+.+.++|++.+++.+.
T Consensus       238 ~~~diR~~~~~~~~~~~~~i~~~i~~~~~  266 (361)
T TIGR01883       238 IVAEARSLSFRKAEAQVQTMRERFEQAAE  266 (361)
T ss_pred             EEEEEecCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999988999888876543

This model represents a clade of enzymes closely related to Peptidase T, an aminotripeptidase found in bacteria. This clade consists of gram positive bacteria of which several additionally contain a Peptidase T gene.

>PRK07338 hypothetical protein; Provisional

Probab=99.49  E-value=1.6e-13  Score=119.13  Aligned_cols=93  Identities=17%  Similarity=0.230  Sum_probs=82.7

Q ss_pred             eEEEEEEeeecCCcCC-CCCCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCeEE
Q 029000            2 IPWKLHVTGKLFHSGL-PHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECT   80 (200)
Q Consensus         2 ~~~~I~v~G~~gHas~-P~~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~a~   80 (200)
                      ++++|+++|+++|+|. |+.|.||+..+++++.+|++. .+.            ....++++|.|+ +|...|+||++|+
T Consensus       204 ~~~~v~v~G~~aHs~~~p~~g~nAi~~~~~~i~~l~~l-~~~------------~~~~t~~vg~i~-gG~~~nvVP~~a~  269 (402)
T PRK07338        204 GNFTIVVTGRAAHAGRAFDEGRNAIVAAAELALALHAL-NGQ------------RDGVTVNVAKID-GGGPLNVVPDNAV  269 (402)
T ss_pred             EEEEEEEEeEcccCCCCcccCccHHHHHHHHHHHHHhh-hcc------------CCCcEEEEEEEe-cCCCCceeccccE
Confidence            6899999999999995 899999999999999999874 221            123689999999 8999999999999


Q ss_pred             EEEEEeCCCCCCHHHHHHHHHHHHHHHh
Q 029000           81 VSGDVRLTPFYNVTDVMKRLQEYVDDIN  108 (200)
Q Consensus        81 ~~~diR~~~~~~~e~i~~~i~~~~~~~~  108 (200)
                      +++|+|+.++++.+++.++|++.+++.+
T Consensus       270 ~~~d~R~~~~~~~~~v~~~i~~~~~~~~  297 (402)
T PRK07338        270 LRFNIRPPTPEDAAWAEAELKKLIAQVN  297 (402)
T ss_pred             EEEEeccCCHHHHHHHHHHHHHHHhccc
Confidence            9999999999999999999999998764

>TIGR01880 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase

Probab=99.47  E-value=2.4e-13  Score=117.99  Aligned_cols=102  Identities=18%  Similarity=0.179  Sum_probs=80.6

Q ss_pred             eEEEEEEeeecCCcCCCCCCCCHHHHHHHHHHHHhHhhc---ccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCe
Q 029000            2 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFY---KDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGE   78 (200)
Q Consensus         2 ~~~~I~v~G~~gHas~P~~g~NAi~~aa~~l~~l~~~~~---~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~   78 (200)
                      ++++|+++|+++|||.|. +.||+..+++++..|+++..   ..+...   +.......+++++|.++ ||...|+||++
T Consensus       193 ~~~~l~v~G~~~Hs~~~~-~~nai~~l~~~i~~l~~~~~~~~~~~~~~---~~~~~~~~~t~~v~~i~-gG~~~nvIP~~  267 (400)
T TIGR01880       193 WWVVVTAPGNPGHGSKLM-ENTAMEKLEKSVESIRRFRESQFQLLQSN---PDLAIGDVTSVNLTKLK-GGVQSNVIPSE  267 (400)
T ss_pred             EEEEEEEecCCCCCCCCC-CCCHHHHHHHHHHHHHHhhHHHHHHHhcC---ccccccccceeecceec-cCCcCCcCCCc
Confidence            689999999999999875 47999999999988876311   101110   00111123689999999 89999999999


Q ss_pred             EEEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Q 029000           79 CTVSGDVRLTPFYNVTDVMKRLQEYVDDIN  108 (200)
Q Consensus        79 a~~~~diR~~~~~~~e~i~~~i~~~~~~~~  108 (200)
                      |++.+|+|+++.++.+++.++|++.+++..
T Consensus       268 a~~~~diR~~p~~~~~~~~~~i~~~i~~~~  297 (400)
T TIGR01880       268 AEAGFDIRLAPSVDFEEMENRLDEWCADAG  297 (400)
T ss_pred             cEEEEEEeeCCCCCHHHHHHHHHHHHhccC
Confidence            999999999999999999999999998753

This model represents a family of eukaryotic N-acyl-L-amino-acid amidohydrolases active on fatty acid and acetyl amides of L-amino acids.

>TIGR01902 dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine deacetylase

Probab=99.45  E-value=4.9e-13  Score=113.56  Aligned_cols=146  Identities=18%  Similarity=0.210  Sum_probs=96.1

Q ss_pred             eEEEEEEeeecCCcCCCCCCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCeEEE
Q 029000            2 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTV   81 (200)
Q Consensus         2 ~~~~I~v~G~~gHas~P~~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~a~~   81 (200)
                      ++++++++|+++|+|.|.   ||+..+..++..|.+.+.....          ....+++++.++ +|...|+||++|++
T Consensus       150 ~~~~v~~~G~~~Hss~~~---~ai~~~~~~~~~l~~~~~~~~~----------~~~~~~~~~~i~-gg~~~nvIP~~a~~  215 (336)
T TIGR01902       150 LQLKIMCEGTPFHSSSAG---NAAELLIDYSKKIIEVYKQPEN----------YDKPSIVPTIIR-FGESYNDTPAKLEL  215 (336)
T ss_pred             EEEEEEEEecCcccCCCh---hHHHHHHHHHHHHHHHhccccC----------CCCCcceeEEEE-ccCCCcCCCceEEE
Confidence            689999999999999885   4899999999988742222111          112467788888 89999999999999


Q ss_pred             EEEEeCCCCCCHHHHHHHHHHHHHHHhhcccccccccCcccccCCCccccccc----eeeec----CCCCcccccccccc
Q 029000           82 SGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGRH----VLSLH----YLTLGRDDFRIFPL  153 (200)
Q Consensus        82 ~~diR~~~~~~~e~i~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~~l~~~~----~~~~~----~~~~~~eDf~~~~~  153 (200)
                      ++|+|++++++.+++.++|++.   ...+++..  ...++...+.|+++...+    .....    ....|+-|.++|..
T Consensus       216 ~idiR~~p~~~~~~~~~~i~~~---~~~~~~~~--~~~~p~~~~~~~~lv~~~~~a~~~~~~~~~~~~~~g~tD~~~~~~  290 (336)
T TIGR01902       216 HFDLRYPPNNKPEEAIKEITDK---FPICLEIV--DETPPYKVSRNNPLVRAFVRAIRKQGMKPRLKKKTGTSDMNILAP  290 (336)
T ss_pred             EEEEeeCCCCCHHHHHHHHHhc---cCceEEEE--eccCceecCCCCHHHHHHHHHHHHcCCCeEEeeccccCccceecc
Confidence            9999999999999998888761   11222211  112223345666543221    10100    11235678888865


Q ss_pred             cccccccccccee
Q 029000          154 RWQRHKIKFGRLK  166 (200)
Q Consensus       154 ~~~~~~~~fG~~~  166 (200)
                      .+....+.|||+.
T Consensus       291 ~~g~p~v~~Gpg~  303 (336)
T TIGR01902       291 IWTVPMVAYGPGD  303 (336)
T ss_pred             ccCCCeEEECCCC
Confidence            4444555677664

This clade of mainly archaeal and related bacterial species contains two characterized enzymes, an deacetylase with specificity for both N-acetyl-ornithine and N-acetyl-lysine from Thermus which is found within a lysine biosynthesis operon, and a fusion protein with acetyl-glutamate kinase (an enzyme of ornithine biosynthesis) from Lactobacillus. It is possible that all of the sequences within this clade have dual specificity, or that a mix of specificities have evolved within this clade.

>PRK06133 glutamate carboxypeptidase; Reviewed

Probab=99.43  E-value=8.1e-13  Score=115.27  Aligned_cols=91  Identities=24%  Similarity=0.201  Sum_probs=80.6

Q ss_pred             eEEEEEEeeecCCc-CCCCCCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCeEE
Q 029000            2 IPWKLHVTGKLFHS-GLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECT   80 (200)
Q Consensus         2 ~~~~I~v~G~~gHa-s~P~~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~a~   80 (200)
                      ++++++++|+++|+ +.|+.|+||+..+++++..|++.. ..            ....+++++.++ +|...|+||++|+
T Consensus       211 ~~~~v~v~G~~~Hsg~~p~~g~nAi~~~~~~i~~l~~~~-~~------------~~~~t~~~~~i~-gG~~~nvIP~~~~  276 (410)
T PRK06133        211 ATALLEVKGKASHAGAAPELGRNALYELAHQLLQLRDLG-DP------------AKGTTLNWTVAK-AGTNRNVIPASAS  276 (410)
T ss_pred             EEEEEEEEeeccccCCCcccCcCHHHHHHHHHHHHHhcc-CC------------CCCeEEEeeEEE-CCCCCceeCCccE
Confidence            68999999999997 489999999999999999987741 11            123678999999 8999999999999


Q ss_pred             EEEEEeCCCCCCHHHHHHHHHHHHHH
Q 029000           81 VSGDVRLTPFYNVTDVMKRLQEYVDD  106 (200)
Q Consensus        81 ~~~diR~~~~~~~e~i~~~i~~~~~~  106 (200)
                      +.+|+|+++.++.+++.++|++.+++
T Consensus       277 ~~~diR~~~~~~~~~v~~~i~~~~~~  302 (410)
T PRK06133        277 AQADVRYLDPAEFDRLEADLQEKVKN  302 (410)
T ss_pred             EEEEEEECCHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999987

>TIGR01886 dipeptidase dipeptidase PepV

Probab=99.43  E-value=9e-13  Score=116.84  Aligned_cols=144  Identities=13%  Similarity=0.042  Sum_probs=91.0

Q ss_pred             EEEEEEeeecCCcCCCCCCCCHHHHHHHHHHHH----------h---HhhcccCCC-CCC-CccCCCCCCceEeeeEEec
Q 029000            3 PWKLHVTGKLFHSGLPHKAINPLELAMEALKVI----------Q---TRFYKDFPP-HPK-EQVYGFETPSTMKPTQWSY   67 (200)
Q Consensus         3 ~~~I~v~G~~gHas~P~~g~NAi~~aa~~l~~l----------~---~~~~~~~~~-~~~-~~~~~~~~~~t~~~g~i~~   67 (200)
                      |++|+++|+++|||.|+.|+|||..|++++..+          +   +........ ... ..........++++|.|+ 
T Consensus       256 ~~~i~v~G~~aH~s~P~~G~NAi~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~S~nvgvI~-  334 (466)
T TIGR01886       256 SATIVLIGKGAHGAAPQVGINSATFLALFLNQYAFAGGAKNFIHFLAEVEHEDFYGEKLGIAFHDELMGDLAMNAGMFD-  334 (466)
T ss_pred             EEEEEEEeeEcccCCCCCCcCHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCcccCCCcccccCcCceEEEeEEEE-
Confidence            688999999999999999999999999988873          1   110000000 000 000112345789999999 


Q ss_pred             CCCccceeCCeEEEEEEEeCCCCCCHHHHHHHHHHHHHHHhhcccccccccCcccccCCCcccccccee----eecC---
Q 029000           68 PGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGRHVL----SLHY---  140 (200)
Q Consensus        68 gg~~~NviP~~a~~~~diR~~~~~~~e~i~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~~l~~~~~~----~~~~---  140 (200)
                      +|.. |   ++|++.+|+|++|+++.+++.++|++.++.. .+++... ....+.+.+.|+++...+..    +.+.   
T Consensus       335 gG~~-~---~~~~l~iD~R~~Pge~~eev~~eI~~~i~~~-~~v~~~~-~~~~P~~~~~ds~lv~~l~~a~~~v~G~~~~  408 (466)
T TIGR01886       335 FDHA-N---KESKLLLNFRYPQGTSPETMQKQVLDKFGGI-VDVTYNG-HFEEPHYVPGSDPLVQTLLKVYEKHTGKKGH  408 (466)
T ss_pred             EecC-C---ceEEEEEEEecCCCCCHHHHHHHHHHHHhcc-cEEEEec-ccCCCcccCCCCHHHHHHHHHHHHHhCCCCc
Confidence            6644 3   8999999999999999999999999988752 2222111 11223345566664333211    1111   


Q ss_pred             --CCCcccccccccc
Q 029000          141 --LTLGRDDFRIFPL  153 (200)
Q Consensus       141 --~~~~~eDf~~~~~  153 (200)
                        ..-++-|.++|..
T Consensus       409 ~~~~~ggTDa~~~~~  423 (466)
T TIGR01886       409 EVIIGGGTYGRLLER  423 (466)
T ss_pred             eeeecCccHHHhccc
Confidence              1234578888864

This model represents a small clade of dipeptidase enzymes which are members of the larger M25 subfamily of metalloproteases. Two characterized enzymes are included in the seed. One, from Lactococcus lactis has been shown to act on a wide range of dipeptides, but not larger peptides. The enzyme from Lactobacillus delbrueckii was originally characterized as a Xaa-His dipeptidase, specifically a carnosinase (beta-Ala-His) by complementation of an E. coli mutant. Further study, including the crystallization of the enzyme, has shown it to also be a non-specific dipeptidase. This group also includes enzymes from Streptococcus and Enterococcus.

>PRK07906 hypothetical protein; Provisional

Probab=99.43  E-value=3.8e-13  Score=117.73  Aligned_cols=100  Identities=20%  Similarity=0.245  Sum_probs=73.8

Q ss_pred             eEEEEEEeeecCCcCCCCCCCCHHHHHHHHHHHHhHhhccc------------CCC---C--CCC-------------cc
Q 029000            2 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKD------------FPP---H--PKE-------------QV   51 (200)
Q Consensus         2 ~~~~I~v~G~~gHas~P~~g~NAi~~aa~~l~~l~~~~~~~------------~~~---~--~~~-------------~~   51 (200)
                      ++++|+++|+++|||.|+. +||+..+++++..|++.....            +..   .  .+.             ..
T Consensus       192 ~~~~v~v~G~~~Hss~p~~-~nAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  270 (426)
T PRK07906        192 AWMRLTARGRAGHGSMVND-DNAVTRLAEAVARIGRHRWPLVLTPTVRAFLDGVAELTGLEFDPDDPDALLAKLGPAARM  270 (426)
T ss_pred             EEEEEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHHhCCCCcccCHHHHHHHHHhhhhcCcccCcccHHHHHHHHhhcCcc
Confidence            6899999999999999975 999999999999987531100            000   0  000             00


Q ss_pred             CCCCCCceEeeeEEecCCCccceeCCeEEEEEEEeCCCCCCHHHHHHHHHHHH
Q 029000           52 YGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYV  104 (200)
Q Consensus        52 ~~~~~~~t~~~g~i~~gg~~~NviP~~a~~~~diR~~~~~~~e~i~~~i~~~~  104 (200)
                      .......++++|.|+ +|...|+||++|++.+|+|++++++ +++.++|++++
T Consensus       271 ~~~~~~~t~~~~~i~-gG~~~NviP~~~~~~~d~R~~p~~~-~~i~~~i~~~~  321 (426)
T PRK07906        271 VGATLRNTANPTMLK-AGYKVNVIPGTAEAVVDGRFLPGRE-EEFLATVDELL  321 (426)
T ss_pred             hhhhhcccccceeEe-ccCccccCCCceEEEEEEeECCCCc-HHHHHHHHHHh
Confidence            000013588999999 8889999999999999999999886 67777777765

>PRK04443 acetyl-lysine deacetylase; Provisional

Probab=99.42  E-value=4.6e-13  Score=114.35  Aligned_cols=150  Identities=15%  Similarity=0.122  Sum_probs=97.4

Q ss_pred             eEEEEEEeeecCCcCCCCCCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCeEEE
Q 029000            2 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTV   81 (200)
Q Consensus         2 ~~~~I~v~G~~gHas~P~~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~a~~   81 (200)
                      ++++|+++|+++|||.|  |.||+..+++++..|++... .....     .....+.+.+++.++ .  ..|++|++|++
T Consensus       161 ~~~~l~~~G~~~Hss~~--g~NAi~~~~~~l~~l~~~~~-~~~~~-----~~~~~~~~~~i~~i~-~--~~n~iP~~~~~  229 (348)
T PRK04443        161 LLVTYVATSESFHSAGP--EPNAAEDAIEWWLAVEAWFE-ANDGR-----ERVFDQVTPKLVDFD-S--SSDGLTVEAEM  229 (348)
T ss_pred             EEEEEEEEeCCCccCCC--CCCHHHHHHHHHHHHHHHHh-cCccc-----cccccccceeeeEEe-c--CCCCCCceEEE
Confidence            68999999999999988  79999999999999987422 10010     011234567788887 3  46999999999


Q ss_pred             EEEEeCCCCCCHHHHHHHHHHHHHHHhhcccccccccCcccccCCCccccccc----eeeecC----CCCcccccccccc
Q 029000           82 SGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGRH----VLSLHY----LTLGRDDFRIFPL  153 (200)
Q Consensus        82 ~~diR~~~~~~~e~i~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~~l~~~~----~~~~~~----~~~~~eDf~~~~~  153 (200)
                      .+|+|++|+++.+++.++|++.+...  +++ ... ..++...+.|+++...+    ....+.    ...|+-|.++|..
T Consensus       230 ~~d~R~~p~~~~~~i~~~i~~~~~~~--~~~-~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tD~~~~~~  305 (348)
T PRK04443        230 TVGLRLPPGLSPEEAREILDALLPTG--TVT-FTG-AVPAYMVSKRTPLARAFRVAIREAGGTPRLKRKTGTSDMNVVAP  305 (348)
T ss_pred             EEEEccCCCCCHHHHHHHHHHhCCCc--EEE-Eec-CCCceecCCCCHHHHHHHHHHHHhcCCcceeccccCCcHHHHhh
Confidence            99999999999999999999987432  222 111 12233345565533221    111111    1235668888754


Q ss_pred             cccccccccccee
Q 029000          154 RWQRHKIKFGRLK  166 (200)
Q Consensus       154 ~~~~~~~~fG~~~  166 (200)
                      ......+.|||+.
T Consensus       306 ~~gip~v~~Gpg~  318 (348)
T PRK04443        306 AWGCPMVAYGPGD  318 (348)
T ss_pred             hcCCCEEEECCCC
Confidence            3223334667654

>PRK13381 peptidase T; Provisional

Probab=99.40  E-value=7.4e-13  Score=115.21  Aligned_cols=92  Identities=12%  Similarity=0.081  Sum_probs=72.5

Q ss_pred             eEEEEEEeeecCCcC-CCCCCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCeEE
Q 029000            2 IPWKLHVTGKLFHSG-LPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECT   80 (200)
Q Consensus         2 ~~~~I~v~G~~gHas-~P~~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~a~   80 (200)
                      .+++|+++|+++|++ .|+.|+|||..+++++.+|++........         ....+++++.++ ++      |++|+
T Consensus       210 ~~~~v~v~Gk~aHa~~~p~~g~NAI~~a~~~i~~l~~~~~~~~~~---------~~~~~i~v~~i~-g~------p~~~~  273 (404)
T PRK13381        210 ASAEITITGVTAHPMSAKGVLVNPILMANDFISHFPRQETPEHTE---------GREGYIWVNDLQ-GN------VNKAK  273 (404)
T ss_pred             eEEEEEEEeEecCCCCCcccCcCHHHHHHHHHHhCCccCCCCCCC---------CcccEEEEEeEE-eC------cceEE
Confidence            589999999999987 48999999999999999987641111000         112356677666 32      89999


Q ss_pred             EEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 029000           81 VSGDVRLTPFYNVTDVMKRLQEYVDDINE  109 (200)
Q Consensus        81 ~~~diR~~~~~~~e~i~~~i~~~~~~~~~  109 (200)
                      +++|+|+++.++.+++.++|++.+++.+.
T Consensus       274 ~~~diR~~~~~~~e~i~~~i~~~~~~~~~  302 (404)
T PRK13381        274 LKLIIRDFDLDGFEARKQFIEEVVAKINA  302 (404)
T ss_pred             EEEEEecCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999988653

>PRK05469 peptidase T; Provisional

Probab=99.38  E-value=9.7e-13  Score=114.61  Aligned_cols=92  Identities=17%  Similarity=0.083  Sum_probs=72.3

Q ss_pred             eEEEEEEeeecCCcC-CCCCCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCeEE
Q 029000            2 IPWKLHVTGKLFHSG-LPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECT   80 (200)
Q Consensus         2 ~~~~I~v~G~~gHas-~P~~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~a~   80 (200)
                      .+++|+++|+++|++ .|+.|.|||..+++++..|++.. ......        ....++++|.++ +|      |++|+
T Consensus       212 ~~~~i~v~Gk~~Ha~~~p~~g~nAi~~~~~~i~~l~~~~-~~~~~~--------~~~~~i~~g~i~-gg------p~~~~  275 (408)
T PRK05469        212 ASAKITIHGVNVHPGTAKGKMVNALLLAADFHAMLPADE-TPETTE--------GYEGFYHLTSIK-GT------VEEAE  275 (408)
T ss_pred             eEEEEEEeeecCCCCCCcccccCHHHHHHHHHHhCCCCC-CCCCCC--------CceEEEEEEEEE-Ec------cceEE
Confidence            579999999999986 58999999999999999887531 110000        112345677766 43      89999


Q ss_pred             EEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 029000           81 VSGDVRLTPFYNVTDVMKRLQEYVDDINE  109 (200)
Q Consensus        81 ~~~diR~~~~~~~e~i~~~i~~~~~~~~~  109 (200)
                      +++|+|+.+.++.+++.++|++++++.+.
T Consensus       276 i~~diR~~~~e~~e~i~~~i~~~~~~~~~  304 (408)
T PRK05469        276 LSYIIRDFDREGFEARKALMQEIAKKVNA  304 (408)
T ss_pred             EEEEEecCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999988753

>PRK06446 hypothetical protein; Provisional

Probab=99.37  E-value=2.8e-12  Score=112.74  Aligned_cols=105  Identities=17%  Similarity=0.155  Sum_probs=79.7

Q ss_pred             eEEEEEEee--ecCCcCCCCCCCCHHHHHHHHHHHHhHhhcc----cCCCC-CCC---------------------c---
Q 029000            2 IPWKLHVTG--KLFHSGLPHKAINPLELAMEALKVIQTRFYK----DFPPH-PKE---------------------Q---   50 (200)
Q Consensus         2 ~~~~I~v~G--~~gHas~P~~g~NAi~~aa~~l~~l~~~~~~----~~~~~-~~~---------------------~---   50 (200)
                      ++++++++|  +++|||.|+.|.||+..+++++.+|.+....    .+... .+.                     .   
T Consensus       182 ~~~~l~v~G~~~~~Hss~p~~g~NAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  261 (436)
T PRK06446        182 LYVELVLRTGTKDLHSSNAPIVRNPAWDLVKLLSTLVDGEGRVLIPGFYDDVRELTEEERELLKKYDIDVEELRKALGFK  261 (436)
T ss_pred             EEEEEEEEeCCCCCCCCCCccCCCHHHHHHHHHHhhCCCCCCEEccchhcCCCCCCHHHHHHHHhCCCCHHHHHHHhCCc
Confidence            688999998  9999999999999999999999999753100    00000 000                     0   


Q ss_pred             ---c-------CCCCCCceEeeeEEecCC----CccceeCCeEEEEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 029000           51 ---V-------YGFETPSTMKPTQWSYPG----GGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDI  107 (200)
Q Consensus        51 ---~-------~~~~~~~t~~~g~i~~gg----~~~NviP~~a~~~~diR~~~~~~~e~i~~~i~~~~~~~  107 (200)
                         .       .......++++|.++ +|    ...|+||++|++++|+|++|+++.+++.++|++.+++.
T Consensus       262 ~~~~~~~~~~~~~~~~~~t~nv~~i~-~g~~~~~~~nvvP~~a~~~~d~R~~p~~~~~~v~~~l~~~~~~~  331 (436)
T PRK06446        262 ELKYSDREKIAEALLTEPTCNIDGFY-SGYTGKGSKTIVPSRAFAKLDFRLVPNQDPYKIFELLKKHLQKV  331 (436)
T ss_pred             cccCCCcccHHHHHHhCCcEEEeeee-ccccCCCCCcEecCceEEEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence               0       000123688999888 54    46799999999999999999999999999999999874

>PRK08596 acetylornithine deacetylase; Validated

Probab=99.37  E-value=5.1e-12  Score=110.58  Aligned_cols=103  Identities=17%  Similarity=0.253  Sum_probs=79.0

Q ss_pred             EEEEEEeee----------cCCcCCCCCCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCcc
Q 029000            3 PWKLHVTGK----------LFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGI   72 (200)
Q Consensus         3 ~~~I~v~G~----------~gHas~P~~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~   72 (200)
                      +++++++|+          .+|++.|+.|.||+..+++++.+|+++. ..+......+... ....+++++.|+ ||...
T Consensus       190 ~~~~~v~g~~~~~~~~~~~~~H~~~p~~G~nai~~~~~~i~~l~~~~-~~~~~~~~~~~~~-~~~~t~~v~~i~-gG~~~  266 (421)
T PRK08596        190 TGWITVKSPQTFHDGTRRQMIHAGGGLFGASAIEKMMKIIQSLQELE-RHWAVMKSYPGFP-PGTNTINPAVIE-GGRHA  266 (421)
T ss_pred             eEEEEEEeecccccccccccccccCCccCcCHHHHHHHHHHHHHHHH-HHHhhcccCccCC-CCCcceeeeeee-CCCCC
Confidence            456666665          4799999999999999999999998742 1110000000000 123688999999 99999


Q ss_pred             ceeCCeEEEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Q 029000           73 NQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDIN  108 (200)
Q Consensus        73 NviP~~a~~~~diR~~~~~~~e~i~~~i~~~~~~~~  108 (200)
                      |+||++|++.+|+|++|+++.+++.++|++.+++.+
T Consensus       267 nvvP~~~~~~~d~R~~p~~~~~~v~~~i~~~~~~~~  302 (421)
T PRK08596        267 AFIADECRLWITVHFYPNETYEQVIKEIEEYIGKVA  302 (421)
T ss_pred             CccCceEEEEEEeeeCCCCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999988754

>PRK06156 hypothetical protein; Provisional

Probab=99.32  E-value=6.4e-12  Score=112.83  Aligned_cols=151  Identities=16%  Similarity=0.137  Sum_probs=92.4

Q ss_pred             EEEEEEeeecCCcCCCCCCCCHHHHHHHHHHHHhHhhccc----------C-CCCC-CCc------cCCCCCCceEeeeE
Q 029000            3 PWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKD----------F-PPHP-KEQ------VYGFETPSTMKPTQ   64 (200)
Q Consensus         3 ~~~I~v~G~~gHas~P~~g~NAi~~aa~~l~~l~~~~~~~----------~-~~~~-~~~------~~~~~~~~t~~~g~   64 (200)
                      |++|+++|+++|+|.|+.|+|||..+++++.++++.+...          . .... ...      ........+++++.
T Consensus       300 ~~~I~v~Gk~aHsS~P~~G~NAI~~aa~ii~~L~~~l~~~~~~~~~~~i~~~~~~~~~g~~~g~~~~~~~~g~~t~~~~~  379 (520)
T PRK06156        300 DVTITVTGKSAHSSTPESGVNPVTRLALFLQSLDGDLPHNHAADAARYINDLVGLDYLGEKFGVAYKDDFMGPLTLSPTV  379 (520)
T ss_pred             eEEEEEEeEECCCCCCCCCccHHHHHHHHHHhccccccchhHHHHHHHHHHhhCCCCccCcCCccccCCCccCcEEeeeE
Confidence            7899999999999999999999999999999987521000          0 0000 000      00111224556666


Q ss_pred             EecCCCccceeCCeEEEEEEEeCCCCCCHHHHHHHHHHHHHHHhhc--cc-ccccccCcccccCCCccccccc----eee
Q 029000           65 WSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINEN--IE-KLDTRGPVSKYVLPDENIRGRH----VLS  137 (200)
Q Consensus        65 i~~gg~~~NviP~~a~~~~diR~~~~~~~e~i~~~i~~~~~~~~~~--v~-~~~~~~~~~~~~~~d~~l~~~~----~~~  137 (200)
                      +. +|.      ++|++++|+|++++++.+++.++|++.+++....  ++ ++......+...+.|+++...+    ...
T Consensus       380 I~-gg~------~~~~l~iDiR~~p~~~~eev~~~I~~~i~~~~~~~gv~ve~~~~~~~p~~~~~d~~lv~~l~~a~~~~  452 (520)
T PRK06156        380 VG-QDD------KGTEVTVNLRRPVGKTPELLKGEIADALAAWQAKHQVALDIDYYWGEPMVRDPKGPWLKTLLDVFGHF  452 (520)
T ss_pred             EE-EeC------CeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHhhcCceEEEeecCCCceeeCCCCHHHHHHHHHHHHH
Confidence            66 332      6899999999999999999999999998865332  22 1111112233445565543222    111


Q ss_pred             ecC-----CCCccccccccccccccccccccce
Q 029000          138 LHY-----LTLGRDDFRIFPLRWQRHKIKFGRL  165 (200)
Q Consensus       138 ~~~-----~~~~~eDf~~~~~~~~~~~~~fG~~  165 (200)
                      .+.     ...|+-|.++|+     ..+.|||.
T Consensus       453 ~G~~~~~~~~~ggTDa~~~~-----~~v~fGP~  480 (520)
T PRK06156        453 TGLDAKPVAIAGSTNAKLFP-----NAVSFGPA  480 (520)
T ss_pred             hCCCCceeeecChhhhhhCC-----ccEEEcCC
Confidence            111     123456777774     25678884

>PRK09133 hypothetical protein; Provisional

Probab=99.32  E-value=1.1e-11  Score=110.00  Aligned_cols=103  Identities=21%  Similarity=0.206  Sum_probs=79.5

Q ss_pred             eEEEEEEeeecCCcCCCCCCCCHHHHHHHHHHHHhHhhcccCCCC--------------------------CC-------
Q 029000            2 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPH--------------------------PK-------   48 (200)
Q Consensus         2 ~~~~I~v~G~~gHas~P~~g~NAi~~aa~~l~~l~~~~~~~~~~~--------------------------~~-------   48 (200)
                      ++++|+++|+++|+|.|+ +.|||..+++++.+|++.........                          .+       
T Consensus       227 ~~~~i~v~G~~~Hss~p~-~~nAi~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (472)
T PRK09133        227 ADFRLEVTNPGGHSSRPT-KDNAIYRLAAALSRLAAYRFPVMLNDVTRAYFKQSAAIETGPLAAAMRAFAANPADEAAIA  305 (472)
T ss_pred             EEEEEEEecCCCCCCCCC-CCChHHHHHHHHHHHhhCCCCCccCCccHHHHHHHHHhCCchHHHHHHHHhcCcchHHHHH
Confidence            589999999999999997 58999999999999976310000000                          00       


Q ss_pred             ----CccCCCCCCceEeeeEEecCCCccceeCCeEEEEEEEeCCCCCCHHHHHHHHHHHHHH
Q 029000           49 ----EQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDD  106 (200)
Q Consensus        49 ----~~~~~~~~~~t~~~g~i~~gg~~~NviP~~a~~~~diR~~~~~~~e~i~~~i~~~~~~  106 (200)
                          .+........++++|.|+ +|...|+||++|++++|+|++++++.+++.++|++.++.
T Consensus       306 ~~~~~~~~~~~~~~t~~~~~i~-gG~~~NvVP~~a~~~lDiR~~p~~~~e~v~~~I~~~i~~  366 (472)
T PRK09133        306 LLSADPSYNAMLRTTCVATMLE-GGHAENALPQRATANVNCRIFPGDTIEAVRATLKQVVAD  366 (472)
T ss_pred             HHhcCcchhheeeeeEEeeEEe-cCCcCccCCCceEEEEEEEeCCchhHHHHHHHHHHHhcC
Confidence                000000123688999999 889999999999999999999999999999999998865

>PRK07473 carboxypeptidase; Provisional

Probab=99.27  E-value=2.6e-11  Score=104.76  Aligned_cols=88  Identities=14%  Similarity=0.129  Sum_probs=73.6

Q ss_pred             eEEEEEEeeecCCcC-CCCCCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCeEE
Q 029000            2 IPWKLHVTGKLFHSG-LPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECT   80 (200)
Q Consensus         2 ~~~~I~v~G~~gHas-~P~~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~a~   80 (200)
                      .+++|+++|+++|++ .|+.|+||+..+++++.+|+++ ..              ...++++|.|+ +|...|+||++|+
T Consensus       187 ~~~~v~~~G~~aHag~~p~~g~nAi~~~~~~i~~l~~~-~~--------------~~~~~~vg~i~-gg~~~n~VP~~~~  250 (376)
T PRK07473        187 ARFNLEATGRPSHAGATLSEGRSAIREMARQILAIDAM-TT--------------EDCTFSVGIVH-GGQWVNCVATTCT  250 (376)
T ss_pred             EEEEEEEEeEcCCCCCCcccCcCHHHHHHHHHHHHHHh-cC--------------CCceEeEeeEE-cCCCCcCCCCceE
Confidence            689999999999986 7999999999999999999874 11              12578999999 8899999999999


Q ss_pred             EEEEEeCCCCCCHHHHHHHHHHHHH
Q 029000           81 VSGDVRLTPFYNVTDVMKRLQEYVD  105 (200)
Q Consensus        81 ~~~diR~~~~~~~e~i~~~i~~~~~  105 (200)
                      ++++.|....+..+++.+++.+.++
T Consensus       251 ~~~d~r~~~~~~~~~~~~~i~~~~~  275 (376)
T PRK07473        251 GEALSMAKRQADLDRGVARMLALSG  275 (376)
T ss_pred             EEEEEEeCCHhHHHHHHHHHHHhhC
Confidence            9999998877776666666655544

>COG0624 ArgE Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism]

Probab=99.26  E-value=8.6e-11  Score=102.32  Aligned_cols=156  Identities=24%  Similarity=0.250  Sum_probs=94.2

Q ss_pred             eEEEEEEeeecCCcCC--CCCCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCC-CceEeeeEEec-------CCCc
Q 029000            2 IPWKLHVTGKLFHSGL--PHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFET-PSTMKPTQWSY-------PGGG   71 (200)
Q Consensus         2 ~~~~I~v~G~~gHas~--P~~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~-~~t~~~g~i~~-------gg~~   71 (200)
                      ++++|+++|+++|+|.  |+.|.|++..+.+.+.++...+.+-....        .. +.+++++.+..       ++..
T Consensus       198 ~~~~v~v~G~~~Has~~~p~~~~n~i~~a~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~  269 (409)
T COG0624         198 LWLEVTVKGKAGHASTTPPDLGRNPIHAAIEALAELIEELGDLAGEG--------FDGPLGLNVGLILAGPGASVNGGDK  269 (409)
T ss_pred             EEEEEEEEeecccccccCCcccccHHHHHHHHHHHHHHHhccccccc--------ccCCccccccccccCCcccccCCcc
Confidence            6899999999999998  99999955444444444433211110110        11 24455555442       3334


Q ss_pred             cceeCCeEEEEEEEeCCCCCCHHHHHHHHHHHHHHHhh--ccc-cccc-ccCcccccCCCccccccc----eeeec----
Q 029000           72 INQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINE--NIE-KLDT-RGPVSKYVLPDENIRGRH----VLSLH----  139 (200)
Q Consensus        72 ~NviP~~a~~~~diR~~~~~~~e~i~~~i~~~~~~~~~--~v~-~~~~-~~~~~~~~~~d~~l~~~~----~~~~~----  139 (200)
                      .|+||++|++.+|+|+.|..+.+++.+++++.++....  .++ ++.. ....+.+++.++.+...+    ....+    
T Consensus       270 ~nviP~~~~~~~d~R~~p~~~~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~g~~~~  349 (409)
T COG0624         270 VNVIPGEAEATVDIRLLPGEDLDDVLEELEAELRAIAPKEGVEYEIEPGLGEPPLPVPGDSPLVAALAEAAEELLGLPPE  349 (409)
T ss_pred             CceecceEEEEEEEecCCcCCHHHHHHHHHHHHHHhccccCceEEeccccCCccccCCCchHHHHHHHHHHHHhhCCCce
Confidence            69999999999999999999999999999888887644  233 2221 223445666666543221    11111    


Q ss_pred             -CCCCcccccccccccccccccccccee
Q 029000          140 -YLTLGRDDFRIFPLRWQRHKIKFGRLK  166 (200)
Q Consensus       140 -~~~~~~eDf~~~~~~~~~~~~~fG~~~  166 (200)
                       ....++-|..|+.....+ .+.|||+.
T Consensus       350 ~~~~G~~~da~~~~~~~~~-~~~fgp~~  376 (409)
T COG0624         350 VSTGGGTHDARFFARLGIP-AVIFGPGD  376 (409)
T ss_pred             ecCCCCcchHHHHHhcCCe-eEEECCCC
Confidence             111244777777654422 56777765

>TIGR01882 peptidase-T peptidase T

Probab=99.23  E-value=7.8e-12  Score=109.14  Aligned_cols=92  Identities=17%  Similarity=0.218  Sum_probs=69.8

Q ss_pred             eEEEEEEeeecCCcCCC-CCCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCeEE
Q 029000            2 IPWKLHVTGKLFHSGLP-HKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECT   80 (200)
Q Consensus         2 ~~~~I~v~G~~gHas~P-~~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~a~   80 (200)
                      .+++|+++|+++|++.+ +.+.||+..+.+++..+...   . ..          ..++-..+.++ ++ ..|.+|++|+
T Consensus       214 ~~~~I~v~Gk~aHa~~~~~~g~nAi~~a~~~~~~l~~~---~-~~----------~~t~~~~g~i~-~g-~i~giPd~a~  277 (410)
T TIGR01882       214 AAAKITIQGNNVHPGTAKGKMINAAQIAIDLHNLLPED---D-RP----------EYTEGREGFFH-LL-SIDGTVEEAK  277 (410)
T ss_pred             eEEEEEEEEEecCcccChHHHHHHHHHHHHHHHhcCCc---C-CC----------ccccceeEEEE-EE-eEEEecCEEE
Confidence            58999999999999976 58999999998887655431   0 00          00111124445 33 4677999999


Q ss_pred             EEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 029000           81 VSGDVRLTPFYNVTDVMKRLQEYVDDINE  109 (200)
Q Consensus        81 ~~~diR~~~~~~~e~i~~~i~~~~~~~~~  109 (200)
                      +.+|+|+.+.++.+++.++|++++++.+.
T Consensus       278 l~~diR~~~~e~~e~i~~~i~~i~~~~~~  306 (410)
T TIGR01882       278 LHYIIRDFEKENFQERKELMKRIVEKMNN  306 (410)
T ss_pred             EEEEEecCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999988654

This model represents a tripeptide aminopeptidase known as Peptidase T, which has a substrate preference for hydrophobic peptides.

>PRK07318 dipeptidase PepV; Reviewed

Probab=99.22  E-value=5.9e-11  Score=105.20  Aligned_cols=102  Identities=15%  Similarity=0.076  Sum_probs=73.6

Q ss_pred             EEEEEEeeecCCcCCCCCCCCHHHHHHHHHHHHhH------hh---cccCC----CCC-CC-ccCCCCCCceEeeeEEec
Q 029000            3 PWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQT------RF---YKDFP----PHP-KE-QVYGFETPSTMKPTQWSY   67 (200)
Q Consensus         3 ~~~I~v~G~~gHas~P~~g~NAi~~aa~~l~~l~~------~~---~~~~~----~~~-~~-~~~~~~~~~t~~~g~i~~   67 (200)
                      |++|+++|+++|+|.|+.|+|||..+++++.+|+.      .+   ...+.    ... .. .........++++|.++ 
T Consensus       257 ~~~i~v~G~aaH~s~p~~g~NAI~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~nvg~i~-  335 (466)
T PRK07318        257 KLVLTVIGKSAHGSTPEKGVNAATYLAKFLNQLNLDGDAKAFLDFAAEYLHEDTRGEKLGIAYEDDVMGDLTMNVGVFS-  335 (466)
T ss_pred             EEEEEEEeeEcccCCCccCccHHHHHHHHHHhccCchhHHHHHHHHHHhcCCCCCcccCCCcccCCCccCeEEEeeEEE-
Confidence            68999999999999999999999999999999863      10   00000    000 00 00011223578888888 


Q ss_pred             CCCccceeCCeEEEEEEEeCCCCCCHHHHHHHHHHHHHHHhhc
Q 029000           68 PGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINEN  110 (200)
Q Consensus        68 gg~~~NviP~~a~~~~diR~~~~~~~e~i~~~i~~~~~~~~~~  110 (200)
                      ++...     +|++.+|+|++++++.+++.++|++.+++...+
T Consensus       336 gg~~~-----~~~~~iDiR~~p~~~~~~v~~~i~~~~~~~~~~  373 (466)
T PRK07318        336 FDEEK-----GGTLGLNFRYPVGTDFEKIKAKLEKLIGVTGVE  373 (466)
T ss_pred             EecCc-----EEEEEEEEeCCCCCCHHHHHHHHHHHHHhcCeE
Confidence            54321     699999999999999999999999998765433

>PRK08201 hypothetical protein; Provisional

Probab=99.21  E-value=1.2e-10  Score=102.90  Aligned_cols=106  Identities=19%  Similarity=0.188  Sum_probs=76.8

Q ss_pred             CeEEEEEEeeecC--CcCCCCC-CCCHHHHHHHHHHHHhHhhccc--------CCC------------------------
Q 029000            1 MIPWKLHVTGKLF--HSGLPHK-AINPLELAMEALKVIQTRFYKD--------FPP------------------------   45 (200)
Q Consensus         1 ~~~~~I~v~G~~g--Has~P~~-g~NAi~~aa~~l~~l~~~~~~~--------~~~------------------------   45 (200)
                      .++++|+++|+++  |||.|.. +.||+..+++++.+|++.....        +.+                        
T Consensus       199 ~~~~~l~v~G~~~~~Hs~~~~~~~~nAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (456)
T PRK08201        199 LAALEIDVRGAKGDLHSGLYGGAVPNALHALVQLLASLHDEHGTVAVEGFYDGVRPLTPEEREEFAALGFDEEKLKRELG  278 (456)
T ss_pred             eEEEEEEEEeCCCCCccccccCcCCCHHHHHHHHHHhcCCCCCCEecCCcccCCCCCCHHHHHHHHhCCCCHHHHHhhcC
Confidence            3789999999998  9987765 4799999999999997521000        000                        


Q ss_pred             CCCCcc-CC------CCCCceEeeeEEecCC----CccceeCCeEEEEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 029000           46 HPKEQV-YG------FETPSTMKPTQWSYPG----GGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDI  107 (200)
Q Consensus        46 ~~~~~~-~~------~~~~~t~~~g~i~~gg----~~~NviP~~a~~~~diR~~~~~~~e~i~~~i~~~~~~~  107 (200)
                      ...... ..      .....+++++.|+ ||    +..|+||++|++.+|+|++|+++.+++.++|++.+++.
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~t~~i~~i~-gg~~~~~~~NvVP~~a~~~~diR~~p~~~~e~v~~~i~~~l~~~  350 (456)
T PRK08201        279 VDELFGEEGYTALERTWARPTLELNGVY-GGFQGEGTKTVIPAEAHAKITCRLVPDQDPQEILDLIEAHLQAH  350 (456)
T ss_pred             CccccCCcchHHHHHHHhCCcEEEEeee-cCCCCCCCceEECcceEEEEEEEeCCCCCHHHHHHHHHHHHHHh
Confidence            000000 00      0012478888887 54    34799999999999999999999999999999998764

>PRK09104 hypothetical protein; Validated

Probab=99.18  E-value=1.4e-10  Score=102.72  Aligned_cols=105  Identities=19%  Similarity=0.200  Sum_probs=77.5

Q ss_pred             eEEEEEEee--ecCCcCC-CCCCCCHHHHHHHHHHHHhHhhcc-cCCCCC-------------------CC----ccCC-
Q 029000            2 IPWKLHVTG--KLFHSGL-PHKAINPLELAMEALKVIQTRFYK-DFPPHP-------------------KE----QVYG-   53 (200)
Q Consensus         2 ~~~~I~v~G--~~gHas~-P~~g~NAi~~aa~~l~~l~~~~~~-~~~~~~-------------------~~----~~~~-   53 (200)
                      ++++|+++|  +++|||. |+.|.||+..+++++.+|.+.... .++...                   ..    ...+ 
T Consensus       208 ~~~~l~v~g~~~~~Hss~~~~~g~nai~~~~~~l~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (464)
T PRK09104        208 VGEEVTITAADRDLHSGLFGGAAANPIRVLTRILAGLHDETGRVTLPGFYDGVEELPPEILAQWKALGFTAEAFLGPVGL  287 (464)
T ss_pred             EEEEEEEEeCCCCccccccCCccCCHHHHHHHHHHhccCCCCCEeCCccccCCCCCCHHHHHHHHhCCCCHHHHHHhcCC
Confidence            689999999  6899996 688999999999999998652100 000000                   00    0000 


Q ss_pred             --------------CCCCceEeeeEEecCCC----ccceeCCeEEEEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 029000           54 --------------FETPSTMKPTQWSYPGG----GINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDI  107 (200)
Q Consensus        54 --------------~~~~~t~~~g~i~~gg~----~~NviP~~a~~~~diR~~~~~~~e~i~~~i~~~~~~~  107 (200)
                                    .....+++++.|+ +|.    ..|+||++|++++|+|++|+++.+++.++|++.+++.
T Consensus       288 ~~~~~~~~~~~~~~~~~~~t~~i~~i~-gg~~~~~~~nvvP~~~~~~~diR~~p~~~~~~v~~~i~~~l~~~  358 (464)
T PRK09104        288 SIPAGEKGRSVLEQIWSRPTCEINGIW-GGYTGEGFKTVIPAEASAKVSFRLVGGQDPAKIREAFRAYVRAR  358 (464)
T ss_pred             ccccCcccHHHHHHHhhCCeEEEeccc-cCCCCCCCccEecCceEEEEEEEeCCCCCHHHHHHHHHHHHHHh
Confidence                          0112578899998 663    5799999999999999999999999999999998764

>KOG2275 consensus Aminoacylase ACY1 and related metalloexopeptidases [Amino acid transport and metabolism]

Probab=99.18  E-value=1.6e-10  Score=98.56  Aligned_cols=105  Identities=17%  Similarity=0.216  Sum_probs=83.4

Q ss_pred             eEEEEEEeeecCCcCCCCCCCCHHHHHHHHHHHHhHhhccc--CCCCCCCccCCCCCCceEeeeEEecCCCccceeCCeE
Q 029000            2 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKD--FPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGEC   79 (200)
Q Consensus         2 ~~~~I~v~G~~gHas~P~~g~NAi~~aa~~l~~l~~~~~~~--~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~a   79 (200)
                      +|++|++.|.+||||.|.. ..|+.++.+++..+++...+.  +...  .+.......+|++++.|+ ||.+.|++|++.
T Consensus       210 w~~~v~~~G~~GHss~~~~-nTa~~~l~klv~~~~~fr~~q~~~l~~--~p~~~~~~vtT~Nv~~i~-GGv~~N~~P~~~  285 (420)
T KOG2275|consen  210 WWLKVTANGTPGHSSYPPP-NTAIEKLEKLVESLEEFREKQVDLLAS--GPKLALGDVTTINVGIIN-GGVQSNVLPETF  285 (420)
T ss_pred             eEEEEEecCCCCCCCCCCC-ccHHHHHHHHHHHHHHhHHHHHHHhhc--CCceeccceeEEeeeeee-cccccCcCchhh
Confidence            6899999999999998654 478999999999888742111  0111  122223456899999999 999999999999


Q ss_pred             EEEEEEeCCCCCCHHHHHHHH-HHHHHHHhhc
Q 029000           80 TVSGDVRLTPFYNVTDVMKRL-QEYVDDINEN  110 (200)
Q Consensus        80 ~~~~diR~~~~~~~e~i~~~i-~~~~~~~~~~  110 (200)
                      ++.+|+|..+..+.+.+.+++ ++++++.+.-
T Consensus       286 ea~~dirv~~~~d~~~i~~~l~~~w~~~~~eg  317 (420)
T KOG2275|consen  286 EAAFDIRVRPHVDVKAIRDQLEDEWAEEAGEG  317 (420)
T ss_pred             eeeeeeEeccCCCHHHHHHHHHHHhhhhcCCc
Confidence            999999999999999999999 8888776553

>PRK07907 hypothetical protein; Provisional

Probab=99.13  E-value=5.1e-10  Score=98.75  Aligned_cols=106  Identities=13%  Similarity=0.104  Sum_probs=77.4

Q ss_pred             eEEEEEEe--eecCCcCCC-CCCCCHHHHHHHHHHHHhHhhcc----cCCCCCCCccC-----------------C----
Q 029000            2 IPWKLHVT--GKLFHSGLP-HKAINPLELAMEALKVIQTRFYK----DFPPHPKEQVY-----------------G----   53 (200)
Q Consensus         2 ~~~~I~v~--G~~gHas~P-~~g~NAi~~aa~~l~~l~~~~~~----~~~~~~~~~~~-----------------~----   53 (200)
                      ++++++++  |+++|||.| ..+.||+..+++++.+|.+...+    .+....+....                 .    
T Consensus       201 ~~~~l~v~~~G~~~Hss~~~~~~~nAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (449)
T PRK07907        201 ADVVVTVRTLEHAVHSGQFGGAAPDALTALVRLLATLHDEDGNVAVDGLDATEPWLGVDYDEERFRADAGVLDGVELIGT  280 (449)
T ss_pred             EEEEEEEEECCCCCCCccccccCCCHHHHHHHHHHhhCCCCCCEeCCCccCCCCcccccccHHHHHHHhhhhhcccccCC
Confidence            57788887  999999975 66899999999999999763111    00000000000                 0    


Q ss_pred             ------CCCCceEeeeEEecC--CCccceeCCeEEEEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 029000           54 ------FETPSTMKPTQWSYP--GGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDI  107 (200)
Q Consensus        54 ------~~~~~t~~~g~i~~g--g~~~NviP~~a~~~~diR~~~~~~~e~i~~~i~~~~~~~  107 (200)
                            .....+++++.|+.+  |+..|+||++|++++|+|++|+++.+++.+.|++.+++.
T Consensus       281 ~~~~~~~~~~~t~~i~~i~~~~~g~~~nvIP~~a~~~~diR~~p~~~~e~v~~~l~~~l~~~  342 (449)
T PRK07907        281 GSVADRLWAKPAITVIGIDAPPVAGASNALPPSARARLSLRVAPGQDAAEAQDALVAHLEAH  342 (449)
T ss_pred             ChHHHHhhhcCcEEEEeeecCCCCCCCCEecCceEEEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence                  012357788888832  468899999999999999999999999999999998764

>PRK07205 hypothetical protein; Provisional

Probab=99.13  E-value=5.2e-10  Score=98.57  Aligned_cols=98  Identities=13%  Similarity=0.188  Sum_probs=70.0

Q ss_pred             EEEEEeeecCCcCCCCCCCCHHHHHHHHHHHHhHh-----hcccCCCCCCC-----cc-CCCCCCceEeeeEEecCCCcc
Q 029000            4 WKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTR-----FYKDFPPHPKE-----QV-YGFETPSTMKPTQWSYPGGGI   72 (200)
Q Consensus         4 ~~I~v~G~~gHas~P~~g~NAi~~aa~~l~~l~~~-----~~~~~~~~~~~-----~~-~~~~~~~t~~~g~i~~gg~~~   72 (200)
                      .+++++|+++|+|.|+.|.|||..+++++.++++.     +.+.+....+.     .. .......++++|       ..
T Consensus       240 ~~v~v~G~~~Hss~p~~g~nAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~nvg-------~~  312 (444)
T PRK07205        240 NEVTVLGKSVHAKDAPQGINAVIRLAKALVVLEPHPALDFLANVIGEDATGLNIFGDIEDEPSGKLSFNIA-------GL  312 (444)
T ss_pred             cEEEEEeEEcccCCCccCcCHHHHHHHHHHhccHHHHHHHHHHhcCCCCccccCCccccCCCcCCceEEeE-------EE
Confidence            38999999999999999999999999999888642     11111000000     00 000112344443       35


Q ss_pred             ceeCCeEEEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Q 029000           73 NQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDIN  108 (200)
Q Consensus        73 NviP~~a~~~~diR~~~~~~~e~i~~~i~~~~~~~~  108 (200)
                      |++|++|++++|+|++++++.+++.++|++.+++..
T Consensus       313 nvvP~~a~~~ld~R~~p~~~~e~v~~~i~~~~~~~~  348 (444)
T PRK07205        313 TITKEKSEIRIDIRIPVLADKEKLVQQLSQKAQEYG  348 (444)
T ss_pred             EEECCEEEEEEEEeCCCCCCHHHHHHHHHHHHHHcC
Confidence            899999999999999999999999999999887643

>PRK07079 hypothetical protein; Provisional

Probab=99.02  E-value=2.7e-09  Score=94.67  Aligned_cols=107  Identities=14%  Similarity=0.117  Sum_probs=74.6

Q ss_pred             CeEEEEEEeeec-CCcCCCCCC--CCHHHHHHHHHHHHhHhhccc----C----------------CCCCCC--c-----
Q 029000            1 MIPWKLHVTGKL-FHSGLPHKA--INPLELAMEALKVIQTRFYKD----F----------------PPHPKE--Q-----   50 (200)
Q Consensus         1 ~~~~~I~v~G~~-gHas~P~~g--~NAi~~aa~~l~~l~~~~~~~----~----------------~~~~~~--~-----   50 (200)
                      .++++|+++|++ +|.|.++.|  .||+..++.++.++.+.....    +                ......  .     
T Consensus       207 ~~~~~v~v~G~~~~~hs~~~~g~~~nai~~l~~ai~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (469)
T PRK07079        207 AVNFRLRVNLRDGAHHSGNWGGLLRNPGTVLAHAIASLVDARGRIQVPGLRPPPLPAAVRAALADITVGGGPGDPAIDPD  286 (469)
T ss_pred             EEEEEEEEeeCCCCCCCCccccccCCHHHHHHHHHHHhCCCCCCEecCCccCCCCCHHHHHHHHhCCCchhhhccCcccc
Confidence            368999999983 344435444  799999999999885421000    0                000000  0     


Q ss_pred             ----cC----CCCCCceEeeeEEecCC---CccceeCCeEEEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Q 029000           51 ----VY----GFETPSTMKPTQWSYPG---GGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDIN  108 (200)
Q Consensus        51 ----~~----~~~~~~t~~~g~i~~gg---~~~NviP~~a~~~~diR~~~~~~~e~i~~~i~~~~~~~~  108 (200)
                          ..    ......+++++.|+ +|   +..|+||++|++++|+|++|+++.+++.++|++.+++..
T Consensus       287 ~~~~~~~~~~~~~~~~t~nv~~i~-gG~~~~~~NvVP~~a~~~vdiR~~P~~~~e~v~~~l~~~i~~~~  354 (469)
T PRK07079        287 WGEPGLTPAERVFGWNTLEVLAFK-TGNPDAPVNAIPGSARAVCQLRFVVGTDWENLAPHLRAHLDAHG  354 (469)
T ss_pred             cCCCCcCHHHHHhhCCceEEEeee-cCCCCCcceEecCceEEEEEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence                00    00112578999999 66   368999999999999999999999999999999998754

>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase

Probab=99.01  E-value=1.6e-09  Score=96.32  Aligned_cols=87  Identities=20%  Similarity=0.216  Sum_probs=72.9

Q ss_pred             eEEEEEEee-ecCCcC-CCCCC-CCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCe
Q 029000            2 IPWKLHVTG-KLFHSG-LPHKA-INPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGE   78 (200)
Q Consensus         2 ~~~~I~v~G-~~gHas-~P~~g-~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~   78 (200)
                      .+++|+++| +++||+ .|+.+ .||+.++++++.++++.                   ...+++.+. ||...|+||++
T Consensus       196 ~~~~i~~~G~~~~Hsg~~p~~~r~nAi~~aa~~i~~l~~~-------------------~~~~v~~~~-gg~~~N~ip~~  255 (477)
T TIGR01893       196 EGYQISLKGLKGGHSGADIHKGRANANKLMARVLNELKEN-------------------LNFRLSDIK-GGSKRNAIPRE  255 (477)
T ss_pred             eEEEEEEeCcCCCcCccccCCCCcCHHHHHHHHHHhhhhc-------------------CCeEEEEEe-CCCcccccCCc
Confidence            589999999 999997 58888 59999999999988653                   124578888 89999999999


Q ss_pred             EEEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Q 029000           79 CTVSGDVRLTPFYNVTDVMKRLQEYVDDIN  108 (200)
Q Consensus        79 a~~~~diR~~~~~~~e~i~~~i~~~~~~~~  108 (200)
                      |++++|+|..+.+..+.+.+.+.+.++...
T Consensus       256 ~~~~~diR~~~~~~l~~~~~~~~~~~~~~~  285 (477)
T TIGR01893       256 AKALIAIDENDVKLLENLVKNFQSKFKSEY  285 (477)
T ss_pred             eEEEEEEChhHHHHHHHHHHHHHHHHHHHh
Confidence            999999999988888888877777766544

>TIGR01887 dipeptidaselike dipeptidase, putative

Probab=99.01  E-value=2.8e-09  Score=94.20  Aligned_cols=96  Identities=14%  Similarity=0.027  Sum_probs=69.2

Q ss_pred             EEEEEEeeecCCcCCCCCCCCHHHHHHHHHHHHh--Hhhcc------c-CC----CCC-CCcc-CCCCCCceEeeeEEec
Q 029000            3 PWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQ--TRFYK------D-FP----PHP-KEQV-YGFETPSTMKPTQWSY   67 (200)
Q Consensus         3 ~~~I~v~G~~gHas~P~~g~NAi~~aa~~l~~l~--~~~~~------~-~~----~~~-~~~~-~~~~~~~t~~~g~i~~   67 (200)
                      +++|+++|+++|+|.|+.|+|||..+++++.++.  +...+      . +.    ... .... .......++++|.|+ 
T Consensus       244 ~~~i~v~G~~aHss~p~~G~NAi~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~t~nvg~I~-  322 (447)
T TIGR01887       244 TATITLEGKSAHGSAPEKGINAATYLALFLAQLNLAGGAKAFLQFLAEYLHEDHYGEKLGIDFHDDVSGDLTMNVGVID-  322 (447)
T ss_pred             EEEEEEEeeecccCCCccCccHHHHHHHHHHhccCchhHHHHHHHHHHhcCCCCccccCCCcccCCCcCCcEEEEEEEE-
Confidence            6899999999999999999999999999999986  21000      0 00    000 0000 001234678999998 


Q ss_pred             CCCccceeCCeEEEEEEEeCCCCCCHHHHHHHHHHHH
Q 029000           68 PGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYV  104 (200)
Q Consensus        68 gg~~~NviP~~a~~~~diR~~~~~~~e~i~~~i~~~~  104 (200)
                      ++     +|++|++++|+|++++++.+++.+++.+.+
T Consensus       323 ~g-----~p~~~~~~~d~R~~p~~~~e~~~~~i~~~~  354 (447)
T TIGR01887       323 YE-----NAEAGLIGLNVRYPVGNDPDTMLKNELAKE  354 (447)
T ss_pred             Ee-----CCcEEEEEEEEecCCCCCHHHHHHHHHHHh
Confidence            55     389999999999999999998777776443

This model represents a clade of probable zinc dipeptidases, closely related to the characterized non-specific dipeptidase, PepV. Many enzymes in this clade have been given names including the terms "Xaa-His" and "carnosinase" due to the early mis-characterization of the Lactobacillus delbrueckii PepV enzyme. These names are likely too specific.

>PRK15026 aminoacyl-histidine dipeptidase; Provisional

Probab=98.99  E-value=1.4e-09  Score=97.02  Aligned_cols=85  Identities=22%  Similarity=0.235  Sum_probs=72.1

Q ss_pred             eEEEEEEee-ecCCcC-CCCCCC-CHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCe
Q 029000            2 IPWKLHVTG-KLFHSG-LPHKAI-NPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGE   78 (200)
Q Consensus         2 ~~~~I~v~G-~~gHas-~P~~g~-NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~   78 (200)
                      .+++|+++| ++|||+ .|+.|+ |||..+++++.++..                   ..+++++.|+ ||.+.|+||++
T Consensus       202 ~~~~i~v~Gl~ggHsG~~i~~g~~nAi~~la~~l~~~~~-------------------~~~~~v~~i~-GG~~~NaIp~~  261 (485)
T PRK15026        202 ETFKLTLKGLKGGHSGGEIHVGLGNANKLLVRFLAGHAE-------------------ELDLRLIDFN-GGTLRNAIPRE  261 (485)
T ss_pred             eEEEEEEECCCCcCChHHHCCCCccHHHHHHHHHHHhHh-------------------hCCeEEEEEe-CCCccCCCCCC
Confidence            368999999 999999 799999 999999999987431                   1467899999 99999999999


Q ss_pred             EEEEEEEeCCCCCCHHHHHHHHHHHHHH
Q 029000           79 CTVSGDVRLTPFYNVTDVMKRLQEYVDD  106 (200)
Q Consensus        79 a~~~~diR~~~~~~~e~i~~~i~~~~~~  106 (200)
                      |++.+++|....+..+++.+.+.+.+.+
T Consensus       262 a~a~i~~~~~~~~~~~~~~~~~~~~~~~  289 (485)
T PRK15026        262 AFATIAVAADKVDALKSLVNTYQEILKN  289 (485)
T ss_pred             cEEEEEEChhHHHHHHHHHHHHHHHHHH
Confidence            9999999988777777777777666653

>PRK08554 peptidase; Reviewed

Probab=98.13  E-value=4.6e-06  Score=73.63  Aligned_cols=93  Identities=23%  Similarity=0.249  Sum_probs=53.6

Q ss_pred             cccee---CCeEEEEEEEeCCCCCCHHHHHHHHHHHHHHHhhccc-ccc-cccCcccccCCCccccccceeee---c---
Q 029000           71 GINQI---PGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIE-KLD-TRGPVSKYVLPDENIRGRHVLSL---H---  139 (200)
Q Consensus        71 ~~Nvi---P~~a~~~~diR~~~~~~~e~i~~~i~~~~~~~~~~v~-~~~-~~~~~~~~~~~d~~l~~~~~~~~---~---  139 (200)
                      ..|++   |++|++++|+|+.+ .+.+++.++|++.++.....++ ++. ....++.+++.|+++...+....   +   
T Consensus       301 ~~n~~~i~~g~a~~~~DiR~~~-~~~e~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~~~~~~~g~~~  379 (438)
T PRK08554        301 TPNVYSFAEGKHVLKLDIRAMS-YSKEDIERTLKEVLEFNLPEAEVEIRTNEKAGYLFTPPDEEIVKVALRVLKELGEDA  379 (438)
T ss_pred             ccceEEecCCeEEEEEEEEecC-CCHHHHHHHHHHHhhccCCCceEEEEeccCCCCcCCCCChHHHHHHHHHHHHhCCCc
Confidence            34555   99999999999987 6889999999998865311121 111 11234556666766433221110   1   


Q ss_pred             --CCCCccccccccccccccccccccce
Q 029000          140 --YLTLGRDDFRIFPLRWQRHKIKFGRL  165 (200)
Q Consensus       140 --~~~~~~eDf~~~~~~~~~~~~~fG~~  165 (200)
                        ....|+-|.+++... ....+.|||.
T Consensus       380 ~~~~~~GgtDa~~~~~~-Gip~v~~Gp~  406 (438)
T PRK08554        380 EPVEGPGASDSRYFTPY-GVKAIDFGPK  406 (438)
T ss_pred             EEEecCCchHHHHHHhc-CCCceEECCC
Confidence              123466788888432 1122457775

>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase

Probab=96.38  E-value=0.0027  Score=56.67  Aligned_cols=100  Identities=11%  Similarity=-0.006  Sum_probs=62.3

Q ss_pred             ceEeeeEEecCCCccceeCCeEEEEEEEeCCCCCCHHHHHHHHHHHHHHHhhcccccccccCcccccCCCccccccc---
Q 029000           58 STMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGRH---  134 (200)
Q Consensus        58 ~t~~~g~i~~gg~~~NviP~~a~~~~diR~~~~~~~e~i~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~~l~~~~---  134 (200)
                      .++++|.++ .      .|+++.+.+|+|++++.+.+++.+.+++.++..+.+++..  ...++..++.|+++...+   
T Consensus       338 ~t~n~g~i~-~------~~~~~~~~i~~R~~~~~~~~~i~~~i~~~~~~~~~~v~~~--~~~~p~~~~~d~plv~~l~~a  408 (477)
T TIGR01893       338 SSLNLGVVK-T------KENKVIFTFLIRSSVESDKDYVTEKIESIAKLAGARVEVS--AGYPSWQPDPQSNLLDTARKV  408 (477)
T ss_pred             eeeeEEEEE-E------cCCEEEEEEEeCCCCchhHHHHHHHHHHHhhhcCeEEEEe--cCCCcccCCCCCHHHHHHHHH
Confidence            566777777 3      3889999999999999999999999999988554444321  123334456777643322   


Q ss_pred             -eeeecC-----CCCccccccccccccc-ccccccccee
Q 029000          135 -VLSLHY-----LTLGRDDFRIFPLRWQ-RHKIKFGRLK  166 (200)
Q Consensus       135 -~~~~~~-----~~~~~eDf~~~~~~~~-~~~~~fG~~~  166 (200)
                       ..+++.     ...|+-|.++|...++ -..+.|||+.
T Consensus       409 ~~~~~g~~~~~~~~~Ggtd~~~~~~~~~~i~~v~~Gp~~  447 (477)
T TIGR01893       409 YSEMFGEDPEVKVIHAGLECGIISSKIPDIDMISIGPNI  447 (477)
T ss_pred             HHHHHCCCCeEEEeecCccHHHHHhhCCCceEEEeCCCC
Confidence             111111     1234456777766542 1136778764

>COG2195 PepD Di- and tripeptidases [Amino acid transport and metabolism]

Probab=96.22  E-value=0.0018  Score=56.68  Aligned_cols=94  Identities=16%  Similarity=0.178  Sum_probs=70.9

Q ss_pred             eEEEEEEeeecCCcCC-CCCCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCeEE
Q 029000            2 IPWKLHVTGKLFHSGL-PHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECT   80 (200)
Q Consensus         2 ~~~~I~v~G~~gHas~-P~~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~a~   80 (200)
                      +.+++++.|+.+|++. +....||+..+.++...+..   ++.+           ..++...|..+ .++..|.+.+++.
T Consensus       218 ~~~~~~~~g~~~h~~~a~~~~i~a~~~a~e~~~~~~~---~~~~-----------e~t~~~~Gv~~-~~~~~~~V~~~s~  282 (414)
T COG2195         218 AAVRATIVGPNVHPGSAKGKMINALLLAAEFILELPL---EEVP-----------ELTEGPEGVYH-LGDSTNSVEETSL  282 (414)
T ss_pred             heeeeeeeccCcCccchHHHHhhHHHhhhhhhhcCCc---cccc-----------ccccccceEEe-ccccccchhhhhh
Confidence            5688999999999875 66779999988888776543   1211           12445567778 8889999999999


Q ss_pred             EEEEEeCCCCCCHHHHHHHHHHHHHHHhhc
Q 029000           81 VSGDVRLTPFYNVTDVMKRLQEYVDDINEN  110 (200)
Q Consensus        81 ~~~diR~~~~~~~e~i~~~i~~~~~~~~~~  110 (200)
                      +...+|.......+...+.+++.+++...+
T Consensus       283 ~~~~iR~~d~~~~~s~~~~~~~~~~~~~~~  312 (414)
T COG2195         283 NLAIIRDFDNLLFRARKDSMKDVVEEMAAS  312 (414)
T ss_pred             hhhhhhhcchhHHHHhHHHHHHHHHHHHHH
Confidence            999999999877777777777766665443

>PRK15026 aminoacyl-histidine dipeptidase; Provisional

Probab=95.15  E-value=0.012  Score=52.88  Aligned_cols=95  Identities=7%  Similarity=-0.045  Sum_probs=59.7

Q ss_pred             CccceeCCeEEEEEEEeCCCCCCHHHHHHHHHHHHHHHhhcccccccccCcccccCCCccccccceeee----cC-----
Q 029000           70 GGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGRHVLSL----HY-----  140 (200)
Q Consensus        70 ~~~NviP~~a~~~~diR~~~~~~~e~i~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~~l~~~~~~~~----~~-----  140 (200)
                      +..+...+.+++.+++|++++.+.+++.++++++.+..+.+++..  ...++-+.++|+++...+..++    +.     
T Consensus       349 g~v~~~~~~~~i~~~~Rs~~~~~~~~i~~~i~~~~~~~g~~~~~~--~~~p~w~~~~ds~lv~~l~~~y~e~~G~~~~~~  426 (485)
T PRK15026        349 GVVTMTDNNVEIHCLIRSLIDSGKDYVVSMLDSLGKLAGAKTEAK--GAYPGWQPDANSPVMHLVRETYQRLFNKTPNIQ  426 (485)
T ss_pred             EEEEEeCCEEEEEEEecCCCchHHHHHHHHHHHHHHHcCcEEEEe--CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCeEE
Confidence            344566788999999999999999999999999876655544322  1233345667776544332221    11     


Q ss_pred             CCCcccccccccccc-cccccccccee
Q 029000          141 LTLGRDDFRIFPLRW-QRHKIKFGRLK  166 (200)
Q Consensus       141 ~~~~~eDf~~~~~~~-~~~~~~fG~~~  166 (200)
                      ..-|+=|-++|.... ....+.|||..
T Consensus       427 ~ihaglEcG~~~~~~p~i~~VsfGP~~  453 (485)
T PRK15026        427 IIHAGLECGLFKKPYPEMDMVSIGPTI  453 (485)
T ss_pred             EEEEEehHHHHHhhCCCCCEEEECCCC
Confidence            112445556666543 22478999875

>COG4187 RocB Arginine degradation protein (predicted deacylase) [Amino acid transport and metabolism]

Probab=90.32  E-value=0.57  Score=41.44  Aligned_cols=95  Identities=17%  Similarity=0.191  Sum_probs=60.6

Q ss_pred             EEEeeecCCcCCCCCCCCHHHHHHHHHHHHhHh--hcccCCCCCCCccCCCCCCceEeeeEEecCCCccce-eCCeEEEE
Q 029000            6 LHVTGKLFHSGLPHKAINPLELAMEALKVIQTR--FYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQ-IPGECTVS   82 (200)
Q Consensus         6 I~v~G~~gHas~P~~g~NAi~~aa~~l~~l~~~--~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~Nv-iP~~a~~~   82 (200)
                      .-+.|+..|++.|..|+||-..++++..+|+-.  +.++.....      ..+|+.+.---+   -+..|| .|.++.+.
T Consensus       231 f~vvG~etHvG~~f~Gvnan~maSei~~~le~N~~l~dr~~Ge~------t~PPs~L~qkDl---Ke~Y~VqTp~~a~~~  301 (553)
T COG4187         231 FFVVGCETHVGYPFEGVNANFMASEITRRLELNADLADRVDGEI------TPPPSCLEQKDL---KESYNVQTPERAWLY  301 (553)
T ss_pred             eEEEeeccccCCcccCCCHHHHHHHHHHHhhcChhhhhhhCCee------CCCcHhhhhhhh---hhhccccCcchhhhh
Confidence            457899999999999999999999999998732  122211110      011111111111   234555 47788888


Q ss_pred             EEEeCCCCCCHHHHHHHHHHHHHHHhhc
Q 029000           83 GDVRLTPFYNVTDVMKRLQEYVDDINEN  110 (200)
Q Consensus        83 ~diR~~~~~~~e~i~~~i~~~~~~~~~~  110 (200)
                      +|+= ..+.+.+++.+++++.++..+.+
T Consensus       302 fN~l-~h~~ta~~~~d~l~~~a~~A~~e  328 (553)
T COG4187         302 FNWL-YHSRTAKELFDRLKEEAETAAEE  328 (553)
T ss_pred             heeh-hhcCCHHHHHHHHHHHHHHHHHH
Confidence            8874 44677888888888777765543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	200
3pfo_A	433	Putative acetylornithine deacetylase; metal bindin	2e-14
2rb7_A	364	Peptidase, M20/M25/M40 family; YP_387682.1, CO-cat	3e-14
3tx8_A	369	Succinyl-diaminopimelate desuccinylase; peptidase,	1e-12
3ct9_A	356	Acetylornithine deacetylase; NP_812461.1, A putati	4e-11
2f7v_A	369	Aectylcitrulline deacetylase; alpha/beta, hydrolas	8e-10
1cg2_A	393	Carboxypeptidase G2; metallocarboxypeptidase, hydr	2e-07
3isz_A	377	Succinyl-diaminopimelate desuccinylase; DAPE, Zn-b	1e-05
1lfw_A	470	PEPV; hydrolase, dipeptidase; HET: AEP; 1.80A {Bac	2e-05
1vgy_A	393	Succinyl-diaminopimelate desuccinylase; structural	3e-05
3rza_A	396	Tripeptidase; phosphorylase/hydrolase-like, struct	3e-05

>3pfo_A Putative acetylornithine deacetylase; metal binding, merops M20A family, amino-acid biosynthesis, metallopeptidase; 1.90A {Rhodopseudomonas palustris} Length = 433

 Score = 70.1 bits (172), Expect = 2e-14
 Identities = 16/121 (13%), Positives = 31/121 (25%), Gaps = 8/121 (6%)

Query: 4   WKLHVTGKLFHSGLPHKAINPLELAM---EALKVIQTRFYKDFPPHPKEQVYGFETPSTM 60
           ++L V G   H        + +  AM    A +             P       + P   
Sbjct: 218 FRLRVRGTPVHVAYSETGTSAILSAMHLIRAFEEYTKELNAQAVRDP--WFGQVKNPIKF 275

Query: 61  KPTQWSYPGG-GINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGP 119
                   GG   +     C +   + L       + M+ +++ + D       L     
Sbjct: 276 NVGIIK--GGDWASSTAAWCELDCRLGLLTGDTPQEAMRGIEKCLADAQATDSFLSENPA 333

Query: 120 V 120
            
Sbjct: 334 E 334

>2rb7_A Peptidase, M20/M25/M40 family; YP_387682.1, CO-catalytic metallopeptidase, peptidase family M20/M25/M40, structural genomics; HET: MSE PGE PG4; 1.60A {Desulfovibrio desulfuricans subsp} Length = 364

 Score = 68.8 bits (169), Expect = 3e-14
 Identities = 21/104 (20%), Positives = 42/104 (40%), Gaps = 12/104 (11%)

Query: 4   WKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPT 63
            KL  TGK  H   P   +N ++L ME    ++T F ++   H            T+   
Sbjct: 180 IKLTCTGKAAHGARPWMGVNAVDLLMEDYTRLKTLFAEENEDHW---------HRTVNLG 230

Query: 64  QWSYPGG-GINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDD 106
           +     G   N++P       ++R+T   +   ++ ++++ V  
Sbjct: 231 RIR--AGESTNKVPDVAEGWFNIRVTEHDDPGALIDKIRKTVSG 272

>3tx8_A Succinyl-diaminopimelate desuccinylase; peptidase, structural genomics, joint center for structural JCSG; 2.97A {Corynebacterium glutamicum} Length = 369

 Score = 64.6 bits (158), Expect = 1e-12
 Identities = 12/102 (11%), Positives = 29/102 (28%), Gaps = 7/102 (6%)

Query: 4   WKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPT 63
            K+   G   HS       N +      +  +      +                 +   
Sbjct: 181 IKVTAHGVRAHSARSWLGDNAMHKLSPIISKVAAYKAAEVNIDG------LTYREGLNIV 234

Query: 64  QWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVD 105
                G   N IP    ++ + R  P  ++ + ++ + E ++
Sbjct: 235 FCE-SGVANNVIPDLAWMNLNFRFAPNRDLNEAIEHVVETLE 275

>3ct9_A Acetylornithine deacetylase; NP_812461.1, A putative zinc peptidase, peptidase family M20 structural genomics; 2.31A {Bacteroides thetaiotaomicron vpi-5482} Length = 356

 Score = 59.9 bits (146), Expect = 4e-11
 Identities = 19/108 (17%), Positives = 38/108 (35%), Gaps = 14/108 (12%)

Query: 4   WKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPT 63
             +  TGK  H+       N +   +  +   +   Y+     P         P  M  T
Sbjct: 178 LDVTATGKAGHAARDE-GDNAIYKVLNDIAWFRD--YRFEKESP------LLGPVKMSVT 228

Query: 64  QWSYPGGGI--NQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINE 109
             +    G   N +P +CT   D+R    Y+  D+   +++++    +
Sbjct: 229 VIN---AGTQHNVVPDKCTFVVDIRSNELYSNEDLFAEIRKHIACDAK 273

>2f7v_A Aectylcitrulline deacetylase; alpha/beta, hydrolase; 1.75A {Xanthomonas campestris} PDB: 2f8h_A Length = 369

 Score = 56.1 bits (136), Expect = 8e-10
 Identities = 19/128 (14%), Positives = 34/128 (26%), Gaps = 11/128 (8%)

Query: 4   WKLHVTGKLFH-SGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKP 62
             +   G+  H SG    A + L  AM           +         + G         
Sbjct: 174 VLMRFAGRAGHASGKQDPAASALHQAMRWGGKAL-DHVESLAHARFGGLTG----LRFNI 228

Query: 63  TQWSYPGGGI--NQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPV 120
            +     GGI  N I     +    R  P  +V  ++     + D    + E+      +
Sbjct: 229 GRVD---GGIKANMIAPAAELRFGFRPLPSMDVDGLLATFAGFADPAAAHFEETFRGPSL 285

Query: 121 SKYVLPDE 128
               +   
Sbjct: 286 PSGDIARA 293

>1cg2_A Carboxypeptidase G2; metallocarboxypeptidase, hydrolase; 2.50A {Pseudomonas SP} SCOP: c.56.5.4 d.58.19.1 Length = 393

 Score = 48.9 bits (117), Expect = 2e-07
 Identities = 25/104 (24%), Positives = 39/104 (37%), Gaps = 17/104 (16%)

Query: 4   WKLHVTGKLFHSGL-PHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKP 62
            ++++TGK  H+G  P   +N L  A  +  V++T    D   +                
Sbjct: 197 VQVNITGKASHAGAAPELGVNALVEA--SDLVLRTMNIDDKAKNL-----------RFNW 243

Query: 63  TQWSYPGGG-INQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVD 105
           T      G   N IP   T++ DVR     +    MK L+E   
Sbjct: 244 TIAK--AGNVSNIIPASATLNADVRYARNEDFDAAMKTLEERAQ 285

>3isz_A Succinyl-diaminopimelate desuccinylase; DAPE, Zn-binding, metallopeptidase, structural genomics, PSI-2, protein struc initiative; 2.00A {Haemophilus influenzae} PDB: 3ic1_A Length = 377

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 21/127 (16%), Positives = 46/127 (36%), Gaps = 17/127 (13%)

Query: 5   KLHVTGKLFHSGLPHKAINPLELAMEAL-KVIQTRF---YKDFPPHPKEQVYGFETPSTM 60
            L++ G   H   PH A NP+  A   L ++   ++    + FP            P+++
Sbjct: 185 NLYIQGIQGHVAYPHLAENPIHKAALFLQELTTYQWDKGNEFFP------------PTSL 232

Query: 61  KPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPV 120
           +        G  N IP E  +  ++R         + +++ E ++  N     ++     
Sbjct: 233 QIANIHAGTGSNNVIPAELYIQFNLRYCTEVTDEIIKQKVAEMLEKHNLKYR-IEWNLSG 291

Query: 121 SKYVLPD 127
             ++   
Sbjct: 292 KPFLTKP 298

>1lfw_A PEPV; hydrolase, dipeptidase; HET: AEP; 1.80A {Bacteria} SCOP: c.56.5.4 d.58.19.1 Length = 470

 Score = 43.8 bits (103), Expect = 2e-05
 Identities = 17/140 (12%), Positives = 40/140 (28%), Gaps = 24/140 (17%)

Query: 3   PWKLHVTGKLFHSGLPHKAINPLELAMEAL-------------KVIQTRFYKDFPPHPKE 49
              + + G+  H+  P    N        L               +    ++DF      
Sbjct: 258 SADIVLIGQGAHASAPQVGKNSATFLALFLDQYAFAGRDKNFLHFLAEVEHEDFYGKKLG 317

Query: 50  QVYGFET--PSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDI 107
             +  +        P+ + Y         G+ ++  +VR     +   ++K++ +    I
Sbjct: 318 IFHHDDLMGDLASSPSMFDYE------HAGKASLLNNVRYPQGTDPDTMIKQVLDKFSGI 371

Query: 108 NENIEKLDTRGPVSKYVLPD 127
            + +       P   YV   
Sbjct: 372 LD-VTYNGFEEPH--YVPGS 388

>1vgy_A Succinyl-diaminopimelate desuccinylase; structural genomics, unknown function; HET: MSE; 1.90A {Neisseria meningitidis} SCOP: c.56.5.4 d.58.19.1 Length = 393

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 28/127 (22%), Positives = 47/127 (37%), Gaps = 17/127 (13%)

Query: 5   KLHVTGKLFHSGLPHKAINPLELAMEAL-KVIQTRF---YKDFPPHPKEQVYGFETPSTM 60
            L V GK  H   PH AINP+     AL ++ Q  +    + FP            P++ 
Sbjct: 188 NLTVKGKQGHIAYPHLAINPVHTFAPALLELTQEVWDEGNEYFP------------PTSF 235

Query: 61  KPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPV 120
           + +  +   G  N IPGE  V  + R +       + +R+   +D      + L      
Sbjct: 236 QISNINGGTGATNVIPGELNVKFNFRFSTESTEAGLKQRVHAILDKHGVQYD-LQWSCSG 294

Query: 121 SKYVLPD 127
             ++   
Sbjct: 295 QPFLTQA 301

>3rza_A Tripeptidase; phosphorylase/hydrolase-like, structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; HET: CIT PG4 PGE; 2.10A {Staphylococcus aureus subsp} Length = 396

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 11/106 (10%), Positives = 29/106 (27%), Gaps = 17/106 (16%)

Query: 5   KLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQ 64
              + GK  H+  P + ++ + +A +                        +         
Sbjct: 205 SAKIIGKTAHASTPKEGVSAINIAAK--------AISRMKLG--------QVDEITTANI 248

Query: 65  WSYPGGGI-NQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINE 109
             + GG   N +  E  +  + R      +   +K + +  +    
Sbjct: 249 GKFHGGSATNIVADEVILEAEARSHDPERIKTQVKHMTDVFETTAS 294

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	200
3ram_A	394	HMRA protein; two-domain, catalytic (alpha-beta-al	99.79
3io1_A	445	Aminobenzoyl-glutamate utilization protein; peptid	99.75
1ysj_A	404	Protein YXEP; M20 family peptidase, dinuclear meta	99.74
3n5f_A	408	L-carbamoylase, N-carbamoyl-L-amino acid hydrolase	99.73
2rb7_A	364	Peptidase, M20/M25/M40 family; YP_387682.1, CO-cat	99.72
1vgy_A	393	Succinyl-diaminopimelate desuccinylase; structural	99.71
1xmb_A	418	IAA-amino acid hydrolase homolog 2; structural gen	99.71
3pfo_A	433	Putative acetylornithine deacetylase; metal bindin	99.69
3isz_A	377	Succinyl-diaminopimelate desuccinylase; DAPE, Zn-b	99.68
3ct9_A	356	Acetylornithine deacetylase; NP_812461.1, A putati	99.68
3tx8_A	369	Succinyl-diaminopimelate desuccinylase; peptidase,	99.67
1z2l_A	423	Allantoate amidohydrolase; ALLC, purine cataboli a	99.63
3rza_A	396	Tripeptidase; phosphorylase/hydrolase-like, struct	99.63
2f7v_A	369	Aectylcitrulline deacetylase; alpha/beta, hydrolas	99.63
3gb0_A	373	Peptidase T; NP_980509.1, aminopeptidase PEPT, pep	99.61
2v8h_A	474	Beta-alanine synthase; amidohydrolase, alpha and b	99.59
1cg2_A	393	Carboxypeptidase G2; metallocarboxypeptidase, hydr	99.58
2pok_A	481	Peptidase, M20/M25/M40 family; M20 family peptidas	99.52
3ife_A	434	Peptidase T; metallopeptidase, aminopeptidase, hyd	99.46
3khx_A	492	Putative dipeptidase sacol1801; DAPE, metallopepti	99.45
3pfe_A	472	Succinyl-diaminopimelate desuccinylase; metal bind	99.45
3dlj_A	485	Beta-Ala-His dipeptidase; CNDP1, carnosine dipepti	99.43
2qyv_A	487	XAA-His dipeptidase; YP_718209.1, structural genom	99.39
1fno_A	417	Peptidase T; metallo peptidase, protease, hydrolas	99.36
3mru_A	490	Aminoacyl-histidine dipeptidase; metalloprotease,	99.35
1lfw_A	470	PEPV; hydrolase, dipeptidase; HET: AEP; 1.80A {Bac	99.25
2zog_A	479	Cytosolic non-specific dipeptidase; metallopeptida	99.24

>3ram_A HMRA protein; two-domain, catalytic (alpha-beta-alpha) motif, tetramerisat (alpha,beta,BETA,alpha), endoprotease, hydrolase; 2.70A {Staphylococcus aureus}

Probab=99.79  E-value=9.6e-20  Score=156.62  Aligned_cols=151  Identities=9%  Similarity=0.017  Sum_probs=112.3

Q ss_pred             eEEEEEEeeecCCcC-CCCCCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCeEE
Q 029000            2 IPWKLHVTGKLFHSG-LPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECT   80 (200)
Q Consensus         2 ~~~~I~v~G~~gHas-~P~~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~a~   80 (200)
                      .+++|+++|+++|+| .|+.|+||+.++++++..|+.+ ....+           ...+++++.++ +|.+.|+||++|+
T Consensus       171 ~~~~i~v~Gk~~Ha~~~P~~g~nAi~~a~~~i~~l~~l-~~~~~-----------~~~~~~~~~i~-gG~~~NvIP~~a~  237 (394)
T 3ram_A          171 DVLDVKFYGKSAHASENADEALNALDAMISYFNGVAQL-RQHIK-----------KDQRVHGVILD-GGKAANIIPDYTH  237 (394)
T ss_dssp             EEEEEEEECBCCBHHHHGGGCBCHHHHHHHHHHHHHHH-GGGSC-----------TTCEEEEEEEE-BCSCTTBCCSEEE
T ss_pred             eEEEEEEEccccccCCCCcCCCCHHHHHHHHHHHHHHH-HhhCC-----------CCCeeEEEEEE-CCCCCceeCCeEE
Confidence            589999999999999 9999999999999999999885 22211           12456677788 9999999999999


Q ss_pred             EEEEEeCCCCCCHHHHHHHHHHHHHHHhhc--cc-ccccccCcccccCCCccccccc-------e-ee-ecCCCCccccc
Q 029000           81 VSGDVRLTPFYNVTDVMKRLQEYVDDINEN--IE-KLDTRGPVSKYVLPDENIRGRH-------V-LS-LHYLTLGRDDF  148 (200)
Q Consensus        81 ~~~diR~~~~~~~e~i~~~i~~~~~~~~~~--v~-~~~~~~~~~~~~~~d~~l~~~~-------~-~~-~~~~~~~~eDf  148 (200)
                      +.+|+|+.+.++.+++.++|++++++.+..  ++ ++......++++.+|+.+...+       . .. .....+|++||
T Consensus       238 ~~~~iR~~~~~~~~~i~~~i~~~~~~~a~~~g~~~ei~~~~~~~~~~~~d~~l~~~~~~a~~~~G~~~~~~~~~~g~~D~  317 (394)
T 3ram_A          238 ARFYTRAMTRKELDILTEKVNQIARGAAIQTGCDYEFGPIQNGVNEFIKTPKLDDLFAKYAEEVGEAVIDDDFGYGSTDT  317 (394)
T ss_dssp             EEEEEEESSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEESSCCBCCCCCCHHHHHHHHHHHHHTTCCBCCSCCCCBCCTH
T ss_pred             EEEEEeeCCHHHHHHHHHHHHHHHHHHHHHhCCeEEEEEecCCCCCccCCHHHHHHHHHHHHHhCcccccCCCCcccccH
Confidence            999999999999999999999999876543  32 2221123445566776543211       1 11 12346789999


Q ss_pred             cccccccccccccccceeEEEEeeHH
Q 029000          149 RIFPLRWQRHKIKFGRLKCIFYLSIY  174 (200)
Q Consensus       149 ~~~~~~~~~~~~~fG~~~~~~~~~~~  174 (200)
                      ++|...++         ++++|+|..
T Consensus       318 ~~~~~~~P---------~~~~~~g~~  334 (394)
T 3ram_A          318 GNVSHVVP---------TIHPHIKIG  334 (394)
T ss_dssp             HHHTTTSC---------BCCCEEECS
T ss_pred             HHHHHHhc---------hheEEeeec
Confidence            99987665         667777754

>3io1_A Aminobenzoyl-glutamate utilization protein; peptidase_M20D superfamily, protein structure initiative II, NYSGXRC, structural genomics; 2.50A {Klebsiella pneumoniae subsp}

Probab=99.75  E-value=2.7e-18  Score=149.70  Aligned_cols=154  Identities=17%  Similarity=0.131  Sum_probs=111.9

Q ss_pred             eEEEEEEeeecCCc-CCCCCCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCeEE
Q 029000            2 IPWKLHVTGKLFHS-GLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECT   80 (200)
Q Consensus         2 ~~~~I~v~G~~gHa-s~P~~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~a~   80 (200)
                      .+++|+++|+++|| +.|+.|+||+.++++++.+|+.+ .+..           .+..++++|.++ +|.+.|+||++|+
T Consensus       230 ~~~~i~v~Gk~~HaGs~P~~g~nAi~~aa~~i~~l~~l-~~~~-----------~~~~~~~vg~i~-gG~~~NvIP~~a~  296 (445)
T 3io1_A          230 TKFDVQFSGVAAHAGGKPEDGRNALLAAAQAALGLHAI-PPHS-----------AGASRVNVGVMQ-AGTGRNVVPSSAL  296 (445)
T ss_dssp             EEEEEEEECCCSSTTCCGGGCCCHHHHHHHHHHHHHTC-CCBT-----------TBCEEEEEEEEE-ECSCTTSCCCEEE
T ss_pred             EEEEEEEEeecCCCCCCCcCCcCHHHHHHHHHHHHHHH-Hhhc-----------CCCeEEEEEEEe-cCCCCceeCCeEE
Confidence            48999999999998 79999999999999999999874 2221           124789999999 8899999999999


Q ss_pred             EEEEEeCCCCCCHHHHHHHHHHHHHHHhhc--cc-ccccccCcccccCCCccccccc----eeee-------cCC-CCcc
Q 029000           81 VSGDVRLTPFYNVTDVMKRLQEYVDDINEN--IE-KLDTRGPVSKYVLPDENIRGRH----VLSL-------HYL-TLGR  145 (200)
Q Consensus        81 ~~~diR~~~~~~~e~i~~~i~~~~~~~~~~--v~-~~~~~~~~~~~~~~d~~l~~~~----~~~~-------~~~-~~~~  145 (200)
                      +++|+|+++.++.+++.++|++++++.+..  ++ ++.. ...++++.+|+++...+    ....       ... .+|+
T Consensus       297 ~~~~iR~~~~~~~~~i~~~i~~~~~~~a~~~g~~~~i~~-~~~~~~~~~d~~l~~~~~~a~~~~~g~~~v~~~~~~~~g~  375 (445)
T 3io1_A          297 LKVETRGESEAINQYVFERAQHVVAGAAAMYEARYELRM-MGAATASAPSPAWVDYLREQAARVPGVQQAVDRIAAPAGS  375 (445)
T ss_dssp             EEEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEE-EEEECCCCCCHHHHHHHHHHHHHSTTCCBCBSSCCCCCBC
T ss_pred             EEEEEecCCHHHHHHHHHHHHHHHHHHHHHhCCeEEEEE-ecCCCCcCCCHHHHHHHHHHHHHhcCCccceecCCCCccH
Confidence            999999999999999999999999876543  22 1211 12234566676543211    1111       112 3789


Q ss_pred             ccccccccccccccccccceeEEEEeeH
Q 029000          146 DDFRIFPLRWQRHKIKFGRLKCIFYLSI  173 (200)
Q Consensus       146 eDf~~~~~~~~~~~~~fG~~~~~~~~~~  173 (200)
                      +||++|...++.    .|-+++++++|.
T Consensus       376 ~D~~~~~~~~P~----~gg~~~~~~~G~  399 (445)
T 3io1_A          376 EDATLMMARVQA----RGGLASYMIFGT  399 (445)
T ss_dssp             CTHHHHHHHHHH----TTCEEEEEEEEE
T ss_pred             HHHHHHHHHhcc----cCCceEEEEEeC
Confidence            999999876542    122346666664

>1ysj_A Protein YXEP; M20 family peptidase, dinuclear metal binding, structural GE PSI, protein structure initiative; 2.40A {Bacillus subtilis} SCOP: c.56.5.4 d.58.19.1

Probab=99.74  E-value=1.8e-18  Score=148.91  Aligned_cols=144  Identities=17%  Similarity=0.239  Sum_probs=93.1

Q ss_pred             eEEEEEEeeecCCcCCCCCCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCeEEE
Q 029000            2 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTV   81 (200)
Q Consensus         2 ~~~~I~v~G~~gHas~P~~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~a~~   81 (200)
                      .+++|+++|+++|||.|+.|.||+.++++++.+|+++..+...+         ....++++|.|+ +|.+.|+||++|++
T Consensus       204 ~~~~i~v~G~~~Has~P~~g~nAi~~~~~~i~~l~~~~~~~~~~---------~~~~~~~vg~i~-gG~~~NvIP~~a~~  273 (404)
T 1ysj_A          204 DRFEIVIKGKGGHASIPNNSIDPIAAAGQIISGLQSVVSRNISS---------LQNAVVSITRVQ-AGTSWNVIPDQAEM  273 (404)
T ss_dssp             EEEEEEEECC--------CCCCHHHHHHHHHHHHC--------------------CCEEEEEEEE-ECSCSSSCCSEEEE
T ss_pred             ceEEEEEEccCccccCcccCCCHHHHHHHHHHHHHHHHhhhcCC---------CCCcEEEEEEEE-cCCCCceecCceEE
Confidence            47999999999999999999999999999999998642221111         124689999999 89999999999999


Q ss_pred             EEEEeCCCCCCHHHHHHHHHHHHHHHhhc--cc-ccccccCcccccCCCccccccc---------eeeecCCCCcccccc
Q 029000           82 SGDVRLTPFYNVTDVMKRLQEYVDDINEN--IE-KLDTRGPVSKYVLPDENIRGRH---------VLSLHYLTLGRDDFR  149 (200)
Q Consensus        82 ~~diR~~~~~~~e~i~~~i~~~~~~~~~~--v~-~~~~~~~~~~~~~~d~~l~~~~---------~~~~~~~~~~~eDf~  149 (200)
                      ++|+|+++.++.+++.+++++++++.+..  ++ ++... ...++..+|+++...+         .........|++|++
T Consensus       274 ~~diR~~~~~~~~~i~~~i~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~g~g~~~~~~~~g~tD~~  352 (404)
T 1ysj_A          274 EGTVRTFQKEARQAVPEHMRRVAEGIAAGYGAQAEFKWF-PYLPSVQNDGTFLNAASEAAARLGYQTVHAEQSPGGEDFA  352 (404)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEE-EEECCEEECGGGHHHHHHHHHHTTCEEEECCCBSSCCTHH
T ss_pred             EEEEecCCHHHHHHHHHHHHHHHHHHHHHhCCEEEEEEe-cCCCCccCCHHHHHHHHHHHHHhcCCccccccCCccchHH
Confidence            99999999999999999999999876432  22 11111 1122334455432211         111111456889999


Q ss_pred             ccccccc
Q 029000          150 IFPLRWQ  156 (200)
Q Consensus       150 ~~~~~~~  156 (200)
                      +|...++
T Consensus       353 ~~~~~~p  359 (404)
T 1ysj_A          353 LYQEKIP  359 (404)
T ss_dssp             HHHTTSC
T ss_pred             HHHHHCC
Confidence            9976654

>3n5f_A L-carbamoylase, N-carbamoyl-L-amino acid hydrolase; hinge domain, M20 peptidase family, evolution, residue, dimerization domain; 2.75A {Bacillus stearothermophilus}

Probab=99.73  E-value=4.5e-18  Score=146.51  Aligned_cols=151  Identities=17%  Similarity=0.130  Sum_probs=110.3

Q ss_pred             eEEEEEEeeecCCc-CCC-CCCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCeE
Q 029000            2 IPWKLHVTGKLFHS-GLP-HKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGEC   79 (200)
Q Consensus         2 ~~~~I~v~G~~gHa-s~P-~~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~a   79 (200)
                      .+++|+++|+++|+ +.| +.|+||+.++++++.+|+++. +++           . +.++++|.|+.|+.+.|+||++|
T Consensus       213 ~~~~i~v~G~~~Hags~P~~~g~nAi~~aa~~i~~l~~~~-~~~-----------~-~~~~~vg~i~gG~~~~NvIP~~a  279 (408)
T 3n5f_A          213 IWVKFTIEGKAEHAGATPMSLRRDPMAAAAQIIIVIEEEA-RRT-----------G-TTVGTVGQLHVYPGGINVIPERV  279 (408)
T ss_dssp             EEEEEEEECCCEETTTSCTTTCCCHHHHHHHHHHHHHHHH-HHH-----------S-SCEEEEEEEEEESCCTTEECSEE
T ss_pred             eEEEEEEEEEcCcCCCCccccccCHHHHHHHHHHHHHHHH-Hhc-----------C-CcEEEEEEEEecCCCCcCcCCeE
Confidence            57899999999999 689 589999999999999998863 221           1 47899999993348999999999


Q ss_pred             EEEEEEeCCCCCCHHHHHHHHHHHHHHHhhc--cc-ccccccCcccccCCCccccccc----eee----ecCCCCccccc
Q 029000           80 TVSGDVRLTPFYNVTDVMKRLQEYVDDINEN--IE-KLDTRGPVSKYVLPDENIRGRH----VLS----LHYLTLGRDDF  148 (200)
Q Consensus        80 ~~~~diR~~~~~~~e~i~~~i~~~~~~~~~~--v~-~~~~~~~~~~~~~~d~~l~~~~----~~~----~~~~~~~~eDf  148 (200)
                      ++.+|+|+++.++.+++.++|++++++.+..  ++ ++.. ...++++.+|+++...+    ...    ......|++||
T Consensus       280 ~~~~diR~~~~~~~~~i~~~i~~~~~~~a~~~g~~~~i~~-~~~~p~~~~d~~l~~~~~~a~~~~g~~~~~~~~~ggtD~  358 (408)
T 3n5f_A          280 EFVLDLRDLKAEVRDQVWKAIAVRAETIAKERNVRVTTER-LQEMPPVLCSDEVKRAAEAACQKLGYPSFWLPSGAAHDS  358 (408)
T ss_dssp             EEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEE-EEEECCEECCHHHHHHHHHHHHHHTCCCCEEEESSCCTT
T ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhCCeEEEEE-ecCCCCcCCCHHHHHHHHHHHHHcCCCcccCCCcCchHH
Confidence            9999999999999999999999999875432  22 1111 11223345666543211    000    01134688999


Q ss_pred             cccccccccccccccceeEEEEeeHHH
Q 029000          149 RIFPLRWQRHKIKFGRLKCIFYLSIYK  175 (200)
Q Consensus       149 ~~~~~~~~~~~~~fG~~~~~~~~~~~~  175 (200)
                      ++|...++         ++++|+|..+
T Consensus       359 ~~~~~~iP---------~~~~~~~~~~  376 (408)
T 3n5f_A          359 VQLAPICP---------IGMIFVRSQD  376 (408)
T ss_dssp             TTTTTTSC---------EEEEEECCGG
T ss_pred             HHHHHHCC---------EEEEEeCCCC
Confidence            99987654         6788888764

>2rb7_A Peptidase, M20/M25/M40 family; YP_387682.1, CO-catalytic metallopeptidase, peptidase family M20/M25/M40, structural genomics; HET: MSE PGE PG4; 1.60A {Desulfovibrio desulfuricans subsp}

Probab=99.72  E-value=7e-18  Score=143.39  Aligned_cols=147  Identities=19%  Similarity=0.231  Sum_probs=106.7

Q ss_pred             eEEEEEEeeecCCcCCCCCCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCeEEE
Q 029000            2 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTV   81 (200)
Q Consensus         2 ~~~~I~v~G~~gHas~P~~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~a~~   81 (200)
                      .+++|+++|+++|||.|+.|+||+..+++++.+|+++. .  .+.     . .....++++|.++ +|...|+||++|++
T Consensus       178 ~~~~i~v~G~~~Ha~~P~~g~nAi~~~~~~i~~l~~~~-~--~~~-----~-~~~~~~~~vg~i~-gG~~~NviP~~a~~  247 (364)
T 2rb7_A          178 IDIKLTCTGKAAHGARPWMGVNAVDLLMEDYTRLKTLF-A--EEN-----E-DHWHRTVNLGRIR-AGESTNKVPDVAEG  247 (364)
T ss_dssp             EEEEEEEECBCEETTSGGGSBCHHHHHHHHHHHHHTTS-C--CCC-----T-TCCSCEEEEEEEE-ECSCTTEECSEEEE
T ss_pred             EEEEEEEEeecccCCCCCCCcCHHHHHHHHHHHHHhhc-c--chh-----h-cCCCceEEEEEEe-cCCcCcccCcceEE
Confidence            58999999999999999999999999999999998741 1  000     0 0024789999999 88999999999999


Q ss_pred             EEEEeCCCCCCHHHHHHHHHHHHHHHhhcccccccccCcccccCCCcccccccee---eecCCCCccccccccccccccc
Q 029000           82 SGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGRHVL---SLHYLTLGRDDFRIFPLRWQRH  158 (200)
Q Consensus        82 ~~diR~~~~~~~e~i~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~~l~~~~~~---~~~~~~~~~eDf~~~~~~~~~~  158 (200)
                      .+|+|+++.++.+++.+++++++++   +++ ..  ..++.+.+.|+++...+..   ..+....|++|+++|.. ....
T Consensus       248 ~~~iR~~~~~~~~~i~~~i~~~~~~---~v~-~~--~~~~~~~~~~~~l~~~~~~~~~~~g~~~~g~~D~~~~~~-~~~p  320 (364)
T 2rb7_A          248 WFNIRVTEHDDPGALIDKIRKTVSG---TVS-IV--RTVPVFLAADSPYTERLLALSGATAGKAHGASDARYLGE-NGLT  320 (364)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHCSS---EEE-EE--EEECCEECCCCHHHHHHHHHHCCEEEEESSCCGGGGTGG-GTCC
T ss_pred             EEEEeeCCCCCHHHHHHHHHHHhhh---hEE-ec--cCCccccCCCCHHHHHHHHHHHhcCCCCCCCchHHHHHh-cCCC
Confidence            9999999999999999999988754   333 11  1222344455554332211   22333578899999976 2223


Q ss_pred             cccccce
Q 029000          159 KIKFGRL  165 (200)
Q Consensus       159 ~~~fG~~  165 (200)
                      .+.|||.
T Consensus       321 ~v~~Gp~  327 (364)
T 2rb7_A          321 GVVWGAE  327 (364)
T ss_dssp             EEECCCC
T ss_pred             EEEECCC
Confidence            4557765

>1vgy_A Succinyl-diaminopimelate desuccinylase; structural genomics, unknown function; HET: MSE; 1.90A {Neisseria meningitidis} SCOP: c.56.5.4 d.58.19.1

Probab=99.71  E-value=1.5e-17  Score=142.55  Aligned_cols=151  Identities=20%  Similarity=0.265  Sum_probs=106.9

Q ss_pred             eEEEEEEeeecCCcCCCCCCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCC-ccceeCCeEE
Q 029000            2 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGG-GINQIPGECT   80 (200)
Q Consensus         2 ~~~~I~v~G~~gHas~P~~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~-~~NviP~~a~   80 (200)
                      .+++|+++|+++|||.|+.|+||+..+++++.+|+....+..  .      ....+.++++|.|+ +|. ..|+||++|+
T Consensus       185 ~~~~i~v~G~~~Ha~~P~~g~nAi~~~a~~i~~l~~~~~~~~--~------~~~~~~~~~v~~i~-gG~~~~NviP~~a~  255 (393)
T 1vgy_A          185 LSGNLTVKGKQGHIAYPHLAINPVHTFAPALLELTQEVWDEG--N------EYFPPTSFQISNIN-GGTGATNVIPGELN  255 (393)
T ss_dssp             EEEEEEEECBCEETTCGGGCBCHHHHHHHHHHHHHHCCCCCC--C------SSCCCCEEEEEEEE-ECCSCTTEECSEEE
T ss_pred             EEEEEEEEccCcccCCCccCCCHHHHHHHHHHHhhccccccc--c------cccCCCeEEEeeEc-CCCCCCcccCCeEE
Confidence            578999999999999999999999999999999987421110  0      11234688999999 665 8999999999


Q ss_pred             EEEEEeCCCCCCHHHHHHHHHHHHHHHhhccc-ccccccCcccccCCCccccccc----eeeec-----CCCCccccccc
Q 029000           81 VSGDVRLTPFYNVTDVMKRLQEYVDDINENIE-KLDTRGPVSKYVLPDENIRGRH----VLSLH-----YLTLGRDDFRI  150 (200)
Q Consensus        81 ~~~diR~~~~~~~e~i~~~i~~~~~~~~~~v~-~~~~~~~~~~~~~~d~~l~~~~----~~~~~-----~~~~~~eDf~~  150 (200)
                      +.+|+|+++.++.+++.++|+++++..+.+++ +...  ..+++..+|+++...+    ...++     ....|++|+++
T Consensus       256 ~~~diR~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~g~~D~~~  333 (393)
T 1vgy_A          256 VKFNFRFSTESTEAGLKQRVHAILDKHGVQYDLQWSC--SGQPFLTQAGKLTDVARAAIAETCGIEAELSTTGGTSDGRF  333 (393)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEE--EECCEECCSSHHHHHHHHHHHHHHSSCCEEECCSCCCTHHH
T ss_pred             EEEEEecCCCCCHHHHHHHHHHHHHHhCCCeEEEEec--CCCcccCCCcHHHHHHHHHHHHHcCCCceEecCCccchHHH
Confidence            99999999999999999999999987654433 1111  1123333455432211    11111     13357899999


Q ss_pred             ccc-ccccccccccce
Q 029000          151 FPL-RWQRHKIKFGRL  165 (200)
Q Consensus       151 ~~~-~~~~~~~~fG~~  165 (200)
                      |.. .++  .+.|||.
T Consensus       334 ~~~~~~P--~v~~Gp~  347 (393)
T 1vgy_A          334 IKAMAQE--LIELGPS  347 (393)
T ss_dssp             HGGGEEE--EEECCSB
T ss_pred             HHhCCCC--EEEECCC
Confidence            976 333  4567774

>1xmb_A IAA-amino acid hydrolase homolog 2; structural genomics, protein structure initiative, CESG AT5G56660, ILL2, indole-3-acetic acid, auxin; 2.00A {Arabidopsis thaliana} SCOP: c.56.5.4 d.58.19.1 PDB: 2q43_A

Probab=99.71  E-value=3.6e-17  Score=141.40  Aligned_cols=143  Identities=17%  Similarity=0.269  Sum_probs=86.1

Q ss_pred             eEEEEEEeeecCCcCCCCCCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCeEEE
Q 029000            2 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTV   81 (200)
Q Consensus         2 ~~~~I~v~G~~gHas~P~~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~a~~   81 (200)
                      .+++|+++|+++|||.|+.|+||+.++++++.+|+.+..+...+         ..+.++++|.|+ +|.+.|+||++|++
T Consensus       198 ~~~~i~v~G~~~Has~P~~g~nAi~~~a~~i~~l~~~~~~~~~~---------~~~~t~~vg~i~-gG~~~NvIP~~a~~  267 (418)
T 1xmb_A          198 GVFEAVITGKGGHAAIPQHTIDPVVAASSIVLSLQQLVSRETDP---------LDSKVVTVSKVN-GGNAFNVIPDSITI  267 (418)
T ss_dssp             EEEEEEEEEC---------CCHHHHHHHHHHHHHHTTCBCCSSG---------GGCEEEEEEEEC---------CCEEEE
T ss_pred             eeEEEEEEecCcccCCCccCCCHHHHHHHHHHHHHHHHhcccCC---------CCCcEEEEEEEE-ecCcCCcCCCeEEE
Confidence            57999999999999999999999999999999998742221110         123688999999 88999999999999


Q ss_pred             EEEEeCCCCCCHHHHHHHHHHHHHHHhhc--cc-ccc--cc-cCcccccCCCccccccc----e-------eeecCCCCc
Q 029000           82 SGDVRLTPFYNVTDVMKRLQEYVDDINEN--IE-KLD--TR-GPVSKYVLPDENIRGRH----V-------LSLHYLTLG  144 (200)
Q Consensus        82 ~~diR~~~~~~~e~i~~~i~~~~~~~~~~--v~-~~~--~~-~~~~~~~~~d~~l~~~~----~-------~~~~~~~~~  144 (200)
                      .+|+|+++  +.+++.+++++++++.+..  ++ ++.  .. .++++++.+|+++...+    .       ........|
T Consensus       268 ~~diR~~~--~~~~i~~~i~~~~~~~a~~~g~~~~~~~~~~~~~p~~~~~~d~~l~~~~~~~~~~~~g~~~~~~~~~~~g  345 (418)
T 1xmb_A          268 GGTLRAFT--GFTQLQQRVKEVITKQAAVHRCNASVNLTPNGREPMPPTVNNKDLYKQFKKVVRDLLGQEAFVEAAPVMG  345 (418)
T ss_dssp             EEEEEESS--CHHHHHHHHHHHHHHHHHHTTEEEEEESSGGGCCCBCCEEECHHHHHHHHHHHHHHHCGGGEEECCCBCC
T ss_pred             EEEEccCc--HHHHHHHHHHHHHHHHHHHhCCeEEEEEccCCcccCCCccCCHHHHHHHHHHHHHhcCCcceeccCCCCC
Confidence            99999999  8999999999999876532  22 111  11 11133455565532111    1       111234568


Q ss_pred             cccccccccccc
Q 029000          145 RDDFRIFPLRWQ  156 (200)
Q Consensus       145 ~eDf~~~~~~~~  156 (200)
                      ++|+++|...++
T Consensus       346 ~tD~~~~~~~~P  357 (418)
T 1xmb_A          346 SEDFSYFAETIP  357 (418)
T ss_dssp             CCTHHHHHTTSC
T ss_pred             cchHHHHHHHCC
Confidence            899999976554

>3pfo_A Putative acetylornithine deacetylase; metal binding, merops M20A family, amino-acid biosynthesis, metallopeptidase; 1.90A {Rhodopseudomonas palustris}

Probab=99.69  E-value=4.1e-17  Score=141.26  Aligned_cols=161  Identities=12%  Similarity=0.140  Sum_probs=108.9

Q ss_pred             eEEEEEEeeecCCcCCCCCCCCHHHHHHHHHHHHhHhhcccC---CCCCCCccCCCCCCceEeeeEEecCCCccceeCCe
Q 029000            2 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDF---PPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGE   78 (200)
Q Consensus         2 ~~~~I~v~G~~gHas~P~~g~NAi~~aa~~l~~l~~~~~~~~---~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~   78 (200)
                      .+++|+++|+++|+|.|+.|+||+..+++++.+|+++..+..   ...+  .......+.++++|.|+ +|.+.|+||++
T Consensus       216 ~~~~i~v~G~~~Ha~~p~~g~nAi~~~~~~i~~l~~l~~~~~~~~~~~~--~~~~~~~~~~~~vg~i~-gG~~~NvIP~~  292 (433)
T 3pfo_A          216 VWFRLRVRGTPVHVAYSETGTSAILSAMHLIRAFEEYTKELNAQAVRDP--WFGQVKNPIKFNVGIIK-GGDWASSTAAW  292 (433)
T ss_dssp             EEEEEEEECCCCBGGGGGGSCCHHHHHHHHHHHHHHHHHHHHHHGGGCT--TTTTSSSCSCEEEEEEE-ECSCTTBCCCE
T ss_pred             EEEEEEEEcCCCccCCCCcCcCHHHHHHHHHHHHHHHHHHhhhccccCc--cccccCCCceEEeeeEE-CCCCCcccCcE
Confidence            589999999999999999999999999999999987522100   0000  00001234689999999 88999999999


Q ss_pred             EEEEEEEeCCCCCCHHHHHHHHHHHHHHHhhc--------cc-ccccccCcccccCCCccccccc----eeeec-----C
Q 029000           79 CTVSGDVRLTPFYNVTDVMKRLQEYVDDINEN--------IE-KLDTRGPVSKYVLPDENIRGRH----VLSLH-----Y  140 (200)
Q Consensus        79 a~~~~diR~~~~~~~e~i~~~i~~~~~~~~~~--------v~-~~~~~~~~~~~~~~d~~l~~~~----~~~~~-----~  140 (200)
                      |++.+|+|++++++.+++.++|++++++.+..        ++ +......++...+.|+++...+    ...++     .
T Consensus       293 a~~~~~iR~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~p~~~~~~d~~~~~~~~~a~~~~~G~~~~~~  372 (433)
T 3pfo_A          293 CELDCRLGLLTGDTPQEAMRGIEKCLADAQATDSFLSENPAELVWSGFQADPAVCEPGGVAEDVLTAAHKAAFNAPLDAR  372 (433)
T ss_dssp             EEEEEEEEECTTCCHHHHHHHHHHHHHHHHTTCHHHHHSCCEEEEEEEEECCEECCTTCHHHHHHHHHHHHHHSSCCCEE
T ss_pred             EEEEEEEecCCCCCHHHHHHHHHHHHHHHhhhCcccccCCeEEEEecccCCcccCCCCCHHHHHHHHHHHHHhCCCCcee
Confidence            99999999999999999999999999887542        22 1110111222344555432211    11111     1


Q ss_pred             CCCccccccccccccccccccccce
Q 029000          141 LTLGRDDFRIFPLRWQRHKIKFGRL  165 (200)
Q Consensus       141 ~~~~~eDf~~~~~~~~~~~~~fG~~  165 (200)
                      ...|++|+++|........+-|||+
T Consensus       373 ~~~g~~D~~~~~~~~giP~v~~Gp~  397 (433)
T 3pfo_A          373 LSTAVNDTRYYSVDYGIPALCYGPY  397 (433)
T ss_dssp             EESSCCTHHHHHHTTCCCEEECCCC
T ss_pred             eeeeeccHHHHHhhCCCCEEEECCC
Confidence            2467899999976422223457765

>3isz_A Succinyl-diaminopimelate desuccinylase; DAPE, Zn-binding, metallopeptidase, structural genomics, PSI-2, protein struc initiative; 2.00A {Haemophilus influenzae} PDB: 3ic1_A

Probab=99.68  E-value=7e-17  Score=136.90  Aligned_cols=153  Identities=19%  Similarity=0.213  Sum_probs=99.6

Q ss_pred             eEEEEEEeeecCCcCCCCCCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCC-ccceeCCeEE
Q 029000            2 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGG-GINQIPGECT   80 (200)
Q Consensus         2 ~~~~I~v~G~~gHas~P~~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~-~~NviP~~a~   80 (200)
                      .+++++++|+++|+|.|+.|+||+..+++++.+|++...+..  .      ....+++++++.++ +|. ..|+||++|+
T Consensus       182 ~~~~i~~~G~~~Ha~~p~~g~nai~~~~~~i~~l~~~~~~~~--~------~~~~~~~~~v~~i~-gg~~~~nvip~~~~  252 (377)
T 3isz_A          182 ITGNLYIQGIQGHVAYPHLAENPIHKAALFLQELTTYQWDKG--N------EFFPPTSLQIANIH-AGTGSNNVIPAELY  252 (377)
T ss_dssp             EEEEEEEECC-------CGGGCHHHHHHHHHHHHHHCCCCCC--C------SSSCCCEEEEEEEE-ECCSCSSCCCSEEE
T ss_pred             EEEEEEEEccccccCCCccCcCHHHHHHHHHHHHHhcccccc--c------cccCCceeEEEEEE-CCCCCCcccCCceE
Confidence            478999999999999999999999999999999987421110  0      11345789999999 665 8999999999


Q ss_pred             EEEEEeCCCCCCHHHHHHHHHHHHHHHhhcccccccccCcccccCCCccccccc----eeeec-----CCCCcccccccc
Q 029000           81 VSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGRH----VLSLH-----YLTLGRDDFRIF  151 (200)
Q Consensus        81 ~~~diR~~~~~~~e~i~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~~l~~~~----~~~~~-----~~~~~~eDf~~~  151 (200)
                      +.+|+|+++.++.+++.+++++.+++.+.+++ +......++...+|+++...+    ....+     ....|+.|++++
T Consensus       253 ~~~diR~~~~~~~~~i~~~i~~~~~~~g~~~~-i~~~~~~~p~~~~~~~l~~~l~~a~~~~~g~~~~~~~~~g~tDa~~~  331 (377)
T 3isz_A          253 IQFNLRYCTEVTDEIIKQKVAEMLEKHNLKYR-IEWNLSGKPFLTKPGKLLDSITSAIEETIGITPKAETGGGTSDGRFI  331 (377)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEE-EEEEECCCCEECCTTHHHHHHHHHHHHHHSCCCEEEECSSCCSHHHH
T ss_pred             EEEEEecCCCCCHHHHHHHHHHHHHHcCCCeE-EEEEecCCCCcCCCCHHHHHHHHHHHHHhCCCCeeeccCcccHHHHH
Confidence            99999999999999999999999987655543 111111123334455432211    11111     123577999988


Q ss_pred             ccccccccccccce
Q 029000          152 PLRWQRHKIKFGRL  165 (200)
Q Consensus       152 ~~~~~~~~~~fG~~  165 (200)
                      ... ....+.|||+
T Consensus       332 ~~~-g~~~v~~Gp~  344 (377)
T 3isz_A          332 ALM-GAEVVEFGPL  344 (377)
T ss_dssp             HTT-TCEEEECCSB
T ss_pred             HHc-CCCEEEECCC
Confidence            653 3334456665

>3ct9_A Acetylornithine deacetylase; NP_812461.1, A putative zinc peptidase, peptidase family M20 structural genomics; 2.31A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.68  E-value=7.2e-17  Score=136.74  Aligned_cols=135  Identities=15%  Similarity=0.149  Sum_probs=98.2

Q ss_pred             eEEEEEEeeecCCcCCCCCCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCeEEE
Q 029000            2 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTV   81 (200)
Q Consensus         2 ~~~~I~v~G~~gHas~P~~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~a~~   81 (200)
                      .+++|+++|+++|||.| .|+||+..+++++.+|+.+. .+.. .      ....+.++++|.++ +|...|+||++|++
T Consensus       176 ~~~~i~~~G~~~Ha~~p-~g~nAi~~~~~~i~~l~~~~-~~~~-~------~~~~~~~~~vg~i~-gG~~~NviP~~a~~  245 (356)
T 3ct9_A          176 MVLDVTATGKAGHAARD-EGDNAIYKVLNDIAWFRDYR-FEKE-S------PLLGPVKMSVTVIN-AGTQHNVVPDKCTF  245 (356)
T ss_dssp             EEEEEEEECBCCBTTSS-CCBCTTGGGHHHHHHHHHCC-CSCC-B------TTTBSCEEEEEEEE-ECSSTTBCCSEEEE
T ss_pred             EEEEEEEECCCcccCCC-CCCCHHHHHHHHHHHHHhhh-cccc-c------ccCCCCcEEeeEEe-cCCcCCcCCCceEE
Confidence            58999999999999999 99999999999999998742 1111 0      01234789999999 88999999999999


Q ss_pred             EEEEeCCCCCCHHHHHHHHHHHHHHHhhcccccccccCcccccCCCccccccceeeec--CCCCccccccc
Q 029000           82 SGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGRHVLSLH--YLTLGRDDFRI  150 (200)
Q Consensus        82 ~~diR~~~~~~~e~i~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~~l~~~~~~~~~--~~~~~~eDf~~  150 (200)
                      .+|+|+++.++.+++.++++++++.   +++... ...++..+++|+++...+.....  ....|++||+.
T Consensus       246 ~~~iR~~~~~~~~~~~~~i~~~~~~---~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~tD~~~  312 (356)
T 3ct9_A          246 VVDIRSNELYSNEDLFAEIRKHIAC---DAKARS-FRLNSSRIDEKHPFVQKAVKMGRIPFGSPTLSDQAL  312 (356)
T ss_dssp             EEEEECCTTCCHHHHHHHHHHHCCS---EEEESC-SCSCCEECCTTSHHHHHHHHTTCCCEEECSCCGGGG
T ss_pred             EEEEeeCCCCCHHHHHHHHHHHhhC---eEEEee-ccCCCCCCCCCCHHHHHHHHHhcCCcccccccchhh
Confidence            9999999999999999999988754   333110 11223345566665433321111  12457899984

>3tx8_A Succinyl-diaminopimelate desuccinylase; peptidase, structural genomics, joint center for structural JCSG; 2.97A {Corynebacterium glutamicum}

Probab=99.67  E-value=1.2e-17  Score=141.71  Aligned_cols=154  Identities=12%  Similarity=0.097  Sum_probs=104.2

Q ss_pred             eEEEEEEeeecCCcCCCCCCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCeEEE
Q 029000            2 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTV   81 (200)
Q Consensus         2 ~~~~I~v~G~~gHas~P~~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~a~~   81 (200)
                      .+++|+++|+++|+|.|+.|+||+..+++++.+|++...+... .     .+.....++++|.|+ +|.+.|+||++|++
T Consensus       179 ~~~~i~v~G~~~Ha~~p~~g~nAi~~~a~~i~~l~~~~~~~~~-~-----~~~~~~~~~~vg~i~-gG~~~NvIP~~a~~  251 (369)
T 3tx8_A          179 LRIKVTAHGVRAHSARSWLGDNAMHKLSPIISKVAAYKAAEVN-I-----DGLTYREGLNIVFCE-SGVANNVIPDLAWM  251 (369)
T ss_dssp             EEEEEEEECBCCBTTSGGGSBCTGGGGHHHHHHHHHCCCCEEE-E-----TTEEEECEEEEEEEE-ECSBTTBCCSEEEE
T ss_pred             EEEEEEEeeeccccCCCCcCcCHHHHHHHHHHHHHhhcccccc-c-----CCcccCceEEEEEEE-CCCCCccccCcEEE
Confidence            5799999999999999999999999999999999875211100 0     000113689999999 88999999999999


Q ss_pred             EEEEeCCCCCCHHHHHHHHHHHHHHHh---hcccccccccCcccccCCCccccccceeeec----CCCCccccccccccc
Q 029000           82 SGDVRLTPFYNVTDVMKRLQEYVDDIN---ENIEKLDTRGPVSKYVLPDENIRGRHVLSLH----YLTLGRDDFRIFPLR  154 (200)
Q Consensus        82 ~~diR~~~~~~~e~i~~~i~~~~~~~~---~~v~~~~~~~~~~~~~~~d~~l~~~~~~~~~----~~~~~~eDf~~~~~~  154 (200)
                      .+|+|+++.++.+++.++|++++++.+   .+++ +....+.. +...|+++...+....+    ....|++|+++|...
T Consensus       252 ~~diR~~~~~~~~~v~~~i~~~~~~~~~~g~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~ggtD~~~~~~~  329 (369)
T 3tx8_A          252 NLNFRFAPNRDLNEAIEHVVETLELDGQDGIEWA-VEDGAGGA-LPGLGQQVTSGLIDAVGREKIRAKFGWTDVSRFSAM  329 (369)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHTTTTTSTTEEEE-EEEEECCB-CCCTTSHHHHHHHHHHCGGGEEECCSCCTHHHHHTT
T ss_pred             EEEEecCCCCCHHHHHHHHHHHHHhcccCCeEEE-EEecCCCC-CCCCCCHHHHHHHHHcCCCCCcccccccchHHHhhC
Confidence            999999999999999999999987643   2222 21111222 23334432211110011    134678999999653


Q ss_pred             cccccccccce
Q 029000          155 WQRHKIKFGRL  165 (200)
Q Consensus       155 ~~~~~~~fG~~  165 (200)
                       ....+.|||+
T Consensus       330 -giP~~~~Gpg  339 (369)
T 3tx8_A          330 -GIPALNFGAG  339 (369)
T ss_dssp             -TCCEEEECSS
T ss_pred             -CCCEEEECCC
Confidence             1222345553

>1z2l_A Allantoate amidohydrolase; ALLC, purine cataboli allantoin utilization, structural genomics, PSI, Pro structure initiative; HET: 1AL; 2.25A {Escherichia coli} SCOP: c.56.5.4 d.58.19.1 PDB: 2imo_A

Probab=99.63  E-value=1.4e-16  Score=137.68  Aligned_cols=142  Identities=15%  Similarity=0.137  Sum_probs=101.4

Q ss_pred             eEEEEEEeeecCCcC-CCC-CCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCeE
Q 029000            2 IPWKLHVTGKLFHSG-LPH-KAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGEC   79 (200)
Q Consensus         2 ~~~~I~v~G~~gHas-~P~-~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~a   79 (200)
                      .+++|+++|+++||| .|+ .|+||+..+++++.+|+++..+ ..           +..++++|.|+.++.+.|+||++|
T Consensus       216 ~~~~i~v~G~~~Ha~~~P~~~g~nAi~~~a~~i~~l~~~~~~-~~-----------~~~~~~vg~i~gg~~~~NvIP~~a  283 (423)
T 1z2l_A          216 RRYTVTLNGESNHAGTTPMGYRRDTVYAFSRICHQSVEKAKR-MG-----------DPLVLTFGKVEPRPNTVNVVPGKT  283 (423)
T ss_dssp             EEEEEEEECCCEETTTSCGGGCCCHHHHHHHHHHHHHHHHHH-HC-----------TTCEEECCCEEEESCCTTEECCEE
T ss_pred             eEEEEEEEeEcCCCCCCccccCcCHHHHHHHHHHHHHHHHHh-cC-----------CCceEEEEEEeecCCcceeECCEE
Confidence            578999999999999 795 8999999999999999875322 11           136889999993348999999999


Q ss_pred             EEEEEEeCCCCCCHHHHHHHHHHHHHHHhhc--cc-ccccccCcccccCCCccccccce--------eeecCCCCccccc
Q 029000           80 TVSGDVRLTPFYNVTDVMKRLQEYVDDINEN--IE-KLDTRGPVSKYVLPDENIRGRHV--------LSLHYLTLGRDDF  148 (200)
Q Consensus        80 ~~~~diR~~~~~~~e~i~~~i~~~~~~~~~~--v~-~~~~~~~~~~~~~~d~~l~~~~~--------~~~~~~~~~~eDf  148 (200)
                      ++.+|+|+++.++.+++.+++++++++.+..  ++ ++... ...++..+|+++...+.        ........|++|+
T Consensus       284 ~~~~d~R~~~~~~~~~i~~~i~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~ggtD~  362 (423)
T 1z2l_A          284 TFTIDCRHTDAAVLRDFTQQLENDMRAICDEMDIGIDIDLW-MDEEPVPMNKELVATLTELCEREKLNYRVMHSGAGHDA  362 (423)
T ss_dssp             EEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEE-EEECCEECCHHHHHHHHHHHHHTTCCEEEEEESSCCTH
T ss_pred             EEEEEeeCCCHHHHHHHHHHHHHHHHHHHHHhCCeEEEEEe-cCCCCccCCHHHHHHHHHHHHHcCCCeEEecCCCcccH
Confidence            9999999999999999999999998875432  22 11111 11233445655332110        0011134678999


Q ss_pred             cccccccc
Q 029000          149 RIFPLRWQ  156 (200)
Q Consensus       149 ~~~~~~~~  156 (200)
                      ++|...++
T Consensus       363 ~~~~~~~p  370 (423)
T 1z2l_A          363 QIFAPRVP  370 (423)
T ss_dssp             HHHTTTSC
T ss_pred             HHHHhhCC
Confidence            99976543

>3rza_A Tripeptidase; phosphorylase/hydrolase-like, structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; HET: CIT PG4 PGE; 2.10A {Staphylococcus aureus subsp}

Probab=99.63  E-value=1.6e-16  Score=136.35  Aligned_cols=137  Identities=13%  Similarity=0.185  Sum_probs=99.9

Q ss_pred             eEEEEEEeeecCCcCCCCCCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCeEEE
Q 029000            2 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTV   81 (200)
Q Consensus         2 ~~~~I~v~G~~gHas~P~~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~a~~   81 (200)
                      .+++|+++|+++|+|.|+.|+||+..+++++.+|+..   ++.           ...++++|.++ +|.+.|+||++|++
T Consensus       202 ~~~~i~v~G~~~Ha~~p~~g~nai~~~~~~i~~l~~~---~~~-----------~~~~~~vg~i~-gG~~~NvIP~~a~~  266 (396)
T 3rza_A          202 MLISAKIIGKTAHASTPKEGVSAINIAAKAISRMKLG---QVD-----------EITTANIGKFH-GGSATNIVADEVIL  266 (396)
T ss_dssp             EEEEEEEECBCCBTTSGGGSBCHHHHHHHHHHHSCCE---EEE-----------TTEEEEEEEEE-ECSCTTBCCCEEEE
T ss_pred             EEEEEEEEeEecCCCCccccccHHHHHHHHHHhcccC---CCC-----------CCceeeeeEEe-cCCCCcccCceEEE
Confidence            5789999999999999999999999999999988642   111           23678999999 88999999999999


Q ss_pred             EEEEeCCCCCCHHHHHHHHHHHHHHHhhc--cc-ccc-cccCcccccCCCccccccce-------ee-ecCCCCcccccc
Q 029000           82 SGDVRLTPFYNVTDVMKRLQEYVDDINEN--IE-KLD-TRGPVSKYVLPDENIRGRHV-------LS-LHYLTLGRDDFR  149 (200)
Q Consensus        82 ~~diR~~~~~~~e~i~~~i~~~~~~~~~~--v~-~~~-~~~~~~~~~~~d~~l~~~~~-------~~-~~~~~~~~eDf~  149 (200)
                      .+|+|+.+.++.+++.+++++++++.+..  ++ ++. ....++...++|+++...+.       .. ......|++|++
T Consensus       267 ~~diR~~~~~~~~~~~~~i~~~~~~~a~~~g~~~~i~~~~~~p~~~~~~d~~l~~~~~~~~~~~g~~~~~~~~~g~tD~~  346 (396)
T 3rza_A          267 EAEARSHDPERIKTQVKHMTDVFETTASELGGKAEVTVEQSYPGFKINDNEAVVKIAQESARNLGLSANTIISGGGSDGS  346 (396)
T ss_dssp             EEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEECCEECCTTSHHHHHHHHHHHHTTCCCCEEECSSCCHHH
T ss_pred             EEEEEeCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEEEeccCCcccCCCcHHHHHHHHHHHHcCCCceecccceeccHH
Confidence            99999999999999999999998876543  21 111 11111222355665432210       00 011346889999


Q ss_pred             cccc
Q 029000          150 IFPL  153 (200)
Q Consensus       150 ~~~~  153 (200)
                      +|..
T Consensus       347 ~~~~  350 (396)
T 3rza_A          347 IINT  350 (396)
T ss_dssp             HHGG
T ss_pred             HHhh
Confidence            9865

>2f7v_A Aectylcitrulline deacetylase; alpha/beta, hydrolase; 1.75A {Xanthomonas campestris} PDB: 2f8h_A

Probab=99.63  E-value=1.8e-16  Score=134.78  Aligned_cols=156  Identities=14%  Similarity=0.074  Sum_probs=99.4

Q ss_pred             eEEEEEEeeecCCcCCCC-CCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCeEE
Q 029000            2 IPWKLHVTGKLFHSGLPH-KAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECT   80 (200)
Q Consensus         2 ~~~~I~v~G~~gHas~P~-~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~a~   80 (200)
                      .+++|+++|+++|+|.|+ .|+||+..+++++.+|+.+. .++....   ...... .++++|.++ +|...|+||++|+
T Consensus       172 ~~~~i~v~G~~~Ha~~p~~~g~nAi~~~~~~i~~l~~~~-~~~~~~~---~~~~~~-~~~~vg~i~-gG~~~NviP~~a~  245 (369)
T 2f7v_A          172 SSVLMRFAGRAGHASGKQDPAASALHQAMRWGGKALDHV-ESLAHAR---FGGLTG-LRFNIGRVD-GGIKANMIAPAAE  245 (369)
T ss_dssp             EEEEEEEECCCC------CTTSCHHHHHHHHHHHHHHHH-HHTTTCE---ETTEES-CEEEEEEEE-ECSSTTSCCSEEE
T ss_pred             EEEEEEEeeeCcccCCCCcCCCCHHHHHHHHHHHHHhhh-hhhcccc---cCcccC-CceEEEEee-cCCCCCcCCCceE
Confidence            579999999999999999 99999999999999998752 2221100   000011 589999999 8899999999999


Q ss_pred             EEEEEeCCCCCCHHHHHHHHHHHHHHHhhcccccccccCcccccCCC-ccccccc----eeeec----CCCCcccccccc
Q 029000           81 VSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPD-ENIRGRH----VLSLH----YLTLGRDDFRIF  151 (200)
Q Consensus        81 ~~~diR~~~~~~~e~i~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d-~~l~~~~----~~~~~----~~~~~~eDf~~~  151 (200)
                      +.+|+|+++.++.+++.+++++++++.+.+++ +.......++...+ +++...+    ...++    ....|++|+++|
T Consensus       246 ~~~diR~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~g~~~~~~~~g~~D~~~~  324 (369)
T 2f7v_A          246 LRFGFRPLPSMDVDGLLATFAGFADPAAAHFE-ETFRGPSLPSGDIARAEERRLAARDVADALDLPIGNAVDFWTEASLF  324 (369)
T ss_dssp             EEEEEECCTTCCHHHHHHHHHHTCSSCCSEEE-EEEEECCBSCSSHHHHHHHHHHHHHHHHHTTCCBCCCBSSCCTHHHH
T ss_pred             EEEEEeeCCCCCHHHHHHHHHHHHHHhcCceE-EEeccCCCCccCCCCCHHHHHHHHHHHHhhCCCCCccccccCcHHHH
Confidence            99999999999999999999998876543333 11110112222223 4332111    11111    235678999999


Q ss_pred             ccccccccccccce
Q 029000          152 PLRWQRHKIKFGRL  165 (200)
Q Consensus       152 ~~~~~~~~~~fG~~  165 (200)
                      ... ....+.|||+
T Consensus       325 ~~~-g~p~v~~Gpg  337 (369)
T 2f7v_A          325 SAG-GYTALVYGPG  337 (369)
T ss_dssp             HHT-TCCEEECCSS
T ss_pred             hhC-CCCEEEECCC
Confidence            763 2233466663

>3gb0_A Peptidase T; NP_980509.1, aminopeptidase PEPT, peptidase family M20/M25/M structural genomics, joint center for structural genomics; 2.04A {Bacillus cereus atcc 10987}

Probab=99.61  E-value=1.5e-16  Score=135.15  Aligned_cols=137  Identities=11%  Similarity=0.111  Sum_probs=99.5

Q ss_pred             eEEEEEEeeecCCcC-CCCCCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCeEE
Q 029000            2 IPWKLHVTGKLFHSG-LPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECT   80 (200)
Q Consensus         2 ~~~~I~v~G~~gHas-~P~~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~a~   80 (200)
                      .+++|+++|+++|++ .|+.|+||+..+++++.+|+..   ++.           ...++++|.++ +|.+.|+||++|+
T Consensus       181 ~~~~i~~~G~~~Ha~~~p~~g~nai~~~~~~i~~l~~~---~~~-----------~~~~~~vg~i~-gG~~~Nvip~~~~  245 (373)
T 3gb0_A          181 AKVNAIIRGKTAHAGVAPEKGVSAITIAAKAIAKMPLG---RID-----------SETTANIGRFE-GGTQTNIVCDHVQ  245 (373)
T ss_dssp             EEEEEEEECBCCBTTTCGGGSBCHHHHHHHHHTTSCCE---EEE-----------TTEEEEEEEEE-ECSCTTBCCCEEE
T ss_pred             EEEEEEEEeEecCCCCChhhCcCHHHHHHHHHHhcccc---cCC-----------CccccceeEEe-cCcccccccceEE
Confidence            578999999999999 8999999999999999887641   111           23678999999 8899999999999


Q ss_pred             EEEEEeCCCCCCHHHHHHHHHHHHHHHhhc--cc-ccc-cccCcccccCCCccccccce-------e-eecCCCCccccc
Q 029000           81 VSGDVRLTPFYNVTDVMKRLQEYVDDINEN--IE-KLD-TRGPVSKYVLPDENIRGRHV-------L-SLHYLTLGRDDF  148 (200)
Q Consensus        81 ~~~diR~~~~~~~e~i~~~i~~~~~~~~~~--v~-~~~-~~~~~~~~~~~d~~l~~~~~-------~-~~~~~~~~~eDf  148 (200)
                      +.+|+|+.+.++.+++.+++++++++.+..  ++ ++. ....++...++|+++...+.       . .......|++|+
T Consensus       246 ~~~d~R~~~~~~~~~~~~~i~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~g~~D~  325 (373)
T 3gb0_A          246 IFAEARSLINEKMEAQVAKMKEAFETTAKEMGGHADVEVNVMYPGFKFADGDHVVEVAKRAAEKIGRTPSLHQSGGGSDA  325 (373)
T ss_dssp             EEEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEECCEECCTTCHHHHHHHHHHHHTTCCCEEEECSSCCHH
T ss_pred             EEEEEecCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEecccCCcccCCCCHHHHHHHHHHHHhCCCceEecccCcchH
Confidence            999999999999999999999998876543  21 111 11112222345665432210       0 011134688999


Q ss_pred             ccccc
Q 029000          149 RIFPL  153 (200)
Q Consensus       149 ~~~~~  153 (200)
                      ++|..
T Consensus       326 ~~~~~  330 (373)
T 3gb0_A          326 NVIAG  330 (373)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            99965

>2v8h_A Beta-alanine synthase; amidohydrolase, alpha and beta protein, DI-zinc center, COMP N-carbamyl-beta-alanine, hydrolase; HET: BCN; 2.0A {Saccharomyces kluyveri} PDB: 2v8d_A* 2vl1_A 2v8g_A 2v8v_A 1r43_A 1r3n_A

Probab=99.59  E-value=7.2e-16  Score=135.38  Aligned_cols=139  Identities=16%  Similarity=0.039  Sum_probs=101.3

Q ss_pred             eEEEEEEeeecCCcC-CCC-CCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCC-CccceeCCe
Q 029000            2 IPWKLHVTGKLFHSG-LPH-KAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPG-GGINQIPGE   78 (200)
Q Consensus         2 ~~~~I~v~G~~gHas-~P~-~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg-~~~NviP~~   78 (200)
                      .+++|+++|+++||| .|+ .|+||+..+++++.+|+.+..+.              ..++++|.|+ +| ++.|+||++
T Consensus       249 ~~~~i~v~G~~~Hsg~~P~~~g~nAi~~~a~~i~~l~~~~~~~--------------~~t~~vg~i~-gG~~~~NvIP~~  313 (474)
T 2v8h_A          249 NWQKVTVHGVGAHAGTTPWRLRKDALLMSSKMIVAASEIAQRH--------------NGLFTCGIID-AKPYSVNIIPGE  313 (474)
T ss_dssp             EEEEEEEECCCEETTTCCGGGCCCHHHHHHHHHHHHHHHHHHT--------------TCEEECCCEE-EESCCTTEECSE
T ss_pred             EEEEEEEEeecCCCCCCCcccCCCHHHHHHHHHHHHHHHHhhc--------------CCEEEEEEEE-ecCCCCceeCCE
Confidence            579999999999999 597 89999999999999998752221              2688999999 65 899999999


Q ss_pred             EEEEEEEeCCCCCCHHHHHHHHHHHHHHHhhc-----cc-ccccccCcccccCCCccccccce----------eeecCCC
Q 029000           79 CTVSGDVRLTPFYNVTDVMKRLQEYVDDINEN-----IE-KLDTRGPVSKYVLPDENIRGRHV----------LSLHYLT  142 (200)
Q Consensus        79 a~~~~diR~~~~~~~e~i~~~i~~~~~~~~~~-----v~-~~~~~~~~~~~~~~d~~l~~~~~----------~~~~~~~  142 (200)
                      |++.+|+|+++.++.+++.++|++.+++.+..     ++ ++... ..++++.+|+++...+.          .......
T Consensus       314 a~~~~diR~~~~~~~~~i~~~i~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~d~~l~~~~~~a~~~~G~~~~~~~~~~  392 (474)
T 2v8h_A          314 VSFTLDFRHPSDDVLATMLKEAAAEFDRLIKINDGGALSYESETL-QVSPAVNFHEVCIECVSRSAFAQFKKDQVRQIWS  392 (474)
T ss_dssp             EEEEEEEEESCHHHHHHHHHHHHHHHHHHTTCCTTCCCEEEEEEE-EEECCEECCHHHHHHHHHHHHHHSCGGGEEEEEE
T ss_pred             EEEEEEecCCChHHHHHHHHHHHHHHHHHHhhcccCCcEEEEEEe-cCCCCccCCHHHHHHHHHHHHHcCCCCcceecCC
Confidence            99999999999999999999999999875432     22 11111 12233445655332110          0111134


Q ss_pred             Cccccccccccccc
Q 029000          143 LGRDDFRIFPLRWQ  156 (200)
Q Consensus       143 ~~~eDf~~~~~~~~  156 (200)
                      .|+.|+++|...++
T Consensus       393 ~ggtD~~~~~~~~P  406 (474)
T 2v8h_A          393 GAGHDSCQTAPHVP  406 (474)
T ss_dssp             SSCCTHHHHTTTSC
T ss_pred             cCCccHHHHHhhCC
Confidence            67899999977643

>1cg2_A Carboxypeptidase G2; metallocarboxypeptidase, hydrolase; 2.50A {Pseudomonas SP} SCOP: c.56.5.4 d.58.19.1

Probab=99.58  E-value=6.6e-16  Score=132.22  Aligned_cols=91  Identities=24%  Similarity=0.255  Sum_probs=80.9

Q ss_pred             eEEEEEEeeecCCcC-CCCCCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCeEE
Q 029000            2 IPWKLHVTGKLFHSG-LPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECT   80 (200)
Q Consensus         2 ~~~~I~v~G~~gHas-~P~~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~a~   80 (200)
                      .+++|+++|+++||+ .|+.|+||+..+++++.+|+.+ .+.            ....++++|.++ +|...|+||++|+
T Consensus       195 ~~~~i~v~G~~~Hag~~p~~g~nAi~~~~~~i~~l~~~-~~~------------~~~~~~~v~~i~-gG~~~NvIP~~a~  260 (393)
T 1cg2_A          195 AYVQVNITGKASHAGAAPELGVNALVEASDLVLRTMNI-DDK------------AKNLRFNWTIAK-AGNVSNIIPASAT  260 (393)
T ss_dssp             EEEEEEEECBCEETTSCGGGSBCHHHHHHHHHHHHGGG-CBT------------TTTEEEEEEEEE-ECSSTTEECSEEE
T ss_pred             EEEEEEEEeeecccCCCcccCcCHHHHHHHHHHHHHhh-hCc------------ccCceEEEEEEe-CCCCCCEECcccE
Confidence            579999999999996 7999999999999999999874 221            123689999999 8899999999999


Q ss_pred             EEEEEeCCCCCCHHHHHHHHHHHHHH
Q 029000           81 VSGDVRLTPFYNVTDVMKRLQEYVDD  106 (200)
Q Consensus        81 ~~~diR~~~~~~~e~i~~~i~~~~~~  106 (200)
                      +.+|+|+++.++.+++.++|++++++
T Consensus       261 ~~~~iR~~~~~~~~~i~~~i~~~~~~  286 (393)
T 1cg2_A          261 LNADVRYARNEDFDAAMKTLEERAQQ  286 (393)
T ss_dssp             EEEEEEESSHHHHHHHHHHHHHHHTS
T ss_pred             EEEEEeeCChhhHHHHHHHHHHHHhc
Confidence            99999999999999999999998875

>2pok_A Peptidase, M20/M25/M40 family; M20 family peptidase, metallo protein, MCSG, structural GENO PSI-2, protein structure initiative; HET: BGC; 1.90A {Streptococcus pneumoniae}

Probab=99.52  E-value=1.4e-14  Score=127.14  Aligned_cols=162  Identities=14%  Similarity=0.061  Sum_probs=104.0

Q ss_pred             eEEEEEEeeec--CCcCCCCCCCCHHHHHHHHHHHHhHhhc----------------------ccCCC------------
Q 029000            2 IPWKLHVTGKL--FHSGLPHKAINPLELAMEALKVIQTRFY----------------------KDFPP------------   45 (200)
Q Consensus         2 ~~~~I~v~G~~--gHas~P~~g~NAi~~aa~~l~~l~~~~~----------------------~~~~~------------   45 (200)
                      .+++|+++|++  +||+.|+.|.||+..+++++.+|++...                      .+++.            
T Consensus       228 ~~~~i~v~G~~g~~Hss~p~~g~nAi~~~a~~i~~l~~~~~~i~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (481)
T 2pok_A          228 VTFDAKVKSADVDIHSSYGGVVESAPWYLLQALQSLRAADGRILVEGLYEEVQEPNEREMALLETYGQRNPEEVSRIYGL  307 (481)
T ss_dssp             EEEEEEEECSSSCEEGGGTTTBCCHHHHHHHHHHHTBCTTSCBCCTTTGGGSCCCCHHHHHHHHHHSCSCGGGHHHHHTC
T ss_pred             EEEEEEEecCCCCccccCCCCCCCHHHHHHHHHHHhhCCCCceeccchhhcCCCCCHHHHHHHHhcCcccHHHHHHhhCc
Confidence            57899999999  8999999999999999999999875310                      00000            


Q ss_pred             CCCCc-cCC------CCCCceEeeeEEecCCC----ccceeCCeEEEEEEEeCCCCCCHHHHHHHHHHHHHHHhhc-cc-
Q 029000           46 HPKEQ-VYG------FETPSTMKPTQWSYPGG----GINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINEN-IE-  112 (200)
Q Consensus        46 ~~~~~-~~~------~~~~~t~~~g~i~~gg~----~~NviP~~a~~~~diR~~~~~~~e~i~~~i~~~~~~~~~~-v~-  112 (200)
                      ..+.. ..+      .....++++|.|+ +|.    ..|+||++|++.+|+|++++++.+++.++|+++++..+.. ++ 
T Consensus       308 ~~~~~~~~g~~~~~~~~~~~t~~vg~i~-gG~~~~~~~NvIP~~a~~~~diR~~~~~~~~~v~~~i~~~~~~~~~~~~~v  386 (481)
T 2pok_A          308 ELPLLQEERMAFLKRFFFDPALNIEGIQ-SGYQGQGVKTILPAEASAKLEVRLVPGLEPHDVLEKIRKQLDKNGFDKVEL  386 (481)
T ss_dssp             CSCCSSCSHHHHHHHHHHSCEEEEEEEE-EECCSSSCCCEECSEEEEEEEEEECTTCCHHHHHHHHHHHHHHTTCTTEEE
T ss_pred             ccccccccchhHHHHHhhcCeEeEEeee-cCCCCCCCCeeccCeeEEEEEEEeCCCCCHHHHHHHHHHHHHhhCCCceEE
Confidence            00000 000      0023688999999 654    7899999999999999999999999999999999876421 22 


Q ss_pred             ccccccCcccccCCCccccccc----eeeec-----CCCCccc-cccccccccccccccccce
Q 029000          113 KLDTRGPVSKYVLPDENIRGRH----VLSLH-----YLTLGRD-DFRIFPLRWQRHKIKFGRL  165 (200)
Q Consensus       113 ~~~~~~~~~~~~~~d~~l~~~~----~~~~~-----~~~~~~e-Df~~~~~~~~~~~~~fG~~  165 (200)
                      ++.. ..++..++.|+++...+    ...++     ....|+. |+++|........+.|||+
T Consensus       387 ~~~~-~~p~~~~~~d~~l~~~~~~a~~~~~g~~~~~~~~~gg~~D~~~~~~~~g~p~v~~G~g  448 (481)
T 2pok_A          387 YYTL-GEMSYRSDMSAPAILNVIELAKKFYPQGVSVLPTTAGTGPMHTVFDALEVPMVAFGLG  448 (481)
T ss_dssp             EEEE-EECCBCCCSCSHHHHHHHHHHTTTCTTCEEEESCBSSCCTHHHHHHHHCCCEEBCCSB
T ss_pred             EEcc-CCCcccCCCCCHHHHHHHHHHHHHcCCCccccccCCCCCchHHHHHHcCCCEEEecCC
Confidence            1111 12233455566532211    11111     1234555 9998875532223456664

>3ife_A Peptidase T; metallopeptidase, aminopeptidase, hydro metal-binding, metalloprotease, protease; HET: SUC; 1.55A {Bacillus anthracis}

Probab=99.46  E-value=5.9e-15  Score=128.03  Aligned_cols=137  Identities=15%  Similarity=0.058  Sum_probs=94.4

Q ss_pred             eEEEEEEeeecCCcC-CCCCCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCeEE
Q 029000            2 IPWKLHVTGKLFHSG-LPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECT   80 (200)
Q Consensus         2 ~~~~I~v~G~~gHas-~P~~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~a~   80 (200)
                      .+++|+++|+++||+ .|+.|+||+.++++++.+|++.   ..+.           ..+.++|.++ . +..|+||++|+
T Consensus       238 ~~~~i~v~G~~~Hag~~P~~g~nAi~~aa~~i~~l~~~---~~~~-----------~~~~~~g~i~-~-g~~n~iP~~a~  301 (434)
T 3ife_A          238 AGAKLTFNGTNTHPGTAKNKMRNATKLAMEFNGHLPVE---EAPE-----------YTEGYEGFYH-L-LSLNGDVEQSK  301 (434)
T ss_dssp             EEEEEEEECBCCCGGGCTTTCBCHHHHHHHHHHTSCTT---CSGG-----------GCCTTCCEEE-E-EEEEECSSEEE
T ss_pred             EEEEEEEEEEecCCCCCcccchhHHHHHHHHHHhcccc---cCCC-----------cceeeeEEEE-e-eeEeEecCeEE
Confidence            589999999999987 7999999999999999988763   1111           1233456666 3 35899999999


Q ss_pred             EEEEEeCCCCCCHHHHHHHHHHHHHHHhhc-----cc-ccccccCcc-cccCCCccccccce-------e-eecCCCCcc
Q 029000           81 VSGDVRLTPFYNVTDVMKRLQEYVDDINEN-----IE-KLDTRGPVS-KYVLPDENIRGRHV-------L-SLHYLTLGR  145 (200)
Q Consensus        81 ~~~diR~~~~~~~e~i~~~i~~~~~~~~~~-----v~-~~~~~~~~~-~~~~~d~~l~~~~~-------~-~~~~~~~~~  145 (200)
                      +.+|+|+++.++.+++.++|++++++.+..     ++ ++....+++ ..+++|+++...+.       . .......|+
T Consensus       302 ~~~diR~~~~~~~~~i~~~i~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~d~~l~~~~~~a~~~~G~~~~~~~~~gg  381 (434)
T 3ife_A          302 AYYIIRDFDRKNFEARKNTIENIVKQMQEKYGQDAVVLEMNDQYYNMLEKIEPVREIVDIAYEAMKSLNIEPNIHPIRGG  381 (434)
T ss_dssp             EEEEEEESSHHHHHHHHHHHHHHHHHHHHHHCGGGEEEEEEEEECCTHHHHGGGTHHHHHHHHHHHHTTCCCEECCBSSC
T ss_pred             EEEEEecCCHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEeecccchhccccCCHHHHHHHHHHHHHhCCCCEEeecccC
Confidence            999999999999999999999999865422     32 111111111 13556665432210       0 111234688


Q ss_pred             ccccccccc
Q 029000          146 DDFRIFPLR  154 (200)
Q Consensus       146 eDf~~~~~~  154 (200)
                      +|+++|...
T Consensus       382 tD~~~~~~~  390 (434)
T 3ife_A          382 TDGSQLSYM  390 (434)
T ss_dssp             CHHHHHHHT
T ss_pred             chHHHHhhC
Confidence            999999754

>3khx_A Putative dipeptidase sacol1801; DAPE, metallopeptidase, hydrolase, metal-bindin metalloprotease, protease; 2.30A {Staphylococcus aureus} PDB: 3ki9_A 3khz_A

Probab=99.45  E-value=4.6e-14  Score=124.47  Aligned_cols=149  Identities=13%  Similarity=0.090  Sum_probs=77.9

Q ss_pred             EEEEEEeeecCCcCCCCCCCCHHHHHHHHHHHHh------Hhh---cccCCCCCCCcc------CCCCCCceEeeeEEec
Q 029000            3 PWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQ------TRF---YKDFPPHPKEQV------YGFETPSTMKPTQWSY   67 (200)
Q Consensus         3 ~~~I~v~G~~gHas~P~~g~NAi~~aa~~l~~l~------~~~---~~~~~~~~~~~~------~~~~~~~t~~~g~i~~   67 (200)
                      +++|+++|+++|||.|+.|+|||..+++++.+|+      .+.   .+.+........      .......++++|.|+ 
T Consensus       281 ~~~i~v~GkaaHas~P~~G~NAi~~~a~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~d~~~G~~t~n~g~i~-  359 (492)
T 3khx_A          281 ILVLTVEGKAVHGMDPSIGVNAGLYLLKFLASLNLDNNAQAFVAFSNRYLFNSDFGEKMGMKFHTDVMGDVTTNIGVIT-  359 (492)
T ss_dssp             EEEEEEECBCCCC------BCHHHHHHHHHTTSCBCHHHHHHHHHHHHHTTTCTTSGGGTCC-------CCEEEEEEEE-
T ss_pred             eEEEEEEeEEcccCCCccCccHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCCccccCCccccCCcCccEEeeeEEE-
Confidence            7999999999999999999999999999999886      110   011100000000      011234678888888 


Q ss_pred             CCCccceeCCeEEEEEEEeCCCCCCHHHHHHHHHHHHHHHhhcccccccccCcccccCCCcccccccee----eec----
Q 029000           68 PGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGRHVL----SLH----  139 (200)
Q Consensus        68 gg~~~NviP~~a~~~~diR~~~~~~~e~i~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~~l~~~~~~----~~~----  139 (200)
                      ++.     |++|++.+|+|+++.++.+++.++++++++..+.+++. .. ..++.+.+.|+++...+..    ..+    
T Consensus       360 ~g~-----P~~a~~~idiR~~~~~~~~~v~~~i~~~~~~~g~~~~i-~~-~~~p~~~~~d~~lv~~l~~a~~~~~G~~~~  432 (492)
T 3khx_A          360 YDN-----ENAGLFGINLRYPEGFEFEKAMDRFANEIQQYGFEVKL-GK-VQPPHYVDKNDPFVQKLVTAYRNQTNDMTE  432 (492)
T ss_dssp             EET-----TTCCEEEEEEEECTTCCHHHHHHHHHHHHGGGTEEEEE-EE-EECCBCCGGGCHHHHHHHHHHHTTCC----
T ss_pred             Eec-----CCEEEEEEEeeCCCCCCHHHHHHHHHHHHHHcCCEEEE-ec-cCCceecCCCcHHHHHHHHHHHHHhCCCCe
Confidence            443     99999999999999999999999999998755444432 11 1223345566664332211    111    


Q ss_pred             -CCCCccccccccccccccccccccc
Q 029000          140 -YLTLGRDDFRIFPLRWQRHKIKFGR  164 (200)
Q Consensus       140 -~~~~~~eDf~~~~~~~~~~~~~fG~  164 (200)
                       ....|+.|.+++..     ++.|||
T Consensus       433 ~~~~gggtDa~~~~~-----~v~~G~  453 (492)
T 3khx_A          433 PYTIGGGTYARNLDK-----GVAFGA  453 (492)
T ss_dssp             --------------------------
T ss_pred             EEeeehhHHHHHhhC-----ceEECC
Confidence             12356789988864     466775

>3pfe_A Succinyl-diaminopimelate desuccinylase; metal binding, merops M20 familiy, phosphorylase/hydrolase-L structural genomics; HET: MSE; 1.50A {Legionella pneumophila subsp}

Probab=99.45  E-value=5.3e-14  Score=123.34  Aligned_cols=105  Identities=11%  Similarity=0.068  Sum_probs=77.9

Q ss_pred             EEEEEEeeecCCcCCCCCC-CCHHHHHHHHHHHHhHhhc---------ccCCC-------------------CCCC-ccC
Q 029000            3 PWKLHVTGKLFHSGLPHKA-INPLELAMEALKVIQTRFY---------KDFPP-------------------HPKE-QVY   52 (200)
Q Consensus         3 ~~~I~v~G~~gHas~P~~g-~NAi~~aa~~l~~l~~~~~---------~~~~~-------------------~~~~-~~~   52 (200)
                      +++|+++|+++|||.|+.+ .||+..+++++.+|++...         +.+++                   ..+. .+.
T Consensus       213 ~~~v~~~G~~~H~~~~~~~~~nai~~~~~~i~~l~~~~~~~i~i~gf~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (472)
T 3pfe_A          213 KLTVELINEGVHSGSASGIVADSFRVARQLISRIEDENTGEIKLPQLYCDIPDERIKQAKQCAEILGEQVYSEFPWIDSA  292 (472)
T ss_dssp             EEEEESCSSCBCHHHHTTTSCCHHHHHHHHHHHHBCTTTCCBCCGGGCCCCCHHHHHHHHHHHHHHGGGGTTTSCCCTTC
T ss_pred             EEEEEeCCCCcccCCCCCCCCCHHHHHHHHHHHhhCcCCCCEeCCCcccCCCCccHHHHHHHhhhccHHHHHhcccccCc
Confidence            3557779999999998855 5999999999999987521         00000                   0000 000


Q ss_pred             -CCCC-----------CceEeeeEEecCC----CccceeCCeEEEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Q 029000           53 -GFET-----------PSTMKPTQWSYPG----GGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDIN  108 (200)
Q Consensus        53 -~~~~-----------~~t~~~g~i~~gg----~~~NviP~~a~~~~diR~~~~~~~e~i~~~i~~~~~~~~  108 (200)
                       ....           ..++++|.|+ +|    ++.|+||++|++.+|+|+.+.++.+++.++|+++++..+
T Consensus       293 ~~~~~~~~~~~~~~~~~~tl~i~~i~-gG~~~g~a~NvIP~~a~~~~diR~~~~~~~~~i~~~i~~~~~~~~  363 (472)
T 3pfe_A          293 KPVIQDKQQLILNRTWRPALTVTGAD-GFPAIADAGNVMRPVTSLKLSMRLPPLVDPEAASVAMEKALTQNP  363 (472)
T ss_dssp             CCSCSCHHHHHHHHHTSCEEEEEEEE-SCCCTTTCCSCBCSEEEEEEEEEECTTCCHHHHHHHHHHHHHSSC
T ss_pred             cccccchHHHHHHhhcCCcEEEeeee-cCcCCCCCCCEeCCccEEEEEeecCCCCCHHHHHHHHHHHHHhhC
Confidence             0000           3689999999 54    789999999999999999999999999999999998643

>3dlj_A Beta-Ala-His dipeptidase; CNDP1, carnosine dipeptidase 1, structural genomics, structu genomics consortium, SGC, metallopeptidase M20 family; 2.26A {Homo sapiens}

Probab=99.43  E-value=1.3e-13  Score=121.13  Aligned_cols=105  Identities=17%  Similarity=0.171  Sum_probs=75.8

Q ss_pred             eEEEEEEeeecC--CcCCCCCCCCHHHHHHHHHHHHhHhhccc----CCC----CCCC--------ccCCCC--------
Q 029000            2 IPWKLHVTGKLF--HSGLPHKAINPLELAMEALKVIQTRFYKD----FPP----HPKE--------QVYGFE--------   55 (200)
Q Consensus         2 ~~~~I~v~G~~g--Has~P~~g~NAi~~aa~~l~~l~~~~~~~----~~~----~~~~--------~~~~~~--------   55 (200)
                      .+++|+++|+++  |||.  .|.||+.++..++..|+.+..+.    ++.    ..+.        ....+.        
T Consensus       225 ~~~~i~v~G~~~~~H~~~--~g~~a~~~~~~l~~~l~~l~~~~g~i~ipg~~~~v~p~~~~~~~~~~~~~~~~~~~~~~~  302 (485)
T 3dlj_A          225 SYFMVEVKCRDQDFHSGT--FGGILHEPMADLVALLGSLVDSSGHILVPGIYDEVVPLTEEEINTYKAIHLDLEEYRNSS  302 (485)
T ss_dssp             EEEEEEEESCSSCEETTT--STTSSCCHHHHHHHHHTTSBCTTSCBCSTTTTTTSCCCCHHHHHHHHTSCCCHHHHHHHH
T ss_pred             EEEEEEEEECCCCCcCCC--CCccccCHHHHHHHHHHhhCCCCCCEeCCCcccccCCCCHHHHHHHHhCCCCHHHHHHhc
Confidence            578999999999  9997  36666666666666665531110    000    0000        000000        


Q ss_pred             ------------------CCceEeeeEEecCC----CccceeCCeEEEEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 029000           56 ------------------TPSTMKPTQWSYPG----GGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINE  109 (200)
Q Consensus        56 ------------------~~~t~~~g~i~~gg----~~~NviP~~a~~~~diR~~~~~~~e~i~~~i~~~~~~~~~  109 (200)
                                        ...++++|.|+ +|    ++.|+||++|++.+|+|+.+.++.+++.++|+++++..+.
T Consensus       303 g~~~~~~~~~~~~~~~~~~~~~~~v~~i~-gG~~gp~a~NVIP~~a~~~~diR~~~~~~~~~v~~~i~~~~~~~a~  377 (485)
T 3dlj_A          303 RVEKFLFDTKEEILMHLWRYPSLSIHGIE-GAFDEPGTKTVIPGRVIGKFSIRLVPHMNVSAVEKQVTRHLEDVFS  377 (485)
T ss_dssp             TCSCCSCSSHHHHHHHHHTSCEEEEEEEE-SSCCSSSCCCEECSEEEEEEEEEECTTCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCcccccchHHHHHHHhcCCceEEEEEe-cCCcCCCCCceeCCeeEEEEEEEcCCCCCHHHHHHHHHHHHHHhcc
Confidence                              14679999999 77    8999999999999999999999999999999999988754

>2qyv_A XAA-His dipeptidase; YP_718209.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2, hydrolase; 2.11A {Haemophilus somnus 129PT}

Probab=99.39  E-value=2.7e-13  Score=119.18  Aligned_cols=67  Identities=19%  Similarity=0.239  Sum_probs=58.3

Q ss_pred             eEEEEEEee-ecCCcCCC-CCC-CCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCe
Q 029000            2 IPWKLHVTG-KLFHSGLP-HKA-INPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGE   78 (200)
Q Consensus         2 ~~~~I~v~G-~~gHas~P-~~g-~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~   78 (200)
                      .+++|+++| +++||+.| +.| .||+..+++++.+|+..  .              ...++++|.|+ +|.+.|+||++
T Consensus       202 ~~~~i~v~G~~~~Hsg~~~~~g~~nAi~~~~~~i~~l~~~--~--------------~~~~~~v~~i~-gG~~~NvIP~~  264 (487)
T 2qyv_A          202 HCYQVVLKGLRGGHSGVDIHTGRANAIKVLLRFLAELQQN--Q--------------PHFDFTLANIR-GGSIRNAIPRE  264 (487)
T ss_dssp             EEEEEEEECCCCCBTTTTTTSCCCCHHHHHHHHHHHHHHH--C--------------TTCCEEEEEEE-EESCTTBCCCC
T ss_pred             eEEEEEEEccCCccCCcccccCCCCHHHHHHHHHHHHhhc--c--------------CCCcEEEEEEe-CCCcCcccCCc
Confidence            468999999 89999987 776 79999999999999874  1              12468899999 88999999999


Q ss_pred             EEEEEEE
Q 029000           79 CTVSGDV   85 (200)
Q Consensus        79 a~~~~di   85 (200)
                      |++.+++
T Consensus       265 a~~~~~~  271 (487)
T 2qyv_A          265 SVATLVF  271 (487)
T ss_dssp             EEEEEEE
T ss_pred             eEEEEEe
Confidence            9999999

>1fno_A Peptidase T; metallo peptidase, protease, hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.56.5.4 d.58.19.1 PDB: 1vix_A

Probab=99.36  E-value=3.1e-13  Score=116.41  Aligned_cols=148  Identities=10%  Similarity=-0.006  Sum_probs=99.2

Q ss_pred             eEEEEEEeeecCCcC-CCCCCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCeEE
Q 029000            2 IPWKLHVTGKLFHSG-LPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECT   80 (200)
Q Consensus         2 ~~~~I~v~G~~gHas-~P~~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~a~   80 (200)
                      .+++|+++|+++|++ .|+.|+||+..+++++.+|+........         .....++++|.++ +|      |++|+
T Consensus       211 ~~~~i~~~G~~~Hs~~~p~~g~nAi~~~a~~i~~l~~~~~~~~~---------~~~~~~~~v~~i~-gG------p~~a~  274 (417)
T 1fno_A          211 ASVNIKIVGNNVHPGTAKGVMVNALSLAARIHAEVPADEAPETT---------EGYEGFYHLASMK-GT------VDRAE  274 (417)
T ss_dssp             EEEEEEEECBCCCGGGCTTTCBCHHHHHHHHHHTSCTTSSGGGC---------CTTCCEEEEEEEE-EC------SSEEE
T ss_pred             eeEEEEEEeeccCCCCCccccCCHHHHHHHHHHhhhccCCcccc---------cccccEEEEEEEe-ec------cCeEE
Confidence            578999999999999 6999999999999999988764211100         0123578889888 55      99999


Q ss_pred             EEEEEeCCCCCCHHHHHHHHHHHHHHHhhc------cc-ccccccCcc-cccCCCccccccc-------eee-ecCCCCc
Q 029000           81 VSGDVRLTPFYNVTDVMKRLQEYVDDINEN------IE-KLDTRGPVS-KYVLPDENIRGRH-------VLS-LHYLTLG  144 (200)
Q Consensus        81 ~~~diR~~~~~~~e~i~~~i~~~~~~~~~~------v~-~~~~~~~~~-~~~~~d~~l~~~~-------~~~-~~~~~~~  144 (200)
                      +.+|+|+++.++.+++.++|++++++.+..      ++ ++....++. ..+++|+++...+       ... ......|
T Consensus       275 ~~~d~R~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~g  354 (417)
T 1fno_A          275 MHYIIRDFDRKQFEARKRKMMEIAKKVGKGLHPDCYIELVIEDSYYNMREKVVEHPHILDIAQQAMRDCHITPEMKPIRG  354 (417)
T ss_dssp             EEEEEEESSHHHHHHHHHHHHHHHHHHTTTCCTTCCEEEEEEEEECCCHHHHHTSTHHHHHHHHHHHHTTCCCBCCCBSS
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEEeccccchhccccCCCHHHHHHHHHHHHcCCCceecccee
Confidence            999999999999999999999999886432      22 111110111 1234566543211       111 1123467


Q ss_pred             ccccccccccccccccccccee
Q 029000          145 RDDFRIFPLRWQRHKIKFGRLK  166 (200)
Q Consensus       145 ~eDf~~~~~~~~~~~~~fG~~~  166 (200)
                      ++|+++|... ....+.|||+.
T Consensus       355 gtD~~~~~~~-gip~v~~G~~~  375 (417)
T 1fno_A          355 GTDGAQLSFM-GLPCPNLFTGG  375 (417)
T ss_dssp             CCHHHHHTTT-TCCCCEECCSE
T ss_pred             ccchHhHHhc-CCCEEEEcCCC
Confidence            8999999763 12244577753

>3mru_A Aminoacyl-histidine dipeptidase; metalloprotease, homodimer, hydrolase; 3.00A {Vibrio alginolyticus}

Probab=99.35  E-value=6.9e-13  Score=116.91  Aligned_cols=81  Identities=22%  Similarity=0.210  Sum_probs=64.1

Q ss_pred             eEEEEEEee-ecCCcCC-CCCCC-CHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCe
Q 029000            2 IPWKLHVTG-KLFHSGL-PHKAI-NPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGE   78 (200)
Q Consensus         2 ~~~~I~v~G-~~gHas~-P~~g~-NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~   78 (200)
                      .+++|+++| ++|||+. |+.|+ ||+..+++++..|++.                   .+++++.|+ ||.+.|+||++
T Consensus       206 ~~~~i~v~G~~~gHs~~~p~~g~~nai~~~~~~l~~l~~~-------------------~~~~v~~i~-gG~~~NvIP~~  265 (490)
T 3mru_A          206 ITRQLTLKGLKGGHSGCDIHTGRGNANKLIGRFLAGHAQE-------------------LDLRLVEFR-GGSLRNAIPRE  265 (490)
T ss_dssp             EEEEEEEECCCCEETTTSSSSCCCCHHHHHHHHHHHHTTT-------------------TTCEEEEEE-ECSCTTEECCC
T ss_pred             eEEEEEEECCCCcccccccccCCcCHHHHHHHHHHHHHhc-------------------CcEEEEEEE-CCCCCcccCCc
Confidence            578999999 9999995 99999 9999999999987641                   246789999 89999999999


Q ss_pred             EEEEEEEeCCCCCCHHHHHHHHHH
Q 029000           79 CTVSGDVRLTPFYNVTDVMKRLQE  102 (200)
Q Consensus        79 a~~~~diR~~~~~~~e~i~~~i~~  102 (200)
                      |++.+++|..+.+..+++.+++.+
T Consensus       266 a~~~~~iR~~~~~~~~~~~~~~~~  289 (490)
T 3mru_A          266 AFVTVALPAENQDKLAELFNYYTE  289 (490)
T ss_dssp             EEEEEEEEGGGHHHHHHHHHHHHH
T ss_pred             cEEEEEECcccHHHHHHHHHHHHH
Confidence            999988886654444444443333

>1lfw_A PEPV; hydrolase, dipeptidase; HET: AEP; 1.80A {Bacteria} SCOP: c.56.5.4 d.58.19.1

Probab=99.25  E-value=4.4e-12  Score=110.71  Aligned_cols=147  Identities=11%  Similarity=0.051  Sum_probs=93.0

Q ss_pred             EEEEEEeeecCCcCCCCCCCCHHHHHHHHHHHHh------Hhh---cccCCCCCCCcc------CCCCCCceEeeeEEec
Q 029000            3 PWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQ------TRF---YKDFPPHPKEQV------YGFETPSTMKPTQWSY   67 (200)
Q Consensus         3 ~~~I~v~G~~gHas~P~~g~NAi~~aa~~l~~l~------~~~---~~~~~~~~~~~~------~~~~~~~t~~~g~i~~   67 (200)
                      +++|+++|+++|+|.|+.|+||+.++++++.+++      ++.   .+.+........      .......++++|.+  
T Consensus       258 ~~~i~v~G~~~Ha~~P~~g~nAi~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~t~~~g~i--  335 (470)
T 1lfw_A          258 SADIVLIGQGAHASAPQVGKNSATFLALFLDQYAFAGRDKNFLHFLAEVEHEDFYGKKLGIFHHDDLMGDLASSPSMF--  335 (470)
T ss_dssp             EEEEEEECBCCBTTCGGGSBCHHHHHHHHHTTSCBCHHHHHHHHHHHHTTTTCTTSTTTTCCCEETTTEECEEEEEEE--
T ss_pred             cEEEEEeecccCCCCCccCccHHHHHHHHHHhCCCcchhHHHHHHHHHhcCCCCcccccCCcccccccccceEEEEEE--
Confidence            7899999999999999999999999999998875      211   111110000000      00011234555554  


Q ss_pred             CCCccceeCCe-EEEEEEEeCCCCCCHHHHHHHHHHHHHHHhhcccccccccCcccccCCCccccccc----eeeecC--
Q 029000           68 PGGGINQIPGE-CTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGRH----VLSLHY--  140 (200)
Q Consensus        68 gg~~~NviP~~-a~~~~diR~~~~~~~e~i~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~~l~~~~----~~~~~~--  140 (200)
                           |.+|++ |++.+|+|+++.++.+++.++++++++. +.+++..  ...++..+++|+++...+    ...++.  
T Consensus       336 -----~~~p~~~a~~~~diR~~~~~~~~~i~~~i~~~~~~-g~~v~~~--~~~~~~~~~~d~~l~~~~~~a~~~~~g~~~  407 (470)
T 1lfw_A          336 -----DYEHAGKASLLNNVRYPQGTDPDTMIKQVLDKFSG-ILDVTYN--GFEEPHYVPGSDPMVQTLLKVYEKQTGKPG  407 (470)
T ss_dssp             -----EEETTSCEEEEEEEEECTTCCHHHHHHHHHHHHTT-TEEEECS--CCBCCEECCTTCHHHHHHHHHHHHHHCCCC
T ss_pred             -----EEcCCceEEEEEEEecCCCCCHHHHHHHHHHHhcC-CeEEEEE--eCCCceeeCCCCHHHHHHHHHHHHHcCCCC
Confidence                 457999 9999999999999999999999999876 4344321  112233455676643222    111111  


Q ss_pred             ---CCCccccccccccccccccccccc
Q 029000          141 ---LTLGRDDFRIFPLRWQRHKIKFGR  164 (200)
Q Consensus       141 ---~~~~~eDf~~~~~~~~~~~~~fG~  164 (200)
                         ...|+.|++++.     .++.|||
T Consensus       408 ~~~~~~g~~d~~~~~-----~~v~~G~  429 (470)
T 1lfw_A          408 HEVVIGGGTYGRLFE-----RGVAFGA  429 (470)
T ss_dssp             CEEEESSCCGGGGST-----TCEECCE
T ss_pred             ceeeecCHhHHHhCC-----CeEEECC
Confidence               123678888874     3577886

>2zog_A Cytosolic non-specific dipeptidase; metallopeptidase, protein-inhibitor complex, CNDP2, CNDP DIP 2, bestatin, L-carnosine, carnosinase, Zn; HET: BES; 1.70A {Mus musculus} PDB: 2zof_A*

Probab=99.24  E-value=2.6e-12  Score=112.45  Aligned_cols=104  Identities=15%  Similarity=0.094  Sum_probs=79.0

Q ss_pred             eEEEEEEeeec--CCcCCCCCCCCHHHHHHHHHHHHhHhhcccC----CCC------------------CCCc-----cC
Q 029000            2 IPWKLHVTGKL--FHSGLPHKAINPLELAMEALKVIQTRFYKDF----PPH------------------PKEQ-----VY   52 (200)
Q Consensus         2 ~~~~I~v~G~~--gHas~P~~g~NAi~~aa~~l~~l~~~~~~~~----~~~------------------~~~~-----~~   52 (200)
                      .+++|+++|++  +|||.|  |.||+..+++++..|+.+..+..    +..                  +..+     ..
T Consensus       218 ~~~~i~v~G~~~~~Hs~~~--g~~ai~~~~~~i~~l~~l~~~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  295 (479)
T 2zog_A          218 CYFFIEVECSDKDLHSGVY--GGSVHEAMTDLISLMGCLVDKKGKILIPGINDAVAPVTDEEHALYDHIDFDMEEFAKDV  295 (479)
T ss_dssp             EEEEEEEECCSSCEEHHHH--TTTSCCHHHHHHHHHTTSBCTTSCBCSTTTTTTSCCCCHHHHHHTSSCCCCHHHHHHHH
T ss_pred             EEEEEEEEeCCCCCccCCC--CCCccCHHHHHHHHHHhcCCCCCCEecCchhccCCCCCHHHHHHHHhCCCCHHHHHHhc
Confidence            57899999999  999986  88999999999999876421100    000                  0000     00


Q ss_pred             CC-----------C----CCceEeeeEEecCC----CccceeCCeEEEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Q 029000           53 GF-----------E----TPSTMKPTQWSYPG----GGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDIN  108 (200)
Q Consensus        53 ~~-----------~----~~~t~~~g~i~~gg----~~~NviP~~a~~~~diR~~~~~~~e~i~~~i~~~~~~~~  108 (200)
                      +.           .    ...+++++.|+ +|    ++.|+||++|++.+|+|+.++++.+++.+++++.+++.+
T Consensus       296 g~~~~~~~~~~~~~~~~~~~~~~~v~~i~-gg~~g~~~~NvIP~~a~~~~~~R~~~~~~~~~v~~~i~~~~~~~~  369 (479)
T 2zog_A          296 GAETLLHSCKKDILMHRWRYPSLSLHGIE-GAFSGSGAKTVIPRKVVGKFSIRLVPDMIPEVVSEQVSSYLSKKF  369 (479)
T ss_dssp             TCSSCSCSSHHHHHHHHHTSCEEEEEEEE-SSCCSSSCCCEECSEEEEEEEEEECTTCCHHHHHHHHHHHHHHHH
T ss_pred             CCccccccchHHHHHHhhcCCCeEEeeee-cCCcCCCCccccCCceEEEEEEEeCCCCCHHHHHHHHHHHHHHhh
Confidence            00           0    13678999999 66    799999999999999999999999999999999998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	200
d1lfwa2	196	d.58.19.1 (A:187-382) Aminopeptidase PepV {Lactoba	9e-12
d1vgya2	113	d.58.19.1 (A:181-293) Succinyl-diaminopimelate des	9e-11
d1cg2a2	113	d.58.19.1 (A:214-326) Carboxypeptidase G2 {Pseudom	9e-08
d1ysja2	115	d.58.19.1 (A:178-292) Protein YxeP {Bacillus subti	2e-06
d1xmba2	119	d.58.19.1 (A:216-334) IAA-amino acid hydrolase {Mo	7e-06
d1z2la2	117	d.58.19.1 (A:213-329) Allantoate amidohydrolase Al	3e-05

>d1lfwa2 d.58.19.1 (A:187-382) Aminopeptidase PepV {Lactobacillus delbrueckii [TaxId: 1584]} Length = 196

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Bacterial exopeptidase dimerisation domain
family: Bacterial exopeptidase dimerisation domain
domain: Aminopeptidase PepV
species: Lactobacillus delbrueckii [TaxId: 1584]

 Score = 59.1 bits (142), Expect = 9e-12
 Identities = 17/116 (14%), Positives = 34/116 (29%), Gaps = 11/116 (9%)

Query: 4   WKLHVTGKLFHSGLPHKAINPLELAMEALKVIQT-----RFYKDFPPHPKEQVYGFE--- 55
             + + G+  H+  P    N        L           F         E  YG +   
Sbjct: 73  ADIVLIGQGAHASAPQVGKNSATFLALFLDQYAFAGRDKNFLHFLAEVEHEDFYGKKLGI 132

Query: 56  --TPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINE 109
                 M     S P     +  G+ ++  +VR     +   ++K++ +    I +
Sbjct: 133 FHHDDLMGDLASS-PSMFDYEHAGKASLLNNVRYPQGTDPDTMIKQVLDKFSGILD 187

>d1vgya2 d.58.19.1 (A:181-293) Succinyl-diaminopimelate desuccinylase {Neisseria meningitidis [TaxId: 487]} Length = 113

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Bacterial exopeptidase dimerisation domain
family: Bacterial exopeptidase dimerisation domain
domain: Succinyl-diaminopimelate desuccinylase
species: Neisseria meningitidis [TaxId: 487]

 Score = 54.7 bits (131), Expect = 9e-11
 Identities = 24/109 (22%), Positives = 41/109 (37%), Gaps = 8/109 (7%)

Query: 4   WKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPT 63
             L V GK  H   PH AINP+     AL  +    +         +   +  P++ + +
Sbjct: 5   GNLTVKGKQGHIAYPHLAINPVHTFAPALLELTQEVWD--------EGNEYFPPTSFQIS 56

Query: 64  QWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIE 112
             +   G  N IPGE  V  + R +       + +R+   +D      +
Sbjct: 57  NINGGTGATNVIPGELNVKFNFRFSTESTEAGLKQRVHAILDKHGVQYD 105

>d1cg2a2 d.58.19.1 (A:214-326) Carboxypeptidase G2 {Pseudomonas sp., strain rs-16 [TaxId: 306]} Length = 113

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Bacterial exopeptidase dimerisation domain
family: Bacterial exopeptidase dimerisation domain
domain: Carboxypeptidase G2
species: Pseudomonas sp., strain rs-16 [TaxId: 306]

 Score = 46.7 bits (110), Expect = 9e-08
 Identities = 22/103 (21%), Positives = 36/103 (34%), Gaps = 15/103 (14%)

Query: 4   WKLHVTGKLFHSGL-PHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKP 62
            ++++TGK  H+G  P   +N L  A + +        K                +    
Sbjct: 6   VQVNITGKASHAGAAPELGVNALVEASDLVLRTMNIDDKA--------------KNLRFN 51

Query: 63  TQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVD 105
              +  G   N IP   T++ DVR     +    MK L+E   
Sbjct: 52  WTIAKAGNVSNIIPASATLNADVRYARNEDFDAAMKTLEERAQ 94

>d1ysja2 d.58.19.1 (A:178-292) Protein YxeP {Bacillus subtilis [TaxId: 1423]} Length = 115

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Bacterial exopeptidase dimerisation domain
family: Bacterial exopeptidase dimerisation domain
domain: Protein YxeP
species: Bacillus subtilis [TaxId: 1423]

 Score = 42.9 bits (100), Expect = 2e-06
 Identities = 17/104 (16%), Positives = 40/104 (38%), Gaps = 10/104 (9%)

Query: 4   WKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPT 63
           +++ + GK  H+ +P+ +I+P+  A + +  +Q+   ++                 +   
Sbjct: 5   FEIVIKGKGGHASIPNNSIDPIAAAGQIISGLQSVVSRNISSLQN----------AVVSI 54

Query: 64  QWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDI 107
                G   N IP +  + G VR         V + ++   + I
Sbjct: 55  TRVQAGTSWNVIPDQAEMEGTVRTFQKEARQAVPEHMRRVAEGI 98

>d1xmba2 d.58.19.1 (A:216-334) IAA-amino acid hydrolase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 119

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Bacterial exopeptidase dimerisation domain
family: Bacterial exopeptidase dimerisation domain
domain: IAA-amino acid hydrolase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 41.3 bits (96), Expect = 7e-06
 Identities = 22/104 (21%), Positives = 41/104 (39%), Gaps = 12/104 (11%)

Query: 4   WKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPT 63
           ++  +TGK  H+ +P   I+P+  A   +  +Q    ++  P            S +   
Sbjct: 6   FEAVITGKGGHAAIPQHTIDPVVAASSIVLSLQQLVSRETDP----------LDSKVVTV 55

Query: 64  QWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDI 107
                G   N IP   T+ G +R   F   T + +R++E +   
Sbjct: 56  SKVNGGNAFNVIPDSITIGGTLR--AFTGFTQLQQRVKEVITKQ 97

>d1z2la2 d.58.19.1 (A:213-329) Allantoate amidohydrolase AllC {Escherichia coli [TaxId: 562]} Length = 117

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Bacterial exopeptidase dimerisation domain
family: Bacterial exopeptidase dimerisation domain
domain: Allantoate amidohydrolase AllC
species: Escherichia coli [TaxId: 562]

 Score = 39.8 bits (92), Expect = 3e-05
 Identities = 16/106 (15%), Positives = 35/106 (33%), Gaps = 14/106 (13%)

Query: 4   WKLHVTGKLFHSGL--PHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMK 61
           + + + G+  H+G        + +            +  +   P           P+T+ 
Sbjct: 6   YTVTLNGESNHAGTTPMGYRRDTVYAFSRICHQSVEKAKRMGDPLVLTFGKVEPRPNTV- 64

Query: 62  PTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDI 107
                      N +PG+ T + D R T    + D  ++L+  +  I
Sbjct: 65  -----------NVVPGKTTFTIDCRHTDAAVLRDFTQQLENDMRAI 99

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	200
d1vgya2	113	Succinyl-diaminopimelate desuccinylase {Neisseria	99.85
d1ysja2	115	Protein YxeP {Bacillus subtilis [TaxId: 1423]}	99.84
d1xmba2	119	IAA-amino acid hydrolase {Mouse-ear cress (Arabido	99.82
d1cg2a2	113	Carboxypeptidase G2 {Pseudomonas sp., strain rs-16	99.76
d1r3na2	116	Peptidase-like beta-alanine synthase {Yeast (Sacch	99.71
d1z2la2	117	Allantoate amidohydrolase AllC {Escherichia coli [	99.69
d1lfwa2	196	Aminopeptidase PepV {Lactobacillus delbrueckii [Ta	99.58
d1fnoa3	113	Peptidase T (tripeptidase) {Salmonella typhimurium	96.79
d1ysja1	261	Protein YxeP {Bacillus subtilis [TaxId: 1423]}	94.33
d1xmba1	273	IAA-amino acid hydrolase, catalytic domain {Mouse-	91.27

>d1vgya2 d.58.19.1 (A:181-293) Succinyl-diaminopimelate desuccinylase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Bacterial exopeptidase dimerisation domain
family: Bacterial exopeptidase dimerisation domain
domain: Succinyl-diaminopimelate desuccinylase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.85  E-value=3.4e-21  Score=136.74  Aligned_cols=102  Identities=24%  Similarity=0.325  Sum_probs=86.2

Q ss_pred             eEEEEEEeeecCCcCCCCCCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCeEEE
Q 029000            2 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTV   81 (200)
Q Consensus         2 ~~~~I~v~G~~gHas~P~~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~a~~   81 (200)
                      ++++|+++||++|||+||.|+|||.++++++..+++...+...        ....+.++++|.++.|+...|+||++|++
T Consensus         3 l~~~i~i~Gk~gHaa~P~~g~NpI~~~~~~i~~l~~~~~~~~~--------~~~~~~~~~~t~i~~G~~~~NvIP~~a~~   74 (113)
T d1vgya2           3 LSGNLTVKGKQGHIAYPHLAINPVHTFAPALLELTQEVWDEGN--------EYFPPTSFQISNINGGTGATNVIPGELNV   74 (113)
T ss_dssp             EEEEEEEECBCEETTCGGGCBCHHHHHHHHHHHHHHCCCCCCC--------SSCCCCEEEEEEEEECCSCTTEECSEEEE
T ss_pred             eEEEEEEEEEeecccCcccCCCcHHHHHHHHHHHHhhhcccCc--------ccCCCcEEEEEEEEecccccccCCCceEE
Confidence            6899999999999999999999999999999999875322211        12456899999999333578999999999


Q ss_pred             EEEEeCCCCCCHHHHHHHHHHHHHHHhhcc
Q 029000           82 SGDVRLTPFYNVTDVMKRLQEYVDDINENI  111 (200)
Q Consensus        82 ~~diR~~~~~~~e~i~~~i~~~~~~~~~~v  111 (200)
                      .+|+|+.+.++.++++++|++++++.+.+.
T Consensus        75 ~~~iR~~~~~~~~~i~~~i~~i~~~~~~~~  104 (113)
T d1vgya2          75 KFNFRFSTESTEAGLKQRVHAILDKHGVQY  104 (113)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred             EEEEEeCCHHHHHHHHHHHHHHHHHcCCeE
Confidence            999999999999999999999998776553

>d1ysja2 d.58.19.1 (A:178-292) Protein YxeP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Bacterial exopeptidase dimerisation domain
family: Bacterial exopeptidase dimerisation domain
domain: Protein YxeP
species: Bacillus subtilis [TaxId: 1423]

Probab=99.84  E-value=3.1e-21  Score=137.30  Aligned_cols=98  Identities=18%  Similarity=0.308  Sum_probs=74.1

Q ss_pred             EEEEEEeeecCCcCCCCCCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCeEEEE
Q 029000            3 PWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVS   82 (200)
Q Consensus         3 ~~~I~v~G~~gHas~P~~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~a~~~   82 (200)
                      +|+|+++|+++|+|+|+.|+||+.++++++.+|+++..+...+         ..+.++++|.++ +|.+.|+||++|++.
T Consensus         4 ~f~v~v~Gk~aHaa~P~~g~nai~~a~~~i~~l~~~~~~~~~~---------~~~~~~~~~~i~-~G~~~NvIP~~~~~~   73 (115)
T d1ysja2           4 RFEIVIKGKGGHASIPNNSIDPIAAAGQIISGLQSVVSRNISS---------LQNAVVSITRVQ-AGTSWNVIPDQAEME   73 (115)
T ss_dssp             EEEEEEECC--------CCCCHHHHHHHHHHHHC--------------------CCEEEEEEEE-ECSCSSSCCSEEEEE
T ss_pred             EEEEEEEEecccccCcccCcCHHHHHHHHHHHhcccchhcccc---------cccccceeeEEe-cCccccccCcceEEE
Confidence            5899999999999999999999999999999998764332221         234789999999 888999999999999


Q ss_pred             EEEeCCCCCCHHHHHHHHHHHHHHHhhc
Q 029000           83 GDVRLTPFYNVTDVMKRLQEYVDDINEN  110 (200)
Q Consensus        83 ~diR~~~~~~~e~i~~~i~~~~~~~~~~  110 (200)
                      +|+|+.+.++.+++.++|+++++..+..
T Consensus        74 ~~iR~~~~~~~~~i~~~i~~~~~~~a~~  101 (115)
T d1ysja2          74 GTVRTFQKEARQAVPEHMRRVAEGIAAG  101 (115)
T ss_dssp             EEEECSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEeccCCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999987654

>d1xmba2 d.58.19.1 (A:216-334) IAA-amino acid hydrolase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Bacterial exopeptidase dimerisation domain
family: Bacterial exopeptidase dimerisation domain
domain: IAA-amino acid hydrolase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.82  E-value=1.1e-20  Score=135.22  Aligned_cols=97  Identities=21%  Similarity=0.327  Sum_probs=55.0

Q ss_pred             eEEEEEEeeecCCcCCCCCCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCeEEE
Q 029000            2 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTV   81 (200)
Q Consensus         2 ~~~~I~v~G~~gHas~P~~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~a~~   81 (200)
                      .+|+|+++||++|+|+|+.|+||+.++++++.+|+++..+...+         ..+.++++|.++ +|++.|+||++|++
T Consensus         4 ~~f~I~v~Gk~~Has~P~~g~nai~~~~~~i~~l~~~~~~~~~~---------~~~~~~~~g~i~-gG~a~NvIP~~a~~   73 (119)
T d1xmba2           4 GVFEAVITGKGGHAAIPQHTIDPVVAASSIVLSLQQLVSRETDP---------LDSKVVTVSKVN-GGNAFNVIPDSITI   73 (119)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTTCBCCSSG---------GGCEEEEEEEEC---------CCEEEE
T ss_pred             eEEEEEEEeecccccCcccCCCHHHHHHHHHHhhhhccccccCc---------ccccceeEEEcc-cCccceecCCeEEE
Confidence            47899999999999999999999999999999998753322211         234788999999 89999999999999


Q ss_pred             EEEEeCCCCCCHHHHHHHHHHHHHHHhhc
Q 029000           82 SGDVRLTPFYNVTDVMKRLQEYVDDINEN  110 (200)
Q Consensus        82 ~~diR~~~~~~~e~i~~~i~~~~~~~~~~  110 (200)
                      ++|+|+.+.+  +++.++|++++++.+..
T Consensus        74 ~~~iR~~~~~--~~i~~~i~~~~~~~a~~  100 (119)
T d1xmba2          74 GGTLRAFTGF--TQLQQRVKEVITKQAAV  100 (119)
T ss_dssp             EEEEEESSCH--HHHHHHHHHHHHHHHHH
T ss_pred             EEEEecCChH--HHHHHHHHHHHHHHHHH
Confidence            9999988654  46888888888776544

>d1cg2a2 d.58.19.1 (A:214-326) Carboxypeptidase G2 {Pseudomonas sp., strain rs-16 [TaxId: 306]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Bacterial exopeptidase dimerisation domain
family: Bacterial exopeptidase dimerisation domain
domain: Carboxypeptidase G2
species: Pseudomonas sp., strain rs-16 [TaxId: 306]

Probab=99.76  E-value=8e-19  Score=124.04  Aligned_cols=92  Identities=23%  Similarity=0.223  Sum_probs=81.6

Q ss_pred             eEEEEEEeeecCCc-CCCCCCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCeEE
Q 029000            2 IPWKLHVTGKLFHS-GLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECT   80 (200)
Q Consensus         2 ~~~~I~v~G~~gHa-s~P~~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~a~   80 (200)
                      ++++|+++|+++|| +.|+.|+||+..+++++.+++++ ...            ....+++++.++ +|...|+||++|+
T Consensus         4 ~~~~v~~~Gk~~Hag~~P~~g~nAi~~a~~~i~~l~~~-~~~------------~~~~~~~~~~~~-gG~~~NvIP~~~~   69 (113)
T d1cg2a2           4 AYVQVNITGKASHAGAAPELGVNALVEASDLVLRTMNI-DDK------------AKNLRFNWTIAK-AGNVSNIIPASAT   69 (113)
T ss_dssp             EEEEEEEECBCEETTSCGGGSBCHHHHHHHHHHHHGGG-CBT------------TTTEEEEEEEEE-ECSSTTEECSEEE
T ss_pred             EEEEEEEEeECccccCCccccCcchHHHHHHHHHHHhh-hcc------------CCCcEEEEEEee-ccccCcEeCCEEE
Confidence            68999999999996 78999999999999999999874 221            234788999999 9999999999999


Q ss_pred             EEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 029000           81 VSGDVRLTPFYNVTDVMKRLQEYVDDI  107 (200)
Q Consensus        81 ~~~diR~~~~~~~e~i~~~i~~~~~~~  107 (200)
                      +++|+|+.+.++.+++.++|++++++.
T Consensus        70 ~~~diR~~~~e~~~~v~~~i~~~~~~~   96 (113)
T d1cg2a2          70 LNADVRYARNEDFDAAMKTLEERAQQK   96 (113)
T ss_dssp             EEEEEEESSHHHHHHHHHHHHHHHTSC
T ss_pred             EEEEEecCCHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999987653

>d1r3na2 d.58.19.1 (A:248-363) Peptidase-like beta-alanine synthase {Yeast (Saccharomyces kluyveri) [TaxId: 4934]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Bacterial exopeptidase dimerisation domain
family: Bacterial exopeptidase dimerisation domain
domain: Peptidase-like beta-alanine synthase
species: Yeast (Saccharomyces kluyveri) [TaxId: 4934]

Probab=99.71  E-value=1.6e-17  Score=117.84  Aligned_cols=93  Identities=16%  Similarity=0.111  Sum_probs=79.7

Q ss_pred             EEEEEEeeecCCc-CCC-CCCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCeEE
Q 029000            3 PWKLHVTGKLFHS-GLP-HKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECT   80 (200)
Q Consensus         3 ~~~I~v~G~~gHa-s~P-~~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~a~   80 (200)
                      ||+|+++|+++|| ++| +.+.||+.+++.++..+++.. ..             .+.+.++|.+..+++..|+||++|+
T Consensus         4 W~~v~v~G~~aHAGs~P~~~~~da~~aa~~~i~~l~~~~-~~-------------~~~~~tv~~~~~g~~~~NvIP~~a~   69 (116)
T d1r3na2           4 WQKVTVHGVGAHAGTTPWRLRKDALLMSSKMIVAASEIA-QR-------------HNGLFTCGIIDAKPYSVNIIPGEVS   69 (116)
T ss_dssp             EEEEEEECCCEETTTSCGGGCCCHHHHHHHHHHHHHHHH-HH-------------TTCEEECCCEEEESCCTTEECSEEE
T ss_pred             EEEEEEEEECcccCCCcccccchHHHHHHHHHhhccccc-cc-------------CCceEEEEEEEecCcccceeCCEEE
Confidence            7899999999996 789 678999999999999998752 21             1245677888867788999999999


Q ss_pred             EEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 029000           81 VSGDVRLTPFYNVTDVMKRLQEYVDDINE  109 (200)
Q Consensus        81 ~~~diR~~~~~~~e~i~~~i~~~~~~~~~  109 (200)
                      +.+|+|.++.+..+++.++|++.+++.+.
T Consensus        70 ~~~d~R~~~~~~~~~i~~~i~~~~~~~a~   98 (116)
T d1r3na2          70 FTLDFRHPSDDVLATMLKEAAAEFDRLIK   98 (116)
T ss_dssp             EEEEEEESCHHHHHHHHHHHHHHHHHHTT
T ss_pred             EEEEEecCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999987643

>d1z2la2 d.58.19.1 (A:213-329) Allantoate amidohydrolase AllC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Bacterial exopeptidase dimerisation domain
family: Bacterial exopeptidase dimerisation domain
domain: Allantoate amidohydrolase AllC
species: Escherichia coli [TaxId: 562]

Probab=99.69  E-value=2.8e-17  Score=116.67  Aligned_cols=97  Identities=14%  Similarity=0.143  Sum_probs=80.1

Q ss_pred             eEEEEEEeeecCCc-CCC-CCCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCeE
Q 029000            2 IPWKLHVTGKLFHS-GLP-HKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGEC   79 (200)
Q Consensus         2 ~~~~I~v~G~~gHa-s~P-~~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~a   79 (200)
                      .|++|+++|+++|| +.| +.+.||+.++++++..+++...+. .           .+.+..++.+..+|+..|+||++|
T Consensus         4 ~~~~v~~~G~~aHAGs~P~~~~~~al~aaa~~~~~l~~~~~~~-~-----------~~~~~~~~~~~~g~~~~NvIP~~a   71 (117)
T d1z2la2           4 RRYTVTLNGESNHAGTTPMGYRRDTVYAFSRICHQSVEKAKRM-G-----------DPLVLTFGKVEPRPNTVNVVPGKT   71 (117)
T ss_dssp             EEEEEEEECCCEETTTSCGGGCCCHHHHHHHHHHHHHHHHHHH-C-----------TTCEEECCCEEEESCCTTEECCEE
T ss_pred             eEEEEEEEEECCCCCCCcccccccHHHHHHHHHHHHHHHHHhc-c-----------CCccceEEEEEecCCccceeCCeE
Confidence            58999999999997 789 578999999999999998753332 1           123444444444888999999999


Q ss_pred             EEEEEEeCCCCCCHHHHHHHHHHHHHHHhhc
Q 029000           80 TVSGDVRLTPFYNVTDVMKRLQEYVDDINEN  110 (200)
Q Consensus        80 ~~~~diR~~~~~~~e~i~~~i~~~~~~~~~~  110 (200)
                      ++.+|+|+.+.+..+++.+++++.+++.+.+
T Consensus        72 ~~~~diR~~~~~~~~~i~~~i~~~~~~~a~~  102 (117)
T d1z2la2          72 TFTIDCRHTDAAVLRDFTQQLENDMRAICDE  102 (117)
T ss_dssp             EEEEEEEESSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEecCCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999887654

>d1lfwa2 d.58.19.1 (A:187-382) Aminopeptidase PepV {Lactobacillus delbrueckii [TaxId: 1584]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Bacterial exopeptidase dimerisation domain
family: Bacterial exopeptidase dimerisation domain
domain: Aminopeptidase PepV
species: Lactobacillus delbrueckii [TaxId: 1584]

Probab=99.58  E-value=1.2e-15  Score=117.41  Aligned_cols=103  Identities=13%  Similarity=0.065  Sum_probs=75.3

Q ss_pred             EEEEEEeeecCCcCCCCCCCCHHHHHHHHHHHHhHh---------hcccCCCCCCCccCCC-CCCceEeeeEEecCCCcc
Q 029000            3 PWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTR---------FYKDFPPHPKEQVYGF-ETPSTMKPTQWSYPGGGI   72 (200)
Q Consensus         3 ~~~I~v~G~~gHas~P~~g~NAi~~aa~~l~~l~~~---------~~~~~~~~~~~~~~~~-~~~~t~~~g~i~~gg~~~   72 (200)
                      +++|+++|+++|||+|+.|+|||..++++|.+|+..         ....+.........+. ....+...+.++ +|...
T Consensus        72 ~~~i~~~Gk~aHss~P~~G~NAi~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~t~~-~G~~~  150 (196)
T d1lfwa2          72 SADIVLIGQGAHASAPQVGKNSATFLALFLDQYAFAGRDKNFLHFLAEVEHEDFYGKKLGIFHHDDLMGDLASS-PSMFD  150 (196)
T ss_dssp             EEEEEEECBCCBTTCGGGSBCHHHHHHHHHTTSCBCHHHHHHHHHHHHTTTTCTTSTTTTCCCEETTTEECEEE-EEEEE
T ss_pred             eEEEEEEEEECCccCcccCcCHHHHHHHHHHHhhhccchhhhhhhhhhhhcccccccccCCcccCceecCeEEe-eeeEe
Confidence            578999999999999999999999999999987521         0111110000001110 011234566777 77888


Q ss_pred             ceeCCeEEEEEEEeCCCCCCHHHHHHHHHHHHHH
Q 029000           73 NQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDD  106 (200)
Q Consensus        73 NviP~~a~~~~diR~~~~~~~e~i~~~i~~~~~~  106 (200)
                      |++|++|++.+|+|++++.+.+++.++|++.+.+
T Consensus       151 n~~p~~~~~~~diR~p~~~~~e~i~~~i~~~~~~  184 (196)
T d1lfwa2         151 YEHAGKASLLNNVRYPQGTDPDTMIKQVLDKFSG  184 (196)
T ss_dssp             EETTSCEEEEEEEEECTTCCHHHHHHHHHHHHTT
T ss_pred             eccCCeEEEEEEEccCCCCCHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999887754

>d1fnoa3 d.58.19.1 (A:208-320) Peptidase T (tripeptidase) {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Bacterial exopeptidase dimerisation domain
family: Bacterial exopeptidase dimerisation domain
domain: Peptidase T (tripeptidase)
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.79  E-value=0.0038  Score=42.12  Aligned_cols=92  Identities=12%  Similarity=0.133  Sum_probs=61.7

Q ss_pred             eEEEEEEeeecCCcCCC-CCCCCHHHHHHHHHHHHhHhhcccCCCCCCCccCCCCCCceEeeeEEecCCCccceeCCeEE
Q 029000            2 IPWKLHVTGKLFHSGLP-HKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECT   80 (200)
Q Consensus         2 ~~~~I~v~G~~gHas~P-~~g~NAi~~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~NviP~~a~   80 (200)
                      ...+|+++|++.|-+.. ..=+||+..+++++..|...   +.|...    .+  -..-+-+..++ |+      -++++
T Consensus         4 a~a~i~i~G~svHPG~AKgkMvNA~~~A~ef~~~LP~~---e~PE~T----eg--~EGF~hl~~~~-G~------ve~a~   67 (113)
T d1fnoa3           4 ASVNIKIVGNNVHPGTAKGVMVNALSLAARIHAEVPAD---EAPETT----EG--YEGFYHLASMK-GT------VDRAE   67 (113)
T ss_dssp             EEEEEEEECBCCCGGGCTTTCBCHHHHHHHHHHTSCTT---SSGGGC----CT--TCCEEEEEEEE-EC------SSEEE
T ss_pred             ceEEEEEEEEEeCCcchhhHHHhHHHHHHHHHHhCCCC---CCCCcc----CC--ccceEEEeeee-ec------hHHEE
Confidence            45789999999997643 33489999999999887642   112110    01  11223455556 32      37899


Q ss_pred             EEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 029000           81 VSGDVRLTPFYNVTDVMKRLQEYVDDINE  109 (200)
Q Consensus        81 ~~~diR~~~~~~~e~i~~~i~~~~~~~~~  109 (200)
                      +.+-+|-.+.+..++=.+.++++++....
T Consensus        68 l~yIIRDfd~~~f~~rk~~l~~~~~~~n~   96 (113)
T d1fnoa3          68 MHYIIRDFDRKQFEARKRKMMEIAKKVGK   96 (113)
T ss_dssp             EEEEEEESSHHHHHHHHHHHHHHHHHHTT
T ss_pred             EEEEEeeCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999887777777777777766533

>d1ysja1 c.56.5.4 (A:4-177,A:293-379) Protein YxeP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: Bacterial dinuclear zinc exopeptidases
domain: Protein YxeP
species: Bacillus subtilis [TaxId: 1423]

Probab=94.33  E-value=0.0063  Score=47.12  Aligned_cols=31  Identities=10%  Similarity=0.189  Sum_probs=26.3

Q ss_pred             eecCCCCccccccccccccccccccccceeEEEEeeHHHH
Q 029000          137 SLHYLTLGRDDFRIFPLRWQRHKIKFGRLKCIFYLSIYKF  176 (200)
Q Consensus       137 ~~~~~~~~~eDf~~~~~~~~~~~~~fG~~~~~~~~~~~~~  176 (200)
                      +..++.+++|||++|.++++         +||+|+|..|.
T Consensus       198 v~~~~~~g~EDFs~~~~~vP---------g~f~~lG~g~~  228 (261)
T d1ysja1         198 VHAEQSPGGEDFALYQEKIP---------GFFVWMGTNGT  228 (261)
T ss_dssp             EECCCBSSCCTHHHHHTTSC---------EEEEEEECCCS
T ss_pred             eeccccccccCHHHHHHhCC---------ceEEEEeCCCC
Confidence            34457899999999999997         89999998764

>d1xmba1 c.56.5.4 (A:37-215,A:335-428) IAA-amino acid hydrolase, catalytic domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: Bacterial dinuclear zinc exopeptidases
domain: IAA-amino acid hydrolase, catalytic domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.27  E-value=0.029  Score=43.44  Aligned_cols=30  Identities=17%  Similarity=0.195  Sum_probs=25.1

Q ss_pred             eecCCCCccccccccccccccccccccceeEEEEeeHHH
Q 029000          137 SLHYLTLGRDDFRIFPLRWQRHKIKFGRLKCIFYLSIYK  175 (200)
Q Consensus       137 ~~~~~~~~~eDf~~~~~~~~~~~~~fG~~~~~~~~~~~~  175 (200)
                      ....+.+|+|||++|.+.++         +||+|+|..+
T Consensus       204 ~~~~P~mgsEDFs~~~~~vP---------g~~~~lG~~~  233 (273)
T d1xmba1         204 VEAAPVMGSEDFSYFAETIP---------GHFSLLGMQD  233 (273)
T ss_dssp             EECCCBCCCCTHHHHHTTSC---------EEEEEEEEEC
T ss_pred             cccCchhhHHHHHHHHHhCC---------ceEEEEcccc
Confidence            33457899999999999886         8999999875