Citrus Sinensis ID: 029017

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200
Protein Sequence
MYPQGEKAETSWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGTAAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQFCSTAFGYYAQATAAQEIFGHTLESLRGIKYLYKYNVFQIAFVVLAGLTFVYYAAFGWRRRKPSGKFQLSS
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEcHHHHHHHHHHHHHHHHHHHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEccc
Coil and Loop (DISEMBL)
mypqgekaetsWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLinpplhpflnEVFIKLDDLWGLLGTAAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQFCSTAFGYYAQATAAQEIFGHTLESLRGIKYLYKYNVFQIAFVVLAGLTFVYYaafgwrrrkpsgkfqlss
Flexible Loop (DISEMBL)
mypqgekaetsWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGTAAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQFCSTAFGYYAQATAAQEIFGHTLESLRGIKYLYKYNVFQIAFVVLAGLTFVYYAafgwrrrkpsgkfqlss
Low Complexity Region (SEG)
MYPQGEKAETSWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGTaafaffcfylllaVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQFCSTAFGYYAQATAAQEIFGHTLESLRGIKYLYKYNVFQIAFVVLAGLTFVYYAAFGWRRRKPSGKFQLSS
Disordered region (IsUnstruct)
**********SWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGTAAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQFCSTAFGYYAQATAAQEIFGHTLESLRGIKYLYKYNVFQIAFVVLAGLTFVYYAAFGWR************
Disordered Region (DISOPRED)
*******AETSWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGTAAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQFCSTAFGYYAQATAAQEIFGHTLESLRGIKYLYKYNVFQIAFVVLAGLTFVYYAAF***************
Disordered Region (DISEMBL)
********ETSWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGTAAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQFCSTAFGYYAQATAAQEIFGHTLESLRGIKYLYKYNVFQIAFVVLAGLTFVYYAAFGWRRR**********
Disordered Region (DISPRO)
*YPQGEKAETSWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGTAAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQFCSTAFGYYAQATAAQEIFGHTLESLRGIKYLYKYNVFQIAFVVLAGLTFVYYAAFGWRRR**********
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MYPQGEKAETSWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGTAAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQFCSTAFGYYAQATAAQEIFGHTLESLRGIKYLYKYNVFQIAFVVLAGLTFVYYAAFGWRRRKPSGKFQLSS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	200	2.2.26 [Sep-21-2011]
Q9M028	509	LIMR family protein At5g0	yes	no	1.0	0.392	0.9	1e-104
Q9SR93	509	LIMR family protein At3g0	yes	no	1.0	0.392	0.885	1e-103
Q658I5	510	LIMR family protein Os06g	yes	no	1.0	0.392	0.815	8e-87
D8RQM9	185	CASP-like protein SELMODR	N/A	no	0.575	0.621	0.626	2e-40
D8S069	187	CASP-like protein SELMODR	N/A	no	0.475	0.508	0.611	4e-31
D8TFA8	410	LIMR family protein SELMO	N/A	no	0.515	0.251	0.574	1e-30
D8S072	166	CASP-like protein SELMODR	N/A	no	0.475	0.572	0.601	2e-30
D8TFB0	321	LIMR family protein SELMO	N/A	no	0.495	0.308	0.575	3e-29
Q54QP7	507	LIMR family protein DDB_G	yes	no	0.775	0.305	0.418	8e-29
Q54BI3	507	LIMR family protein DDB_G	no	no	0.77	0.303	0.410	9e-29

>sp|Q9M028|LMBD2_ARATH LIMR family protein At5g01460 OS=Arabidopsis thaliana GN=At5g01460 PE=2 SV=1

 Score =  377 bits (968), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 180/200 (90%), Positives = 194/200 (97%)

Query: 1   MYPQGEKAETSWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIK 60
           MYPQGE+AET+WA TVLGYLAK VLGILG IVSVAW+AHI+IYLL++PPL PFLNEVFIK
Sbjct: 310 MYPQGEQAETAWAFTVLGYLAKFVLGILGLIVSVAWIAHIIIYLLVDPPLSPFLNEVFIK 369

Query: 61  LDDLWGLLGTAAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLI 120
           LDD+WGLLGTAAFAFFCFYLLLAVIAGAMMLGL+LVFITIHPMKWGATLMNSFLFNVGLI
Sbjct: 370 LDDVWGLLGTAAFAFFCFYLLLAVIAGAMMLGLKLVFITIHPMKWGATLMNSFLFNVGLI 429

Query: 121 LLCSISVIQFCSTAFGYYAQATAAQEIFGHTLESLRGIKYLYKYNVFQIAFVVLAGLTFV 180
           LLCSISVIQFC+TAFGYYAQATAAQEIFGHTL+SLRGIKYLYKYNVFQI FVVLAGLTF+
Sbjct: 430 LLCSISVIQFCATAFGYYAQATAAQEIFGHTLQSLRGIKYLYKYNVFQIGFVVLAGLTFL 489

Query: 181 YYAAFGWRRRKPSGKFQLSS 200
           YY AFGWRR+KPSG+FQLS+
Sbjct: 490 YYIAFGWRRKKPSGRFQLST 509

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SR93|LMBD1_ARATH LIMR family protein At3g08930 OS=Arabidopsis thaliana GN=At3g08930 PE=2 SV=2

 Score =  372 bits (955), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 177/200 (88%), Positives = 193/200 (96%)

Query: 1   MYPQGEKAETSWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIK 60
           MYPQGE+AET+WA TVLGYLAK +LGI+G IVS+AWVAHI+IYLL++PPL PFLNEVFIK
Sbjct: 310 MYPQGEQAETAWAFTVLGYLAKFILGIVGLIVSIAWVAHIIIYLLVDPPLSPFLNEVFIK 369

Query: 61  LDDLWGLLGTAAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLI 120
           LDD+WGLLGTAAFAFFCFYLLLAVIAGAMMLGL+LVFITIHPMKWGATLMNSFLFNVGLI
Sbjct: 370 LDDVWGLLGTAAFAFFCFYLLLAVIAGAMMLGLKLVFITIHPMKWGATLMNSFLFNVGLI 429

Query: 121 LLCSISVIQFCSTAFGYYAQATAAQEIFGHTLESLRGIKYLYKYNVFQIAFVVLAGLTFV 180
           LLCSISVIQFC+TAFGYYAQATAAQEIFGHTL+SLRGIKYLYKYNVFQI FV+LAGLTF+
Sbjct: 430 LLCSISVIQFCATAFGYYAQATAAQEIFGHTLQSLRGIKYLYKYNVFQIGFVILAGLTFL 489

Query: 181 YYAAFGWRRRKPSGKFQLSS 200
           YY AFGWRR+K SG+FQLSS
Sbjct: 490 YYIAFGWRRKKTSGRFQLSS 509

Arabidopsis thaliana (taxid: 3702)

>sp|Q658I5|LMBD1_ORYSJ LIMR family protein Os06g0128200 OS=Oryza sativa subsp. japonica GN=Os06g0128200 PE=2 SV=1

 Score =  319 bits (817), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 163/200 (81%), Positives = 182/200 (91%)

Query: 1   MYPQGEKAETSWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIK 60
           MYPQGE+AE +WALTVLGY+ KL+ G +G I+S+AWVAHIVIYLLI+PPL  FLNE+F+K
Sbjct: 311 MYPQGEQAEATWALTVLGYIGKLLFGAVGLIISIAWVAHIVIYLLIDPPLSSFLNEIFVK 370

Query: 61  LDDLWGLLGTAAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLI 120
           LD +WGLLGTAAFAFFCFYLL+AVIAG MMLGL+LVFITIHPMKWG TLMNSFLFNVGLI
Sbjct: 371 LDGVWGLLGTAAFAFFCFYLLIAVIAGEMMLGLKLVFITIHPMKWGGTLMNSFLFNVGLI 430

Query: 121 LLCSISVIQFCSTAFGYYAQATAAQEIFGHTLESLRGIKYLYKYNVFQIAFVVLAGLTFV 180
           LLCSISVIQFC+TAF YYAQATAAQEIFGHTL+SLRGIKYLYKYNVFQ  FV LA LT  
Sbjct: 431 LLCSISVIQFCATAFAYYAQATAAQEIFGHTLQSLRGIKYLYKYNVFQYGFVALAILTLF 490

Query: 181 YYAAFGWRRRKPSGKFQLSS 200
           YYA FGWR+RKP+G+FQLS+
Sbjct: 491 YYAIFGWRKRKPTGRFQLSN 510

Oryza sativa subsp. japonica (taxid: 39947)

>sp|D8RQM9|CSPLJ_SELML CASP-like protein SELMODRAFT_413556 OS=Selaginella moellendorffii GN=SELMODRAFT_413556 PE=3 SV=1

 Score =  165 bits (418), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 77/123 (62%), Positives = 98/123 (79%), Gaps = 8/123 (6%)

Query: 2   YPQGEKAETSWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKL 61
           +PQGEKA+TSWA+TVL YLAKLV GILG  +S+ W+ HI++++L+NPP  PFLN+VFI+L
Sbjct: 69  FPQGEKADTSWAVTVLFYLAKLVFGILGLALSIIWLLHIIVFMLVNPPAFPFLNQVFIQL 128

Query: 62  DDLWGLLGTAAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLIL 121
           D  WGLLGT AFA FC+YL+++VI+G M         +IHPMK+  TLMNSFLFNV +IL
Sbjct: 129 DSAWGLLGTTAFAIFCYYLIMSVISGEMH--------SIHPMKYQGTLMNSFLFNVAIIL 180

Query: 122 LCS 124
           LCS
Sbjct: 181 LCS 183

Selaginella moellendorffii (taxid: 88036)

>sp|D8S069|CSPLI_SELML CASP-like protein SELMODRAFT_416718 OS=Selaginella moellendorffii GN=SELMODRAFT_416718 PE=3 SV=1

 Score =  134 bits (337), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 63/103 (61%), Positives = 81/103 (78%), Gaps = 8/103 (7%)

Query: 2   YPQGEKAETSWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKL 61
           +PQGEKA+TSWALTVL YLAKLV GILG  +SV W+ HI++++L+NPP  PFLN+VFI+L
Sbjct: 93  FPQGEKADTSWALTVLFYLAKLVFGILGLALSVIWLLHIIVFMLVNPPAFPFLNQVFIQL 152

Query: 62  DDLWGLLGTAAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMK 104
           D  WGLLGT AFA FC+YL+++VI+G M         +I+PMK
Sbjct: 153 DSAWGLLGTTAFAIFCYYLVMSVISGEMH--------SIYPMK 187

Selaginella moellendorffii (taxid: 88036)

>sp|D8TFA8|LMBD3_SELML LIMR family protein SELMODRAFT_432208 OS=Selaginella moellendorffii GN=SELMODRAFT_432208 PE=3 SV=2

 Score =  132 bits (333), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 62/108 (57%), Positives = 85/108 (78%), Gaps = 5/108 (4%)

Query: 2   YPQGEKAETSWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKL 61
           +PQGEK      LTVL YLAKLV GI+G  +S+ W+ HI++++L+NPP  PFLN+VFI+L
Sbjct: 272 FPQGEKT-----LTVLFYLAKLVFGIVGLALSIIWLLHIIVFMLVNPPAFPFLNQVFIQL 326

Query: 62  DDLWGLLGTAAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATL 109
           D + GLLGT  FA FC+YL+++VI+G M LG+RL+F++IHPMK+  TL
Sbjct: 327 DTVGGLLGTTTFAIFCYYLVMSVISGKMHLGMRLLFLSIHPMKYQGTL 374

Selaginella moellendorffii (taxid: 88036)

>sp|D8S072|CSPLK_SELML CASP-like protein SELMODRAFT_416721 OS=Selaginella moellendorffii GN=SELMODRAFT_416721 PE=3 SV=1

 Score =  132 bits (332), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 62/103 (60%), Positives = 79/103 (76%), Gaps = 8/103 (7%)

Query: 2   YPQGEKAETSWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKL 61
           +PQGEKA+TSWA+TVL  LAKLV GILG  +SV W  HI++++L+NPP  PFLN+VFI+L
Sbjct: 72  FPQGEKADTSWAVTVLFSLAKLVFGILGLALSVIWPLHIIVFMLVNPPAFPFLNQVFIQL 131

Query: 62  DDLWGLLGTAAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMK 104
           D  WGLLGT AFA FC+YL+++VI+G M         +IHPMK
Sbjct: 132 DSAWGLLGTTAFAIFCYYLVMSVISGEMH--------SIHPMK 166

Selaginella moellendorffii (taxid: 88036)

>sp|D8TFB0|LMBD1_SELML LIMR family protein SELMODRAFT_432210 OS=Selaginella moellendorffii GN=SELMODRAFT_432210 PE=3 SV=1

 Score =  128 bits (321), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 57/99 (57%), Positives = 80/99 (80%)

Query: 6   EKAETSWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLW 65
           ++ +TSWALTVL YLAKLV GILG  +S+ W+ HI++++L+NPP  PFLN+VFI+LD   
Sbjct: 223 QQEDTSWALTVLFYLAKLVFGILGLALSIIWLLHILVFMLVNPPAFPFLNQVFIQLDSAG 282

Query: 66  GLLGTAAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMK 104
            LLGT  FA FC+Y +++VI+G M LG++L+F++IHPMK
Sbjct: 283 DLLGTTPFAIFCYYFVMSVISGEMHLGMKLLFLSIHPMK 321

Selaginella moellendorffii (taxid: 88036)

>sp|Q54QP7|Y3707_DICDI LIMR family protein DDB_G0283707 OS=Dictyostelium discoideum GN=DDB_G0283707 PE=3 SV=2

 Score =  126 bits (317), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 67/160 (41%), Positives = 99/160 (61%), Gaps = 5/160 (3%)

Query: 16  VLGYLAKLVLGILGFIVSVAWVAHIVIYLLINP-PLHPFLNEVFIKLDDLWGLLGTAAFA 74
           V+ Y A+   G +   VS+ W+ HI+IY++  P P HPFLN + I L++ WG LG   + 
Sbjct: 328 VIFYYAQFFGGFVALGVSLGWLLHIIIYMITAPEPFHPFLNSLVIALNNAWGFLGVIVYG 387

Query: 75  FFCFYLLLAVIAGAMMLGLRLVFI-TIHPMKWGATLMNSFLFNVGLILLCSISVIQFCST 133
              FYLL  V+ G    GLRL F+  IHPM+ G T+MN+FLFNVGLIL+ S+S+  FC+ 
Sbjct: 388 LLSFYLLFCVVKGNFKFGLRLFFLFPIHPMRVGNTMMNAFLFNVGLILITSVSITHFCTM 447

Query: 134 AFGYYAQATAAQEIFGHTLESLRGIKY---LYKYNVFQIA 170
           AF  +   TA   +F   +++L+ +K+   +Y + VF +A
Sbjct: 448 AFSQFTSTTAINSLFETAVKNLKILKWFWVVYIFGVFVMA 487

Dictyostelium discoideum (taxid: 44689)

>sp|Q54BI3|Y3610_DICDI LIMR family protein DDB_G0293610 OS=Dictyostelium discoideum GN=DDB_G0293610 PE=3 SV=1

 Score =  126 bits (317), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 64/156 (41%), Positives = 96/156 (61%), Gaps = 2/156 (1%)

Query: 16  VLGYLAKLVLGILGFIVSVAWVAHIVIYLLINP-PLHPFLNEVFIKLDDLWGLLGTAAFA 74
           V+ Y A+   G +   VS+ W+ HI+IY++  P P HPFLN + I L++ WG LG   + 
Sbjct: 328 VILYYAQFFGGFIALGVSLGWLLHIIIYMITAPEPFHPFLNSLVISLNNAWGFLGVIVYG 387

Query: 75  FFCFYLLLAVIAGAMMLGLRLVFI-TIHPMKWGATLMNSFLFNVGLILLCSISVIQFCST 133
              FYLL  V+ G    GLRL F+  IHPM+ G T+MN+FLFNVGLIL+ S+S+  FC+ 
Sbjct: 388 LLSFYLLFCVVKGNFKFGLRLFFLFPIHPMRVGNTMMNAFLFNVGLILITSVSITHFCTM 447

Query: 134 AFGYYAQATAAQEIFGHTLESLRGIKYLYKYNVFQI 169
           AF  +   T+   +F   +++L+ +K+ +   +F I
Sbjct: 448 AFSQFTSTTSINSLFETAVKNLKILKWFWVVYIFAI 483

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	200
225440692	509	PREDICTED: LIMR family protein At5g01460	1.0	0.392	0.945	1e-106
224140417	509	predicted protein [Populus trichocarpa]	1.0	0.392	0.945	1e-106
224087748	509	predicted protein [Populus trichocarpa]	1.0	0.392	0.93	1e-104
449461773	509	PREDICTED: LIMR family protein At3g08930	1.0	0.392	0.925	1e-103
15240980	509	LMBR1-like membrane protein [Arabidopsis	1.0	0.392	0.9	1e-102
297829416	509	hypothetical protein ARALYDRAFT_478196 [	1.0	0.392	0.895	1e-102
297810257	509	LMBR1 integral membrane family protein [	1.0	0.392	0.89	1e-102
255574363	509	conserved hypothetical protein [Ricinus	1.0	0.392	0.915	1e-102
145338276	509	LMBR1-like membrane protein [Arabidopsis	1.0	0.392	0.885	1e-101
356503397	508	PREDICTED: LIMR family protein At3g08930	1.0	0.393	0.945	3e-98

>gi|225440692|ref|XP_002280330.1| PREDICTED: LIMR family protein At5g01460 [Vitis vinifera] gi|297740207|emb|CBI30389.3| unnamed protein product [Vitis vinifera]

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 189/200 (94%), Positives = 198/200 (99%)

Query: 1   MYPQGEKAETSWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIK 60
           MYPQGEKAET+WALTVLGYLAKLVLGILG IVSVAW+AHIVIYLLI+PPL PFLNEVFIK
Sbjct: 310 MYPQGEKAETTWALTVLGYLAKLVLGILGLIVSVAWIAHIVIYLLIDPPLSPFLNEVFIK 369

Query: 61  LDDLWGLLGTAAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLI 120
           LDD+WGLLGTAAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLI
Sbjct: 370 LDDVWGLLGTAAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLI 429

Query: 121 LLCSISVIQFCSTAFGYYAQATAAQEIFGHTLESLRGIKYLYKYNVFQIAFVVLAGLTFV 180
           LLCSISVIQFC+TAFGYYAQATAAQEIFGHTLESL+GIKYLYKYNVFQIAF+VLAGLTFV
Sbjct: 430 LLCSISVIQFCATAFGYYAQATAAQEIFGHTLESLKGIKYLYKYNVFQIAFIVLAGLTFV 489

Query: 181 YYAAFGWRRRKPSGKFQLSS 200
           YYAAFGWRRR+PSG+FQLSS
Sbjct: 490 YYAAFGWRRRRPSGRFQLSS 509

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140417|ref|XP_002323579.1| predicted protein [Populus trichocarpa] gi|222868209|gb|EEF05340.1| predicted protein [Populus trichocarpa]

 Score =  388 bits (997), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 189/200 (94%), Positives = 197/200 (98%)

Query: 1   MYPQGEKAETSWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIK 60
           +YPQGEKAETSWALTVLGYLAKLVLGILG IVSVAWVAHI+IYLLI+PPL PFLNEVFIK
Sbjct: 310 VYPQGEKAETSWALTVLGYLAKLVLGILGLIVSVAWVAHIIIYLLIDPPLSPFLNEVFIK 369

Query: 61  LDDLWGLLGTAAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLI 120
           LDD+WGLLGT AFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLI
Sbjct: 370 LDDIWGLLGTVAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLI 429

Query: 121 LLCSISVIQFCSTAFGYYAQATAAQEIFGHTLESLRGIKYLYKYNVFQIAFVVLAGLTFV 180
           LLCSISVIQFC+TAFGYYAQATAAQEIFGHTL+SLRGIKYLYKYNVFQIAFVVLAGLTFV
Sbjct: 430 LLCSISVIQFCATAFGYYAQATAAQEIFGHTLQSLRGIKYLYKYNVFQIAFVVLAGLTFV 489

Query: 181 YYAAFGWRRRKPSGKFQLSS 200
           YYAAFGWRR+KPSG+FQLSS
Sbjct: 490 YYAAFGWRRKKPSGRFQLSS 509

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224087748|ref|XP_002308217.1| predicted protein [Populus trichocarpa] gi|222854193|gb|EEE91740.1| predicted protein [Populus trichocarpa]

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 186/200 (93%), Positives = 196/200 (98%)

Query: 1   MYPQGEKAETSWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIK 60
           MYPQGEKAET+WALTVLGYLAKLVLGILG IVSVAWVAHI+IYLL++PPL PFLNEVFIK
Sbjct: 310 MYPQGEKAETAWALTVLGYLAKLVLGILGLIVSVAWVAHIIIYLLVDPPLSPFLNEVFIK 369

Query: 61  LDDLWGLLGTAAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLI 120
           LDD+WGLLGT AFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLI
Sbjct: 370 LDDIWGLLGTVAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLI 429

Query: 121 LLCSISVIQFCSTAFGYYAQATAAQEIFGHTLESLRGIKYLYKYNVFQIAFVVLAGLTFV 180
           LLCSISVIQFC+TAFGYYAQATAAQEIFGHTL+SLRGIKYLYKYNVFQI+FVVLAGLTFV
Sbjct: 430 LLCSISVIQFCATAFGYYAQATAAQEIFGHTLQSLRGIKYLYKYNVFQISFVVLAGLTFV 489

Query: 181 YYAAFGWRRRKPSGKFQLSS 200
           YYAAFGWRR+K SG+FQLSS
Sbjct: 490 YYAAFGWRRKKRSGRFQLSS 509

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461773|ref|XP_004148616.1| PREDICTED: LIMR family protein At3g08930-like [Cucumis sativus] gi|449522716|ref|XP_004168372.1| PREDICTED: LIMR family protein At3g08930-like [Cucumis sativus]

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 185/200 (92%), Positives = 194/200 (97%)

Query: 1   MYPQGEKAETSWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIK 60
           MYPQGEKAET+WALTVLGYLAKLVLG+LG IVSVAWV HIVIYLLI+PPL PFLNEVFIK
Sbjct: 310 MYPQGEKAETAWALTVLGYLAKLVLGVLGLIVSVAWVVHIVIYLLIDPPLSPFLNEVFIK 369

Query: 61  LDDLWGLLGTAAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLI 120
           LDD+WGLLGTAAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLI
Sbjct: 370 LDDVWGLLGTAAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLI 429

Query: 121 LLCSISVIQFCSTAFGYYAQATAAQEIFGHTLESLRGIKYLYKYNVFQIAFVVLAGLTFV 180
           LLCSISVIQFCSTAF YYA+ATAAQEIFGHTL+SLRGIKYLYKYNVFQIAF+ LAGLTFV
Sbjct: 430 LLCSISVIQFCSTAFAYYARATAAQEIFGHTLQSLRGIKYLYKYNVFQIAFIALAGLTFV 489

Query: 181 YYAAFGWRRRKPSGKFQLSS 200
           YYAAFGWRR+K SG+FQLSS
Sbjct: 490 YYAAFGWRRKKLSGRFQLSS 509

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15240980|ref|NP_195766.1| LMBR1-like membrane protein [Arabidopsis thaliana] gi|75181394|sp|Q9M028.1|LMBD2_ARATH RecName: Full=LIMR family protein At5g01460 gi|7320724|emb|CAB81929.1| putative protein [Arabidopsis thaliana] gi|18176296|gb|AAL60018.1| unknown protein [Arabidopsis thaliana] gi|20465353|gb|AAM20080.1| unknown protein [Arabidopsis thaliana] gi|332002964|gb|AED90347.1| LMBR1-like membrane protein [Arabidopsis thaliana]

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 180/200 (90%), Positives = 194/200 (97%)

Query: 1   MYPQGEKAETSWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIK 60
           MYPQGE+AET+WA TVLGYLAK VLGILG IVSVAW+AHI+IYLL++PPL PFLNEVFIK
Sbjct: 310 MYPQGEQAETAWAFTVLGYLAKFVLGILGLIVSVAWIAHIIIYLLVDPPLSPFLNEVFIK 369

Query: 61  LDDLWGLLGTAAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLI 120
           LDD+WGLLGTAAFAFFCFYLLLAVIAGAMMLGL+LVFITIHPMKWGATLMNSFLFNVGLI
Sbjct: 370 LDDVWGLLGTAAFAFFCFYLLLAVIAGAMMLGLKLVFITIHPMKWGATLMNSFLFNVGLI 429

Query: 121 LLCSISVIQFCSTAFGYYAQATAAQEIFGHTLESLRGIKYLYKYNVFQIAFVVLAGLTFV 180
           LLCSISVIQFC+TAFGYYAQATAAQEIFGHTL+SLRGIKYLYKYNVFQI FVVLAGLTF+
Sbjct: 430 LLCSISVIQFCATAFGYYAQATAAQEIFGHTLQSLRGIKYLYKYNVFQIGFVVLAGLTFL 489

Query: 181 YYAAFGWRRRKPSGKFQLSS 200
           YY AFGWRR+KPSG+FQLS+
Sbjct: 490 YYIAFGWRRKKPSGRFQLST 509

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297829416|ref|XP_002882590.1| hypothetical protein ARALYDRAFT_478196 [Arabidopsis lyrata subsp. lyrata] gi|297328430|gb|EFH58849.1| hypothetical protein ARALYDRAFT_478196 [Arabidopsis lyrata subsp. lyrata]

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 179/200 (89%), Positives = 194/200 (97%)

Query: 1   MYPQGEKAETSWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIK 60
           MYPQGE+AET+WA TVLGYLAK +LGILG IVS+AWVAHI+IYLL++PPL PFLNEVFIK
Sbjct: 310 MYPQGEQAETAWAFTVLGYLAKFILGILGLIVSIAWVAHIIIYLLVDPPLSPFLNEVFIK 369

Query: 61  LDDLWGLLGTAAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLI 120
           LDD+WGLLGTAAFAFFCFYLLLAVIAGAMMLGL+LVFITIHPMKWGATLMNSFLFNVGLI
Sbjct: 370 LDDVWGLLGTAAFAFFCFYLLLAVIAGAMMLGLKLVFITIHPMKWGATLMNSFLFNVGLI 429

Query: 121 LLCSISVIQFCSTAFGYYAQATAAQEIFGHTLESLRGIKYLYKYNVFQIAFVVLAGLTFV 180
           LLCSISVIQFC+TAFGYYAQATAAQEIFGHTL+SLRGIKYLYKYNVFQI FV+LAGLTF+
Sbjct: 430 LLCSISVIQFCATAFGYYAQATAAQEIFGHTLQSLRGIKYLYKYNVFQIGFVILAGLTFL 489

Query: 181 YYAAFGWRRRKPSGKFQLSS 200
           YY AFGWRR+KPSG+FQLSS
Sbjct: 490 YYIAFGWRRKKPSGRFQLSS 509

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297810257|ref|XP_002873012.1| LMBR1 integral membrane family protein [Arabidopsis lyrata subsp. lyrata] gi|297318849|gb|EFH49271.1| LMBR1 integral membrane family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 178/200 (89%), Positives = 194/200 (97%)

Query: 1   MYPQGEKAETSWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIK 60
           MYPQGE+AET+WA TVLGYLAK +LGILG IVSVAW+AHI+IYLL++PPL PFLNEVFIK
Sbjct: 310 MYPQGEQAETAWAFTVLGYLAKFILGILGLIVSVAWIAHIIIYLLVDPPLSPFLNEVFIK 369

Query: 61  LDDLWGLLGTAAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLI 120
           LDD+WGLLGTAAFAFFCFYLLL+VIAGAMMLGL+LVFITIHPMKWGATLMNSFLFNVGLI
Sbjct: 370 LDDVWGLLGTAAFAFFCFYLLLSVIAGAMMLGLKLVFITIHPMKWGATLMNSFLFNVGLI 429

Query: 121 LLCSISVIQFCSTAFGYYAQATAAQEIFGHTLESLRGIKYLYKYNVFQIAFVVLAGLTFV 180
           LLCSISVIQFC+TAFGYYAQATAAQEIFGHTL+SLRGIKYLYKYNVFQI FVVLAGLTF+
Sbjct: 430 LLCSISVIQFCATAFGYYAQATAAQEIFGHTLQSLRGIKYLYKYNVFQIGFVVLAGLTFL 489

Query: 181 YYAAFGWRRRKPSGKFQLSS 200
           YY AFGWRR+KPSG+FQLS+
Sbjct: 490 YYIAFGWRRKKPSGRFQLST 509

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574363|ref|XP_002528095.1| conserved hypothetical protein [Ricinus communis] gi|223532484|gb|EEF34274.1| conserved hypothetical protein [Ricinus communis]

 Score =  375 bits (962), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 183/200 (91%), Positives = 192/200 (96%)

Query: 1   MYPQGEKAETSWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIK 60
           MYPQGEKAETSWALTVLGYLAKLVLGILG IVSVAWVAHIVIYLLI+PPL PFLNEVFIK
Sbjct: 310 MYPQGEKAETSWALTVLGYLAKLVLGILGLIVSVAWVAHIVIYLLISPPLSPFLNEVFIK 369

Query: 61  LDDLWGLLGTAAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLI 120
           LDD+WGLLGT AFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWG TLMNSFLFNVGLI
Sbjct: 370 LDDVWGLLGTVAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGGTLMNSFLFNVGLI 429

Query: 121 LLCSISVIQFCSTAFGYYAQATAAQEIFGHTLESLRGIKYLYKYNVFQIAFVVLAGLTFV 180
           LLCSISVIQFCSTAFGYYAQATAAQEIFGHTL+SLRGIKYLYKYNVFQ AF+VLA +T +
Sbjct: 430 LLCSISVIQFCSTAFGYYAQATAAQEIFGHTLQSLRGIKYLYKYNVFQYAFIVLAVVTLL 489

Query: 181 YYAAFGWRRRKPSGKFQLSS 200
            YAAFGWRR+KP+G+FQLSS
Sbjct: 490 LYAAFGWRRKKPTGRFQLSS 509

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145338276|ref|NP_566338.2| LMBR1-like membrane protein [Arabidopsis thaliana] gi|226789815|sp|Q9SR93.2|LMBD1_ARATH RecName: Full=LIMR family protein At3g08930 gi|14334836|gb|AAK59596.1| unknown protein [Arabidopsis thaliana] gi|24417362|gb|AAN60291.1| unknown [Arabidopsis thaliana] gi|56550703|gb|AAV97805.1| At3g08930 [Arabidopsis thaliana] gi|332641175|gb|AEE74696.1| LMBR1-like membrane protein [Arabidopsis thaliana]

 Score =  372 bits (955), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 177/200 (88%), Positives = 193/200 (96%)

Query: 1   MYPQGEKAETSWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIK 60
           MYPQGE+AET+WA TVLGYLAK +LGI+G IVS+AWVAHI+IYLL++PPL PFLNEVFIK
Sbjct: 310 MYPQGEQAETAWAFTVLGYLAKFILGIVGLIVSIAWVAHIIIYLLVDPPLSPFLNEVFIK 369

Query: 61  LDDLWGLLGTAAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLI 120
           LDD+WGLLGTAAFAFFCFYLLLAVIAGAMMLGL+LVFITIHPMKWGATLMNSFLFNVGLI
Sbjct: 370 LDDVWGLLGTAAFAFFCFYLLLAVIAGAMMLGLKLVFITIHPMKWGATLMNSFLFNVGLI 429

Query: 121 LLCSISVIQFCSTAFGYYAQATAAQEIFGHTLESLRGIKYLYKYNVFQIAFVVLAGLTFV 180
           LLCSISVIQFC+TAFGYYAQATAAQEIFGHTL+SLRGIKYLYKYNVFQI FV+LAGLTF+
Sbjct: 430 LLCSISVIQFCATAFGYYAQATAAQEIFGHTLQSLRGIKYLYKYNVFQIGFVILAGLTFL 489

Query: 181 YYAAFGWRRRKPSGKFQLSS 200
           YY AFGWRR+K SG+FQLSS
Sbjct: 490 YYIAFGWRRKKTSGRFQLSS 509

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356503397|ref|XP_003520496.1| PREDICTED: LIMR family protein At3g08930-like [Glycine max]

 Score =  362 bits (930), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 189/200 (94%), Positives = 195/200 (97%)

Query: 1   MYPQGEKAETSWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIK 60
           MYPQGEKAET+WALTVLGYLAK VLGILG IVSVAWVAHI+IYLLI+PPL PFLNEVFIK
Sbjct: 309 MYPQGEKAETTWALTVLGYLAKFVLGILGLIVSVAWVAHIIIYLLIDPPLSPFLNEVFIK 368

Query: 61  LDDLWGLLGTAAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLI 120
           LDD+WGLLGTAAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLI
Sbjct: 369 LDDIWGLLGTAAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLI 428

Query: 121 LLCSISVIQFCSTAFGYYAQATAAQEIFGHTLESLRGIKYLYKYNVFQIAFVVLAGLTFV 180
           LLCSISVIQFCSTAF YYAQATAAQEIFGHTLESLRGIKYLYKYNVFQIAFV LAGLTFV
Sbjct: 429 LLCSISVIQFCSTAFAYYAQATAAQEIFGHTLESLRGIKYLYKYNVFQIAFVALAGLTFV 488

Query: 181 YYAAFGWRRRKPSGKFQLSS 200
           YYAAFGWRR+KPSG+FQLSS
Sbjct: 489 YYAAFGWRRKKPSGRFQLSS 508

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	200
TAIR|locus:2179197	509	AT5G01460 [Arabidopsis thalian	1.0	0.392	0.835	5.9e-89
TAIR|locus:2097618	509	AT3G08930 [Arabidopsis thalian	1.0	0.392	0.82	6.7e-88
DICTYBASE|DDB_G0283707	507	DDB_G0283707 "LMBR1-like conse	0.82	0.323	0.386	9.5e-28
DICTYBASE|DDB_G0293610	507	DDB_G0293610 "LMBR1-like conse	0.825	0.325	0.372	3.5e-27

TAIR|locus:2179197 AT5G01460 [Arabidopsis thaliana (taxid:3702)]

 Score = 888 (317.7 bits), Expect = 5.9e-89, P = 5.9e-89
 Identities = 167/200 (83%), Positives = 181/200 (90%)

Query:     1 MYPQGEKAETSWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIK 60
             MYPQGE+AET+WA TVLGYLAK VLGILG IVSVAW+AHI+IYLL++PPL PFLNEVFIK
Sbjct:   310 MYPQGEQAETAWAFTVLGYLAKFVLGILGLIVSVAWIAHIIIYLLVDPPLSPFLNEVFIK 369

Query:    61 LDDLWGLLGTXXXXXXXXXXXXXVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLI 120
             LDD+WGLLGT             VIAGAMMLGL+LVFITIHPMKWGATLMNSFLFNVGLI
Sbjct:   370 LDDVWGLLGTAAFAFFCFYLLLAVIAGAMMLGLKLVFITIHPMKWGATLMNSFLFNVGLI 429

Query:   121 LLCSISVIQFCSTAFGYYAQATAAQEIFGHTLESLRGIKYLYKYNVFQIAFVVLAGLTFV 180
             LLCSISVIQFC+TAFGYYAQATAAQEIFGHTL+SLRGIKYLYKYNVFQI FVVLAGLTF+
Sbjct:   430 LLCSISVIQFCATAFGYYAQATAAQEIFGHTLQSLRGIKYLYKYNVFQIGFVVLAGLTFL 489

Query:   181 YYAAFGWRRRKPSGKFQLSS 200
             YY AFGWRR+KPSG+FQLS+
Sbjct:   490 YYIAFGWRRKKPSGRFQLST 509

GO:0005576 "extracellular region" evidence=ISM

GO:0016020 "membrane" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2097618 AT3G08930 [Arabidopsis thaliana (taxid:3702)]

 Score = 878 (314.1 bits), Expect = 6.7e-88, P = 6.7e-88
 Identities = 164/200 (82%), Positives = 180/200 (90%)

Query:     1 MYPQGEKAETSWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIK 60
             MYPQGE+AET+WA TVLGYLAK +LGI+G IVS+AWVAHI+IYLL++PPL PFLNEVFIK
Sbjct:   310 MYPQGEQAETAWAFTVLGYLAKFILGIVGLIVSIAWVAHIIIYLLVDPPLSPFLNEVFIK 369

Query:    61 LDDLWGLLGTXXXXXXXXXXXXXVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLI 120
             LDD+WGLLGT             VIAGAMMLGL+LVFITIHPMKWGATLMNSFLFNVGLI
Sbjct:   370 LDDVWGLLGTAAFAFFCFYLLLAVIAGAMMLGLKLVFITIHPMKWGATLMNSFLFNVGLI 429

Query:   121 LLCSISVIQFCSTAFGYYAQATAAQEIFGHTLESLRGIKYLYKYNVFQIAFVVLAGLTFV 180
             LLCSISVIQFC+TAFGYYAQATAAQEIFGHTL+SLRGIKYLYKYNVFQI FV+LAGLTF+
Sbjct:   430 LLCSISVIQFCATAFGYYAQATAAQEIFGHTLQSLRGIKYLYKYNVFQIGFVILAGLTFL 489

Query:   181 YYAAFGWRRRKPSGKFQLSS 200
             YY AFGWRR+K SG+FQLSS
Sbjct:   490 YYIAFGWRRKKTSGRFQLSS 509

GO:0005576 "extracellular region" evidence=ISM

GO:0009506 "plasmodesma" evidence=IDA

GO:0007033 "vacuole organization" evidence=RCA

DICTYBASE|DDB_G0283707 DDB_G0283707 "LMBR1-like conserved region-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 314 (115.6 bits), Expect = 9.5e-28, P = 9.5e-28
 Identities = 65/168 (38%), Positives = 99/168 (58%)

Query:    16 VLGYLAKLVLGILGFIVSVAWVAHIVIYLLINP-PLHPFLNEVFIKLDDLWGLLGTXXXX 74
             V+ Y A+   G +   VS+ W+ HI+IY++  P P HPFLN + I L++ WG LG     
Sbjct:   328 VIFYYAQFFGGFVALGVSLGWLLHIIIYMITAPEPFHPFLNSLVIALNNAWGFLGVIVYG 387

Query:    75 XXXXXXXXXVIAGAMMLGLRLVFI-TIHPMKWGATLMNSFLFNVGLILLCSISVIQFCST 133
                      V+ G    GLRL F+  IHPM+ G T+MN+FLFNVGLIL+ S+S+  FC+ 
Sbjct:   388 LLSFYLLFCVVKGNFKFGLRLFFLFPIHPMRVGNTMMNAFLFNVGLILITSVSITHFCTM 447

Query:   134 AFGYYAQATAAQEIFGHTLESLRGIKYLYKYNVFQIAFVVLAGLTFVY 181
             AF  +   TA   +F   +++L+ +K+ +   +F + FV +A LT ++
Sbjct:   448 AFSQFTSTTAINSLFETAVKNLKILKWFWVVYIFGV-FV-MAVLTAIF 493

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

DICTYBASE|DDB_G0293610 DDB_G0293610 "LMBR1-like conserved region-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 309 (113.8 bits), Expect = 3.5e-27, P = 3.5e-27
 Identities = 63/169 (37%), Positives = 98/169 (57%)

Query:    16 VLGYLAKLVLGILGFIVSVAWVAHIVIYLLINP-PLHPFLNEVFIKLDDLWGLLGTXXXX 74
             V+ Y A+   G +   VS+ W+ HI+IY++  P P HPFLN + I L++ WG LG     
Sbjct:   328 VILYYAQFFGGFIALGVSLGWLLHIIIYMITAPEPFHPFLNSLVISLNNAWGFLGVIVYG 387

Query:    75 XXXXXXXXXVIAGAMMLGLRLVFI-TIHPMKWGATLMNSFLFNVGLILLCSISVIQFCST 133
                      V+ G    GLRL F+  IHPM+ G T+MN+FLFNVGLIL+ S+S+  FC+ 
Sbjct:   388 LLSFYLLFCVVKGNFKFGLRLFFLFPIHPMRVGNTMMNAFLFNVGLILITSVSITHFCTM 447

Query:   134 AFGYYAQATAAQEIFGHTLESLRGIKYLYKYNVFQI-AFVVLAGLTFVY 181
             AF  +   T+   +F   +++L+ +K+ +   +F I A  +L  + F++
Sbjct:   448 AFSQFTSTTSINSLFETAVKNLKILKWFWVVYIFAIFAMSILTAI-FLF 495


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.330   0.144   0.455    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      200       187   0.00085  110 3  11 21  0.47    31
                                                     31  0.41    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  610 (65 KB)
  Total size of DFA:  162 KB (2095 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.04u 0.11s 16.15t   Elapsed:  00:00:01
  Total cpu time:  16.04u 0.11s 16.15t   Elapsed:  00:00:01
  Start:  Mon May 20 21:01:20 2013   End:  Mon May 20 21:01:21 2013

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9M028	LMBD2_ARATH	No assigned EC number	0.9	1.0	0.3929	yes	no
Q9SR93	LMBD1_ARATH	No assigned EC number	0.885	1.0	0.3929	yes	no
Q658I5	LMBD1_ORYSJ	No assigned EC number	0.815	1.0	0.3921	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00021508001 SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (509 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	200
pfam04791	419	pfam04791, LMBR1, LMBR1-like membrane protein	1e-35

>gnl|CDD|218267 pfam04791, LMBR1, LMBR1-like membrane protein

 Score =  128 bits (324), Expect = 1e-35
 Identities = 41/172 (23%), Positives = 66/172 (38%), Gaps = 9/172 (5%)

Query: 8   AETSWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGL 67
                  T+L      +LG++   +S+  V   + +   +     FLN + I     +GL
Sbjct: 257 VYPLAMYTLLVLTFCSILGVVTNTLSLLVVESELPFFTRD-----FLNVIGIASFSKFGL 311

Query: 68  LGTAAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLILLCSISV 127
            G A      FYL+ +   G   L     F+  +  K   T M   + N G +L  S   
Sbjct: 312 FGAAVEFLLIFYLMYSSYVGFYSLP----FLRYYRPKPHDTTMTQSIINSGSLLCRSALP 367

Query: 128 IQFCSTAFGYYAQATAAQEIFGHTLESLRGIKYLYKYNVFQIAFVVLAGLTF 179
           +        ++    +  EIFG  L SL  +   Y   ++ I FV+L GL  
Sbjct: 368 VCSNFLGLTHFDLLGSFGEIFGLDLISLIWLGNFYYVLLYNILFVILTGLRL 419

Members of this family are integral membrane proteins that are around 500 residues in length. LMBR1 is not involved in preaxial polydactyly, as originally thought. Vertebrate members of this family may play a role in limb development. A member of this family has been shown to be a lipocalin membrane receptor. Length = 419

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	200
PF04791	471	LMBR1: LMBR1-like membrane protein; InterPro: IPR0	99.8

>PF04791 LMBR1: LMBR1-like membrane protein; InterPro: IPR006876 This group of uncharacterised proteins have a conserved C-terminal region which is found in LMBR1 and in the lipocalin-1 receptor

Probab=99.80  E-value=6.5e-19  Score=161.89  Aligned_cols=153  Identities=24%  Similarity=0.349  Sum_probs=140.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhHhhhh
Q 029017           14 LTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGTAAFAFFCFYLLLAVIAGAMMLGL   93 (200)
Q Consensus        14 ~~~l~~y~~L~lGii~~iiSi~WilHIily~l~~~p~~pfLN~~fi~Ld~~~~llgt~~ya~f~~YLl~c~ikG~~k~Gl   93 (200)
                      +..+.++.+.++|+++.++|++|+.|.+.....+     +++.+++..|+.++.+|.++.+++.+|+++|+.+|.+++|.
T Consensus       317 ~~~l~~~~~~il~Vi~~ilSlli~~sEl~~~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~l~Ym~~ct~~glf~~~~  391 (471)
T PF04791_consen  317 YCYLRPYVYKILAVIFAILSLLIVWSELTFFFRS-----FLFSIFISSDSKFGFLGQLLSFLFLFYMCFCTYYGLFKLKI  391 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHhHHhhhhh
Confidence            3466888889999999999999999999887766     99999999999999999999999999999999999999998


Q ss_pred             hcceeEeeeeccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhccccceeeeehhhHHHHHHH
Q 029017           94 RLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQFCSTAFGYYAQATAAQEIFGHTLESLRGIKYLYKYNVFQIAFVV  173 (200)
Q Consensus        94 rl~~f~ihPMk~~~T~mnSfLFN~~LiLl~s~aviQFc~~aF~~Ya~~T~i~~if~~~v~~L~gi~y~~~~nvf~y~~l~  173 (200)
                          +..|||++|+|.+++.|+|.++.+..+.+.+||+..+|..|++.|+.+++  .+++++.|.|+++.++++++++.+
T Consensus       392 ----f~~y~l~p~~ts~~~sL~f~a~~l~Rl~~PL~fNfl~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  465 (471)
T PF04791_consen  392 ----FRFYPLVPHHTSDNSSLFFSAIYLCRLAPPLCFNFLGMIRYDSTTSFNNI--VQIQSLLGLGFFYYFPIFILLFCI  465 (471)
T ss_pred             ----heeccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccc--cccccceecchHHHHHHHHHHHHH
Confidence                99999999999999999999999999999999999999999999999988  677799999999988877777766


Q ss_pred             HHHH
Q 029017          174 LAGL  177 (200)
Q Consensus       174 ~s~L  177 (200)
                      .+.+
T Consensus       466 ~t~~  469 (471)
T PF04791_consen  466 LTYF  469 (471)
T ss_pred             HHHH
Confidence            6554

LMBR1 was thought to play a role in preaxial polydactyly, but recent evidence now suggests this not to be the case [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00