Citrus Sinensis ID: 029036

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200
Protein Sequence
MSGDLYSERPLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKLDVGDNGSAAWFLQDLATEQDAEGCTLLEQSGVVEAPGLRYKDLPATVTTAVGQMGRQGREAQNIVKVYLANLRLKEVGTDVLVTAYEPLLINPLSESASTVGAGLPVPATQSGFMQMSEVFKLAVSSFKVNDWSLFGGTAAA
Secondary Structure (PSIPRED)
ccccccccccccccEEEEcccccccccccccccccccEEEEcccccEEEEEEEEEEcccccccHHHHHHHHHHcccccccccEEEEEccEEEccccccccccEEEEEEEEEEcccccccccEEEEEEEEEEcccccccEEEEEccccccccccccccccccccccccccccccHHHHHHHHHHcEEEEcccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEHHHcEEEEEcccEEEHHHcccccccEEEEEEcccccEEEEEEHHcccccccHHHHHHHHHHHHcccccccEEEEEccccccccccccccccEEEEEcccccccccccccccEEEEEEEEEccccccEEEEEEEccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcEEccccHccccccc
Coil and Loop (DISEMBL)
msgdlyserplfggaisssfphrfqdvsnirqvpdhqevfvdpsrdESLIFELLDfkldvgdngsaAWFLQDLATEqdaegctlleqsgvveapglrykdlpatvTTAVgqmgrqgrEAQNIVKVYLANLRLKEVGTDVLvtayepllinplsesastvgaglpvpatqsgfmQMSEVFKLAVSSFkvndwslfggtaaa
Flexible Loop (DISEMBL)
MSGDLYSERPLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKLDVGDNGSAAWFLQDLATEQDAEGCTLLEqsgvveapglrykDLPATVTTAVgqmgrqgreaQNIVKVYLANLRLKEVGTDVLVTAYEPLLINPLSESASTVGAGLPVPATQSGFMQMSEVFKLAVSSFKVNDWSLFGGTAAA
Low Complexity Region (SEG)
MSGDLYSERPLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKLDVGDNGSAAWFLQDLATEQDAEGCTLLEQSGVVEAPGLRYKDLPATVTTAVGQMGRQGREAQNIVKVYLANLRLKEVGTDVLVTAYEPLLINPLSESASTVGAGLPVPATQSGFMQMSEVFKLAVSSFKVNDWSLFGGTAAA
Disordered region (IsUnstruct)
*****************************I******QEVFVDPSRDESLIFELLDFKLDVGDNGSAAWFLQDLATEQDAEGCTLLEQSGVVEAPGLRYKDLPATVTTAVGQMGRQGREAQNIVKVYLANLRLKEVGTDVLVTAYEPLLINPLSESASTVGAGLPVPATQSGFMQMSEVFKLAVSSFKVNDWSLFG*****
Disordered Region (DISOPRED)
****LYS**PLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKLDVGDNGSAAWFLQDLATEQDAEGCTLLEQSGVVEAPGLRYKDLPATV******************KVYLANLRLKEVGTDVLVTAYEPLL*********************SGFMQMSEVFKLAVSSFKVNDWSLFGGT***
Disordered Region (DISEMBL)
MSGDLYSERPLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKLDVGDNGSAAWFLQDLATEQDAEGCTLLEQSGVVEAPGLRYKDLPATVTTAVGQMGRQGREAQNIVKVYLANLRLKEVGTDVLVTAYEPLLINPLSESASTVGAGLPVPATQSGFMQMSEVFKLAVSSFKVNDWSLFGGTAAA
Disordered Region (DISPRO)
****LYSERPLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKLDVGDNGSAAWFLQDLATEQDAEGCTLLEQSGVVEAPGLRYKDLPATVTTAVGQMGRQGREAQNIVKVYLANLRLKEVGTDVLVTAYEPLLI***************VPATQSGFMQMSEVFKLAVSSFKVNDWSLFGG****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSGDLYSERPLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKLDVGDNGSAAWFLQDLATEQDAEGCTLLEQSGVVEAPGLRYKDLPATVTTAVGQMGRQGREAQNIVKVYLANLRLKEVGTDVLVTAYEPLLINPLSESASTVGAGLPVPATQSGFMQMSEVFKLAVSSFKVNDWSLFGGTAAA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	200	2.2.26 [Sep-21-2011]
Q54ML6	195	Probable ran guanine nucl	yes	no	0.935	0.958	0.301	1e-19
Q32PE2	186	Ran guanine nucleotide re	yes	no	0.89	0.956	0.317	1e-15
Q9JIB0	185	Ran guanine nucleotide re	yes	no	0.875	0.945	0.331	5e-15
Q9HD47	186	Ran guanine nucleotide re	yes	no	0.875	0.940	0.324	7e-15
O75002	190	Nuclear import protein mo	yes	no	0.905	0.952	0.267	3e-10
P47123	218	Nuclear import protein MO	yes	no	0.86	0.788	0.297	3e-08

>sp|Q54ML6|MOG1_DICDI Probable ran guanine nucleotide release factor OS=Dictyostelium discoideum GN=mog1 PE=3 SV=1

 Score = 96.3 bits (238), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 59/196 (30%), Positives = 97/196 (49%), Gaps = 9/196 (4%)

Query: 3   GDLYSERPLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKLDVGD 62
            + + +R L+GGAI    P RF DV++ R +PDHQE+F D   D+S+I EL +F+  + +
Sbjct: 2   SETFEKRQLYGGAIEIDIPRRFIDVTSYRHIPDHQELFSDEKSDQSVIIELNEFQDHISN 61

Query: 63  NGSAAW----FLQDLATEQDAEGCTLLEQSGVVEAPGLRYKDLPATVTTAVGQMGRQGRE 118
             +        ++D     D        +    E P      +P  V  A  ++ +    
Sbjct: 62  ANAIKHHYEVLVEDAGISTDKSVILNFRELTQAEMPNFD-ASIPKYVLLAQQKIAKFNET 120

Query: 119 AQNIVKVYLANLRLKEVGTDVLVTAYEPLLINPLSESASTVGAGLPVPATQSGFMQMSEV 178
           A+N + +Y+A +RL++  TD+L+T  E + + P S S + V    P    QS   Q+   
Sbjct: 121 AENTINIYMALVRLEKSKTDLLITFNEAIALAPTSSSVAVVQNLTP-SNDQSKSEQL--- 176

Query: 179 FKLAVSSFKVNDWSLF 194
           F   + SFK+ D+SLF
Sbjct: 177 FLTMLKSFKIKDYSLF 192

May regulate the intracellular trafficking of ran.
Dictyostelium discoideum (taxid: 44689)

>sp|Q32PE2|MOG1_BOVIN Ran guanine nucleotide release factor OS=Bos taurus GN=RANGRF PE=2 SV=1

 Score = 83.2 bits (204), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/189 (31%), Positives = 96/189 (50%), Gaps = 11/189 (5%)

Query: 8   ERPLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKLDVGDNGSAA 67
           + PLFGGA S++ P    DVS++R VPDHQEVF     D+SLI ELL+ +  V    +A 
Sbjct: 6   DNPLFGGAFSATLPPGAIDVSDLRPVPDHQEVFCHRVTDQSLIVELLELQAHVQGEEAAR 65

Query: 68  WFLQDLATEQDAEGCTL-LEQSGVVEAPGLRYKDLPATVTTAVGQMGRQGREAQNIVKVY 126
           +  +D+   Q+A    +   Q  V+E   LR     A + +   Q+ ++ ++    V ++
Sbjct: 66  YHFEDVGGVQEARAVQVETVQPLVLEKLALRGCCQEAWILSGQQQVAKENQQVAKYVTLH 125

Query: 127 LANLRLKEVGTDVLVTAYEPLLINPLSESASTVGAGLPVPATQSGFMQMSEVFKLAVSSF 186
            A LRL +  TD+L+T  +P    P    +S     L +P    G       F+  V+S 
Sbjct: 126 QALLRLPQYQTDLLLTFNQP----PPENRSSLGPENLSIPPWSLG------DFEQLVTSL 175

Query: 187 KVNDWSLFG 195
            ++D ++FG
Sbjct: 176 TLHDPNIFG 184

May regulate the intracellular trafficking of RAN. In cardiac cells seems to regulate the cell surface localization of SCN5A.

Bos taurus (taxid: 9913)

>sp|Q9JIB0|MOG1_MOUSE Ran guanine nucleotide release factor OS=Mus musculus GN=Rangrf PE=1 SV=1

 Score = 80.9 bits (198), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 62/187 (33%), Positives = 93/187 (49%), Gaps = 12/187 (6%)

Query: 10  PLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKLDVGDNGSAAWF 69
           PLFGGA S+  P    DVS++R VPD+QEVF  P  D+SLI ELL+ +  V    +A + 
Sbjct: 8   PLFGGAFSAILPTGAIDVSDLRPVPDNQEVFCHPVTDQSLIIELLELQAHVQGEAAARYH 67

Query: 70  LQDLATEQDAEGCTLLE-QSGVVEAPGLRYKDLPATVTTAVGQMGRQGREAQNIVKVYLA 128
            +D+   Q A    +L  Q   +E   LR     A   +   Q+ ++ ++    V ++ A
Sbjct: 68  FEDVGRVQGARAVHVLSVQPLCLENLSLRGCCQDAWSLSGKQQVAKENQQVAKDVTLHQA 127

Query: 129 NLRLKEVGTDVLVTAYEPLLINPLSESASTVGAGLPVPATQSGFMQMSEVFKLAVSSFKV 188
            LRL +  TD+L+T  +P      S S        P P + S F Q+       V+S  +
Sbjct: 128 LLRLPQYQTDLLLTFNQPPCH---SRSLGPENLSCP-PWSLSNFEQL-------VTSLTL 176

Query: 189 NDWSLFG 195
           +D +LFG
Sbjct: 177 HDPNLFG 183

May regulate the intracellular trafficking of RAN. In cardiac cells seems to regulate the cell surface localization of SCN5A.

Mus musculus (taxid: 10090)

>sp|Q9HD47|MOG1_HUMAN Ran guanine nucleotide release factor OS=Homo sapiens GN=RANGRF PE=1 SV=1

 Score = 80.5 bits (197), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 61/188 (32%), Positives = 95/188 (50%), Gaps = 13/188 (6%)

Query: 10  PLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKLDVGDNGSAAWF 69
           PLFGGA S+  P    DVS++R VPD+QEVF  P  D+SLI ELL+ +  V    +A + 
Sbjct: 8   PLFGGAFSAILPMGAIDVSDLRPVPDNQEVFCHPVTDQSLIVELLELQAHVRGEAAARYH 67

Query: 70  LQDLATEQDAEGCTLLE-QSGVVEAPGLRYKDLPATVTTAVGQMGRQGREAQNIVKVYLA 128
            +D+   Q A    +   Q   +E   LR +   A V +   Q+ ++ ++    V ++ A
Sbjct: 68  FEDVGGVQGARAVHVESVQPLSLENLALRGRCQEAWVLSGKQQIAKENQQVAKDVTLHQA 127

Query: 129 NLRLKEVGTDVLVTAYEPLLINPLSESASTVGAGL-PVPATQSGFMQMSEVFKLAVSSFK 187
            LRL +  TD+L+T  +P    P    +S     L P P +   F Q+       V+S  
Sbjct: 128 LLRLPQYQTDLLLTFNQP----PPDNRSSLGPENLSPAPWSLGDFEQL-------VTSLT 176

Query: 188 VNDWSLFG 195
           ++D ++FG
Sbjct: 177 LHDPNIFG 184

May regulate the intracellular trafficking of RAN. In cardiac cells seems to regulate the cell surface localization of SCN5A.

Homo sapiens (taxid: 9606)

>sp|O75002|MOG1_SCHPO Nuclear import protein mog1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mog1 PE=3 SV=1

 Score = 65.1 bits (157), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 92/191 (48%), Gaps = 10/191 (5%)

Query: 11  LFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRDE-SLIFELLDFKLDVGDNGSAAWF 69
           LFGGA+ + FP +F D S +RQ+PD+QEVF+  S++  ++I ELL+      D   AA+ 
Sbjct: 4   LFGGALCADFPPKFLDASVLRQIPDNQEVFLQDSKENLTVIIELLEKIEKPFDGSVAAYH 63

Query: 70  LQDLATEQDAEGCTLLEQSGVVEA--PGLRYKDLPATVTTA---VGQMGRQGREAQNIVK 124
              +A + DA    +     + E    G+R +    +       V + G++  E+   V 
Sbjct: 64  FNSIAFDNDASQRVIWRDKSLGEDDFEGMRSEKASGSSVQGCQRVLEKGKRNPESATNVA 123

Query: 125 VYLANLRLKEVGTDVLVTAYEPLLINPLSESASTVGAGLPVPATQSGFMQMSEVFKLAVS 184
           +++  + L +  TD++++   PL   P + S  +    +P P+ QS      E  +    
Sbjct: 124 IFVNVITLIDFQTDIVISVNAPL---PNTSSVPSSVENIP-PSDQSIVRAALETIQRVTR 179

Query: 185 SFKVNDWSLFG 195
           S  + D ++F 
Sbjct: 180 SLVLVDKTVFA 190

Involved in the Ran-GTPase system for nuclear protein import and poly(A)+ mRNA export. Required for mitosis-to-interphase transition.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P47123|MOG1_YEAST Nuclear import protein MOG1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MOG1 PE=1 SV=1

 Score = 58.2 bits (139), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 60/202 (29%), Positives = 95/202 (47%), Gaps = 30/202 (14%)

Query: 7   SERPLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRD-----------ESLIFELLD 55
            E  L+GGAI++  P  F D S +R+VPD QEV+V+  RD           ES+I +LL+
Sbjct: 34  KEVELYGGAITTVVPPGFIDASTLREVPDTQEVYVNSRRDEEEFEDGLATNESIIVDLLE 93

Query: 56  FKLDVGDNGSAAWF-LQDLATEQDAEGCTLLEQSGVVEAPGLRYKDLPATVTTAVGQMGR 114
             +D  D   A  F ++DL           L++  V +  G ++  L   V    G+   
Sbjct: 94  -TVDKSDLKEAWQFHVEDLTELNGTTKWEALQEDTVQQ--GTKFTGLVMEVANKWGKPDL 150

Query: 115 QGREAQNIVKVYLANLRLKEVGTDVLVTAYEPLLIN-PLSESASTVGAGLPVPATQSGFM 173
               AQ +V + +A +RL +  TDV+++      IN PL++  ++  +   +PA      
Sbjct: 151 ----AQTVV-IGVALIRLTQFDTDVVIS------INVPLTKEEASQASNKELPARCHAVY 199

Query: 174 QMSEVFKLAVSSFKVNDWSLFG 195
           Q+    +  V  F V D SLF 
Sbjct: 200 QL---LQEMVRKFHVVDTSLFA 218

Involved in the Ran-GTPase system for nuclear protein import and poly(A)+ mRNA export.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	200
255566403	203	Nuclear import protein mog1, putative [R	0.99	0.975	0.782	5e-89
449434790	202	PREDICTED: probable ran guanine nucleoti	0.99	0.980	0.772	3e-85
356499793	198	PREDICTED: ran guanine nucleotide releas	0.97	0.979	0.757	4e-82
357486819	402	Ran guanine nucleotide release factor [M	0.985	0.490	0.741	5e-82
359806063	198	uncharacterized protein LOC100786093 [Gl	0.97	0.979	0.757	9e-82
297838735	202	predicted protein [Arabidopsis lyrata su	0.99	0.980	0.732	4e-81
224123614	197	predicted protein [Populus trichocarpa]	0.96	0.974	0.753	1e-80
18409343	202	Mog1/PsbP/DUF1795-like photosystem II re	0.99	0.980	0.717	2e-79
297805022	184	hypothetical protein ARALYDRAFT_355491 [	0.9	0.978	0.733	1e-71
12325191	186	hypothetical protein; 65754-64334 [Arabi	0.93	1.0	0.681	2e-71

>gi|255566403|ref|XP_002524187.1| Nuclear import protein mog1, putative [Ricinus communis] gi|223536556|gb|EEF38202.1| Nuclear import protein mog1, putative [Ricinus communis]

 Score =  332 bits (851), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 158/202 (78%), Positives = 179/202 (88%), Gaps = 4/202 (1%)

Query: 1   MSGDLYSERPLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKLDV 60
           M  D Y+ERPLFGGAI++SFP RFQDVSNIRQVPDHQEVFVDP+RDESLIFELLDFK D+
Sbjct: 1   MPEDSYTERPLFGGAITTSFPLRFQDVSNIRQVPDHQEVFVDPARDESLIFELLDFKHDI 60

Query: 61  GDNGSAAWFLQDLATEQDAEGCTLLEQSGVVEAPGLRYKDLPATVTTAVGQM----GRQG 116
           GDNGSA WFLQDLA EQDAEGCTL+EQSGVVEAPGL Y+D P  V+TAVGQM    GRQG
Sbjct: 61  GDNGSATWFLQDLANEQDAEGCTLIEQSGVVEAPGLLYRDNPTVVSTAVGQMNISKGRQG 120

Query: 117 REAQNIVKVYLANLRLKEVGTDVLVTAYEPLLINPLSESASTVGAGLPVPATQSGFMQMS 176
           REAQN+V+VYLAN+RLK V +DVL+TAYEP+LI+PLSE+A TVGAG+ +PA QSGF+ MS
Sbjct: 121 REAQNVVRVYLANIRLKGVSSDVLITAYEPVLIHPLSETARTVGAGMAIPAAQSGFLPMS 180

Query: 177 EVFKLAVSSFKVNDWSLFGGTA 198
           EVFKLAVS+FKVNDW+LFG  A
Sbjct: 181 EVFKLAVSTFKVNDWNLFGSAA 202

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434790|ref|XP_004135179.1| PREDICTED: probable ran guanine nucleotide release factor-like [Cucumis sativus] gi|449478418|ref|XP_004155313.1| PREDICTED: probable ran guanine nucleotide release factor-like [Cucumis sativus]

 Score =  319 bits (818), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 156/202 (77%), Positives = 174/202 (86%), Gaps = 4/202 (1%)

Query: 1   MSGDLYSERPLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKLDV 60
           MS D  +ER LFGGAI S+FP RFQDVSN+RQVPDHQEVFVDPSRDESLIFELLDFK DV
Sbjct: 1   MSADFSTERALFGGAIVSTFPLRFQDVSNVRQVPDHQEVFVDPSRDESLIFELLDFKHDV 60

Query: 61  GDNGSAAWFLQDLATEQDAEGCTLLEQSGVVEAPGLRYKDLPATVTTAVGQM----GRQG 116
           GDNGSA WFLQDLATEQDAEG  ++EQSGV+EAP L Y ++P+  TTAVGQM    GRQG
Sbjct: 61  GDNGSAVWFLQDLATEQDAEGSVVIEQSGVIEAPELCYGNIPSVATTAVGQMAISKGRQG 120

Query: 117 REAQNIVKVYLANLRLKEVGTDVLVTAYEPLLINPLSESASTVGAGLPVPATQSGFMQMS 176
           REAQNIV+VYLANLRLK VGTDVL++AYEP++INPLSESAS+VG+GL  PA+ SG+M M 
Sbjct: 121 REAQNIVRVYLANLRLKGVGTDVLISAYEPIVINPLSESASSVGSGLATPASHSGYMPMP 180

Query: 177 EVFKLAVSSFKVNDWSLFGGTA 198
           EVFKLAVSSFKV DWSLFG  A
Sbjct: 181 EVFKLAVSSFKVCDWSLFGAPA 202

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499793|ref|XP_003518721.1| PREDICTED: ran guanine nucleotide release factor-like [Glycine max]

 Score =  309 bits (792), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 150/198 (75%), Positives = 167/198 (84%), Gaps = 4/198 (2%)

Query: 1   MSGDLYSERPLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKLDV 60
           M  D+  + PLFGG I+S+FPHRFQDVSNIRQVPDHQEVF DPS DESLIFELL+FK DV
Sbjct: 1   MPEDIVYQHPLFGGKIASTFPHRFQDVSNIRQVPDHQEVFADPSHDESLIFELLEFKPDV 60

Query: 61  GDNGSAAWFLQDLATEQDAEGCTLLEQSGVVEAPGLRYKDLPATVTTAVGQM----GRQG 116
            DNGSAAWFLQDLATEQDAEG  ++EQSGV+EAPGL YK++PA V TAVGQM    GRQG
Sbjct: 61  ADNGSAAWFLQDLATEQDAEGSVVIEQSGVLEAPGLMYKNMPAVVITAVGQMAISKGRQG 120

Query: 117 REAQNIVKVYLANLRLKEVGTDVLVTAYEPLLINPLSESASTVGAGLPVPATQSGFMQMS 176
           REAQN VKVYLANL LK V TDVLVTAYEP++INP SESA TVGAG+ VPA Q+G M M 
Sbjct: 121 REAQNFVKVYLANLHLKGVDTDVLVTAYEPIVINPFSESADTVGAGVAVPAAQAGCMPME 180

Query: 177 EVFKLAVSSFKVNDWSLF 194
           EVFKLAV+SF+V+DW LF
Sbjct: 181 EVFKLAVTSFRVHDWGLF 198

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357486819|ref|XP_003613697.1| Ran guanine nucleotide release factor [Medicago truncatula] gi|355515032|gb|AES96655.1| Ran guanine nucleotide release factor [Medicago truncatula]

 Score =  309 bits (791), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 149/201 (74%), Positives = 171/201 (85%), Gaps = 4/201 (1%)

Query: 1   MSGDLYSERPLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKLDV 60
           MS D+  +RPLFGG ISS+FP+RFQDVS+IRQVPDHQEVF DPSRDESLI ELL+FK D+
Sbjct: 200 MSQDVVYQRPLFGGKISSTFPNRFQDVSDIRQVPDHQEVFADPSRDESLIVELLEFKPDI 259

Query: 61  GDNGSAAWFLQDLATEQDAEGCTLLEQSGVVEAPGLRYKDLPATVTTAVGQM----GRQG 116
            D+GSAAWFLQDLA EQDAEG  ++EQSGV+EAPGL Y ++PA VTTAVGQM    GRQG
Sbjct: 260 ADDGSAAWFLQDLAREQDAEGTVVIEQSGVLEAPGLMYNNIPAVVTTAVGQMAISKGRQG 319

Query: 117 REAQNIVKVYLANLRLKEVGTDVLVTAYEPLLINPLSESASTVGAGLPVPATQSGFMQMS 176
           REAQNIVKVYLANLR+K V TDVL+TAYEP++INP SESA TVGAG+ VPA+Q+G M M 
Sbjct: 320 REAQNIVKVYLANLRVKGVDTDVLITAYEPIVINPFSESADTVGAGMAVPASQAGCMSMD 379

Query: 177 EVFKLAVSSFKVNDWSLFGGT 197
           EVFKLA +SFKV DWSLF  +
Sbjct: 380 EVFKLAATSFKVYDWSLFDAS 400

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806063|ref|NP_001241181.1| uncharacterized protein LOC100786093 [Glycine max] gi|255642279|gb|ACU21404.1| unknown [Glycine max]

 Score =  308 bits (789), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 150/198 (75%), Positives = 169/198 (85%), Gaps = 4/198 (2%)

Query: 1   MSGDLYSERPLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKLDV 60
           M  D+  + PLFGG ISS+FPHRFQDVS+IRQVPDHQEVF DPSRDESLIFELL+FK DV
Sbjct: 1   MPEDIVYQHPLFGGKISSTFPHRFQDVSSIRQVPDHQEVFADPSRDESLIFELLEFKPDV 60

Query: 61  GDNGSAAWFLQDLATEQDAEGCTLLEQSGVVEAPGLRYKDLPATVTTAVGQM----GRQG 116
            DNGSA WFLQDLA+EQDAEG  ++EQSGV+EAPGL Y + PA VTTAVGQM    GRQG
Sbjct: 61  ADNGSAGWFLQDLASEQDAEGSVVIEQSGVLEAPGLMYNNTPAVVTTAVGQMAISKGRQG 120

Query: 117 REAQNIVKVYLANLRLKEVGTDVLVTAYEPLLINPLSESASTVGAGLPVPATQSGFMQMS 176
           REAQNIVKVYLANLRL+ V TDVLV+AYEP++INPLSESA TVGAG+ VPA Q+G M M 
Sbjct: 121 REAQNIVKVYLANLRLRGVDTDVLVSAYEPIVINPLSESADTVGAGVAVPAAQAGCMPMD 180

Query: 177 EVFKLAVSSFKVNDWSLF 194
           EVFKLAV+SF+V+DW LF
Sbjct: 181 EVFKLAVTSFRVHDWGLF 198

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297838735|ref|XP_002887249.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297333090|gb|EFH63508.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  306 bits (783), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 148/202 (73%), Positives = 173/202 (85%), Gaps = 4/202 (1%)

Query: 1   MSGDLYSERPLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKLDV 60
           MSG+L S RPLFGGAIS+ FP RFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFK +V
Sbjct: 1   MSGELCSVRPLFGGAISTVFPQRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKTEV 60

Query: 61  GDNGSAAWFLQDLATEQDAEGCTLLEQSGVVEAPGLRYKDLPATVTTAVGQM----GRQG 116
           GD GSA+WFL DLA EQDAEG  L+EQS V+EAPGL ++++PA  TTA+G+M    GRQG
Sbjct: 61  GDIGSASWFLNDLAREQDAEGFQLIEQSEVIEAPGLSFRNIPAIATTAIGEMAISKGRQG 120

Query: 117 REAQNIVKVYLANLRLKEVGTDVLVTAYEPLLINPLSESASTVGAGLPVPATQSGFMQMS 176
           REAQN+V+VY+ANLRLK V TDVLVTAYEP+LINPLS+SA  VG+GL VPA+QSG M M 
Sbjct: 121 REAQNLVRVYVANLRLKGVDTDVLVTAYEPILINPLSKSADAVGSGLAVPASQSGIMPMC 180

Query: 177 EVFKLAVSSFKVNDWSLFGGTA 198
           +V K ++S+FKVNDW+LFG +A
Sbjct: 181 DVIKQSLSTFKVNDWNLFGSSA 202

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123614|ref|XP_002319123.1| predicted protein [Populus trichocarpa] gi|118483128|gb|ABK93471.1| unknown [Populus trichocarpa] gi|222857499|gb|EEE95046.1| predicted protein [Populus trichocarpa]

 Score =  304 bits (778), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 150/199 (75%), Positives = 170/199 (85%), Gaps = 7/199 (3%)

Query: 1   MSGDLYSERPLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKLDV 60
           M  D+ ++RPL+GG+ISS+FP RFQDVSNIRQVPDHQE FVDPSRDESLIFELLD K DV
Sbjct: 1   MPEDICTDRPLYGGSISSTFPVRFQDVSNIRQVPDHQEAFVDPSRDESLIFELLDLKPDV 60

Query: 61  GDNGSAAWFLQDLATEQDAEGCTLLEQSGVVEAPGLRYKDLPATVTTAVGQMG----RQG 116
            DNGSA WFLQDLA EQDA+G TL+EQSGVVE P     ++   VTTA+GQMG    RQG
Sbjct: 61  NDNGSAVWFLQDLANEQDAQGFTLVEQSGVVEVP---IGNVSVVVTTAIGQMGISKARQG 117

Query: 117 REAQNIVKVYLANLRLKEVGTDVLVTAYEPLLINPLSESASTVGAGLPVPATQSGFMQMS 176
           REAQN+V+VYLANLRLK VGTDVLV AYEP+LI+PLSESA+TVGAGLP PA QSGF+ M+
Sbjct: 118 REAQNVVQVYLANLRLKNVGTDVLVVAYEPILISPLSESAATVGAGLPAPAAQSGFLPMA 177

Query: 177 EVFKLAVSSFKVNDWSLFG 195
           EVFKLAVS+FKVNDW+LFG
Sbjct: 178 EVFKLAVSNFKVNDWNLFG 196

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18409343|ref|NP_564972.1| Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP-like protein [Arabidopsis thaliana] gi|14335134|gb|AAK59847.1| At1g69680/T6C23_12 [Arabidopsis thaliana] gi|18655341|gb|AAL76126.1| At1g69680/T6C23_12 [Arabidopsis thaliana] gi|21593600|gb|AAM65567.1| unknown [Arabidopsis thaliana] gi|332196841|gb|AEE34962.1| Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP-like protein [Arabidopsis thaliana]

 Score =  300 bits (768), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 145/202 (71%), Positives = 172/202 (85%), Gaps = 4/202 (1%)

Query: 1   MSGDLYSERPLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKLDV 60
           MS +L S RPLFGGAIS+ FP RFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFK +V
Sbjct: 1   MSVELCSVRPLFGGAISTVFPQRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKAEV 60

Query: 61  GDNGSAAWFLQDLATEQDAEGCTLLEQSGVVEAPGLRYKDLPATVTTAVGQM----GRQG 116
           GD GSA+WFL DLA+EQDAEG  L+EQS V+EAPGL ++++ A  TTA+G+M    GRQG
Sbjct: 61  GDIGSASWFLNDLASEQDAEGFQLIEQSEVIEAPGLSFRNISAVATTAIGEMAISKGRQG 120

Query: 117 REAQNIVKVYLANLRLKEVGTDVLVTAYEPLLINPLSESASTVGAGLPVPATQSGFMQMS 176
           REAQN+V+VY+AN+RLK V TDVLVTAYEP+LINPLSESA  VG+GL VPA+QSG M M 
Sbjct: 121 REAQNLVRVYVANIRLKGVDTDVLVTAYEPILINPLSESADAVGSGLAVPASQSGKMPMC 180

Query: 177 EVFKLAVSSFKVNDWSLFGGTA 198
           ++ K ++S+FKVNDW+LFG +A
Sbjct: 181 DIIKQSLSTFKVNDWNLFGSSA 202

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297805022|ref|XP_002870395.1| hypothetical protein ARALYDRAFT_355491 [Arabidopsis lyrata subsp. lyrata] gi|297316231|gb|EFH46654.1| hypothetical protein ARALYDRAFT_355491 [Arabidopsis lyrata subsp. lyrata]

 Score =  274 bits (701), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 135/184 (73%), Positives = 155/184 (84%), Gaps = 4/184 (2%)

Query: 1   MSGDLYSERPLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKLDV 60
           MSG+L S RPLFGGAIS+ FP RFQDVSNIRQV DHQEVFVDPSRDESLIFELLDFK +V
Sbjct: 1   MSGELCSVRPLFGGAISTFFPQRFQDVSNIRQVSDHQEVFVDPSRDESLIFELLDFKTEV 60

Query: 61  GDNGSAAWFLQDLATEQDAEGCTLLEQSGVVEAPGLRYKDLPATVTTAVGQM----GRQG 116
           GD GSA+WFL DLA EQDAEG  L+EQS V+EAPGL ++++PA  TTA+G+M    GRQG
Sbjct: 61  GDIGSASWFLNDLAREQDAEGFLLIEQSEVIEAPGLSFRNIPAIGTTAIGEMAISKGRQG 120

Query: 117 REAQNIVKVYLANLRLKEVGTDVLVTAYEPLLINPLSESASTVGAGLPVPATQSGFMQMS 176
           REAQN+V+VY+ANLRLK + TDVLVTAYEP+LINPLSES   VG+GL VPA+QSG M M 
Sbjct: 121 REAQNLVRVYVANLRLKGIDTDVLVTAYEPILINPLSESVDAVGSGLVVPASQSGIMPMC 180

Query: 177 EVFK 180
           +V K
Sbjct: 181 DVIK 184

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|12325191|gb|AAG52542.1|AC013289_9 hypothetical protein; 65754-64334 [Arabidopsis thaliana]

 Score =  274 bits (700), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 135/198 (68%), Positives = 160/198 (80%), Gaps = 12/198 (6%)

Query: 1   MSGDLYSERPLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKLDV 60
           MS +L S RPLFGGAIS+ FP RFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFK +V
Sbjct: 1   MSVELCSVRPLFGGAISTVFPQRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKAEV 60

Query: 61  GDNGSAAWFLQDLATEQDAEGCTLLEQSGVVEAPGLRYKDLPATVTTAVGQMGRQGREAQ 120
           GD GSA+WFL DLA+EQDAEG  L+EQS V+EAPGL ++++ A  TTA+G+M        
Sbjct: 61  GDIGSASWFLNDLASEQDAEGFQLIEQSEVIEAPGLSFRNISAVATTAIGEM-------- 112

Query: 121 NIVKVYLANLRLKEVGTDVLVTAYEPLLINPLSESASTVGAGLPVPATQSGFMQMSEVFK 180
               VY+AN+RLK V TDVLVTAYEP+LINPLSESA  VG+GL VPA+QSG M M ++ K
Sbjct: 113 ----VYVANIRLKGVDTDVLVTAYEPILINPLSESADAVGSGLAVPASQSGKMPMCDIIK 168

Query: 181 LAVSSFKVNDWSLFGGTA 198
            ++S+FKVNDW+LFG +A
Sbjct: 169 QSLSTFKVNDWNLFGSSA 186

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	200
TAIR|locus:2205070	202	AT1G69680 "AT1G69680" [Arabido	0.99	0.980	0.717	3.6e-73
DICTYBASE|DDB_G0285871	195	DDB_G0285871 "Ran GTPase bindi	0.93	0.953	0.307	1.2e-19
UNIPROTKB|Q32PE2	186	RANGRF "Ran guanine nucleotide	0.885	0.951	0.326	6.7e-17
UNIPROTKB|F1MW14	186	RANGRF "Ran guanine nucleotide	0.875	0.940	0.329	1.4e-16
UNIPROTKB|E2QYN1	194	RANGRF "Uncharacterized protei	0.88	0.907	0.336	1.3e-15
UNIPROTKB|Q9HD47	186	RANGRF "Ran guanine nucleotide	0.88	0.946	0.326	1.3e-15
MGI|MGI:1889073	185	Rangrf "RAN guanine nucleotide	0.87	0.940	0.335	1.6e-15
UNIPROTKB|I3LP92	182	RANGRF "Uncharacterized protei	0.86	0.945	0.315	1.4e-14
POMBASE|SPCC1840.01c	190	mog1 "Ran GTPase binding prote	0.895	0.942	0.277	4.4e-13
SGD|S000003835	218	MOG1 "Conserved nuclear protei	0.84	0.770	0.321	9e-09

TAIR|locus:2205070 AT1G69680 "AT1G69680" [Arabidopsis thaliana (taxid:3702)]

 Score = 739 (265.2 bits), Expect = 3.6e-73, P = 3.6e-73
 Identities = 145/202 (71%), Positives = 172/202 (85%)

Query:     1 MSGDLYSERPLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKLDV 60
             MS +L S RPLFGGAIS+ FP RFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFK +V
Sbjct:     1 MSVELCSVRPLFGGAISTVFPQRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKAEV 60

Query:    61 GDNGSAAWFLQDLATEQDAEGCTLLEQSGVVEAPGLRYKDLPATVTTAVGQM----GRQG 116
             GD GSA+WFL DLA+EQDAEG  L+EQS V+EAPGL ++++ A  TTA+G+M    GRQG
Sbjct:    61 GDIGSASWFLNDLASEQDAEGFQLIEQSEVIEAPGLSFRNISAVATTAIGEMAISKGRQG 120

Query:   117 REAQNIVKVYLANLRLKEVGTDVLVTAYEPLLINPLSESASTVGAGLPVPATQSGFMQMS 176
             REAQN+V+VY+AN+RLK V TDVLVTAYEP+LINPLSESA  VG+GL VPA+QSG M M 
Sbjct:   121 REAQNLVRVYVANIRLKGVDTDVLVTAYEPILINPLSESADAVGSGLAVPASQSGKMPMC 180

Query:   177 EVFKLAVSSFKVNDWSLFGGTA 198
             ++ K ++S+FKVNDW+LFG +A
Sbjct:   181 DIIKQSLSTFKVNDWNLFGSSA 202

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0285871 DDB_G0285871 "Ran GTPase binding protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
 Identities = 60/195 (30%), Positives = 102/195 (52%)

Query:     4 DLYSERPLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKLDVGDN 63
             + + +R L+GGAI    P RF DV++ R +PDHQE+F D   D+S+I EL +F+ D   N
Sbjct:     3 ETFEKRQLYGGAIEIDIPRRFIDVTSYRHIPDHQELFSDEKSDQSVIIELNEFQ-DHISN 61

Query:    64 GSAAWFLQDLATEQ---DAEGCTLLEQSGVVEAPGLRYK-DLPATVTTAVGQMGRQGREA 119
              +A     ++  E      +   +L    + +A    +   +P  V  A  ++ +    A
Sbjct:    62 ANAIKHHYEVLVEDAGISTDKSVILNFRELTQAEMPNFDASIPKYVLLAQQKIAKFNETA 121

Query:   120 QNIVKVYLANLRLKEVGTDVLVTAYEPLLINPLSESASTVGAGLPVPATQSGFMQMSEVF 179
             +N + +Y+A +RL++  TD+L+T  E + + P S S + V   L     QS   +  ++F
Sbjct:   122 ENTINIYMALVRLEKSKTDLLITFNEAIALAPTSSSVAVV-QNLTPSNDQS---KSEQLF 177

Query:   180 KLAVSSFKVNDWSLF 194
                + SFK+ D+SLF
Sbjct:   178 LTMLKSFKIKDYSLF 192

GO:0008536 "Ran GTPase binding" evidence=ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0015031 "protein transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=IEA

UNIPROTKB|Q32PE2 RANGRF "Ran guanine nucleotide release factor" [Bos taurus (taxid:9913)]

 Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
 Identities = 62/190 (32%), Positives = 100/190 (52%)

Query:     8 ERPLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKLDVGDNGSAA 67
             + PLFGGA S++ P    DVS++R VPDHQEVF     D+SLI ELL+ +  V    +A 
Sbjct:     6 DNPLFGGAFSATLPPGAIDVSDLRPVPDHQEVFCHRVTDQSLIVELLELQAHVQGEEAAR 65

Query:    68 WFLQDLATEQDAEGCTL-LEQSGVVEAPGLRYKDLPATVTTAVGQMGRQGREAQNIVKVY 126
             +  +D+   Q+A    +   Q  V+E   LR     A + +   Q+ ++ ++    V ++
Sbjct:    66 YHFEDVGGVQEARAVQVETVQPLVLEKLALRGCCQEAWILSGQQQVAKENQQVAKYVTLH 125

Query:   127 LANLRLKEVGTDVLVTAYEPLLINPLSESASTVGA-GLPVPATQSGFMQMSEVFKLAVSS 185
              A LRL +  TD+L+T  +P    P  E+ S++G   L +P    G       F+  V+S
Sbjct:   126 QALLRLPQYQTDLLLTFNQP----P-PENRSSLGPENLSIPPWSLGD------FEQLVTS 174

Query:   186 FKVNDWSLFG 195
               ++D ++FG
Sbjct:   175 LTLHDPNIFG 184

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=IEA

UNIPROTKB|F1MW14 RANGRF "Ran guanine nucleotide release factor" [Bos taurus (taxid:9913)]

 Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
 Identities = 62/188 (32%), Positives = 99/188 (52%)

Query:    10 PLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKLDVGDNGSAAWF 69
             PLFGGA S++ P    DVS++R VPDHQEVF     D+SLI ELL+ +  V    +A + 
Sbjct:     8 PLFGGAFSATLPPGAIDVSDLRPVPDHQEVFCHRVTDQSLIVELLELQAHVQGEEAARYH 67

Query:    70 LQDLATEQDAEGCTL-LEQSGVVEAPGLRYKDLPATVTTAVGQMGRQGREAQNIVKVYLA 128
              +D+   Q+A    +   Q  V+E   LR     A + +   Q+ ++ ++    V ++ A
Sbjct:    68 FEDVGGVQEARAVQVETVQPLVLENLALRGCCQEAWILSGQQQVAKENQQVAKYVTLHQA 127

Query:   129 NLRLKEVGTDVLVTAYEPLLINPLSESASTVGA-GLPVPATQSGFMQMSEVFKLAVSSFK 187
              LRL +  TD+L+T  +P    P  E+ S++G   L +P    G       F+  V+S  
Sbjct:   128 LLRLPQYQTDLLLTFNQP----P-PENRSSLGPENLSIPPWSLGD------FEQLVTSLT 176

Query:   188 VNDWSLFG 195
             ++D ++FG
Sbjct:   177 LHDPNIFG 184

GO:2000649 "regulation of sodium ion transmembrane transporter activity" evidence=IEA

GO:2000010 "positive regulation of protein localization to cell surface" evidence=IEA

GO:0044325 "ion channel binding" evidence=IEA

GO:0042391 "regulation of membrane potential" evidence=IEA

GO:0017080 "sodium channel regulator activity" evidence=IEA

UNIPROTKB|E2QYN1 RANGRF "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 63/187 (33%), Positives = 93/187 (49%)

Query:    10 PLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKLDVGDNGSAAWF 69
             PLFGGA S++ P    DVS++R VPD+QEVF     D+SLI ELL+ +  V    +A + 
Sbjct:    16 PLFGGAFSATLPPGALDVSDLRPVPDNQEVFCHRVTDQSLIVELLELQAHVQGEEAARYH 75

Query:    70 LQDLATEQDAEGCTLLE-QSGVVEAPGLRYKDLPATVTTAVGQMGRQGREAQNIVKVYLA 128
              +D+   Q+A    +   Q  + E   LR     A V +   Q+ ++  +    V V+ A
Sbjct:    76 FEDVGGMQEARALQVDSVQPLLSENLALRSYCQEAWVLSGKQQVAKENHQVAKDVMVHQA 135

Query:   129 NLRLKEVGTDVLVTAYEPLLINPLSESASTVGAGLPVPATQSGFMQMSEVFKLAVSSFKV 188
              LRL    TDVLVT  EP   N LS     +     +P +   F Q+       V+S  +
Sbjct:   136 LLRLPRYQTDVLVTFNEPPPDNRLSLGPENLSL---LPWSLGDFEQL-------VTSLTL 185

Query:   189 NDWSLFG 195
             +D ++FG
Sbjct:   186 HDPNIFG 192

GO:2000649 "regulation of sodium ion transmembrane transporter activity" evidence=IEA

GO:2000010 "positive regulation of protein localization to cell surface" evidence=IEA

GO:0044325 "ion channel binding" evidence=IEA

GO:0042391 "regulation of membrane potential" evidence=IEA

GO:0017080 "sodium channel regulator activity" evidence=IEA

UNIPROTKB|Q9HD47 RANGRF "Ran guanine nucleotide release factor" [Homo sapiens (taxid:9606)]

 Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 61/187 (32%), Positives = 99/187 (52%)

Query:    10 PLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKLDVGDNGSAAWF 69
             PLFGGA S+  P    DVS++R VPD+QEVF  P  D+SLI ELL+ +  V    +A + 
Sbjct:     8 PLFGGAFSAILPMGAIDVSDLRPVPDNQEVFCHPVTDQSLIVELLELQAHVRGEAAARYH 67

Query:    70 LQDLATEQDAEGCTLLE-QSGVVEAPGLRYKDLPATVTTAVGQMGRQGREAQNIVKVYLA 128
              +D+   Q A    +   Q   +E   LR +   A V +   Q+ ++ ++    V ++ A
Sbjct:    68 FEDVGGVQGARAVHVESVQPLSLENLALRGRCQEAWVLSGKQQIAKENQQVAKDVTLHQA 127

Query:   129 NLRLKEVGTDVLVTAYEPLLINPLSESASTVGAGLPVPATQSGFMQMSEVFKLAVSSFKV 188
              LRL +  TD+L+T  +P    P  ++ S++G     PA  S    + + F+  V+S  +
Sbjct:   128 LLRLPQYQTDLLLTFNQP----P-PDNRSSLGPENLSPAPWS----LGD-FEQLVTSLTL 177

Query:   189 NDWSLFG 195
             +D ++FG
Sbjct:   178 HDPNIFG 184

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0044325 "ion channel binding" evidence=IPI

GO:2000649 "regulation of sodium ion transmembrane transporter activity" evidence=IDA

GO:0017080 "sodium channel regulator activity" evidence=IDA

GO:0042391 "regulation of membrane potential" evidence=IDA

GO:2000010 "positive regulation of protein localization to cell surface" evidence=IDA

GO:0014704 "intercalated disc" evidence=ISS

MGI|MGI:1889073 Rangrf "RAN guanine nucleotide release factor" [Mus musculus (taxid:10090)]

 Score = 195 (73.7 bits), Expect = 1.6e-15, P = 1.6e-15
 Identities = 63/188 (33%), Positives = 94/188 (50%)

Query:    10 PLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKLDVGDNGSAAWF 69
             PLFGGA S+  P    DVS++R VPD+QEVF  P  D+SLI ELL+ +  V    +A + 
Sbjct:     8 PLFGGAFSAILPTGAIDVSDLRPVPDNQEVFCHPVTDQSLIIELLELQAHVQGEAAARYH 67

Query:    70 LQDLATEQDAEGCTLLE-QSGVVEAPGLRYKDLPATVTTAVGQMGRQGREAQNIVKVYLA 128
              +D+   Q A    +L  Q   +E   LR     A   +   Q+ ++ ++    V ++ A
Sbjct:    68 FEDVGRVQGARAVHVLSVQPLCLENLSLRGCCQDAWSLSGKQQVAKENQQVAKDVTLHQA 127

Query:   129 NLRLKEVGTDVLVTAYEPLLINPL-SESASTVGAGLPVPATQSGFMQMSEVFKLAVSSFK 187
              LRL +  TD+L+T  +P    P  S S        P P + S F Q+       V+S  
Sbjct:   128 LLRLPQYQTDLLLTFNQP----PCHSRSLGPENLSCP-PWSLSNFEQL-------VTSLT 175

Query:   188 VNDWSLFG 195
             ++D +LFG
Sbjct:   176 LHDPNLFG 183

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=IDA

GO:0005634 "nucleus" evidence=IEA

GO:0005654 "nucleoplasm" evidence=IDA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006913 "nucleocytoplasmic transport" evidence=TAS

GO:0008536 "Ran GTPase binding" evidence=IDA

GO:0014704 "intercalated disc" evidence=IDA

GO:0015031 "protein transport" evidence=IEA

GO:0017080 "sodium channel regulator activity" evidence=ISO

GO:0042391 "regulation of membrane potential" evidence=ISO

GO:0044325 "ion channel binding" evidence=ISO;IPI

GO:0050790 "regulation of catalytic activity" evidence=IDA

GO:2000010 "positive regulation of protein localization to cell surface" evidence=ISO

GO:2000649 "regulation of sodium ion transmembrane transporter activity" evidence=ISO

UNIPROTKB|I3LP92 RANGRF "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
 Identities = 59/187 (31%), Positives = 96/187 (51%)

Query:    10 PLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKLDVGDNGSAAWF 69
             PLFGGA S++ P    DVS++R VPD+QEVF     D+SLI ELL+ +  V    +A + 
Sbjct:     8 PLFGGAFSATLPPGAIDVSDLRPVPDNQEVFCHRETDQSLIVELLELQAHVQGEEAARYH 67

Query:    70 LQDLATEQDAEGCTL-LEQSGVVEAPGLRYKDLPATVTTAVGQMGRQGREAQNIVKVYLA 128
              +D+   Q+A    +   Q  ++E   LR     A + +   Q+ ++ ++    V ++ A
Sbjct:    68 FEDVGGVQEARAVQVEAVQPLLLENLALRGCCQEAWILSGKQQVAKENQQVAKCVTLHQA 127

Query:   129 NLRLKEVGTDVLVTAYEPLLINPLSESASTVGAGLPVPATQSGFMQMSEVFKLAVSSFKV 188
              LRL +  TD+L+T  +P    P S     +   LP P +   F Q+       V+S  +
Sbjct:   128 LLRLPQYQTDLLLTFNQP----PSSLGPENLS--LP-PWSLGDFEQL-------VTSLTL 173

Query:   189 NDWSLFG 195
             +D ++FG
Sbjct:   174 HDPNIFG 180

GO:2000649 "regulation of sodium ion transmembrane transporter activity" evidence=IEA

GO:2000010 "positive regulation of protein localization to cell surface" evidence=IEA

GO:0044325 "ion channel binding" evidence=IEA

GO:0042391 "regulation of membrane potential" evidence=IEA

GO:0017080 "sodium channel regulator activity" evidence=IEA

POMBASE|SPCC1840.01c mog1 "Ran GTPase binding protein Mog1" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
 Identities = 53/191 (27%), Positives = 97/191 (50%)

Query:    11 LFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRDE-SLIFELLDFKLDVGDNGS-AAW 68
             LFGGA+ + FP +F D S +RQ+PD+QEVF+  S++  ++I ELL+ K++   +GS AA+
Sbjct:     4 LFGGALCADFPPKFLDASVLRQIPDNQEVFLQDSKENLTVIIELLE-KIEKPFDGSVAAY 62

Query:    69 FLQDLATEQDAEGCTLLEQSGVVEAP--GLRYKDLPATVTTA---VGQMGRQGREAQNIV 123
                 +A + DA    +     + E    G+R +    +       V + G++  E+   V
Sbjct:    63 HFNSIAFDNDASQRVIWRDKSLGEDDFEGMRSEKASGSSVQGCQRVLEKGKRNPESATNV 122

Query:   124 KVYLANLRLKEVGTDVLVTAYEPLLINPLSESASTVGAGLPVPATQSGFMQMSEVFKLAV 183
              +++  + L +  TD++++   PL   P + S  +    +P P+ QS      E  +   
Sbjct:   123 AIFVNVITLIDFQTDIVISVNAPL---PNTSSVPSSVENIP-PSDQSIVRAALETIQRVT 178

Query:   184 SSFKVNDWSLF 194
              S  + D ++F
Sbjct:   179 RSLVLVDKTVF 189

GO:0000216 "M/G1 transition of mitotic cell cycle" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006606 "protein import into nucleus" evidence=ISO

GO:0007264 "small GTPase mediated signal transduction" evidence=IGI

GO:0008536 "Ran GTPase binding" evidence=ISO

GO:0016973 "poly(A)+ mRNA export from nucleus" evidence=IMP

SGD|S000003835 MOG1 "Conserved nuclear protein that interacts with GTP-Gsp1p" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 140 (54.3 bits), Expect = 9.0e-09, P = 9.0e-09
 Identities = 65/202 (32%), Positives = 100/202 (49%)

Query:     8 ERPLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRDE-----------SLIFELLDF 56
             E  L+GGAI++  P  F D S +R+VPD QEV+V+  RDE           S+I +LL+ 
Sbjct:    35 EVELYGGAITTVVPPGFIDASTLREVPDTQEVYVNSRRDEEEFEDGLATNESIIVDLLE- 93

Query:    57 KLDVGDNGSAAWF-LQDLATEQDAEGCTLLE--QSGVVEAPGLRYKDLPATVTTAVGQMG 113
              +D  D   A  F ++DL TE +  G T  E  Q   V+  G ++  L   V     + G
Sbjct:    94 TVDKSDLKEAWQFHVEDL-TELN--GTTKWEALQEDTVQQ-GTKFTGL---VMEVANKWG 146

Query:   114 RQGREAQNIVKVYLANLRLKEVGTDVLVTAYEPLLIN-PLSESASTVGAGLPVPATQSGF 172
             +    AQ +V + +A +RL +  TDV+++      IN PL++  ++  +   +PA     
Sbjct:   147 KPDL-AQTVV-IGVALIRLTQFDTDVVIS------INVPLTKEEASQASNKELPARCHAV 198

Query:   173 MQMSEVFKLAVSSFKVNDWSLF 194
              Q+ +     V  F V D SLF
Sbjct:   199 YQLLQEM---VRKFHVVDTSLF 217

GO:0006606 "protein import into nucleus" evidence=IMP

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0008536 "Ran GTPase binding" evidence=IPI

GO:0051028 "mRNA transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9HD47	MOG1_HUMAN	No assigned EC number	0.3244	0.875	0.9408	yes	no
Q9JIB0	MOG1_MOUSE	No assigned EC number	0.3315	0.875	0.9459	yes	no
Q32PE2	MOG1_BOVIN	No assigned EC number	0.3174	0.89	0.9569	yes	no
Q54ML6	MOG1_DICDI	No assigned EC number	0.3010	0.935	0.9589	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00130496 SubName- Full=Putative uncharacterized protein; (198 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	200
cd00224	173	cd00224, Mog1, homolog to Ran-Binding Protein Mog1	3e-54
pfam04603	141	pfam04603, Mog1, Ran-interacting Mog1 protein	2e-28

>gnl|CDD|238137 cd00224, Mog1, homolog to Ran-Binding Protein Mog1p; binds to the small GTPase Ran, which plays an important role in nuclear import

 Score =  170 bits (432), Expect = 3e-54
 Identities = 67/188 (35%), Positives = 101/188 (53%), Gaps = 16/188 (8%)

Query: 9   RPLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKLDVGDNGSAAW 68
            PLFGGA S+  P  F DVS++R VPD+QEVF  PS D+SLI ELL+ +  V D  +A +
Sbjct: 1   CPLFGGAFSAILPPGFIDVSDLRPVPDNQEVFCHPSTDQSLIVELLELQAHVRDEEAARY 60

Query: 69  FLQDLATEQDAEGCTLLEQSGVVEAPGLRYKDLPATVTTAVGQMGRQG-REAQNIVKVYL 127
             +DLA+  DAEG   +     +   G       A + +     G+Q  +E    V +++
Sbjct: 61  HFEDLASVNDAEG-VEVLSVQPLSLEGTSLTGCCAWLLS-----GKQENQEVAKDVTIHV 114

Query: 128 ANLRLKEVGTDVLVTAYEPLLINPLSESASTVGAGLPVPATQSGFMQMSEVFKLAVSSFK 187
           A +RL +  TD+L+T  +P       +S S+VG+ L  PA+          F+  V+S  
Sbjct: 115 ALIRLPQYQTDLLLTFNQPPP-----DSRSSVGSNLLSPAS----CWSLGDFEQLVTSLT 165

Query: 188 VNDWSLFG 195
           ++D +LFG
Sbjct: 166 LHDPNLFG 173

Binding is independent of Ran's nucleotide state (RanGTP/RanGDP). Length = 173

>gnl|CDD|146982 pfam04603, Mog1, Ran-interacting Mog1 protein

 Score =  103 bits (258), Expect = 2e-28
 Identities = 49/140 (35%), Positives = 82/140 (58%), Gaps = 1/140 (0%)

Query: 9   RPLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKLDVGDNGSAAW 68
            PLFGGA+S+  P +F DVS +RQ+PD+QEVF+  S D+S+I ELL+ +  V D  +A +
Sbjct: 2   VPLFGGALSAILPPKFLDVSVLRQIPDNQEVFLHDSTDQSVIVELLEKQEKVFDGSAARY 61

Query: 69  FLQDLATEQDAEGCTLLE-QSGVVEAPGLRYKDLPATVTTAVGQMGRQGREAQNIVKVYL 127
             +D+A + DA    +   +   ++  GLR +   A       ++ ++  E+   V +++
Sbjct: 62  HFEDVAFDNDASQRVVWSVKPLGLDDLGLRSECASAWSLQGCQRVAKRNPESATNVAIHV 121

Query: 128 ANLRLKEVGTDVLVTAYEPL 147
           A +RL +  TD+L+T   PL
Sbjct: 122 ALIRLPQFQTDLLITFNAPL 141

Segregation of nuclear and cytoplasmic processes facilitates regulation of many eukaryotic cellular functions such as gene expression and cell cycle progression. Trafficking through the nuclear pore requires a number of highly conserved soluble factors that escort macromolecular substrates into and out of the nucleus. The Mog1 protein has been shown to interact with RanGTP which stimulates guanine nucleotide release, suggesting Mog1 regulates the nuclear transport functions of Ran. The human homologue of Mog1 is thought to be alternatively spliced. Length = 141

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	200
cd00224	173	Mog1 homolog to Ran-Binding Protein Mog1p; binds t	100.0
PF04603	141	Mog1: Ran-interacting Mog1 protein; InterPro: IPR0	100.0
KOG3329	185	consensus RAN guanine nucleotide release factor [S	100.0

>cd00224 Mog1 homolog to Ran-Binding Protein Mog1p; binds to the small GTPase Ran, which plays an important role in nuclear import

Probab=100.00  E-value=6e-60  Score=386.69  Aligned_cols=173  Identities=36%  Similarity=0.482  Sum_probs=138.7

Q ss_pred             cccccceeEeeCCCCCccccCccccCCcceEeecCCCCceEEEEeeccccCCCchhHHHHHHHhhhcccCCCCceEEeec
Q 029036            9 RPLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKLDVGDNGSAAWFLQDLATEQDAEGCTLLEQS   88 (200)
Q Consensus         9 ~~LyGGAIt~~lP~~fiDvS~lRqVPDnQEVFv~~~~d~SiIvElLE~v~~~~d~~A~~~Hf~Dla~~N~a~~~~~i~~~   88 (200)
                      ++||||||++.||++|+|+|+|||||||||||+++++|+|||||||||+++++|.+|++|||+|||++|++.+ ..+++.
T Consensus         1 ~~LfGGAI~~~lP~~f~DvS~lRqVPDnQEVF~~~~~d~SiIiElLe~~~~~~d~~a~~~h~~dla~~n~~~~-~~v~~~   79 (173)
T cd00224           1 CPLFGGAFSAILPPGFIDVSDLRPVPDNQEVFCHPSTDQSLIVELLELQAHVRDEEAARYHFEDLASVNDAEG-VEVLSV   79 (173)
T ss_pred             CCccCceEEEeCCCcccchhcceeCCCCcEEEEcCCCCeEEEEEeeccccCCChHHHHHHHHHHHhccccCcc-eEEeec
Confidence            6899999999999999999999999999999999999999999999999999999999999999999999876 556676


Q ss_pred             eeeccCCCCCCCCCceEEEEEeeecccCccccceEEEEEEEEEcCCCCeeEEEEEeccCcCCCCcccccccCCCCCCCcc
Q 029036           89 GVVEAPGLRYKDLPATVTTAVGQMGRQGREAQNIVKVYLANLRLKEVGTDVLVTAYEPLLINPLSESASTVGAGLPVPAT  168 (200)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~g~~~k~~~~~~~~V~i~l~liRL~~~~TDilIt~NvP~~~~~~s~~~~~~~~~~~~~~~  168 (200)
                      .+++....+....  ..+.+.|+|+++  +++++|.||||||||++++||||||+|+|+.   .++++..++...  +  
T Consensus        80 ~~~~~~~~~~~~~--~~~~~~g~q~~~--~~~~~v~i~l~liRL~~~~TDilit~NvP~~---~~~~a~~~~~~~--~--  148 (173)
T cd00224          80 QPLSLEGTSLTGC--CAWLLSGKQENQ--EVAKDVTIHVALIRLPQYQTDLLLTFNQPPP---DSRSSVGSNLLS--P--  148 (173)
T ss_pred             cccccCcccccce--eeEEeecccccc--cCcCeeEEEEEEEECCCccccEEEEEecCCc---hhhhccCccccc--c--
Confidence            6665433222211  134555655433  4678899999999999999999999999964   333333332211  1  


Q ss_pred             ccccccHHHHHHHhhheeeEecCCCCC
Q 029036          169 QSGFMQMSEVFKLAVSSFKVNDWSLFG  195 (200)
Q Consensus       169 ~~~~~~~~~~f~~~~~sf~V~D~sLF~  195 (200)
                       .+. .++.+|++++.||+|+||||||
T Consensus       149 -~~~-~a~~~~~~~~~sf~V~D~~LFg  173 (173)
T cd00224         149 -ASC-WSLGDFEQLVTSLTLHDPNLFG  173 (173)
T ss_pred             -hhh-hHHHHHHHHhhEEEeecccccC
Confidence             111 1578999999999999999996

Binding is independent of Ran's nucleotide state (RanGTP/RanGDP)

>PF04603 Mog1: Ran-interacting Mog1 protein; InterPro: IPR007681 Segregation of nuclear and cytoplasmic processes facilitates regulation of many eukaryotic cellular functions such as gene expression and cell cycle progression

Probab=100.00  E-value=9.4e-55  Score=345.38  Aligned_cols=138  Identities=43%  Similarity=0.671  Sum_probs=100.9

Q ss_pred             cccccceeEeeCCCCCccccCccccCCcceEeecCCCCceEEEEeeccccCCCchhHHHHHHHhhhcccCCCCceEEeec
Q 029036            9 RPLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKLDVGDNGSAAWFLQDLATEQDAEGCTLLEQS   88 (200)
Q Consensus         9 ~~LyGGAIt~~lP~~fiDvS~lRqVPDnQEVFv~~~~d~SiIvElLE~v~~~~d~~A~~~Hf~Dla~~N~a~~~~~i~~~   88 (200)
                      ++||||||++.||++|+|+|+|||||||||||+++++|+|||||||||+++++|++|++|||+|||++|++.+ ..+++.
T Consensus         2 ~~LyGGAi~~~lP~~f~DvS~~RqVPD~QEVf~~~~~d~SiIielle~~~~~~d~~a~~~hf~dla~~n~a~~-~~i~~~   80 (141)
T PF04603_consen    2 RPLYGGAITCDLPSGFIDVSDFRQVPDNQEVFVDPSTDQSIIIELLERVEEVDDEEAARFHFEDLADDNDASS-STILSV   80 (141)
T ss_dssp             EEEGGGTEEEEE-TTEEEGGGTS---TTEEEEEE--S--EEEEEEEE--S--SHHHHHHHHHHHHHHCCTEEE-EE----
T ss_pred             ccccCceEEEeCCCCccchhhceeCCCCCEEeEeCCCCeEEEEEEecccCCCChHHHHHHHHHhhhcccCccc-eeeecc
Confidence            6899999999999999999999999999999999999999999999999999999999999999999999865 446666


Q ss_pred             eeeccCCCCCCCCCceEEEEEeee--cccCccccceEEEEEEEEEcCCCCeeEEEEEeccC
Q 029036           89 GVVEAPGLRYKDLPATVTTAVGQM--GRQGREAQNIVKVYLANLRLKEVGTDVLVTAYEPL  147 (200)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~g~~--~k~~~~~~~~V~i~l~liRL~~~~TDilIt~NvP~  147 (200)
                      .+++...++.......++.+.|.|  +|++++.++.|.||||||||++++||||||+|+|+
T Consensus        81 ~~l~~~~~~~~~~~~~~~~l~G~q~v~K~~~~~~~~v~i~laliRL~~~~TDilIt~N~Pl  141 (141)
T PF04603_consen   81 EPLSEDQLGLPSECPSASVLVGTQKVAKFNEEAANTVRIYLALIRLPEVSTDILITVNVPL  141 (141)
T ss_dssp             -EEEEEEEE-TTTEEEEEEEEEEETTS---TTSS--EEEEEEEEEEGGGTEEEEEEEEEE-
T ss_pred             cccccccccCCCCCccEEEEEeccccccccccCCCeEEEEEEEEeCCCCCCeEEEEeccCC
Confidence            666554443222333457788988  78888888999999999999999999999999995

Trafficking through the nuclear pore requires a number of highly conserved soluble factors that escort macromolecular substrates into and out of the nucleus. The Mog1 protein has been shown to interact with RanGTP, which stimulates guanine nucleotide release, suggesting Mog1 regulates the nuclear transport functions of Ran []. The human homologue of Mog1 is thought to be alternatively spliced.; PDB: 1JHS_A 1EQ6_A.

>KOG3329 consensus RAN guanine nucleotide release factor [Signal transduction mechanisms]

Probab=100.00  E-value=3.9e-49  Score=317.10  Aligned_cols=182  Identities=40%  Similarity=0.470  Sum_probs=139.1

Q ss_pred             CCCcccccccceeEeeCCCCCccccCccccCCcceEeecCCCCceEEEEeeccccCCCchhHHHHHHHhhhcccCCCCc-
Q 029036            4 DLYSERPLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKLDVGDNGSAAWFLQDLATEQDAEGC-   82 (200)
Q Consensus         4 ~~~~~~~LyGGAIt~~lP~~fiDvS~lRqVPDnQEVFv~~~~d~SiIvElLE~v~~~~d~~A~~~Hf~Dla~~N~a~~~-   82 (200)
                      ++.+.++||||||++.+|++|||||+|||||||||||+++++|+|+||||||.++++-|...+.|||+||+..|++... 
T Consensus         2 e~~~~~pLfGGAisav~P~gfiDvS~LRqVPDnQEVfv~p~rDesli~eLle~~a~v~d~~~a~~~~n~~~~~q~a~e~~   81 (185)
T KOG3329|consen    2 EPTRDVPLFGGAISAVFPPGFIDVSDLRQVPDNQEVFVHPSRDESLIVELLELQAHVRDELEAVYHFNDLAAWQDAVEDL   81 (185)
T ss_pred             CcccccccccceeeeccCcccccHhhcccCCCCceEeecCCchHHHHHHHHhhhhhccchhhhhhhhhhHHHhhhhHhhh
Confidence            5778899999999999999999999999999999999999999999999999999999999999999999999996532 


Q ss_pred             eEEeeceeeccCCCCCCCCCceEEEEEeee-cccCccccceEEEEEEEEEcCCCCeeEEEEEeccCcCCCCcccccccCC
Q 029036           83 TLLEQSGVVEAPGLRYKDLPATVTTAVGQM-GRQGREAQNIVKVYLANLRLKEVGTDVLVTAYEPLLINPLSESASTVGA  161 (200)
Q Consensus        83 ~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~-~k~~~~~~~~V~i~l~liRL~~~~TDilIt~NvP~~~~~~s~~~~~~~~  161 (200)
                      ..+..+..+...+.....+.++....++++ .|+++.....++.+..++||+++.||++||+|.|+.   .++++.    
T Consensus        82 ~~~~~sl~~e~~~l~~r~q~a~~t~~~~q~v~k~nkr~~~~~t~v~v~lrlpqfqtdlviS~Nap~p---~~~~~~----  154 (185)
T KOG3329|consen   82 TESNQSLSWEALGLDGRCQEAWVTSGKMQQVAKENKRVAKDVTLVQVLLRLPQFQTDLVISFNAPLP---DNSSSL----  154 (185)
T ss_pred             hhhccccccccccccchhhhhhhhhhHHHHHHHcCCccchhhhhhhhhhcccccccceEEEecCCCc---chhhcc----
Confidence            222223333333333444455544555555 455443333344555566999999999999999985   222111    


Q ss_pred             CCCCCccccccccHHHHHHHhhheeeEecCCCCC
Q 029036          162 GLPVPATQSGFMQMSEVFKLAVSSFKVNDWSLFG  195 (200)
Q Consensus       162 ~~~~~~~~~~~~~~~~~f~~~~~sf~V~D~sLF~  195 (200)
                         .++.+..++++++.|+++++||+++||+|||
T Consensus       155 ---~pe~~S~~~~~l~~iqq~vrsl~l~D~nlFg  185 (185)
T KOG3329|consen  155 ---GPENQSPAPASLGDIQQLVRSLTLVDPNLFG  185 (185)
T ss_pred             ---CcccccccchHHHHHHHHhheEEeccccccC
Confidence               1223445566899999999999999999997

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	200
1eq6_A	189	1.9 Angstrom Resolution Crystal Structure Of The Sa		3e-09
1jhs_A	188	Protein Mog1 E65a Mutant Length = 188		2e-08

>pdb|1EQ6|A Chain A, 1.9 Angstrom Resolution Crystal Structure Of The Saccharomyces Cerevisiae Ran-Binding Protein Mog1p Length = 189

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 60/202 (29%), Positives = 95/202 (47%), Gaps = 30/202 (14%)
Query: 7   SERPLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRD-----------ESLIFELLD 55
            E  L+GGAI++  P  F D S +R+VPD QEV+V+  RD           ES+I +LL+
Sbjct: 5   KEVELYGGAITTVVPPGFIDASTLREVPDTQEVYVNSRRDEEEFEDGLATNESIIVDLLE 64
Query: 56  FKLDVGDNGSAAWF-LQDLATEQDAEGCTLLEQSGVVEAPGLRYKDLPATVTTAVGQMGR 114
             +D  D   A  F ++DL           L++  V +  G ++  L   V    G+   
Sbjct: 65  -TVDKSDLKEAWQFHVEDLTELNGTTKWEALQEDTVQQ--GTKFTGLVMEVANKWGKPDL 121
Query: 115 QGREAQNIVKVYLANLRLKEVGTDVLVTAYEPLLIN-PLSESASTVGAGLPVPATQSGFM 173
               AQ +V + +A +RL +  TDV+++      IN PL++  ++  +   +PA      
Sbjct: 122 ----AQTVV-IGVALIRLTQFDTDVVIS------INVPLTKEEASQASNKELPARCHAVY 170
Query: 174 QMSEVFKLAVSSFKVNDWSLFG 195
           Q+    +  V  F V D SLF 
Sbjct: 171 QL---LQEMVRKFHVVDTSLFA 189

>pdb|1JHS|A Chain A, Protein Mog1 E65a Mutant Length = 188

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 94/202 (46%), Gaps = 30/202 (14%)
Query: 7   SERPLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRD-----------ESLIFELLD 55
            E  L+GGAI++  P  F D S +R+VPD Q V+V+  RD           ES+I +LL+
Sbjct: 4   KEVELYGGAITTVVPPGFIDASTLREVPDTQAVYVNSRRDEEEFEDGLATNESIIVDLLE 63
Query: 56  FKLDVGDNGSAAWF-LQDLATEQDAEGCTLLEQSGVVEAPGLRYKDLPATVTTAVGQMGR 114
             +D  D   A  F ++DL           L++  V +  G ++  L   V    G+   
Sbjct: 64  -TVDKSDLKEAWQFHVEDLTELNGTTKWEALQEDTVQQ--GTKFTGLVMEVANKWGKPDL 120
Query: 115 QGREAQNIVKVYLANLRLKEVGTDVLVTAYEPLLIN-PLSESASTVGAGLPVPATQSGFM 173
               AQ +V + +A +RL +  TDV+++      IN PL++  ++  +   +PA      
Sbjct: 121 ----AQTVV-IGVALIRLTQFDTDVVIS------INVPLTKEEASQASNKELPARCHAVY 169
Query: 174 QMSEVFKLAVSSFKVNDWSLFG 195
           Q+    +  V  F V D SLF 
Sbjct: 170 QL---LQEMVRKFHVVDTSLFA 188

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	200
1eq6_A	189	MOG1P; alpha-beta, protein transport; 1.90A {Sacch	2e-57

>1eq6_A MOG1P; alpha-beta, protein transport; 1.90A {Saccharomyces cerevisiae} SCOP: d.107.1.1 PDB: 1jhs_A Length = 189

 Score =  178 bits (453), Expect = 2e-57
 Identities = 46/201 (22%), Positives = 81/201 (40%), Gaps = 26/201 (12%)

Query: 6   YSERPLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSR-----------DESLIFELL 54
             E  L+GGAI++  P  F D S +R+VPD QEV+V+  R           +ES+I +LL
Sbjct: 4   NKEVELYGGAITTVVPPGFIDASTLREVPDTQEVYVNSRRDEEEFEDGLATNESIIVDLL 63

Query: 55  DFKLDVGDNGSAAWFLQDLATEQDAEGCTLLEQSGVVEAPGLRYKDLPATVTTAVGQMGR 114
           +         +  + ++DL           L++  V +           T          
Sbjct: 64  ETVDKSDLKEAWQFHVEDLTELNGTTKWEALQEDTVQQGT-------KFTGLVMEVANKW 116

Query: 115 QGREAQNIVKVYLANLRLKEVGTDVLVTAYEPLLINPLSESASTVGAGLPVPATQSGFMQ 174
              +    V + +A +RL +  TDV+++   PL     S++++            +    
Sbjct: 117 GKPDLAQTVVIGVALIRLTQFDTDVVISINVPLTKEEASQASNKEL--------PARCHA 168

Query: 175 MSEVFKLAVSSFKVNDWSLFG 195
           + ++ +  V  F V D SLF 
Sbjct: 169 VYQLLQEMVRKFHVVDTSLFA 189

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	200
1eq6_A	189	MOG1P; alpha-beta, protein transport; 1.90A {Sacch	100.0

>1eq6_A MOG1P; alpha-beta, protein transport; 1.90A {Saccharomyces cerevisiae} SCOP: d.107.1.1 PDB: 1jhs_A

Probab=100.00  E-value=1e-59  Score=388.97  Aligned_cols=172  Identities=27%  Similarity=0.415  Sum_probs=134.4

Q ss_pred             cccccccceeEeeCCCCCccccCccccCCcceEeecCC-----------CCceEEEEeeccccCCCchhHHHHHHHhhhc
Q 029036            7 SERPLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPS-----------RDESLIFELLDFKLDVGDNGSAAWFLQDLAT   75 (200)
Q Consensus         7 ~~~~LyGGAIt~~lP~~fiDvS~lRqVPDnQEVFv~~~-----------~d~SiIvElLE~v~~~~d~~A~~~Hf~Dla~   75 (200)
                      ++++||||||+|.||++|+|||+|||||||||||++++           +|+|||||||||+++++|.+|++|||+|||+
T Consensus         5 ~~~~LfGGAI~~~lP~~f~DvS~lRqVPDnQEVFv~~~~~~~~~~~~~~~d~SiIiElLE~v~~~~d~~A~~~hf~Dla~   84 (189)
T 1eq6_A            5 KEVELYGGAITTVVPPGFIDASTLREVPDTQEVYVNSRRDEEEFEDGLATNESIIVDLLETVDKSDLKEAWQFHVEDLTE   84 (189)
T ss_dssp             EEEEEGGGTEEEEECTTEEEGGGTSCCCTTEEEEEECCCSSCCCSSSCCSCCEEEEEEEECCSCCSHHHHHHHHHHHHHG
T ss_pred             ccccccCceEEeeCCCCccchhhcccCCCCcEEEEcCcccccccccccCCCceEEEEeecccCCcChHHHHHHHHHHHhh
Confidence            47899999999999999999999999999999999976           8999999999999999999999999999999


Q ss_pred             ccCCCCceEEeeceeeccCCCCCCCCCceEE-EEEeeecccC-ccccceEEEEEEEEEcCCCCeeEEEEEeccCcCCCCc
Q 029036           76 EQDAEGCTLLEQSGVVEAPGLRYKDLPATVT-TAVGQMGRQG-REAQNIVKVYLANLRLKEVGTDVLVTAYEPLLINPLS  153 (200)
Q Consensus        76 ~N~a~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~g~~~k~~-~~~~~~V~i~l~liRL~~~~TDilIt~NvP~~~~~~s  153 (200)
                      +|++..+.++. ...++.        +.+.| ++.+...|++ ...+++|.||||||||++++||||||+|+|++.++.+
T Consensus        85 ~n~~~~~~v~~-~~~~~~--------~~~~~~~~~~~~~k~~~~~~~~~v~i~l~liRL~~~~TDiLIt~NvP~~~~~~~  155 (189)
T 1eq6_A           85 LNGTTKWEALQ-EDTVQQ--------GTKFTGLVMEVANKWGKPDLAQTVVIGVALIRLTQFDTDVVISINVPLTKEEAS  155 (189)
T ss_dssp             GGTEEEEEEEE-EEEEET--------TTEEEEEEEEEEETTSCTTSSCCEEEEEEEEEEGGGTEEEEEEEEEECCHHHHH
T ss_pred             cccCcceeEEe-ecccCC--------CCcceEEEEeeeeccCccccccceEEEEEEEecCCCCccEEEEEecCCCcchhh
Confidence            99976554433 334431        23344 3333334443 2357889999999999999999999999998533322


Q ss_pred             ccccccCCCCCCCccccccccHHHHHHHhhheeeEecCCCCC
Q 029036          154 ESASTVGAGLPVPATQSGFMQMSEVFKLAVSSFKVNDWSLFG  195 (200)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~sf~V~D~sLF~  195 (200)
                      ..    + +...+   ..+..++++|+++++||+|+|||||+
T Consensus       156 ~~----~-~~~~~---~~~~~~~~~f~~~~~Sf~V~Dw~LF~  189 (189)
T 1eq6_A          156 QA----S-NKELP---ARCHAVYQLLQEMVRKFHVVDTSLFA  189 (189)
T ss_dssp             HH----T-TTCCC---HHHHHHHHHHHHHHHTCEESCGGGCC
T ss_pred             cc----c-ccccc---hhhhHHHHHHHHHHhheEeechhccC
Confidence            21    1 11111   12233689999999999999999996

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	200
d1jhsa_	188	d.107.1.1 (A:) Ran-binding protein mog1p {Baker's	2e-56

>d1jhsa_ d.107.1.1 (A:) Ran-binding protein mog1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 188

class: Alpha and beta proteins (a+b)
fold: Mog1p/PsbP-like
superfamily: Mog1p/PsbP-like
family: Ran-binding protein mog1p
domain: Ran-binding protein mog1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  174 bits (443), Expect = 2e-56
 Identities = 47/200 (23%), Positives = 80/200 (40%), Gaps = 26/200 (13%)

Query: 6   YSERPLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSR-----------DESLIFELL 54
             E  L+GGAI++  P  F D S +R+VPD Q V+V+  R           +ES+I +LL
Sbjct: 3   NKEVELYGGAITTVVPPGFIDASTLREVPDTQAVYVNSRRDEEEFEDGLATNESIIVDLL 62

Query: 55  DFKLDVGDNGSAAWFLQDLATEQDAEGCTLLEQSGVVEAPGLRYKDLPATVTTAVGQMGR 114
           +         +  + ++DL           L++  V +           T          
Sbjct: 63  ETVDKSDLKEAWQFHVEDLTELNGTTKWEALQEDTVQQGT-------KFTGLVMEVANKW 115

Query: 115 QGREAQNIVKVYLANLRLKEVGTDVLVTAYEPLLINPLSESASTVGAGLPVPATQSGFMQ 174
              +    V + +A +RL +  TDV+++   PL     S++       LP     +    
Sbjct: 116 GKPDLAQTVVIGVALIRLTQFDTDVVISINVPLTKEEASQA---SNKELP-----ARCHA 167

Query: 175 MSEVFKLAVSSFKVNDWSLF 194
           + ++ +  V  F V D SLF
Sbjct: 168 VYQLLQEMVRKFHVVDTSLF 187

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	200
d1jhsa_	188	Ran-binding protein mog1p {Baker's yeast (Saccharo	100.0

>d1jhsa_ d.107.1.1 (A:) Ran-binding protein mog1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Mog1p/PsbP-like
superfamily: Mog1p/PsbP-like
family: Ran-binding protein mog1p
domain: Ran-binding protein mog1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5e-60  Score=388.75  Aligned_cols=174  Identities=25%  Similarity=0.366  Sum_probs=134.9

Q ss_pred             CcccccccceeEeeCCCCCccccCccccCCcceEeecC-----------CCCceEEEEeeccccCCCchhHHHHHHHhhh
Q 029036            6 YSERPLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDP-----------SRDESLIFELLDFKLDVGDNGSAAWFLQDLA   74 (200)
Q Consensus         6 ~~~~~LyGGAIt~~lP~~fiDvS~lRqVPDnQEVFv~~-----------~~d~SiIvElLE~v~~~~d~~A~~~Hf~Dla   74 (200)
                      +++++||||||++.||++|+|||+|||||||||||+|+           ++|+|||||||||+++.+|.+|++|||+|||
T Consensus         3 ~~e~~LfGGAI~~~lP~~f~DvS~~RqVPDnQEVFv~~~~~~~~~~~~~~~d~SiIvElLE~v~~~~d~~A~~~h~~Dla   82 (188)
T d1jhsa_           3 NKEVELYGGAITTVVPPGFIDASTLREVPDTQAVYVNSRRDEEEFEDGLATNESIIVDLLETVDKSDLKEAWQFHVEDLT   82 (188)
T ss_dssp             CEEEEEGGGTEEEEECTTEEEGGGTSCCCTTEEEEEECCCSSCCCTTSCCSCCEEEEEEEECCSCCSHHHHHHHHHHHHH
T ss_pred             cccccccCceEEEecCCCceeccccccCCCCcEEeecCccccccccccCCCCceEEEEhhhcccccChHHHHHHHHHHhh
Confidence            57899999999999999999999999999999999997           4789999999999999999999999999999


Q ss_pred             cccCCCCceEEeeceeeccCCCCCCCCCceEEEEEeee-cccCccccceEEEEEEEEEcCCCCeeEEEEEeccCcCCCCc
Q 029036           75 TEQDAEGCTLLEQSGVVEAPGLRYKDLPATVTTAVGQM-GRQGREAQNIVKVYLANLRLKEVGTDVLVTAYEPLLINPLS  153 (200)
Q Consensus        75 ~~N~a~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~-~k~~~~~~~~V~i~l~liRL~~~~TDilIt~NvP~~~~~~s  153 (200)
                      +.|++..+.++... .+.       ....+.++..... ++.+.+..++|.|||||||||+++||||||+|+|+...+.+
T Consensus        83 ~~n~~~~~~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~~v~i~l~liRL~~~~TDiLit~NvP~~~~~~~  154 (188)
T d1jhsa_          83 ELNGTTKWEALQED-TVQ-------QGTKFTGLVMEVANKWGKPDLAQTVVIGVALIRLTQFDTDVVISINVPLTKEEAS  154 (188)
T ss_dssp             HTTTEEEEEEEEEE-EEE-------TTTEEEEEEEEEEETTSCTTSSCCEEEEEEEEEEGGGTEEEEEEEEEECCHHHHH
T ss_pred             ccCCCcceeEeecc-ccc-------cCCceeEEEEEeeeecCCcCCCcEEEEEEEEEECCCcCceEEEEEeccCCccccc
Confidence            99998655444332 222       1122223333322 33344567889999999999999999999999998654333


Q ss_pred             ccccccCCCCCCCccccccccHHHHHHHhhheeeEecCCCCC
Q 029036          154 ESASTVGAGLPVPATQSGFMQMSEVFKLAVSSFKVNDWSLFG  195 (200)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~sf~V~D~sLF~  195 (200)
                      ...  ..   ..+   .+...++++|++|++||+|+|||||+
T Consensus       155 ~~~--~~---~~~---~~~~~~~~~~~~~~~sf~V~Dw~LFa  188 (188)
T d1jhsa_         155 QAS--NK---ELP---ARCHAVYQLLQEMVRKFHVVDTSLFA  188 (188)
T ss_dssp             HHH--TT---CCC---HHHHHHHHHHHHHHHHCEESCGGGGC
T ss_pred             ccc--cc---ccc---chhhHHHHHHHHHhheeEeecccccC
Confidence            221  11   111   11223689999999999999999995