Citrus Sinensis ID: 029052

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200
MKTILSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNFLGEKKVRKVDMLDGVTVVRSEKVKDELILDGNDIELVSRSAALINQVGLCVCLCVCVRNLPVLTARSFILTEMPCEEQGH
ccEEEccEEEEcccccEEEEEccEEEEEccccEEEEEEccccEEEEEcccccccccEEEEEEcccccccccHHHcHHHHHHcccccccccEEEEEEEEEEEEcccEEEccccEEEEEEEcccccEEEEEEcccccEEEEccccccEEEEEEccHHHHHHHHHHHHHcccccccccccccccEEcccEEEEEEcccccccc
ccEEEEEEEEEccccEEEEEEEEEEEEEccccEEEEcccccEEEEEEEccccccccEEEEEEEcccHHHHHHHHHHHHHHHHHHHccccccEEEEEEEEEEccEEEEEEccccEEEEEEcccccEEEEEEccccEEEEEccccccEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHEHHHHHHcccccHHccc
mktilssetmdipdgvKIKINAKIIevegprgklsrdfkhlnldfhlmtdeetgkrklkidawfgsrkTSAAIRTALSHvgnlitgvtKGYRYKMRFVYAhfpinasignanKSIEIRNFlgekkvrkvdmldgvtvvrsekvkdelildgndieLVSRSAALINQVGLCVCLCvcvrnlpvltARSFIltempceeqgh
mktilssetmdipdgvkIKINAKIIevegprgklsrdfkhLNLDfhlmtdeetgkrklkidaWFGSRKTSAAIRtalshvgnlitgVTKGYRYKMRFVYAHFPinasignankSIEIRNFlgekkvrkvdmldgvtvvrsekvkdelildgNDIELVSRSAALINQVGLCVCLCVCVRNLPVLTARSFIltempceeqgh
MKTILSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNFLGEKKVRKVDMLDGVTVVRSEKVKDELILDGNDIELVSRSAALINQVGlcvclcvcvrnlpvlTARSFILTEMPCEEQGH
*************DGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNFLGEKKVRKVDMLDGVTVVRSEKVKDELILDGNDIELVSRSAALINQVGLCVCLCVCVRNLPVLTARSFILTE********
MKTILSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNFLGEKKVRKVDMLDGVTVVRSEKVKDELILDGNDIELVSRSAALINQVGLCVCLCVCVRNLPVLTARSFIL**********
MKTILSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNFLGEKKVRKVDMLDGVTVVRSEKVKDELILDGNDIELVSRSAALINQVGLCVCLCVCVRNLPVLTARSFILTEMPCEEQGH
MKTILSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNFLGEKKVRKVDMLDGVTVVRSEKVKDELILDGNDIELVSRSAALINQVGLCVCLCVCVRNLPVLTARSFILTEMPC*****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKTILSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNFLGEKKVRKVDMLDGVTVVRSEKVKDELILDGNDIELVSRSAALINQVGLCVCLCVCVRNLPVLTARSFILTEMPCEEQGH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query200 2.2.26 [Sep-21-2011]
P30707193 60S ribosomal protein L9 N/A no 0.825 0.854 0.867 8e-79
P49209194 60S ribosomal protein L9- yes no 0.83 0.855 0.843 1e-78
Q9SZX9194 60S ribosomal protein L9- no no 0.83 0.855 0.837 8e-78
P49210190 60S ribosomal protein L9 yes no 0.81 0.852 0.783 8e-74
Q90YW0192 60S ribosomal protein L9 N/A no 0.815 0.848 0.548 2e-47
P51410192 60S ribosomal protein L9 yes no 0.815 0.848 0.554 4e-47
Q5IFJ7192 60S ribosomal protein L9 N/A no 0.815 0.848 0.560 5e-47
P17077192 60S ribosomal protein L9 yes no 0.815 0.848 0.554 7e-47
Q3SYR7192 60S ribosomal protein L9 yes no 0.815 0.848 0.554 7e-47
P32969192 60S ribosomal protein L9 yes no 0.815 0.848 0.554 7e-47
>sp|P30707|RL9_PEA 60S ribosomal protein L9 OS=Pisum sativum GN=RPL9 PE=2 SV=1 Back     alignment and function desciption
 Score =  293 bits (749), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 144/166 (86%), Positives = 156/166 (93%), Gaps = 1/166 (0%)

Query: 1   MKTILSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
           MKTILSSETM+IPDGV IK+NAK+IEVEGPRGKL RDFKHLNLDF L+TDE  GK+KLKI
Sbjct: 1   MKTILSSETMNIPDGVTIKVNAKVIEVEGPRGKLVRDFKHLNLDFDLITDE-NGKKKLKI 59

Query: 61  DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNF 120
           DAWFGSRKTSAAIRTALSHV NLITGVTKG+RYKMRFVYA FPINASI N NKSIEIRNF
Sbjct: 60  DAWFGSRKTSAAIRTALSHVENLITGVTKGFRYKMRFVYADFPINASITNDNKSIEIRNF 119

Query: 121 LGEKKVRKVDMLDGVTVVRSEKVKDELILDGNDIELVSRSAALINQ 166
           LGEKKVRKVD+LDGV+++RSEKVKDE++LDGNDIELVSRS ALINQ
Sbjct: 120 LGEKKVRKVDLLDGVSIIRSEKVKDEVVLDGNDIELVSRSCALINQ 165

Pisum sativum (taxid: 3888)
>sp|P49209|RL91_ARATH 60S ribosomal protein L9-1 OS=Arabidopsis thaliana GN=RPL9B PE=2 SV=3 Back     alignment and function description
>sp|Q9SZX9|RL92_ARATH 60S ribosomal protein L9-2 OS=Arabidopsis thaliana GN=RPL9D PE=2 SV=1 Back     alignment and function description
>sp|P49210|RL9_ORYSJ 60S ribosomal protein L9 OS=Oryza sativa subsp. japonica GN=RPL9 PE=2 SV=3 Back     alignment and function description
>sp|Q90YW0|RL9_ICTPU 60S ribosomal protein L9 OS=Ictalurus punctatus GN=rpl9 PE=2 SV=1 Back     alignment and function description
>sp|P51410|RL9_MOUSE 60S ribosomal protein L9 OS=Mus musculus GN=Rpl9 PE=2 SV=2 Back     alignment and function description
>sp|Q5IFJ7|RL9_MACFA 60S ribosomal protein L9 OS=Macaca fascicularis GN=RPL9 PE=2 SV=1 Back     alignment and function description
>sp|P17077|RL9_RAT 60S ribosomal protein L9 OS=Rattus norvegicus GN=Rpl9 PE=1 SV=1 Back     alignment and function description
>sp|Q3SYR7|RL9_BOVIN 60S ribosomal protein L9 OS=Bos taurus GN=RPL9 PE=2 SV=1 Back     alignment and function description
>sp|P32969|RL9_HUMAN 60S ribosomal protein L9 OS=Homo sapiens GN=RPL9 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query200
307135913194 60S ribosomal protein l9 [Cucumis melo s 0.83 0.855 0.921 4e-84
449456337194 PREDICTED: 60S ribosomal protein L9-like 0.83 0.855 0.915 1e-83
255555849194 60S ribosomal protein L9, putative [Rici 0.83 0.855 0.915 2e-83
255564790194 60S ribosomal protein L9, putative [Rici 0.83 0.855 0.903 2e-82
255555845194 60S ribosomal protein L9, putative [Rici 0.83 0.855 0.903 8e-82
225455175193 PREDICTED: 60S ribosomal protein L9 [Vit 0.825 0.854 0.903 9e-81
224115436193 predicted protein [Populus trichocarpa] 0.825 0.854 0.897 1e-80
118484047193 unknown [Populus trichocarpa] 0.825 0.854 0.897 2e-80
224117728193 predicted protein [Populus trichocarpa] 0.825 0.854 0.897 2e-80
224147866165 predicted protein [Populus trichocarpa] 0.825 1.0 0.891 2e-80
>gi|307135913|gb|ADN33776.1| 60S ribosomal protein l9 [Cucumis melo subsp. melo] Back     alignment and taxonomy information
 Score =  316 bits (809), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 153/166 (92%), Positives = 162/166 (97%)

Query: 1   MKTILSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
           MKTILSSETMDIPDGVKIK+NAKIIEVEGPRGKL R+FKHLNLDF L+TDE+TGK+KLKI
Sbjct: 1   MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDEDTGKKKLKI 60

Query: 61  DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNF 120
           DAWFGSRKTSAAIRTALSHV NLITGVTKGYRYKMRFVYAHFPINASI N+NKSIEIRNF
Sbjct: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNSNKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVTVVRSEKVKDELILDGNDIELVSRSAALINQ 166
           LGEKKVRKVDMLDGV++VRSEKVKDEL+LDGNDIELVSRSAALINQ
Sbjct: 121 LGEKKVRKVDMLDGVSIVRSEKVKDELVLDGNDIELVSRSAALINQ 166

Source: Cucumis melo subsp. melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449456337|ref|XP_004145906.1| PREDICTED: 60S ribosomal protein L9-like [Cucumis sativus] gi|449497261|ref|XP_004160355.1| PREDICTED: 60S ribosomal protein L9-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255555849|ref|XP_002518960.1| 60S ribosomal protein L9, putative [Ricinus communis] gi|223541947|gb|EEF43493.1| 60S ribosomal protein L9, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|255564790|ref|XP_002523389.1| 60S ribosomal protein L9, putative [Ricinus communis] gi|223537339|gb|EEF38968.1| 60S ribosomal protein L9, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|255555845|ref|XP_002518958.1| 60S ribosomal protein L9, putative [Ricinus communis] gi|223541945|gb|EEF43491.1| 60S ribosomal protein L9, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225455175|ref|XP_002268859.1| PREDICTED: 60S ribosomal protein L9 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224115436|ref|XP_002317034.1| predicted protein [Populus trichocarpa] gi|118484523|gb|ABK94136.1| unknown [Populus trichocarpa] gi|222860099|gb|EEE97646.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|118484047|gb|ABK93909.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224117728|ref|XP_002317653.1| predicted protein [Populus trichocarpa] gi|222860718|gb|EEE98265.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224147866|ref|XP_002336554.1| predicted protein [Populus trichocarpa] gi|222835949|gb|EEE74370.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query200
TAIR|locus:2206965194 AT1G33120 [Arabidopsis thalian 0.83 0.855 0.843 8.6e-72
TAIR|locus:2196646194 PGY2 "PIGGYBACK2" [Arabidopsis 0.83 0.855 0.843 8.6e-72
TAIR|locus:2127661194 AT4G10450 [Arabidopsis thalian 0.83 0.855 0.837 9.9e-71
ZFIN|ZDB-GENE-030131-8646193 rpl9 "ribosomal protein L9" [D 0.815 0.844 0.548 2.4e-44
MGI|MGI:1298373192 Rpl9 "ribosomal protein L9" [M 0.815 0.848 0.554 6.4e-44
UNIPROTKB|Q3SYR7192 RPL9 "60S ribosomal protein L9 0.815 0.848 0.554 8.1e-44
UNIPROTKB|E2R149192 RPL9 "Uncharacterized protein" 0.815 0.848 0.554 1e-43
UNIPROTKB|E7ESE0166 RPL9 "60S ribosomal protein L9 0.815 0.981 0.554 1e-43
UNIPROTKB|P32969192 RPL9 "60S ribosomal protein L9 0.815 0.848 0.554 1e-43
UNIPROTKB|I3LP78192 RPL9 "Uncharacterized protein" 0.815 0.848 0.554 1e-43
TAIR|locus:2206965 AT1G33120 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 726 (260.6 bits), Expect = 8.6e-72, P = 8.6e-72
 Identities = 140/166 (84%), Positives = 155/166 (93%)

Query:     1 MKTILSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
             MKTILSSETMDIPD V IK++AK+IEVEGPRGKL RDFKHLNLDF L+ D ETGK+KLKI
Sbjct:     1 MKTILSSETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKI 60

Query:    61 DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNF 120
             D+WFG+RKTSA+IRTALSHV NLI+GVT+G+RYKMRFVYAHFPINASIG   KSIEIRNF
Sbjct:    61 DSWFGTRKTSASIRTALSHVDNLISGVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNF 120

Query:   121 LGEKKVRKVDMLDGVTVVRSEKVKDELILDGNDIELVSRSAALINQ 166
             LGEKKVRKV+MLDGVT+VRSEKVKDE++LDGNDIELVSRS ALINQ
Sbjct:   121 LGEKKVRKVEMLDGVTIVRSEKVKDEIVLDGNDIELVSRSCALINQ 166
GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS
GO:0005622 "intracellular" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0005840 "ribosome" evidence=IEA
GO:0006412 "translation" evidence=IEA;ISS
GO:0015934 "large ribosomal subunit" evidence=ISS
GO:0019843 "rRNA binding" evidence=IEA
GO:0009507 "chloroplast" evidence=IDA
GO:0005773 "vacuole" evidence=IDA
GO:0005730 "nucleolus" evidence=IDA
GO:0022626 "cytosolic ribosome" evidence=IDA
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0016020 "membrane" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=RCA
TAIR|locus:2196646 PGY2 "PIGGYBACK2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2127661 AT4G10450 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-8646 rpl9 "ribosomal protein L9" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:1298373 Rpl9 "ribosomal protein L9" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q3SYR7 RPL9 "60S ribosomal protein L9" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2R149 RPL9 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E7ESE0 RPL9 "60S ribosomal protein L9" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P32969 RPL9 "60S ribosomal protein L9" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|I3LP78 RPL9 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P49209RL91_ARATHNo assigned EC number0.84330.830.8556yesno
Q5IFJ7RL9_MACFANo assigned EC number0.56020.8150.8489N/Ano
P05738RL9A_YEASTNo assigned EC number0.46740.810.8481yesno
Q95Y90RL9_CAEELNo assigned EC number0.48790.8050.8518yesno
P51410RL9_MOUSENo assigned EC number0.55420.8150.8489yesno
Q9SZX9RL92_ARATHNo assigned EC number0.83730.830.8556nono
P50882RL9_DROMENo assigned EC number0.54810.8050.8473yesno
P49210RL9_ORYSJNo assigned EC number0.78310.810.8526yesno
Q54XI5RL9_DICDINo assigned EC number0.50300.80.8510yesno
Q963B7RL9_SPOFRNo assigned EC number0.53610.8050.8473N/Ano
P30707RL9_PEANo assigned EC number0.86740.8250.8549N/Ano
Q5R9Q7RL9_PONABNo assigned EC number0.55420.8150.8489yesno
Q3SYR7RL9_BOVINNo assigned EC number0.55420.8150.8489yesno
P17077RL9_RATNo assigned EC number0.55420.8150.8489yesno
P32969RL9_HUMANNo assigned EC number0.55420.8150.8489yesno
P51401RL9B_YEASTNo assigned EC number0.47330.810.8481yesno
Q90YW0RL9_ICTPUNo assigned EC number0.54810.8150.8489N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00037149001
SubName- Full=Chromosome chr16 scaffold_86, whole genome shotgun sequence; (193 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00018552001
SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (155 aa)
•  •••• 0.981
GSVIVG00034206001
SubName- Full=Putative uncharacterized protein (Chromosome chr9 scaffold_7, whole genome shotgu [...] (129 aa)
•  •••• 0.974
GSVIVG00025575001
SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (307 aa)
•  • •• 0.974
GSVIVG00018776001
SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (173 aa)
•  •••• 0.963
GSVIVG00035844001
SubName- Full=Chromosome chr10 scaffold_81, whole genome shotgun sequence; (173 aa)
•  •••• 0.962
GSVIVG00016417001
SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (83 aa)
•  • •• 0.961
GSVIVG00017864001
RecName- Full=Ribosomal protein L19; (183 aa)
•  •••• 0.949
GSVIVG00005647001
SubName- Full=Chromosome undetermined scaffold_155, whole genome shotgun sequence; (159 aa)
•  • •• 0.947
GSVIVG00024826001
SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (405 aa)
•  •••• 0.943
GSVIVG00034699001
SubName- Full=Chromosome chr5 scaffold_72, whole genome shotgun sequence; (307 aa)
•  •••• 0.943

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query200
PTZ00027190 PTZ00027, PTZ00027, 60S ribosomal protein L6; Prov 5e-71
PTZ00179189 PTZ00179, PTZ00179, 60S ribosomal protein L9; Prov 1e-52
PRK05518180 PRK05518, rpl6p, 50S ribosomal protein L6P; Review 6e-42
TIGR03653170 TIGR03653, arch_L6P, archaeal ribosomal protein L6 5e-38
COG0097178 COG0097, RplF, Ribosomal protein L6P/L9E [Translat 6e-33
TIGR03654175 TIGR03654, L6_bact, ribosomal protein L6, bacteria 4e-08
PRK05498178 PRK05498, rplF, 50S ribosomal protein L6; Validate 1e-07
pfam0034776 pfam00347, Ribosomal_L6, Ribosomal protein L6 1e-07
pfam0034776 pfam00347, Ribosomal_L6, Ribosomal protein L6 4e-05
CHL00140178 CHL00140, rpl6, ribosomal protein L6; Validated 4e-04
>gnl|CDD|240234 PTZ00027, PTZ00027, 60S ribosomal protein L6; Provisional Back     alignment and domain information 
 Score =  213 bits (544), Expect = 5e-71
 Identities = 91/170 (53%), Positives = 122/170 (71%), Gaps = 4/170 (2%)

Query: 1   MKTILSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
           MKTI SSE + IP+GV + + ++ + V G  G+L+R F+HL +D  L  D     + +K+
Sbjct: 1   MKTIFSSEKIRIPEGVTVTVKSRKVTVTGKYGELTRSFRHLPVDIKLSKD----GKYIKV 56

Query: 61  DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNF 120
           + WFG+    A IRT  SH+ N++TGVTK ++YKMR VYAHFPIN++I +  K+IEIRNF
Sbjct: 57  EMWFGTPSHLACIRTVCSHIKNMMTGVTKKFQYKMRLVYAHFPINSNITDNGKTIEIRNF 116

Query: 121 LGEKKVRKVDMLDGVTVVRSEKVKDELILDGNDIELVSRSAALINQVGLC 170
           LGEK+VR V ML GV V +SE VKDE+I+ G D+ELVSRSAALI+Q  L 
Sbjct: 117 LGEKRVRTVKMLPGVVVEKSESVKDEIIVTGADLELVSRSAALIHQSTLV 166

Length = 190
>gnl|CDD|140206 PTZ00179, PTZ00179, 60S ribosomal protein L9; Provisional Back     alignment and domain information
>gnl|CDD|235496 PRK05518, rpl6p, 50S ribosomal protein L6P; Reviewed Back     alignment and domain information
>gnl|CDD|234296 TIGR03653, arch_L6P, archaeal ribosomal protein L6P Back     alignment and domain information
>gnl|CDD|223175 COG0097, RplF, Ribosomal protein L6P/L9E [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|213843 TIGR03654, L6_bact, ribosomal protein L6, bacterial type Back     alignment and domain information
>gnl|CDD|235495 PRK05498, rplF, 50S ribosomal protein L6; Validated Back     alignment and domain information
>gnl|CDD|215872 pfam00347, Ribosomal_L6, Ribosomal protein L6 Back     alignment and domain information
>gnl|CDD|215872 pfam00347, Ribosomal_L6, Ribosomal protein L6 Back     alignment and domain information
>gnl|CDD|177062 CHL00140, rpl6, ribosomal protein L6; Validated Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 200
PRK05518180 rpl6p 50S ribosomal protein L6P; Reviewed 100.0
PTZ00027190 60S ribosomal protein L6; Provisional 100.0
PTZ00179189 60S ribosomal protein L9; Provisional 100.0
TIGR03653170 arch_L6P archaeal ribosomal protein L6P. Members o 100.0
COG0097178 RplF Ribosomal protein L6P/L9E [Translation, ribos 100.0
CHL00140178 rpl6 ribosomal protein L6; Validated 100.0
TIGR03654175 L6_bact ribosomal protein L6, bacterial type. 100.0
PRK05498178 rplF 50S ribosomal protein L6; Validated 100.0
KOG3254211 consensus Mitochondrial/chloroplast ribosomal prot 100.0
KOG3255179 consensus 60S ribosomal protein L9 [Translation, r 99.89
PF0034777 Ribosomal_L6: Ribosomal protein L6; InterPro: IPR0 99.75
PF0034777 Ribosomal_L6: Ribosomal protein L6; InterPro: IPR0 97.74
>PRK05518 rpl6p 50S ribosomal protein L6P; Reviewed Back     alignment and domain information 
Probab=100.00  E-value=1.4e-52  Score=348.17  Aligned_cols=159  Identities=36%  Similarity=0.659  Sum_probs=148.7

Q ss_pred             CcccccceeeEcCCCcEEEEeCcEEEEEcCCcEEEEEeeCCcEEEEEeecCcCCccEEEEEecCCChhhhhhhHhHHHHh
Q 029052            1 MKTILSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHV   80 (200)
Q Consensus         1 mks~igk~~I~IP~~V~V~i~~~~v~VkGp~G~L~~~l~~~~v~i~~~~~~~~~~~~l~i~~~~~~kk~ra~~GT~rslI   80 (200)
                      |-..+.++||.||+||+|+++++.++|+||+|+|+++|+++.+++.+  ++    +.+.++.|++++++||+|||+||||
T Consensus         1 ~~~~~~~~pI~IP~~V~v~i~~~~v~VkGp~G~L~~~~~~~~v~i~~--~~----~~i~v~~~~~~kk~ra~~gt~rslI   74 (180)
T PRK05518          1 MVAAYIREEIEIPEGVTVEIEGLVVTVKGPKGELTRDFWYPGVTISV--ED----GKVVIETEFARKKTKAMVGTFASHI   74 (180)
T ss_pred             CccccccccEEcCCCCEEEEECCEEEEECCCeEEEEEecCCcEEEEE--EC----CEEEEEECCCCHHHHHHHHHHHHHH
Confidence            55567889999999999999999999999999999999876788875  44    6899999999999999999999999


Q ss_pred             hheeeeeccceEEEEEEEEEeecceeEeccCCceEEEecccCceeeEEEeCCCCeEEEecCCccCEEEEEecCHhHHHHH
Q 029052           81 GNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNFLGEKKVRKVDMLDGVTVVRSEKVKDELILDGNDIELVSRS  160 (200)
Q Consensus        81 ~NmI~GVt~Gf~~~L~lvGvGypira~v~~~g~~L~l~n~LG~Shpi~~~IP~gV~v~~~~~~k~~Iii~G~DKe~Vgq~  160 (200)
                      +|||+||++||+++|+++|+||||||++  +|+.|.|+|+||||||+.++||+||++++++ +  +|+|+|+|||+||||
T Consensus        75 ~NmI~GVt~Gf~~~LelvGvGypira~~--~g~~l~l~n~LG~Sh~v~~~iP~gV~v~~~~-t--~I~i~GiDKq~Vgq~  149 (180)
T PRK05518         75 KNMIKGVTEGFEYKLKIVYSHFPMQVKV--QGNEVVIENFLGEKSPRRAKILGGVKVKVKG-E--DVIVEGIDKEDVGQT  149 (180)
T ss_pred             HhhheecccceEEEEEEEecCccEEEEE--cCCEEEEEeccccceeEEEeCCCCeEEEecC-C--EEEEEeCCHHHHHHH
Confidence            9999999999999999999999999999  7889999999999999999999999999987 4  999999999999999


Q ss_pred             HHHHHhhcce
Q 029052          161 AALINQVGLC  170 (200)
Q Consensus       161 AA~Ir~~~~~  170 (200)
                      ||+||+.+++
T Consensus       150 AA~Ir~~~~~  159 (180)
T PRK05518        150 AANIEQATKI  159 (180)
T ss_pred             HHHHHHhhcc
Confidence            9999998764

>PTZ00027 60S ribosomal protein L6; Provisional Back     alignment and domain information
>PTZ00179 60S ribosomal protein L9; Provisional Back     alignment and domain information
>TIGR03653 arch_L6P archaeal ribosomal protein L6P Back     alignment and domain information
>COG0097 RplF Ribosomal protein L6P/L9E [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>CHL00140 rpl6 ribosomal protein L6; Validated Back     alignment and domain information
>TIGR03654 L6_bact ribosomal protein L6, bacterial type Back     alignment and domain information
>PRK05498 rplF 50S ribosomal protein L6; Validated Back     alignment and domain information
>KOG3254 consensus Mitochondrial/chloroplast ribosomal protein L6 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG3255 consensus 60S ribosomal protein L9 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF00347 Ribosomal_L6: Ribosomal protein L6; InterPro: IPR020040 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>PF00347 Ribosomal_L6: Ribosomal protein L6; InterPro: IPR020040 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query200
3izr_F190 Localization Of The Large Subunit Ribosomal Protein 6e-75
2zkr_e192 Structure Of A Mammalian Ribosomal 60s Subunit With 2e-48
1s1i_H191 Structure Of The Ribosomal 80s-Eef2-Sordarin Comple 3e-39
3jyw_H179 Structure Of The 60s Proteins For Eukaryotic Riboso 5e-38
3zf7_y189 High-resolution Cryo-electron Microscopy Structure 6e-38
4a17_E188 T.Thermophila 60s Ribosomal Subunit In Complex With 1e-31
3j21_F184 Promiscuous Behavior Of Proteins In Archaeal Riboso 3e-22
2cql_A100 Solution Structure Of The N-Terminal Domain Of Huma 1e-19
3g4s_E172 Co-Crystal Structure Of Tiamulin Bound To The Large 2e-14
1s72_E178 Refined Crystal Structure Of The Haloarcula Marismo 2e-14
1ffk_1177 Crystal Structure Of The Large Ribosomal Subunit Fr 2e-14
2gya_E167 Structure Of The 50s Subunit Of A Pre-Translocation 5e-04
1p85_E176 Real Space Refined Coordinates Of The 50s Subunit F 5e-04
1vs6_G177 Crystal Structure Of The Bacterial Ribosome From Es 6e-04
>pdb|3IZR|F Chain F, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 190 Back     alignment and structure 
Iteration: 1

 Score =  276 bits (706), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 130/166 (78%), Positives = 152/166 (91%), Gaps = 4/166 (2%)
Query: 1   MKTILSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
           MKTIL+SETM+IP+GV +++ AK++ VEGPRGKL+R+FKHLNLDF L+     G RKL++
Sbjct: 1   MKTILASETMEIPEGVTVQVAAKVVTVEGPRGKLTRNFKHLNLDFQLLE----GGRKLQV 56
Query: 61  DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNANKSIEIRNF 120
           DAWFG+R+T AAIRTA+SHV NLITGVTKGYRYKMRFVYAHFPINASI N+N +IEIRNF
Sbjct: 57  DAWFGTRRTMAAIRTAISHVQNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNF 116
Query: 121 LGEKKVRKVDMLDGVTVVRSEKVKDELILDGNDIELVSRSAALINQ 166
           LGEKKVRKVDML+GVT++RSEKVKDEL+LDGNDIELVSRSAALINQ
Sbjct: 117 LGEKKVRKVDMLEGVTILRSEKVKDELVLDGNDIELVSRSAALINQ 162
>pdb|2ZKR|EE Chain e, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 192 Back     alignment and structure
>pdb|1S1I|H Chain H, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is In File 1s1h. Length = 191 Back     alignment and structure
>pdb|3JYW|H Chain H, Structure Of The 60s Proteins For Eukaryotic Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 179 Back     alignment and structure
>pdb|3ZF7|YY Chain y, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 189 Back     alignment and structure
>pdb|4A17|E Chain E, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 5s Rrna, 5.8s Rrna And Proteins Of Molecule 2. Length = 188 Back     alignment and structure
>pdb|3J21|F Chain F, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (50s Ribosomal Proteins) Length = 184 Back     alignment and structure
>pdb|2CQL|A Chain A, Solution Structure Of The N-Terminal Domain Of Human Ribosomal Protein L9 Length = 100 Back     alignment and structure
>pdb|3G4S|E Chain E, Co-Crystal Structure Of Tiamulin Bound To The Large Ribosomal Subunit Length = 172 Back     alignment and structure
>pdb|1S72|E Chain E, Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution Length = 178 Back     alignment and structure
>pdb|1FFK|1 Chain 1, Crystal Structure Of The Large Ribosomal Subunit From Haloarcula Marismortui At 2.4 Angstrom Resolution Length = 177 Back     alignment and structure
>pdb|2GYA|E Chain E, Structure Of The 50s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 Length = 167 Back     alignment and structure
>pdb|1P85|E Chain E, Real Space Refined Coordinates Of The 50s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 176 Back     alignment and structure
>pdb|1VS6|G Chain G, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With The Antibiotic Kasugamyin At 3.5a Resolution. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. Length = 177 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query200
3u5e_H191 L8, RP24, YL11, 60S ribosomal protein L9-A; transl 1e-69
3iz5_F190 60S ribosomal protein L9 (L6P); eukaryotic ribosom 8e-67
4a17_E188 RPL9, 60S ribosomal protein L9; eukaryotic ribosom 2e-66
2zkr_e192 60S ribosomal protein L9; protein-RNA complex, 60S 3e-65
1vq8_E178 50S ribosomal protein L6P; ribosome 50S, protein-p 4e-60
2cql_A100 OK/SW-CL.103, 60S ribosomal protein L9; N-terminal 4e-31
3bbo_I223 Ribosomal protein L6; large ribosomal subunit, spi 2e-07
3r8s_G176 50S ribosomal protein L6; protein biosynthesis, RN 6e-07
1rl6_A177 Protein (ribosomal protein L6); RNA-binding protei 2e-06
1nkw_E212 50S ribosomal protein L6; ribosome, large subunit, 2e-06
3v2d_H180 50S ribosomal protein L6; ribosome associated inhi 3e-06
2zjr_E185 50S ribosomal protein L6; ribosome, large ribosoma 3e-06
>3u5e_H L8, RP24, YL11, 60S ribosomal protein L9-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_F 1s1i_H 3izs_F* 3j16_F 3o5h_I 3o58_I 3u5i_H 3jyw_H Length = 191 Back     alignment and structure
 Score =  209 bits (534), Expect = 1e-69
 Identities = 79/169 (46%), Positives = 118/169 (69%), Gaps = 7/169 (4%)

Query: 1   MKTILSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
           MK I + + +++P+GV + I ++I++V GPRG L+++ KH+++ F      +   + +K+
Sbjct: 1   MKYIQTEQQIEVPEGVTVSIKSRIVKVVGPRGTLTKNLKHIDVTF-----TKVNNQLIKV 55

Query: 61  DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASI--GNANKSIEIR 118
               G RK  AA+RT  S V N+ITGVTKGY+YKMR+VYAHFPIN +I   +  K IE+R
Sbjct: 56  AVHNGGRKHVAALRTVKSLVDNMITGVTKGYKYKMRYVYAHFPINVNIVEKDGAKFIEVR 115

Query: 119 NFLGEKKVRKVDMLDGVTVVRSEKVKDELILDGNDIELVSRSAALINQV 167
           NFLG+KK+R V + DGVT+  S  VKDE++L GN +E VS++AA + Q+
Sbjct: 116 NFLGDKKIRNVPVRDGVTIEFSTNVKDEIVLSGNSVEDVSQNAADLQQI 164
>4a17_E RPL9, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_E 4a1c_E 4a1e_E Length = 188 Back     alignment and structure
>2zkr_e 60S ribosomal protein L9; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 192 Back     alignment and structure
>1vq8_E 50S ribosomal protein L6P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.141.1.1 d.141.1.1 PDB: 1vq4_E* 1vq5_E* 1vq6_E* 1vq7_E* 1s72_E* 1vq9_E* 1vqk_E* 1vql_E* 1vqm_E* 1vqn_E* 1vqo_E* 1vqp_E* 1yhq_E* 1yi2_E* 1yij_E* 1yit_E* 1yj9_E* 1yjn_E* 1yjw_E* 2otj_E* ... Length = 178 Back     alignment and structure
>2cql_A OK/SW-CL.103, 60S ribosomal protein L9; N-terminal domain, alpha and beta (A+B), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.141.1.1 Length = 100 Back     alignment and structure
>3bbo_I Ribosomal protein L6; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Length = 223 Back     alignment and structure
>3r8s_G 50S ribosomal protein L6; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_E 1p86_E 2awb_G 2aw4_G 2i2v_G 2j28_G 2i2t_G* 2qao_G* 2qba_G* 2qbc_G* 2qbe_G 2qbg_G 2qbi_G* 2qbk_G* 2qov_G 2qox_G 2qoz_G* 2qp1_G* 2rdo_G 2vhm_G ... Length = 176 Back     alignment and structure
>1rl6_A Protein (ribosomal protein L6); RNA-binding protein, gentamicin resistance, alpha/beta protein; 2.00A {Geobacillus stearothermophilus} SCOP: d.141.1.1 d.141.1.1 PDB: 1giy_H 1ml5_h* 1c04_B 1yl3_H 2b66_H 2b9n_H 2b9p_H 1eg0_J 487d_J Length = 177 Back     alignment and structure
>1nkw_E 50S ribosomal protein L6; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1sm1_E* Length = 212 Back     alignment and structure
>3v2d_H 50S ribosomal protein L6; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_F 2hgj_H 2hgq_H 2hgu_H 1vsa_F 2j03_H 2jl6_H 2jl8_H 2v47_H 2v49_H 2wdi_H 2wdj_H 2wdl_H 2wdn_H 2wh2_H 2wh4_H 2wrj_H 2wrl_H 2wro_H 2wrr_H ... Length = 180 Back     alignment and structure
>2zjr_E 50S ribosomal protein L6; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.141.1.1 d.141.1.1 PDB: 1nwx_E* 1xbp_E* 2zjp_E* 2zjq_E 1nwy_E 3cf5_E* 3dll_E* 3pio_E* 3pip_E* 1pnu_E 1pny_E 1vor_H 1vou_H 1vow_H 1voy_H 1vp0_H Length = 185 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query200
3iz5_F190 60S ribosomal protein L9 (L6P); eukaryotic ribosom 100.0
3u5e_H191 L8, RP24, YL11, 60S ribosomal protein L9-A; transl 100.0
4a17_E188 RPL9, 60S ribosomal protein L9; eukaryotic ribosom 100.0
2zkr_e192 60S ribosomal protein L9; protein-RNA complex, 60S 100.0
1vq8_E178 50S ribosomal protein L6P; ribosome 50S, protein-p 100.0
3j21_F184 50S ribosomal protein L6P; archaea, archaeal, KINK 100.0
3v2d_H180 50S ribosomal protein L6; ribosome associated inhi 100.0
1rl6_A177 Protein (ribosomal protein L6); RNA-binding protei 100.0
1nkw_E212 50S ribosomal protein L6; ribosome, large subunit, 100.0
3r8s_G176 50S ribosomal protein L6; protein biosynthesis, RN 100.0
3bbo_I223 Ribosomal protein L6; large ribosomal subunit, spi 100.0
2zjr_E185 50S ribosomal protein L6; ribosome, large ribosoma 100.0
2cql_A100 OK/SW-CL.103, 60S ribosomal protein L9; N-terminal 99.94
2bol_A314 TSP36, small heat shock protein; A-crystallin, mol 83.59
>3u5e_H L8, RP24, YL11, 60S ribosomal protein L9-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_F 1s1i_H 3izs_F* 3j16_F 3o5h_I 3o58_I 3u5i_H 4b6a_H 3jyw_H Back     alignment and structure
>4a17_E RPL9, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_E 4a1c_E 4a1e_E Back     alignment and structure
>2zkr_e 60S ribosomal protein L9; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Back     alignment and structure
>1vq8_E 50S ribosomal protein L6P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.141.1.1 d.141.1.1 PDB: 1vq4_E* 1vq5_E* 1vq6_E* 1vq7_E* 1s72_E* 1vq9_E* 1vqk_E* 1vql_E* 1vqm_E* 1vqn_E* 1vqo_E* 1vqp_E* 1yhq_E* 1yi2_E* 1yij_E* 1yit_E* 1yj9_E* 1yjn_E* 1yjw_E* 2otj_E* ... Back     alignment and structure
>3j21_F 50S ribosomal protein L6P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>3v2d_H 50S ribosomal protein L6; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_F 2hgj_H 2hgq_H 2hgu_H 1vsa_F 2j03_H 2jl6_H 2jl8_H 2v47_H 2v49_H 2wdi_H 2wdj_H 2wdl_H 2wdn_H 2wh2_H 2wh4_H 2wrj_H 2wrl_H 2wro_H 2wrr_H ... Back     alignment and structure
>1rl6_A Protein (ribosomal protein L6); RNA-binding protein, gentamicin resistance, alpha/beta protein; 2.00A {Geobacillus stearothermophilus} SCOP: d.141.1.1 d.141.1.1 PDB: 1giy_H 1ml5_h* 1c04_B 1yl3_H 2b66_H 2b9n_H 2b9p_H 1eg0_J 487d_J Back     alignment and structure
>1nkw_E 50S ribosomal protein L6; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1sm1_E* Back     alignment and structure
>3r8s_G 50S ribosomal protein L6; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_E 1p86_E 2awb_G 2aw4_G 2i2v_G 2j28_G 2i2t_G* 2qao_G* 2qba_G* 2qbc_G* 2qbe_G 2qbg_G 2qbi_G* 2qbk_G* 2qov_G 2qox_G 2qoz_G* 2qp1_G* 2rdo_G 2vhm_G ... Back     alignment and structure
>3bbo_I Ribosomal protein L6; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Back     alignment and structure
>2zjr_E 50S ribosomal protein L6; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.141.1.1 d.141.1.1 PDB: 1nwx_E* 1xbp_E* 2zjp_E* 2zjq_E 1nwy_E 3cf5_E* 3dll_E* 3pio_E* 3pip_E* 1pnu_E 1pny_E 1vor_H 1vou_H 1vow_H 1voy_H 1vp0_H Back     alignment and structure
>2cql_A OK/SW-CL.103, 60S ribosomal protein L9; N-terminal domain, alpha and beta (A+B), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.141.1.1 Back     alignment and structure
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 200
d1vqoe293 d.141.1.1 (E:80-172) Ribosomal protein L6 {Archaeo 2e-30
d2cqla187 d.141.1.1 (A:1-87) Ribosomal protein L6 {Human (Ho 2e-23
d1vqoe179 d.141.1.1 (E:1-79) Ribosomal protein L6 {Archaeon 6e-14
d2zjre278 d.141.1.1 (E:5-82) Ribosomal protein L6 {Deinococc 9e-14
d2j01h171 d.141.1.1 (H:12-82) Ribosomal protein L6 {Thermus 9e-14
d2qamg181 d.141.1.1 (G:1-81) Ribosomal protein L6 {Escherich 7e-13
d1rl6a175 d.141.1.1 (A:7-81) Ribosomal protein L6 {Bacillus 1e-12
>d1vqoe2 d.141.1.1 (E:80-172) Ribosomal protein L6 {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 93 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L6
superfamily: Ribosomal protein L6
family: Ribosomal protein L6
domain: Ribosomal protein L6
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score =  105 bits (264), Expect = 2e-30
 Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 5/76 (6%)

Query: 91  YRYKMRFVYAHFPINASIGNANKSIEIRNFLGEKKVRKVDMLDGVTVVRSEKVKDELILD 150
           + Y M   Y+HFP+  ++      + I NFLGEK  R+  +     V   E   +EL + 
Sbjct: 1   WEYGMEVFYSHFPMQVNVE--GDEVVIENFLGEKAPRRTTIHGDTDV---EIDGEELTVS 55

Query: 151 GNDIELVSRSAALINQ 166
           G DIE V ++AA I Q
Sbjct: 56  GPDIEAVGQTAADIEQ 71
>d2cqla1 d.141.1.1 (A:1-87) Ribosomal protein L6 {Human (Homo sapiens) [TaxId: 9606]} Length = 87 Back     information, alignment and structure
>d1vqoe1 d.141.1.1 (E:1-79) Ribosomal protein L6 {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 79 Back     information, alignment and structure
>d2zjre2 d.141.1.1 (E:5-82) Ribosomal protein L6 {Deinococcus radiodurans [TaxId: 1299]} Length = 78 Back     information, alignment and structure
>d2j01h1 d.141.1.1 (H:12-82) Ribosomal protein L6 {Thermus thermophilus [TaxId: 274]} Length = 71 Back     information, alignment and structure
>d2qamg1 d.141.1.1 (G:1-81) Ribosomal protein L6 {Escherichia coli [TaxId: 562]} Length = 81 Back     information, alignment and structure
>d1rl6a1 d.141.1.1 (A:7-81) Ribosomal protein L6 {Bacillus stearothermophilus [TaxId: 1422]} Length = 75 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query200
d2cqla187 Ribosomal protein L6 {Human (Homo sapiens) [TaxId: 99.94
d2qamg181 Ribosomal protein L6 {Escherichia coli [TaxId: 562 99.92
d1vqoe179 Ribosomal protein L6 {Archaeon Haloarcula marismor 99.91
d1rl6a289 Ribosomal protein L6 {Bacillus stearothermophilus 99.91
d1rl6a175 Ribosomal protein L6 {Bacillus stearothermophilus 99.91
d2j01h289 Ribosomal protein L6 {Thermus thermophilus [TaxId: 99.9
d2zjre190 Ribosomal protein L6 {Deinococcus radiodurans [Tax 99.9
d2zjre278 Ribosomal protein L6 {Deinococcus radiodurans [Tax 99.89
d1vqoe293 Ribosomal protein L6 {Archaeon Haloarcula marismor 99.89
d2qamg295 Ribosomal protein L6 {Escherichia coli [TaxId: 562 99.89
d2j01h171 Ribosomal protein L6 {Thermus thermophilus [TaxId: 99.85
>d2cqla1 d.141.1.1 (A:1-87) Ribosomal protein L6 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L6
superfamily: Ribosomal protein L6
family: Ribosomal protein L6
domain: Ribosomal protein L6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.1e-27  Score=173.02  Aligned_cols=87  Identities=48%  Similarity=0.917  Sum_probs=79.2

Q ss_pred             CcccccceeeEcCCCcEEEEeCcEEEEEcCCcEEEEEeeCCcEEEEEeecCcCCccEEEEEecCCChhhhhhhHhHHHHh
Q 029052            1 MKTILSSETMDIPDGVKIKINAKIIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHV   80 (200)
Q Consensus         1 mks~igk~~I~IP~~V~V~i~~~~v~VkGp~G~L~~~l~~~~v~i~~~~~~~~~~~~l~i~~~~~~kk~ra~~GT~rslI   80 (200)
                      |+++++++||+||+||+|+++++.|+|+||+|+|+++|+|+.+++....++.   +.+.++.+.++++++|+|||+||||
T Consensus         1 M~~i~~~~~I~IP~gV~v~i~~~~i~vkGpkG~L~~~~~~~~v~~~~~~~~~---~~i~v~~~~~~k~~~a~~GT~rslI   77 (87)
T d2cqla1           1 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKK---KRLRVDKWWGNRKELATVRTICSHV   77 (87)
T ss_dssp             CCCCCCCEEECCCSSCEEEEETTEEEEEETTEEEEEECCSSCCEEEEECSSS---CEEEEECCSSSTHHHHHHHHHHHHH
T ss_pred             CcEeecCCcEECCCCCEEEEeCCEEEEEcCCcEEEEEecCCcceEEEeeccc---cEEEeecCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999987777776532221   6899999999999999999999999


Q ss_pred             hheeeeeccc
Q 029052           81 GNLITGVTKG   90 (200)
Q Consensus        81 ~NmI~GVt~G   90 (200)
                      +|||+|||+|
T Consensus        78 ~Nmi~GVt~G   87 (87)
T d2cqla1          78 QNMIKGVTLG   87 (87)
T ss_dssp             HHHHHHHHTS
T ss_pred             HhheeeeeCC
Confidence            9999999998
>d2qamg1 d.141.1.1 (G:1-81) Ribosomal protein L6 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vqoe1 d.141.1.1 (E:1-79) Ribosomal protein L6 {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
>d1rl6a2 d.141.1.1 (A:82-170) Ribosomal protein L6 {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1rl6a1 d.141.1.1 (A:7-81) Ribosomal protein L6 {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d2j01h2 d.141.1.1 (H:83-171) Ribosomal protein L6 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2zjre1 d.141.1.1 (E:83-172) Ribosomal protein L6 {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d2zjre2 d.141.1.1 (E:5-82) Ribosomal protein L6 {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d1vqoe2 d.141.1.1 (E:80-172) Ribosomal protein L6 {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
>d2qamg2 d.141.1.1 (G:82-176) Ribosomal protein L6 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2j01h1 d.141.1.1 (H:12-82) Ribosomal protein L6 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure