Citrus Sinensis ID: 029062

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------20
MMLVTVALVKITYKKSLIKLLRFIDKYNLPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPREYAKKQQN
cHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEcccccccHHHHccccccccEEEEccHHHHHHHHHHHHHHcccccccEEEEEEcccccccccccHHHHHHHHHHHHccccccEEEEEEccccccccccHHHHHHHHHHHHHHHHHHcccccccEEEccccHHHHHHHHccccEEEEcccccccccccccccc
ccEEEHHEHcHHHHHHHHHHHHHHHHcccccccEEEEEccccccccHHHHHccccccEEEEccHHHHHHHHHHHcccccccccEEEEEEEEccccccccccHHHHHHHHHHHHHHccccEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHccccccccEEccccccHHHHHHHHcccEEEEEHHHcccccccccccc
MMLVTVALVKITYKKSLIKLLRFIDkynlpedikwHFVGhlqsnkaktllggvpnldmvegvgnEKIANHLDKAVSNLGRKPLKVLVQVNTsgeesksgidpssclgivehvrlrcpnlefsglmtigmpdytstpeNFRTLLNCRAEVCKALGmaedqcelsmgmsgDFEQAIEMGSTsvrigstifgpreyakkqqn
MMLVTVALVKITYKKSLIKLLRFIDKYNLPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKavsnlgrkpLKVLVQVNtsgeesksgidpsscLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRigstifgpreyakkqqn
MMLVTVALVKITYKKSLIKLLRFIDKYNLPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPREYAKKQQN
**LVTVALVKITYKKSLIKLLRFIDKYNLPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQV**************SCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRTLLNCRAEVCKALGMAEDQCELSM******************I***I************
MMLVTVALVKITYKKSLIKLLRFIDKYNLPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIF***********
MMLVTVALVKITYKKSLIKLLRFIDKYNLPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVN***********PSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPREYAKKQQN
MMLVTVALVKITYKKSLIKLLRFIDKYNLPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPRE*******
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MMLVTVALVKITYKKSLIKLLRFIDKYNLPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPREYAKKQQN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query199 2.2.26 [Sep-21-2011]
O94903275 Proline synthase co-trans yes no 0.824 0.596 0.538 5e-44
Q9Z2Y8274 Proline synthase co-trans yes no 0.824 0.598 0.526 2e-43
Q5R4Z1275 Proline synthase co-trans yes no 0.844 0.610 0.526 2e-42
Q3T0G5273 Proline synthase co-trans yes no 0.824 0.600 0.520 2e-42
Q1ZXI6255 Proline synthase co-trans yes no 0.829 0.647 0.480 1e-36
P52057244 Proline synthase co-trans yes no 0.824 0.672 0.476 4e-33
Q9KUQ4236 UPF0001 protein VC_0461 O yes no 0.874 0.737 0.408 4e-29
P52055233 UPF0001 protein in pilT-p N/A no 0.829 0.708 0.416 3e-26
Q9P6Q1237 UPF0001 protein C644.09 O yes no 0.839 0.704 0.412 2e-25
Q9CPD5233 UPF0001 protein PM0112 OS yes no 0.879 0.751 0.362 3e-25
>sp|O94903|PROSC_HUMAN Proline synthase co-transcribed bacterial homolog protein OS=Homo sapiens GN=PROSC PE=1 SV=1 Back     alignment and function desciption
 Score =  177 bits (448), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 91/169 (53%), Positives = 120/169 (71%), Gaps = 5/169 (2%)

Query: 32  DIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGR-KPLKVLVQVN 90
           +IKWHF+GHLQ      L+  VPNL M+E V + K+A+ ++ +    G  + LKV+VQ+N
Sbjct: 88  EIKWHFIGHLQKQNVNKLMA-VPNLFMLETVDSVKLADKVNSSWQRKGSPERLKVMVQIN 146

Query: 91  TSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGM--PDYTSTPE-NFRTLLNCRA 147
           TSGEESK G+ PS  + IVEH+  +CPNLEF GLMTIG    D +  P  +F+ LL+ R 
Sbjct: 147 TSGEESKHGLPPSETIAIVEHINAKCPNLEFVGLMTIGSFGHDLSQGPNPDFQLLLSLRE 206

Query: 148 EVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPREYAKK 196
           E+CK L +  DQ ELSMGMS DF+ A+E+GST+VRIGSTIFG R+Y+KK
Sbjct: 207 ELCKKLNIPADQVELSMGMSADFQHAVEVGSTNVRIGSTIFGERDYSKK 255

Homo sapiens (taxid: 9606)
>sp|Q9Z2Y8|PROSC_MOUSE Proline synthase co-transcribed bacterial homolog protein OS=Mus musculus GN=Prosc PE=1 SV=1 Back     alignment and function description
>sp|Q5R4Z1|PROSC_PONAB Proline synthase co-transcribed bacterial homolog protein OS=Pongo abelii GN=PROSC PE=2 SV=1 Back     alignment and function description
>sp|Q3T0G5|PROSC_BOVIN Proline synthase co-transcribed bacterial homolog protein OS=Bos taurus GN=PROSC PE=2 SV=1 Back     alignment and function description
>sp|Q1ZXI6|PROSC_DICDI Proline synthase co-transcribed bacterial homolog protein OS=Dictyostelium discoideum GN=prosc PE=3 SV=2 Back     alignment and function description
>sp|P52057|PROSC_CAEEL Proline synthase co-transcribed bacterial homolog protein OS=Caenorhabditis elegans GN=F09E5.8 PE=3 SV=1 Back     alignment and function description
>sp|Q9KUQ4|Y461_VIBCH UPF0001 protein VC_0461 OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=VC_0461 PE=3 SV=1 Back     alignment and function description
>sp|P52055|YPI1_VIBAL UPF0001 protein in pilT-proC intergenic region OS=Vibrio alginolyticus PE=3 SV=1 Back     alignment and function description
>sp|Q9P6Q1|YKC9_SCHPO UPF0001 protein C644.09 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC644.09 PE=3 SV=1 Back     alignment and function description
>sp|Q9CPD5|Y112_PASMU UPF0001 protein PM0112 OS=Pasteurella multocida (strain Pm70) GN=PM0112 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query199
255577143245 proline synthetase associated protein, p 0.884 0.718 0.802 2e-80
225460901245 PREDICTED: proline synthase co-transcrib 0.864 0.702 0.808 2e-79
147861921245 hypothetical protein VITISV_024616 [Viti 0.864 0.702 0.808 2e-79
449463228245 PREDICTED: proline synthase co-transcrib 0.889 0.722 0.786 6e-79
449503195245 PREDICTED: proline synthase co-transcrib 0.889 0.722 0.786 8e-79
240256085244 putative pyridoxal phosphate-dependent e 0.874 0.713 0.817 3e-78
356527075244 PREDICTED: proline synthase co-transcrib 0.849 0.692 0.792 8e-78
356567318244 PREDICTED: proline synthase co-transcrib 0.849 0.692 0.804 2e-77
297799306244 AT4g26860/F10M23_200 [Arabidopsis lyrata 0.874 0.713 0.805 3e-77
357126794249 PREDICTED: proline synthase co-transcrib 0.889 0.710 0.758 3e-76
>gi|255577143|ref|XP_002529455.1| proline synthetase associated protein, putative [Ricinus communis] gi|223531071|gb|EEF32921.1| proline synthetase associated protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  304 bits (778), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 142/177 (80%), Positives = 154/177 (87%), Gaps = 1/177 (0%)

Query: 24  IDKY-NLPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKP 82
           +DK   LPEDI+WHF+GHLQSNK KTLL GVPNL MV+GV NEK+AN LD+ VS LGR P
Sbjct: 69  VDKAPQLPEDIEWHFIGHLQSNKVKTLLAGVPNLAMVQGVDNEKVANVLDRVVSTLGRNP 128

Query: 83  LKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRTL 142
           LKV VQVNTSGE SKSGI+PSSC+ + EHV+LRCPNL  SGLMTIGMPDYTSTPENFR L
Sbjct: 129 LKVFVQVNTSGEASKSGIEPSSCVALAEHVKLRCPNLVLSGLMTIGMPDYTSTPENFRKL 188

Query: 143 LNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPREYAKKQQN 199
            NCR EVCKALGMAED CELSMGMSGDFEQAIEMGST+VR+GSTIFGPREY KKQ N
Sbjct: 189 SNCRLEVCKALGMAEDHCELSMGMSGDFEQAIEMGSTNVRVGSTIFGPREYPKKQSN 245

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225460901|ref|XP_002278892.1| PREDICTED: proline synthase co-transcribed bacterial homolog protein [Vitis vinifera] gi|297737470|emb|CBI26671.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147861921|emb|CAN80917.1| hypothetical protein VITISV_024616 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449463228|ref|XP_004149336.1| PREDICTED: proline synthase co-transcribed bacterial homolog protein-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449503195|ref|XP_004161881.1| PREDICTED: proline synthase co-transcribed bacterial homolog protein-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|240256085|ref|NP_567760.4| putative pyridoxal phosphate-dependent enzyme, YBL036C type [Arabidopsis thaliana] gi|14030629|gb|AAK52989.1|AF375405_1 AT4g26860/F10M23_200 [Arabidopsis thaliana] gi|17978899|gb|AAL47419.1| AT4g26860/F10M23_200 [Arabidopsis thaliana] gi|21536981|gb|AAM61322.1| putative proline synthetase associated protein [Arabidopsis thaliana] gi|332659861|gb|AEE85261.1| putative pyridoxal phosphate-dependent enzyme, YBL036C type [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356527075|ref|XP_003532139.1| PREDICTED: proline synthase co-transcribed bacterial homolog protein-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|356567318|ref|XP_003551868.1| PREDICTED: proline synthase co-transcribed bacterial homolog protein-like [Glycine max] Back     alignment and taxonomy information
>gi|297799306|ref|XP_002867537.1| AT4g26860/F10M23_200 [Arabidopsis lyrata subsp. lyrata] gi|297313373|gb|EFH43796.1| AT4g26860/F10M23_200 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|357126794|ref|XP_003565072.1| PREDICTED: proline synthase co-transcribed bacterial homolog protein-like [Brachypodium distachyon] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query199
TAIR|locus:2008910257 AT1G11930 [Arabidopsis thalian 0.844 0.653 0.723 1.6e-63
UNIPROTKB|Q0DKP7214 Os05g0150000 "Os05g0150000 pro 0.753 0.700 0.735 1.4e-57
UNIPROTKB|A8HP79251 CHLREDRAFT_116897 "Predicted p 0.844 0.669 0.6 2.4e-51
UNIPROTKB|O94903275 PROSC "Proline synthase co-tra 0.829 0.6 0.543 1.5e-42
MGI|MGI:1891207274 Prosc "proline synthetase co-t 0.829 0.602 0.532 8.4e-42
RGD|1308962275 Prosc "proline synthetase co-t 0.829 0.6 0.514 3.6e-41
UNIPROTKB|Q3T0G5273 PROSC "Proline synthase co-tra 0.829 0.604 0.526 9.6e-41
UNIPROTKB|F1RX84275 PROSC "Uncharacterized protein 0.829 0.6 0.538 1.6e-40
UNIPROTKB|E1C516276 PROSC "Uncharacterized protein 0.829 0.597 0.520 9.9e-39
DICTYBASE|DDB_G0278713255 prosc "alanine racemase N-term 0.829 0.647 0.491 4.9e-37
TAIR|locus:2008910 AT1G11930 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 648 (233.2 bits), Expect = 1.6e-63, P = 1.6e-63
 Identities = 123/170 (72%), Positives = 142/170 (83%)

Query:    29 LPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQ 88
             LPEDI+WHF+G+LQSNK K LL GVPNL  VE V +EKIAN LD+ V N+GRKPLKV VQ
Sbjct:    88 LPEDIEWHFIGNLQSNKVKPLLSGVPNLVTVESVDDEKIANMLDRVVGNIGRKPLKVFVQ 147

Query:    89 VNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRTLLNCRAE 148
             VNTSGE+SK G++PS C+G+ +HV+  C NLEFSGLMTIGM DYTSTPENF+ L  CR+E
Sbjct:   148 VNTSGEDSKFGVEPSGCVGLAKHVKEACSNLEFSGLMTIGMADYTSTPENFKLLAKCRSE 207

Query:   149 VCKALGMAEDQCELSMGMSGDFEQA--IEMGSTSVRIGSTIFGPREYAKK 196
             VCK LG+ E+QCELSMGMSGDFE A  IE+GST+VRIGSTIFG REY KK
Sbjct:   208 VCKELGIPEEQCELSMGMSGDFELALQIELGSTNVRIGSTIFGAREYPKK 257
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0030170 "pyridoxal phosphate binding" evidence=ISS;IBA
GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA
UNIPROTKB|Q0DKP7 Os05g0150000 "Os05g0150000 protein" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|A8HP79 CHLREDRAFT_116897 "Predicted protein" [Chlamydomonas reinhardtii (taxid:3055)] Back     alignment and assigned GO terms
UNIPROTKB|O94903 PROSC "Proline synthase co-transcribed bacterial homolog protein" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1891207 Prosc "proline synthetase co-transcribed" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1308962 Prosc "proline synthetase co-transcribed homolog (bacterial)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q3T0G5 PROSC "Proline synthase co-transcribed bacterial homolog protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1RX84 PROSC "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E1C516 PROSC "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0278713 prosc "alanine racemase N-terminal domain-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q3T0G5PROSC_BOVINNo assigned EC number0.52070.82410.6007yesno
Q5R4Z1PROSC_PONABNo assigned EC number0.52600.84420.6109yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00027282001
SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (245 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00000690001
RecName- Full=Pyrroline-5-carboxylate reductase; EC=1.5.1.2; (276 aa)
•       0.780
GSVIVG00032279001
SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (162 aa)
•     • 0.579
GSVIVG00034871001
SubName- Full=Putative uncharacterized protein (Chromosome chr4 scaffold_73, whole genome shotg [...] (128 aa)
•       0.531
GSVIVG00027244001
SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (424 aa)
•     • 0.481
GSVIVG00010463001
SubName- Full=Chromosome chr17 scaffold_263, whole genome shotgun sequence; (473 aa)
•     • 0.477
GSVIVG00026904001
SubName- Full=Chromosome chr15 scaffold_40, whole genome shotgun sequence; (363 aa)
•     • 0.467
GSVIVG00019784001
SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (925 aa)
•     • 0.458
GSVIVG00032399001
SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (228 aa)
•     • 0.435
GSVIVG00015501001
SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (385 aa)
•       0.432
GSVIVG00000431001
SubName- Full=Chromosome chr2 scaffold_105, whole genome shotgun sequence; (510 aa)
•       0.432

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query199
cd06822227 cd06822, PLPDE_III_YBL036c_euk, Pyridoxal 5-phosph 6e-98
cd00635222 cd00635, PLPDE_III_YBL036c_like, Type III Pyridoxa 3e-58
COG0325228 COG0325, COG0325, Predicted enzyme with a TIM-barr 4e-56
cd06824224 cd06824, PLPDE_III_Yggs_like, Pyridoxal 5-phosphat 1e-45
TIGR00044229 TIGR00044, TIGR00044, pyridoxal phosphate enzyme, 3e-38
pfam01168217 pfam01168, Ala_racemase_N, Alanine racemase, N-ter 8e-29
cd06808211 cd06808, PLPDE_III, Type III Pyridoxal 5-phosphate 2e-09
COG3457 353 COG3457, COG3457, Predicted amino acid racemase [A 0.002
>gnl|CDD|143496 cd06822, PLPDE_III_YBL036c_euk, Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Eukaryotic YBL036c-like proteins Back     alignment and domain information 
 Score =  282 bits (725), Expect = 6e-98
 Identities = 104/172 (60%), Positives = 128/172 (74%), Gaps = 6/172 (3%)

Query: 23  FIDKYN-LPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLG-R 80
            I+K   LP DIKWHF+GHLQSNK K LL  VPNL MVE V +EK+A+ L+KA   LG R
Sbjct: 57  LIEKAPDLPIDIKWHFIGHLQSNKVKKLLK-VPNLYMVETVDSEKLADKLNKAWEKLGER 115

Query: 81  KPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYT---STPE 137
           +PLKV+VQVNTSGEESKSG++PS  + +V+H+   CPNL+FSGLMTIG   Y+       
Sbjct: 116 EPLKVMVQVNTSGEESKSGLEPSEAVELVKHIIEECPNLKFSGLMTIGSFGYSLSSGPNP 175

Query: 138 NFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFG 189
           +F  L++CR +VC+ LG+  D  ELSMGMS DFE AIEMGST+VR+GS IFG
Sbjct: 176 DFLCLVDCRKKVCEKLGINPDDLELSMGMSADFEHAIEMGSTNVRVGSAIFG 227

This subfamily contains mostly uncharacterized eukaryotic proteins with similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity. Some members of this subfamily are also referred to as PROSC (Proline synthetase co-transcribed bacterial homolog). Length = 227
>gnl|CDD|143483 cd00635, PLPDE_III_YBL036c_like, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins Back     alignment and domain information
>gnl|CDD|223402 COG0325, COG0325, Predicted enzyme with a TIM-barrel fold [General function prediction only] Back     alignment and domain information
>gnl|CDD|143497 cd06824, PLPDE_III_Yggs_like, Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Yggs-like proteins Back     alignment and domain information
>gnl|CDD|129155 TIGR00044, TIGR00044, pyridoxal phosphate enzyme, YggS family Back     alignment and domain information
>gnl|CDD|216340 pfam01168, Ala_racemase_N, Alanine racemase, N-terminal domain Back     alignment and domain information
>gnl|CDD|143484 cd06808, PLPDE_III, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Back     alignment and domain information
>gnl|CDD|225988 COG3457, COG3457, Predicted amino acid racemase [Amino acid transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 199
COG0325228 Predicted enzyme with a TIM-barrel fold [General f 100.0
cd06822227 PLPDE_III_YBL036c_euk Pyridoxal 5-phosphate (PLP)- 100.0
KOG3157244 consensus Proline synthetase co-transcribed protei 100.0
TIGR00044229 pyridoxal phosphate enzyme, YggS family. Members o 100.0
cd06824224 PLPDE_III_Yggs_like Pyridoxal 5-phosphate (PLP)-bi 100.0
cd00635222 PLPDE_III_YBL036c_like Type III Pyridoxal 5-phosph 99.98
PF01168218 Ala_racemase_N: Alanine racemase, N-terminal domai 99.97
cd06821 361 PLPDE_III_D-TA Type III Pyridoxal 5-phosphate (PLP 99.95
cd06815 353 PLPDE_III_AR_like_1 Type III Pyridoxal 5-phosphate 99.94
cd06820 353 PLPDE_III_LS_D-TA_like Type III Pyridoxal 5-phosph 99.94
cd00430 367 PLPDE_III_AR Type III Pyridoxal 5-phosphate (PLP)- 99.92
TIGR00492 367 alr alanine racemase. This enzyme interconverts L- 99.92
cd06817 389 PLPDE_III_DSD Type III Pyridoxal 5-phosphate (PLP) 99.92
cd07376 345 PLPDE_III_DSD_D-TA_like Type III Pyridoxal 5-phosp 99.92
cd06819 358 PLPDE_III_LS_D-TA Type III Pyridoxal 5-phosphate ( 99.9
cd06814 379 PLPDE_III_DSD_D-TA_like_3 Type III Pyridoxal 5-pho 99.9
cd06818 382 PLPDE_III_cryptic_DSD Type III Pyridoxal 5-phospha 99.89
PRK00053 363 alr alanine racemase; Reviewed 99.88
cd06811 382 PLPDE_III_yhfX_like Type III Pyridoxal 5-phosphate 99.87
PRK13340 406 alanine racemase; Reviewed 99.86
cd06808211 PLPDE_III Type III Pyridoxal 5-phosphate (PLP)-Dep 99.86
cd06826 365 PLPDE_III_AR2 Type III Pyridoxal 5-phosphate (PLP) 99.83
cd06812 374 PLPDE_III_DSD_D-TA_like_1 Type III Pyridoxal 5-pho 99.83
cd06825 368 PLPDE_III_VanT Type III Pyridoxal 5-phosphate (PLP 99.83
PRK03646 355 dadX alanine racemase; Reviewed 99.79
cd06813 388 PLPDE_III_DSD_D-TA_like_2 Type III Pyridoxal 5-pho 99.79
PRK11930 822 putative bifunctional UDP-N-acetylmuramoyl-tripept 99.78
cd06827 354 PLPDE_III_AR_proteobact Type III Pyridoxal 5-phosp 99.77
COG3616 368 Predicted amino acid aldolase or racemase [Amino a 99.75
COG0787 360 Alr Alanine racemase [Cell envelope biogenesis, ou 99.75
cd06810 368 PLPDE_III_ODC_DapDC_like Type III Pyridoxal 5-phos 99.44
cd06839 382 PLPDE_III_Btrk_like Type III Pyridoxal 5-phosphate 99.42
COG3457 353 Predicted amino acid racemase [Amino acid transpor 99.4
cd06842 423 PLPDE_III_Y4yA_like Type III Pyridoxal 5-phosphate 99.38
cd06828 373 PLPDE_III_DapDC Type III Pyridoxal 5-phosphate (PL 99.36
TIGR01048 417 lysA diaminopimelate decarboxylase. This family co 99.36
cd06843 377 PLPDE_III_PvsE_like Type III Pyridoxal 5-phosphate 99.29
PLN02537 410 diaminopimelate decarboxylase 99.26
cd06841 379 PLPDE_III_MccE_like Type III Pyridoxal 5-phosphate 99.16
TIGR03099 398 dCO2ase_PEP1 pyridoxal-dependent decarboxylase, ex 99.14
COG0019 394 LysA Diaminopimelate decarboxylase [Amino acid tra 98.95
cd06830 409 PLPDE_III_ADC Type III Pyridoxal 5-phosphate (PLP) 98.88
cd00622 362 PLPDE_III_ODC Type III Pyridoxal 5-phosphate (PLP) 98.86
PF02784251 Orn_Arg_deC_N: Pyridoxal-dependent decarboxylase, 98.81
PRK11165 420 diaminopimelate decarboxylase; Provisional 98.7
cd06836 379 PLPDE_III_ODC_DapDC_like_1 Type III Pyridoxal 5-ph 98.52
PRK05354 634 arginine decarboxylase; Provisional 98.51
PLN02439 559 arginine decarboxylase 98.5
TIGR01273 624 speA arginine decarboxylase, biosynthetic. A disti 98.49
cd06831 394 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosph 98.35
cd06840 368 PLPDE_III_Bif_AspK_DapDC Type III Pyridoxal 5-phos 98.15
TIGR01047 380 nspC carboxynorspermidine decarboxylase. This prot 98.11
PRK08961 861 bifunctional aspartate kinase/diaminopimelate deca 97.86
cd06829 346 PLPDE_III_CANSDC Type III Pyridoxal 5-phosphate (P 97.28
KOG0622 448 consensus Ornithine decarboxylase [Amino acid tran 97.25
PRK08091228 ribulose-phosphate 3-epimerase; Validated 95.38
COG0036220 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate 94.91
PRK14057254 epimerase; Provisional 93.75
PF00834201 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase fam 93.64
PRK08745223 ribulose-phosphate 3-epimerase; Provisional 93.21
PRK08005210 epimerase; Validated 91.51
COG1166 652 SpeA Arginine decarboxylase (spermidine biosynthes 88.5
PRK08883220 ribulose-phosphate 3-epimerase; Provisional 87.91
COG0167310 PyrD Dihydroorotate dehydrogenase [Nucleotide tran 87.6
PRK09722229 allulose-6-phosphate 3-epimerase; Provisional 84.99
KOG3111224 consensus D-ribulose-5-phosphate 3-epimerase [Carb 81.11
>COG0325 Predicted enzyme with a TIM-barrel fold [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=2.3e-54  Score=354.16  Aligned_cols=181  Identities=41%  Similarity=0.609  Sum_probs=167.5

Q ss_pred             hhHHHHHHHhc-----cCCcHHHHHHhh-cCCC--CceeeeecccchHHHHhHhccCCCccEEEecCcHHHHHHHHHHHH
Q 029062            5 TVALVKITYKK-----SLIKLLRFIDKY-NLPE--DIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVS   76 (199)
Q Consensus         5 ~~~~~~~~~~~-----~~n~~qE~~~k~-~~~~--~i~~h~IG~lq~~ki~~l~~~~~~~~~i~sVDs~~~a~~l~~~a~   76 (199)
                      .++-+.+.|++     ||||+||+.+|+ .|++  +|.|||||+||+||++.++   ++++++|||||++.|.+|++++.
T Consensus        38 ~~~~I~~~~~aG~r~fGENrvQe~~~K~~~l~~~~~i~WHfIG~LQsNK~k~v~---~~~~~ihSlDr~klA~~l~kra~  114 (228)
T COG0325          38 PAEDIREAYEAGQRHFGENRVQEALDKIEALKDLPDIEWHFIGPLQSNKVKLVA---ENFDWIHSLDRLKLAKELNKRAL  114 (228)
T ss_pred             CHHHHHHHHHcCChhhcchHHHHHHHHHHhcCcCCCeEEEEechhhhhHHHHHH---hhcceeeecCHHHHHHHHHHHHH
Confidence            45677888888     999999999999 8876  4999999999999999999   56999999999999999999988


Q ss_pred             hcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCCCeeEEEEEeeCCCCCC--ChHHHHHHHHHHHHHHHHHhC
Q 029062           77 NLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYT--STPENFRTLLNCRAEVCKALG  154 (199)
Q Consensus        77 ~~g~~~i~VllqIntg~e~~R~Gv~~~~~~~l~~~i~~~~~~L~l~GLmt~~~~~~~--~~~~~f~~l~~~~~~l~~~~g  154 (199)
                      ..++ +++|+||||+++|.+|+|++|+++.+++..+. .+|+|+++|||||+|.+.+  +...+|+.++++++.+.+++ 
T Consensus       115 ~~~~-~l~v~iQVNi~~E~sK~G~~~~e~~~~~~~~~-~~~~L~l~GLM~ipp~~~d~~~~~~~F~~l~~l~~~l~~~~-  191 (228)
T COG0325         115 ELPK-PLNVLIQVNISGEESKSGVPPEELDELAQEVQ-ELPNLELRGLMTIPPLTDDPEEIFAVFRKLRKLFDELKAKY-  191 (228)
T ss_pred             hCCC-CceEEEEEecCCccccCCCCHHHHHHHHHHHH-hCCCCeEeEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHhc-
Confidence            8886 89999999999999999999999999999999 9999999999999998654  46789999999999999874 


Q ss_pred             CCCCCCEEEecCCcCHHHHHHcCCCEEecCccccCCCcc
Q 029062          155 MAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPREY  193 (199)
Q Consensus       155 ~~~~~~~lS~Gms~d~~~a~~~g~t~VR~Gs~ifgd~~~  193 (199)
                      .  ++.+||||||+||++||++|+|+||+||+|||.|+|
T Consensus       192 ~--~~~~LSMGMS~D~e~AI~~GaT~VRIGtaiFg~r~~  228 (228)
T COG0325         192 P--PIDELSMGMSNDYEIAIAEGATMVRIGTAIFGARDY  228 (228)
T ss_pred             C--CCCeecCcCcccHHHHHHcCCCEEEEcHHhhCCCCC
Confidence            3  379999999999999999999999999999999987

>cd06822 PLPDE_III_YBL036c_euk Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Eukaryotic YBL036c-like proteins Back     alignment and domain information
>KOG3157 consensus Proline synthetase co-transcribed protein [General function prediction only] Back     alignment and domain information
>TIGR00044 pyridoxal phosphate enzyme, YggS family Back     alignment and domain information
>cd06824 PLPDE_III_Yggs_like Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Yggs-like proteins Back     alignment and domain information
>cd00635 PLPDE_III_YBL036c_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins Back     alignment and domain information
>PF01168 Ala_racemase_N: Alanine racemase, N-terminal domain; InterPro: IPR001608 Alanine racemase plays a role in providing the D-alanine required for cell wall biosynthesis by isomerising L-alanine to D-alanine Back     alignment and domain information
>cd06821 PLPDE_III_D-TA Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme D-Threonine Aldolase Back     alignment and domain information
>cd06815 PLPDE_III_AR_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase-like 1 Back     alignment and domain information
>cd06820 PLPDE_III_LS_D-TA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Low Specificity D-Threonine Aldolase-like Back     alignment and domain information
>cd00430 PLPDE_III_AR Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase Back     alignment and domain information
>TIGR00492 alr alanine racemase Back     alignment and domain information
>cd06817 PLPDE_III_DSD Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Eukaryotic D-Serine Dehydratase Back     alignment and domain information
>cd07376 PLPDE_III_DSD_D-TA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase Back     alignment and domain information
>cd06819 PLPDE_III_LS_D-TA Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Low Specificity D-Threonine Aldolase Back     alignment and domain information
>cd06814 PLPDE_III_DSD_D-TA_like_3 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 3 Back     alignment and domain information
>cd06818 PLPDE_III_cryptic_DSD Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bacterial Cryptic D-Serine Dehydratase Back     alignment and domain information
>PRK00053 alr alanine racemase; Reviewed Back     alignment and domain information
>cd06811 PLPDE_III_yhfX_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme yhfX Back     alignment and domain information
>PRK13340 alanine racemase; Reviewed Back     alignment and domain information
>cd06808 PLPDE_III Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Back     alignment and domain information
>cd06826 PLPDE_III_AR2 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme, Alanine Racemase 2 Back     alignment and domain information
>cd06812 PLPDE_III_DSD_D-TA_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 1 Back     alignment and domain information
>cd06825 PLPDE_III_VanT Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, VanT and similar proteins Back     alignment and domain information
>PRK03646 dadX alanine racemase; Reviewed Back     alignment and domain information
>cd06813 PLPDE_III_DSD_D-TA_like_2 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 2 Back     alignment and domain information
>PRK11930 putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional Back     alignment and domain information
>cd06827 PLPDE_III_AR_proteobact Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Proteobacterial Alanine Racemases Back     alignment and domain information
>COG3616 Predicted amino acid aldolase or racemase [Amino acid transport and metabolism] Back     alignment and domain information
>COG0787 Alr Alanine racemase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>cd06810 PLPDE_III_ODC_DapDC_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Ornithine and Diaminopimelate Decarboxylases, and Related Enzymes Back     alignment and domain information
>cd06839 PLPDE_III_Btrk_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Btrk Decarboxylase Back     alignment and domain information
>COG3457 Predicted amino acid racemase [Amino acid transport and metabolism] Back     alignment and domain information
>cd06842 PLPDE_III_Y4yA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Y4yA Back     alignment and domain information
>cd06828 PLPDE_III_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase Back     alignment and domain information
>TIGR01048 lysA diaminopimelate decarboxylase Back     alignment and domain information
>cd06843 PLPDE_III_PvsE_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme PvsE Back     alignment and domain information
>PLN02537 diaminopimelate decarboxylase Back     alignment and domain information
>cd06841 PLPDE_III_MccE_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme MccE Back     alignment and domain information
>TIGR03099 dCO2ase_PEP1 pyridoxal-dependent decarboxylase, exosortase system type 1 associated Back     alignment and domain information
>COG0019 LysA Diaminopimelate decarboxylase [Amino acid transport and metabolism] Back     alignment and domain information
>cd06830 PLPDE_III_ADC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Arginine Decarboxylase Back     alignment and domain information
>cd00622 PLPDE_III_ODC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase Back     alignment and domain information
>PF02784 Orn_Arg_deC_N: Pyridoxal-dependent decarboxylase, pyridoxal binding domain; InterPro: IPR022644 These enzymes are collectively known as group IV decarboxylases [] Back     alignment and domain information
>PRK11165 diaminopimelate decarboxylase; Provisional Back     alignment and domain information
>cd06836 PLPDE_III_ODC_DapDC_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Uncharacterized Proteins with similarity to Ornithine and Diaminopimelate Decarboxylases Back     alignment and domain information
>PRK05354 arginine decarboxylase; Provisional Back     alignment and domain information
>PLN02439 arginine decarboxylase Back     alignment and domain information
>TIGR01273 speA arginine decarboxylase, biosynthetic Back     alignment and domain information
>cd06831 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor Back     alignment and domain information
>cd06840 PLPDE_III_Bif_AspK_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bifunctional Aspartate Kinase/Diaminopimelate Decarboxylase Back     alignment and domain information
>TIGR01047 nspC carboxynorspermidine decarboxylase Back     alignment and domain information
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional Back     alignment and domain information
>cd06829 PLPDE_III_CANSDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Carboxynorspermidine Decarboxylase Back     alignment and domain information
>KOG0622 consensus Ornithine decarboxylase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK08091 ribulose-phosphate 3-epimerase; Validated Back     alignment and domain information
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK14057 epimerase; Provisional Back     alignment and domain information
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5 Back     alignment and domain information
>PRK08745 ribulose-phosphate 3-epimerase; Provisional Back     alignment and domain information
>PRK08005 epimerase; Validated Back     alignment and domain information
>COG1166 SpeA Arginine decarboxylase (spermidine biosynthesis) [Amino acid transport and metabolism] Back     alignment and domain information
>PRK08883 ribulose-phosphate 3-epimerase; Provisional Back     alignment and domain information
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional Back     alignment and domain information
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query199
1b54_A257 Crystal Structure Of A Yeast Hypothetical Protein-A 1e-23
1ct5_A256 Crystal Structure Of Yeast Hypothetical Protein Ybl 2e-21
3r79_A244 Crystal Structure Of An Uncharactertized Protein Fr 5e-20
3cpg_A282 Crystal Structure Of An Unknown Protein From Bifido 1e-19
1w8g_A234 Crystal Structure Of E. Coli K-12 Yggs Length = 234 3e-19
3sy1_A245 Crystal Structure Of Engineered Protein. Northeast 9e-15
>pdb|1B54|A Chain A, Crystal Structure Of A Yeast Hypothetical Protein-A Structure From Bnl's Human Proteome Project Length = 257 Back     alignment and structure 
Iteration: 1

 Score =  106 bits (264), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 68/171 (39%), Positives = 99/171 (57%), Gaps = 12/171 (7%)
Query: 29  LPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGR--KPLKVL 86
           LP+DIKWHF+G LQ+NK K L   VPNL  VE + + K A  L+++ +       P+   
Sbjct: 82  LPDDIKWHFIGGLQTNKCKDL-AKVPNLYSVETIDSLKKAKKLNESRAKFQPDCNPILCN 140
Query: 87  VQVNTSGEESKSGIDPSSCLGIVEHVRL--RCPNLEFSGLMTIGMPD--YTSTPEN--FR 140
           VQ+NTS E+ KSG++  + +  V    L   C  ++ +GLMTIG  +  +  + EN  F 
Sbjct: 141 VQINTSHEDQKSGLNNEAEIFEVIDFFLSEECKYIKLNGLMTIGSWNVSHEDSKENRDFA 200
Query: 141 TLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPR 191
           TL+  + ++    G +    +LSMGMS DF +AI  G+  VRIG+ IFG R
Sbjct: 201 TLVEWKKKIDAKFGTS---LKLSMGMSADFREAIRQGTAEVRIGTDIFGAR 248
>pdb|1CT5|A Chain A, Crystal Structure Of Yeast Hypothetical Protein Ybl036c-Selenomet Crystal Length = 256 Back     alignment and structure
>pdb|3R79|A Chain A, Crystal Structure Of An Uncharactertized Protein From Agrobacterium Tumefaciens Length = 244 Back     alignment and structure
>pdb|3CPG|A Chain A, Crystal Structure Of An Unknown Protein From Bifidobacterium Adolescentis Length = 282 Back     alignment and structure
>pdb|1W8G|A Chain A, Crystal Structure Of E. Coli K-12 Yggs Length = 234 Back     alignment and structure
>pdb|3SY1|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or70 Length = 245 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query199
1ct5_A256 Protein (yeast hypothetical protein, selenoMet); T 2e-76
3sy1_A245 UPF0001 protein YGGS; engineered protein, structur 2e-70
3cpg_A282 Uncharacterized protein; unknown protein, TIM barr 5e-69
3r79_A244 Uncharacterized protein; PSI-biology, structural g 1e-58
>1ct5_A Protein (yeast hypothetical protein, selenoMet); TIM barrel, pyridoxal-5'-phosphate, selenomethionine, structural genomics, PSI; HET: PLP; 2.00A {Saccharomyces cerevisiae} SCOP: c.1.6.2 PDB: 1b54_A* Length = 256 Back     alignment and structure
 Score =  228 bits (584), Expect = 2e-76
 Identities = 67/185 (36%), Positives = 101/185 (54%), Gaps = 13/185 (7%)

Query: 23  FIDKYN-LPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDK--AVSNLG 79
            I+K   LP+DIKWHF+G LQ+NK K L   VPNL  VE + + K A  L++  A     
Sbjct: 74  LIEKAKLLPDDIKWHFIGGLQTNKCKDLAK-VPNLYSVETIDSLKKAKKLNESRAKFQPD 132

Query: 80  RKPLKVLVQVNTSGEESKSGIDPSSCLG-IVEHVRLR-CPNLEFSGLMTIGMPDYTSTP- 136
             P+   VQ+NTS E+ KSG++  + +  +++      C  ++ +GLMTIG  + +    
Sbjct: 133 CNPILCNVQINTSHEDQKSGLNNEAEIFEVIDFFLSEECKYIKLNGLMTIGSWNVSHEDS 192

Query: 137 ---ENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPREY 193
               +F TL+  + ++    G      +LSMGMS DF +AI  G+  VRIG+ IFG R  
Sbjct: 193 KENRDFATLVEWKKKIDAKFG---TSLKLSMGMSADFREAIRQGTAEVRIGTDIFGARPP 249

Query: 194 AKKQQ 198
             + +
Sbjct: 250 KNEAR 254
>3sy1_A UPF0001 protein YGGS; engineered protein, structural genomics, PSI-biology, protei structure initiative; HET: MES; 1.47A {Escherichia coli} PDB: 1w8g_A* Length = 245 Back     alignment and structure
>3cpg_A Uncharacterized protein; unknown protein, TIM barrel, monomer, structural genomics, PSI-2, protein structure initiative; 1.71A {Bifidobacterium adolescentis ATCC15703} Length = 282 Back     alignment and structure
>3r79_A Uncharacterized protein; PSI-biology, structural genomics, NEW YORK structural genomi research consortium, TIM barrel; HET: PLP; 1.90A {Agrobacterium tumefaciens} Length = 244 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query199
3sy1_A245 UPF0001 protein YGGS; engineered protein, structur 100.0
3r79_A244 Uncharacterized protein; PSI-biology, structural g 100.0
1ct5_A256 Protein (yeast hypothetical protein, selenoMet); T 100.0
3cpg_A282 Uncharacterized protein; unknown protein, TIM barr 100.0
3gwq_A 426 D-serine deaminase; structural genomics, joint cen 99.97
1vfs_A 386 Alanine racemase; TIM-barrel, greek-KEY motief, is 99.94
1xfc_A 384 Alanine racemase; alpha-beta barrel, beta-structur 99.94
4ecl_A 374 Serine racemase, vantg; antibiotic resistance, van 99.94
2vd8_A 391 Alanine racemase; pyridoxal 5'-phosphate, peptidog 99.92
1rcq_A 357 Catabolic alanine racemase DADX; alpha-beta barrel 99.92
3llx_A 376 Predicted amino acid aldolase or racemase; structu 99.92
2rjg_A 379 Alanine racemase; alpha/beta barrel, cell shape, c 99.92
1bd0_A 388 Alanine racemase; isomerase, pyridoxal phosphate, 99.92
2dy3_A 361 Alanine racemase; alpha/beta barrel, isomerase; HE 99.92
3e5p_A 371 Alanine racemase; ALR, PLP, SCP, isomerase, pyrido 99.91
3mub_A 367 Alanine racemase; alpha/beta barrel, extended beta 99.91
4a3q_A 382 Alanine racemase 1; isomerase, PLP-dependent enzym 99.9
3kw3_A 376 Alanine racemase; niaid, ssgcid, seattle structura 99.9
3co8_A 380 Alanine racemase; protein structure initiative II, 99.9
3anu_A 376 D-serine dehydratase; PLP-dependent fold-type III 99.88
3hur_A 395 Alanine racemase; structural genomics, isomerase, 99.87
2p3e_A 420 Diaminopimelate decarboxylase; southeast collabora 99.82
2j66_A 428 BTRK, decarboxylase; butirosin, AHBA biosynthesis, 99.69
1twi_A 434 Diaminopimelate decarboxylase; antibiotic resistan 99.68
2qgh_A 425 Diaminopimelate decarboxylase; lyase; HET: PLP LYS 99.65
2o0t_A 467 Diaminopimelate decarboxylase; PLP binding enzyme, 99.59
3vab_A 443 Diaminopimelate decarboxylase 1; structural genomi 99.51
3n2b_A 441 Diaminopimelate decarboxylase; LYSA, lyase, struct 99.49
2plj_A 419 Lysine/ornithine decarboxylase; type IV decarboxyl 99.41
2nva_A 372 Arginine decarboxylase, A207R protein; PLP, TIM ba 99.41
1f3t_A 425 ODC, ornithine decarboxylase; beta-alpha-barrel, m 99.25
3btn_A 448 Antizyme inhibitor 1; TIM-like A/B barrel domain a 99.2
3n2o_A 648 ADC, biosynthetic arginine decarboxylase; lyase; H 99.16
2yxx_A 386 Diaminopimelate decarboxylase; TM1517, TIM beta/al 99.16
3nzq_A 666 ADC, biosynthetic arginine decarboxylase; alpha-be 99.14
3nzp_A 619 Arginine decarboxylase; alpha-beta protein, struct 99.13
2oo0_A 471 ODC, ornithine decarboxylase; beta-alpha barrel, s 99.12
7odc_A 424 Protein (ornithine decarboxylase); pyridoxal-5'-ph 99.12
1knw_A 425 Diaminopimelate decarboxylase; pyridoxal-phosphate 99.06
3mt1_A 365 Putative carboxynorspermidine decarboxylase prote; 98.14
3n29_A 418 Carboxynorspermidine decarboxylase; lyase; HET: PL 98.12
3inp_A246 D-ribulose-phosphate 3-epimerase; IDP02542, isomer 89.45
3ctl_A231 D-allulose-6-phosphate 3-epimerase; D-glucitol 6-p 86.48
1tqj_A230 Ribulose-phosphate 3-epimerase; beta-alpha barrel 83.49
3cu2_A237 Ribulose-5-phosphate 3-epimerase; YP_718263.1, rib 83.35
>3sy1_A UPF0001 protein YGGS; engineered protein, structural genomics, PSI-biology, protei structure initiative; HET: MES; 1.47A {Escherichia coli} PDB: 1w8g_A* Back     alignment and structure
Probab=100.00  E-value=2.2e-47  Score=319.79  Aligned_cols=182  Identities=32%  Similarity=0.437  Sum_probs=160.0

Q ss_pred             HHHHHHHhc-----cCCcHHHHHHhh-cCCC----CceeeeecccchHHHHhHhccCCCccEEEecCcHHHHHHHHHHHH
Q 029062            7 ALVKITYKK-----SLIKLLRFIDKY-NLPE----DIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVS   76 (199)
Q Consensus         7 ~~~~~~~~~-----~~n~~qE~~~k~-~~~~----~i~~h~IG~lq~~ki~~l~~~~~~~~~i~sVDs~~~a~~l~~~a~   76 (199)
                      +.+...|++     ++||+||+.+|+ .++.    ++.|||||++|+||++.++   +.++++++|||++.++.|++.|.
T Consensus        42 ~~i~~~~~~G~~~fgen~vqEa~~kr~~~~~~~~~~i~w~~iG~lq~nk~~~~~---~~~~~i~sVds~~~a~~l~~~a~  118 (245)
T 3sy1_A           42 SAIAEAIDAGQRQFSEHYVQEGVDKIRHFQELGVTGLEWNFAGPLQSNKSRLVA---EHFDWCITIDRLRIATRLNDQRP  118 (245)
T ss_dssp             HHHHHHHHTTCCEEEESSHHHHHHHHHHHHHHTCCSCEEEECSCCCGGGHHHHH---HHCSEEEEECCHHHHHHHHHHSC
T ss_pred             HHHHHHHHcCCCEEEEecHHHHHHHHHhhhhccCCCeEEeecCCCChHHHHHHH---HHCCEEEecCCHHHHHHHHHHHH
Confidence            446677776     899999999999 5542    6999999999999999988   34799999999999999999999


Q ss_pred             hcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCCCeeEEEEEeeCCCCCC--ChHHHHHHHHHHHHHHHHHhC
Q 029062           77 NLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYT--STPENFRTLLNCRAEVCKALG  154 (199)
Q Consensus        77 ~~g~~~i~VllqIntg~e~~R~Gv~~~~~~~l~~~i~~~~~~L~l~GLmt~~~~~~~--~~~~~f~~l~~~~~~l~~~~g  154 (199)
                      +.|+ +++||||||||+|++|+|++|+++.++++.+. .+|+|+++|||||++..++  +.++.|+.+.++++.|++. +
T Consensus       119 ~~~~-~~~V~lqVntG~e~~R~G~~~ee~~~l~~~i~-~~~~l~l~Glmt~~~~~~d~~~~~~~f~~l~~l~~~l~~~-~  195 (245)
T 3sy1_A          119 AELP-PLNVLIQINISDENSKSGIQLAELDELAAAVA-ELPRLRLRGLSAIPAPESEYVRQFEVARQMAVAFAGLKTR-Y  195 (245)
T ss_dssp             TTSC-CEEEEEEBCCSCTTCCSSBCGGGHHHHHHHHT-TCTTEEEEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTT-S
T ss_pred             HcCC-CceEEEEEECCCCcCCcCCCHHHHHHHHHHHH-cCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHh-C
Confidence            9998 99999999999999999999999999999998 9999999999999998655  3578999999999999886 4


Q ss_pred             CCCCCCEEEecCCcCHHHHHHcCCCEEecCccccCCCccccc
Q 029062          155 MAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPREYAKK  196 (199)
Q Consensus       155 ~~~~~~~lS~Gms~d~~~a~~~g~t~VR~Gs~ifgd~~~~~~  196 (199)
                      .+  +..||||||+||+.|+++|+|+||+||+|||+|+|...
T Consensus       196 ~~--~~~LSmGmS~d~~~Ai~~G~t~vRvGt~iFg~r~y~~~  235 (245)
T 3sy1_A          196 PH--IDTLALGQSDDMEAAIAAGSTMVAIGTAIFGARDYSKK  235 (245)
T ss_dssp             TT--CCEEECCCSTTHHHHHHHTCCEEEESHHHHCC------
T ss_pred             CC--CCEEeccCcHhHHHHHHcCCCEEECchHHhCCCCCCCC
Confidence            33  68999999999999999999999999999999999764
>3r79_A Uncharacterized protein; PSI-biology, structural genomics, NEW YORK structural genomi research consortium, TIM barrel; HET: PLP; 1.90A {Agrobacterium tumefaciens} Back     alignment and structure
>1ct5_A Protein (yeast hypothetical protein, selenoMet); TIM barrel, pyridoxal-5'-phosphate, selenomethionine, structural genomics, PSI; HET: PLP; 2.00A {Saccharomyces cerevisiae} SCOP: c.1.6.2 PDB: 1b54_A* Back     alignment and structure
>3cpg_A Uncharacterized protein; unknown protein, TIM barrel, monomer, structural genomics, PSI-2, protein structure initiative; 1.71A {Bifidobacterium adolescentis ATCC15703} Back     alignment and structure
>3gwq_A D-serine deaminase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; HET: MSE; 2.00A {Burkholderia xenovorans LB400} Back     alignment and structure
>1vfs_A Alanine racemase; TIM-barrel, greek-KEY motief, isomerase; HET: KCX DCS; 1.90A {Streptomyces lavendulae} SCOP: b.49.2.2 c.1.6.1 PDB: 1vfh_A* 1vft_A* Back     alignment and structure
>1xfc_A Alanine racemase; alpha-beta barrel, beta-structure for C-terminal domain, INT aldimine form, isomerase; HET: PLP; 1.90A {Mycobacterium tuberculosis} Back     alignment and structure
>4ecl_A Serine racemase, vantg; antibiotic resistance, vancomycin resistance, center for STR genomics of infectious diseases (csgid); HET: MSE; 2.02A {Enterococcus faecalis} Back     alignment and structure
>2vd8_A Alanine racemase; pyridoxal 5'-phosphate, peptidoglycan synthesis, PLP, OPPF, L-alanine, isomerase, D- alanine, pyridoxal phosphate; HET: MLY LLP; 1.47A {Bacillus anthracis} PDB: 2vd9_A* 3ha1_A* Back     alignment and structure
>1rcq_A Catabolic alanine racemase DADX; alpha-beta barrel, beta-structure for C-terminal domain, internal/external aldimine forms, isomerase; HET: KCX PLP DLY; 1.45A {Pseudomonas aeruginosa} SCOP: b.49.2.2 c.1.6.1 PDB: 2odo_A* Back     alignment and structure
>3llx_A Predicted amino acid aldolase or racemase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: LLP TRS; 1.50A {Idiomarina loihiensis} Back     alignment and structure
>2rjg_A Alanine racemase; alpha/beta barrel, cell shape, cell WALL biogenesis/degradat isomerase, peptidoglycan synthesis, pyridoxal phosphate; HET: KCX PLP; 2.40A {Escherichia coli} PDB: 2rjh_A* 3b8v_A* 3b8u_A* 3b8t_A* 3b8w_A* Back     alignment and structure
>1bd0_A Alanine racemase; isomerase, pyridoxal phosphate, alanine phosphonate; HET: IN5; 1.60A {Geobacillus stearothermophilus} SCOP: b.49.2.2 c.1.6.1 PDB: 1sft_A* 2sfp_A* 1l6g_A* 1niu_A* 1l6f_A* 1xql_A* 1xqk_A* 1epv_A* 1ftx_A* 3uw6_A Back     alignment and structure
>2dy3_A Alanine racemase; alpha/beta barrel, isomerase; HET: PLP; 2.10A {Corynebacterium glutamicum} Back     alignment and structure
>3e5p_A Alanine racemase; ALR, PLP, SCP, isomerase, pyridoxal phosph; HET: PLP EPE 2PE; 2.50A {Enterococcus faecalis} PDB: 3e6e_A* Back     alignment and structure
>4a3q_A Alanine racemase 1; isomerase, PLP-dependent enzymes; HET: PLP; 2.15A {Staphylococcus aureus} PDB: 3oo2_A Back     alignment and structure
>3kw3_A Alanine racemase; niaid, ssgcid, seattle structural genomics center for infect disease, iodide SOAK, LLP, CAT-scratch DI isomerase; HET: LLP; 2.04A {Bartonella henselae} Back     alignment and structure
>3co8_A Alanine racemase; protein structure initiative II, PSI-II, PLP, TIM barrel, structural genomics, NEW YORK SGX center for structural genomics; HET: PLP; 1.70A {Oenococcus oeni} Back     alignment and structure
>3anu_A D-serine dehydratase; PLP-dependent fold-type III enzyme, PL binding, zinc binding, lyase; HET: PLP; 1.90A {Gallus gallus} PDB: 3anv_A* 3awn_A* 3awo_A* Back     alignment and structure
>3hur_A Alanine racemase; structural genomics, isomerase, pyridoxal phosphate, PSI-2, protein structure initiative; 2.50A {Oenococcus oeni psu-1} Back     alignment and structure
>2p3e_A Diaminopimelate decarboxylase; southeast collaboratory for struct genomics, riken spring-8 center; 1.99A {Aquifex aeolicus} Back     alignment and structure
>2j66_A BTRK, decarboxylase; butirosin, AHBA biosynthesis, lyase; HET: PLP; 1.65A {Bacillus circulans} Back     alignment and structure
>1twi_A Diaminopimelate decarboxylase; antibiotic resistance, lysine biosynthesis, structural genomics, NYSGXRC, PSI; HET: LYS PLP; 2.00A {Methanocaldococcus jannaschii} SCOP: b.49.2.3 c.1.6.1 PDB: 1tuf_A* Back     alignment and structure
>2qgh_A Diaminopimelate decarboxylase; lyase; HET: PLP LYS; 2.30A {Helicobacter pylori} PDB: 3c5q_A* Back     alignment and structure
>2o0t_A Diaminopimelate decarboxylase; PLP binding enzyme, lysine biosynthesis, STRU genomics, TB structural genomics consortium, TBSGC; HET: LLP; 2.33A {Mycobacterium tuberculosis} PDB: 1hkv_A* 1hkw_A Back     alignment and structure
>3vab_A Diaminopimelate decarboxylase 1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: LLP; 2.10A {Brucella melitensis BV} Back     alignment and structure
>3n2b_A Diaminopimelate decarboxylase; LYSA, lyase, structural genom center for structural genomics of infectious diseases, CSGI; 1.80A {Vibrio cholerae} Back     alignment and structure
>2plj_A Lysine/ornithine decarboxylase; type IV decarboxylase, beta/alpha barrel, beta barrel, lyase; HET: P3T; 1.70A {Vibrio vulnificus} PDB: 2plk_A* Back     alignment and structure
>2nva_A Arginine decarboxylase, A207R protein; PLP, TIM barrel, eukaryotic ODC- like, lyase; HET: PL2; 1.80A {Paramecium bursaria chlorella virus 1} PDB: 2nv9_A* Back     alignment and structure
>1f3t_A ODC, ornithine decarboxylase; beta-alpha-barrel, modified greek KEY beta-sheet, lyase; HET: PLP; 2.00A {Trypanosoma brucei} SCOP: b.49.2.3 c.1.6.1 PDB: 1qu4_A* 1szr_C* 2tod_A* 1njj_A* Back     alignment and structure
>3btn_A Antizyme inhibitor 1; TIM-like A/B barrel domain and A sheet domain, structural genomics, israel structural proteomics center, ISPC; 2.05A {Mus musculus} Back     alignment and structure
>3n2o_A ADC, biosynthetic arginine decarboxylase; lyase; HET: PLP; 2.30A {Vibrio vulnificus} Back     alignment and structure
>2yxx_A Diaminopimelate decarboxylase; TM1517, TIM beta/alpha barrel fold, lyase, structural genomi NPPSFA; HET: PLP; 1.70A {Thermotoga maritima} Back     alignment and structure
>3nzq_A ADC, biosynthetic arginine decarboxylase; alpha-beta protein, structural genomics, PSI-biology, protei structure initiative; 3.10A {Escherichia coli} Back     alignment and structure
>3nzp_A Arginine decarboxylase; alpha-beta protein, structural genomics, PSI-biology, protei structure initiative; HET: PLP; 3.00A {Campylobacter jejuni subsp} Back     alignment and structure
>2oo0_A ODC, ornithine decarboxylase; beta-alpha barrel, sheet, lyase; HET: PLP; 1.90A {Homo sapiens} Back     alignment and structure
>7odc_A Protein (ornithine decarboxylase); pyridoxal-5'-phosphate, PLP, group IV decarboxylase, polyami parasitical, chemotherapy target, putrescine; HET: PLP; 1.60A {Mus musculus} SCOP: b.49.2.3 c.1.6.1 PDB: 2on3_A 1d7k_A* Back     alignment and structure
>1knw_A Diaminopimelate decarboxylase; pyridoxal-phosphate, decarboxylation, lysin barrel, lyase; HET: PLP MES; 2.10A {Escherichia coli} SCOP: b.49.2.3 c.1.6.1 PDB: 1ko0_A* Back     alignment and structure
>3mt1_A Putative carboxynorspermidine decarboxylase prote; PSI2, MCSG, structural genomics; 2.50A {Sinorhizobium meliloti} Back     alignment and structure
>3n29_A Carboxynorspermidine decarboxylase; lyase; HET: PLP; 1.90A {Campylobacter jejuni subsp} Back     alignment and structure
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp} Back     alignment and structure
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A* Back     alignment and structure
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2 Back     alignment and structure
>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 199
d1ct5a_244 c.1.6.2 (A:) "Hypothetical" protein ybl036c {Baker 9e-24
>d1ct5a_ c.1.6.2 (A:) "Hypothetical" protein ybl036c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 244 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: PLP-binding barrel
family: "Hypothetical" protein ybl036c
domain: "Hypothetical" protein ybl036c
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 92.3 bits (228), Expect = 9e-24
 Identities = 53/164 (32%), Positives = 81/164 (49%), Gaps = 10/164 (6%)

Query: 33  IKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRK-PLKVLVQVNT 91
           IKWHF+G LQ+NK K L        +      +K     +          P+   VQ+NT
Sbjct: 84  IKWHFIGGLQTNKCKDLAKVPNLYSVETIDSLKKAKKLNESRAKFQPDCNPILCNVQINT 143

Query: 92  SGEESKSGIDPSSCLG--IVEHVRLRCPNLEFSGLMTIGMPDYTSTPE----NFRTLLNC 145
           S E+ KSG++  + +   I   +   C  ++ +GLMTIG  + +        +F TL+  
Sbjct: 144 SHEDQKSGLNNEAEIFEVIDFFLSEECKYIKLNGLMTIGSWNVSHEDSKENRDFATLVEW 203

Query: 146 RAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFG 189
           + ++    G +    +LSMGMS DF +AI  G+  VRIG+ IFG
Sbjct: 204 KKKIDAKFGTS---LKLSMGMSADFREAIRQGTAEVRIGTDIFG 244

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query199
d1ct5a_244 "Hypothetical" protein ybl036c {Baker's yeast (Sac 100.0
d1vfsa2237 Alanine racemase {Streptomyces lavendulae [TaxId: 99.89
d1bd0a2233 Alanine racemase {Bacillus stearothermophilus [Tax 99.81
d1rcqa2226 Alanine racemase {Pseudomonas aeruginosa [TaxId: 2 99.79
d1hkva2265 Diaminopimelate decarboxylase LysA {Mycobacterium 98.51
d1twia2264 Diaminopimelate decarboxylase LysA {Archaeon Metha 98.39
d1f3ta2240 Eukaryotic ornithine decarboxylase {Trypanosoma br 98.3
d1knwa2247 Diaminopimelate decarboxylase LysA {Escherichia co 98.17
d7odca2240 Eukaryotic ornithine decarboxylase {Mouse (Mus mus 98.09
d2flia1217 D-ribulose-5-phosphate 3-epimerase {Streptococcus 92.79
d1rpxa_230 D-ribulose-5-phosphate 3-epimerase {Potato (Solanu 90.62
d1h1ya_220 D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sa 87.54
d1tqja_221 D-ribulose-5-phosphate 3-epimerase {Synechocystis 86.97
>d1ct5a_ c.1.6.2 (A:) "Hypothetical" protein ybl036c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: PLP-binding barrel
family: "Hypothetical" protein ybl036c
domain: "Hypothetical" protein ybl036c
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.1e-48  Score=319.51  Aligned_cols=181  Identities=36%  Similarity=0.610  Sum_probs=155.3

Q ss_pred             hhHHHHHHHhc-----cCCcHHHHHHhh-cCCCCceeeeecccchHHHHhHhccCCCccEEEecCcHHHHHHHHHHHHhc
Q 029062            5 TVALVKITYKK-----SLIKLLRFIDKY-NLPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNL   78 (199)
Q Consensus         5 ~~~~~~~~~~~-----~~n~~qE~~~k~-~~~~~i~~h~IG~lq~~ki~~l~~~~~~~~~i~sVDs~~~a~~l~~~a~~~   78 (199)
                      .++.+.+.|+.     ||||+|||.+|+ .+++++.|||||+||+||++.+++. ..++++|||||++.++.|++.+.+.
T Consensus        50 ~~~~I~~~~~~G~~~fGENrvQE~~~K~~~l~~~i~wHfIG~LQsNKvk~i~~~-~~~~~I~svds~kla~~l~~~~~~~  128 (244)
T d1ct5a_          50 PASDIQILYDHGVREFGENYVQELIEKAKLLPDDIKWHFIGGLQTNKCKDLAKV-PNLYSVETIDSLKKAKKLNESRAKF  128 (244)
T ss_dssp             CHHHHHHHHHHTCCEEEECCHHHHHHHHHHSCTTCEEEECSCCCGGGHHHHHHC-TTEEEEEEECSHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHcCCchhhcchhhhhhhhccccccceeeeeecccccchHHHHHHh-cccccccccccccchhHHHHHHhhh
Confidence            46778888888     999999999999 8888999999999999999999853 3457899999999999999988765


Q ss_pred             CC--CCceEEEEEeCCCCCCccCCChh-hHHHHHHHHH-hcCCCeeEEEEEeeCCCC--C--CChHHHHHHHHHHHHHHH
Q 029062           79 GR--KPLKVLVQVNTSGEESKSGIDPS-SCLGIVEHVR-LRCPNLEFSGLMTIGMPD--Y--TSTPENFRTLLNCRAEVC  150 (199)
Q Consensus        79 g~--~~i~VllqIntg~e~~R~Gv~~~-~~~~l~~~i~-~~~~~L~l~GLmt~~~~~--~--~~~~~~f~~l~~~~~~l~  150 (199)
                      +.  .+++|+||||+++|++|+|++|+ ++.++++.+. ..+++|+++|||||++..  +  .....+|+.++++++.++
T Consensus       129 ~~~~~~~~~~iQVNi~~e~~KsG~~~~~~l~~~~~~~~~~~~~~l~l~GLM~i~p~~~~~~~~~~~~~F~~l~~l~~~l~  208 (244)
T d1ct5a_         129 QPDCNPILCNVQINTSHEDQKSGLNNEAEIFEVIDFFLSEECKYIKLNGLMTIGSWNVSHEDSKENRDFATLVEWKKKID  208 (244)
T ss_dssp             CTTSCCEEEEEEBCCSSSCCSSSBCCHHHHHHHHHHHHSTTCCSEEEEEEECCCCCC---------HHHHHHHHHHHHHH
T ss_pred             hcccCcceeEEeeecccccccCCCCcHHHHHHHHHHHHHHhcccchhccccccccCCCCchhhHHHHHHHHHHHHHHHHh
Confidence            42  26889999999999999999885 6788888773 158999999999999863  2  234578999999999999


Q ss_pred             HHhCCCCCCCEEEecCCcCHHHHHHcCCCEEecCccccC
Q 029062          151 KALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFG  189 (199)
Q Consensus       151 ~~~g~~~~~~~lS~Gms~d~~~a~~~g~t~VR~Gs~ifg  189 (199)
                      ..++.   ...||||||+||++|+++|+|+||+||+|||
T Consensus       209 ~~~~~---~~~LSMGMS~Dye~AI~~GsT~VRIGs~iFG  244 (244)
T d1ct5a_         209 AKFGT---SLKLSMGMSADFREAIRQGTAEVRIGTDIFG  244 (244)
T ss_dssp             HHHCC---CCEEECCCTTTHHHHHHTTCSEEEESHHHHC
T ss_pred             ccCCC---CCEEeChhhhhHHHHHHCCCCEEEcCchhcC
Confidence            87654   3689999999999999999999999999998
>d1vfsa2 c.1.6.1 (A:13-249) Alanine racemase {Streptomyces lavendulae [TaxId: 1914]} Back     information, alignment and structure
>d1bd0a2 c.1.6.1 (A:12-244) Alanine racemase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1rcqa2 c.1.6.1 (A:8-233) Alanine racemase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1hkva2 c.1.6.1 (A:46-310) Diaminopimelate decarboxylase LysA {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1twia2 c.1.6.1 (A:50-313) Diaminopimelate decarboxylase LysA {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1f3ta2 c.1.6.1 (A:44-283) Eukaryotic ornithine decarboxylase {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d1knwa2 c.1.6.1 (A:32-278) Diaminopimelate decarboxylase LysA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d7odca2 c.1.6.1 (A:44-283) Eukaryotic ornithine decarboxylase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase {Streptococcus pyogenes [TaxId: 1314]} Back     information, alignment and structure
>d1rpxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Potato (Solanum tuberosum) [TaxId: 4113]} Back     information, alignment and structure
>d1h1ya_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sativa) [TaxId: 4530]} Back     information, alignment and structure
>d1tqja_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Synechocystis sp. PCC 6803 [TaxId: 1148]} Back     information, alignment and structure