Citrus Sinensis ID: 029100

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------20
MAIAISAEKPSSVETGLSPLSSPPPVILTQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGAE
cccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccEEEEcccHHHHHHHHHHHHHHHccccccEEEEcccHHHHHHHHHcccccccccccccccEEEcccccccccccccccccHHHHHHHHHHHHcccEEEEEcccccccccccccccccEEEccccHHHHHHHHHHHHHcccccEEEEccccc
cEEEEEcccccccccccccccccccccccHHHHHHHHHHHHHHHcccccEEEEcccHHHHHHHHHHHHHHHHccccccEEEEccHHHHHHHHHccccEccHHHcccEEEEEEcccEEcccccEEccccccHHHHHHHHccEEEEEEEEEHHHEccccccccccccEEEcHHHHHHHHHHHHHHccccccccEEEEcccc
maiaisaekpssvetglsplsspppviltQDELKKIAAYKAVEFVESGMvlglgtgstaKHAVDRIGELLRqgkltnivgiptskktHEQAVSlgiplsdldsypvvdlaidgadevdpfmnlvkgrggslLREKMVEGACKKFVVIVDesklvphlggsglampvevvPYCWKFTAKRLQDLFEDCGCVAKLRTTGAE
maiaisaekpssvetglsplsspppvILTQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNivgiptskkthEQAVSLgiplsdldsyPVVDLAIDgadevdpfMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGAE
MAIAISAEKPSSVETGlsplsspppVILTQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGAE
**************************ILTQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKL******
*****************************QDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVA*LRT****
****************LSPLSSPPPVILTQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGAE
**************************ILTQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRT****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAIAISAEKPSSVETGLSPLSSPPPVILTQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGAE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query199 2.2.26 [Sep-21-2011]
Q9ZU38265 Probable ribose-5-phospha yes no 0.874 0.656 0.822 2e-80
B8FL28230 Ribose-5-phosphate isomer yes no 0.773 0.669 0.561 1e-40
A7HS32231 Ribose-5-phosphate isomer yes no 0.814 0.701 0.475 2e-36
Q5JH26229 Ribose-5-phosphate isomer yes no 0.768 0.668 0.454 1e-35
Q72J47227 Ribose-5-phosphate isomer yes no 0.814 0.713 0.502 6e-35
Q9V0L6229 Ribose-5-phosphate isomer yes no 0.814 0.707 0.431 9e-35
Q5SIR5227 Ribose-5-phosphate isomer yes no 0.814 0.713 0.497 2e-34
B3QCR0232 Ribose-5-phosphate isomer yes no 0.819 0.702 0.479 2e-34
Q6N8C3232 Ribose-5-phosphate isomer yes no 0.819 0.702 0.479 2e-34
Q2JSC9230 Ribose-5-phosphate isomer yes no 0.814 0.704 0.502 3e-34
>sp|Q9ZU38|RPIA_ARATH Probable ribose-5-phosphate isomerase OS=Arabidopsis thaliana GN=At2g01290 PE=2 SV=1 Back     alignment and function desciption
 Score =  298 bits (763), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 144/175 (82%), Positives = 162/175 (92%), Gaps = 1/175 (0%)

Query: 21  SSPP-PVILTQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIV 79
           SSPP P+ LTQDELK+IAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKL NIV
Sbjct: 23  SSPPQPMNLTQDELKRIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLENIV 82

Query: 80  GIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEG 139
           GIPTSKKT EQA+SLGIPLSDLD++PV+DL+IDGADEVDPF+NLVKGRGGSLLREKM+EG
Sbjct: 83  GIPTSKKTQEQALSLGIPLSDLDAHPVIDLSIDGADEVDPFLNLVKGRGGSLLREKMIEG 142

Query: 140 ACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLR 194
           A KKFVVIVD+SK+V H+GGS LA+PVE+VP+CWKFTA++L+ L E  GC A LR
Sbjct: 143 ASKKFVVIVDDSKMVKHIGGSKLALPVEIVPFCWKFTAEKLRSLLEGYGCEANLR 197

Arabidopsis thaliana (taxid: 3702)
EC: 5EC: .EC: 3EC: .EC: 1EC: .EC: 6
>sp|B8FL28|RPIA_DESAA Ribose-5-phosphate isomerase A OS=Desulfatibacillum alkenivorans (strain AK-01) GN=rpiA PE=3 SV=1 Back     alignment and function description
>sp|A7HS32|RPIA_PARL1 Ribose-5-phosphate isomerase A OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=rpiA PE=3 SV=1 Back     alignment and function description
>sp|Q5JH26|RPIA_PYRKO Ribose-5-phosphate isomerase A OS=Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) GN=rpiA PE=3 SV=1 Back     alignment and function description
>sp|Q72J47|RPIA_THET2 Ribose-5-phosphate isomerase A OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=rpiA PE=1 SV=1 Back     alignment and function description
>sp|Q9V0L6|RPIA_PYRAB Ribose-5-phosphate isomerase A OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=rpiA PE=3 SV=1 Back     alignment and function description
>sp|Q5SIR5|RPIA_THET8 Ribose-5-phosphate isomerase A OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=rpiA PE=3 SV=1 Back     alignment and function description
>sp|B3QCR0|RPIA_RHOPT Ribose-5-phosphate isomerase A OS=Rhodopseudomonas palustris (strain TIE-1) GN=rpiA PE=3 SV=1 Back     alignment and function description
>sp|Q6N8C3|RPIA_RHOPA Ribose-5-phosphate isomerase A OS=Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) GN=rpiA PE=3 SV=1 Back     alignment and function description
>sp|Q2JSC9|RPIA_SYNJA Ribose-5-phosphate isomerase A OS=Synechococcus sp. (strain JA-3-3Ab) GN=rpiA PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query199
225424168269 PREDICTED: probable ribose-5-phosphate i 0.974 0.721 0.828 3e-86
297746207 322 unnamed protein product [Vitis vinifera] 0.979 0.605 0.822 7e-86
359478683 345 PREDICTED: probable ribose-5-phosphate i 0.974 0.562 0.828 9e-86
449434554275 PREDICTED: probable ribose-5-phosphate i 0.929 0.672 0.852 2e-85
356575632265 PREDICTED: probable ribose-5-phosphate i 0.954 0.716 0.816 9e-85
356536220266 PREDICTED: probable ribose-5-phosphate i 0.959 0.718 0.803 7e-84
224058933271 predicted protein [Populus trichocarpa] 0.929 0.682 0.790 2e-82
357444549288 hypothetical protein MTR_1g108440 [Medic 0.844 0.583 0.863 2e-80
224101807264 predicted protein [Populus trichocarpa] 0.919 0.693 0.804 2e-80
388491358268 unknown [Medicago truncatula] 0.844 0.626 0.857 1e-79
>gi|225424168|ref|XP_002284079.1| PREDICTED: probable ribose-5-phosphate isomerase-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  323 bits (827), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 169/204 (82%), Positives = 184/204 (90%), Gaps = 10/204 (4%)

Query: 1   MAIA----ISAEKPSSVETGL-----SPLSSPPPVILTQDELKKIAAYKAVEFVESGMVL 51
           MAIA    I +EK S++ETG+     SP  S P VILTQDELKKIAAYKAVE+VESGMVL
Sbjct: 1   MAIAYPHFIGSEK-SAMETGIILSPSSPSPSLPHVILTQDELKKIAAYKAVEYVESGMVL 59

Query: 52  GLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAI 111
           GLGTGSTAKHAVDRIGELLRQGKL NIVGIPTSKKTHEQAVSLGIPLSDLDS+P++DLAI
Sbjct: 60  GLGTGSTAKHAVDRIGELLRQGKLKNIVGIPTSKKTHEQAVSLGIPLSDLDSHPILDLAI 119

Query: 112 DGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPY 171
           DGADEVDP++NLVKGRGGSLLREKMVEGACKKF+VIVDESKLV HLGGSGLAMPVE+VP+
Sbjct: 120 DGADEVDPYLNLVKGRGGSLLREKMVEGACKKFIVIVDESKLVNHLGGSGLAMPVEIVPF 179

Query: 172 CWKFTAKRLQDLFEDCGCVAKLRT 195
           CWKFTA+RLQ  FE+ GCVAKLRT
Sbjct: 180 CWKFTAQRLQMFFEESGCVAKLRT 203

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297746207|emb|CBI16263.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359478683|ref|XP_002282058.2| PREDICTED: probable ribose-5-phosphate isomerase-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449434554|ref|XP_004135061.1| PREDICTED: probable ribose-5-phosphate isomerase-like [Cucumis sativus] gi|449493428|ref|XP_004159286.1| PREDICTED: probable ribose-5-phosphate isomerase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356575632|ref|XP_003555942.1| PREDICTED: probable ribose-5-phosphate isomerase-like [Glycine max] Back     alignment and taxonomy information
>gi|356536220|ref|XP_003536637.1| PREDICTED: probable ribose-5-phosphate isomerase-like [Glycine max] Back     alignment and taxonomy information
>gi|224058933|ref|XP_002299653.1| predicted protein [Populus trichocarpa] gi|222846911|gb|EEE84458.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357444549|ref|XP_003592552.1| hypothetical protein MTR_1g108440 [Medicago truncatula] gi|355481600|gb|AES62803.1| hypothetical protein MTR_1g108440 [Medicago truncatula] Back     alignment and taxonomy information
>gi|224101807|ref|XP_002312428.1| predicted protein [Populus trichocarpa] gi|118488529|gb|ABK96077.1| unknown [Populus trichocarpa] gi|222852248|gb|EEE89795.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|388491358|gb|AFK33745.1| unknown [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query199
TAIR|locus:2038801265 RPI2 "ribose-5-phosphate isome 0.839 0.630 0.832 1.1e-71
TAIR|locus:2026296267 RSW10 "RADIAL SWELLING 10" [Ar 0.839 0.625 0.820 1e-68
TAIR|locus:2084898276 EMB3119 "EMBRYO DEFECTIVE 3119 0.939 0.677 0.641 4e-58
TIGR_CMR|BA_2791220 BA_2791 "ribose 5-phosphate is 0.804 0.727 0.440 2.3e-32
ZFIN|ZDB-GENE-041114-24275 rpia "ribose 5-phosphate isome 0.713 0.516 0.482 2.7e-29
UNIPROTKB|P49247311 RPIA "Ribose-5-phosphate isome 0.804 0.514 0.445 1.9e-28
DICTYBASE|DDB_G0276711232 rpiA "ribose-5-phosphate isome 0.753 0.646 0.455 2.4e-28
UNIPROTKB|J9NX73311 RPIA "Uncharacterized protein" 0.804 0.514 0.445 3.1e-28
UNIPROTKB|A2TLM1306 RPIA "Ribose-5-phosphate isome 0.804 0.522 0.439 6.4e-28
UNIPROTKB|F1STC1306 RPIA "Ribose-5-phosphate isome 0.804 0.522 0.439 6.4e-28
TAIR|locus:2038801 RPI2 "ribose-5-phosphate isomerase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 725 (260.3 bits), Expect = 1.1e-71, P = 1.1e-71
 Identities = 139/167 (83%), Positives = 156/167 (93%)

Query:    28 LTQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKT 87
             LTQDELK+IAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKL NIVGIPTSKKT
Sbjct:    31 LTQDELKRIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLENIVGIPTSKKT 90

Query:    88 HEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVI 147
              EQA+SLGIPLSDLD++PV+DL+IDGADEVDPF+NLVKGRGGSLLREKM+EGA KKFVVI
Sbjct:    91 QEQALSLGIPLSDLDAHPVIDLSIDGADEVDPFLNLVKGRGGSLLREKMIEGASKKFVVI 150

Query:   148 VDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLR 194
             VD+SK+V H+GGS LA+PVE+VP+CWKFTA++L+ L E  GC A LR
Sbjct:   151 VDDSKMVKHIGGSKLALPVEIVPFCWKFTAEKLRSLLEGYGCEANLR 197
GO:0004751 "ribose-5-phosphate isomerase activity" evidence=IEA;IDA
GO:0005737 "cytoplasm" evidence=ISM;IDA
GO:0009052 "pentose-phosphate shunt, non-oxidative branch" evidence=IEA
GO:0008219 "cell death" evidence=IMP
GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IMP
TAIR|locus:2026296 RSW10 "RADIAL SWELLING 10" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2084898 EMB3119 "EMBRYO DEFECTIVE 3119" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|BA_2791 BA_2791 "ribose 5-phosphate isomerase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-041114-24 rpia "ribose 5-phosphate isomerase A (ribose 5-phosphate epimerase)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|P49247 RPIA "Ribose-5-phosphate isomerase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0276711 rpiA "ribose-5-phosphate isomerase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|J9NX73 RPIA "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|A2TLM1 RPIA "Ribose-5-phosphate isomerase" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1STC1 RPIA "Ribose-5-phosphate isomerase" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9ZU38RPIA_ARATH5, ., 3, ., 1, ., 60.82280.87430.6566yesno
Q72J47RPIA_THET25, ., 3, ., 1, ., 60.50290.81400.7136yesno
B8FL28RPIA_DESAA5, ., 3, ., 1, ., 60.56120.77380.6695yesno
Q5FQ98RPIA_GLUOX5, ., 3, ., 1, ., 60.50670.72360.6233yesno
Q2JSC9RPIA_SYNJA5, ., 3, ., 1, ., 60.50290.81400.7043yesno
B8G2V0RPIA_CHLAD5, ., 3, ., 1, ., 60.52660.74870.6286yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer5.3.1.60.824
3rd Layer5.3.10.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00024479001
SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (319 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00016307001
SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (286 aa)
•    •• 0.640
GSVIVG00020537001
SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (222 aa)
•    •• 0.514
GSVIVG00038435001
SubName- Full=Chromosome chr16 scaffold_94, whole genome shotgun sequence; (620 aa)
•    •• 0.506
GSVIVG00026404001
SubName- Full=Chromosome chr15 scaffold_37, whole genome shotgun sequence; (620 aa)
•    •• 0.490
GSVIVG00002492001
SubName- Full=Chromosome chr2 scaffold_132, whole genome shotgun sequence; (306 aa)
     •• 0.483
GSVIVG00021207001
SubName- Full=Chromosome chr1 scaffold_22, whole genome shotgun sequence; (280 aa)
     •• 0.442
GSVIVG00014074001
SubName- Full=Chromosome chr16 scaffold_10, whole genome shotgun sequence; (174 aa)
••    • 0.434
GSVIVG00028552001
SubName- Full=Putative uncharacterized protein (Chromosome chr7 scaffold_44, whole genome shotg [...] (423 aa)
•     • 0.425
GSVIVG00035677001
RecName- Full=Phosphoglycerate kinase; EC=2.7.2.3; (401 aa)
•     • 0.403

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query199
PLN02384264 PLN02384, PLN02384, ribose-5-phosphate isomerase 1e-127
cd01398213 cd01398, RPI_A, RPI_A: Ribose 5-phosphate isomeras 1e-78
PRK00702220 PRK00702, PRK00702, ribose-5-phosphate isomerase A 1e-76
TIGR00021218 TIGR00021, rpiA, ribose 5-phosphate isomerase 2e-76
COG0120227 COG0120, RpiA, Ribose 5-phosphate isomerase [Carbo 3e-67
pfam06026172 pfam06026, Rib_5-P_isom_A, Ribose 5-phosphate isom 3e-56
PRK13978228 PRK13978, PRK13978, ribose-5-phosphate isomerase A 4e-39
cd00458169 cd00458, SugarP_isomerase, SugarP_isomerase: Sugar 3e-04
pfam00455162 pfam00455, DeoRC, DeoR C terminal sensor domain 0.001
COG1349253 COG1349, GlpR, Transcriptional regulators of sugar 0.003
>gnl|CDD|215215 PLN02384, PLN02384, ribose-5-phosphate isomerase Back     alignment and domain information 
 Score =  359 bits (924), Expect = e-127
 Identities = 168/199 (84%), Positives = 177/199 (88%), Gaps = 6/199 (3%)

Query: 1   MAIA----ISAEKPSSVETGLSPLSSPPPVILTQDELKKIAAYKAVEFVESGMVLGLGTG 56
           MAIA    I +EK S      S LS   PVILTQDELKKIAAYKAVEFVESGMVLGLGTG
Sbjct: 1   MAIAYPPFIGSEKDSMEVG--SMLSPSSPVILTQDELKKIAAYKAVEFVESGMVLGLGTG 58

Query: 57  STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADE 116
           STAKHAVDRIGELLRQGKL NI+GIPTSKKTHEQAVSLGIPLSDLDS+PVVDLAIDGADE
Sbjct: 59  STAKHAVDRIGELLRQGKLKNIIGIPTSKKTHEQAVSLGIPLSDLDSHPVVDLAIDGADE 118

Query: 117 VDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFT 176
           VDP +NLVKGRGGSLLREKM+EGACKKFVVIVDESKLV H+GGSGLAMPVEVVP+CWKFT
Sbjct: 119 VDPNLNLVKGRGGSLLREKMIEGACKKFVVIVDESKLVKHIGGSGLAMPVEVVPFCWKFT 178

Query: 177 AKRLQDLFEDCGCVAKLRT 195
           A++LQ LFE  GCVAKLRT
Sbjct: 179 AEKLQSLFEYAGCVAKLRT 197

Length = 264
>gnl|CDD|238692 cd01398, RPI_A, RPI_A: Ribose 5-phosphate isomerase type A (RPI_A) subfamily; RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway Back     alignment and domain information
>gnl|CDD|234816 PRK00702, PRK00702, ribose-5-phosphate isomerase A; Provisional Back     alignment and domain information
>gnl|CDD|232786 TIGR00021, rpiA, ribose 5-phosphate isomerase Back     alignment and domain information
>gnl|CDD|223198 COG0120, RpiA, Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|218860 pfam06026, Rib_5-P_isom_A, Ribose 5-phosphate isomerase A (phosphoriboisomerase A) Back     alignment and domain information
>gnl|CDD|184433 PRK13978, PRK13978, ribose-5-phosphate isomerase A; Provisional Back     alignment and domain information
>gnl|CDD|238258 cd00458, SugarP_isomerase, SugarP_isomerase: Sugar Phosphate Isomerase family; includes type A ribose 5-phosphate isomerase (RPI_A), glucosamine-6-phosphate (GlcN6P) deaminase, and 6-phosphogluconolactonase (6PGL) Back     alignment and domain information
>gnl|CDD|201239 pfam00455, DeoRC, DeoR C terminal sensor domain Back     alignment and domain information
>gnl|CDD|224268 COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 199
cd01398213 RPI_A RPI_A: Ribose 5-phosphate isomerase type A ( 100.0
PRK00702220 ribose-5-phosphate isomerase A; Provisional 100.0
TIGR00021218 rpiA ribose 5-phosphate isomerase. This model desc 100.0
PLN02384264 ribose-5-phosphate isomerase 100.0
PRK13978228 ribose-5-phosphate isomerase A; Provisional 99.97
PF00455161 DeoRC: DeoR C terminal sensor domain; InterPro: IP 99.97
COG0120227 RpiA Ribose 5-phosphate isomerase [Carbohydrate tr 99.96
PRK10906252 DNA-binding transcriptional repressor GlpR; Provis 99.96
PRK10681252 DNA-binding transcriptional repressor DeoR; Provis 99.96
PRK13509251 transcriptional repressor UlaR; Provisional 99.95
PRK09802269 DNA-binding transcriptional regulator AgaR; Provis 99.95
PRK10434256 srlR DNA-bindng transcriptional repressor SrlR; Pr 99.95
PRK10411240 DNA-binding transcriptional activator FucR; Provis 99.95
COG1349253 GlpR Transcriptional regulators of sugar metabolis 99.94
KOG3075261 consensus Ribose 5-phosphate isomerase [Carbohydra 99.89
PF06026173 Rib_5-P_isom_A: Ribose 5-phosphate isomerase A (ph 99.81
COG1184301 GCD2 Translation initiation factor 2B subunit, eIF 98.25
TIGR00524303 eIF-2B_rel eIF-2B alpha/beta/delta-related unchara 98.03
PRK08335275 translation initiation factor IF-2B subunit alpha; 97.89
TIGR00511301 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e 97.82
PRK08535310 translation initiation factor IF-2B subunit delta; 97.8
PRK05720344 mtnA methylthioribose-1-phosphate isomerase; Revie 97.67
TIGR00512331 salvage_mtnA S-methyl-5-thioribose-1-phosphate iso 97.66
KOG1466313 consensus Translation initiation factor 2B, alpha 97.6
PRK05772363 translation initiation factor IF-2B subunit alpha; 97.5
PRK06371329 translation initiation factor IF-2B subunit alpha; 97.29
PRK06036339 translation initiation factor IF-2B subunit alpha; 97.23
PF01008282 IF-2B: Initiation factor 2 subunit family; InterPr 97.17
COG2057225 AtoA Acyl CoA:acetate/3-ketoacid CoA transferase, 97.08
PRK08334356 translation initiation factor IF-2B subunit beta; 96.74
TIGR02428207 pcaJ_scoB_fam 3-oxoacid CoA-transferase, B subunit 96.45
PRK06372253 translation initiation factor IF-2B subunit delta; 96.14
PRK09920219 acetyl-CoA:acetoacetyl-CoA transferase subunit alp 95.51
TIGR02429222 pcaI_scoA_fam 3-oxoacid CoA-transferase, A subunit 94.75
PF02550198 AcetylCoA_hydro: Acetyl-CoA hydrolase/transferase 94.63
TIGR03458 485 YgfH_subfam succinate CoA transferases. A closely 94.45
PF04198255 Sugar-bind: Putative sugar-binding domain; InterPr 94.1
COG1788220 AtoD Acyl CoA:acetate/3-ketoacid CoA transferase, 93.8
COG2390321 DeoR Transcriptional regulator, contains sigma fac 92.77
KOG1467556 consensus Translation initiation factor 2B, delta 91.08
cd00458169 SugarP_isomerase SugarP_isomerase: Sugar Phosphate 90.89
TIGR01584492 citF citrate lyase, alpha subunit. This is a model 90.16
PRK15418318 transcriptional regulator LsrR; Provisional 88.63
TIGR01584 492 citF citrate lyase, alpha subunit. This is a model 88.09
KOG1465353 consensus Translation initiation factor 2B, beta s 84.33
COG0182346 Predicted translation initiation factor 2B subunit 83.39
PF01144217 CoA_trans: Coenzyme A transferase; InterPro: IPR00 81.44
COG0427 501 ACH1 Acetyl-CoA hydrolase [Energy production and c 80.13
>cd01398 RPI_A RPI_A: Ribose 5-phosphate isomerase type A (RPI_A) subfamily; RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway Back     alignment and domain information 
Probab=100.00  E-value=1.4e-35  Score=249.21  Aligned_cols=158  Identities=58%  Similarity=0.916  Sum_probs=142.3

Q ss_pred             HHHHHHHHHHhcCcCCCEEEECcChhHHHHHHHHhchhhcCCCCCEEEECCcHHHHHHHHhCCCceEecCCCccccEEEE
Q 029100           33 LKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAID  112 (199)
Q Consensus        33 ~K~~IA~~Aa~lI~dgdtIfLdsGTT~~~la~~L~~~~~~~~l~~ltVvTnSl~~a~~l~~~g~~v~~l~~~~~~D~aFi  112 (199)
                      .|++||++|+++|++||+||||+|||+.+++++|+++...+. .++|+||||+.++..+.+.+++++.+.+.+++|+||+
T Consensus         1 ~K~~IA~~A~~~I~~g~~I~ldsGST~~~l~~~L~~~~~~~~-~~itvVTnS~~~a~~l~~~~i~vi~lg~~~~~D~af~   79 (213)
T cd01398           1 LKRAAARAAVDYVEDGMVIGLGTGSTVAYFIEALGERVREEG-LNIVGVPTSFQTEELARELGIPLTDLDEVPRLDLAID   79 (213)
T ss_pred             CHHHHHHHHHHhCCCCCEEEECchHHHHHHHHHHHHhhhccC-CCEEEEeCcHHHHHHHHhCCCeEEeCCCccccCEEEE
Confidence            389999999999999999999999999999999976421111 2699999999999888777999999998999999999


Q ss_pred             ccCcccCCCCcccCcchHHHHHHHHHHhcCcEEEEEeCCCCCCCcCCCCcccceEEecCCHHHHHHHHHhhhhccCCeeE
Q 029100          113 GADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAK  192 (199)
Q Consensus       113 g~~gi~~~~~~~~~~~~a~ik~~~i~~~a~k~IlLaD~sKf~~~~g~~~~~~piev~~~~~~~v~~~l~d~~~~~~~~~~  192 (199)
                      ||+|++.++++.++.+++.++++++.++|+++|+|+|||||+++++.  +++|+||.|++|.+|.+.|.+|    |+.++
T Consensus        80 Gad~id~~~~~~~~~~~a~~kek~i~~~a~~~illaD~sK~~~~l~~--~~lPvEV~p~~~~~v~~~l~~~----g~~~~  153 (213)
T cd01398          80 GADEVDPDLNLIKGGGGALLREKIVASAAKKFIVIADESKLVERLGE--FPLPVEVVPFAWSYVARELEKL----GGKPV  153 (213)
T ss_pred             CCCcCCCCcCcccChHHHHHHHHHHHHhcCeEEEEEecchhcccCCC--CCeeEEEChhhHHHHHHHHHHc----CCCcE
Confidence            99999988778888899999999887779999999999999988883  7999999999999999999997    99999


Q ss_pred             EeccC
Q 029100          193 LRTTG  197 (199)
Q Consensus       193 ~r~~~  197 (199)
                      ||.+.
T Consensus       154 ~R~~~  158 (213)
T cd01398         154 LREGS  158 (213)
T ss_pred             EcccC
Confidence            99853

This reaction leads to the conversion of phosphosugars into glycolysis intermediates, which are precursors for the synthesis of amino acids, vitamins, nucleotides, and cell wall components. In plants, RPI is part of the Calvin cycle as ribulose 5-phosphate is the carbon dioxide receptor in the first dark reaction of photosynthesis. There are two unrelated types of RPIs (A and B), which catalyze the same reaction, at least one type of RPI is present in an organism. RPI_A is more widely distributed than RPI_B in bacteria, eukaryotes, and archaea.
>PRK00702 ribose-5-phosphate isomerase A; Provisional Back     alignment and domain information
>TIGR00021 rpiA ribose 5-phosphate isomerase Back     alignment and domain information
>PLN02384 ribose-5-phosphate isomerase Back     alignment and domain information
>PRK13978 ribose-5-phosphate isomerase A; Provisional Back     alignment and domain information
>PF00455 DeoRC: DeoR C terminal sensor domain; InterPro: IPR014036 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism Back     alignment and domain information
>COG0120 RpiA Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional Back     alignment and domain information
>PRK10681 DNA-binding transcriptional repressor DeoR; Provisional Back     alignment and domain information
>PRK13509 transcriptional repressor UlaR; Provisional Back     alignment and domain information
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional Back     alignment and domain information
>PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional Back     alignment and domain information
>PRK10411 DNA-binding transcriptional activator FucR; Provisional Back     alignment and domain information
>COG1349 GlpR Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG3075 consensus Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF06026 Rib_5-P_isom_A: Ribose 5-phosphate isomerase A (phosphoriboisomerase A); InterPro: IPR004788 Ribose 5-phosphate isomerase, also known as phosphoriboisomerase, catalyses the reversible conversion of D-ribose 5-phosphate to D-ribulose 5-phosphate, the first step in the non-oxidative branch of the pentose phosphate pathway [] Back     alignment and domain information
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins Back     alignment and domain information
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated Back     alignment and domain information
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family Back     alignment and domain information
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional Back     alignment and domain information
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed Back     alignment and domain information
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase Back     alignment and domain information
>KOG1466 consensus Translation initiation factor 2B, alpha subunit (eIF-2Balpha/GCN3) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional Back     alignment and domain information
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional Back     alignment and domain information
>PRK06036 translation initiation factor IF-2B subunit alpha; Provisional Back     alignment and domain information
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit Back     alignment and domain information
>COG2057 AtoA Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit [Lipid metabolism] Back     alignment and domain information
>PRK08334 translation initiation factor IF-2B subunit beta; Validated Back     alignment and domain information
>TIGR02428 pcaJ_scoB_fam 3-oxoacid CoA-transferase, B subunit Back     alignment and domain information
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional Back     alignment and domain information
>PRK09920 acetyl-CoA:acetoacetyl-CoA transferase subunit alpha; Provisional Back     alignment and domain information
>TIGR02429 pcaI_scoA_fam 3-oxoacid CoA-transferase, A subunit Back     alignment and domain information
>PF02550 AcetylCoA_hydro: Acetyl-CoA hydrolase/transferase N-terminal domain; InterPro: IPR003702 This family contains several enzymes which take part in pathways involving acetyl-CoA Back     alignment and domain information
>TIGR03458 YgfH_subfam succinate CoA transferases Back     alignment and domain information
>PF04198 Sugar-bind: Putative sugar-binding domain; InterPro: IPR007324 This probable domain is found in bacterial transcriptional regulators such as DeoR and SorC Back     alignment and domain information
>COG1788 AtoD Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [Lipid metabolism] Back     alignment and domain information
>COG2390 DeoR Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription] Back     alignment and domain information
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00458 SugarP_isomerase SugarP_isomerase: Sugar Phosphate Isomerase family; includes type A ribose 5-phosphate isomerase (RPI_A), glucosamine-6-phosphate (GlcN6P) deaminase, and 6-phosphogluconolactonase (6PGL) Back     alignment and domain information
>TIGR01584 citF citrate lyase, alpha subunit Back     alignment and domain information
>PRK15418 transcriptional regulator LsrR; Provisional Back     alignment and domain information
>TIGR01584 citF citrate lyase, alpha subunit Back     alignment and domain information
>KOG1465 consensus Translation initiation factor 2B, beta subunit (eIF-2Bbeta/GCD7) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG0182 Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF01144 CoA_trans: Coenzyme A transferase; InterPro: IPR004165 Coenzyme A (CoA) transferases belong to an evolutionary conserved [, ] family of enzymes catalyzing the reversible transfer of CoA from one carboxylic acid to another Back     alignment and domain information
>COG0427 ACH1 Acetyl-CoA hydrolase [Energy production and conversion] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query199
2f8m_A244 Ribose 5-Phosphate Isomerase From Plasmodium Falcip 2e-36
1uj5_A227 Crystal Structure Of Thermus Thermophilus Ribose-5- 1e-35
1lk5_A229 Structure Of The D-Ribose-5-Phosphate Isomerase Fro 4e-35
1uj4_A227 Crystal Structure Of Thermus Thermophilus Ribose-5- 6e-35
3l7o_A225 Crystal Structure Of Ribose-5-Phosphate Isomerase A 4e-32
4gmk_A228 Crystal Structure Of Ribose 5-Phosphate Isomerase F 1e-30
3hhe_A255 Crystal Structure Of Ribose-5-Phosphate Isomerase A 2e-26
3ixq_A226 Structure Of Ribose 5-Phosphate Isomerase A From Me 1e-25
3enq_A235 Substrate And Inhibitor Complexes Of Ribose 5-Phosp 4e-24
1ks2_A219 Crystal Structure Analysis Of The Rpia, Structural 9e-23
1lkz_A219 Crystal Structure Of D-Ribose-5-Phosphate Isomerase 2e-22
3kwm_A224 Crystal Structure Of Ribose-5-Isomerase A Length = 8e-21
1xtz_A264 Crystal Structure Of The S. Cerevisiae D-Ribose-5-P 4e-20
1m0s_A219 Northeast Structural Genomics Consortium (Nesg Id I 1e-19
3u7j_A239 Crystal Structure Of Ribose-5-Phosphate Isomerase A 8e-19
>pdb|2F8M|A Chain A, Ribose 5-Phosphate Isomerase From Plasmodium Falciparum Length = 244 Back     alignment and structure 
Iteration: 1

 Score =  148 bits (374), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 78/172 (45%), Positives = 115/172 (66%), Gaps = 3/172 (1%)
Query: 30  QDELKKIAAYKAV-EFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTH 88
            D LKKI AYKAV E+V+S M +GLGTGST  + ++RI  LL+ GKL ++V IPTS  T 
Sbjct: 9   MDSLKKIVAYKAVDEYVQSNMTIGLGTGSTVFYVLERIDNLLKSGKLKDVVCIPTSIDTE 68
Query: 89  EQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIV 148
            +A  LGIPL+ L+ +  +D+ IDG DE+D  +NL+KGRGG+L+REK+V  +    ++I 
Sbjct: 69  LKARKLGIPLTTLEKHSNIDITIDGTDEIDLNLNLIKGRGGALVREKLVASSSSLLIIIG 128
Query: 149 DESKLVPH-LGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGAE 199
           DESKL  + LG +G A+P+E++ + ++   + L  ++   GC  K+R    E
Sbjct: 129 DESKLCTNGLGMTG-AVPIEILTFGYEKIIENLLKIYTLKGCTYKIRKRNGE 179
>pdb|1UJ5|A Chain A, Crystal Structure Of Thermus Thermophilus Ribose-5-Phosphate Isomerase Complexed With Ribose-5-Phosphate Length = 227 Back     alignment and structure
>pdb|1LK5|A Chain A, Structure Of The D-Ribose-5-Phosphate Isomerase From Pyrococcus Horikoshii Length = 229 Back     alignment and structure
>pdb|1UJ4|A Chain A, Crystal Structure Of Thermus Thermophilus Ribose-5-phosphate Isomerase Length = 227 Back     alignment and structure
>pdb|3L7O|A Chain A, Crystal Structure Of Ribose-5-Phosphate Isomerase A From Streptococcus Mutans Ua159 Length = 225 Back     alignment and structure
>pdb|4GMK|A Chain A, Crystal Structure Of Ribose 5-Phosphate Isomerase From The Probiotic Bacterium Lactobacillus Salivarius Ucc118 Length = 228 Back     alignment and structure
>pdb|3HHE|A Chain A, Crystal Structure Of Ribose-5-Phosphate Isomerase A From Bartonella Henselae Length = 255 Back     alignment and structure
>pdb|3IXQ|A Chain A, Structure Of Ribose 5-Phosphate Isomerase A From Methanocaldococcus Jannaschii Length = 226 Back     alignment and structure
>pdb|3ENQ|A Chain A, Substrate And Inhibitor Complexes Of Ribose 5-Phosphate Isomerase A From Vibrio Vulnificus Yj016 Length = 235 Back     alignment and structure
>pdb|1KS2|A Chain A, Crystal Structure Analysis Of The Rpia, Structural Genomics, Protein Ec1268. Length = 219 Back     alignment and structure
>pdb|1LKZ|A Chain A, Crystal Structure Of D-Ribose-5-Phosphate Isomerase (Rpia) From Escherichia Coli. Length = 219 Back     alignment and structure
>pdb|3KWM|A Chain A, Crystal Structure Of Ribose-5-Isomerase A Length = 224 Back     alignment and structure
>pdb|1XTZ|A Chain A, Crystal Structure Of The S. Cerevisiae D-Ribose-5-Phosphate Isomerase: Comparison With The Archeal And Bacterial Enzymes Length = 264 Back     alignment and structure
>pdb|1M0S|A Chain A, Northeast Structural Genomics Consortium (Nesg Id Ir21) Length = 219 Back     alignment and structure
>pdb|3U7J|A Chain A, Crystal Structure Of Ribose-5-Phosphate Isomerase A From Burkholderia Thailandensis Length = 239 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query199
2f8m_A244 Ribose 5-phosphate isomerase; structural genomics, 7e-90
1lk5_A229 D-ribose-5-phosphate isomerase; alpha/beta structu 2e-86
3hhe_A255 Ribose-5-phosphate isomerase A; niaid, ssgcid, dec 4e-86
1uj6_A227 Ribose 5-phosphate isomerase; enzyme-inhibitor com 6e-85
3l7o_A225 Ribose-5-phosphate isomerase A; RPIA; 1.70A {Strep 1e-82
1xtz_A264 Ribose-5-phosphate isomerase; yeast; 2.10A {Saccha 2e-81
2pjm_A226 Ribose-5-phosphate isomerase A; 3D-structure, stru 3e-80
1m0s_A219 Ribose-5-phosphate isomerase A; D-ribose 5-phospha 1e-78
1o8b_A219 Ribose 5-phosphate isomerase; RPIA, PSI, protein S 1e-78
3kwm_A224 Ribose-5-phosphate isomerase A; structural genomic 2e-77
3uw1_A239 Ribose-5-phosphate isomerase A; ssgcid, seattle st 3e-77
>2f8m_A Ribose 5-phosphate isomerase; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium; 2.09A {Plasmodium falciparum} Length = 244 Back     alignment and structure
 Score =  262 bits (672), Expect = 7e-90
 Identities = 76/172 (44%), Positives = 112/172 (65%), Gaps = 1/172 (0%)

Query: 29  TQDELKKIAAYKAV-EFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKT 87
             D LKKI AYKAV E+V+S M +GLGTGST  + ++RI  LL+ GKL ++V IPTS  T
Sbjct: 8   HMDSLKKIVAYKAVDEYVQSNMTIGLGTGSTVFYVLERIDNLLKSGKLKDVVCIPTSIDT 67

Query: 88  HEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVI 147
             +A  LGIPL+ L+ +  +D+ IDG DE+D  +NL+KGRGG+L+REK+V  +    ++I
Sbjct: 68  ELKARKLGIPLTTLEKHSNIDITIDGTDEIDLNLNLIKGRGGALVREKLVASSSSLLIII 127

Query: 148 VDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGAE 199
            DESKL  +  G   A+P+E++ + ++   + L  ++   GC  K+R    E
Sbjct: 128 GDESKLCTNGLGMTGAVPIEILTFGYEKIIENLLKIYTLKGCTYKIRKRNGE 179
>1lk5_A D-ribose-5-phosphate isomerase; alpha/beta structure; 1.75A {Pyrococcus horikoshii} SCOP: c.124.1.4 d.58.40.1 PDB: 1lk7_A* Length = 229 Back     alignment and structure
>3hhe_A Ribose-5-phosphate isomerase A; niaid, ssgcid, decode, SBRI, UW, STRU genomics, seattle structural genomics center for infectious; HET: 5RP; 2.30A {Bartonella henselae} Length = 255 Back     alignment and structure
>1uj6_A Ribose 5-phosphate isomerase; enzyme-inhibitor complex, riken structural genomics/proteomi initiative, RSGI, structural genomics; HET: A5P; 1.74A {Thermus thermophilus} SCOP: c.124.1.4 d.58.40.1 PDB: 1uj5_A* 1uj4_A* Length = 227 Back     alignment and structure
>3l7o_A Ribose-5-phosphate isomerase A; RPIA; 1.70A {Streptococcus mutans} Length = 225 Back     alignment and structure
>1xtz_A Ribose-5-phosphate isomerase; yeast; 2.10A {Saccharomyces cerevisiae} Length = 264 Back     alignment and structure
>1m0s_A Ribose-5-phosphate isomerase A; D-ribose 5-phosphate isomerase, northeast structural genomics consortium, IR21, structural genomics, PSI; HET: CIT; 1.90A {Haemophilus influenzae} SCOP: c.124.1.4 d.58.40.1 Length = 219 Back     alignment and structure
>1o8b_A Ribose 5-phosphate isomerase; RPIA, PSI, protein ST initiative, MCSG, midwest center for structural genomics; HET: ABF; 1.25A {Escherichia coli} SCOP: c.124.1.4 d.58.40.1 PDB: 1lkz_A 1ks2_A* 3enq_A 3env_A* 3enw_A* Length = 219 Back     alignment and structure
>3kwm_A Ribose-5-phosphate isomerase A; structural genomics, IDP02119, center for structu genomics of infectious diseases, csgid; 2.32A {Francisella tularensis subsp} Length = 224 Back     alignment and structure
>3uw1_A Ribose-5-phosphate isomerase A; ssgcid, seattle structural genomics center for infectious DI isomerase, ribose isomerase; HET: R5P; 1.71A {Burkholderia thailandensis} PDB: 3u7j_A* Length = 239 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query199
1lk5_A229 D-ribose-5-phosphate isomerase; alpha/beta structu 100.0
1m0s_A219 Ribose-5-phosphate isomerase A; D-ribose 5-phospha 100.0
2pjm_A226 Ribose-5-phosphate isomerase A; 3D-structure, stru 100.0
3l7o_A225 Ribose-5-phosphate isomerase A; RPIA; 1.70A {Strep 100.0
3hhe_A255 Ribose-5-phosphate isomerase A; niaid, ssgcid, dec 100.0
2f8m_A244 Ribose 5-phosphate isomerase; structural genomics, 100.0
1o8b_A219 Ribose 5-phosphate isomerase; RPIA, PSI, protein S 100.0
1uj6_A227 Ribose 5-phosphate isomerase; enzyme-inhibitor com 100.0
3kwm_A224 Ribose-5-phosphate isomerase A; structural genomic 100.0
1xtz_A264 Ribose-5-phosphate isomerase; yeast; 2.10A {Saccha 100.0
3uw1_A239 Ribose-5-phosphate isomerase A; ssgcid, seattle st 100.0
4gmk_A228 Ribose-5-phosphate isomerase A; D-ribose-5-phospha 99.97
3ixq_A226 Ribose-5-phosphate isomerase A; structural genomic 99.97
1vb5_A276 Translation initiation factor EIF-2B; 2.20A {Pyroc 99.33
2w48_A315 Sorbitol operon regulator; SORC, activator, repres 98.3
2o0m_A345 Transcriptional regulator, SORC family; structural 98.23
3ecs_A315 Translation initiation factor EIF-2B subunit alpha 97.89
3d3u_A439 4-hydroxybutyrate COA-transferase; alpha-beta prot 97.89
1poi_B260 Glutaconate coenzyme A-transferase; COA, glutamate 97.79
3a11_A338 Translation initiation factor EIF-2B, delta subun; 97.58
3rrl_B207 Succinyl-COA:3-ketoacid-coenzyme A transferase SU; 97.43
1t9k_A347 Probable methylthioribose-1-phosphate isomerase; s 97.41
2yvk_A374 Methylthioribose-1-phosphate isomerase; methionine 97.34
1t5o_A351 EIF2BD, translation initiation factor EIF2B, subun 97.32
2a0u_A383 Initiation factor 2B; SGPP, structural genomics, P 97.06
1k6d_A220 Acetate COA-transferase alpha subunit; structural 97.0
3rrl_A235 Succinyl-COA:3-ketoacid-coenzyme A transferase SU; 96.93
3cdk_A241 Succinyl-COA:3-ketoacid-coenzyme A transferase sub 96.76
3d3u_A 439 4-hydroxybutyrate COA-transferase; alpha-beta prot 96.55
3qli_A 455 Coenzyme A transferase; COEN transferase; 1.90A {Y 95.55
2g39_A 497 Acetyl-COA hydrolase; coenzyme A transferase, stru 95.1
4eu9_A 514 Succinyl-COA:acetate coenzyme A transferase; HET: 94.99
2oas_A 436 ATOA, 4-hydroxybutyrate coenzyme A transferase; al 94.66
3nze_A267 Putative transcriptional regulator, sugar-binding; 94.62
3gk7_A 448 4-hydroxybutyrate COA-transferase; alpha/beta prot 94.37
2nvv_A 506 Acetyl-COA hydrolase/transferase family protein; a 94.2
3eh7_A 434 4-hydroxybutyrate COA-transferase; citrate lyase, 94.04
3kv1_A267 Transcriptional repressor; alpha-beta structure, s 93.63
2ahu_A 531 Putative enzyme YDIF; COA transferase, glutamyl th 93.57
3efb_A266 Probable SOR-operon regulator; alpha-beta-alpha sa 93.45
1w2w_B191 5-methylthioribose-1-phosphate isomerase; EIF2B, m 93.07
2gnp_A266 Transcriptional regulator; structural genomics, MC 92.46
2hj0_A 519 Putative citrate lyase, ALFA subunit; alpha beta p 92.29
2okg_A255 Central glycolytic gene regulator; alpha/beta/alph 91.85
1stz_A338 Heat-inducible transcription repressor HRCA homol; 91.65
2oas_A436 ATOA, 4-hydroxybutyrate coenzyme A transferase; al 91.21
2r5f_A264 Transcriptional regulator, putative; transcription 88.84
3qli_A455 Coenzyme A transferase; COEN transferase; 1.90A {Y 86.28
1poi_A317 Glutaconate coenzyme A-transferase; COA, glutamate 86.05
3k6m_A481 Succinyl-COA:3-ketoacid-coenzyme A transferase 1, 85.27
1xr4_A 509 Putative citrate lyase alpha chain/citrate-ACP TR; 83.7
3gk7_A448 4-hydroxybutyrate COA-transferase; alpha/beta prot 83.4
3k6m_A 481 Succinyl-COA:3-ketoacid-coenzyme A transferase 1, 81.84
3eh7_A434 4-hydroxybutyrate COA-transferase; citrate lyase, 81.27
>1lk5_A D-ribose-5-phosphate isomerase; alpha/beta structure; 1.75A {Pyrococcus horikoshii} SCOP: c.124.1.4 d.58.40.1 PDB: 1lk7_A* Back     alignment and structure
Probab=100.00  E-value=8.2e-38  Score=264.31  Aligned_cols=163  Identities=44%  Similarity=0.746  Sum_probs=144.7

Q ss_pred             CChHHHHHHHHHHHHhcCcCCCEEEECcChhHHHHHHHHhchhhcCCCCCEEEECCcHHHHHHHHhCCCceEecCCCccc
Q 029100           28 LTQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVV  107 (199)
Q Consensus        28 ~~~~e~K~~IA~~Aa~lI~dgdtIfLdsGTT~~~la~~L~~~~~~~~l~~ltVvTnSl~~a~~l~~~g~~v~~l~~~~~~  107 (199)
                      +++.++|++||++|+++|+|||+||||+|||+++++++|.++.+...+.++|+||||+.++..+...|++++.+.+-+++
T Consensus         1 m~~~~~K~~IA~~Aa~~I~dg~~I~LdsGST~~~~a~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~gi~vi~l~~~~~~   80 (229)
T 1lk5_A            1 MNVEEMKKIAAKEALKFIEDDMVIGLGTGSTTAYFIKLLGEKLKRGEISDIVGVPTSYQAKLLAIEHDIPIASLDQVDAI   80 (229)
T ss_dssp             CCHHHHHHHHHHHHGGGCCTTCEEEECCSHHHHHHHHHHHHHHHTTSSCSCEEEESSHHHHHHHHHTTCCBCCGGGCSCE
T ss_pred             CChHHHHHHHHHHHHHhCCCCCEEEEcChHHHHHHHHHHhhhhhhccCCCEEEECCcHHHHHHHHhCCCeEEEeCCcccC
Confidence            35788999999999999999999999999999999999975421111125899999999999998889998888654599


Q ss_pred             cEEEEccCcccCCCCcccCcchHHHHHHHHHHhcCcEEEEEeCCCCCCCcCCCCcccceEEecCCHHHHHHHHHhhhhcc
Q 029100          108 DLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDC  187 (199)
Q Consensus       108 D~aFig~~gi~~~~~~~~~~~~a~ik~~~i~~~a~k~IlLaD~sKf~~~~g~~~~~~piev~~~~~~~v~~~l~d~~~~~  187 (199)
                      |+||+||+||+.+++++.+.+++.+|++++.++|+++|+|+|||||++++|.. +|+|+||.|++|.+|.+.|.+|    
T Consensus        81 D~af~Gadgid~~~g~~~~~~~a~~kekiv~~~A~~~ivlaD~SK~~~~lg~~-~~lPvEV~p~~~~~v~~~l~~l----  155 (229)
T 1lk5_A           81 DVAVDGADEVDPNLNLIKGRGAALTMEKIIEYRAGTFIVLVDERKLVDYLCQK-MPVPIEVIPQAWKAIIEELSIF----  155 (229)
T ss_dssp             EEEEECCSEECTTCCEECCTTSCHHHHHHHHHTEEEEEEEEEGGGBCSSTTSS-CCEEEEECGGGHHHHHHHGGGG----
T ss_pred             CEEEECCCeECCCCCeecCHHHHHHHHHHHHHhcCCeEEEEchhhhhhhcCCC-CCEEEEECcchHHHHHHHHHHc----
Confidence            99999999999988888888999999998887899999999999999989853 8999999999999999999997    


Q ss_pred             CCeeEEec
Q 029100          188 GCVAKLRT  195 (199)
Q Consensus       188 ~~~~~~r~  195 (199)
                      |+.|+||.
T Consensus       156 g~~~~~R~  163 (229)
T 1lk5_A          156 NAKAELRM  163 (229)
T ss_dssp             TCEEEECB
T ss_pred             CCCeEEee
Confidence            99999996
>1m0s_A Ribose-5-phosphate isomerase A; D-ribose 5-phosphate isomerase, northeast structural genomics consortium, IR21, structural genomics, PSI; HET: CIT; 1.90A {Haemophilus influenzae} SCOP: c.124.1.4 d.58.40.1 Back     alignment and structure
>3l7o_A Ribose-5-phosphate isomerase A; RPIA; 1.70A {Streptococcus mutans} Back     alignment and structure
>3hhe_A Ribose-5-phosphate isomerase A; niaid, ssgcid, decode, SBRI, UW, STRU genomics, seattle structural genomics center for infectious; HET: 5RP; 2.30A {Bartonella henselae} Back     alignment and structure
>2f8m_A Ribose 5-phosphate isomerase; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium; 2.09A {Plasmodium falciparum} Back     alignment and structure
>1o8b_A Ribose 5-phosphate isomerase; RPIA, PSI, protein ST initiative, MCSG, midwest center for structural genomics; HET: ABF; 1.25A {Escherichia coli} SCOP: c.124.1.4 d.58.40.1 PDB: 1lkz_A 1ks2_A* 3enq_A 3env_A* 3enw_A* Back     alignment and structure
>1uj6_A Ribose 5-phosphate isomerase; enzyme-inhibitor complex, riken structural genomics/proteomi initiative, RSGI, structural genomics; HET: A5P; 1.74A {Thermus thermophilus} SCOP: c.124.1.4 d.58.40.1 PDB: 1uj5_A* 1uj4_A* Back     alignment and structure
>3kwm_A Ribose-5-phosphate isomerase A; structural genomics, IDP02119, center for structu genomics of infectious diseases, csgid; 2.32A {Francisella tularensis subsp} Back     alignment and structure
>1xtz_A Ribose-5-phosphate isomerase; yeast; 2.10A {Saccharomyces cerevisiae} Back     alignment and structure
>3uw1_A Ribose-5-phosphate isomerase A; ssgcid, seattle structural genomics center for infectious DI isomerase, ribose isomerase; HET: R5P; 1.71A {Burkholderia thailandensis} PDB: 3u7j_A* Back     alignment and structure
>4gmk_A Ribose-5-phosphate isomerase A; D-ribose-5-phosphate isomerase family, ribose 5-phosphate isomerisation; 1.72A {Lactobacillus salivarius} Back     alignment and structure
>3ixq_A Ribose-5-phosphate isomerase A; structural genomics, pentose phosphate pathway, carbon fixation, NPPSFA; HET: PGO; 1.78A {Methanocaldococcus jannaschii} Back     alignment and structure
>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii} SCOP: c.124.1.5 Back     alignment and structure
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae} Back     alignment and structure
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8 Back     alignment and structure
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens} Back     alignment and structure
>3d3u_A 4-hydroxybutyrate COA-transferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.80A {Porphyromonas gingivalis} Back     alignment and structure
>1poi_B Glutaconate coenzyme A-transferase; COA, glutamate, protein fermentation; 2.50A {Acidaminococcus fermentans} SCOP: c.124.1.3 Back     alignment and structure
>3a11_A Translation initiation factor EIF-2B, delta subun; isomerase, hexamer, rossmann fold; 2.50A {Thermococcus kodakaraensis} PDB: 3a9c_A* 3vm6_A* Back     alignment and structure
>3rrl_B Succinyl-COA:3-ketoacid-coenzyme A transferase SU; MCSG,PSI-biology, structural genomics, midwest center for ST genomics; 2.29A {Helicobacter pylori} PDB: 3cdk_B Back     alignment and structure
>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural genomics, translation initiation factor, AIF-2B subunit, PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5 Back     alignment and structure
>2yvk_A Methylthioribose-1-phosphate isomerase; methionine salvage pathway,; HET: MRU; 2.40A {Bacillus subtilis} PDB: 2yrf_A* Back     alignment and structure
>1t5o_A EIF2BD, translation initiation factor EIF2B, subunit DELT; subunit delta, structural GEN PSI, protein structure initiative; 1.90A {Archaeoglobus fulgidus} SCOP: c.124.1.5 Back     alignment and structure
>2a0u_A Initiation factor 2B; SGPP, structural genomics, PSI, protein structure initiative eukaryotic initiation factor; 2.10A {Leishmania major} SCOP: c.124.1.5 Back     alignment and structure
>1k6d_A Acetate COA-transferase alpha subunit; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.90A {Escherichia coli} SCOP: c.124.1.2 Back     alignment and structure
>3rrl_A Succinyl-COA:3-ketoacid-coenzyme A transferase SU; MCSG,PSI-biology, structural genomics, midwest center for ST genomics; 2.29A {Helicobacter pylori} Back     alignment and structure
>3cdk_A Succinyl-COA:3-ketoacid-coenzyme A transferase subunit A; CO-expressed complex, hetero-tetramer, structural genomics, PSI-2; 2.59A {Bacillus subtilis} Back     alignment and structure
>3d3u_A 4-hydroxybutyrate COA-transferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.80A {Porphyromonas gingivalis} Back     alignment and structure
>3qli_A Coenzyme A transferase; COEN transferase; 1.90A {Yersinia pestis} PDB: 3qlk_A 3s8d_A Back     alignment and structure
>2g39_A Acetyl-COA hydrolase; coenzyme A transferase, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: c.124.1.2 c.124.1.2 Back     alignment and structure
>4eu9_A Succinyl-COA:acetate coenzyme A transferase; HET: COA; 1.48A {Acetobacter aceti} PDB: 4eua_A* 4eu3_A* 4eu4_A* 4eu5_A* 4eu6_A* 4eu7_A* 4eu8_A* 4eub_A* 4euc_A* 4eud_A* Back     alignment and structure
>2oas_A ATOA, 4-hydroxybutyrate coenzyme A transferase; alpha beta protein, structural genomics, PSI-2, protein STRU initiative; HET: COA; 2.40A {Shewanella oneidensis} Back     alignment and structure
>3nze_A Putative transcriptional regulator, sugar-binding; structural genomics, PSI-2, protein structure initiative; 1.70A {Arthrobacter aurescens} SCOP: c.124.1.0 Back     alignment and structure
>3gk7_A 4-hydroxybutyrate COA-transferase; alpha/beta protein; HET: SPD; 1.85A {Clostridium aminobutyricum} PDB: 3qdq_A* Back     alignment and structure
>2nvv_A Acetyl-COA hydrolase/transferase family protein; alpha beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Porphyromonas gingivalis} Back     alignment and structure
>3eh7_A 4-hydroxybutyrate COA-transferase; citrate lyase, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.05A {Porphyromonas gingivalis} Back     alignment and structure
>3kv1_A Transcriptional repressor; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.70A {Vibrio fischeri} SCOP: c.124.1.0 Back     alignment and structure
>2ahu_A Putative enzyme YDIF; COA transferase, glutamyl thioester, structural genomi montreal-kingston bacterial structural genomics initiative; 1.90A {Escherichia coli} SCOP: c.124.1.3 c.124.1.2 PDB: 2ahv_A* 2ahw_A* Back     alignment and structure
>3efb_A Probable SOR-operon regulator; alpha-beta-alpha sandwich, center for structural genomics of infectious diseases, csgid, transcription; HET: MSE; 2.00A {Shigella flexneri 2A} SCOP: c.124.1.8 Back     alignment and structure
>1w2w_B 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5 Back     alignment and structure
>2gnp_A Transcriptional regulator; structural genomics, MCSG, APC84799, streptococcus pneumonia PSI, protein structure initiative; 1.65A {Streptococcus pneumoniae} SCOP: c.124.1.8 Back     alignment and structure
>2hj0_A Putative citrate lyase, ALFA subunit; alpha beta protein., structural genomics, PSI-2, protein STR initiative; HET: CIT; 2.70A {Streptococcus mutans} Back     alignment and structure
>2okg_A Central glycolytic gene regulator; alpha/beta/alpha sandwich, rossmann-like fold, structural genomics, PSI-2, protein structure initiative; HET: MSE G3H; 1.65A {Bacillus subtilis} SCOP: c.124.1.8 PDB: 3bxe_A* 3bxf_A* 3bxg_A* 3bxh_A* Back     alignment and structure
>1stz_A Heat-inducible transcription repressor HRCA homol; circe element, structural genomics, BSGC structure FUN NIH, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.51 d.110.2.3 Back     alignment and structure
>2oas_A ATOA, 4-hydroxybutyrate coenzyme A transferase; alpha beta protein, structural genomics, PSI-2, protein STRU initiative; HET: COA; 2.40A {Shewanella oneidensis} Back     alignment and structure
>2r5f_A Transcriptional regulator, putative; transcription regulator, sugar-binding domain, structural GE PFAM04198, PSI-2; 2.10A {Pseudomonas syringae PV} SCOP: c.124.1.8 Back     alignment and structure
>3qli_A Coenzyme A transferase; COEN transferase; 1.90A {Yersinia pestis} PDB: 3qlk_A 3s8d_A Back     alignment and structure
>1poi_A Glutaconate coenzyme A-transferase; COA, glutamate, protein fermentation; 2.50A {Acidaminococcus fermentans} SCOP: c.124.1.2 Back     alignment and structure
>3k6m_A Succinyl-COA:3-ketoacid-coenzyme A transferase 1, mitochondrial; SCOT, COA transferase, dynamic domain, glycerol, mitochondri transferase; 1.50A {Sus scrofa} PDB: 1m3e_A* 1o9l_A 1ooy_A 2nrc_A 2nrb_A 3oxo_A* 1ooz_A 1ope_A 3dlx_A Back     alignment and structure
>1xr4_A Putative citrate lyase alpha chain/citrate-ACP TR; the midwest center for structural genomics, MCSG, structural genomics; 2.37A {Salmonella typhimurium} SCOP: c.124.1.2 c.124.1.2 Back     alignment and structure
>3gk7_A 4-hydroxybutyrate COA-transferase; alpha/beta protein; HET: SPD; 1.85A {Clostridium aminobutyricum} PDB: 3qdq_A* Back     alignment and structure
>3k6m_A Succinyl-COA:3-ketoacid-coenzyme A transferase 1, mitochondrial; SCOT, COA transferase, dynamic domain, glycerol, mitochondri transferase; 1.50A {Sus scrofa} PDB: 1m3e_A* 1o9l_A 1ooy_A 2nrc_A 2nrb_A 3oxo_A* 1ooz_A 1ope_A 3dlx_A Back     alignment and structure
>3eh7_A 4-hydroxybutyrate COA-transferase; citrate lyase, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.05A {Porphyromonas gingivalis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 199
d1lk5a1149 c.124.1.4 (A:1-130,A:211-229) D-ribose-5-phosphate 2e-43
d1o8ba1124 c.124.1.4 (A:23-126,A:199-218) D-ribose-5-phosphat 1e-36
d1uj4a1151 c.124.1.4 (A:3-131,A:206-227) D-ribose-5-phosphate 3e-36
d1m0sa1147 c.124.1.4 (A:1-126,A:199-219) D-ribose-5-phosphate 8e-34
d1m0sa272 d.58.40.1 (A:127-198) D-ribose-5-phosphate isomera 2e-04
d1uj4a274 d.58.40.1 (A:132-205) D-ribose-5-phosphate isomera 0.002
>d1lk5a1 c.124.1.4 (A:1-130,A:211-229) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 149 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: D-ribose-5-phosphate isomerase (RpiA), catalytic domain
domain: D-ribose-5-phosphate isomerase (RpiA), catalytic domain
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score =  140 bits (353), Expect = 2e-43
 Identities = 65/154 (42%), Positives = 103/154 (66%), Gaps = 6/154 (3%)

Query: 28  LTQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKT 87
           +  +E+KKIAA +A++F+E  MV+GLGTGST  + +  +GE L++G++++IVG+PTS + 
Sbjct: 1   MNVEEMKKIAAKEALKFIEDDMVIGLGTGSTTAYFIKLLGEKLKRGEISDIVGVPTSYQA 60

Query: 88  HEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVI 147
              A+   IP++ LD    +D+A+DGADEVDP +NL+KGRG +L  EK++E     F+V+
Sbjct: 61  KLLAIEHDIPIASLDQVDAIDVAVDGADEVDPNLNLIKGRGAALTMEKIIEYRAGTFIVL 120

Query: 148 VDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQ 181
           VDE KLV +L         ++V    +   K+L+
Sbjct: 121 VDERKLVDYLD------IADIVIVGTREGVKKLE 148
>d1o8ba1 c.124.1.4 (A:23-126,A:199-218) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Escherichia coli [TaxId: 562]} Length = 124 Back     information, alignment and structure
>d1uj4a1 c.124.1.4 (A:3-131,A:206-227) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Thermus thermophilus [TaxId: 274]} Length = 151 Back     information, alignment and structure
>d1m0sa1 c.124.1.4 (A:1-126,A:199-219) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Haemophilus influenzae [TaxId: 727]} Length = 147 Back     information, alignment and structure
>d1m0sa2 d.58.40.1 (A:127-198) D-ribose-5-phosphate isomerase (RpiA), lid domain {Haemophilus influenzae [TaxId: 727]} Length = 72 Back     information, alignment and structure
>d1uj4a2 d.58.40.1 (A:132-205) D-ribose-5-phosphate isomerase (RpiA), lid domain {Thermus thermophilus [TaxId: 274]} Length = 74 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query199
d1uj4a1151 D-ribose-5-phosphate isomerase (RpiA), catalytic d 99.97
d1lk5a1149 D-ribose-5-phosphate isomerase (RpiA), catalytic d 99.97
d1m0sa1147 D-ribose-5-phosphate isomerase (RpiA), catalytic d 99.97
d1o8ba1124 D-ribose-5-phosphate isomerase (RpiA), catalytic d 99.82
d1vb5a_274 Putative eIF-2B subunit 2-like protein PH0440 {Pyr 97.69
d1uj4a274 D-ribose-5-phosphate isomerase (RpiA), lid domain 97.45
d1k6da_219 Acetate:CoA transferase alpha {Escherichia coli [T 97.36
d1m0sa272 D-ribose-5-phosphate isomerase (RpiA), lid domain 97.33
d1t5oa_340 Putative eIF-2B delta-subunit {Archaeon Archaeoglo 97.26
d1lk5a280 D-ribose-5-phosphate isomerase (RpiA), lid domain 97.26
d1t9ka_340 Probable methylthioribose-1-phosphate isomerase TM 97.17
d1o8ba272 D-ribose-5-phosphate isomerase (RpiA), lid domain 97.02
d2g39a1221 Acetyl-CoA hydrolase (PA5445) {Pseudomonas aerugin 96.32
d1ooya2242 Succinate:CoA transferase, N-terminal domain {Pig 95.44
g1w2w.1402 Putative methylthioribose-1-phosphate isomerase Yp 95.3
d2a0ua1374 Initiation factor 2b {Leishmania major [TaxId: 566 94.88
d2gnpa1262 Transcriptional regulator SP0247 {Streptococcus pn 94.85
d3efba1255 Sor-operon regulator SorC {Shigella flexneri [TaxI 94.41
d2okga1250 Central glycolytic gene regulator CggR {Bacillus s 94.17
d1ooya1221 Succinate:CoA transferase, C-terminal domain {Pig 93.61
d2r5fa1258 Transcriptional regulator PSPTO2395 {Pseudomonas s 93.27
d1poib_260 Glutaconate:CoA transferase beta {Acidaminococcus 92.01
d2ahua2273 Putative enzyme YdiF N-terminal domain {Escherichi 90.28
d2o0ma1247 Transcriptional regulator EF1965 {Enterococcus fae 90.1
d2ahua1247 Putative enzyme YdiF C-terminal domain {Escherichi 89.35
d1poia_317 Glutaconate:CoA transferase alpha {Acidaminococcus 81.89
d1xr4a2269 Putative citrate lyase alpha chain, citF2 {Salmone 80.53
>d1uj4a1 c.124.1.4 (A:3-131,A:206-227) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: D-ribose-5-phosphate isomerase (RpiA), catalytic domain
domain: D-ribose-5-phosphate isomerase (RpiA), catalytic domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.97  E-value=6.4e-32  Score=212.73  Aligned_cols=146  Identities=38%  Similarity=0.430  Sum_probs=118.0

Q ss_pred             ChHHHHHHHHHHHHhcCcCCCEEEECcChhHHHHHHHHhchhhcCCCCCEEEECCcHHHHHHHHhCCCceEecCCCcccc
Q 029100           29 TQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVD  108 (199)
Q Consensus        29 ~~~e~K~~IA~~Aa~lI~dgdtIfLdsGTT~~~la~~L~~~~~~~~l~~ltVvTnSl~~a~~l~~~g~~v~~l~~~~~~D  108 (199)
                      .++.+|++||++|++||+|||+||||+|||+++++++|.++.......++..+++.+....... .|......++++++|
T Consensus         2 ~~~~~K~~IA~~A~~~I~dg~~I~LdsGTT~~~la~~l~~~~~~~~~~~~i~~~~~~~~~~~~~-~g~~~~~~l~~~~~D   80 (151)
T d1uj4a1           2 PLESYKKEAAHAAIAYVQDGMVVGLGTGSTARYAVLELARRLREGELKGVVGVPTSRATEELAK-REGIPLVDLPPEGVD   80 (151)
T ss_dssp             TTHHHHHHHHHHHHTTCCTTCEEEECCSHHHHHHHHHHHHHHHTTSSCSCEEEESSHHHHHHHH-HTTCCBCCCCTTCEE
T ss_pred             CHHHHHHHHHHHHHHhCCCCCEEEECchHHHHHHHHHHHHHHhhcccceeeeccchhhHHHHHh-cCCccccccccceec
Confidence            4678899999999999999999999999999999999977543222236788888888777665 455555556679999


Q ss_pred             EEEEccCcccCCCCc-ccCcchHHHHHHHHHHhcCcEEEEEeCCCCCCCcCCC-CcccceEEecCCHHHH
Q 029100          109 LAIDGADEVDPFMNL-VKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGS-GLAMPVEVVPYCWKFT  176 (199)
Q Consensus       109 ~aFig~~gi~~~~~~-~~~~~~a~ik~~~i~~~a~k~IlLaD~sKf~~~~g~~-~~~~piev~~~~~~~v  176 (199)
                      +||+||+|++.++++ ..+.+++.+++.+ .++|+++|+|+|||||.++++.. .+|+|+||.|+++++|
T Consensus        81 ~aF~g~~gvd~~~g~~~~~~~e~~~kk~~-~~~A~~~ilLaD~SKlv~~L~~~~~~p~piev~p~~~~~v  149 (151)
T d1uj4a1          81 LAIDGADEIAPGLALIKGMGGALLREKIV-ERVAKEFIVIADHTKKVPVLLFVGMATRALVAGPFGVEEL  149 (151)
T ss_dssp             EEEECCSEEEGGGEEECCTTSCHHHHHHH-HHTEEEEEEEEEGGGBCSSSEECSCCSEEEEEETTEEEEE
T ss_pred             EEEEccccccCCcCcccCCHHHHHHHHHH-HHhcCeEEEEEECCceecccccCCCCCEeEEEccchHhhc
Confidence            999999999998875 4566778887655 45799999999999998887532 2699999999987543
>d1lk5a1 c.124.1.4 (A:1-130,A:211-229) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1m0sa1 c.124.1.4 (A:1-126,A:199-219) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1o8ba1 c.124.1.4 (A:23-126,A:199-218) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vb5a_ c.124.1.5 (A:) Putative eIF-2B subunit 2-like protein PH0440 {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1uj4a2 d.58.40.1 (A:132-205) D-ribose-5-phosphate isomerase (RpiA), lid domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1k6da_ c.124.1.2 (A:) Acetate:CoA transferase alpha {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1m0sa2 d.58.40.1 (A:127-198) D-ribose-5-phosphate isomerase (RpiA), lid domain {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1t5oa_ c.124.1.5 (A:) Putative eIF-2B delta-subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1lk5a2 d.58.40.1 (A:131-210) D-ribose-5-phosphate isomerase (RpiA), lid domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1t9ka_ c.124.1.5 (A:) Probable methylthioribose-1-phosphate isomerase TM0911 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1o8ba2 d.58.40.1 (A:127-198) D-ribose-5-phosphate isomerase (RpiA), lid domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2g39a1 c.124.1.2 (A:3-223) Acetyl-CoA hydrolase (PA5445) {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1ooya2 c.124.1.2 (A:1-242) Succinate:CoA transferase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2a0ua1 c.124.1.5 (A:10-383) Initiation factor 2b {Leishmania major [TaxId: 5664]} Back     information, alignment and structure
>d2gnpa1 c.124.1.8 (A:56-317) Transcriptional regulator SP0247 {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d3efba1 c.124.1.8 (A:11-265) Sor-operon regulator SorC {Shigella flexneri [TaxId: 623]} Back     information, alignment and structure
>d2okga1 c.124.1.8 (A:89-338) Central glycolytic gene regulator CggR {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1ooya1 c.124.1.3 (A:261-481) Succinate:CoA transferase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2r5fa1 c.124.1.8 (A:59-316) Transcriptional regulator PSPTO2395 {Pseudomonas syringae [TaxId: 317]} Back     information, alignment and structure
>d1poib_ c.124.1.3 (B:) Glutaconate:CoA transferase beta {Acidaminococcus fermentans [TaxId: 905]} Back     information, alignment and structure
>d2ahua2 c.124.1.2 (A:4-276) Putative enzyme YdiF N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2o0ma1 c.124.1.8 (A:95-341) Transcriptional regulator EF1965 {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
>d2ahua1 c.124.1.3 (A:283-529) Putative enzyme YdiF C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1poia_ c.124.1.2 (A:) Glutaconate:CoA transferase alpha {Acidaminococcus fermentans [TaxId: 905]} Back     information, alignment and structure
>d1xr4a2 c.124.1.2 (A:237-505) Putative citrate lyase alpha chain, citF2 {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure