Citrus Sinensis ID: 029179

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------
Protein Sequence
MSLNALVRLPLSSSRTHEDVLVKHSPFSSRTTQKPNGRERQRRVLVVQAKGKRGLQARQFQRPPPPSLPKIEDDGNPRFVIFIRMANVYLWYPLSIITGGTTAKIMVAAKDNFLGKYIYKDTLARNLAAVIYRDEKEIQKTAFKQFRVLQSATEFRYGYKLVVMLLYLLSILHFTWIYFLPLKPCIYTKVNCDITCA
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccEEEEEEEEcccccHHHHHHcccccccccccccccccEEEEEEEEccccEEEEEEEEEccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccccccccEEEEEEEEEEccccccccccccEEEcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHccccccccccccEEEEEcccccccccccccccHHcEEEEEEEcccccHHHHHHcccccccccccccccccEEEEEEEEccccEEEEccEccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHccHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEccccccc
Coil and Loop (DISEMBL)
mslnalvrlplsssrthedvlvkhspfssrttqkpngrerQRRVLVVQAkgkrglqarqfqrppppslpkieddgnprFVIFIRMANVYLwyplsiitggTTAKIMVAAKDNFlgkyiykdTLARNLAAVIYRDEKEIQKTAFKQFRVLQSATEFRYGYKLVVMLLYLLSILHFTwiyflplkpciytkvncditca
Flexible Loop (DISEMBL)
mslnalvrlplsssrthedvlvkhspfssrttqkpngrerqrrVLVVqakgkrglqarqfqrppppslpkieddgnPRFVIFIRMANVYLWYPLSIITGGTTAKIMVAAKDNFLGKYIYKDTLARNLAAVIYRDEKEIQKTAFKQFRVLQSATEFRYGYKLVVMLLYLLSILHFTWIYFLPLKPCIYTKVNCDITCA
Low Complexity Region (SEG)
MSLNALVRLPLSSSRTHEDVLVKHSPFSSRTTQKPNGRERQRRVLVVQAKGKRGLQARQFQRPPPPSLPKIEDDGNPRFVIFIRMANVYLWYPLSIITGGTTAKIMVAAKDNFLGKYIYKDTLARNLAAVIYRDEKEIQKTAFKQFRVLQSATEFRYGYKlvvmllyllsilHFTWIYFLPLKPCIYTKVNCDITCA
Disordered region (IsUnstruct)
****************************************************************************PRFVIFIRMANVYLWYPLSIITGGTTAKIMVAAKDNFLGKYIYKDTLARNLAAVIYRDEKEIQKTAFKQFRVLQSATEFRYGYKLVVMLLYLLSILHFTWIYFLPLKPCIYTKVNCDITC*
Disordered Region (DISOPRED)
****ALV*LPL*******************************************************************FVIFIRMANVYLWYPLSIITGGTTAKIMVAAKDNFLGKYIYKDTLARNLAAVIYRDEKEIQKTAFKQFRVLQSATEFRYGYKLVVMLLYLLSILHFTWIYFLPLKPCIYTKVNCDITCA
Disordered Region (DISEMBL)
MSLNALVRLPLSSSRTHED*********************QRRVLVVQAKGKRGLQARQFQRPPPPSLPKIEDDGNPRFVIFIRMANVYLWYPLSIITGGTTAKIMVAAKDNFLGKYIYKDTLARNLAAVIYRDEKEIQKTAFKQFRVLQSATEFRYGYKLVVMLLYLLSILHFTWIYFLPLKPCIYTKVNCDITCA
Disordered Region (DISPRO)
****ALVRLPLSSSRTHEDVLVKHSPFSS*********ERQRRVLVVQAKGKRG***********PSLPKIEDDGNPRFVIFIRMANVYLWYPLSIITGGTTAKIMVAAKDNFLGKYIYKDTLARNLAAVIYRDEKEIQKTAFKQFRVLQSATEFRYGYKLVVMLLYLLSILHFTWIYFLPLKPCIYTKVNCDITCA
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSLNALVRLPLSSSRTHEDVLVKHSPFSSRTTQKPNGRERQRRVLVVQAKGKRGLQARQFQRPPPPSLPKIEDDGNPRFVIFIRMANVYLWYPLSIITGGTTAKIMVAAKDNFLGKYIYKDTLARNLAAVIYRDEKEIQKTAFKQFRVLQSATEFRYGYKLVVMLLYLLSILHFTWIYFLPLKPCIYTKVNCDITCA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	197
449450401	231	PREDICTED: uncharacterized protein LOC10	0.939	0.800	0.723	9e-69
449450403	228	PREDICTED: uncharacterized protein LOC10	0.939	0.811	0.723	1e-68
255547908	233	oligopeptidase, putative [Ricinus commun	0.817	0.690	0.786	2e-68
359473697	229	PREDICTED: uncharacterized protein LOC10	0.796	0.685	0.779	4e-67
224107689	237	predicted protein [Populus trichocarpa]	0.812	0.675	0.760	8e-65
351723561	239	uncharacterized protein LOC100306628 [Gl	0.822	0.677	0.732	1e-64
30697554	230	uncharacterized protein [Arabidopsis tha	0.817	0.7	0.754	1e-64
30697556	231	uncharacterized protein [Arabidopsis tha	0.817	0.696	0.754	1e-64
334183724	229	uncharacterized protein [Arabidopsis tha	0.812	0.698	0.753	5e-64
357463123	227	hypothetical protein MTR_3g086040 [Medic	0.802	0.696	0.719	4e-58

>gi|449450401|ref|XP_004142951.1| PREDICTED: uncharacterized protein LOC101203734 isoform 1 [Cucumis sativus] gi|449494502|ref|XP_004159563.1| PREDICTED: uncharacterized protein LOC101226204 isoform 1 [Cucumis sativus]

 Score =  265 bits (676), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 136/188 (72%), Positives = 155/188 (82%), Gaps = 3/188 (1%)

Query: 1   MSLNALVRLPLSSSRTHEDVLVKHSPFSSRTTQKPNGRERQRRVLVVQAKGKRGLQARQF 60
           MSLNALVRLPLS+S+  ED +V+HS FS+RT  KP+     RR L+V+AKGK+G+Q+R  
Sbjct: 5   MSLNALVRLPLSNSKLLEDGVVRHSLFSARTMHKPH--HTYRRPLLVEAKGKKGMQSRLS 62

Query: 61  QRPPPPSLPKIEDDGNPRFVIFIRMANVYLWYPLSIITGGTTAKIMVAAKDNFLGKYIYK 120
           QRP PP LPKIEDDGNP+FVIFIRMANVYLWYPLS+I GGTTAKIMVAAKDNF+GKYIYK
Sbjct: 63  QRPGPPPLPKIEDDGNPKFVIFIRMANVYLWYPLSLINGGTTAKIMVAAKDNFVGKYIYK 122

Query: 121 DTLARNLAAVIYRDEKEIQKTAFKQFRVLQSATEFRYGYKLVVMLLYLLSILHFTWIYFL 180
           DTLARNLAAVIYRDEKEIQKTAFKQFRVL++ATEFRYGYKLV     L S L  T +  L
Sbjct: 123 DTLARNLAAVIYRDEKEIQKTAFKQFRVLRTATEFRYGYKLVEN-GNLRSALSTTDVIEL 181

Query: 181 PLKPCIYT 188
           P +  + T
Sbjct: 182 PTQDQLKT 189

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450403|ref|XP_004142952.1| PREDICTED: uncharacterized protein LOC101203734 isoform 2 [Cucumis sativus] gi|449494506|ref|XP_004159564.1| PREDICTED: uncharacterized protein LOC101226204 isoform 2 [Cucumis sativus]

 Score =  265 bits (676), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 136/188 (72%), Positives = 155/188 (82%), Gaps = 3/188 (1%)

Query: 1   MSLNALVRLPLSSSRTHEDVLVKHSPFSSRTTQKPNGRERQRRVLVVQAKGKRGLQARQF 60
           MSLNALVRLPLS+S+  ED +V+HS FS+RT  KP+     RR L+V+AKGK+G+Q+R  
Sbjct: 5   MSLNALVRLPLSNSKLLEDGVVRHSLFSARTMHKPH--HTYRRPLLVEAKGKKGMQSRLS 62

Query: 61  QRPPPPSLPKIEDDGNPRFVIFIRMANVYLWYPLSIITGGTTAKIMVAAKDNFLGKYIYK 120
           QRP PP LPKIEDDGNP+FVIFIRMANVYLWYPLS+I GGTTAKIMVAAKDNF+GKYIYK
Sbjct: 63  QRPGPPPLPKIEDDGNPKFVIFIRMANVYLWYPLSLINGGTTAKIMVAAKDNFVGKYIYK 122

Query: 121 DTLARNLAAVIYRDEKEIQKTAFKQFRVLQSATEFRYGYKLVVMLLYLLSILHFTWIYFL 180
           DTLARNLAAVIYRDEKEIQKTAFKQFRVL++ATEFRYGYKLV     L S L  T +  L
Sbjct: 123 DTLARNLAAVIYRDEKEIQKTAFKQFRVLRTATEFRYGYKLVEN-GNLRSALSTTDVIEL 181

Query: 181 PLKPCIYT 188
           P +  + T
Sbjct: 182 PTQDQLKT 189

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547908|ref|XP_002515011.1| oligopeptidase, putative [Ricinus communis] gi|223546062|gb|EEF47565.1| oligopeptidase, putative [Ricinus communis]

 Score =  264 bits (674), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 129/164 (78%), Positives = 146/164 (89%), Gaps = 3/164 (1%)

Query: 1   MSLNALVRLPLSSSRT--HEDVLVKHSPFSSRTTQKPNGRERQRRVLVVQAKGKRGLQAR 58
           +SLNALVRLPLS+S    HED + KH+ FS+RT       ++Q  +LVV+AKGKRG+Q+R
Sbjct: 5   LSLNALVRLPLSNSSRIHHEDGVAKHTLFSTRTVTLQKSLKKQT-LLVVKAKGKRGMQSR 63

Query: 59  QFQRPPPPSLPKIEDDGNPRFVIFIRMANVYLWYPLSIITGGTTAKIMVAAKDNFLGKYI 118
           QFQRPP PSLPKIEDDGNP+F+IFIRMANVYLWYPLS++TGGTTAKIMVAAKDNFLGKYI
Sbjct: 64  QFQRPPAPSLPKIEDDGNPKFLIFIRMANVYLWYPLSLVTGGTTAKIMVAAKDNFLGKYI 123

Query: 119 YKDTLARNLAAVIYRDEKEIQKTAFKQFRVLQSATEFRYGYKLV 162
           YK+TL RNLAAVIYRDEKEIQKTAFKQFRVL+SATEFRYGYKLV
Sbjct: 124 YKNTLDRNLAAVIYRDEKEIQKTAFKQFRVLRSATEFRYGYKLV 167

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359473697|ref|XP_002272215.2| PREDICTED: uncharacterized protein LOC100256260 [Vitis vinifera]

 Score =  259 bits (662), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 127/163 (77%), Positives = 144/163 (88%), Gaps = 6/163 (3%)

Query: 1   MSLNA-LVRLPLSSSRTHEDVLVKHSPFSSRTTQKPNGRERQRRVLVVQAKGKRGLQARQ 59
           +SLNA LVR PLS+SR  ED  +KHS FS+RT  K     +++R LVV+AKGKRG+Q RQ
Sbjct: 6   LSLNAALVRTPLSNSRASEDGFIKHSIFSTRTVPKS----QKKRALVVEAKGKRGMQGRQ 61

Query: 60  FQRPPPPSLPKIEDDGNPRFVIFIRMANVYLWYPLSIITGGTTAKIMVAAKDNFLGKYIY 119
           FQR PPP LPKIEDDGNP+FVIFIRMANVYLWYPLS+ITGGTTAKIMVAAKDNFLGKYIY
Sbjct: 62  FQRQPPP-LPKIEDDGNPKFVIFIRMANVYLWYPLSLITGGTTAKIMVAAKDNFLGKYIY 120

Query: 120 KDTLARNLAAVIYRDEKEIQKTAFKQFRVLQSATEFRYGYKLV 162
           +DT+ARNLAAVIY+DEKEIQKTAF+Q+RVL+SA EFRYGYKLV
Sbjct: 121 RDTIARNLAAVIYKDEKEIQKTAFRQYRVLRSAKEFRYGYKLV 163

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224107689|ref|XP_002314565.1| predicted protein [Populus trichocarpa] gi|118487840|gb|ABK95743.1| unknown [Populus trichocarpa] gi|222863605|gb|EEF00736.1| predicted protein [Populus trichocarpa]

 Score =  251 bits (642), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 130/171 (76%), Positives = 146/171 (85%), Gaps = 11/171 (6%)

Query: 1   MSLNALVRLPLSSSRT---HEDV--LVKHSPFSSRTTQ---KPNGRERQRRVLVVQAKGK 52
           MSLNALVRLP  SSRT   HED   L+KH+ FS+R +     P  + +   +LVV+AKGK
Sbjct: 5   MSLNALVRLP--SSRTMLLHEDGGGLLKHTLFSTRKSTAQTSPKKQGQGHMLLVVKAKGK 62

Query: 53  RGLQARQFQRPPPP-SLPKIEDDGNPRFVIFIRMANVYLWYPLSIITGGTTAKIMVAAKD 111
           +G+Q RQFQRPPP  SLPKIEDDGNP+F+IFIR+ANVYLWYPLS+ITGGTTAKIMVAAKD
Sbjct: 63  KGMQTRQFQRPPPTLSLPKIEDDGNPKFLIFIRVANVYLWYPLSLITGGTTAKIMVAAKD 122

Query: 112 NFLGKYIYKDTLARNLAAVIYRDEKEIQKTAFKQFRVLQSATEFRYGYKLV 162
           NFLGKYIYKDTLARNLAAVIY+DEKEIQKTAFKQ RVL+SATEFRYGYKLV
Sbjct: 123 NFLGKYIYKDTLARNLAAVIYKDEKEIQKTAFKQHRVLRSATEFRYGYKLV 173

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723561|ref|NP_001237795.1| uncharacterized protein LOC100306628 [Glycine max] gi|255629119|gb|ACU14904.1| unknown [Glycine max]

 Score =  251 bits (641), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 123/168 (73%), Positives = 146/168 (86%), Gaps = 6/168 (3%)

Query: 1   MSLNALVRLPLSSSRTHED---VLVKHSPFSSRTTQKPNGRER---QRRVLVVQAKGKRG 54
           MSLNALVRLPLS+SR H+D   ++++HS FSSR  Q+     +   + +V VV+AKGK+G
Sbjct: 5   MSLNALVRLPLSNSRFHDDAAPMIIRHSLFSSRKQQQQQQSYKVPQRHQVFVVEAKGKKG 64

Query: 55  LQARQFQRPPPPSLPKIEDDGNPRFVIFIRMANVYLWYPLSIITGGTTAKIMVAAKDNFL 114
           + +RQFQR  PP LPKIEDDGNP+FVIFIRMANVYLWYPLSI++GGTTAKIMVAAKDNFL
Sbjct: 65  MMSRQFQRNAPPPLPKIEDDGNPKFVIFIRMANVYLWYPLSIVSGGTTAKIMVAAKDNFL 124

Query: 115 GKYIYKDTLARNLAAVIYRDEKEIQKTAFKQFRVLQSATEFRYGYKLV 162
           GKYIYKDTL RNLAAVIYRDEKE+QK+AFKQ+RVL++AT+FRYGYKLV
Sbjct: 125 GKYIYKDTLDRNLAAVIYRDEKEVQKSAFKQYRVLRTATDFRYGYKLV 172

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30697554|ref|NP_850972.1| uncharacterized protein [Arabidopsis thaliana] gi|15215606|gb|AAK91348.1| At1g67700/F12A21_30 [Arabidopsis thaliana] gi|21435985|gb|AAM51570.1| At1g67700/F12A21_30 [Arabidopsis thaliana] gi|332196562|gb|AEE34683.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  251 bits (640), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 123/163 (75%), Positives = 140/163 (85%), Gaps = 2/163 (1%)

Query: 1   MSLNALVRLPLSSSRTHEDV-LVKHSPFSSRTTQKPNGRERQRRVLVVQAKGKRGLQARQ 59
           MSLNAL RLPL ++   E+V L +HS FSSRT  +    +++R V VV+AKGK+G+ ARQ
Sbjct: 5   MSLNALTRLPLKNTGRFEEVGLARHSLFSSRTACRETAVQQRRMVFVVEAKGKKGMAARQ 64

Query: 60  FQRPPPPSLPKIEDDGNPRFVIFIRMANVYLWYPLSIITGGTTAKIMVAAKDNFLGKYIY 119
           +QR PPP +PKIEDDGNPRFVIFIRMANVYLWYPLSII GGTTAKIMVAAKDN LGKYIY
Sbjct: 65  YQRTPPP-MPKIEDDGNPRFVIFIRMANVYLWYPLSIIAGGTTAKIMVAAKDNLLGKYIY 123

Query: 120 KDTLARNLAAVIYRDEKEIQKTAFKQFRVLQSATEFRYGYKLV 162
           KDT+ARN+AAVIYRDEKEIQKTA KQ RVL++ATEFRYGYKLV
Sbjct: 124 KDTIARNIAAVIYRDEKEIQKTAIKQHRVLRTATEFRYGYKLV 166

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30697556|ref|NP_564903.3| uncharacterized protein [Arabidopsis thaliana] gi|21554073|gb|AAM63154.1| unknown [Arabidopsis thaliana] gi|222423377|dbj|BAH19661.1| AT1G67700 [Arabidopsis thaliana] gi|332196563|gb|AEE34684.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  251 bits (640), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 123/163 (75%), Positives = 140/163 (85%), Gaps = 2/163 (1%)

Query: 1   MSLNALVRLPLSSSRTHEDV-LVKHSPFSSRTTQKPNGRERQRRVLVVQAKGKRGLQARQ 59
           MSLNAL RLPL ++   E+V L +HS FSSRT  +    +++R V VV+AKGK+G+ ARQ
Sbjct: 5   MSLNALTRLPLKNTGRFEEVGLARHSLFSSRTACRETAVQQRRMVFVVEAKGKKGMAARQ 64

Query: 60  FQRPPPPSLPKIEDDGNPRFVIFIRMANVYLWYPLSIITGGTTAKIMVAAKDNFLGKYIY 119
           +QR PPP +PKIEDDGNPRFVIFIRMANVYLWYPLSII GGTTAKIMVAAKDN LGKYIY
Sbjct: 65  YQRTPPP-MPKIEDDGNPRFVIFIRMANVYLWYPLSIIAGGTTAKIMVAAKDNLLGKYIY 123

Query: 120 KDTLARNLAAVIYRDEKEIQKTAFKQFRVLQSATEFRYGYKLV 162
           KDT+ARN+AAVIYRDEKEIQKTA KQ RVL++ATEFRYGYKLV
Sbjct: 124 KDTIARNIAAVIYRDEKEIQKTAIKQHRVLRTATEFRYGYKLV 166

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334183724|ref|NP_001185346.1| uncharacterized protein [Arabidopsis thaliana] gi|332196564|gb|AEE34685.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  249 bits (635), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 122/162 (75%), Positives = 139/162 (85%), Gaps = 2/162 (1%)

Query: 1   MSLNALVRLPLSSSRTHEDV-LVKHSPFSSRTTQKPNGRERQRRVLVVQAKGKRGLQARQ 59
           MSLNAL RLPL ++   E+V L +HS FSSRT  +    +++R V VV+AKGK+G+ ARQ
Sbjct: 5   MSLNALTRLPLKNTGRFEEVGLARHSLFSSRTACRETAVQQRRMVFVVEAKGKKGMAARQ 64

Query: 60  FQRPPPPSLPKIEDDGNPRFVIFIRMANVYLWYPLSIITGGTTAKIMVAAKDNFLGKYIY 119
           +QR PPP +PKIEDDGNPRFVIFIRMANVYLWYPLSII GGTTAKIMVAAKDN LGKYIY
Sbjct: 65  YQRTPPP-MPKIEDDGNPRFVIFIRMANVYLWYPLSIIAGGTTAKIMVAAKDNLLGKYIY 123

Query: 120 KDTLARNLAAVIYRDEKEIQKTAFKQFRVLQSATEFRYGYKL 161
           KDT+ARN+AAVIYRDEKEIQKTA KQ RVL++ATEFRYGYKL
Sbjct: 124 KDTIARNIAAVIYRDEKEIQKTAIKQHRVLRTATEFRYGYKL 165

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357463123|ref|XP_003601843.1| hypothetical protein MTR_3g086040 [Medicago truncatula] gi|355490891|gb|AES72094.1| hypothetical protein MTR_3g086040 [Medicago truncatula] gi|388521481|gb|AFK48802.1| unknown [Medicago truncatula]

 Score =  229 bits (585), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 118/164 (71%), Positives = 134/164 (81%), Gaps = 6/164 (3%)

Query: 1   MSLNALVRLPLSSS--RTHEDVLVKHSPFSSRTTQKPNGRERQRRVLVVQAKGKRGLQAR 58
           MSLNAL+  PLSSS  R H D L        RT +    + +   VLVV+AK K+G+ +R
Sbjct: 5   MSLNALLHPPLSSSSSRFHNDSLFSMPRQFPRTQR----QHQHHHVLVVEAKSKKGMMSR 60

Query: 59  QFQRPPPPSLPKIEDDGNPRFVIFIRMANVYLWYPLSIITGGTTAKIMVAAKDNFLGKYI 118
           Q+QR PPP LPKIEDDGNP+FV+FIRMANVYLWYPLSI++GGTTAKIMVAAKDNFLGK+I
Sbjct: 61  QYQRQPPPPLPKIEDDGNPKFVVFIRMANVYLWYPLSIVSGGTTAKIMVAAKDNFLGKFI 120

Query: 119 YKDTLARNLAAVIYRDEKEIQKTAFKQFRVLQSATEFRYGYKLV 162
           YKDTL RNLAAVIYRDEKEIQK+AFKQ RVL+SATEFRYGYKLV
Sbjct: 121 YKDTLDRNLAAVIYRDEKEIQKSAFKQHRVLKSATEFRYGYKLV 164

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	197
TAIR|locus:2008615	231	AT1G67700 "AT1G67700" [Arabido	0.807	0.688	0.751	1e-59

TAIR|locus:2008615 AT1G67700 "AT1G67700" [Arabidopsis thaliana (taxid:3702)]

 Score = 612 (220.5 bits), Expect = 1.0e-59, P = 1.0e-59
 Identities = 121/161 (75%), Positives = 138/161 (85%)

Query:     1 MSLNALVRLPLSSSRTHEDV-LVKHSPFSSRTTQKPNGRERQRRVLVVQAKGKRGLQARQ 59
             MSLNAL RLPL ++   E+V L +HS FSSRT  +    +++R V VV+AKGK+G+ ARQ
Sbjct:     5 MSLNALTRLPLKNTGRFEEVGLARHSLFSSRTACRETAVQQRRMVFVVEAKGKKGMAARQ 64

Query:    60 FQRPPPPSLPKIEDDGNPRFVIFIRMANVYLWYPLSIITGGTTAKIMVAAKDNFLGKYIY 119
             +QR PPP +PKIEDDGNPRFVIFIRMANVYLWYPLSII GGTTAKIMVAAKDN LGKYIY
Sbjct:    65 YQRTPPP-MPKIEDDGNPRFVIFIRMANVYLWYPLSIIAGGTTAKIMVAAKDNLLGKYIY 123

Query:   120 KDTLARNLAAVIYRDEKEIQKTAFKQFRVLQSATEFRYGYK 160
             KDT+ARN+AAVIYRDEKEIQKTA KQ RVL++ATEFRYGYK
Sbjct:   124 KDTIARNIAAVIYRDEKEIQKTAIKQHRVLRTATEFRYGYK 164


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.138   0.418    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      197       185   0.00080  110 3  11 22  0.38    32
                                                     31  0.41    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  592 (63 KB)
  Total size of DFA:  156 KB (2094 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.98u 0.09s 17.07t   Elapsed:  00:00:00
  Total cpu time:  16.98u 0.09s 17.07t   Elapsed:  00:00:00
  Start:  Fri May 10 09:16:05 2013   End:  Fri May 10 09:16:05 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0015979 "photosynthesis" evidence=RCA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	197
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	85.05

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=85.05  E-value=1.3  Score=41.08  Aligned_cols=60  Identities=23%  Similarity=0.230  Sum_probs=52.3

Q ss_pred             CCeEEEEEEecCcc--ceeeeeeeecchhHHHHHHhhhcchhhhhhhhHHHHHHHHHHhhCHHHHHHHHHhhcccccccc
Q 029179           76 NPRFVIFIRMANVY--LWYPLSIITGGTTAKIMVAAKDNFLGKYIYKDTLARNLAAVIYRDEKEIQKTAFKQFRVLQSAT  153 (197)
Q Consensus        76 nP~FvIFVR~k~~~--~WYPl~vV~Ggt~Ak~lV~a~dn~lgk~iyk~tL~~nIa~aIYkDe~~L~k~a~r~yP~Lk~ak  153 (197)
                      .|-=+||+|--|..  .|||.|+=|.=.                                  .++|+.++|..|-|..+.
T Consensus       255 ~p~a~v~LepE~~~~~~~y~~GfsTsLp----------------------------------~~~Q~~~~r~IpGLE~a~  300 (443)
T 3g5s_A          255 EPFAVVQLRQEDKAGRMWSLVGFQTGLK----------------------------------WPEQKRLIQMIPGLENAE  300 (443)
T ss_dssp             CCSEEEEEEECSTTSCEEEETTCCCCBC----------------------------------HHHHHHHHTTSTTCTTCC
T ss_pred             ccceEEEEeecCCCCCEEeCCceecCCC----------------------------------HHHHHHHHhcCcChhhCe
Confidence            45569999998665  999999887654                                  778999999999999999


Q ss_pred             ceeeeEEEeeeecc-cc
Q 029179          154 EFRYGYKLVVMLLY-LL  169 (197)
Q Consensus       154 efEYGYKl~dk~ln-p~  169 (197)
                      -++|||.+.+.-+| |+
T Consensus       301 ~~r~G~~~ey~~i~sP~  317 (443)
T 3g5s_A          301 IVRYGVMHRNTYLNAPR  317 (443)
T ss_dssp             EEECCEEEEEEEECHHH
T ss_pred             eeeCcEeecCceecChh
Confidence            99999999999988 75

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00