Citrus Sinensis ID: 029181

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------
Protein Sequence
MAITCSSSSLICFSSDFASSSLNLFYSKPNIIIRTHLLFCPRNQKPLNSSVSDKRRNRVSFFSGFSTKRVESFKEELFQAIKPLDRGAEASPEDQARVDQIARKLEAVNDIKEPLKSNLLNGKWELLYTTSQSLLQTKRPKFLRPNGKIYQAINIDTLRAQNIETWPFFNQATANLVPLNSKRVAVKFDYFRIADTN
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHcccccccccccccccEEEEEEEcccccccccccccccccccEEEEEEccccEEEEEEEcccccEEEEEEEEccccEEEEEEEEEEEEccc
Secondary Structure Prediction (SSPRO)
ccEEcccccHEEEcccccccccccccccccccEccEEEEcccccccccccccccccccEEEcccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHccccccccHHHccccEEEEEEcHHHHHcccccccccccccEEEEEEccccEEEEEEcccccccEEEEEEEccccEEEEEEEEEEEEccc
Coil and Loop (DISEMBL)
maitcsssslicfssdfassslnlfyskpniiirthllfcprnqkplnssvsdkrrnrvsffsgfSTKRVESFKEELFQAIkpldrgaeaspedQARVDQIARKLEAVNDIkeplksnllngkWELLYTTSQSLlqtkrpkflrpngkiyqaiNIDTLRaqnietwpffnqatanlvplnskrvavkfdyfriadtn
Flexible Loop (DISEMBL)
maitcsssslicFSSDFASSSLNLFYSKPNIIIRTHLLFCPRNQkplnssvsdkrrnrvsffsgfstkrveSFKEELFQAIKpldrgaeaspedqARVDQIARKLEavndikeplksnllngkwELLYTTSQSllqtkrpkflrpngKIYQAINIDTLRAQNIETWPFFNQATAnlvplnskrvavkfdyfriadtn
Low Complexity Region (SEG)
MAITCsssslicfssdfassslnlfYSKPNIIIRTHLLFCPRNQKPLNSSVSDKRRNRVSFFSGFSTKRVESFKEELFQAIKPLDRGAEASPEDQARVDQIARKLEAVNDIKEPLKSNLLNGKWEllyttsqsllqtKRPKFLRPNGKIYQAINIDTLRAQNIETWPFFNQATANLVPLNSKRVAVKFDYFRIADTN
Disordered region (IsUnstruct)
********SLICFSSDFASSSLNLFYSKPNIIIRTHLLFCPR*******************F********************************************AVNDIKEPLKSNLLNGKWELLYTTSQSLLQTKRPKFLRPNGKIYQAINIDTLRAQNIETWPFFNQATANLVPLNSKRVAVKFDYFRIA***
Disordered Region (DISOPRED)
************************************************************************FKEELFQAIKPLDRGAEASPEDQARVDQIARKLEAVNDIKEPLKSNLLNGKWELLYTTSQSLLQTKRPKFLRPNGKIYQAINIDTLRAQNIETWPFFNQATANLVPLNSKRVAVKFDYFRIADT*
Disordered Region (DISEMBL)
MAITCSSSSLICFSSDFASSSLNLFYSKPNIIIRTHLLFCPRNQKPLNSSVSDKRRNRVSFFSGFSTKRVESFKEELFQAIKPLDR*********ARVDQIARKLEAVNDIKEPLKSNLLNGKWELLYTTSQSLLQTKRPKFLRPNGKIYQAINIDTLRAQNIETWPFFNQATANLVPLNSKRVAVKFDYFRIADTN
Disordered Region (DISPRO)
****CSSSSLICFSSDFASSSLNLFYSKPNIIIRTHLLFCPRNQ***********RNRVSFFSGFSTKRVESFKEELFQAIKPLDRGAEASPEDQARVDQIARKLEAVNDIKEPLKSNLLNGKWELLYTTSQSLLQTKRPKFLRPNGKIYQAINIDTLRAQNIETWPFFNQATANLVPLNSKRVAVKFDYFRIADT*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAITCSSSSLICFSSDFASSSLNLFYSKPNIIIRTHLLFCPRNQKPLNSSVSDKRRNRVSFFSGFSTKRVESFKEELFQAIKPLDRGAEASPEDQARVDQIARKLEAVNDIKEPLKSNLLNGKWELLYTTSQSLLQTKRPKFLRPNGKIYQAINIDTLRAQNIETWPFFNQATANLVPLNSKRVAVKFDYFRIADTN
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	197	2.2.26 [Sep-21-2011]
Q9LU85	242	Probable plastid-lipid-as	yes	no	0.715	0.582	0.562	4e-42
Q6DBN2	234	Probable plastid-lipid-as	no	no	0.710	0.598	0.560	9e-40
Q6K439	319	Probable plastid-lipid-as	no	no	0.609	0.376	0.311	0.0002
O81439	318	Probable plastid-lipid-as	no	no	0.654	0.405	0.299	0.0005

>sp|Q9LU85|PAP4_ARATH Probable plastid-lipid-associated protein 4, chloroplastic OS=Arabidopsis thaliana GN=PAP4 PE=1 SV=1

 Score =  171 bits (432), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 85/151 (56%), Positives = 112/151 (74%), Gaps = 10/151 (6%)

Query: 52  SDKRRNRV----SFFSGFSTK-----RVESFKEELFQAIKPLDRGAEASPEDQARVDQIA 102
            D+ R RV    SF   F T+     + +  K+EL +AI+PL+RGA ASP+DQ R+DQ+A
Sbjct: 44  GDRERLRVQAIFSFPPAFLTRNGRAEKQKQLKQELLEAIEPLERGATASPDDQLRIDQLA 103

Query: 103 RKLEAVNDIKEPLKSNLLNGKWELLYTTSQSLLQTKRPKFLRPNGKIYQAINIDTLRAQN 162
           RK+EAVN  KEPLKS+L+NGKWEL+YTTS S+LQ K+P+FLR     YQ+IN+DTL+ QN
Sbjct: 104 RKVEAVNPTKEPLKSDLVNGKWELIYTTSASILQAKKPRFLRSITN-YQSINVDTLKVQN 162

Query: 163 IETWPFFNQATANLVPLNSKRVAVKFDYFRI 193
           +ETWPF+N  T ++ PLNSK+VAVK   F+I
Sbjct: 163 METWPFYNSVTGDIKPLNSKKVAVKLQVFKI 193

Arabidopsis thaliana (taxid: 3702)

>sp|Q6DBN2|PAP5_ARATH Probable plastid-lipid-associated protein 5, chloroplastic OS=Arabidopsis thaliana GN=PAP5 PE=2 SV=1

 Score =  163 bits (412), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 83/148 (56%), Positives = 109/148 (73%), Gaps = 8/148 (5%)

Query: 52  SDKRRNRV-SFFS-----GFSTKRVESFKEELFQAIKPLDRGAEASPEDQARVDQIARKL 105
            D+ R R+ + FS     G + KR +  K EL +AI+PL+RGA ASP+DQ  +DQ+ARK+
Sbjct: 39  GDRERLRIQAVFSFPPRNGGAEKR-KQLKHELVEAIEPLERGATASPDDQLLIDQLARKV 97

Query: 106 EAVNDIKEPLKSNLLNGKWELLYTTSQSLLQTKRPKFLRPNGKIYQAINIDTLRAQNIET 165
           EAVN  KEPLKS+L+NGKWEL+YTTS ++LQ K+P+FLR +   YQ IN+DTL+ Q +ET
Sbjct: 98  EAVNPTKEPLKSDLINGKWELIYTTSAAILQAKKPRFLR-SLTNYQCINMDTLKVQRMET 156

Query: 166 WPFFNQATANLVPLNSKRVAVKFDYFRI 193
           WPF+N  T +L PLNSK VAVK   F+I
Sbjct: 157 WPFYNSVTGDLTPLNSKTVAVKLQVFKI 184

Arabidopsis thaliana (taxid: 3702)

>sp|Q6K439|PAP2_ORYSJ Probable plastid-lipid-associated protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=PAP2 PE=2 SV=1

 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 61/135 (45%), Gaps = 15/135 (11%)

Query: 67  TKRVESFKEELFQAIKPLDRGAEASPEDQARVDQIARKLEAVNDIKEPLKS-NLLNGKWE 125
           T  V   K +L +A+   +RG  AS E +A V ++  +LEA N    P ++  LLNGKW 
Sbjct: 89  TSEVAELKAKLKEALYGTERGLRASSETRAEVVELITQLEARNPTPAPTEALTLLNGKWI 148

Query: 126 LLYTTSQSLL----QTKRPKFLRPNGKIYQAINIDTLRAQNIETWPFFNQATANLVPLNS 181
           L YT+   L         P+ ++   +I Q I+ +    QN     F        V  N+
Sbjct: 149 LAYTSFSQLFPLLGSGSLPQLVKVE-EISQTIDSENFTVQNC--IKFSGPLATTSVSTNA 205

Query: 182 -------KRVAVKFD 189
                  KRV +KFD
Sbjct: 206 KFEVRSPKRVQIKFD 220

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O81439|PAP1_ARATH Probable plastid-lipid-associated protein 1, chloroplastic OS=Arabidopsis thaliana GN=PAP1 PE=1 SV=1

 Score = 44.7 bits (104), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 65/137 (47%), Gaps = 8/137 (5%)

Query: 66  STKRVESFKEELFQAIKPLDRGAEASPEDQARVDQIARKLEAVNDIKEPLKSN-LLNGKW 124
           S +  E  K  L  ++   DRG   S + +A + ++  +LE+ N    P ++  LLNGKW
Sbjct: 87  SVEETERLKRSLADSLYGTDRGLSVSSDTRAEISELITQLESKNPTPAPNEALFLLNGKW 146

Query: 125 ELLYTTSQSL--LQTKRPKFLRPNGKIYQAINIDTLRAQNIETW--PFFNQA---TANLV 177
            L YT+   L  L ++R + L    +I Q I+ D+   QN   +  PF   +    A   
Sbjct: 147 ILAYTSFVGLFPLLSRRIEPLVKVDEISQTIDSDSFTVQNSVRFAGPFSTTSFSTNAKFE 206

Query: 178 PLNSKRVAVKFDYFRIA 194
             + KRV +KF+   I 
Sbjct: 207 IRSPKRVQIKFEQGVIG 223

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	197
356525936	240	PREDICTED: probable plastid-lipid-associ	0.837	0.687	0.697	3e-62
356557505	245	PREDICTED: probable plastid-lipid-associ	0.725	0.583	0.806	8e-62
298204587	320	unnamed protein product [Vitis vinifera]	0.847	0.521	0.715	3e-60
225448063	256	PREDICTED: probable plastid-lipid-associ	0.847	0.652	0.715	3e-60
357445617	248	hypothetical protein MTR_2g007640 [Medic	0.959	0.762	0.618	1e-59
217073420	248	unknown [Medicago truncatula] gi|3885181	0.959	0.762	0.613	3e-59
224070527	225	predicted protein [Populus trichocarpa]	0.705	0.617	0.780	5e-57
89355891	174	plastid fibrillin 3 [Coffea canephora]	0.634	0.718	0.8	8e-55
356525938	175	PREDICTED: probable plastid-lipid-associ	0.634	0.714	0.726	4e-51
255575408	262	structural molecule, putative [Ricinus c	0.979	0.736	0.558	6e-51

>gi|356525936|ref|XP_003531577.1| PREDICTED: probable plastid-lipid-associated protein 4, chloroplastic-like isoform 1 [Glycine max]

 Score =  243 bits (621), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 122/175 (69%), Positives = 142/175 (81%), Gaps = 10/175 (5%)

Query: 23  NLFYSKPNIIIRTHLLFCPRNQKPLNSSVSDKRRNRVSFFSGFST--KRVESFKEELFQA 80
           +LF S P  +  THL+        L  + S K  N VSFF GF T  + V+S K +L++A
Sbjct: 27  SLFSSSPQKLNTTHLI--------LQVADSGKWSNMVSFFPGFITEGRDVQSLKVDLYEA 78

Query: 81  IKPLDRGAEASPEDQARVDQIARKLEAVNDIKEPLKSNLLNGKWELLYTTSQSLLQTKRP 140
           I PLDRGAEA+PEDQ RVDQIARKLEAVN +KEPLKS+LLNGKWEL YTTSQS+LQT+RP
Sbjct: 79  IAPLDRGAEATPEDQQRVDQIARKLEAVNPVKEPLKSDLLNGKWELFYTTSQSILQTQRP 138

Query: 141 KFLRPNGKIYQAINIDTLRAQNIETWPFFNQATANLVPLNSKRVAVKFDYFRIAD 195
           K LRPNGKIYQAIN+DTLRAQNIETWPF+NQATANLVPLNS+RVAVKFD+F+IA+
Sbjct: 139 KLLRPNGKIYQAINVDTLRAQNIETWPFYNQATANLVPLNSRRVAVKFDFFKIAN 193

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557505|ref|XP_003547056.1| PREDICTED: probable plastid-lipid-associated protein 4, chloroplastic-like [Glycine max]

 Score =  241 bits (616), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 117/145 (80%), Positives = 128/145 (88%), Gaps = 2/145 (1%)

Query: 52  SDKRRNRVSFFSGFSTKR--VESFKEELFQAIKPLDRGAEASPEDQARVDQIARKLEAVN 109
           S K RN VSFF GF TK   V+  K EL++AI PLDRGAEA+PEDQ RVDQIARKLEAVN
Sbjct: 53  SGKWRNMVSFFPGFLTKGSDVQKLKVELYEAIAPLDRGAEATPEDQQRVDQIARKLEAVN 112

Query: 110 DIKEPLKSNLLNGKWELLYTTSQSLLQTKRPKFLRPNGKIYQAINIDTLRAQNIETWPFF 169
            +KEPLKS LLNGKWEL YTTSQS+LQT+RPK LRPNGKIYQAIN+DTLRAQNIETWPF+
Sbjct: 113 PVKEPLKSGLLNGKWELFYTTSQSILQTQRPKLLRPNGKIYQAINVDTLRAQNIETWPFY 172

Query: 170 NQATANLVPLNSKRVAVKFDYFRIA 194
           NQATANLVPLNSKRVAVKFD+F+IA
Sbjct: 173 NQATANLVPLNSKRVAVKFDFFKIA 197

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|298204587|emb|CBI23862.3| unnamed protein product [Vitis vinifera]

 Score =  236 bits (602), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 121/169 (71%), Positives = 134/169 (79%), Gaps = 2/169 (1%)

Query: 28  KPNIIIRTHLLFCPRNQKPLNSSVSDKRRNRVSFFSGFSTKR--VESFKEELFQAIKPLD 85
           KP  I+ T   +     K L  S   K R  VSFF  F TK    E+ KEELF AI PLD
Sbjct: 104 KPKPILTTTQTYHYHPHKALEFSGYWKWRTGVSFFPSFLTKSKDSEALKEELFTAIAPLD 163

Query: 86  RGAEASPEDQARVDQIARKLEAVNDIKEPLKSNLLNGKWELLYTTSQSLLQTKRPKFLRP 145
           RGAEA+ +DQ  VDQIARKLEAVN IKEPLKS+LLNGKWELLYTTSQS+LQT+RPKFLRP
Sbjct: 164 RGAEATAQDQELVDQIARKLEAVNKIKEPLKSDLLNGKWELLYTTSQSVLQTQRPKFLRP 223

Query: 146 NGKIYQAINIDTLRAQNIETWPFFNQATANLVPLNSKRVAVKFDYFRIA 194
           NGKIYQAIN+DTLRAQN+ETWPFFNQ TANLVPLN++RVAVKFD+FRIA
Sbjct: 224 NGKIYQAINVDTLRAQNMETWPFFNQVTANLVPLNARRVAVKFDFFRIA 272

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225448063|ref|XP_002273405.1| PREDICTED: probable plastid-lipid-associated protein 4, chloroplastic [Vitis vinifera]

 Score =  236 bits (602), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 121/169 (71%), Positives = 134/169 (79%), Gaps = 2/169 (1%)

Query: 28  KPNIIIRTHLLFCPRNQKPLNSSVSDKRRNRVSFFSGFSTKR--VESFKEELFQAIKPLD 85
           KP  I+ T   +     K L  S   K R  VSFF  F TK    E+ KEELF AI PLD
Sbjct: 40  KPKPILTTTQTYHYHPHKALEFSGYWKWRTGVSFFPSFLTKSKDSEALKEELFTAIAPLD 99

Query: 86  RGAEASPEDQARVDQIARKLEAVNDIKEPLKSNLLNGKWELLYTTSQSLLQTKRPKFLRP 145
           RGAEA+ +DQ  VDQIARKLEAVN IKEPLKS+LLNGKWELLYTTSQS+LQT+RPKFLRP
Sbjct: 100 RGAEATAQDQELVDQIARKLEAVNKIKEPLKSDLLNGKWELLYTTSQSVLQTQRPKFLRP 159

Query: 146 NGKIYQAINIDTLRAQNIETWPFFNQATANLVPLNSKRVAVKFDYFRIA 194
           NGKIYQAIN+DTLRAQN+ETWPFFNQ TANLVPLN++RVAVKFD+FRIA
Sbjct: 160 NGKIYQAINVDTLRAQNMETWPFFNQVTANLVPLNARRVAVKFDFFRIA 208

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357445617|ref|XP_003593086.1| hypothetical protein MTR_2g007640 [Medicago truncatula] gi|124360438|gb|ABN08448.1| PAP fibrillin [Medicago truncatula] gi|355482134|gb|AES63337.1| hypothetical protein MTR_2g007640 [Medicago truncatula]

 Score =  234 bits (598), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 123/199 (61%), Positives = 148/199 (74%), Gaps = 10/199 (5%)

Query: 2   AITCSSSSLICFSS--DFASSSLNLFYSKPNIIIRTHLLFCPRNQKPLNSSVSDKRRNRV 59
           A+  + +S + F    D   S  NL ++ P     T  +  P +     ++ S K RN V
Sbjct: 6   AVLSTPTSTLPFRCRIDSHPSQPNLLFAPPRPKFNTTNIILPSSV----AADSAKWRNMV 61

Query: 60  SFFSGFSTKR----VESFKEELFQAIKPLDRGAEASPEDQARVDQIARKLEAVNDIKEPL 115
           S F GF T      VES K EL++ I+PL+RGAEA+PEDQ RVD+IARKLEA+N +KEPL
Sbjct: 62  SIFQGFLTGGRGNDVESLKVELYETIEPLERGAEATPEDQQRVDKIARKLEAMNSVKEPL 121

Query: 116 KSNLLNGKWELLYTTSQSLLQTKRPKFLRPNGKIYQAINIDTLRAQNIETWPFFNQATAN 175
            S+LLNGKWELLYTTSQS+LQT+RPKFLRPNGKIYQAIN DTLRAQNIETWPF+NQATAN
Sbjct: 122 NSDLLNGKWELLYTTSQSILQTQRPKFLRPNGKIYQAINTDTLRAQNIETWPFYNQATAN 181

Query: 176 LVPLNSKRVAVKFDYFRIA 194
           LVPLNS+RVAVKFD+F+IA
Sbjct: 182 LVPLNSRRVAVKFDFFKIA 200

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217073420|gb|ACJ85069.1| unknown [Medicago truncatula] gi|388518147|gb|AFK47135.1| unknown [Medicago truncatula]

 Score =  233 bits (594), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 122/199 (61%), Positives = 148/199 (74%), Gaps = 10/199 (5%)

Query: 2   AITCSSSSLICFSS--DFASSSLNLFYSKPNIIIRTHLLFCPRNQKPLNSSVSDKRRNRV 59
           A+  + +S + F    D   S  NL ++ P     T  +  P +     ++ S K RN V
Sbjct: 6   AVLSTPTSTLPFRCRIDSHPSQPNLLFAPPRPKFNTTNIILPSSV----AADSAKWRNMV 61

Query: 60  SFFSGFSTKR----VESFKEELFQAIKPLDRGAEASPEDQARVDQIARKLEAVNDIKEPL 115
           S F GF T      VES K EL++ I+PL+RGAEA+PEDQ RVD+IARKLEA+N +KEPL
Sbjct: 62  SIFQGFLTGGRGNDVESLKVELYETIEPLERGAEATPEDQQRVDKIARKLEAMNSVKEPL 121

Query: 116 KSNLLNGKWELLYTTSQSLLQTKRPKFLRPNGKIYQAINIDTLRAQNIETWPFFNQATAN 175
            S+LLNGKWELLYTTSQS+LQT+RPKFLRPNGKIYQAI+ DTLRAQNIETWPF+NQATAN
Sbjct: 122 NSDLLNGKWELLYTTSQSILQTQRPKFLRPNGKIYQAIDTDTLRAQNIETWPFYNQATAN 181

Query: 176 LVPLNSKRVAVKFDYFRIA 194
           LVPLNS+RVAVKFD+F+IA
Sbjct: 182 LVPLNSRRVAVKFDFFKIA 200

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224070527|ref|XP_002303164.1| predicted protein [Populus trichocarpa] gi|222840596|gb|EEE78143.1| predicted protein [Populus trichocarpa]

 Score =  226 bits (575), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 110/141 (78%), Positives = 126/141 (89%), Gaps = 2/141 (1%)

Query: 56  RNRVSFFSGFS--TKRVESFKEELFQAIKPLDRGAEASPEDQARVDQIARKLEAVNDIKE 113
           R  VSFF  FS  +K V+S K++L +AI PLDRGA A+P+DQ RVD+IA++LEAVNDIKE
Sbjct: 37  RTNVSFFQFFSAKSKDVKSLKQQLLEAIAPLDRGAVATPQDQKRVDEIAQELEAVNDIKE 96

Query: 114 PLKSNLLNGKWELLYTTSQSLLQTKRPKFLRPNGKIYQAINIDTLRAQNIETWPFFNQAT 173
           P KSNLLNGKWELLYTTSQS+L+TKRPKFLR NGKIYQAIN DTLRAQN+ETWPFFNQAT
Sbjct: 97  PFKSNLLNGKWELLYTTSQSILKTKRPKFLRSNGKIYQAINADTLRAQNMETWPFFNQAT 156

Query: 174 ANLVPLNSKRVAVKFDYFRIA 194
           ANLVPLN++RVAVKFD+FRIA
Sbjct: 157 ANLVPLNTRRVAVKFDFFRIA 177

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|89355891|gb|ABD72269.1| plastid fibrillin 3 [Coffea canephora]

 Score =  218 bits (556), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 100/125 (80%), Positives = 116/125 (92%)

Query: 70  VESFKEELFQAIKPLDRGAEASPEDQARVDQIARKLEAVNDIKEPLKSNLLNGKWELLYT 129
           +E+ K+EL +AI PLDRGAEA+ EDQ RVDQIARKLEAVN +KEPLKS+LLNGKWELLYT
Sbjct: 2   IETLKQELLEAIAPLDRGAEATAEDQERVDQIARKLEAVNKVKEPLKSSLLNGKWELLYT 61

Query: 130 TSQSLLQTKRPKFLRPNGKIYQAINIDTLRAQNIETWPFFNQATANLVPLNSKRVAVKFD 189
           TS+S+LQ +RPK LRPNGK+YQAIN+DTLRAQN+ETWPFFNQATANLVPLN++RVAVKFD
Sbjct: 62  TSKSVLQPQRPKLLRPNGKVYQAINVDTLRAQNMETWPFFNQATANLVPLNTRRVAVKFD 121

Query: 190 YFRIA 194
            F+IA
Sbjct: 122 SFKIA 126

Source: Coffea canephora

Species: Coffea canephora

Genus: Coffea

Family: Rubiaceae

Order: Gentianales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525938|ref|XP_003531578.1| PREDICTED: probable plastid-lipid-associated protein 4, chloroplastic-like isoform 2 [Glycine max]

 Score =  206 bits (524), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 101/139 (72%), Positives = 116/139 (83%), Gaps = 14/139 (10%)

Query: 59  VSFFSGFST--KRVESFKEELFQAIKPLDRGAEASPEDQARVDQIARKLEAVNDIKEPLK 116
           VSFF GF T  + V+S K +L++AI PLDRGAEA+PEDQ RVDQ            EPLK
Sbjct: 2   VSFFPGFITEGRDVQSLKVDLYEAIAPLDRGAEATPEDQQRVDQ------------EPLK 49

Query: 117 SNLLNGKWELLYTTSQSLLQTKRPKFLRPNGKIYQAINIDTLRAQNIETWPFFNQATANL 176
           S+LLNGKWEL YTTSQS+LQT+RPK LRPNGKIYQAIN+DTLRAQNIETWPF+NQATANL
Sbjct: 50  SDLLNGKWELFYTTSQSILQTQRPKLLRPNGKIYQAINVDTLRAQNIETWPFYNQATANL 109

Query: 177 VPLNSKRVAVKFDYFRIAD 195
           VPLNS+RVAVKFD+F+IA+
Sbjct: 110 VPLNSRRVAVKFDFFKIAN 128

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255575408|ref|XP_002528606.1| structural molecule, putative [Ricinus communis] gi|223531951|gb|EEF33764.1| structural molecule, putative [Ricinus communis]

 Score =  205 bits (522), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 115/206 (55%), Positives = 144/206 (69%), Gaps = 13/206 (6%)

Query: 1   MAITCSSSSLICFSSDFASSSLN------LFYSKPNIII----RTHLLFCPRNQKPLNSS 50
           MA++ SSS  I  +S F+++  N       FY     I     +T  L    +    NS+
Sbjct: 10  MALSSSSSPAILTASHFSTNPPNPKLTTTTFYFSSRFITANYSKTSFLNLNSSNNDNNST 69

Query: 51  VSDKRRNRVSFFSGFSTKRVES--FKEELFQAIKPLDRGAEASPEDQARVDQIARKLEAV 108
             DK R +VSFF  F  K+ ++   KEEL  AI  LDRGAEA+PEDQ RVD+IAR+LEAV
Sbjct: 70  FDDKWRAKVSFFPAFLRKKKDANVLKEELLDAIASLDRGAEATPEDQQRVDEIARQLEAV 129

Query: 109 NDIKEPLKSNLLNGKWELLYTTSQSLLQTKRPKFLRPNGKIYQAINIDTLRAQNIETWPF 168
           N  K+PLKS+L+NGKWEL+YTTSQS+LQT+RPKFLR     YQAIN+DTLRAQN+E+WPF
Sbjct: 130 NPTKQPLKSDLINGKWELIYTTSQSILQTQRPKFLRSKTN-YQAINVDTLRAQNMESWPF 188

Query: 169 FNQATANLVPLNSKRVAVKFDYFRIA 194
           FNQ TA+L PLN+K+VAVKFD F+IA
Sbjct: 189 FNQVTADLTPLNAKKVAVKFDTFKIA 214

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	197
TAIR|locus:2092150	242	AT3G26070 [Arabidopsis thalian	0.710	0.578	0.526	5.1e-35
TAIR|locus:2092165	234	AT3G26080 [Arabidopsis thalian	0.746	0.628	0.503	1.5e-33

TAIR|locus:2092150 AT3G26070 [Arabidopsis thaliana (taxid:3702)]

 Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
 Identities = 79/150 (52%), Positives = 102/150 (68%)

Query:    53 DKRRNRV----SFFSGFSTK--RVES---FKEELFQAIKPLDRGAEASPEDQARVDQIAR 103
             D+ R RV    SF   F T+  R E     K+EL +AI+PL+RGA ASP+DQ R+DQ+AR
Sbjct:    45 DRERLRVQAIFSFPPAFLTRNGRAEKQKQLKQELLEAIEPLERGATASPDDQLRIDQLAR 104

Query:   104 KLEAVNDIKEPLKSNLLNGKWEXXXXXXXXXXXXKRPKFLRPNGKIYQAINIDTLRAQNI 163
             K+EAVN  KEPLKS+L+NGKWE            K+P+FLR     YQ+IN+DTL+ QN+
Sbjct:   105 KVEAVNPTKEPLKSDLVNGKWELIYTTSASILQAKKPRFLRSITN-YQSINVDTLKVQNM 163

Query:   164 ETWPFFNQATANLVPLNSKRVAVKFDYFRI 193
             ETWPF+N  T ++ PLNSK+VAVK   F+I
Sbjct:   164 ETWPFYNSVTGDIKPLNSKKVAVKLQVFKI 193

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IEA;IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0010287 "plastoglobule" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

TAIR|locus:2092165 AT3G26080 [Arabidopsis thaliana (taxid:3702)]

 Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 78/155 (50%), Positives = 101/155 (65%)

Query:    45 KPLNSSVSDKRRNRV-SFFS-----GFSTKRVESFKEELFQAIKPLDRGAEASPEDQARV 98
             K L+    D+ R R+ + FS     G + KR +  K EL +AI+PL+RGA ASP+DQ  +
Sbjct:    32 KLLSIRKGDRERLRIQAVFSFPPRNGGAEKR-KQLKHELVEAIEPLERGATASPDDQLLI 90

Query:    99 DQIARKLEAVNDIKEPLKSNLLNGKWEXXXXXXXXXXXXKRPKFLRPNGKIYQAINIDTL 158
             DQ+ARK+EAVN  KEPLKS+L+NGKWE            K+P+FLR     YQ IN+DTL
Sbjct:    91 DQLARKVEAVNPTKEPLKSDLINGKWELIYTTSAAILQAKKPRFLRSLTN-YQCINMDTL 149

Query:   159 RAQNIETWPFFNQATANLVPLNSKRVAVKFDYFRI 193
             + Q +ETWPF+N  T +L PLNSK VAVK   F+I
Sbjct:   150 KVQRMETWPFYNSVTGDLTPLNSKTVAVKLQVFKI 184


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.134   0.393    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      197       165   0.00093  107 3  11 22  0.37    32
                                                     30  0.45    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  584 (62 KB)
  Total size of DFA:  139 KB (2086 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.32u 0.11s 15.43t   Elapsed:  00:00:00
  Total cpu time:  15.32u 0.11s 15.43t   Elapsed:  00:00:00
  Start:  Fri May 10 09:18:25 2013   End:  Fri May 10 09:18:25 2013

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IEA;IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	197
pfam04755	196	pfam04755, PAP_fibrillin, PAP_fibrillin	6e-24

>gnl|CDD|218245 pfam04755, PAP_fibrillin, PAP_fibrillin

 Score = 93.3 bits (232), Expect = 6e-24
 Identities = 47/128 (36%), Positives = 68/128 (53%), Gaps = 10/128 (7%)

Query: 71  ESFKEELFQAIKPLDRGAEASPEDQARVDQIARKLEAVNDIKEPLKS-NLLNGKWELLYT 129
           E  K +L  AI   +RG  AS +D+A ++    +LEA+N    P +S +LLNGKW LLYT
Sbjct: 1   ERLKRKLLDAIYGTNRGLRASSDDRAEIESAVTQLEALNPTPAPTESLDLLNGKWRLLYT 60

Query: 130 TSQ---SLLQTKRPKFLRPNGKIYQAINIDTLRAQNIETW--PFFN---QATANLVPLNS 181
           TS+    LL   R   L+  G+IYQ I+++ L   N  T+  P         A     + 
Sbjct: 61  TSKELLPLLARGRLPLLKV-GQIYQTIDVNNLTVYNSVTFSGPLAEGSFSVRAKFEIRSP 119

Query: 182 KRVAVKFD 189
           KRV ++F+
Sbjct: 120 KRVQIRFE 127

This family identifies a conserved region found in a number of plastid lipid-associated proteins (PAPs), and in a number of putative fibrillin proteins. Length = 196

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	197
PF04755	198	PAP_fibrillin: PAP_fibrillin; InterPro: IPR006843	99.96

>PF04755 PAP_fibrillin: PAP_fibrillin; InterPro: IPR006843 This family identifies a conserved domain found in a number of plastid lipid-associated proteins (PAPs) that are thought to form together with other plastoglobulins a coat on the surface of the lipoprotein particle

Probab=99.96  E-value=3.5e-29  Score=206.60  Aligned_cols=124  Identities=34%  Similarity=0.577  Sum_probs=112.1

Q ss_pred             HHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCcC-CCCCceEEEEEecccccccc---cCCCccccc
Q 029181           71 ESFKEELFQAIKPLDRGAEASPEDQARVDQIARKLEAVNDIKEPLKS-NLLNGKWELLYTTSQSLLQT---KRPKFLRPN  146 (197)
Q Consensus        71 ~~lK~~LL~ai~~t~RG~~as~~~r~~I~elI~~LEa~NPt~~P~~s-~lL~G~W~L~YTS~~~~l~~---~~p~~l~~v  146 (197)
                      +++|++||+++++++||+.+++++|++|+++|++||++||++.|+++ ++|+|+|+|+|||+.++.+.   +++++ ..+
T Consensus         1 ~~~K~~Ll~~~~~~~rG~~~~~~~~~~i~~~v~~LE~~np~~~p~~s~~~L~G~W~Lvytt~~~~~~~l~~~~~~~-~~~   79 (198)
T PF04755_consen    1 QDLKQELLQAVAGTNRGLRASPEDREEIEELVEELEALNPTPDPADSLPLLDGRWELVYTTSPEIRSLLQRGRLPG-VRV   79 (198)
T ss_pred             ChHHHHHHHHHhccCCCccCCHHHHHHHHHHHHHHHHhCCCCCCcCCchhcCcEEEEEeecCCCcccccccccccc-ccc
Confidence            47999999999999999999999999999999999999999999998 99999999999999998854   34444 469


Q ss_pred             cceEEEEeCCCCeEEEEEeC---CCc---ceEEeEEEEcCCceEEEEEeEEEEee
Q 029181          147 GKIYQAINIDTLRAQNIETW---PFF---NQATANLVPLNSKRVAVKFDYFRIAD  195 (197)
Q Consensus       147 G~i~Q~Id~~~~~v~N~v~f---p~~---~~v~A~~ev~s~kRv~V~Fe~~~i~g  195 (197)
                      |+|||+||.+++++.|+|.|   |++   ..+.|++++.+++|+.|+|+++.+..
T Consensus        80 ~~v~Q~id~~~~~~~N~v~~~~~~~~~~~~~v~a~~~~~~~~rv~v~f~~~~l~~  134 (198)
T PF04755_consen   80 GRVFQTIDADNGRVENVVELSGFPLLEGSVSVRASLEVRSPRRVEVTFERASLKP  134 (198)
T ss_pred             cceEEEEECCCceEEEEEEEeccCceEEEEEEEEEEEEccccEEEEEEEeeEEcc
Confidence            99999999999999999994   533   48899999999999999999998753

The coat may contain receptors for attachment to the thylakoid membrane as well as regulatory proteins that may function in the transfer of lipids to and from the thylakoid membranes.). This entry also represents a number of putative fibrillin proteins.; GO: 0005198 structural molecule activity, 0009507 chloroplast

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00