Citrus Sinensis ID: 029184

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------
Protein Sequence
MGVLGEGKGSTLVHILVVILSLVAFGFSIAAERRRSTGHMMPVPDQSNATYCVYSSDVATGYGVGAFLFLLSSESLLMGVTKCMCFGRPLAPGGNRAWTIIYFMSSWAAFLVAEACLIAGATKNAYHTKYRSMIYAQNITCETLRKGVFIAAAVFVVATMILNVYYYMYFTKATAAQGARKANRASSTVSMTGAGYA
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccEEHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEcccccccccEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEcccccccc
Coil and Loop (DISEMBL)
mgvlgegkgsTLVHILVVILSLVAFGFSIAAErrrstghmmpvpdqsnatycvyssdvatgyGVGAFLFLLSSESLLMGVtkcmcfgrplapggnraWTIIYFMSSWAAFLVAEACLIAGATKNAYHTKYRSMIYAQNITCETLRKGVFIAAAVFVVATMILNVYYYMYFTKATAaqgarkanrasstvsmtgagya
Flexible Loop (DISEMBL)
mgvlgegkgsTLVHILVVILSLVAFGFSIAAERRRSTGHMMPVPDQSNATYCVYSSDVATGYGVGAFLFLLSSESLLMGVTKCMCFGRPLAPGGNRAWTIIYFMSSWAAFLVAEACLIAGATKNAYHTKYRSMIYAQNITCETLRKGVFIAAAVFVVATMILNVYYYMYFTKATAaqgarkanrasstvsmtgagya
Low Complexity Region (SEG)
MGVLGEGKGSTlvhilvvilslvAFGFSIAAERRRSTGHMMPVPDQSNATYCVYSSDVATGYGVGAflfllssesllMGVTKCMCFGRPLAPGGNRAWTIIYFMSSWAAFLVAEACLIAGATKNAYHTKYRSMIYAQNITCETLRKGvfiaaavfvvaTMILNVYYYMYFTKATAAQGARKANRASSTVSMTGAGYA
Disordered region (IsUnstruct)
*********STLVHILVVILSLVAFGFSIAAE***************NATYCVYSSDVATGYGVGAFLFLLSSESLLMGVTKCMCFGRPLAPGGNRAWTIIYFMSSWAAFLVAEACLIAGATKNAYHTKYRSMIYAQNITCETLRKGVFIAAAVFVVATMILNVYYYMYFTKAT***********************
Disordered Region (DISOPRED)
************VHILVVILSLVAFGFSIAAERRRSTGHMMPVPDQSNATYCVYSSDVATGYGVGAFLFLLSSESLLMGVTKCMCFGR******NRAWTIIYFMSSWAAFLVAEACLIAGATKNAYHTKYRSMIYAQNITCETLRKGVFIAAAVFVVATMILNVYYYMYF***************************
Disordered Region (DISEMBL)
MGVLGEGKGSTLVHILVVILSLVAFGFSIAAERRRSTGHMMPVPDQSNATYCVYSSDVATGYGVGAFLFLLSSESLLMGVTKCMCFGRPLAPGGNRAWTIIYFMSSWAAFLVAEACLIAGATKNAYHTKYRSMIYAQNITCETLRKGVFIAAAVFVVATMILNVYYYMYFTKAT***********************
Disordered Region (DISPRO)
*******KGSTLVHILVVILSLVAFGFSIAAERRRSTGHMMPVPDQSNATYCVYSSDVATGYGVGAFLFLLSSESLLMGVTKCMCFGRPLAPGGNRAWTIIYFMSSWAAFLVAEACLIAGATKNAYHTKYRSMIYAQNITCETLRKGVFIAAAVFVVATMILNVYYYMYFTKATA**********************
Transmembrane Helix (TMHMM)
oooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGVLGEGKGSTLVHILVVILSLVAFGFSIAAERRRSTGHMMPVPDQSNATYCVYSSDVATGYGVGAFLFLLSSESLLMGVTKCMCFGRPLAPGGNRAWTIIYFMSSWAAFLVAEACLIAGATKNAYHTKYRSMIYAQNITCETLRKGVFIAAAVFVVATMILNVYYYMYFTKATAAQGARKANRASSTVSMTGAGYA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	197
225423985	190	PREDICTED: uncharacterized protein LOC10	0.954	0.989	0.836	3e-81
357488797	191	COSII [Medicago truncatula] gi|355516021	0.959	0.989	0.747	1e-80
217069922	191	unknown [Medicago truncatula]	0.959	0.989	0.742	3e-80
346465777	222	hypothetical protein [Amblyomma maculatu	0.949	0.842	0.776	3e-79
449445144	190	PREDICTED: uncharacterized protein LOC10	0.949	0.984	0.835	5e-79
147858431	231	hypothetical protein VITISV_002773 [Viti	0.964	0.822	0.703	2e-76
356526647	191	PREDICTED: uncharacterized protein LOC10	0.969	1.0	0.778	1e-73
357124343	190	PREDICTED: uncharacterized protein LOC10	0.949	0.984	0.712	1e-72
226493981	190	fiber protein Fb34 precursor [Zea mays]	0.934	0.968	0.721	3e-72
242093080	190	hypothetical protein SORBIDRAFT_10g01872	0.934	0.968	0.711	1e-71

>gi|225423985|ref|XP_002282642.1| PREDICTED: uncharacterized protein LOC100243921 [Vitis vinifera] gi|297737816|emb|CBI27017.3| unnamed protein product [Vitis vinifera]

 Score =  306 bits (784), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 159/190 (83%), Positives = 172/190 (90%), Gaps = 2/190 (1%)

Query: 4   LGEGKGSTLVHILVVILSLVAFGFSIAAERRRSTGHMMPVPDQSNATYCVYSSDVATGYG 63
           +GEGKGSTLVH++VV+LSLVAFGF++AAERRRS G +  V D  NATYCVY+SDVATGYG
Sbjct: 1   MGEGKGSTLVHLVVVVLSLVAFGFAVAAERRRSVGTI--VTDDRNATYCVYNSDVATGYG 58

Query: 64  VGAFLFLLSSESLLMGVTKCMCFGRPLAPGGNRAWTIIYFMSSWAAFLVAEACLIAGATK 123
           VG FLFLL+SESLLMGVTKCMCFGRPLAPGGNRAW+IIYF+SSW  FLVAEACLIAGATK
Sbjct: 59  VGGFLFLLTSESLLMGVTKCMCFGRPLAPGGNRAWSIIYFVSSWMTFLVAEACLIAGATK 118

Query: 124 NAYHTKYRSMIYAQNITCETLRKGVFIAAAVFVVATMILNVYYYMYFTKATAAQGARKAN 183
           NAYHTKYR MIYAQN +CETLRKGVFIA AVFVVATMILNVYYYMYF+KAT  Q  RKAN
Sbjct: 119 NAYHTKYRGMIYAQNFSCETLRKGVFIAGAVFVVATMILNVYYYMYFSKATDTQAVRKAN 178

Query: 184 RASSTVSMTG 193
           RASSTV MTG
Sbjct: 179 RASSTVGMTG 188

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357488797|ref|XP_003614686.1| COSII [Medicago truncatula] gi|355516021|gb|AES97644.1| COSII [Medicago truncatula] gi|388507888|gb|AFK42010.1| unknown [Medicago truncatula]

 Score =  304 bits (779), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 142/190 (74%), Positives = 163/190 (85%), Gaps = 1/190 (0%)

Query: 4   LGEGKGSTLVHILVVILSLVAFGFSIAAERRRSTGHMMPVPDQSNATYCVYSSDVATGYG 63
           + EG+GSTLVH+LV++  LVAFGF++AAERRRS G +   P  +N TYCVYSSDVATGYG
Sbjct: 1   MAEGRGSTLVHLLVIVFCLVAFGFAVAAERRRSVGTIHKTPG-TNETYCVYSSDVATGYG 59

Query: 64  VGAFLFLLSSESLLMGVTKCMCFGRPLAPGGNRAWTIIYFMSSWAAFLVAEACLIAGATK 123
           VGAFLFLLS ESLLMGVTKCMCFGRPL PGGNRAW+IIYF+SSWA FLVAE+CLIAGA K
Sbjct: 60  VGAFLFLLSGESLLMGVTKCMCFGRPLTPGGNRAWSIIYFLSSWATFLVAESCLIAGAKK 119

Query: 124 NAYHTKYRSMIYAQNITCETLRKGVFIAAAVFVVATMILNVYYYMYFTKATAAQGARKAN 183
           NAYHTKYR +IYAQN +CE+LRKG+FI  A+F+V TM+LNVYYYMYFTKAT    ++K N
Sbjct: 120 NAYHTKYRGIIYAQNFSCESLRKGIFITGAIFIVVTMVLNVYYYMYFTKATTTPLSQKTN 179

Query: 184 RASSTVSMTG 193
           R SSTV MTG
Sbjct: 180 RVSSTVGMTG 189

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217069922|gb|ACJ83321.1| unknown [Medicago truncatula]

 Score =  303 bits (775), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 141/190 (74%), Positives = 163/190 (85%), Gaps = 1/190 (0%)

Query: 4   LGEGKGSTLVHILVVILSLVAFGFSIAAERRRSTGHMMPVPDQSNATYCVYSSDVATGYG 63
           + EG+GSTLVH+LV++  LVAFGF++AAERRRS G +   P  +N TYCVYSSDVATGYG
Sbjct: 1   MAEGRGSTLVHLLVIVFCLVAFGFAVAAERRRSVGTIHKTPG-TNETYCVYSSDVATGYG 59

Query: 64  VGAFLFLLSSESLLMGVTKCMCFGRPLAPGGNRAWTIIYFMSSWAAFLVAEACLIAGATK 123
           VGAFLFLLS ESLLMGVTKCMCFGRPL PGGNRAW+II+F+SSWA FLVAE+CLIAGA K
Sbjct: 60  VGAFLFLLSGESLLMGVTKCMCFGRPLTPGGNRAWSIIHFLSSWATFLVAESCLIAGAKK 119

Query: 124 NAYHTKYRSMIYAQNITCETLRKGVFIAAAVFVVATMILNVYYYMYFTKATAAQGARKAN 183
           NAYHTKYR +IYAQN +CE+LRKG+FI  A+F+V TM+LNVYYYMYFTKAT    ++K N
Sbjct: 120 NAYHTKYRGIIYAQNFSCESLRKGIFITGAIFIVVTMVLNVYYYMYFTKATTTPLSQKTN 179

Query: 184 RASSTVSMTG 193
           R SSTV MTG
Sbjct: 180 RVSSTVGMTG 189

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|346465777|gb|AEO32733.1| hypothetical protein [Amblyomma maculatum]

 Score =  299 bits (766), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 146/188 (77%), Positives = 161/188 (85%), Gaps = 1/188 (0%)

Query: 6   EGKGSTLVHILVVILSLVAFGFSIAAERRRSTGHMMPVPDQSNATYCVYSSDVATGYGVG 65
           EG  STLVHI+V+ LSL AFGFSIAAERRRSTG ++     +N T+CVY SDV+TGYGVG
Sbjct: 34  EGHSSTLVHIVVIALSLTAFGFSIAAERRRSTGEIVHDSFNANITFCVYDSDVSTGYGVG 93

Query: 66  AFLFLLSSESLLMGVTKCMCFGRPLAPGGNRAWTIIYFMSSWAAFLVAEACLIAGATKNA 125
           AFLFL SS+S+LMGVTKCMCFGRPLAPGGNRAW+IIYF SSW  FLVA +CLIAGATKNA
Sbjct: 94  AFLFLFSSQSILMGVTKCMCFGRPLAPGGNRAWSIIYFASSWLTFLVASSCLIAGATKNA 153

Query: 126 YHTKYRSMIYAQNITCETLRKGVFIAAAVFVVATMILNVYYYMYFTKATAAQGARKANRA 185
           YHTKYR +IYAQ+ TCE+LRKGVFIA AVFVV TMILNVYYYMYF KAT  Q ARK NR+
Sbjct: 154 YHTKYRHVIYAQSWTCESLRKGVFIAGAVFVVFTMILNVYYYMYFAKAT-TQAARKTNRS 212

Query: 186 SSTVSMTG 193
           SSTV MTG
Sbjct: 213 SSTVGMTG 220

Source: Amblyomma maculatum

Species: Amblyomma maculatum

Genus: Amblyomma

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|449445144|ref|XP_004140333.1| PREDICTED: uncharacterized protein LOC101221296 [Cucumis sativus] gi|449502461|ref|XP_004161647.1| PREDICTED: uncharacterized protein LOC101226667 [Cucumis sativus]

 Score =  299 bits (765), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 157/188 (83%), Positives = 168/188 (89%), Gaps = 1/188 (0%)

Query: 6   EGKGSTLVHILVVILSLVAFGFSIAAERRRSTGHMMPVPDQSNATYCVYSSDVATGYGVG 65
           EGKGSTLVH+LVV+L LVAFGFSIAAERRRS G +     Q NATYCVY SDVATGYGVG
Sbjct: 2   EGKGSTLVHLLVVVLCLVAFGFSIAAERRRSVGTLFE-DKQRNATYCVYESDVATGYGVG 60

Query: 66  AFLFLLSSESLLMGVTKCMCFGRPLAPGGNRAWTIIYFMSSWAAFLVAEACLIAGATKNA 125
           AFLFLLS +SLLMGVTKCMCFG+PL PGGNRAWTIIYF+SS A FLVAEACLIAGATKNA
Sbjct: 61  AFLFLLSGQSLLMGVTKCMCFGKPLTPGGNRAWTIIYFLSSGATFLVAEACLIAGATKNA 120

Query: 126 YHTKYRSMIYAQNITCETLRKGVFIAAAVFVVATMILNVYYYMYFTKATAAQGARKANRA 185
           YHTKYR MIYAQN+ CETLRKGVFIA AVFVVATMILNVYYYMYFTKAT++Q + KANR+
Sbjct: 121 YHTKYRGMIYAQNLPCETLRKGVFIAGAVFVVATMILNVYYYMYFTKATSSQTSHKANRS 180

Query: 186 SSTVSMTG 193
           SSTV MTG
Sbjct: 181 SSTVGMTG 188

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147858431|emb|CAN79240.1| hypothetical protein VITISV_002773 [Vitis vinifera]

 Score =  290 bits (743), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 161/229 (70%), Positives = 173/229 (75%), Gaps = 39/229 (17%)

Query: 4   LGEGKGSTLVHILVVILSLVAFGFSIAAERRRST--------------------GH---- 39
           +GEGKGSTLVH++VV+LSLVAFGF++AAERRRS                     GH    
Sbjct: 1   MGEGKGSTLVHLVVVVLSLVAFGFAVAAERRRSVECSLAMKTIENLCESHVPGFGHASRL 60

Query: 40  -----MMP----------VPDQSNATYCVYSSDVATGYGVGAFLFLLSSESLLMGVTKCM 84
                  P          V D  NATYCVY+SDVATGYGVG FLFLL+SESLLMGVTKCM
Sbjct: 61  SVEDSTAPASSDLVQGTIVTDDRNATYCVYNSDVATGYGVGGFLFLLTSESLLMGVTKCM 120

Query: 85  CFGRPLAPGGNRAWTIIYFMSSWAAFLVAEACLIAGATKNAYHTKYRSMIYAQNITCETL 144
           CFGRPLAPGGNRAW+IIYF+SSW  FLVAEACLIAGATKNAYHTKYR MIYAQN +CETL
Sbjct: 121 CFGRPLAPGGNRAWSIIYFVSSWMTFLVAEACLIAGATKNAYHTKYRGMIYAQNFSCETL 180

Query: 145 RKGVFIAAAVFVVATMILNVYYYMYFTKATAAQGARKANRASSTVSMTG 193
           RKGVFIA AVFVVATMILNVYYYMYF+KAT  Q  RKANRASSTV MTG
Sbjct: 181 RKGVFIAGAVFVVATMILNVYYYMYFSKATDTQAVRKANRASSTVGMTG 229

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526647|ref|XP_003531928.1| PREDICTED: uncharacterized protein LOC100812808 [Glycine max]

 Score =  281 bits (718), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 151/194 (77%), Positives = 164/194 (84%), Gaps = 3/194 (1%)

Query: 4   LGEGKGSTLVHILVVILSLVAFGFSIAAERRRSTGHMMPVPDQSNATYCVYSSDVATGYG 63
           + EG+GSTLVH+LVV+L LVAFGF+IAAERRRS G M  + + +N T+C YSSDVATGYG
Sbjct: 1   MAEGRGSTLVHLLVVVLCLVAFGFAIAAERRRSVGTMHKI-EGTNETFCSYSSDVATGYG 59

Query: 64  VGAFLFLLSSESLLMGVTKCMCFGRPLAPGGNRAWTIIYFMSSWAAFLVAEACLIAGATK 123
           VGAFLFLLS ESLLMGVTKCMCFGRPL PG NRAW+IIYF+SSW  FLVAEACLIAGATK
Sbjct: 60  VGAFLFLLSGESLLMGVTKCMCFGRPLTPGVNRAWSIIYFLSSWVTFLVAEACLIAGATK 119

Query: 124 NAYHTKYRSMIYAQNITCETLRKGVFIAAAVFVVATMILNVYYYMYFTKATAAQGARKAN 183
           NAYHTKYR MIYA N +CE LRKGVFIA AVFVVATMILNVYYYMYFTKA     + KAN
Sbjct: 120 NAYHTKYRGMIYAHNFSCEALRKGVFIAGAVFVVATMILNVYYYMYFTKAMTTPVSHKAN 179

Query: 184 RASSTVSMTGAGYA 197
           R SSTV M  AGYA
Sbjct: 180 RVSSTVGM--AGYA 191

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357124343|ref|XP_003563860.1| PREDICTED: uncharacterized protein LOC100826208 [Brachypodium distachyon]

 Score =  277 bits (709), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 136/191 (71%), Positives = 161/191 (84%), Gaps = 4/191 (2%)

Query: 4   LGE-GKGSTLVHILVVILSLVAFGFSIAAERRRSTGHMMPVPDQSNATYCVYSSDVATGY 62
           +GE G+ S LVHILV+ LSL AFGF+IAAERRRSTG +  V D  N+T+CVY SD+ATGY
Sbjct: 1   MGEAGRSSWLVHILVIALSLTAFGFAIAAERRRSTGSI--VTDSFNSTFCVYDSDIATGY 58

Query: 63  GVGAFLFLLSSESLLMGVTKCMCFGRPLAPGGNRAWTIIYFMSSWAAFLVAEACLIAGAT 122
           GVGAFLFLLS +SLLMGVTKCMCFG+PLAPGG+RAW+IIYF SSW AF++AE+CLIAGAT
Sbjct: 59  GVGAFLFLLSGQSLLMGVTKCMCFGKPLAPGGSRAWSIIYFASSWIAFIIAESCLIAGAT 118

Query: 123 KNAYHTKYRSMIYAQNITCETLRKGVFIAAAVFVVATMILNVYYYMYFTKATAAQGARKA 182
           KNAYHTKYR MIYA + TC++LRKGVFI+ AVF V  MILNVY+YMY+TK+T +Q A+K 
Sbjct: 119 KNAYHTKYRHMIYAGSWTCDSLRKGVFISGAVFTVLCMILNVYFYMYYTKST-SQAAKKI 177

Query: 183 NRASSTVSMTG 193
           N  +  V MTG
Sbjct: 178 NTTTRIVGMTG 188

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226493981|ref|NP_001148769.1| fiber protein Fb34 precursor [Zea mays] gi|194704290|gb|ACF86229.1| unknown [Zea mays] gi|195622022|gb|ACG32841.1| fiber protein Fb34 [Zea mays]

 Score =  276 bits (706), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 135/187 (72%), Positives = 156/187 (83%), Gaps = 3/187 (1%)

Query: 7   GKGSTLVHILVVILSLVAFGFSIAAERRRSTGHMMPVPDQSNATYCVYSSDVATGYGVGA 66
           G  S LVHILVV L L AFGF++AAERRRSTG +  V D SNAT+CVY SD+ATGYGVGA
Sbjct: 5   GSSSILVHILVVALCLTAFGFAVAAERRRSTGSI--VTDSSNATFCVYDSDIATGYGVGA 62

Query: 67  FLFLLSSESLLMGVTKCMCFGRPLAPGGNRAWTIIYFMSSWAAFLVAEACLIAGATKNAY 126
           FLFLLS  SLLMGVT+CMCFG PLAPGG+RAW+IIYF SSW  F VAEACLIAGATKNAY
Sbjct: 63  FLFLLSGHSLLMGVTRCMCFGAPLAPGGSRAWSIIYFASSWITFAVAEACLIAGATKNAY 122

Query: 127 HTKYRSMIYAQNITCETLRKGVFIAAAVFVVATMILNVYYYMYFTKATAAQGARKANRAS 186
           HTKYR M+YA N TC+TLRKGVFIA AVFVV TMIL+VY+YMY++KAT +Q  ++ ++ +
Sbjct: 123 HTKYRDMVYAGNWTCQTLRKGVFIAGAVFVVFTMILDVYFYMYYSKAT-SQATKRISKTT 181

Query: 187 STVSMTG 193
            +V MTG
Sbjct: 182 PSVGMTG 188

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242093080|ref|XP_002437030.1| hypothetical protein SORBIDRAFT_10g018720 [Sorghum bicolor] gi|241915253|gb|EER88397.1| hypothetical protein SORBIDRAFT_10g018720 [Sorghum bicolor]

 Score =  274 bits (701), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 133/187 (71%), Positives = 156/187 (83%), Gaps = 3/187 (1%)

Query: 7   GKGSTLVHILVVILSLVAFGFSIAAERRRSTGHMMPVPDQSNATYCVYSSDVATGYGVGA 66
           G  S LVHILV+ + L AFGF+IAAERRRSTG +  V D SN T+CVY SD+ATGYGVGA
Sbjct: 5   GSSSILVHILVIAICLTAFGFAIAAERRRSTGSI--VTDSSNTTFCVYDSDIATGYGVGA 62

Query: 67  FLFLLSSESLLMGVTKCMCFGRPLAPGGNRAWTIIYFMSSWAAFLVAEACLIAGATKNAY 126
           FLFLLS  SLLMGVTKCMCFG PLAPGG+RAW+IIYF SSW  F VAEACLIAGATKNAY
Sbjct: 63  FLFLLSGHSLLMGVTKCMCFGAPLAPGGSRAWSIIYFTSSWITFAVAEACLIAGATKNAY 122

Query: 127 HTKYRSMIYAQNITCETLRKGVFIAAAVFVVATMILNVYYYMYFTKATAAQGARKANRAS 186
           HTKY+ M+YA N TC++LRKGVFIA AVFVV TMIL+VY+YMY++KAT +Q A++ ++ +
Sbjct: 123 HTKYKDMVYAGNWTCQSLRKGVFIAGAVFVVFTMILDVYFYMYYSKAT-SQAAKRISKTT 181

Query: 187 STVSMTG 193
            +V MTG
Sbjct: 182 PSVGMTG 188

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	197
TAIR|locus:2009922	188	AT1G13380 "AT1G13380" [Arabido	0.954	1.0	0.587	1.6e-54
TAIR|locus:505006522	173	AT4G27435 "AT4G27435" [Arabido	0.766	0.872	0.464	2.3e-32
TAIR|locus:505006194	180	AT1G61065 "AT1G61065" [Arabido	0.822	0.9	0.375	2.4e-28
TAIR|locus:2011556	175	AT1G52910 "AT1G52910" [Arabido	0.756	0.851	0.403	3.9e-28
TAIR|locus:2090156	175	AT3G15480 "AT3G15480" [Arabido	0.771	0.868	0.402	5e-28
TAIR|locus:2199332	201	AT1G68220 "AT1G68220" [Arabido	0.842	0.825	0.368	7.3e-27
TAIR|locus:2167200	209	AT5G17210 "AT5G17210" [Arabido	0.751	0.708	0.257	1.9e-05

TAIR|locus:2009922 AT1G13380 "AT1G13380" [Arabidopsis thaliana (taxid:3702)]

 Score = 563 (203.2 bits), Expect = 1.6e-54, P = 1.6e-54
 Identities = 114/194 (58%), Positives = 131/194 (67%)

Query:     4 LGEGKGSTXXXXXXXXXXXXAFGFSIAAERRRSTGHMMPVPDQSNATYCVYSSDVATGYG 63
             +GEGK ST            AFGFSIAAERRRS G  +  P  +N T+CVY SDVATGYG
Sbjct:     1 MGEGKASTLVFILVVALSLVAFGFSIAAERRRSIGKSIQDPI-TNTTFCVYDSDVATGYG 59

Query:    64 VGAXXXXXXXXXXXMGVTKCMCFGRPLAPGGNRAWTIIYFMSSWAAFLVAEACLIAGATK 123
             VGA           M VTKCMCFGRPLAPG +RAW+IIYF+SSW  FLVAEAC+IAGATK
Sbjct:    60 VGAFLFLLSSESLLMSVTKCMCFGRPLAPGSDRAWSIIYFISSWMTFLVAEACVIAGATK 119

Query:   124 NAYHTKYRSMIYAQNITCETLRKGXXXXXXXXXXXTMILNVYYYMYFTKATAAQGARKAN 183
             NAYHTKY S   +Q  +C +LRKG           TM+LNVYYYMYFTK+ ++  A KAN
Sbjct:   120 NAYHTKYLS---SQTFSCASLRKGIFIAGAVFIVATMVLNVYYYMYFTKSVSSPPAHKAN 176

Query:   184 RASSTVSMTGAGYA 197
             R+SS + M  AGYA
Sbjct:   177 RSSSNIGM--AGYA 188

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:505006522 AT4G27435 "AT4G27435" [Arabidopsis thaliana (taxid:3702)]

 Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
 Identities = 72/155 (46%), Positives = 95/155 (61%)

Query:    24 AFGFSIAAERRRSTGHMMPVPD-QSNATYCVYSSDVATGYGVGAXXXXXXXXXXXMGVTK 82
             AFG ++AAE+RRST  ++   + Q N  YCVY SD ATGYGVGA           M V++
Sbjct:    17 AFGLAVAAEQRRSTARVVQDTEVQYN--YCVYDSDRATGYGVGAFLFSVASQILIMLVSR 74

Query:    83 CMCFGRPLAPGGNRAWTIIYFMSSWAAFLVAEACLIAGATKNAYHTKYRSMIYAQNITCE 142
             C C G+PL PGG+RA  +I F+ SW  FL+AE CL+AG+ +NAYHTKYR+M       C+
Sbjct:    75 CFCCGKPLKPGGSRALALILFIVSWMFFLIAEICLLAGSVENAYHTKYRTMFMDNPPDCQ 134

Query:   143 TLRKGXXXXXXXXXXXTMILN-VYYYMYFTKATAA 176
             TLRKG             I++  YY+ YF+ A A+
Sbjct:   135 TLRKGVFAAGASFVFFNAIVSQFYYFFYFSAAEAS 169

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:505006194 AT1G61065 "AT1G61065" [Arabidopsis thaliana (taxid:3702)]

 Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
 Identities = 62/165 (37%), Positives = 94/165 (56%)

Query:    24 AFGFSIAAERRRSTGHMMPVPDQSNATYCVYSSDVATGYGVGAXXXXXXXXXXXMGVTKC 83
             AFG ++AAE+RR+T  +    +  + +YCVY  D+ATG GVG+           M  ++C
Sbjct:    17 AFGLAVAAEQRRTTWQISR--ESRDLSYCVYDKDIATGLGVGSFLVLLASQLLIMVASRC 74

Query:    84 MCFGRPLAPGGNRAWTIIYFMSSWAAFLVAEACLIAGATKNAYHTKYRSMIYAQNITCET 143
             +C GR L P G+R+W I  F+++W  F +A+ CL+AG+ +NAYHTKYR      + +C +
Sbjct:    75 LCCGRALTPSGSRSWAIFLFITTWVFFFIAQVCLLAGSVRNAYHTKYRVYFGNTSPSCRS 134

Query:   144 LRKGXXXXXXXXXXXTMILNVYYYMYFTKATAAQGARKAN-RASS 187
             LRKG           T I++  YY+  ++A   Q +R    R SS
Sbjct:   135 LRKGVFGAGAAFIVLTGIVSELYYVTLSRAKDFQPSRDPGIRMSS 179

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2011556 AT1G52910 "AT1G52910" [Arabidopsis thaliana (taxid:3702)]

 Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
 Identities = 61/151 (40%), Positives = 88/151 (58%)

Query:    24 AFGFSIAAERRRSTGHMMPVPDQSNATYCVYSSDVATGYGVGAXXXXXXXXXXXMGVTKC 83
             A G +IAAE+RRS G ++P   +    +C Y SD+AT YG GA           M  ++C
Sbjct:    17 AVGLAIAAEQRRSVGKVVP-DGEKEFEHCEYGSDIATSYGAGAFVLLFISQVIIMVASRC 75

Query:    84 MCFGRPLAPGGNRAWTIIYFMSSWAAFLVAEACLIAGATKNAYHTKYRSMIYAQNI-TCE 142
              C G+ L PGG+RA  I+ F+  W  FL+AE CL+AG+ +NAYHT YR M   +N  +CE
Sbjct:    76 FCCGKALKPGGSRACGIMLFLICWVFFLIAEVCLLAGSIRNAYHTTYRRMWNIENPPSCE 135

Query:   143 TLRKGXXXXXXXXXXXTMILNVYYYMYFTKA 173
              +RKG           T I++ +YY+ +++A
Sbjct:   136 VIRKGVFAAGASFALFTAIVSQFYYISYSRA 166

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2090156 AT3G15480 "AT3G15480" [Arabidopsis thaliana (taxid:3702)]

 Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
 Identities = 62/154 (40%), Positives = 89/154 (57%)

Query:    24 AFGFSIAAERRRSTGHMMPVPDQSNATYCVYSSDVATGYGVGAXXXXXXXXXXXMGVTKC 83
             A G +IAAE+RRS G +    D+    YCVY +D+AT YG GA           M  ++C
Sbjct:    17 AVGLAIAAEQRRSVGKVETDRDKQY-DYCVYGTDIATSYGAGAFVLLFVSQVLIMAASRC 75

Query:    84 MCFGRPLAPGGNRAWTIIYFMSSWAAFLVAEACLIAGATKNAYHTKYRSMIYAQNI-TCE 142
              C G+ L PGG+RA  II F+  W  FL+AE CL+A + +NAYHT+YR M   ++  +CE
Sbjct:    76 FCCGKSLNPGGSRACAIILFLICWVFFLIAEMCLLAASIRNAYHTQYRKMWKVEDPPSCE 135

Query:   143 TLRKGXXXXXXXXXXXTMILNVYYYMYFTKATAA 176
              +RKG           T I++ +YY+ +++A  A
Sbjct:   136 VIRKGVFAAGAAFTLFTAIVSQFYYVCYSRARDA 169

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2199332 AT1G68220 "AT1G68220" [Arabidopsis thaliana (taxid:3702)]

 Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
 Identities = 63/171 (36%), Positives = 89/171 (52%)

Query:    24 AFGFSIAAERRRSTGHMMPVPDQ-SNATYCVYSSDVATGYGVGAXXXXXXXXXXXMGVTK 82
             AF F+  AERRRST   +PVPDQ    T C Y ++ +T YG+ A            GVTK
Sbjct:    18 AFVFAFGAERRRSTA--VPVPDQYDEKTICKYGTEASTVYGMSAFGLLLVSQAVVNGVTK 75

Query:    83 CMCFGRPLAPGGN-RAWTIIYFMSSWAAFLVAEACLIAGATKNAYHTKYRSMIYAQNITC 141
             C+CFG+ L  G +   W I++F+ SW +FL AEACL+ G+ +NAYHTK   +   + ++C
Sbjct:    76 CLCFGKGLVTGTSYTVWAIVFFVVSWVSFLGAEACLLGGSARNAYHTKSEGIYKGKELSC 135

Query:   142 ETLRKGXXXXXXXXXXXTMILNVYYYMYFTKATAAQGARKANRASSTVSMT 192
               L  G           ++I  + YY+  +KA    G  K       + MT
Sbjct:   136 AVLPVGVFAAGAAFTLMSLIATILYYLAHSKADTG-GWEKHQNDGINIGMT 185

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2167200 AT5G17210 "AT5G17210" [Arabidopsis thaliana (taxid:3702)]

 Score = 112 (44.5 bits), Expect = 1.9e-05, P = 1.9e-05
 Identities = 41/159 (25%), Positives = 59/159 (37%)

Query:    28 SIAAERRRSTGHMMPVPDQSNATYCVYSSDVATGYGVGAXXXXXXXXXXXMGVTKCMCFG 87
             +  AE  R     + V    + T C Y    A   G  +              + C C  
Sbjct:    23 AFVAEATRIKRSQVTVTVSDSITKCTYPRSPAFNLGFTSALFLMMAQIIVSVSSGCFCCR 82

Query:    88 RPLAPGGNRAWTI--IYFMSSWAAFLVAEACLIAGATKNAYHTKYRSMIYAQNITCETLR 145
             +  AP  +  W I  I F+ SW  F++A   L++GA  N  HT+  SM  A    C  ++
Sbjct:    83 KGPAPSRSN-WIISLICFVVSWFTFVIAFLVLLSGAALNDEHTE-ESM-NAGTYFCYIVK 139

Query:   146 KGXXXXXXXXXXXTMILNVYYYMYFTK------ATAAQG 178
              G           T+ L + YY+  T       AT  QG
Sbjct:   140 PGVFSTGAVLSLVTIALGIVYYLCLTSNKQIVAATTTQG 178


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.131   0.402    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      197       163   0.00084  107 3  11 22  0.47    31
                                                     30  0.44    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  595 (63 KB)
  Total size of DFA:  151 KB (2091 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.23u 0.14s 11.37t   Elapsed:  00:00:01
  Total cpu time:  11.23u 0.14s 11.37t   Elapsed:  00:00:01
  Start:  Fri May 10 09:21:03 2013   End:  Fri May 10 09:21:04 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	197
pfam06749	97	pfam06749, DUF1218, Protein of unknown function (D	3e-23

>gnl|CDD|219160 pfam06749, DUF1218, Protein of unknown function (DUF1218)

 Score = 88.5 bits (220), Expect = 3e-23
 Identities = 40/100 (40%), Positives = 57/100 (57%), Gaps = 5/100 (5%)

Query: 65  GAFLFLLSSESLLMGVTKCMCFGRPLAP--GGNRAWTIIYFMSSWAAFLVAEACLIAGAT 122
            A +FL  ++ +   V  C C G+ L P  G  RA  ++ F+ SW AF++A A L+AGA 
Sbjct: 1   AAAVFLAVAQVVGNVVGGCCCCGKALPPKSGRKRALAVVCFVLSWIAFVIAFALLLAGAA 60

Query: 123 KNAYHTKYRSMIYAQNITCETLRKGVFIAAAVFVVATMIL 162
           +NAYHT+Y         +C TL+KGVF A AV  +   +L
Sbjct: 61  RNAYHTRYNVHF---RPSCYTLKKGVFAAGAVLSLLAALL 97

This family contains hypothetical plant proteins of unknown function. Family members contain a number of conserved cysteine residues. Length = 97

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	197
PF06749	97	DUF1218: Protein of unknown function (DUF1218); In	99.97
PF05478	806	Prominin: Prominin; InterPro: IPR008795 The promin	89.64
PF07344	155	Amastin: Amastin surface glycoprotein; InterPro: I	87.82
PF05360	53	YiaAB: yiaA/B two helix domain; InterPro: IPR00802	83.41
cd07912	418	Tweety_N N-terminal domain of the protein encoded	80.23

>PF06749 DUF1218: Protein of unknown function (DUF1218); InterPro: IPR009606 This family contains hypothetical plant proteins of unknown function

Probab=99.97  E-value=1.7e-30  Score=195.79  Aligned_cols=95  Identities=38%  Similarity=0.720  Sum_probs=89.0

Q ss_pred             HHHHHHHHHHHHHHHHhcccccCCCCCC--CCChHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccc
Q 029184           65 GAFLFLLSSESLLMGVTKCMCFGRPLAP--GGNRAWTIIYFMSSWAAFLVAEACLIAGATKNAYHTKYRSMIYAQNITCE  142 (197)
Q Consensus        65 ~A~v~Ll~aqvi~~~a~~C~Cc~~~~~~--~~~r~~ai~~~v~SWi~f~iA~~lLl~Ga~~N~~~~~~~~~~~~~~~~C~  142 (197)
                      +|++||+++|+++|+++||+||+++.+|  +++|+++++||++||++|+|||++|++|+++|++|+|++.++   +++|+
T Consensus         1 ~A~~~L~~aqvi~~~~~gC~cc~~~~~~~~~~~r~~a~~~~v~SWi~f~ia~~~ll~ga~~n~~~~~~~~~~---~~~C~   77 (97)
T PF06749_consen    1 AAAVFLLAAQVIANVAGGCLCCGKRVSPKSSRNRTLAVVFFVLSWIVFIIAEALLLAGASMNARHTKGNGWF---NPSCY   77 (97)
T ss_pred             CHHHHHHHHHHHHHHHhcceEeCCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHhcccccccccccc---CCccc
Confidence            4899999999999999999999988766  479999999999999999999999999999999999998875   77999


Q ss_pred             cccccchhhhHHHHHHHHHH
Q 029184          143 TLRKGVFIAAAVFVVATMIL  162 (197)
Q Consensus       143 ~vk~GvFa~aAvl~l~t~~~  162 (197)
                      ++|+|+|++||+|+|+|++|
T Consensus        78 ~~k~GvF~~~a~l~l~t~~f   97 (97)
T PF06749_consen   78 TVKKGVFAGGAVLSLVTALF   97 (97)
T ss_pred             ccCCceeeHhHHHHHHHHhC
Confidence            99999999999999999875

Family members contain a number of conserved cysteine residues.

>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology

Probab=89.64  E-value=1.1  Score=44.97  Aligned_cols=73  Identities=25%  Similarity=0.364  Sum_probs=44.5

Q ss_pred             eeecCCCchh-hhHHHHHHHHHHHHHHHHHHhcccccC-CC-CCCC--------CChHH---HHHHHHHHHHHHHHHHHH
Q 029184           51 YCVYSSDVAT-GYGVGAFLFLLSSESLLMGVTKCMCFG-RP-LAPG--------GNRAW---TIIYFMSSWAAFLVAEAC  116 (197)
Q Consensus        51 ~C~Yps~~A~-~lGi~A~v~Ll~aqvi~~~a~~C~Cc~-~~-~~~~--------~~r~~---ai~~~v~SWi~f~iA~~l  116 (197)
                      .-+|.++.-. +++++..++|++  ++.....-|+||| ++ ..|+        +.+-+   ..+.|++||+..+++.+.
T Consensus       406 ~~~y~~yR~~~~lil~~~llLIv--~~~~lGLl~G~~G~~~~~~p~~r~c~~~tGg~~Lm~gv~~~Flf~~~l~l~~~~~  483 (806)
T PF05478_consen  406 YEKYDSYRWIVGLILCCVLLLIV--LCLLLGLLCGCCGYRRRADPTDRGCSSNTGGNFLMAGVGLSFLFSWFLMLLVLFY  483 (806)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhccCCCCCCCcccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555433 445555555544  3333445577898 43 2232        12222   367789999999999999


Q ss_pred             HHHHhhhcc
Q 029184          117 LIAGATKNA  125 (197)
Q Consensus       117 Ll~Ga~~N~  125 (197)
                      |+.|.....
T Consensus       484 Fl~G~~~~~  492 (806)
T PF05478_consen  484 FLVGGNTYT  492 (806)
T ss_pred             HHHHhhhhe
Confidence            999998743

Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane

>PF07344 Amastin: Amastin surface glycoprotein; InterPro: IPR009944 This family contains the eukaryotic surface glycoprotein amastin (approximately 180 residues long)

Probab=87.82  E-value=3.3  Score=33.34  Aligned_cols=91  Identities=15%  Similarity=0.124  Sum_probs=59.1

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHhhhcccceeccCCCCCCCceeecCCCchhhhHHHHHHHHHHHHHHHHHHhcccccCC
Q 029184            9 GSTLVHILVVILSLVAFGFSIAAERRRSTGHMMPVPDQSNATYCVYSSDVATGYGVGAFLFLLSSESLLMGVTKCMCFGR   88 (197)
Q Consensus         9 ~~~~v~~~v~~lgliAfiLgi~AE~~r~~~~~~~~~~~~~~~~C~Yps~~A~~lGi~A~v~Ll~aqvi~~~a~~C~Cc~~   88 (197)
                      +.-...++..+++..|+++|+..=...                 ...+-+...|.+.+++++++.=++....=.=.-|+ 
T Consensus        64 aa~afaIisi~~~~~a~v~g~~~l~~~-----------------~~~r~v~l~L~~~~~~~~~v~wa~~v~~Y~~~~C~-  125 (155)
T PF07344_consen   64 AAQAFAIISIFVYGAAFVLGVLLLCCC-----------------SCLRWVCLVLNIVGIVTLLVVWALMVVVYYGGFCG-  125 (155)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh-----------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCc-
Confidence            345667888899999999998864332                 23334567788888888877654433322223444 


Q ss_pred             CCCCCC-ChHHHHHHHHHHHHHHHHHHHHH
Q 029184           89 PLAPGG-NRAWTIIYFMSSWAAFLVAEACL  117 (197)
Q Consensus        89 ~~~~~~-~r~~ai~~~v~SWi~f~iA~~lL  117 (197)
                      +.++.. +=..+-.+++++|+..+++.+.|
T Consensus       126 ~~~~~~~~yg~GF~L~v~aw~l~~i~ii~L  155 (155)
T PF07344_consen  126 ALKSRGYKYGAGFALFVAAWCLDIINIIFL  155 (155)
T ss_pred             CccCCCcccCccHHHHHHHHHHHHHHHHhC
Confidence            333322 22347889999999999987754

In Trypanosoma cruzi, amastin is particularly abundant during the amastigote stage.

>PF05360 YiaAB: yiaA/B two helix domain; InterPro: IPR008024 This domain consists of two transmembrane helices and a conserved linking section

Probab=83.41  E-value=1.9  Score=29.00  Aligned_cols=44  Identities=20%  Similarity=0.333  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccccchhhhHHHHHHHHH
Q 029184          103 FMSSWAAFLVAEACLIAGATKNAYHTKYRSMIYAQNITCETLRKGVFIAAAVFVVATMI  161 (197)
Q Consensus       103 ~v~SWi~f~iA~~lLl~Ga~~N~~~~~~~~~~~~~~~~C~~vk~GvFa~aAvl~l~t~~  161 (197)
                      ...+|+.|+++..++..|.- |....-              -.||.++.+-.+++.++.
T Consensus         2 ~~~~~~~f~i~~~~~~iGl~-~~~~~l--------------~~KGy~~~~~l~~l~s~~   45 (53)
T PF05360_consen    2 VGQSWISFGISIVLMLIGLW-NAPLDL--------------SEKGYYAMGLLFLLFSAF   45 (53)
T ss_pred             hhHHHHHHHHHHHHHHHHHH-hCCCCH--------------HHHHHHHHHHHHHHHHHH
Confidence            46899999999999999986 554332              257888888887776643

>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels

Probab=80.23  E-value=8.7  Score=36.16  Aligned_cols=30  Identities=17%  Similarity=0.025  Sum_probs=17.4

Q ss_pred             hhhh-HHHHHHHHHHHHHHHHHHhcccccCC
Q 029184           59 ATGY-GVGAFLFLLSSESLLMGVTKCMCFGR   88 (197)
Q Consensus        59 A~~l-Gi~A~v~Ll~aqvi~~~a~~C~Cc~~   88 (197)
                      |+++ |..|++.+++.-+...+...|.||.+
T Consensus        38 Sv~~~a~iaavwlil~ll~ll~~~~~~CCcr   68 (418)
T cd07912          38 SLLILASIPAACLILSLLFLLVYLITRCCDR   68 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence            5554 55566666666566665566665543

The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00