Citrus Sinensis ID: 029186

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------
Protein Sequence
MDIVKQKWKKNLILKTWERCKSLGSSSSSGSGSGSSSNNKKPSCVMMMIKSKSWSSSPERNNNYNNKGCQVAPEGCFSVYVGPQRQRFVIKTEFANHPLFKILLEDAESEYGYENQGPIMLPCDVDLFFKVLAELESTGDEDDDHDIANKGCCSPLVLCSSPARRPNHRISSKDYGAGAGGAYRLLSPSRLLKMNGF
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccEEEEEEccccEEEEEEccccccHHHHHHHHHHHHHHcccccccEEEcccHHHHHHHHHHHHcccccccccHHHccccccccccccccccccccccccccccccccccEEEcccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccEEEEEEcccccEEEEEHHHcccHHHHHHHHHHHHHHcccccccEEccccHHHHHHHHHHHHccccccccHHccccccccccccccccccccccccccccHHHHccccEEcccccHHHEHccc
Coil and Loop (DISEMBL)
MDIVKQKWKKNLILKTWERCkslgsssssgsgsgsssnnkkpscVMMMIkskswssspernnnynnkgcqvapegcfsvyvgpqrqrfvIKTEFANHPLFKILLEDaeseygyenqgpimlpcdVDLFFKVLAELestgdedddhdiankgccsplvlcssparrpnhrisskdygagaggayrllspsrllkmngf
Flexible Loop (DISEMBL)
mdivkqkwkknlILKTWERCKslgsssssgsgsgsssnnkkpscVMMMIKSKSWSSSPERNNNYNNKGCQVAPEGCFSVYVGPQRQRFVIKTEFANHPLFKILLEDAESEYGYENQGPIMLPCDVDLFFKVLAELESTGDEDDDHDIANKGCCSPLVLCSSPARRPNHrisskdygagaggayrllspsrllkmngf
Low Complexity Region (SEG)
MDIVKQKWKKNLILKTWERCKslgsssssgsgsgsssNNKKPSCVMMMIkskswsssPERNNNYNNKGCQVAPEGCFSVYVGPQRQRFVIKTEFANHPLFKILLEDAESEYGYENQGPIMLPCDVDLFFKVLAELESTGDEDDDHDIANKGCCSPLVLCSSPARRPNHRISSKDYgagaggaYRLLSPSRLLKMNGF
Disordered region (IsUnstruct)
******************************************************************KGCQVAPEGCFSVYVGPQRQRFVIKTEFANHPLFKILLEDAESEYGYENQGPIMLPCDVDLFFKVLAELE*********DIANKGCCSPLVLC**************************************
Disordered Region (DISOPRED)
*****QK*KKNLILKTW*********************************************************GCFSVYVGPQRQRFVIKTEFANHPLFKILLEDAESEYGYENQGPIMLPCDVDLFFKVLA*****************GCC*********************************SPSRLLKMN**
Disordered Region (DISEMBL)
MDIVKQKWKKNLILKTWERCK*******************KPSCVMMMIKSK********NNNYNNKGCQVAPEGCFSVYVGPQRQRFVIKTEFANHPLFKILLEDAESEYGYENQGPIMLPCDVDLFFKVLAELESTGDEDDDHDIANKGCCSPLVLCSSPARRPNHRISSKDYGAGAGGAYRLLSPSRLLKMNGF
Disordered Region (DISPRO)
MDIVKQKWKKNLILKTWERCKSL**********************************************QVAPEGCFSVYVGPQRQRFVIKTEFANHPLFKILLEDAESEYGYENQGPIMLPCDVDLFFKVLAELEST**EDDDHDIANKGCCSPLVLCSSPARRPNHRISSKDYGAGAGGAYRLLSPSRLLKMNGF
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDIVKQKWKKNLILKTWERCKSLGSSSSSGSGSGSSSNNKKPSCVMMMIKSKSWSSSPERNNNYNNKGCQVAPEGCFSVYVGPQRQRFVIKTEFANHPLFKILLEDAESEYGYENQGPIMLPCDVDLFFKVLAELESTGDEDDDHDIANKGCCSPLVLCSSPARRPNHRISSKDYGAGAGGAYRLLSPSRLLKMNGF
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	197	2.2.26 [Sep-21-2011]
P32295	92	Indole-3-acetic acid-indu	N/A	no	0.289	0.619	0.482	2e-08
P33081	82	Auxin-induced protein 15A	no	no	0.289	0.695	0.448	2e-07
P33080	92	Auxin-induced protein X10	no	no	0.370	0.793	0.386	3e-07
P33082	82	Auxin-induced protein X15	no	no	0.304	0.731	0.409	3e-07
P33079	93	Auxin-induced protein 10A	no	no	0.324	0.688	0.4	2e-06
P33083	90	Auxin-induced protein 6B	no	no	0.375	0.822	0.370	3e-06

>sp|P32295|ARG7_VIGRR Indole-3-acetic acid-induced protein ARG7 OS=Vigna radiata var. radiata GN=ARG7 PE=2 SV=1

 Score = 58.9 bits (141), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 37/58 (63%), Gaps = 1/58 (1%)

Query: 72  APEGCFSVYVGPQRQRFVIKTEFANHPLFKILLEDAESEYGYEN-QGPIMLPCDVDLF 128
           AP+G  +VYVG   +RFVI     N PLF+ LL  AE E+GY++  G + +PC  DLF
Sbjct: 25  APKGYLAVYVGENMKRFVIPVSHLNQPLFQDLLSQAEEEFGYDHPMGGLTIPCSEDLF 82

Vigna radiata var. radiata (taxid: 3916)

>sp|P33081|AX15A_SOYBN Auxin-induced protein 15A OS=Glycine max PE=2 SV=1

 Score = 55.8 bits (133), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 1/58 (1%)

Query: 72  APEGCFSVYVGPQRQRFVIKTEFANHPLFKILLEDAESEYGYEN-QGPIMLPCDVDLF 128
           AP+G  +VYVG + +RFVI   + N P F+ LL  AE E+GY++  G + +PC  D+F
Sbjct: 17  APKGYLAVYVGEKLKRFVIPVSYLNQPSFQDLLSQAEEEFGYDHPMGGLTIPCSEDVF 74

Glycine max (taxid: 3847)

>sp|P33080|AX10A_SOYBN Auxin-induced protein X10A OS=Glycine max PE=2 SV=1

 Score = 55.1 bits (131), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 2/75 (2%)

Query: 62  NNYNNKGCQVAPEGCFSVYVGPQRQRFVIKTEFANHPLFKILLEDAESEYGYEN-QGPIM 120
           N  ++K  +V P+G   VYVG + +RF+I   + N P F+ LL  AE E+GY++  G + 
Sbjct: 16  NQASSKSVEV-PKGYLVVYVGDKMRRFLIPVSYLNQPSFQDLLNQAEEEFGYDHPMGGLT 74

Query: 121 LPCDVDLFFKVLAEL 135
           +PC  D F  V + L
Sbjct: 75  IPCKEDEFLTVTSHL 89

Glycine max (taxid: 3847)

>sp|P33082|AXX15_SOYBN Auxin-induced protein X15 OS=Glycine max PE=2 SV=1

 Score = 55.1 bits (131), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 40/61 (65%), Gaps = 1/61 (1%)

Query: 72  APEGCFSVYVGPQRQRFVIKTEFANHPLFKILLEDAESEYGYEN-QGPIMLPCDVDLFFK 130
           AP+G  +VYVG + +RFVI   + N P F+ LL  AE E+GY++  G + +PC  ++F +
Sbjct: 17  APKGYLAVYVGEKMKRFVIPVSYMNQPSFQDLLTQAEEEFGYDHPMGGLTIPCSEEVFQR 76

Query: 131 V 131
           +
Sbjct: 77  I 77

Glycine max (taxid: 3847)

>sp|P33079|A10A5_SOYBN Auxin-induced protein 10A5 OS=Glycine max PE=2 SV=1

 Score = 52.4 bits (124), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 1/65 (1%)

Query: 72  APEGCFSVYVGPQRQRFVIKTEFANHPLFKILLEDAESEYGYEN-QGPIMLPCDVDLFFK 130
            P+G  +VYVG + +RF I   + N P F+ LL  AE E+GY++  G + +PC  + F  
Sbjct: 26  VPKGYAAVYVGDKMRRFTIPVSYLNEPSFQELLSQAEEEFGYDHPMGGLTIPCKEEEFLN 85

Query: 131 VLAEL 135
           V A L
Sbjct: 86  VTAHL 90

Glycine max (taxid: 3847)

>sp|P33083|AX6B_SOYBN Auxin-induced protein 6B OS=Glycine max PE=2 SV=1

 Score = 52.0 bits (123), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 7/81 (8%)

Query: 49  IKSKSWSSSPERNNNYNNKGCQVAPEGCFSVYVGPQRQRFVIKTEFANHPLFKILLEDAE 108
           I+  S+S+     N  ++K   V  +G  +VYVG + +RFVI   + N P F+ LL  AE
Sbjct: 8   IRKASFSA-----NQASSKAVDVE-KGYLAVYVGEKMRRFVIPVSYLNKPSFQDLLSQAE 61

Query: 109 SEYGYEN-QGPIMLPCDVDLF 128
            E+GY +  G + +PC  D+F
Sbjct: 62  EEFGYHHPNGGLTIPCSEDVF 82

Glycine max (taxid: 3847)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	197
224122102	181	SAUR family protein [Populus trichocarpa	0.857	0.933	0.517	1e-40
224072526	167	SAUR family protein [Populus trichocarpa	0.837	0.988	0.462	6e-38
255540139	170	calmodulin binding protein, putative [Ri	0.837	0.970	0.481	2e-36
255547624	174	hypothetical protein RCOM_1078910 [Ricin	0.878	0.994	0.479	2e-36
356569123	172	PREDICTED: uncharacterized protein LOC10	0.761	0.872	0.470	2e-35
388521003	162	unknown [Medicago truncatula]	0.751	0.913	0.465	1e-34
315937294	182	SAUR family protein [Jatropha curcas]	0.807	0.873	0.441	4e-34
224057798	160	SAUR family protein [Populus trichocarpa	0.705	0.868	0.517	1e-33
356508835	168	PREDICTED: indole-3-acetic acid-induced	0.761	0.892	0.421	4e-32
449454953	156	PREDICTED: uncharacterized protein LOC10	0.659	0.833	0.483	1e-31

>gi|224122102|ref|XP_002318753.1| SAUR family protein [Populus trichocarpa] gi|222859426|gb|EEE96973.1| SAUR family protein [Populus trichocarpa]

 Score =  171 bits (433), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 106/205 (51%), Positives = 127/205 (61%), Gaps = 36/205 (17%)

Query: 1   MDIVKQ-KWKKNLILKTWERCKSLGSSSSSGSGSGSSSNNKKPS--CVMMMIKSKSWSSS 57
           MD VK  KWKK+L ++ W R  ++G               KKPS   V+   KSKSW  +
Sbjct: 1   MDAVKDTKWKKSLFMRAWYRSLTVG--------------RKKPSKNSVISFTKSKSWHCT 46

Query: 58  PE--------RNNNYNNKGCQVAPEGCFSVYVGPQRQRFVIKTEFANHPLFKILLEDAES 109
            +          NN + K  QVAP+GCFSVYVG ++QRF +K EFANH LFK+LLEDAE 
Sbjct: 47  RKPSDQEDGISTNNKSKKKTQVAPDGCFSVYVGAEKQRFAVKAEFANHQLFKMLLEDAEL 106

Query: 110 EYGYENQGPIMLPCDVDLFFKVLAELESTGDEDDDHDIANKGCCSPLVLCSSPARRPNHR 169
           EYG+ ++GPI LPCDVD F+KVLAE+ES  DE DD  I N   CS L LC SPARR   R
Sbjct: 107 EYGHNSEGPISLPCDVDFFYKVLAEMES--DEVDDIMI-NPPSCSSLALC-SPARRFKSR 162

Query: 170 ISSKDYGAGAGGAYRLLSPSRLLKM 194
              KD      GAYR+LSPSR+LKM
Sbjct: 163 ---KD----CHGAYRILSPSRILKM 180

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224072526|ref|XP_002303770.1| SAUR family protein [Populus trichocarpa] gi|222841202|gb|EEE78749.1| SAUR family protein [Populus trichocarpa]

 Score =  162 bits (411), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 92/199 (46%), Positives = 122/199 (61%), Gaps = 34/199 (17%)

Query: 1   MDIVKQK--WKKNLILKTWERCKSLGSSSSSGSGSGSSSNNKKPSCVMMMIKSKSWSSSP 58
           MD+ K K  +K NLI+KTWERC S G  S   S    S   K  SC  + +      S  
Sbjct: 1   MDVSKGKGKFKGNLIIKTWERCISFGRGSKRTSRLERSLTPKSKSCPHIKV------SLE 54

Query: 59  ERNNNYNNKGCQVAPEGCFSVYVGPQRQRFVIKTEFANHPLFKILLEDAESEYGYENQGP 118
           + ++  +++  +VAPEGCFSVYVGPQ+QRFVIKTE+ANHPLFKILLE+AESEYGY  +GP
Sbjct: 55  DDHDQKHSRKSRVAPEGCFSVYVGPQKQRFVIKTEYANHPLFKILLEEAESEYGYNPEGP 114

Query: 119 IMLPCDVDLFFKVLAELESTGDEDDDHDIANKGCCSPLVLCSSPARRPNHRISSKDYGAG 178
           + LPC+VD+F+KVL  +E TG ++  H    +GC                   +K+Y   
Sbjct: 115 LTLPCNVDIFYKVLMAMEDTGIDNKIH----RGCS-----------------FAKNY--- 150

Query: 179 AGGAYRLLSPSRLLKMNGF 197
             G+Y LLSPSR++ +N F
Sbjct: 151 --GSYHLLSPSRMIVLNQF 167

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255540139|ref|XP_002511134.1| calmodulin binding protein, putative [Ricinus communis] gi|223550249|gb|EEF51736.1| calmodulin binding protein, putative [Ricinus communis]

 Score =  157 bits (398), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 90/187 (48%), Positives = 113/187 (60%), Gaps = 22/187 (11%)

Query: 12  LILKTWERCKSLGSSSSSGSGSG---SSSNNKKPSCVMMMIKSKSWSSSPERNNNYNNKG 68
           +ILK W RCKSLGS  +         S +N++   C      S+   S  +R      K 
Sbjct: 1   MILKAWARCKSLGSRGNRKCARNVCNSLTNSRSWHCTTTRSSSREEDSIKKRK-----KK 55

Query: 69  CQVAPEGCFSVYVGPQRQRFVIKTEFANHPLFKILLEDAESEYGYENQGPIMLPCDVDLF 128
            QVAP+GCFSVYVG ++QRFV+KTEFANHPLFK+LLEDAE EYG+ ++GP++LPCDVDLF
Sbjct: 56  VQVAPQGCFSVYVGQEQQRFVMKTEFANHPLFKVLLEDAELEYGFNSEGPLLLPCDVDLF 115

Query: 129 FKVLAELESTGDEDDDHDIANKGCCSPLVLCSSPARRPNHRISSKDYGAGAGGAYRLLSP 188
            KVLAE+    D  ++         S LVLCS      N R           GAYRLLSP
Sbjct: 116 CKVLAEM----DSGEEISTTPSWSSSLLVLCSPSCYTTNKR----------SGAYRLLSP 161

Query: 189 SRLLKMN 195
           S++LK+N
Sbjct: 162 SKMLKLN 168

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547624|ref|XP_002514869.1| hypothetical protein RCOM_1078910 [Ricinus communis] gi|223545920|gb|EEF47423.1| hypothetical protein RCOM_1078910 [Ricinus communis]

 Score =  157 bits (397), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 95/198 (47%), Positives = 123/198 (62%), Gaps = 25/198 (12%)

Query: 1   MDIVKQKWKK-NLILKTWERCKSLGSSSSSGSGSGSSSNNKKPSCVMMMIKSKSWSSSPE 59
           MD  ++K KK NLI+KTWERCKSLG  S   S    S   K  S   + I   S     +
Sbjct: 1   MDFTREKRKKGNLIIKTWERCKSLGRGSKRTSRLVGSLITKSKSLPHLHIHP-SIGDDDQ 59

Query: 60  RNNNYNNKGCQVAPEGCFSVYVGPQRQRFVIKTEFANHPLFKILLEDAESEYGYENQGPI 119
           R+++ +++  +VAPEGCFSVYVGP++QRFVIKTE+ANHPLFK+LLE+AESEYGY  +GP+
Sbjct: 60  RSSSSSSRKRRVAPEGCFSVYVGPEKQRFVIKTEYANHPLFKVLLEEAESEYGYNPEGPL 119

Query: 120 MLPCDVDLFFKVLAELESTGDEDDDHDIANKGCCSPLVLCSSPARRPNHRISSKDYGAGA 179
            LPC+VD+F KVL  ++S+ DE   H    +GC                   SK+Y    
Sbjct: 120 ALPCNVDIFCKVLVAMDSSDDE-AIHPHRRQGCG-----------------FSKNY---- 157

Query: 180 GGAYRLLSPSRLLKMNGF 197
            G+YRLLSPSR   +N F
Sbjct: 158 -GSYRLLSPSRTTALNHF 174

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569123|ref|XP_003552755.1| PREDICTED: uncharacterized protein LOC100777217 [Glycine max]

 Score =  154 bits (388), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 88/187 (47%), Positives = 110/187 (58%), Gaps = 37/187 (19%)

Query: 12  LILKTWERCKSLGSSSSSGSGSGSSSNNKKPSCVMMMIKSKSW-SSSPERNNNYNNKGCQ 70
           LI KTWERCKS+G S    S +  ++N          ++SKSW + +   N N N     
Sbjct: 22  LITKTWERCKSIGRSRKEASSNSLNTNTNT-------MRSKSWPNRNRAENKNKNKNSTI 74

Query: 71  VAPEGCFSVYVGPQRQRFVIKTEFANHPLFKILLEDAESEYGYENQGPIMLPCDVDLFFK 130
           VAPEGCFSVYVGPQ QRFVIKTE+ANHPLFK+LLE+AESEYGY +QGP+ LPC VD+F+K
Sbjct: 75  VAPEGCFSVYVGPQMQRFVIKTEYANHPLFKMLLEEAESEYGYNSQGPLALPCHVDVFYK 134

Query: 131 VLAELESTGDEDDDHDIANKGCCSPLVLCSSPARRPNHRISSKDYGAGAGGAYRLLSPSR 190
           VL E+    D D+ H     G C+ +       R P               AY+LL  S 
Sbjct: 135 VLMEM----DSDETH-----GSCACV------KRSP--------------SAYQLLRTSP 165

Query: 191 LLKMNGF 197
           +L +N F
Sbjct: 166 MLSINHF 172

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388521003|gb|AFK48563.1| unknown [Medicago truncatula]

 Score =  151 bits (382), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 88/189 (46%), Positives = 108/189 (57%), Gaps = 41/189 (21%)

Query: 9   KKNLILKTWERCKSLGSSSSSGSGSGSSSNNKKPSCVMMMIKSKSWSSSPERNNNYNNKG 68
           K  LI KTWERCKS+G    S S S S +   +        +SKSW   P    N   K 
Sbjct: 15  KIGLITKTWERCKSIGGGHKSKSYSSSVTPTTR--------RSKSWPGLPRGEENRRKK- 65

Query: 69  CQVAPEGCFSVYVGPQRQRFVIKTEFANHPLFKILLEDAESEYGYENQGPIMLPCDVDLF 128
             VAPEGCFSVYVGPQ QRFVIKTE+ANHPLFK+LLE+AESEYGY  QGP+ LPC+VD+F
Sbjct: 66  --VAPEGCFSVYVGPQMQRFVIKTEYANHPLFKMLLEEAESEYGYSCQGPLALPCNVDVF 123

Query: 129 FKVLAELESTGDEDDDHDIANKGCCSPLVLCSSPARRPNHRISSKDYGAGAGGAYRLLSP 188
           +KVL E+++                +PL  C+    R                +Y LLSP
Sbjct: 124 YKVLMEMDNE---------------APLQGCTFGRSR---------------SSYHLLSP 153

Query: 189 SRLLKMNGF 197
           SR++ +N F
Sbjct: 154 SRMIVLNNF 162

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|315937294|gb|ADU56197.1| SAUR family protein [Jatropha curcas]

 Score =  149 bits (377), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 94/213 (44%), Positives = 121/213 (56%), Gaps = 54/213 (25%)

Query: 1   MDIVKQKWKK-NLILKTWERCKSLGSSSSSGSGSGSSSNNKKPSCVMMMIKSKSWSSSP- 58
           MD++K K +K NLI+KTWERCKSLG SS   S    S          +  KSKSW   P 
Sbjct: 1   MDVIKVKERKGNLIIKTWERCKSLGRSSKKTSRIVKS----------LTAKSKSWPRVPP 50

Query: 59  -------ERNNNYNNKGC-----QVAPEGCFSVYVGPQRQRFVIKTEFANHPLFKILLED 106
                  E + +  NK C     +V PEGCFSV VGPQ+QRF IKTE+ANHPLFKILLE+
Sbjct: 51  LIHDEGQEDDQDNKNKKCSSRKRKVTPEGCFSVCVGPQKQRFFIKTEYANHPLFKILLEE 110

Query: 107 AESEYGYENQGPIMLPCDVDLFFKVLAELESTGDEDDDHDIANK--GCCSPLVLCSSPAR 164
           AESEYGY  +GP+ LPC+VD+F +VL+ +       D+ +  N+  GC            
Sbjct: 111 AESEYGYNPEGPLALPCNVDIFVEVLSAMA------DNEETTNRIHGCG----------- 153

Query: 165 RPNHRISSKDYGAGAGGAYRLLSPSRLLKMNGF 197
                  SK++      +YRLLSPSR++ +  F
Sbjct: 154 ------FSKNF-----NSYRLLSPSRMVAIITF 175

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224057798|ref|XP_002299329.1| SAUR family protein [Populus trichocarpa] gi|222846587|gb|EEE84134.1| SAUR family protein [Populus trichocarpa]

 Score =  148 bits (373), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 76/147 (51%), Positives = 101/147 (68%), Gaps = 8/147 (5%)

Query: 1   MDIVKQKWKK--NLILKTWERCKSLGSSSSSGSGSGSSSNNKKPSCVMMMIKSKSWSSSP 58
           MD+ K K K   NLI+KTWERCKS+G  S   S    S   K  S   + +      S  
Sbjct: 1   MDMSKGKGKTEGNLIIKTWERCKSIGRGSKRTSRLVRSLTPKSKSYPHIKV------SLE 54

Query: 59  ERNNNYNNKGCQVAPEGCFSVYVGPQRQRFVIKTEFANHPLFKILLEDAESEYGYENQGP 118
           + ++  +++  +VAPEGCFSVYVGPQ+QRFVIKTE+ANHPLFK+LLE+AESEYGY ++GP
Sbjct: 55  DDHDRKHSRQRRVAPEGCFSVYVGPQKQRFVIKTEYANHPLFKMLLEEAESEYGYSSEGP 114

Query: 119 IMLPCDVDLFFKVLAELESTGDEDDDH 145
           + LPC+VD+F++VL  +E T  +D  H
Sbjct: 115 LTLPCNVDIFYRVLMAVEDTNIDDKIH 141

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508835|ref|XP_003523159.1| PREDICTED: indole-3-acetic acid-induced protein ARG7-like [Glycine max]

 Score =  143 bits (361), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 78/185 (42%), Positives = 116/185 (62%), Gaps = 35/185 (18%)

Query: 1   MDIVKQKWKKNLILKTWERCKSLGSSSSSGSGSGSSSNNKKPSCVMMMIKSKSWSSSPER 60
           M +VK KWK+N+I K WE C+                 +++P      +K KS S   E 
Sbjct: 1   MGLVKGKWKQNMISKAWEGCRL---------------TSRRPH-----LKLKSLS---EN 37

Query: 61  NNNYNNKGCQVAPEGCFSVYVGPQRQRFVIKTEFANHPLFKILLEDAESEYGYENQGPIM 120
           ++++  KG Q+AP GCFSV+VGP+RQRFV+KT++ NHPLF++LLE+ E EYG+E+ GPI 
Sbjct: 38  DDDHEKKGSQIAPHGCFSVHVGPERQRFVVKTKYVNHPLFQMLLEETEQEYGFESDGPIW 97

Query: 121 LPCDVDLFFKVLAELESTGDEDDDHDIAN--------KGCCSPLVLCSSPARRPNHRISS 172
           LPC+VDLF+KVLAE++  G+E++++ I +             P ++  SP R  +H   +
Sbjct: 98  LPCNVDLFYKVLAEMD--GEENNNNIIIHGFRRSFITMAKVFPFLVLRSPPRLLSH--MN 153

Query: 173 KDYGA 177
           KD+GA
Sbjct: 154 KDHGA 158

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454953|ref|XP_004145218.1| PREDICTED: uncharacterized protein LOC101219975 [Cucumis sativus] gi|449470848|ref|XP_004153127.1| PREDICTED: uncharacterized protein LOC101220090 [Cucumis sativus] gi|449519926|ref|XP_004166985.1| PREDICTED: uncharacterized LOC101220090 [Cucumis sativus]

 Score =  142 bits (357), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 75/155 (48%), Positives = 97/155 (62%), Gaps = 25/155 (16%)

Query: 47  MMIKSKSWSSSPERNNNYNNKGCQVAPEGCFSVYVGPQRQRFVIKTEFANHPLFKILLED 106
           M  KSKS +S P+           VAP+GCF+VYVG +RQRFV++TEFANHPLF++LLED
Sbjct: 23  MSKKSKSLNSGPKYKT-------PVAPDGCFAVYVGAERQRFVVRTEFANHPLFQMLLED 75

Query: 107 AESEYGYENQGPIMLPCDVDLFFKVLAELESTGDEDDDHDIANKG----CCSPLVLCSSP 162
           AE EYGY +QGPI+LPC+V +F+ VLAE++  GD   +     +      CSPL L S  
Sbjct: 76  AEVEYGYNSQGPILLPCEVGMFYNVLAEMDDGGDGISNRWTGGESGGLIACSPLRLTSCG 135

Query: 163 ARRPNHRISSKDYGAGAGGAYRLLSPSRLLKMNGF 197
           +R               GG YR+LSPS +LK+NG 
Sbjct: 136 SRN--------------GGGYRVLSPSSMLKLNGL 156

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	197
TAIR|locus:2163310	183	AT5G50760 "AT5G50760" [Arabido	0.888	0.956	0.394	4.6e-25
TAIR|locus:2079552	136	AT3G61900 "AT3G61900" [Arabido	0.472	0.683	0.41	3e-14
TAIR|locus:2084851	160	AT3G43120 [Arabidopsis thalian	0.355	0.437	0.457	3e-14
TAIR|locus:2180464	190	AT5G20810 "AT5G20810" [Arabido	0.390	0.405	0.417	3.4e-13
TAIR|locus:2139569	150	AT4G34750 [Arabidopsis thalian	0.350	0.46	0.434	1.2e-12
TAIR|locus:2011801	110	AT1G56150 "AT1G56150" [Arabido	0.390	0.7	0.415	1.9e-12
TAIR|locus:2087700	132	AT3G12830 "AT3G12830" [Arabido	0.360	0.537	0.408	3.5e-11
TAIR|locus:2062759	121	AT2G46690 "AT2G46690" [Arabido	0.324	0.528	0.432	4.5e-11
TAIR|locus:2005694	154	AT1G75590 "AT1G75590" [Arabido	0.284	0.363	0.446	5.8e-11
TAIR|locus:2047117	104	AT2G21220 "AT2G21220" [Arabido	0.380	0.721	0.363	9.4e-11

TAIR|locus:2163310 AT5G50760 "AT5G50760" [Arabidopsis thaliana (taxid:3702)]

 Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
 Identities = 77/195 (39%), Positives = 100/195 (51%)

Query:    10 KNLILKTWERCKXXXXXXXXXXXXXXXXNNKKPSCVMMMIXXXXXXXXPERNNNYNNKGC 69
             KN ILKTW + K                  K  SC               ++N    K  
Sbjct:     2 KNPILKTWRKVKSFGHTSSSTTPSFT----KSKSC------HGSFRLEDAKSNESKGKPK 51

Query:    70 QVAPE-GCFSVYVGPQRQRFVIKTEFANHPLFKILLEDAESEYGYENQGPIMLPCDVDLF 128
             + +P  G F+VYVGP +QR V+KT+  NHPLFK LLEDAE+EYGY   GPI+LPC+VD F
Sbjct:    52 KESPSHGFFTVYVGPTKQRIVVKTKLLNHPLFKNLLEDAETEYGYRRDGPIVLPCEVDFF 111

Query:   129 FKVLAELEST-G--DEDDDHDIANKGCCSPLV--LCSSPARRPNHRISSKDYXXXXXXXY 183
             FK LA+++S  G  D DDD+D  +    SP+   +CS P R     ++           Y
Sbjct:   112 FKALADMKSNPGHHDHDDDYDDDDGFTNSPICGFVCS-PYRSYGGGVTDP-LAMKRNGSY 169

Query:   184 RLL-SPSRLLKMNGF 197
             +LL SPS L K+  F
Sbjct:   170 KLLRSPS-LFKLTRF 183

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2079552 AT3G61900 "AT3G61900" [Arabidopsis thaliana (taxid:3702)]

 Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
 Identities = 41/100 (41%), Positives = 59/100 (59%)

Query:    60 RNNNY--NNK-GCQVAPEGCFSVYVGP---QRQRFVIKTEFANHPLFKILLEDAESEYGY 113
             R NN   N+K G +  P+GC ++ VG    ++QRFV+   + NHPLF  LL +AE EYG+
Sbjct:    15 RPNNVKSNSKHGIKDVPKGCLAIKVGSKEEEKQRFVVPVFYFNHPLFMQLLREAEEEYGF 74

Query:   114 ENQGPIMLPCDVDLFFKVLAELESTGDEDDDHDIANK-GC 152
             E +G I +PC V++F  V   +      DDD D + + GC
Sbjct:    75 EQKGTITIPCHVEVFRYVQDMINRERSLDDDDDASKQTGC 114

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2084851 AT3G43120 [Arabidopsis thaliana (taxid:3702)]

 Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
 Identities = 32/70 (45%), Positives = 50/70 (71%)

Query:    73 PEGCFSVYVGPQRQRFVIKTEFANHPLFKILLEDAESEYGYENQGPIMLPCDVDLFFKVL 132
             P+G  +VYVGP+ +RF+I T F +H LFK+LLE AE EYG+++ G + +PC+V+ F  +L
Sbjct:    80 PKGYLAVYVGPELRRFIIPTNFLSHSLFKVLLEKAEEEYGFDHSGALTIPCEVETFKYLL 139

Query:   133 AELESTGDED 142
               +E+   +D
Sbjct:   140 KCIENHPKDD 149

GO:0005634 "nucleus" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0005516 "calmodulin binding" evidence=TAS;IPI

TAIR|locus:2180464 AT5G20810 "AT5G20810" [Arabidopsis thaliana (taxid:3702)]

 Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
 Identities = 33/79 (41%), Positives = 52/79 (65%)

Query:    73 PEGCFSVYVGPQRQRFVIKTEFANHPLFKILLEDAESEYGYENQGPIMLPCDVDLFFKVL 132
             P+G  +VYVGP+ +RF+I T + +H LFK+LLE AE E+G++  G + +PC+V+ F  +L
Sbjct:    80 PKGNLAVYVGPELRRFIIPTSYLSHSLFKVLLEKAEEEFGFDQSGALTIPCEVETFKYLL 139

Query:   133 AELESTGDEDDDHDIANKG 151
               +E+  +  D H   N G
Sbjct:   140 KCMEN--NLKDLHPDDNSG 156

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0005777 "peroxisome" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2139569 AT4G34750 [Arabidopsis thaliana (taxid:3702)]

 Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 30/69 (43%), Positives = 44/69 (63%)

Query:    65 NNKGCQVAPEGCFSVYVGPQRQRFVIKTEFANHPLFKILLEDAESEYGYENQGPIMLPCD 124
             NN      P G  +V VG  R+R+V++ +  NHP+F+ LL +AE EYG+ N GP+ +PCD
Sbjct:    30 NNDPVSDVPPGHVAVSVGENRRRYVVRAKHLNHPIFRRLLAEAEEEYGFANVGPLAIPCD 89

Query:   125 VDLFFKVLA 133
               LF  ++A
Sbjct:    90 ESLFEDIIA 98

GO:0005634 "nucleus" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0005516 "calmodulin binding" evidence=ISS

TAIR|locus:2011801 AT1G56150 "AT1G56150" [Arabidopsis thaliana (taxid:3702)]

 Score = 166 (63.5 bits), Expect = 1.9e-12, P = 1.9e-12
 Identities = 32/77 (41%), Positives = 44/77 (57%)

Query:    59 ERNNNYNNKGCQVAPEGCFSVYVGPQRQRFVIKTEFANHPLFKILLEDAESEYGYENQGP 118
             +R      K     PEG   VYVG + +RFV+  E  NHP+F  LL+ +  EYGYE QG 
Sbjct:    25 QRGRTKKEKHKSWVPEGHVPVYVGHEMERFVVNAELLNHPVFVALLKQSAQEYGYEQQGV 84

Query:   119 IMLPCDVDLFFKVLAEL 135
             + +PC V +F ++L  L
Sbjct:    85 LRIPCHVLVFERILESL 101

GO:0003674 "molecular_function" evidence=ND

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2087700 AT3G12830 "AT3G12830" [Arabidopsis thaliana (taxid:3702)]

 Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 29/71 (40%), Positives = 42/71 (59%)

Query:    65 NNKGCQVAPEGCFSVYVGPQRQRFVIKTEFANHPLFKILLEDAESEYGYENQGPIMLPCD 124
             + K     PEG   VYVG + +RFV+  E  NHP+F  LL  +  EYGYE +G + +PC 
Sbjct:    43 SKKQTSSVPEGHVPVYVGDEMERFVVSAELLNHPVFIGLLNRSAQEYGYEQKGVLQIPCH 102

Query:   125 VDLFFKVLAEL 135
             V +F +++  L
Sbjct:   103 VLVFERIMESL 113

GO:0003674 "molecular_function" evidence=ND

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2062759 AT2G46690 "AT2G46690" [Arabidopsis thaliana (taxid:3702)]

 Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
 Identities = 29/67 (43%), Positives = 45/67 (67%)

Query:    73 PEGCFSVYVGPQ---RQRFVIKTEFANHPLFKILLEDAESEYGYENQGPIMLPCDVDLFF 129
             P+GC ++ VG Q   +QRF++   + NHPLF  LL++AE EYG++ +G I +PC V+ F 
Sbjct:    25 PKGCLAIKVGSQGEEQQRFIVPVLYFNHPLFMQLLKEAEDEYGFDQKGTITIPCHVEEFR 84

Query:   130 KVLAELE 136
              V A ++
Sbjct:    85 YVQALID 91

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0006816 "calcium ion transport" evidence=RCA

TAIR|locus:2005694 AT1G75590 "AT1G75590" [Arabidopsis thaliana (taxid:3702)]

 Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
 Identities = 25/56 (44%), Positives = 39/56 (69%)

Query:    73 PEGCFSVYVGPQRQRFVIKTEFANHPLFKILLEDAESEYGYENQGPIMLPCDVDLF 128
             P G  +VYVG   +RFV++  + NHP+ + LL  AE E+G+ NQGP+++PC+  +F
Sbjct:    43 PSGHVAVYVGSSCRRFVVRATYLNHPVLRNLLVQAEEEFGFVNQGPLVIPCEESVF 98

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2047117 AT2G21220 "AT2G21220" [Arabidopsis thaliana (taxid:3702)]

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 28/77 (36%), Positives = 46/77 (59%)

Query:    60 RNNNYNNKGCQV-APEGCFSVYVGPQRQRFVIKTEFANHPLFKILLEDAESEYGYENQGP 118
             +N  Y+  G  V  P+G F VYVG +R R+++   F  HP FK LL+ AE E+G+ +   
Sbjct:    27 KNQCYDEDGLPVDVPKGHFPVYVGEKRSRYIVPISFLTHPKFKSLLQQAEEEFGFNHDMG 86

Query:   119 IMLPCDVDLFFKVLAEL 135
             + +PC+ ++ F+ L  +
Sbjct:    87 LTIPCE-EVVFRSLTSM 102

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	197
pfam02519	99	pfam02519, Auxin_inducible, Auxin responsive prote	2e-30
PLN03090	104	PLN03090, PLN03090, auxin-responsive family protei	5e-13
PLN03220	105	PLN03220, PLN03220, uncharacterized protein; Provi	2e-09
PLN03219	108	PLN03219, PLN03219, uncharacterized protein; Provi	6e-09

>gnl|CDD|217082 pfam02519, Auxin_inducible, Auxin responsive protein

 Score =  107 bits (268), Expect = 2e-30
 Identities = 34/98 (34%), Positives = 55/98 (56%), Gaps = 1/98 (1%)

Query: 39  NKKPSCVMMMIKSKSWSSSPERNNNYNNKGCQVAPEGCFSVYVGPQRQRFVIKTEFANHP 98
           ++            S +S   R ++  +    V P+G F+VYVG + +RFV+   + NHP
Sbjct: 3   SRLKKASSAKKWILSAASGRSRGSSSKSSSADV-PKGHFAVYVGEETRRFVVPISYLNHP 61

Query: 99  LFKILLEDAESEYGYENQGPIMLPCDVDLFFKVLAELE 136
           LF+ LL+ AE E+G++  G + +PCDV +F  +L  LE
Sbjct: 62  LFQELLDRAEEEFGFDQDGGLTIPCDVVVFEHLLWMLE 99

This family consists of the protein products of the ARG7 auxin responsive genes family none of which have any identified functional role. Length = 99

>gnl|CDD|178639 PLN03090, PLN03090, auxin-responsive family protein; Provisional

 Score = 62.1 bits (151), Expect = 5e-13
 Identities = 27/81 (33%), Positives = 47/81 (58%), Gaps = 2/81 (2%)

Query: 56  SSPERNNNYNNKGCQV-APEGCFSVYVGPQRQRFVIKTEFANHPLFKILLEDAESEYGYE 114
           SS  +   Y+  G  +  P+G F VYVG  R R+++   F  HP F+ LL+ AE E+G++
Sbjct: 23  SSLGKKQGYDEDGLPLDVPKGHFPVYVGENRSRYIVPISFLTHPEFQSLLQQAEEEFGFD 82

Query: 115 NQGPIMLPCDVDLFFKVLAEL 135
           +   + +PC+ ++ F+ L  +
Sbjct: 83  HDMGLTIPCE-EVVFRSLTSM 102

Length = 104

>gnl|CDD|178759 PLN03220, PLN03220, uncharacterized protein; Provisional

 Score = 52.4 bits (125), Expect = 2e-09
 Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 6/84 (7%)

Query: 55  SSSPERNNNYNNKGCQVAPEGCFSVYVGPQ----RQRFVIKTEFANHPLFKILLEDAESE 110
           +S   RN   ++    V P+G  +VYVG Q    ++RFV+   F NHP FK  L  AE E
Sbjct: 19  NSLANRNRTSSSSSDHV-PKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEE 77

Query: 111 YGYEN-QGPIMLPCDVDLFFKVLA 133
           +G+ +  G + +PC  ++F  ++A
Sbjct: 78  FGFNHPMGGLTIPCREEVFLDLIA 101

Length = 105

>gnl|CDD|178758 PLN03219, PLN03219, uncharacterized protein; Provisional

 Score = 51.7 bits (123), Expect = 6e-09
 Identities = 29/87 (33%), Positives = 50/87 (57%), Gaps = 7/87 (8%)

Query: 49  IKSKSWSSSPERNNNYNNKGCQVAPEGCFSVYVGPQ--RQRFVIKTEFANHPLFKILLED 106
           +++K+ SSSP  +   +     + P+G  +VYVG Q  ++RFV+   + NHPLF+  L  
Sbjct: 20  MRNKNGSSSPSSSTTTSG----LVPKGHVAVYVGEQMEKKRFVVPISYLNHPLFREFLNR 75

Query: 107 AESEYGYENQ-GPIMLPCDVDLFFKVL 132
           AE E G+ +  G + +PC  + F  ++
Sbjct: 76  AEEECGFHHSMGGLTIPCREESFLHLI 102

Length = 108

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	197
PF02519	100	Auxin_inducible: Auxin responsive protein; InterPr	100.0
PLN03090	104	auxin-responsive family protein; Provisional	99.98
PLN03220	105	uncharacterized protein; Provisional	99.97
PLN03219	108	uncharacterized protein; Provisional	99.96
PF02214	94	BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi	83.07
PRK02899	197	adaptor protein; Provisional	82.7

>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []

Probab=100.00  E-value=3.4e-34  Score=220.02  Aligned_cols=67  Identities=51%  Similarity=0.988  Sum_probs=65.4

Q ss_pred             cCCCCCeEEEEecCCCeeEEEEeccCCcHHHHHHHHHHHHhcCcCCCCCeEecCcHHHHHHHHHHHh
Q 029186           70 QVAPEGCFSVYVGPQRQRFVIKTEFANHPLFKILLEDAESEYGYENQGPIMLPCDVDLFFKVLAELE  136 (197)
Q Consensus        70 ~~vpkG~~aVYVG~e~rRFvVpv~yLnhPlF~eLLe~AeEEfGf~~~G~L~IPCdv~~Fe~vL~~i~  136 (197)
                      ..+|+||||||||++++||+||++|||||+|++||++|||||||+++|+|+||||+++|++|||+|+
T Consensus        34 ~~vp~G~~~VyVG~~~~Rfvvp~~~L~hp~f~~LL~~aeeEfG~~~~G~l~iPC~~~~Fe~~l~~le  100 (100)
T PF02519_consen   34 SDVPKGHFAVYVGEERRRFVVPVSYLNHPLFQELLEQAEEEFGFDQDGPLTIPCDVVLFEHLLWLLE  100 (100)
T ss_pred             CCCCCCeEEEEeCccceEEEechHHcCchhHHHHHHHHhhhcCcCCCCcEEeeCCHHHHHHHHHHhC
Confidence            6789999999999999999999999999999999999999999999999999999999999999985

Proteins from this ARG7 auxin responsive genes family have no identified functional role [].

>PLN03090 auxin-responsive family protein; Provisional

Probab=99.98  E-value=2.8e-32  Score=212.08  Aligned_cols=68  Identities=32%  Similarity=0.695  Sum_probs=65.7

Q ss_pred             CCcCCCCCeEEEEecCCCeeEEEEeccCCcHHHHHHHHHHHHhcCcCCCCCeEecCcHHHHHHHHHHH
Q 029186           68 GCQVAPEGCFSVYVGPQRQRFVIKTEFANHPLFKILLEDAESEYGYENQGPIMLPCDVDLFFKVLAEL  135 (197)
Q Consensus        68 ~~~~vpkG~~aVYVG~e~rRFvVpv~yLnhPlF~eLLe~AeEEfGf~~~G~L~IPCdv~~Fe~vL~~i  135 (197)
                      .+.+||+||||||||++++||+||++|||||+|++||++|||||||+++|+|+||||+++|++|+|+|
T Consensus        36 ~~~~vpkG~~aVyVG~~~~RfvVp~~~L~hP~F~~LL~~aeeEfGf~~~G~L~IPC~~~~Fe~ll~~i  103 (104)
T PLN03090         36 LPLDVPKGHFPVYVGENRSRYIVPISFLTHPEFQSLLQQAEEEFGFDHDMGLTIPCEEVVFRSLTSMI  103 (104)
T ss_pred             CCCCCCCCcEEEEECCCCEEEEEEHHHcCCHHHHHHHHHHHHHhCCCCCCcEEEeCCHHHHHHHHHHh
Confidence            45679999999999999999999999999999999999999999999999999999999999999998

>PLN03220 uncharacterized protein; Provisional

Probab=99.97  E-value=2.2e-30  Score=201.68  Aligned_cols=66  Identities=38%  Similarity=0.852  Sum_probs=62.2

Q ss_pred             CCcCCCCCeEEEEecC----CCeeEEEEeccCCcHHHHHHHHHHHHhcCcCC-CCCeEecCcHHHHHHHHH
Q 029186           68 GCQVAPEGCFSVYVGP----QRQRFVIKTEFANHPLFKILLEDAESEYGYEN-QGPIMLPCDVDLFFKVLA  133 (197)
Q Consensus        68 ~~~~vpkG~~aVYVG~----e~rRFvVpv~yLnhPlF~eLLe~AeEEfGf~~-~G~L~IPCdv~~Fe~vL~  133 (197)
                      .+.+||+||||||||+    |++|||||++|||||+|++||++|||||||++ +|+|+|||+++.|+++|.
T Consensus        31 ~~~~VPkGh~aVyVGe~~~~e~kRFVVPv~yL~hP~F~~LL~~AeEEfGf~~~~G~L~IPCd~~~F~~ll~  101 (105)
T PLN03220         31 SSDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFGFNHPMGGLTIPCREEVFLDLIA  101 (105)
T ss_pred             ccCCCCCCeEEEEECCCCCccceEEEEEHHHcCChHHHHHHHHHHHHhCCCCCCCCEEeeCCHHHHHHHHH
Confidence            4578999999999997    57999999999999999999999999999998 699999999999999986

>PLN03219 uncharacterized protein; Provisional

Probab=99.96  E-value=4.2e-30  Score=200.98  Aligned_cols=70  Identities=33%  Similarity=0.765  Sum_probs=64.3

Q ss_pred             CCCCcCCCCCeEEEEecC--CCeeEEEEeccCCcHHHHHHHHHHHHhcCcCC-CCCeEecCcHHHHHHHHHHH
Q 029186           66 NKGCQVAPEGCFSVYVGP--QRQRFVIKTEFANHPLFKILLEDAESEYGYEN-QGPIMLPCDVDLFFKVLAEL  135 (197)
Q Consensus        66 ~~~~~~vpkG~~aVYVG~--e~rRFvVpv~yLnhPlF~eLLe~AeEEfGf~~-~G~L~IPCdv~~Fe~vL~~i  135 (197)
                      +..+..||+||||||||+  |++|||||++|||||+|++||++|||||||++ +|+|+|||+++.|++||..-
T Consensus        33 ~~~~~~vpkGh~aVYVG~~~E~kRFvVPi~yL~hP~F~~LL~~AeEEfGf~~~~G~L~IPCd~~~F~~ll~~~  105 (108)
T PLN03219         33 TTTSGLVPKGHVAVYVGEQMEKKRFVVPISYLNHPLFREFLNRAEEECGFHHSMGGLTIPCREESFLHLITSH  105 (108)
T ss_pred             CCCCCCCCCCeEEEEECCCCCceEEEEEHHHcCChHHHHHHHHHHHHhCCCCCCCCEEEeCCHHHHHHHHHhh
Confidence            345578999999999997  58999999999999999999999999999996 69999999999999999753

>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]

Probab=83.07  E-value=1.3  Score=32.21  Aligned_cols=59  Identities=20%  Similarity=0.247  Sum_probs=44.8

Q ss_pred             EEEecCCCeeEEEEeccCC-c--HHHHHHHHHHHHhcCcCCCCCeEecCcHHHHHHHHHHHhcC
Q 029186           78 SVYVGPQRQRFVIKTEFAN-H--PLFKILLEDAESEYGYENQGPIMLPCDVDLFFKVLAELEST  138 (197)
Q Consensus        78 aVYVG~e~rRFvVpv~yLn-h--PlF~eLLe~AeEEfGf~~~G~L~IPCdv~~Fe~vL~~i~s~  138 (197)
                      .+=||.  ++|.++.+.|. +  ..|..|+..-.....-..+|.+-|-++...|++||.-++.+
T Consensus         2 ~lNVGG--~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fiDRdp~~F~~IL~ylr~~   63 (94)
T PF02214_consen    2 RLNVGG--TIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFIDRDPELFEYILNYLRTG   63 (94)
T ss_dssp             EEEETT--EEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEESS-HHHHHHHHHHHHHT
T ss_pred             EEEECC--EEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEeccChhhhhHHHHHHhhc
Confidence            345774  89999998887 4  47888888652222234579999999999999999999985

They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....

>PRK02899 adaptor protein; Provisional

Probab=82.70  E-value=1.1  Score=38.21  Aligned_cols=25  Identities=40%  Similarity=0.905  Sum_probs=22.0

Q ss_pred             cHHHHHHHHHHHHhcCcCCCCCeEe
Q 029186           97 HPLFKILLEDAESEYGYENQGPIML  121 (197)
Q Consensus        97 hPlF~eLLe~AeEEfGf~~~G~L~I  121 (197)
                      +-+|.++|++|..|+||..+|||+|
T Consensus        38 e~lF~~mm~Ea~~e~~F~~~~pl~~   62 (197)
T PRK02899         38 HQLFRDMMQEANKELGFEADGPIAV   62 (197)
T ss_pred             HHHHHHHHHHhhhccCcccCCeEEE
Confidence            4578888999999999999999974

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00