Citrus Sinensis ID: 029196

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------
Protein Sequence
MASASAETASSSSEIATAAASPTTERRGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQRRIRQAAAAAANES
Secondary Structure (PSIPRED)
ccccccccccccHHHHHccccccccccccccccccccHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccccEEEEEEEccccEEEEEEccccEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHccccEEEHHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccHHHccccHHcccccccccccccccccccHHHcHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccccEEEEEEEcccEEEEEEEccccEEEEEEcccEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHccEEEHHHHHEEcHcHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
masasaetasssseiataaasptterrgipaaqFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKeggealtadfevsegifsrariedtdSVCLWLGANVMLEYSCDEKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQRRIRQAAAAAANES
Flexible Loop (DISEMBL)
masasaetasssseiataaasptterrgIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKeggealtadfevsEGIFsrariedtdSVCLWLGANVMLEYSCDEKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQRRIRQAAAAAANES
Low Complexity Region (SEG)
MasasaetasssseiataaasptteRRGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQRRIRQaaaaaaNES
Disordered region (IsUnstruct)
******************************AAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQRRI***********
Disordered Region (DISOPRED)
********************************QFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMK************PDIEKCLDIVA**************DFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWD*****************
Disordered Region (DISEMBL)
*************************RRGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQRR************
Disordered Region (DISPRO)
****************************IPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQRRIRQ*********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASASAETASSSSEIATAAASPTTERRGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEKNxxxxxxxxxxxxxxxxxxxxxVTITQVTVARVYNWDVHQRRIRQAAAAAANES
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	197	2.2.26 [Sep-21-2011]
P57741	195	Probable prefoldin subuni	yes	no	0.862	0.871	0.801	4e-79
P61759	196	Prefoldin subunit 3 OS=Mu	yes	no	0.893	0.897	0.426	3e-36
Q5RCG9	197	Prefoldin subunit 3 OS=Po	yes	no	0.893	0.893	0.418	6e-36
P61758	197	Prefoldin subunit 3 OS=Ho	yes	no	0.893	0.893	0.413	1e-35
Q2TBX2	197	Prefoldin subunit 3 OS=Bo	yes	no	0.893	0.893	0.424	4e-34
O18054	185	Probable prefoldin subuni	yes	no	0.837	0.891	0.342	2e-27
Q54LS2	195	Probable prefoldin subuni	yes	no	0.781	0.789	0.390	5e-26
Q9VGP6	185	Probable prefoldin subuni	yes	no	0.786	0.837	0.387	1e-25
P48363	199	Prefoldin subunit 3 OS=Sa	yes	no	0.852	0.844	0.340	8e-24
Q10143	169	Probable prefoldin subuni	yes	no	0.771	0.899	0.379	5e-23

>sp|P57741|PFD3_ARATH Probable prefoldin subunit 3 OS=Arabidopsis thaliana GN=At5g49510 PE=2 SV=1

 Score =  293 bits (751), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 141/176 (80%), Positives = 157/176 (89%), Gaps = 6/176 (3%)

Query: 24  TERRGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPD 83
           TERRGIPAA+F++DV+T+LSQ  LD NSALAF QERLQQYK+VEMKLLAQQRDLQAKIPD
Sbjct: 14  TERRGIPAAKFIQDVETYLSQSGLDPNSALAFHQERLQQYKVVEMKLLAQQRDLQAKIPD 73

Query: 84  IEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDE- 142
           IEKCL++VATL+AKK  GEAL ADFEVSEGI+SRA IEDTDSVCLWLGANVMLEYSC+E 
Sbjct: 74  IEKCLEVVATLEAKKGTGEALLADFEVSEGIYSRACIEDTDSVCLWLGANVMLEYSCEEA 133

Query: 143 -----KNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQRRIRQAAAAA 193
                 NLENAKASLEVL+ADLQFLRDQVT+TQVT+ARVYNWDVHQRR++Q    A
Sbjct: 134 SALLKNNLENAKASLEVLVADLQFLRDQVTVTQVTIARVYNWDVHQRRVKQVTPTA 189

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.
Arabidopsis thaliana (taxid: 3702)

>sp|P61759|PFD3_MOUSE Prefoldin subunit 3 OS=Mus musculus GN=Vbp1 PE=2 SV=2

 Score =  151 bits (381), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 78/183 (42%), Positives = 113/183 (61%), Gaps = 7/183 (3%)

Query: 9   ASSSSEIATAAASPTTERRGIPAAQFVEDVQTFLSQLDLDV-NSALAFLQERLQQYKLVE 67
           A     + TAA +      GIP A FVEDV +F+ Q   +  ++ L  L E+ Q+YK +E
Sbjct: 4   AKDGCGLETAAGNGRRLHLGIPEAVFVEDVDSFMKQPGNETADTVLKKLDEQYQKYKFME 63

Query: 68  MKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVC 127
           + L  ++R L+ +IP+I++ L+I+  +Q KKE   ++   F +++ ++ +A +  TD VC
Sbjct: 64  LNLAQKKRRLKGQIPEIKQTLEILKYMQKKKESTNSMETRFLLADNLYCKASVPPTDKVC 123

Query: 128 LWLGANVMLEYSCD------EKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDV 181
           LWLGANVMLEY  D      EKNL  A  +L+ L  DL FLRDQ T T+V +ARVYNWDV
Sbjct: 124 LWLGANVMLEYDIDEAQALLEKNLSTATKNLDSLEEDLDFLRDQFTTTEVNMARVYNWDV 183

Query: 182 HQR 184
            +R
Sbjct: 184 KRR 186

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.

Mus musculus (taxid: 10090)

>sp|Q5RCG9|PFD3_PONAB Prefoldin subunit 3 OS=Pongo abelii GN=VBP1 PE=2 SV=1

 Score =  150 bits (378), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 80/191 (41%), Positives = 117/191 (61%), Gaps = 15/191 (7%)

Query: 4   ASAETASSSSEIATAAASPTTERR---GIPAAQFVEDVQTFLSQLDLDV-NSALAFLQER 59
           A+ + +    E+AT        RR   GIP A FVEDV +F+ Q   +  ++ L  L E+
Sbjct: 2   AAVKDSCGKGEMATGNG-----RRLHLGIPEAVFVEDVDSFMKQPGNETADTVLKKLDEQ 56

Query: 60  LQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRAR 119
            Q+YK +E+ L  ++R L+ +IP+I++ L+I+  +Q KKE   ++   F +++ ++ +A 
Sbjct: 57  YQKYKFMELNLAQKKRRLKGQIPEIKQTLEILKYMQKKKESTNSMETRFLLADNLYCKAS 116

Query: 120 IEDTDSVCLWLGANVMLEYSCD------EKNLENAKASLEVLIADLQFLRDQVTITQVTV 173
           +  TD VCLWLGANVMLEY  D      EKNL  A  +L+ L  DL FLRDQ T T+V +
Sbjct: 117 VPPTDKVCLWLGANVMLEYDIDEAQALLEKNLSTATKNLDSLEEDLDFLRDQFTTTEVNM 176

Query: 174 ARVYNWDVHQR 184
           ARVYNWDV +R
Sbjct: 177 ARVYNWDVKRR 187

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.

Pongo abelii (taxid: 9601)

>sp|P61758|PFD3_HUMAN Prefoldin subunit 3 OS=Homo sapiens GN=VBP1 PE=1 SV=3

 Score =  149 bits (375), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 79/191 (41%), Positives = 117/191 (61%), Gaps = 15/191 (7%)

Query: 4   ASAETASSSSEIATAAASPTTERR---GIPAAQFVEDVQTFLSQLDLDV-NSALAFLQER 59
           A+ + +    E+AT        RR   GIP A FVEDV +F+ Q   +  ++ L  L E+
Sbjct: 2   AAVKDSCGKGEMATGNG-----RRLHLGIPEAVFVEDVDSFMKQPGNETADTVLKKLDEQ 56

Query: 60  LQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRAR 119
            Q+YK +E+ L  ++R L+ +IP+I++ L+I+  +Q KKE   ++   F +++ ++ +A 
Sbjct: 57  YQKYKFMELNLAQKKRRLKGQIPEIKQTLEILKYMQKKKESTNSMETRFLLADNLYCKAS 116

Query: 120 IEDTDSVCLWLGANVMLEYSCD------EKNLENAKASLEVLIADLQFLRDQVTITQVTV 173
           +  TD +CLWLGANVMLEY  D      EKNL  A  +L+ L  DL FLRDQ T T+V +
Sbjct: 117 VPPTDKMCLWLGANVMLEYDIDEAQALLEKNLSTATKNLDSLEEDLDFLRDQFTTTEVNM 176

Query: 174 ARVYNWDVHQR 184
           ARVYNWDV +R
Sbjct: 177 ARVYNWDVKRR 187

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.

Homo sapiens (taxid: 9606)

>sp|Q2TBX2|PFD3_BOVIN Prefoldin subunit 3 OS=Bos taurus GN=VBP1 PE=2 SV=1

 Score =  144 bits (363), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 79/186 (42%), Positives = 111/186 (59%), Gaps = 10/186 (5%)

Query: 9   ASSSSEIATAAASPTTERR---GIPAAQFVEDVQTFLSQLDLDV-NSALAFLQERLQQYK 64
           A+S         +    RR   GIP A FVEDV +F+ Q   +  +  L  L E+ Q+YK
Sbjct: 2   AASKDGCGVGEVAAGNGRRLHLGIPEAVFVEDVDSFMKQPGNETADIVLKKLDEQYQKYK 61

Query: 65  LVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTD 124
            +E+ L  ++R L+ +IP+I++ L+I+   Q KKE   +L   F +++ ++ +A +  TD
Sbjct: 62  FMELNLAQKKRRLKGQIPEIKQTLEILKYKQKKKESTSSLETRFLLADNLYCKASVPPTD 121

Query: 125 SVCLWLGANVMLEYSCD------EKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYN 178
            VCLWLGANVMLEY  D      EKNL  A  +L+ L  DL FLRDQ T T+V +ARVYN
Sbjct: 122 KVCLWLGANVMLEYDIDEAQALLEKNLLTATKNLDSLEEDLDFLRDQFTTTEVNMARVYN 181

Query: 179 WDVHQR 184
           WDV +R
Sbjct: 182 WDVKRR 187

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.

Bos taurus (taxid: 9913)

>sp|O18054|PFD3_CAEEL Probable prefoldin subunit 3 OS=Caenorhabditis elegans GN=pfd-3 PE=3 SV=1

 Score =  121 bits (304), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 60/175 (34%), Positives = 108/175 (61%), Gaps = 10/175 (5%)

Query: 27  RGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEK 86
           RGIP ++ +EDV+++L++  L +  A   L+E+  +YK VE  +LAQ+  +  KIP+ E 
Sbjct: 11  RGIPKSELIEDVESWLTKEKLSIEEAEVVLREKYGKYKYVESSMLAQKVRMSEKIPEFEN 70

Query: 87  CLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCD----- 141
            L I+ TL AK+   E+    F +S+ ++++A ++  + V +WLGANVM+EY  +     
Sbjct: 71  SLSIIDTLIAKRAADESFETTFLLSDDVYTKATVQKPEKVSIWLGANVMVEYDLENARKL 130

Query: 142 -EKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQRRIRQAAAAAAN 195
            +KN  + +  ++ L  +L +++DQ+T T+V ++ + N+ V++RR    AA A N
Sbjct: 131 LDKNRGSVQKVVDELTNELSYIKDQITTTEVNMSHIVNFGVNKRR----AALAVN 181

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.

Caenorhabditis elegans (taxid: 6239)

>sp|Q54LS2|PFD3_DICDI Probable prefoldin subunit 3 OS=Dictyostelium discoideum GN=pfdn3 PE=3 SV=1

 Score =  117 bits (293), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 64/164 (39%), Positives = 95/164 (57%), Gaps = 10/164 (6%)

Query: 28  GIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKC 87
            IP   F+ +V+ F+   D DV +    LQE  Q+YK  E KL      L  +   +++ 
Sbjct: 23  NIPMVTFISNVEEFVK--DKDVENVFKQLQEAYQKYKFFESKLSNNISMLTQRSKQLQES 80

Query: 88  LDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDE----- 142
           LDIV  ++ K    E+ +  +E+SEG++S A++ +  S+ LWLGANVMLEYS +E     
Sbjct: 81  LDIVDHVENK--SNESFSVQYELSEGVYSSAQVNEPKSIYLWLGANVMLEYSFEEAREVL 138

Query: 143 -KNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQRR 185
            KN +     L   I DL F++DQ+T T V V+RVYN+D+ Q+R
Sbjct: 139 RKNKDTVDRQLSESIQDLGFVKDQITTTDVNVSRVYNYDIIQKR 182

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.

Dictyostelium discoideum (taxid: 44689)

>sp|Q9VGP6|PFD3_DROME Probable prefoldin subunit 3 OS=Drosophila melanogaster GN=CG6719 PE=3 SV=2

 Score =  116 bits (290), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 64/165 (38%), Positives = 103/165 (62%), Gaps = 10/165 (6%)

Query: 28  GIPAAQFVEDVQTFLSQL-DLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEK 86
           GIP A F+E++ TF+SQ  + +    L  L E+  +Y+ +   L A++R L+++IPD+E+
Sbjct: 13  GIPEAVFLEEIDTFMSQPENENCEKVLQRLDEQHGKYRFMACNLEARRRKLKSQIPDLER 72

Query: 87  CLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDE---- 142
            L++V  L+ + E  E     F +S+ +F +  +  T +V LWLGA+VMLEY  DE    
Sbjct: 73  SLEMVNVLRKEDEERET---QFLLSDQVFIKTLVPPTKTVYLWLGASVMLEYPLDEAEAL 129

Query: 143 --KNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQRR 185
             +N+ +A  +L+ +  D  FLRDQ+T T+V +ARVYNW V +R+
Sbjct: 130 LNQNITSAVGNLKSVEHDQDFLRDQITTTEVNMARVYNWGVKKRQ 174

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.

Drosophila melanogaster (taxid: 7227)

>sp|P48363|PFD3_YEAST Prefoldin subunit 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PAC10 PE=1 SV=1

 Score =  110 bits (274), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 63/185 (34%), Positives = 104/185 (56%), Gaps = 17/185 (9%)

Query: 27  RGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEK 86
           RGIP A F+E+V   +     D        QERL +YK ++   LA  + L+ +IPD+E 
Sbjct: 13  RGIPQAPFIENVNEIIKDPS-DFELCFNKFQERLSKYKFMQESKLATIKQLKTRIPDLEN 71

Query: 87  CLDIVATLQAKKEGG----EALTADFEVSEGIFSRARIEDTD-----SVCLWLGANVMLE 137
            L I  +L+   + G    E +   +++++ ++++A+++  +      V LWLGA+VMLE
Sbjct: 72  TLKICQSLRNHSDEGDESDEPILLHYQLNDTLYTKAQVDIPEDRADLKVGLWLGADVMLE 131

Query: 138 YSCDE------KNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQRR-IRQAA 190
           Y  DE      K L +++ SL V   D++FLR+ +T  +V  AR+YNWDV +R+ ++QA 
Sbjct: 132 YPIDEAIELLKKKLADSEQSLTVSTEDVEFLRENITTMEVNCARLYNWDVQRRQDLKQAQ 191

Query: 191 AAAAN 195
               N
Sbjct: 192 EGTKN 196

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q10143|PFD3_SCHPO Probable prefoldin subunit 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC3H8.07c PE=3 SV=1

 Score =  107 bits (267), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 63/166 (37%), Positives = 97/166 (58%), Gaps = 14/166 (8%)

Query: 27  RGIPAAQFVEDVQTFLSQLDLD-VNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIE 85
           RGIP AQF E       +L ++     L   QE + +YK +E  ++ +   L  KIPDI 
Sbjct: 7   RGIPPAQFFE-----FKELSMEEAQGHLEKFQEAIAKYKFMETSVVRRVASLDDKIPDIR 61

Query: 86  KCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDE--- 142
           K L  V  L+ ++  G++ T  +E+++ + ++A +E  D+V LWLGANVMLEY+ +E   
Sbjct: 62  KTLQSVQFLKERQ--GDSFTVTYELNDTLNAKAEVEAKDNVYLWLGANVMLEYTVEEAEA 119

Query: 143 ---KNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQRR 185
              + L +A+ +L+    DL+FLR QVT  +V  ARVYN+ V  R+
Sbjct: 120 LLTQKLNSAEETLKACKEDLEFLRAQVTTMEVNTARVYNYTVLLRK 165

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	197
225432002	188	PREDICTED: probable prefoldin subunit 3	0.903	0.946	0.821	8e-83
255556430	185	prefoldin subunit, putative [Ricinus com	0.873	0.929	0.842	7e-82
115489090	196	Os12g0562900 [Oryza sativa Japonica Grou	0.842	0.846	0.854	9e-80
351727893	195	uncharacterized protein LOC100527836 [Gl	0.878	0.887	0.815	7e-79
414878111	188	TPA: prefoldin subunit 3 [Zea mays]	0.883	0.925	0.802	1e-78
226504476	188	LOC100282989 [Zea mays] gi|195626666|gb|	0.873	0.914	0.808	1e-78
449432928	194	PREDICTED: probable prefoldin subunit 3-	0.862	0.876	0.820	2e-78
242083808	191	hypothetical protein SORBIDRAFT_08g01827	0.837	0.863	0.847	3e-78
195635051	188	prefoldin subunit 3 [Zea mays]	0.873	0.914	0.803	3e-78
388508614	192	unknown [Lotus japonicus]	0.878	0.901	0.798	3e-78

>gi|225432002|ref|XP_002279358.1| PREDICTED: probable prefoldin subunit 3 [Vitis vinifera]

 Score =  311 bits (797), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 152/185 (82%), Positives = 166/185 (89%), Gaps = 7/185 (3%)

Query: 15  IATAAASP-TTERRGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQ 73
           +A++++SP  TERRGIP A FV DVQT+L++  LD NSALAFLQERLQQYKLVEMKLLAQ
Sbjct: 1   MASSSSSPAVTERRGIPGASFVHDVQTYLTESGLDCNSALAFLQERLQQYKLVEMKLLAQ 60

Query: 74  QRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGAN 133
           QRDLQAKIPDIEKCLD+VATL+AKK  GE L ADFEVSEGI+SRARIEDTDSVCLWLGAN
Sbjct: 61  QRDLQAKIPDIEKCLDVVATLEAKKGTGEPLIADFEVSEGIYSRARIEDTDSVCLWLGAN 120

Query: 134 VMLEYSCDE------KNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQRRIR 187
           VMLEYSC+E      KNLENAKASLEVL+ DLQFLRDQVTITQVT+ARVYNWDVHQRRIR
Sbjct: 121 VMLEYSCEEATALLQKNLENAKASLEVLVTDLQFLRDQVTITQVTIARVYNWDVHQRRIR 180

Query: 188 QAAAA 192
           QAAAA
Sbjct: 181 QAAAA 185

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556430|ref|XP_002519249.1| prefoldin subunit, putative [Ricinus communis] gi|223541564|gb|EEF43113.1| prefoldin subunit, putative [Ricinus communis]

 Score =  308 bits (789), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 150/178 (84%), Positives = 161/178 (90%), Gaps = 6/178 (3%)

Query: 19  AASPTTERRGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQ 78
           A+   TERRGIP AQFVEDV+T+LSQ  LDVNS L+FLQERLQQYKLVEMKLLAQQRDLQ
Sbjct: 2   ASVSATERRGIPGAQFVEDVETYLSQSGLDVNSGLSFLQERLQQYKLVEMKLLAQQRDLQ 61

Query: 79  AKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEY 138
           AKIPDIEKCLD+VATLQAKK  GEAL ADFEVSEGI+SRA IEDTDSVCLWLGANVMLEY
Sbjct: 62  AKIPDIEKCLDVVATLQAKKGTGEALLADFEVSEGIYSRACIEDTDSVCLWLGANVMLEY 121

Query: 139 SCDE------KNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQRRIRQAA 190
           SC+E      KNL+NAKASLEVL+ADLQFLRDQVTITQVT+ARVYNWDVHQRR+RQAA
Sbjct: 122 SCEEATALLQKNLDNAKASLEVLVADLQFLRDQVTITQVTIARVYNWDVHQRRMRQAA 179

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115489090|ref|NP_001067032.1| Os12g0562900 [Oryza sativa Japonica Group] gi|77556159|gb|ABA98955.1| prefoldin subunit 3, putative, expressed [Oryza sativa Japonica Group] gi|113649539|dbj|BAF30051.1| Os12g0562900 [Oryza sativa Japonica Group] gi|215701045|dbj|BAG92469.1| unnamed protein product [Oryza sativa Japonica Group] gi|215765550|dbj|BAG87247.1| unnamed protein product [Oryza sativa Japonica Group] gi|222617303|gb|EEE53435.1| hypothetical protein OsJ_36518 [Oryza sativa Japonica Group]

 Score =  301 bits (771), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 147/172 (85%), Positives = 157/172 (91%), Gaps = 6/172 (3%)

Query: 24  TERRGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPD 83
           TERRGIPAA FVEDV+T+L Q  LDVNS LAFLQERLQQYK+VEMKLLAQQRDLQAKIPD
Sbjct: 21  TERRGIPAASFVEDVETYLRQAGLDVNSGLAFLQERLQQYKIVEMKLLAQQRDLQAKIPD 80

Query: 84  IEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDE- 142
           IEKCLDIVATLQAKK  GEALTADFE+SEGI+SRA+IEDTDSVCLWLGANVMLEYSCDE 
Sbjct: 81  IEKCLDIVATLQAKKALGEALTADFELSEGIYSRAKIEDTDSVCLWLGANVMLEYSCDEA 140

Query: 143 -----KNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQRRIRQA 189
                KNLENAKASLEVL+ADLQFLRDQ TITQVT+ARV+NWDVHQRR +QA
Sbjct: 141 NALLKKNLENAKASLEVLVADLQFLRDQQTITQVTIARVFNWDVHQRRSKQA 192

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727893|ref|NP_001238200.1| uncharacterized protein LOC100527836 [Glycine max] gi|255633340|gb|ACU17027.1| unknown [Glycine max]

 Score =  298 bits (764), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 146/179 (81%), Positives = 160/179 (89%), Gaps = 6/179 (3%)

Query: 24  TERRGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPD 83
           TERRGIP AQFVEDVQT+L+Q  LDV SALAFLQERLQQYK+VEMKLLAQQRDLQAKIPD
Sbjct: 17  TERRGIPGAQFVEDVQTYLTQSGLDVGSALAFLQERLQQYKVVEMKLLAQQRDLQAKIPD 76

Query: 84  IEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDE- 142
           IEKCLD+VATL+AKK  GE L ADFEVSEGI+S+ARIE+TDSVCLWLGANVMLEYS +E 
Sbjct: 77  IEKCLDVVATLKAKKGTGEELIADFEVSEGIYSQARIEETDSVCLWLGANVMLEYSLEEA 136

Query: 143 -----KNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQRRIRQAAAAAANE 196
                KNL+NA+ASLEVLIADLQFLRDQVTITQVT+ARVYNWDVHQRRI+QA A  A +
Sbjct: 137 TGLLQKNLDNARASLEVLIADLQFLRDQVTITQVTIARVYNWDVHQRRIQQAVATTAQD 195

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|414878111|tpg|DAA55242.1| TPA: prefoldin subunit 3 [Zea mays]

 Score =  298 bits (762), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 146/182 (80%), Positives = 160/182 (87%), Gaps = 8/182 (4%)

Query: 16  ATAAASP--TTERRGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQ 73
           A AA++P    ERRGIPAA FVEDV+ +L Q+ LDVNSALAFLQERLQQYK+VEMKLLAQ
Sbjct: 3   AAAASTPQGVAERRGIPAAAFVEDVEAYLRQVGLDVNSALAFLQERLQQYKIVEMKLLAQ 62

Query: 74  QRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGAN 133
           QRDLQAKIPDIEKCLDIV TLQAKK+ GEAL ADFE+SEGI+SRA+IEDTDSVCLWLGAN
Sbjct: 63  QRDLQAKIPDIEKCLDIVTTLQAKKDLGEALIADFELSEGIYSRAKIEDTDSVCLWLGAN 122

Query: 134 VMLEYSCDE------KNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQRRIR 187
           VMLEYSCDE      KNLENAKASLEVL+ADL FLRDQ TITQVT+ARV+NWDVH RR +
Sbjct: 123 VMLEYSCDEANALLKKNLENAKASLEVLVADLHFLRDQQTITQVTIARVFNWDVHHRRSK 182

Query: 188 QA 189
           QA
Sbjct: 183 QA 184

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226504476|ref|NP_001149365.1| LOC100282989 [Zea mays] gi|195626666|gb|ACG35163.1| prefoldin subunit 3 [Zea mays]

 Score =  297 bits (761), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 148/183 (80%), Positives = 161/183 (87%), Gaps = 11/183 (6%)

Query: 18  AAASPTT-----ERRGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLA 72
           AAAS +T     ERRGIPAA FVEDV+ +L Q+ LDVNSALAFLQERLQQYK+VEMKLLA
Sbjct: 2   AAASVSTPQGVAERRGIPAAAFVEDVEAYLRQVGLDVNSALAFLQERLQQYKIVEMKLLA 61

Query: 73  QQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGA 132
           QQRDLQAKIPDIEKCLDIVATLQAKK+ GEAL ADFE+SEGI+SRA+IEDTDSVCLWLGA
Sbjct: 62  QQRDLQAKIPDIEKCLDIVATLQAKKDLGEALIADFELSEGIYSRAKIEDTDSVCLWLGA 121

Query: 133 NVMLEYSCDE------KNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQRRI 186
           NVMLEYSCDE      KNLENAKASLEVL+ADL FLRDQ TITQVT+ARV+NWDVH RR 
Sbjct: 122 NVMLEYSCDEANALLKKNLENAKASLEVLVADLHFLRDQQTITQVTIARVFNWDVHHRRS 181

Query: 187 RQA 189
           +QA
Sbjct: 182 KQA 184

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432928|ref|XP_004134250.1| PREDICTED: probable prefoldin subunit 3-like [Cucumis sativus]

 Score =  296 bits (759), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 146/178 (82%), Positives = 161/178 (90%), Gaps = 8/178 (4%)

Query: 23  TTERRGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIP 82
            T+RRGIPAAQFVEDV+T+LSQL LDV SALAFLQERLQQYKLVEMKLLAQQRDLQAKIP
Sbjct: 13  VTDRRGIPAAQFVEDVRTYLSQLQLDVQSALAFLQERLQQYKLVEMKLLAQQRDLQAKIP 72

Query: 83  DIEKCLDIVATLQAKKEG--GEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSC 140
           DI+KCLDIVATLQAKKE   GE L ADFE+SEGI+SRARIE+TDSVCLWLGANVML+YS 
Sbjct: 73  DIKKCLDIVATLQAKKEAATGEPLVADFEISEGIYSRARIEETDSVCLWLGANVMLDYSY 132

Query: 141 DE------KNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQRRIRQAAAA 192
           +E      KNL+NAKASLEVL+ADLQFLRDQVTITQVT+ARVYNWDVHQRR++ A A+
Sbjct: 133 EEAITLLQKNLDNAKASLEVLVADLQFLRDQVTITQVTIARVYNWDVHQRRVQLAGAS 190

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242083808|ref|XP_002442329.1| hypothetical protein SORBIDRAFT_08g018270 [Sorghum bicolor] gi|241943022|gb|EES16167.1| hypothetical protein SORBIDRAFT_08g018270 [Sorghum bicolor]

 Score =  296 bits (758), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 145/171 (84%), Positives = 156/171 (91%), Gaps = 6/171 (3%)

Query: 25  ERRGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDI 84
           ERRGIPAA FVEDV+ +L Q  LDVNSALAFLQERLQQYK+VEMKLLAQQRDLQAKIPDI
Sbjct: 17  ERRGIPAAAFVEDVEAYLRQAGLDVNSALAFLQERLQQYKIVEMKLLAQQRDLQAKIPDI 76

Query: 85  EKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDE-- 142
           EKCLDIVATLQAKK+ GEAL ADFE+SEGI+SRA+IEDTDSVCLWLGANVMLEYSCDE  
Sbjct: 77  EKCLDIVATLQAKKDLGEALIADFELSEGIYSRAKIEDTDSVCLWLGANVMLEYSCDEAN 136

Query: 143 ----KNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQRRIRQA 189
               KNLENAKASLEVL+ADLQFLRDQ TITQVT+ARV+NWDVHQRR +QA
Sbjct: 137 ALLKKNLENAKASLEVLVADLQFLRDQQTITQVTIARVFNWDVHQRRSKQA 187

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|195635051|gb|ACG36994.1| prefoldin subunit 3 [Zea mays]

 Score =  296 bits (758), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 147/183 (80%), Positives = 161/183 (87%), Gaps = 11/183 (6%)

Query: 18  AAASPTT-----ERRGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLA 72
           AAAS +T     ERRGIPAA FVEDV+ +L Q+ LDVNSALAFLQERLQQYK+VEMKLLA
Sbjct: 2   AAASVSTPQGVAERRGIPAAAFVEDVEAYLRQVGLDVNSALAFLQERLQQYKIVEMKLLA 61

Query: 73  QQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGA 132
           QQRDLQAKIPDIEKCLDIVATLQAKK+ GEAL ADFE+SEGI+SRA+IEDTDSVCLWLGA
Sbjct: 62  QQRDLQAKIPDIEKCLDIVATLQAKKDLGEALIADFELSEGIYSRAKIEDTDSVCLWLGA 121

Query: 133 NVMLEYSCDE------KNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQRRI 186
           NVMLEYSCDE      KNLENAKASLEVL+ADL FLRDQ TITQVT++RV+NWDVH RR 
Sbjct: 122 NVMLEYSCDEANALLKKNLENAKASLEVLVADLHFLRDQQTITQVTISRVFNWDVHHRRS 181

Query: 187 RQA 189
           +QA
Sbjct: 182 KQA 184

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388508614|gb|AFK42373.1| unknown [Lotus japonicus]

 Score =  296 bits (758), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 143/179 (79%), Positives = 158/179 (88%), Gaps = 6/179 (3%)

Query: 24  TERRGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPD 83
           TERRGIPAAQFVEDVQT+L+QL LDVNS LAFLQERLQQY+LVEMKLLAQQRDLQAKIPD
Sbjct: 14  TERRGIPAAQFVEDVQTYLTQLGLDVNSTLAFLQERLQQYRLVEMKLLAQQRDLQAKIPD 73

Query: 84  IEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDE- 142
           IEKCLD+V TLQAKK  GE L  DFEVSEGI+SRARI++TDSVCLWLGANVMLEYS +E 
Sbjct: 74  IEKCLDVVGTLQAKKGTGEELITDFEVSEGIYSRARIDETDSVCLWLGANVMLEYSLEEA 133

Query: 143 -----KNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQRRIRQAAAAAANE 196
                KNL+NAKASLEVL+ADL FLRDQVTITQVT+ARVYNWDVH RR++Q A+  A +
Sbjct: 134 TSLLHKNLDNAKASLEVLVADLLFLRDQVTITQVTIARVYNWDVHNRRLQQVASTTAQD 192

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	197
TAIR|locus:2157819	195	PFD3 "prefoldin 3" [Arabidopsi	0.827	0.835	0.816	1.3e-68
UNIPROTKB|K7GNY9	197	VBP1 "Uncharacterized protein"	0.796	0.796	0.457	1.1e-32
UNIPROTKB|F6XQ49	197	VBP1 "Uncharacterized protein"	0.796	0.796	0.457	1.8e-32
MGI|MGI:1333804	196	Vbp1 "von Hippel-Lindau bindin	0.796	0.801	0.451	1.8e-32
UNIPROTKB|P61758	197	VBP1 "Prefoldin subunit 3" [Ho	0.796	0.796	0.445	3.7e-32
UNIPROTKB|G5E5K1	197	VBP1 "Prefoldin subunit 3" [Bo	0.796	0.796	0.457	4.7e-32
UNIPROTKB|F1RZQ7	197	VBP1 "Uncharacterized protein"	0.796	0.796	0.451	4.7e-32
UNIPROTKB|E1BXR1	200	VBP1 "Uncharacterized protein"	0.796	0.785	0.451	6e-32
UNIPROTKB|Q2TBX2	197	VBP1 "Prefoldin subunit 3" [Bo	0.796	0.796	0.457	1.3e-31
ZFIN|ZDB-GENE-050522-494	236	vbp1 "von Hippel-Lindau bindin	0.796	0.665	0.451	4.2e-31

TAIR|locus:2157819 PFD3 "prefoldin 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 696 (250.1 bits), Expect = 1.3e-68, P = 1.3e-68
 Identities = 138/169 (81%), Positives = 154/169 (91%)

Query:    26 RRGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIE 85
             RRGIPAA+F++DV+T+LSQ  LD NSALAF QERLQQYK+VEMKLLAQQRDLQAKIPDIE
Sbjct:    16 RRGIPAAKFIQDVETYLSQSGLDPNSALAFHQERLQQYKVVEMKLLAQQRDLQAKIPDIE 75

Query:    86 KCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDE--- 142
             KCL++VATL+AKK  GEAL ADFEVSEGI+SRA IEDTDSVCLWLGANVMLEYSC+E   
Sbjct:    76 KCLEVVATLEAKKGTGEALLADFEVSEGIYSRACIEDTDSVCLWLGANVMLEYSCEEASA 135

Query:   143 ---KNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQRRIRQ 188
                 NLENAKASLEVL+ADLQFLRDQVT+TQVT+ARVYNWDVHQRR++Q
Sbjct:   136 LLKNNLENAKASLEVLVADLQFLRDQVTVTQVTIARVYNWDVHQRRVKQ 184

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0016272 "prefoldin complex" evidence=IEA;ISS

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

UNIPROTKB|K7GNY9 VBP1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
 Identities = 75/164 (45%), Positives = 107/164 (65%)

Query:    28 GIPAAQFVEDVQTFLSQLDLDV-NSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEK 86
             GIP A FVEDV +F+ Q   +  ++ L  L E+ Q+YK +E+ L  ++R L+ +IP+I++
Sbjct:    24 GIPEAVFVEDVDSFMKQPGNETADTVLKKLDEQYQKYKFMELNLAQKKRRLKGQIPEIKQ 83

Query:    87 CLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDE---- 142
              L+I+  +Q KKE   +L   F +++ ++ +A +  TD VCLWLGANVMLEY  DE    
Sbjct:    84 TLEILKYMQKKKESTSSLETRFLLADNLYCKASVPPTDKVCLWLGANVMLEYDIDEAQAL 143

Query:   143 --KNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQR 184
               KNL  A  +L+ L  DL FLRDQ T T+V +ARVYNWDV +R
Sbjct:   144 LEKNLSTATKNLDSLEEDLDFLRDQFTTTEVNMARVYNWDVKRR 187

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

UNIPROTKB|F6XQ49 VBP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
 Identities = 75/164 (45%), Positives = 107/164 (65%)

Query:    28 GIPAAQFVEDVQTFLSQLDLDV-NSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEK 86
             GIP A FVEDV +F+ Q   +  ++ L  L E+ Q+YK +E+ L  ++R L+ +IP+I++
Sbjct:    24 GIPEAVFVEDVDSFMKQPGNETADTVLKKLDEQYQKYKFMELNLAQKKRRLKGQIPEIKQ 83

Query:    87 CLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDE---- 142
              L+I+  +Q KKE   +L   F +++ ++ +A +  TD VCLWLGANVMLEY  DE    
Sbjct:    84 TLEILKYMQKKKESTGSLETRFLLADNLYCKASVPPTDKVCLWLGANVMLEYDIDEAQAL 143

Query:   143 --KNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQR 184
               KNL  A  +L+ L  DL FLRDQ T T+V +ARVYNWDV +R
Sbjct:   144 LEKNLSTATKNLDSLEEDLDFLRDQFTTTEVNMARVYNWDVKRR 187

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

MGI|MGI:1333804 Vbp1 "von Hippel-Lindau binding protein 1" [Mus musculus (taxid:10090)]

 Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
 Identities = 74/164 (45%), Positives = 107/164 (65%)

Query:    28 GIPAAQFVEDVQTFLSQLDLDV-NSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEK 86
             GIP A FVEDV +F+ Q   +  ++ L  L E+ Q+YK +E+ L  ++R L+ +IP+I++
Sbjct:    23 GIPEAVFVEDVDSFMKQPGNETADTVLKKLDEQYQKYKFMELNLAQKKRRLKGQIPEIKQ 82

Query:    87 CLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDE---- 142
              L+I+  +Q KKE   ++   F +++ ++ +A +  TD VCLWLGANVMLEY  DE    
Sbjct:    83 TLEILKYMQKKKESTNSMETRFLLADNLYCKASVPPTDKVCLWLGANVMLEYDIDEAQAL 142

Query:   143 --KNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQR 184
               KNL  A  +L+ L  DL FLRDQ T T+V +ARVYNWDV +R
Sbjct:   143 LEKNLSTATKNLDSLEEDLDFLRDQFTTTEVNMARVYNWDVKRR 186

GO:0005634 "nucleus" evidence=TAS

GO:0005737 "cytoplasm" evidence=TAS

GO:0006457 "protein folding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

UNIPROTKB|P61758 VBP1 "Prefoldin subunit 3" [Homo sapiens (taxid:9606)]

 Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
 Identities = 73/164 (44%), Positives = 107/164 (65%)

Query:    28 GIPAAQFVEDVQTFLSQLDLDV-NSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEK 86
             GIP A FVEDV +F+ Q   +  ++ L  L E+ Q+YK +E+ L  ++R L+ +IP+I++
Sbjct:    24 GIPEAVFVEDVDSFMKQPGNETADTVLKKLDEQYQKYKFMELNLAQKKRRLKGQIPEIKQ 83

Query:    87 CLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDE---- 142
              L+I+  +Q KKE   ++   F +++ ++ +A +  TD +CLWLGANVMLEY  DE    
Sbjct:    84 TLEILKYMQKKKESTNSMETRFLLADNLYCKASVPPTDKMCLWLGANVMLEYDIDEAQAL 143

Query:   143 --KNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQR 184
               KNL  A  +L+ L  DL FLRDQ T T+V +ARVYNWDV +R
Sbjct:   144 LEKNLSTATKNLDSLEEDLDFLRDQFTTTEVNMARVYNWDVKRR 187

GO:0016272 "prefoldin complex" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006457 "protein folding" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0051084 "'de novo' posttranslational protein folding" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|G5E5K1 VBP1 "Prefoldin subunit 3" [Bos taurus (taxid:9913)]

 Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
 Identities = 75/164 (45%), Positives = 106/164 (64%)

Query:    28 GIPAAQFVEDVQTFLSQLDLDV-NSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEK 86
             GIP A FVEDV +F+ Q   +  +  L  L E+ Q+YK +E+ L  ++R L+ +IP+I++
Sbjct:    24 GIPEAVFVEDVDSFMKQPGNETADIVLKKLDEQYQKYKFMELNLAQKKRRLKGQIPEIKQ 83

Query:    87 CLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDE---- 142
              L+I+  +Q KKE   +L   F +++ ++ +A +  TD VCLWLGANVMLEY  DE    
Sbjct:    84 TLEILKYMQKKKESTSSLETRFLLADNLYCKASVPPTDKVCLWLGANVMLEYDIDEAQAL 143

Query:   143 --KNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQR 184
               KNL  A  +L+ L  DL FLRDQ T T+V +ARVYNWDV +R
Sbjct:   144 LEKNLLTATKNLDSLEEDLDFLRDQFTTTEVNMARVYNWDVKRR 187

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

UNIPROTKB|F1RZQ7 VBP1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
 Identities = 74/164 (45%), Positives = 106/164 (64%)

Query:    28 GIPAAQFVEDVQTFLSQLDLDV-NSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEK 86
             GIP A FVEDV +F+ Q   +  ++ L  L E+ Q+YK +E+ L  ++R L+ +IP+I++
Sbjct:    24 GIPEAVFVEDVDSFMKQPGNETADTVLKKLDEQYQKYKFMELNLAQKKRRLKGQIPEIKQ 83

Query:    87 CLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDE---- 142
              L+I+  +Q KKE   +L   F +++ ++ +A +  TD VCLWLGANVMLEY  DE    
Sbjct:    84 TLEILKYMQKKKESTSSLETRFLLADNLYCKASVPPTDKVCLWLGANVMLEYDIDEAQAL 143

Query:   143 --KNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQR 184
               KNL  A  +L+ L  DL FLRDQ T T+  +ARVYNWDV +R
Sbjct:   144 LEKNLSTATKNLDSLEEDLDFLRDQFTTTEQNMARVYNWDVKRR 187

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

UNIPROTKB|E1BXR1 VBP1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
 Identities = 74/164 (45%), Positives = 105/164 (64%)

Query:    28 GIPAAQFVEDVQTFLSQLDLDV-NSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEK 86
             GIP A FVEDV +F+ Q   +  +  L  L E+ Q+YK +E+ L  ++R L+ +IP+I++
Sbjct:    27 GIPEAVFVEDVDSFMKQPGNETADVVLKKLDEQYQKYKFLELNLAQKKRRLKGQIPEIKQ 86

Query:    87 CLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDE---- 142
              L+I+  +Q KKE    +   F +++ ++ +A +  TD VCLWLGANVMLEY  DE    
Sbjct:    87 TLEILKHMQKKKESTNPMETRFLLADNLYCKASVPPTDKVCLWLGANVMLEYDIDEAQAL 146

Query:   143 --KNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQR 184
               KNL  A  +L+ L  DL FLRDQ T T+V +ARVYNWDV +R
Sbjct:   147 LEKNLSTATRNLDSLEEDLDFLRDQFTTTEVNMARVYNWDVKRR 190

GO:0006457 "protein folding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

UNIPROTKB|Q2TBX2 VBP1 "Prefoldin subunit 3" [Bos taurus (taxid:9913)]

 Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
 Identities = 75/164 (45%), Positives = 105/164 (64%)

Query:    28 GIPAAQFVEDVQTFLSQLDLDV-NSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEK 86
             GIP A FVEDV +F+ Q   +  +  L  L E+ Q+YK +E+ L  ++R L+ +IP+I++
Sbjct:    24 GIPEAVFVEDVDSFMKQPGNETADIVLKKLDEQYQKYKFMELNLAQKKRRLKGQIPEIKQ 83

Query:    87 CLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDE---- 142
              L+I+   Q KKE   +L   F +++ ++ +A +  TD VCLWLGANVMLEY  DE    
Sbjct:    84 TLEILKYKQKKKESTSSLETRFLLADNLYCKASVPPTDKVCLWLGANVMLEYDIDEAQAL 143

Query:   143 --KNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQR 184
               KNL  A  +L+ L  DL FLRDQ T T+V +ARVYNWDV +R
Sbjct:   144 LEKNLLTATKNLDSLEEDLDFLRDQFTTTEVNMARVYNWDVKRR 187

GO:0051086 "chaperone mediated protein folding independent of cofactor" evidence=TAS

GO:0006457 "protein folding" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0005634 "nucleus" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

ZFIN|ZDB-GENE-050522-494 vbp1 "von Hippel-Lindau binding protein 1" [Danio rerio (taxid:7955)]

 Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
 Identities = 74/164 (45%), Positives = 104/164 (63%)

Query:    28 GIPAAQFVEDVQTFLSQLDLDVNSA-LAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEK 86
             GIP A FVEDV  F+ Q   D   A L  L E+ Q+YK +E+ L  ++  L+++IP I++
Sbjct:    61 GIPEAIFVEDVDAFMKQPGNDTADAVLRKLDEQYQKYKYMELNLGQKKLRLKSQIPQIKQ 120

Query:    87 CLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCD----- 141
              L+I+  +Q KK+  + +   F +++ ++ +A +  TD VCLWLGANVMLEY  D     
Sbjct:   121 TLEILRHMQKKKDTTDPMETHFLLADNVYCKASVPPTDKVCLWLGANVMLEYDIDAAQAL 180

Query:   142 -EKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQR 184
              EKNL  A  +L+ L  DL FLRDQ T T+V +ARVYNWDV +R
Sbjct:   181 LEKNLATASRNLDSLEEDLDFLRDQFTTTEVNMARVYNWDVKRR 224

GO:0006457 "protein folding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P48363	PFD3_YEAST	No assigned EC number	0.3405	0.8527	0.8442	yes	no
O18054	PFD3_CAEEL	No assigned EC number	0.3428	0.8375	0.8918	yes	no
P57741	PFD3_ARATH	No assigned EC number	0.8011	0.8629	0.8717	yes	no
P61758	PFD3_HUMAN	No assigned EC number	0.4136	0.8934	0.8934	yes	no
P61759	PFD3_MOUSE	No assigned EC number	0.4262	0.8934	0.8979	yes	no
Q2TBX2	PFD3_BOVIN	No assigned EC number	0.4247	0.8934	0.8934	yes	no
Q5RCG9	PFD3_PONAB	No assigned EC number	0.4188	0.8934	0.8934	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	197
pfam02996	120	pfam02996, Prefoldin, Prefoldin subunit	9e-24
cd00584	129	cd00584, Prefoldin_alpha, Prefoldin alpha subunit;	9e-16
cd00890	129	cd00890, Prefoldin, Prefoldin is a hexameric molec	9e-12
PRK03947	140	PRK03947, PRK03947, prefoldin subunit alpha; Revie	1e-04

>gnl|CDD|202504 pfam02996, Prefoldin, Prefoldin subunit

 Score = 90.4 bits (225), Expect = 9e-24
 Identities = 37/123 (30%), Positives = 61/123 (49%), Gaps = 9/123 (7%)

Query: 63  YKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIED 122
            K     L A+   L+  I ++EK L+ + TL+ + EG E L     +  G+F +  + D
Sbjct: 1   LKQEIESLQAELARLREAIEELEKTLETLKTLKKEDEGKEVL---VPLGAGLFVKGEVID 57

Query: 123 TDSVCLWLGANVMLEYSCDE------KNLENAKASLEVLIADLQFLRDQVTITQVTVARV 176
           TD V + LGA   +E S +E      K +E  +  LE L  +L+ L+DQ+T  +  + +V
Sbjct: 58  TDKVLVDLGAGYYVEKSLEEAIEFLKKRIEELEKQLEKLEEELEKLKDQITTLEANLQQV 117

Query: 177 YNW 179
              
Sbjct: 118 QQK 120

This family comprises of several prefoldin subunits. The biogenesis of the cytoskeletal proteins actin and tubulin involves interaction of nascent chains of each of the two proteins with the oligomeric protein prefoldin (PFD) and their subsequent transfer to the cytosolic chaperonin CCT (chaperonin containing TCP-1). Electron microscopy shows that eukaryotic PFD, which has a similar structure to its archaeal counterpart, interacts with unfolded actin along the tips of its projecting arms. In its PFD-bound state, actin seems to acquire a conformation similar to that adopted when it is bound to CCT. Length = 120

>gnl|CDD|238327 cd00584, Prefoldin_alpha, Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly

 Score = 70.0 bits (172), Expect = 9e-16
 Identities = 33/132 (25%), Positives = 59/132 (44%), Gaps = 9/132 (6%)

Query: 53  LAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSE 112
           L  L  +LQ  +    +L  +   L   I + E+  + + TL+   EG E L     +  
Sbjct: 1   LEQLAAQLQVLQQEIEELQQELARLNEAIAEYEQAKETLETLKKADEGKETL---VPLGA 57

Query: 113 GIFSRARIEDTDSVCLWLGANVMLEYSCDE------KNLENAKASLEVLIADLQFLRDQV 166
           G+F +A+++DTD V + LG    +E   +E      K +E     +E L  +L  L+DQ+
Sbjct: 58  GVFVKAKVKDTDKVLVDLGTGYYVEKDLEEAIEFLDKKIEELTKQIEKLQKELAKLKDQI 117

Query: 167 TITQVTVARVYN 178
              +  +  +  
Sbjct: 118 NTLEAELQELQQ 129

The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils. Length = 129

>gnl|CDD|238453 cd00890, Prefoldin, Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly

 Score = 59.3 bits (144), Expect = 9e-12
 Identities = 38/129 (29%), Positives = 65/129 (50%), Gaps = 9/129 (6%)

Query: 56  LQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIF 115
           L  +LQQ +     L  Q + L+A++ + EK  + + TL+  +E  E L     +  G+F
Sbjct: 4   LAAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLKKAEEEKELLVP---LGAGLF 60

Query: 116 SRARIEDTDSVCLWLGANVMLEYSCDE------KNLENAKASLEVLIADLQFLRDQVTIT 169
            +A ++D D V + LG  V +E S +E      K LE  +  +E L   L+ L+DQ+T  
Sbjct: 61  VKAEVKDDDKVLVDLGTGVYVEKSLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITEL 120

Query: 170 QVTVARVYN 178
           Q  + ++  
Sbjct: 121 QEELQQLQQ 129

The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils. Length = 129

>gnl|CDD|235179 PRK03947, PRK03947, prefoldin subunit alpha; Reviewed

 Score = 40.3 bits (95), Expect = 1e-04
 Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 7/108 (6%)

Query: 56  LQERLQQYKLVEMKLLAQQRD-LQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGI 114
           L  +LQ  +  +++ L QQ + LQA I +++   + +  L++K EG E L     +  G 
Sbjct: 11  LAAQLQALQ-AQIEALQQQLEELQASINELDTAKETLEELKSKGEGKETL---VPIGAGS 66

Query: 115 FSRARIEDTDSVCLWLGANVMLEYSCDE--KNLENAKASLEVLIADLQ 160
           F +A+++D D V + LGA    E   DE  + L+  K  LE  +  L+
Sbjct: 67  FVKAKVKDKDKVIVSLGAGYSAEKDLDEAIEILDKRKEELEKALEKLE 114

Length = 140

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	197
KOG3313	187	consensus Molecular chaperone Prefoldin, subunit 3	100.0
PRK03947	140	prefoldin subunit alpha; Reviewed	99.84
TIGR00293	126	prefoldin, archaeal alpha subunit/eukaryotic subun	99.82
cd00584	129	Prefoldin_alpha Prefoldin alpha subunit; Prefoldin	99.78
PF02996	120	Prefoldin: Prefoldin subunit; InterPro: IPR004127	99.62
cd00890	129	Prefoldin Prefoldin is a hexameric molecular chape	99.61
COG1730	145	GIM5 Predicted prefoldin, molecular chaperone impl	98.06
PRK14011	144	prefoldin subunit alpha; Provisional	97.75
PRK01203	130	prefoldin subunit alpha; Provisional	97.37
KOG3047	157	consensus Predicted transcriptional regulator UXT	92.77
TIGR02338	110	gimC_beta prefoldin, beta subunit, archaeal. Chape	92.62
cd00632	105	Prefoldin_beta Prefoldin beta; Prefoldin is a hexa	88.89
PF01920	106	Prefoldin_2: Prefoldin subunit; InterPro: IPR00277	80.25

>KOG3313 consensus Molecular chaperone Prefoldin, subunit 3 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.7e-73  Score=472.36  Aligned_cols=167  Identities=54%  Similarity=0.872  Sum_probs=160.6

Q ss_pred             CCCCCCCCcccccccHHHHhccCC-cCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhcCC
Q 029196           23 TTERRGIPAAQFVEDVQTFLSQLD-LDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGG  101 (197)
Q Consensus        23 ~~~~rgIP~A~FIedVe~f~~~~~-~~~e~~l~~~qe~~~KYkfmE~~l~~~~~~L~~KIPdikktL~~V~~L~~kk~~~  101 (197)
                      .+++||||+|+|||||++|+++|+ ...++ ++.|||+|+||||||.+|.+++++|+.|||||++||++|+.|+++++.+
T Consensus         9 ~k~~rGIPeA~fiedV~s~~~qp~~~~~~~-l~~~~E~~~kYkfme~~l~a~~~~l~~kIPd~entLeiv~~l~~~~~~~   87 (187)
T KOG3313|consen    9 SKNARGIPEAKFIEDVESYISQPELESLEA-LKKLQERYGKYKFMEASLLAQKRRLKTKIPDIENTLEIVQTLIAKKDEG   87 (187)
T ss_pred             hhccCCCChhHHHHHHHHHHcCcccccchH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhCcccC
Confidence            689999999999999999999997 34444 9999999999999999999999999999999999999999999999999


Q ss_pred             CceeEEEEecccceeeeeeCCCCeeEEeeccceeeeeccCc------cchHHHHHhHHHHHHHHHHHHhhhcceeehhhh
Q 029196          102 EALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDE------KNLENAKASLEVLIADLQFLRDQVTITQVTVAR  175 (197)
Q Consensus       102 e~~~t~F~LsD~lyakA~I~ptd~V~LWLGANVMlEY~ldE------~nl~~A~~~l~~~~eDL~fLRdQiTTtEVN~AR  175 (197)
                      +.++++|+|||+||+||+|||+++|||||||||||||+|+|      +||.+|+++|..+++||+|||||||||||||||
T Consensus        88 ~s~~t~f~lsd~vy~ka~V~~~~kV~LWLGAnVMlEY~leEAeaLLkknl~sa~k~l~~~~~DldfLrdQvTTtEVN~Ar  167 (187)
T KOG3313|consen   88 ESFETTFLLSDGVYTKASVPPTDKVYLWLGANVMLEYDLEEAEALLKKNLTSAVKSLDVLEEDLDFLRDQVTTTEVNMAR  167 (187)
T ss_pred             cceeEEEEecccceeeeecCCcCeEEEEecceeEEEecHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhceeeeeeeee
Confidence            99999999999999999999999999999999999999999      999999999999999999999999999999999


Q ss_pred             hhhhhHHhhHHHHHH
Q 029196          176 VYNWDVHQRRIRQAA  190 (197)
Q Consensus       176 vyNwdV~rrr~~k~~  190 (197)
                      ||||||++||+.+..
T Consensus       168 vYNw~V~~R~~~~~t  182 (187)
T KOG3313|consen  168 VYNWDVKKRRAAKAT  182 (187)
T ss_pred             eeechHHHHHHHhhc
Confidence            999999999987654

>PRK03947 prefoldin subunit alpha; Reviewed

Probab=99.84  E-value=2e-20  Score=148.35  Aligned_cols=124  Identities=27%  Similarity=0.327  Sum_probs=114.1

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhcCCCceeEEEEecccceeeeeeCCCCeeEE
Q 029196           49 VNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCL  128 (197)
Q Consensus        49 ~e~~l~~~qe~~~KYkfmE~~l~~~~~~L~~KIPdikktL~~V~~L~~kk~~~e~~~t~F~LsD~lyakA~I~ptd~V~L  128 (197)
                      .+.-++.++++|++|+....+|.+++..|...||+++.+++.|+.|..+.   ++.++.|.|++++|++|.|+++++|++
T Consensus         4 ~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~l~~~~---~~~e~lvplg~~~yv~~~v~~~~kV~v   80 (140)
T PRK03947          4 SEQELEELAAQLQALQAQIEALQQQLEELQASINELDTAKETLEELKSKG---EGKETLVPIGAGSFVKAKVKDKDKVIV   80 (140)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC---CCCeEEEEcCCCcEEEEEecCCCeEEE
Confidence            45568999999999999999999999999999999999999999997653   568999999999999999999999999


Q ss_pred             eeccceeeeeccCc------cchHHHHHhHHHHHHHHHHHHhhhcceeehhhh
Q 029196          129 WLGANVMLEYSCDE------KNLENAKASLEVLIADLQFLRDQVTITQVTVAR  175 (197)
Q Consensus       129 WLGANVMlEY~ldE------~nl~~A~~~l~~~~eDL~fLRdQiTTtEVN~AR  175 (197)
                      |||+|||+||+++|      ++++.+.++++.+.++|.++++|+.-..=-+.+
T Consensus        81 ~lG~g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~  133 (140)
T PRK03947         81 SLGAGYSAEKDLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQ  133 (140)
T ss_pred             EcCCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999      899999999999999999999998765544444

>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5

Probab=99.82  E-value=5.5e-20  Score=143.06  Aligned_cols=113  Identities=26%  Similarity=0.346  Sum_probs=106.6

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhcCCCceeEEEEecccceeeeeeCCCCeeEEeeccc
Q 029196           54 AFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGAN  133 (197)
Q Consensus        54 ~~~qe~~~KYkfmE~~l~~~~~~L~~KIPdikktL~~V~~L~~kk~~~e~~~t~F~LsD~lyakA~I~ptd~V~LWLGAN  133 (197)
                      +.+..++++|+..-..+.+++..|...||+++.++++|++|..+    +..++.++|++++|.+|.|+++++|++|||+|
T Consensus         2 qql~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L~~l~~~----~~~~~lv~lg~~~~v~~~v~~~~~v~v~iG~g   77 (126)
T TIGR00293         2 QQLAAELQILQQQVESLQAQIAALRALIAELETAIETLEDLKGA----EGKETLVPVGAGSFVKAKVKDTDKVLVSIGSG   77 (126)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc----CCCeEEEEcCCCeEEEEEeCCCCEEEEEcCCC
Confidence            56788999999999999999999999999999999999999654    45889999999999999999999999999999


Q ss_pred             eeeeeccCc------cchHHHHHhHHHHHHHHHHHHhhhccee
Q 029196          134 VMLEYSCDE------KNLENAKASLEVLIADLQFLRDQVTITQ  170 (197)
Q Consensus       134 VMlEY~ldE------~nl~~A~~~l~~~~eDL~fLRdQiTTtE  170 (197)
                      ||+|++++|      ++++.+.++++.+.+++.|+++|++...
T Consensus        78 ~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~  120 (126)
T TIGR00293        78 YYVEKDAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLE  120 (126)
T ss_pred             EEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999      9999999999999999999999998753

This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.

>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly

Probab=99.78  E-value=2e-18  Score=134.74  Aligned_cols=122  Identities=24%  Similarity=0.347  Sum_probs=115.9

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhcCCCceeEEEEecccceeeeeeCCCCeeEEeeccc
Q 029196           54 AFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGAN  133 (197)
Q Consensus        54 ~~~qe~~~KYkfmE~~l~~~~~~L~~KIPdikktL~~V~~L~~kk~~~e~~~t~F~LsD~lyakA~I~ptd~V~LWLGAN  133 (197)
                      ..++.++++|+..-.+++++...|...|++...+++.|+.|...   +.+.++.++|+.++|.+|.|+++++|++|||+|
T Consensus         2 ~~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~---~~~~~~lvplg~~~~~~~~i~~~~~v~v~iG~g   78 (129)
T cd00584           2 EQLAAQLQVLQQEIEELQQELARLNEAIAEYEQAKETLETLKKA---DEGKETLVPLGAGVFVKAKVKDTDKVLVDLGTG   78 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCCeEEEECCCCeEEeEEeCCCCEEEEEcCCC
Confidence            46889999999999999999999999999999999999999764   357899999999999999999999999999999


Q ss_pred             eeeeeccCc------cchHHHHHhHHHHHHHHHHHHhhhcceeehhhhhhh
Q 029196          134 VMLEYSCDE------KNLENAKASLEVLIADLQFLRDQVTITQVTVARVYN  178 (197)
Q Consensus       134 VMlEY~ldE------~nl~~A~~~l~~~~eDL~fLRdQiTTtEVN~ARvyN  178 (197)
                      +|+|++++|      ++++..+++++.+++++..+++|++.++.+++++|.
T Consensus        79 ~~vE~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~~~~  129 (129)
T cd00584          79 YYVEKDLEEAIEFLDKKIEELTKQIEKLQKELAKLKDQINTLEAELQELQQ  129 (129)
T ss_pred             EEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999      999999999999999999999999999999999874

The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.

>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits

Probab=99.62  E-value=2.6e-15  Score=114.88  Aligned_cols=109  Identities=26%  Similarity=0.367  Sum_probs=100.9

Q ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHHHhhhcCCCceeEEEEecccceeeeeeCCCCeeEEeeccceeeeeccCc-----
Q 029196           68 MKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDE-----  142 (197)
Q Consensus        68 ~~l~~~~~~L~~KIPdikktL~~V~~L~~kk~~~e~~~t~F~LsD~lyakA~I~ptd~V~LWLGANVMlEY~ldE-----  142 (197)
                      .++.++...|...+.++..+++.|+.|..   .+.+.++.+.|..++|.+|.|+++++|++|||+|+++|.+++|     
T Consensus         6 ~~l~~~~~~l~~~~~e~~~~~~~l~~l~~---~~~~~~~lvplg~~~~v~g~i~~~~~vlV~lG~~~~vE~s~~eA~~~l   82 (120)
T PF02996_consen    6 ENLQQQIEQLEEQIEEYEEAKETLEELKK---EKKEHEILVPLGSGVFVPGKIPDTDKVLVSLGAGYYVEMSLEEAIEFL   82 (120)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----TT-EEEEEECTTEEEEEE-SSTTEEEEEEETTEEEEEEHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cCCCceeeecCCCCeEEEEEeCCCCEEEEEeeCCeEEEecHHHHHHHH
Confidence            57888999999999999999999999977   2467999999999999999999999999999999999999999     


Q ss_pred             -cchHHHHHhHHHHHHHHHHHHhhhcceeehhhhhhhh
Q 029196          143 -KNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNW  179 (197)
Q Consensus       143 -~nl~~A~~~l~~~~eDL~fLRdQiTTtEVN~ARvyNw  179 (197)
                       +++...+..++.+.+.+..++++++.++-.++++|+|
T Consensus        83 ~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~  120 (120)
T PF02996_consen   83 KKRIKELEEQLEKLEKELAELQAQIEQLEQTLQQLYQQ  120 (120)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence             9999999999999999999999999999999999997

Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.

>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly

Probab=99.61  E-value=5.1e-15  Score=113.95  Aligned_cols=122  Identities=30%  Similarity=0.375  Sum_probs=110.8

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhcCCCceeEEEEecccceeeeeeCCCCeeEEeeccc
Q 029196           54 AFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGAN  133 (197)
Q Consensus        54 ~~~qe~~~KYkfmE~~l~~~~~~L~~KIPdikktL~~V~~L~~kk~~~e~~~t~F~LsD~lyakA~I~ptd~V~LWLGAN  133 (197)
                      ..+...+++|+..-..+.+++..|...+++++.+++.|+.|....+   +.+..-.+..++|.+|.|+++++|++|+|+|
T Consensus         2 ~~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~---~~~~l~~~g~~~~~~~~i~~~~~v~v~iG~~   78 (129)
T cd00890           2 QELAAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLKKAEE---EKELLVPLGAGLFVKAEVKDDDKVLVDLGTG   78 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC---CCeEEEecCCceEEEEEECCCCEEEEEecCC
Confidence            4677889999999999999999999999999999999999976542   3334446699999999999999999999999


Q ss_pred             eeeeeccCc------cchHHHHHhHHHHHHHHHHHHhhhcceeehhhhhhh
Q 029196          134 VMLEYSCDE------KNLENAKASLEVLIADLQFLRDQVTITQVTVARVYN  178 (197)
Q Consensus       134 VMlEY~ldE------~nl~~A~~~l~~~~eDL~fLRdQiTTtEVN~ARvyN  178 (197)
                      +++|++++|      ++++..+++++.+++++..++++++.++.+|.++|+
T Consensus        79 ~~ve~~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~  129 (129)
T cd00890          79 VYVEKSLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQLQQ  129 (129)
T ss_pred             EEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999      899999999999999999999999999999999874

The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.

>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]

Probab=98.06  E-value=0.0001  Score=60.47  Aligned_cols=112  Identities=27%  Similarity=0.373  Sum_probs=89.2

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhcCCCceeEEEEecccceeeeeeCCCCeeEEeecc
Q 029196           53 LAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGA  132 (197)
Q Consensus        53 l~~~qe~~~KYkfmE~~l~~~~~~L~~KIPdikktL~~V~~L~~kk~~~e~~~t~F~LsD~lyakA~I~ptd~V~LWLGA  132 (197)
                      +..+-..|+-|.--=..|+++...|..-|-++..+++.|+.|+...+   .-++.+.+.-++|.+|.|...++|-.=+|+
T Consensus         8 le~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~lk~~~~---g~E~LVpvGag~fv~~kv~~~~kviV~iGs   84 (145)
T COG1730           8 LEELAAQLQILQSQIESLQAQIAALNAAISELQTAIETLENLKGAGE---GKEVLVPVGAGLFVKAKVKDMDKVIVSIGS   84 (145)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CceEEEEcCCCceEEEEeccCceEEEEcCC
Confidence            34555556666666677899999999999999999999999987643   238999999999999999999999999999


Q ss_pred             ceeeeeccCc------cchHHHHHhHHHHHHHHHHHHhhhc
Q 029196          133 NVMLEYSCDE------KNLENAKASLEVLIADLQFLRDQVT  167 (197)
Q Consensus       133 NVMlEY~ldE------~nl~~A~~~l~~~~eDL~fLRdQiT  167 (197)
                      ++-+|=+++|      ++++...+.+..+.+-|+=|-.+++
T Consensus        85 g~~ae~~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~  125 (145)
T COG1730          85 GYYAEKSADEAIEFLKKRIEELEKAIEKLQQALAELAQRIE  125 (145)
T ss_pred             ceeeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999      5555555555555555555555444

>PRK14011 prefoldin subunit alpha; Provisional

Probab=97.75  E-value=0.00073  Score=55.31  Aligned_cols=105  Identities=20%  Similarity=0.277  Sum_probs=84.7

Q ss_pred             HHhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhcCCCceeEEEEecccceeeeeeCCCCeeEEeeccceeeeec
Q 029196           60 LQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYS  139 (197)
Q Consensus        60 ~~KYkfmE~~l~~~~~~L~~KIPdikktL~~V~~L~~kk~~~e~~~t~F~LsD~lyakA~I~ptd~V~LWLGANVMlEY~  139 (197)
                      +.-|+-==..|.++...|..-+-++..+++.++-+.      .+-++.-+|..++|.+|.|.++++|.+=+|+++-+|-+
T Consensus        12 l~~~~~qie~L~~si~~L~~a~~e~~~~ie~L~~l~------~~~eiLVPLg~s~yV~g~i~d~dkVlVdIGtGy~VEk~   85 (144)
T PRK14011         12 LEVYNQQVQKLQEELSSIDMMKMELLKSIESMEGLK------TSEEILIPLGPGAFLKAKIVDPDKAILGVGSDIYLEKD   85 (144)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC------CCCeEEEEcCCCcEEeEEecCCCeEEEEccCCeEEEec
Confidence            344444344566777777777777788888777443      35778899999999999999999999999999999999


Q ss_pred             cCc------cchHHHHHhHHHHHHHHHHHHhhhccee
Q 029196          140 CDE------KNLENAKASLEVLIADLQFLRDQVTITQ  170 (197)
Q Consensus       140 ldE------~nl~~A~~~l~~~~eDL~fLRdQiTTtE  170 (197)
                      ++|      ++++...++++.+.+.|+=+++++...+
T Consensus        86 ~~eA~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~  122 (144)
T PRK14011         86 VSEVIEDFKKSVEELDKTKKEGNKKIEELNKEITKLR  122 (144)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999      7788888888888888888888876544

>PRK01203 prefoldin subunit alpha; Provisional

Probab=97.37  E-value=0.0044  Score=50.20  Aligned_cols=95  Identities=18%  Similarity=0.296  Sum_probs=69.6

Q ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHhhhcCCCceeEEEEecccceeeeeeCCCCeeEEeeccceeeeeccCccchH
Q 029196           67 EMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEKNLE  146 (197)
Q Consensus        67 E~~l~~~~~~L~~KIPdikktL~~V~~L~~kk~~~e~~~t~F~LsD~lyakA~I~ptd~V~LWLGANVMlEY~ldE~nl~  146 (197)
                      =..|.++...|+.-+-++..|++.++-+..    ++.-++.-+|..++|.+|.|.++++|-+=+|+++.+|=++++ .++
T Consensus        16 ~e~l~~ql~~L~~a~se~~~~ie~L~~~~~----~~~~eiLVPLg~slYV~gki~d~~kVlVdIGTGy~VEK~~e~-kie   90 (130)
T PRK01203         16 ISSVDSQIDSLNKTLSEVQQTISFLSDNEL----DNSKELLISIGSGIFADGNIKKDKDLIVPIGSGVYIAEERER-TIE   90 (130)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcccc----CCCCeEEEEccCCceEeEEecCCCeEEEEcCCCeEEEecHHH-HHH
Confidence            345677778888888888888888877532    234778899999999999999999999999999999999998 444


Q ss_pred             HHHHhHHHHHHHHHHHHhhh
Q 029196          147 NAKASLEVLIADLQFLRDQV  166 (197)
Q Consensus       147 ~A~~~l~~~~eDL~fLRdQi  166 (197)
                      ..+++++.++.=+.=.+.+.
T Consensus        91 ~L~~~ie~Le~~i~~K~~~l  110 (130)
T PRK01203         91 RLKENLEDLKDSIQKLNDQR  110 (130)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            44444444443333333333

>KOG3047 consensus Predicted transcriptional regulator UXT [Transcription]

Probab=92.77  E-value=0.76  Score=37.99  Aligned_cols=41  Identities=17%  Similarity=0.308  Sum_probs=36.9

Q ss_pred             CceeEEEEecccceeeeeeCCCCeeEEeeccceeeeeccCc
Q 029196          102 EALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDE  142 (197)
Q Consensus       102 e~~~t~F~LsD~lyakA~I~ptd~V~LWLGANVMlEY~ldE  142 (197)
                      .+++..-.|.-++|.--.||.|..|++-||-++.||..|.+
T Consensus        65 kel~~ktdLGcnfFmdi~VpDTk~i~VaL~~~fflElkLad  105 (157)
T KOG3047|consen   65 KELEGKTDLGCNFFMDIEVPDTKHIVVALCDDFFLELKLAD  105 (157)
T ss_pred             hhhhccccccceeeEeeecCCcceEEEEeecceeeeehHHH
Confidence            45666677888999999999999999999999999999998

>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal

Probab=92.62  E-value=0.28  Score=37.74  Aligned_cols=83  Identities=20%  Similarity=0.319  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHHHhhhcCCCceeEEEEecccceeeeeeCCCCeeEEeeccceeeeeccCc-----
Q 029196           68 MKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDE-----  142 (197)
Q Consensus        68 ~~l~~~~~~L~~KIPdikktL~~V~~L~~kk~~~e~~~t~F~LsD~lyakA~I~ptd~V~LWLGANVMlEY~ldE-----  142 (197)
                      ..+.+++..|...+-+.+.+++-+..|.                          |..+||-=+| +|+|+-+.+|     
T Consensus        20 ~~l~~q~~~le~~~~E~~~v~~eL~~l~--------------------------~d~~vyk~VG-~vlv~~~~~e~~~~l   72 (110)
T TIGR02338        20 QAVATQKQQVEAQLKEAEKALEELERLP--------------------------DDTPVYKSVG-NLLVKTDKEEAIQEL   72 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCC--------------------------CcchhHHHhc-hhhheecHHHHHHHH
Confidence            4556677777777777777777666552                          3334444455 4999999999     


Q ss_pred             -cchHHHHHhHHHHHHHHHHHHhhhcceeehhhhhh
Q 029196          143 -KNLENAKASLEVLIADLQFLRDQVTITQVTVARVY  177 (197)
Q Consensus       143 -~nl~~A~~~l~~~~eDL~fLRdQiTTtEVN~ARvy  177 (197)
                       ++++.....++.++..+++|+.++.-++=++...+
T Consensus        73 ~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~~  108 (110)
T TIGR02338        73 KEKKETLELRVKTLQRQEERLREQLKELQEKIQEAL  108 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence             88899999999999999999999988777766554

Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.

>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea

Probab=88.89  E-value=0.55  Score=35.69  Aligned_cols=90  Identities=21%  Similarity=0.308  Sum_probs=63.6

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhcCCCceeEEEEecccceeeeeeCCCCeeEEeeccceee
Q 029196           57 QERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVML  136 (197)
Q Consensus        57 qe~~~KYkfmE~~l~~~~~~L~~KIPdikktL~~V~~L~~kk~~~e~~~t~F~LsD~lyakA~I~ptd~V~LWLGANVMl  136 (197)
                      ...|++|+-=-..+.+++..|...+-+.+.+++-+..|.                          |..+||.=+| +|++
T Consensus         5 ~~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~--------------------------~d~~vy~~VG-~vfv   57 (105)
T cd00632           5 LAQLQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKLA--------------------------DDAEVYKLVG-NVLV   57 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--------------------------CcchHHHHhh-hHHh
Confidence            334444444344667778888888888888877776662                          2334444444 4999


Q ss_pred             eeccCc------cchHHHHHhHHHHHHHHHHHHhhhcceeehh
Q 029196          137 EYSCDE------KNLENAKASLEVLIADLQFLRDQVTITQVTV  173 (197)
Q Consensus       137 EY~ldE------~nl~~A~~~l~~~~eDL~fLRdQiTTtEVN~  173 (197)
                      +.|.+|      ++++.....++.++..++.|..++.-.+.++
T Consensus        58 ~~~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l  100 (105)
T cd00632          58 KQEKEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKI  100 (105)
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999      7788888888899999999998887555444

Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st

>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea

Probab=80.25  E-value=15  Score=26.90  Aligned_cols=91  Identities=20%  Similarity=0.317  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhcCCCceeEEEEecccceeeeeeCCCCeeEEeec
Q 029196           52 ALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLG  131 (197)
Q Consensus        52 ~l~~~qe~~~KYkfmE~~l~~~~~~L~~KIPdikktL~~V~~L~~kk~~~e~~~t~F~LsD~lyakA~I~ptd~V~LWLG  131 (197)
                      .+..|+.+.+.|.-+..    ++..|...+-+++.+++-+..|                          ||..+||.=+|
T Consensus         3 ~~~~~~~l~~~l~~~~~----q~~~l~~~~~~~~~~~~eL~~l--------------------------~~~~~~y~~vG   52 (106)
T PF01920_consen    3 LQNKFQELNQQLQQLEQ----QIQQLERQLRELELTLEELEKL--------------------------DDDRKVYKSVG   52 (106)
T ss_dssp             HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHTS--------------------------STT-EEEEEET
T ss_pred             HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhC--------------------------CCcchhHHHHh
Confidence            45566666666655554    3444555555666666655544                          23334444443


Q ss_pred             cceeeeeccCc------cchHHHHHhHHHHHHHHHHHHhhhcceeehh
Q 029196          132 ANVMLEYSCDE------KNLENAKASLEVLIADLQFLRDQVTITQVTV  173 (197)
Q Consensus       132 ANVMlEY~ldE------~nl~~A~~~l~~~~eDL~fLRdQiTTtEVN~  173 (197)
                       ++.+..|.++      +.++.++..++.++.-+.++.+++.-++.++
T Consensus        53 -~~fv~~~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l   99 (106)
T PF01920_consen   53 -KMFVKQDKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKL   99 (106)
T ss_dssp             -TEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             5888999998      7777777777788888888877776554443

Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	197
1fxk_C	133	Protein (prefoldin); archaeal protein, chaperone;	99.93
2zdi_C	151	Prefoldin subunit alpha; chaperone, cytoplasm; 3.0	99.91
2zqm_A	117	Prefoldin beta subunit 1; chaperone; HET: CIT; 1.9	94.07
1fxk_A	107	Prefoldin; archaeal protein, chaperone; 2.30A {Met	93.43

>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1

Probab=99.93  E-value=1.2e-25  Score=175.38  Aligned_cols=121  Identities=18%  Similarity=0.269  Sum_probs=113.8

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhcCCCceeEEEEecccceeeeeeCCCCeeEEeecc
Q 029196           53 LAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGA  132 (197)
Q Consensus        53 l~~~qe~~~KYkfmE~~l~~~~~~L~~KIPdikktL~~V~~L~~kk~~~e~~~t~F~LsD~lyakA~I~ptd~V~LWLGA  132 (197)
                      ++.|++++++|+++..++.+++..|..+||++++++++|+.|..    .++.++.|+|++++|++|.|+++++||+|||+
T Consensus         3 ~~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~l~~----~~~~~~lvplg~~~yv~a~i~~~~~V~v~lG~   78 (133)
T 1fxk_C            3 LAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQG----KDGSETLVPVGAGSFIKAELKDTSEVIMSVGA   78 (133)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----CTTCEEEEEEETTEEEEEECCSTTEEEEEEET
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----CCCCeEEEEcCCCcEEEEEECCCCEEEEEcCC
Confidence            57899999999999999999999999999999999999999975    35799999999999999999999999999999


Q ss_pred             ceeeeeccCc------cchHHHHHhHHHHHHHHHHHHhhhcceeehhhhhh
Q 029196          133 NVMLEYSCDE------KNLENAKASLEVLIADLQFLRDQVTITQVTVARVY  177 (197)
Q Consensus       133 NVMlEY~ldE------~nl~~A~~~l~~~~eDL~fLRdQiTTtEVN~ARvy  177 (197)
                      |+|+||+++|      ++++.++.+++.+++++.|+|+||++++--+...+
T Consensus        79 g~~vE~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~  129 (133)
T 1fxk_C           79 GVAIKKNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELL  129 (133)
T ss_dssp             TEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999      99999999999999999999999999887665543

>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}

Probab=99.91  E-value=5.6e-25  Score=175.86  Aligned_cols=123  Identities=19%  Similarity=0.218  Sum_probs=116.9

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHH---HhccccHHHHHHHHHHHHhhhcCCCceeEEEEecccceeeeeeCCCCee
Q 029196           50 NSALAFLQERLQQYKLVEMKLLAQQRDL---QAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSV  126 (197)
Q Consensus        50 e~~l~~~qe~~~KYkfmE~~l~~~~~~L---~~KIPdikktL~~V~~L~~kk~~~e~~~t~F~LsD~lyakA~I~ptd~V  126 (197)
                      ++-++.+.+.+++|+++..++.+++..|   ..+|||++++|+.|+.|..     ++.++.|+|++++|++|.|+++++|
T Consensus         8 ~~~l~ql~~~~qql~~~~~~l~~~~~~L~~a~~~~~e~~~~l~~l~~l~~-----~~~~ilvplg~~~yv~g~i~~~~~V   82 (151)
T 2zdi_C            8 NKELEKLAYEYQVLQAQAQILAQNLELLNLAKAEVQTVRETLENLKKIEE-----EKPEILVPIGAGSFLKGVIVDKNNA   82 (151)
T ss_dssp             TTHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC-----SSCEEEEECSSSCEEEEECSCTTEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----CCceEEEEcCCCeEEEEEECCCCEE
Confidence            3447899999999999999999999999   9999999999999998853     5689999999999999999999999


Q ss_pred             EEeeccceeeeeccCc------cchHHHHHhHHHHHHHHHHHHhhhcceeehhhhhh
Q 029196          127 CLWLGANVMLEYSCDE------KNLENAKASLEVLIADLQFLRDQVTITQVTVARVY  177 (197)
Q Consensus       127 ~LWLGANVMlEY~ldE------~nl~~A~~~l~~~~eDL~fLRdQiTTtEVN~ARvy  177 (197)
                      ++||||||||||+++|      ++++.+..+++.+++++.|+++||+++++++..++
T Consensus        83 ~v~lG~g~~vE~~~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~  139 (151)
T 2zdi_C           83 IVSVGSGYAVERSIDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQ  139 (151)
T ss_dssp             EEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred             EEEeCCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999      99999999999999999999999999999999876

>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A

Probab=94.07  E-value=0.32  Score=35.75  Aligned_cols=96  Identities=20%  Similarity=0.328  Sum_probs=63.3

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhcCCCceeEEEEecccceeeeeeCCCCeeEEe
Q 029196           50 NSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLW  129 (197)
Q Consensus        50 e~~l~~~qe~~~KYkfmE~~l~~~~~~L~~KIPdikktL~~V~~L~~kk~~~e~~~t~F~LsD~lyakA~I~ptd~V~LW  129 (197)
                      +..+..|+.+.+++.-    +.+++..|...+-+++.+++-+..|                          |+..+||.=
T Consensus         9 Q~~i~~~~~l~~~~~~----l~~q~~~l~~~~~e~~~~~~eL~~l--------------------------~~d~~vy~~   58 (117)
T 2zqm_A            9 QAMLGQLESYQQQLQL----VVQQKQKVQLELTEAKKALDEIESL--------------------------PDDAVVYKT   58 (117)
T ss_dssp             HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHTS--------------------------CTTCCEEEE
T ss_pred             HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHcC--------------------------CCCcHhHHH
Confidence            3344444444444443    3445555555555555555554444                          233356666


Q ss_pred             eccceeeeeccCc------cchHHHHHhHHHHHHHHHHHHhhhcceeehhhhh
Q 029196          130 LGANVMLEYSCDE------KNLENAKASLEVLIADLQFLRDQVTITQVTVARV  176 (197)
Q Consensus       130 LGANVMlEY~ldE------~nl~~A~~~l~~~~eDL~fLRdQiTTtEVN~ARv  176 (197)
                      +| +|.|+-+.++      ++++.....++.++..+++++.++.-.+.++...
T Consensus        59 iG-~vfv~~~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~  110 (117)
T 2zqm_A           59 VG-TLIVKTTKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSA  110 (117)
T ss_dssp             ET-TEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hh-HHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67 8999999999      7788888888889999999999988777666543

>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B

Probab=93.43  E-value=0.55  Score=34.00  Aligned_cols=94  Identities=21%  Similarity=0.292  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhcCCCceeEEEEecccceeeeeeCCCCeeEE
Q 029196           49 VNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCL  128 (197)
Q Consensus        49 ~e~~l~~~qe~~~KYkfmE~~l~~~~~~L~~KIPdikktL~~V~~L~~kk~~~e~~~t~F~LsD~lyakA~I~ptd~V~L  128 (197)
                      ++..+..|+.+.+++.-+.    +++..+...+-+++.+++-+..|                          |+..+||-
T Consensus         3 ~Q~~i~~f~~lq~~~~~l~----~q~~~l~~~~~e~~~~~~EL~~l--------------------------~~d~~vy~   52 (107)
T 1fxk_A            3 VQHQLAQFQQLQQQAQAIS----VQKQTVEMQINETQKALEELSRA--------------------------ADDAEVYK   52 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHS--------------------------CTTCCEEE
T ss_pred             HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHcC--------------------------CCCchHHH
Confidence            4455556666655555444    45555566666666666655554                          22334555


Q ss_pred             eeccceeeeeccCc------cchHHHHHhHHHHHHHHHHHHhhhcceeehh
Q 029196          129 WLGANVMLEYSCDE------KNLENAKASLEVLIADLQFLRDQVTITQVTV  173 (197)
Q Consensus       129 WLGANVMlEY~ldE------~nl~~A~~~l~~~~eDL~fLRdQiTTtEVN~  173 (197)
                      =+| +|.|+-|.++      ++++.....++.++..++.+++++.-++.++
T Consensus        53 ~iG-~vfv~~~~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l  102 (107)
T 1fxk_A           53 SSG-NILIRVAKDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNI  102 (107)
T ss_dssp             EET-TEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHh-HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555 8999999999      7778888888888888889888887666554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	197
d1fxkc_	133	a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Met	9e-13

>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 133

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin alpha subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 60.3 bits (146), Expect = 9e-13
 Identities = 24/132 (18%), Positives = 56/132 (42%), Gaps = 10/132 (7%)

Query: 51  SALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEV 110
           +ALA +  +L  Y+     +  Q   ++A I ++E     ++ +Q K            V
Sbjct: 1   AALAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQGKDGS----ETLVPV 56

Query: 111 SEGIFSRARIEDTDSVCLWLGANVMLEYSCDE------KNLENAKASLEVLIADLQFLRD 164
             G F +A ++DT  V + +GA V ++ + ++            +++L+ +  +L+ + D
Sbjct: 57  GAGSFIKAELKDTSEVIMSVGAGVAIKKNFEDAMESIKSQKNELESTLQKMGENLRAITD 116

Query: 165 QVTITQVTVARV 176
            +         +
Sbjct: 117 IMMKLSPQAEEL 128

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	197
d1fxkc_	133	Prefoldin alpha subunit {Archaeon Methanobacterium	99.56
d1fxka_	107	Prefoldin beta subunit {Archaeon Methanobacterium	87.82

>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin alpha subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.56  E-value=1.6e-14  Score=110.17  Aligned_cols=120  Identities=19%  Similarity=0.284  Sum_probs=109.8

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhcCCCceeEEEEecccceeeeeeCCCCeeEEeecc
Q 029196           53 LAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGA  132 (197)
Q Consensus        53 l~~~qe~~~KYkfmE~~l~~~~~~L~~KIPdikktL~~V~~L~~kk~~~e~~~t~F~LsD~lyakA~I~ptd~V~LWLGA  132 (197)
                      |..+..+++.|+-.-..+.++...|...++++..+++.|+.|..+    +.-++.++|..++|.+|.|+++++|++|||+
T Consensus         3 L~eL~~~~~~l~~~l~~l~~~i~~l~~~~~e~~~~~~~L~~l~~~----~~~e~lvplg~~~~v~~~i~~~~~vlV~lG~   78 (133)
T d1fxkc_           3 LAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQGK----DGSETLVPVGAGSFIKAELKDTSEVIMSVGA   78 (133)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----TTCEEEEEEETTEEEEEECCSTTEEEEEEET
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC----CCCeEEEEcCCceEEEEEecCCCceEEEecC
Confidence            566777788888889999999999999999999999999999643    3457899999999999999999999999999


Q ss_pred             ceeeeeccCc------cchHHHHHhHHHHHHHHHHHHhhhcceeehhhhh
Q 029196          133 NVMLEYSCDE------KNLENAKASLEVLIADLQFLRDQVTITQVTVARV  176 (197)
Q Consensus       133 NVMlEY~ldE------~nl~~A~~~l~~~~eDL~fLRdQiTTtEVN~ARv  176 (197)
                      |+++|+++++      ++++..+..++.+.+++..++++|+.++..+.++
T Consensus        79 g~~vE~~~~eA~~~l~~ri~~l~~~~~~l~~~~~~~~~~i~~l~~~~~~l  128 (133)
T d1fxkc_          79 GVAIKKNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEEL  128 (133)
T ss_dssp             TEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CeeeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999      9999999999999999999999999988877765

>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin beta subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=87.82  E-value=0.72  Score=32.30  Aligned_cols=86  Identities=16%  Similarity=0.292  Sum_probs=52.1

Q ss_pred             HHHHHHhHHHHHHH---HHHHHHHHHhccccHHHHHHHHHHHHhhhcCCCceeEEEEecccceeeeeeCCCCeeEEeecc
Q 029196           56 LQERLQQYKLVEMK---LLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGA  132 (197)
Q Consensus        56 ~qe~~~KYkfmE~~---l~~~~~~L~~KIPdikktL~~V~~L~~kk~~~e~~~t~F~LsD~lyakA~I~ptd~V~LWLGA  132 (197)
                      +++.+.+|.-+...   +.+++..|...+-+.+.+|+-+..+                          ||..+||== =.
T Consensus         3 lqe~~~~~q~lq~el~~~~~q~~~le~q~~E~~~vl~eL~~l--------------------------~~d~~vyk~-vG   55 (107)
T d1fxka_           3 VQHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRA--------------------------ADDAEVYKS-SG   55 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--------------------------CTTCCEEEE-ET
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--------------------------CcccHHHHH-hc
Confidence            34444444444444   3477788888888888888877655                          222334433 35


Q ss_pred             ceeeeeccCc------cchHHHHHhHHHHHHHHHHHHhhhcc
Q 029196          133 NVMLEYSCDE------KNLENAKASLEVLIADLQFLRDQVTI  168 (197)
Q Consensus       133 NVMlEY~ldE------~nl~~A~~~l~~~~eDL~fLRdQiTT  168 (197)
                      +|+++=+.+|      ++++.....++.++..+.-|++++..
T Consensus        56 ~vLv~~~~~e~~~~l~~~~e~l~~~i~~l~~q~~~l~~~l~~   97 (107)
T d1fxka_          56 NILIRVAKDELTEELQEKLETLQLREKTIERQEERVMKKLQE   97 (107)
T ss_dssp             TEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7899888887      55555555555555555555555443