Citrus Sinensis ID: 029199

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------
Protein Sequence
MAGTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSELDSNTLQIGHAAVASANA
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccEEEcccccHHHHHHcccccccccccccHHHHHcccccccEEEccccccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccccccHHHcccccccccHHHHHcccc
Coil and Loop (DISEMBL)
MAGTALSEEVKVMEALWNagfeqergtvGQEMYLAKglgvggrggrgggtggggsgfypagsggdsqGVEEYYKKMVeenpgnplflsNYAQFLYQSKQDLPKAEEYYSRailadpgdgeiLSQYAKLVWELHNDQDRAATYYEravhaspedshvhasyagflweteedndecdapseldsntlQIGHAAVASANA
Flexible Loop (DISEMBL)
MAGTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAvhaspedshVHASYAGFLWETEEDNDECDAPSELDSNTLQIGHAAVASANA
Low Complexity Region (SEG)
MAGTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKglgvggrggrgggtggggsgfypagsggDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSELDSNTLQIGHAAVASANA
Disordered region (IsUnstruct)
**********KVMEALWNAGFEQERGTVGQEMYLAKGLGVG*******************************Y********GNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHAS***SHVHASYAGFLWE*******************************
Disordered Region (DISOPRED)
*********VKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSELDSNTLQIGHA*******
Disordered Region (DISEMBL)
MAGTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETE*********SELDSNTLQIGHAAVASANA
Disordered Region (DISPRO)
*AGTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDA*******TLQ*****VAS***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAGTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSELDSNTLQIGHAAVASANA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	197	2.2.26 [Sep-21-2011]
B0W429	500	Adenosine monophosphate-p	N/A	no	0.487	0.192	0.303	0.0009

>sp|B0W429|FICD_CULQU Adenosine monophosphate-protein transferase FICD homolog OS=Culex quinquefasciatus GN=CPIJ001789 PE=3 SV=1

 Score = 43.5 bits (101), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 6/102 (5%)

Query: 63  GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEIL 122
           G D + +  +   M   +P +P  L+ Y +FL  S+QD+  A+ YY +A+  +P   E L
Sbjct: 136 GKDDKALRLFQHAMAL-SPRHPEILTKYGEFLEHSQQDIVTADHYYYQALTVNPSHSEAL 194

Query: 123 SQYAKLVWEL-HNDQDRAATYYERAVHASPEDSHVHASYAGF 163
           +   +    + H DQ R    +ER        S VHA  AG 
Sbjct: 195 ANRQRTASIVEHLDQKR----FERLDKKRDALSSVHALDAGL 232

Adenylyltransferase that mediates the addition of adenosine 5'-monophosphate (AMP) to specific residues of target proteins.
Culex quinquefasciatus (taxid: 7176)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: nEC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	197
255571188	373	conserved hypothetical protein [Ricinus	1.0	0.528	0.599	2e-60
224065543	390	predicted protein [Populus trichocarpa]	0.989	0.5	0.578	4e-54
356505064	357	PREDICTED: uncharacterized protein LOC10	0.974	0.537	0.603	8e-53
357510173	353	TPR domain protein [Medicago truncatula]	0.837	0.467	0.621	3e-49
357510319	363	TPR domain protein [Medicago truncatula]	0.857	0.465	0.587	1e-46
388492212	167	unknown [Lotus japonicus]	0.771	0.910	0.660	5e-46
147794067	383	hypothetical protein VITISV_015562 [Viti	0.736	0.378	0.657	1e-44
388506322	141	unknown [Medicago truncatula]	0.568	0.794	0.761	7e-44
300078524	125	hypothetical protein [Jatropha curcas]	0.624	0.984	0.701	8e-42
147859668	521	hypothetical protein VITISV_026571 [Viti	0.883	0.333	0.522	4e-41

>gi|255571188|ref|XP_002526544.1| conserved hypothetical protein [Ricinus communis] gi|223534105|gb|EEF35822.1| conserved hypothetical protein [Ricinus communis]

 Score =  237 bits (604), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 124/207 (59%), Positives = 148/207 (71%), Gaps = 10/207 (4%)

Query: 1   MAGTALSEEVK--VMEALWNAGFEQERGTVGQEMYLAKGLGV-GGRGGRGGGTGGGGSG- 56
           M    LS E    VME  WN GFE+ERG + +EM+LA+GLG+ GG   R G    GG G 
Sbjct: 167 MGNMVLSSEQLGLVMERSWNMGFEEERGLISEEMHLARGLGIDGGTSDRNGTGNFGGGGG 226

Query: 57  ------FYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSR 110
                  +  G GGD QG EEYYKKM++ENPGNPLFL NYAQFLYQ+K+DL +AEEYYSR
Sbjct: 227 GGRDEFHWTDGDGGDMQGTEEYYKKMLQENPGNPLFLRNYAQFLYQTKRDLQRAEEYYSR 286

Query: 111 AILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEED 170
           AILADP DG+ILSQYAKLVWELH+D D+A++Y++RAV ASPEDSHVHA+YA FLWETEED
Sbjct: 287 AILADPKDGDILSQYAKLVWELHHDLDKASSYFKRAVQASPEDSHVHAAYASFLWETEED 346

Query: 171 NDECDAPSELDSNTLQIGHAAVASANA 197
            DE   P + D+         +AS +A
Sbjct: 347 EDESVVPRDFDAMPPHFYEGLMASTSA 373

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065543|ref|XP_002301849.1| predicted protein [Populus trichocarpa] gi|222843575|gb|EEE81122.1| predicted protein [Populus trichocarpa]

 Score =  216 bits (550), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 118/204 (57%), Positives = 140/204 (68%), Gaps = 9/204 (4%)

Query: 1   MAGTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPA 60
           M    L+EEV+VM+ +W+  FE +R  + +EM+LA+G G+       GG GG G      
Sbjct: 181 MENMVLTEEVRVMDRIWSVNFEGKREWISEEMHLARGPGIDYGSNGNGGGGGYGGRSGGG 240

Query: 61  GS------GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILA 114
                   GGD  G EEYYKKMV+ENPGNPLFL NYAQFLYQ+K+DL  AEEYYSRAILA
Sbjct: 241 SGDEFDSGGGDMHGTEEYYKKMVQENPGNPLFLRNYAQFLYQTKRDLQGAEEYYSRAILA 300

Query: 115 DPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDND-- 172
           DP DGEILSQY KLVWELH DQDRA++Y+ER V ASPED HVHA+YA FLWETE+D+D  
Sbjct: 301 DPKDGEILSQYGKLVWELHQDQDRASSYFERGVQASPEDCHVHAAYASFLWETEDDDDDV 360

Query: 173 ECDA-PSELDSNTLQIGHAAVASA 195
           EC   P + D+        AVA A
Sbjct: 361 ECKVPPKDFDAKPPHFHEGAVAFA 384

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356505064|ref|XP_003521312.1| PREDICTED: uncharacterized protein LOC100788436 [Glycine max]

 Score =  212 bits (539), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 122/202 (60%), Positives = 143/202 (70%), Gaps = 10/202 (4%)

Query: 3   GTALSEEVKVMEALWNAGF-EQERGTVGQEMYLAKGLGV---GGRGGRGGGTGGGGSGFY 58
           G   SEEV+V + +    F +QE  + G+EMYLAKGLGV   G   G   G GGGG    
Sbjct: 159 GVIFSEEVRVKDGVCRVSFGDQEEVSSGKEMYLAKGLGVECCGDGIGGCRGGGGGGGDHN 218

Query: 59  PAGSGGD---SQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILAD 115
           P GSGG+     GVEEYYKKMV ENPG+PLFL NYA FLYQ KQD   AEEYYSRAILAD
Sbjct: 219 PLGSGGNDGERHGVEEYYKKMVRENPGDPLFLRNYANFLYQCKQDREGAEEYYSRAILAD 278

Query: 116 PGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECD 175
           P DGE+LSQY KLVWELH++Q+RA++Y+ERAV ASPEDSHV A+YA FLW+TEED D  +
Sbjct: 279 PNDGEVLSQYGKLVWELHHNQERASSYFERAVQASPEDSHVQAAYASFLWDTEEDEDGIN 338

Query: 176 APSELDSNTLQIGHAAVASANA 197
            P  L  ++ Q    AVA+A A
Sbjct: 339 EPQSLPPHSHQ---GAVATAGA 357

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357510173|ref|XP_003625375.1| TPR domain protein [Medicago truncatula] gi|355500390|gb|AES81593.1| TPR domain protein [Medicago truncatula]

 Score =  200 bits (508), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 110/177 (62%), Positives = 131/177 (74%), Gaps = 12/177 (6%)

Query: 2   AGTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGT-----GGGGSG 56
           +G  +++EVK  + ++   F +E     +EMYLAKGLGV G GG  GG         GSG
Sbjct: 159 SGVVVNDEVK--DRVFRVSFGEEGKVGNKEMYLAKGLGVDGIGGCSGGNGGGDYNSMGSG 216

Query: 57  FYPAGSGGDS-QGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILAD 115
               G+ GDS  GVEEYYKKMV++NPGNPLFL NYAQFLYQ KQD   AEEYYSRAILAD
Sbjct: 217 ----GNDGDSNHGVEEYYKKMVQQNPGNPLFLRNYAQFLYQCKQDREGAEEYYSRAILAD 272

Query: 116 PGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDND 172
           P DGE+LSQY KLVWELH D++RA++Y+ERAV ASP+DSHV A+YA FLW+TEED D
Sbjct: 273 PNDGEVLSQYGKLVWELHRDEERASSYFERAVQASPDDSHVQAAYASFLWDTEEDED 329

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357510319|ref|XP_003625448.1| TPR domain protein [Medicago truncatula] gi|355500463|gb|AES81666.1| TPR domain protein [Medicago truncatula]

 Score =  191 bits (486), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 107/182 (58%), Positives = 127/182 (69%), Gaps = 13/182 (7%)

Query: 1   MAGTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVG--------GRGGRGGGTGG 52
           M     SEEV   + +    F++E      EMYLAKGLGV         G    GG  GG
Sbjct: 162 MNRMMQSEEV---DRVCRVSFDEEGEFGDNEMYLAKGLGVDFCGGDGIGGGCRGGGNGGG 218

Query: 53  GGSGFYPAGSGGDS--QGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSR 110
             +      + GD+   GVE+YYKKMV++NPGNPLFL NYAQFLYQ KQDL  AEEYYSR
Sbjct: 219 DYNSMDSERNDGDNNNHGVEQYYKKMVQQNPGNPLFLRNYAQFLYQCKQDLEGAEEYYSR 278

Query: 111 AILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEED 170
           AILADP DGE+LSQY KLVWELH+D++RA++Y+ERAV ASPEDSHV A+YA FLW+TEE+
Sbjct: 279 AILADPNDGEVLSQYGKLVWELHHDEERASSYFERAVQASPEDSHVQAAYASFLWDTEEE 338

Query: 171 ND 172
           ND
Sbjct: 339 ND 340

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388492212|gb|AFK34172.1| unknown [Lotus japonicus]

 Score =  189 bits (480), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 105/159 (66%), Positives = 119/159 (74%), Gaps = 7/159 (4%)

Query: 32  MYLAKGLGVGG-------RGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNP 84
           MYLAKGLGVG          G GGG GG  S     G+ GD  GVEEYYKKMVEE+PG+P
Sbjct: 1   MYLAKGLGVGSFGDGMGGCRGGGGGGGGDHSSMGSGGNDGDMHGVEEYYKKMVEESPGDP 60

Query: 85  LFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYE 144
           LFL NYAQFLYQ K DL  AEEYYSRAILADP DGE+LSQY KLVWELH+D++RA++Y+E
Sbjct: 61  LFLRNYAQFLYQCKHDLKGAEEYYSRAILADPKDGEVLSQYGKLVWELHHDEERASSYFE 120

Query: 145 RAVHASPEDSHVHASYAGFLWETEEDNDECDAPSELDSN 183
           RA  ASPEDSHVHA+YA FLW+TEE  D C+    L S+
Sbjct: 121 RAAQASPEDSHVHAAYASFLWDTEEGEDGCNESQCLPSH 159

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147794067|emb|CAN77841.1| hypothetical protein VITISV_015562 [Vitis vinifera]

 Score =  185 bits (469), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 100/152 (65%), Positives = 111/152 (73%), Gaps = 7/152 (4%)

Query: 8   EEVKVM----EALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSG 63
           E +K+M        N  FE+E+  VG EMYLA+G GV G    G G GGGG  F P GSG
Sbjct: 231 ENIKMMGIRENGSRNVAFEEEKEVVGSEMYLARGAGVSGVDFGGRGGGGGGGDFTPRGSG 290

Query: 64  G---DSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGE 120
           G   D  GVEEYYK+M+EENP NPLFL NYAQFLYQSK DL  AEEY  RAILADP DGE
Sbjct: 291 GESGDRPGVEEYYKRMLEENPSNPLFLRNYAQFLYQSKHDLQAAEEYLCRAILADPRDGE 350

Query: 121 ILSQYAKLVWELHNDQDRAATYYERAVHASPE 152
           ILSQYAKLVWELH DQDRA++Y+ERAV A+PE
Sbjct: 351 ILSQYAKLVWELHRDQDRASSYFERAVQAAPE 382

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388506322|gb|AFK41227.1| unknown [Medicago truncatula]

 Score =  182 bits (462), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 86/113 (76%), Positives = 98/113 (86%), Gaps = 1/113 (0%)

Query: 61  GSGGDS-QGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDG 119
           G+ GDS  GVEEYYKKMV++NPGNPLFL NYAQFLYQ KQD   AEEYYSRAILADP DG
Sbjct: 5   GNDGDSNHGVEEYYKKMVQQNPGNPLFLRNYAQFLYQCKQDREGAEEYYSRAILADPNDG 64

Query: 120 EILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDND 172
           E+LSQY KLVWELH D++RA++Y+ERAV ASP+DSHV A+YA FLW+TEED D
Sbjct: 65  EVLSQYGKLVWELHRDEERASSYFERAVQASPDDSHVQAAYASFLWDTEEDED 117

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|300078524|gb|ADJ67173.1| hypothetical protein [Jatropha curcas]

 Score =  175 bits (444), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 87/124 (70%), Positives = 98/124 (79%), Gaps = 1/124 (0%)

Query: 74  KKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELH 133
           KKM++ENPGNPL L NYA FLYQS++DL  AEEYY RAILADP DGEILSQYAKLVWELH
Sbjct: 3   KKMLQENPGNPLILGNYAHFLYQSEKDLKGAEEYYLRAILADPKDGEILSQYAKLVWELH 62

Query: 134 NDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSELDSNTLQIGHAAVA 193
           NDQD A+ Y+ERAV ASPEDSHVHA+YA FLWETEED D+   P++ +  T      AVA
Sbjct: 63  NDQDIASAYFERAVQASPEDSHVHAAYASFLWETEEDEDDYGVPTDFEPITPHF-RGAVA 121

Query: 194 SANA 197
           S  A
Sbjct: 122 STGA 125

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147859668|emb|CAN83109.1| hypothetical protein VITISV_026571 [Vitis vinifera]

 Score =  172 bits (437), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 94/180 (52%), Positives = 122/180 (67%), Gaps = 6/180 (3%)

Query: 18  NAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMV 77
           N   E E       ++ A GLG+          G  G   + + +  +   VEE+YKKMV
Sbjct: 348 NLDQEDENKPASPSLHPAAGLGIDV-----AACGSVGCVDFSSINASEISKVEEHYKKMV 402

Query: 78  EENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQD 137
           EENP NPLFL NYAQFL+Q+K +L +AEEYYSRAILADPGDGEI+SQYAKL WELH+D+D
Sbjct: 403 EENPCNPLFLRNYAQFLFQTKGELQQAEEYYSRAILADPGDGEIMSQYAKLAWELHHDRD 462

Query: 138 RAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSELDSNTLQIGHAAVASANA 197
           +A +Y+++AV A+P DSHV A+YA FLWET+E+ +E +A S  D   + + H A  SANA
Sbjct: 463 KALSYFKQAVQATPGDSHVLAAYARFLWETDEEEEENNA-SMQDHIQVSLFHEAATSANA 521

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	197
TAIR|locus:2149314	290	AT5G20190 "AT5G20190" [Arabido	0.517	0.351	0.558	2.1e-29
TAIR|locus:2141030	274	AT4G17940 "AT4G17940" [Arabido	0.583	0.419	0.486	1.9e-28
TAIR|locus:2016229	305	AT1G80130 [Arabidopsis thalian	0.604	0.390	0.479	9.4e-27
TAIR|locus:2197768	310	TPR4 "tetratricopeptide repeat	0.614	0.390	0.475	8.4e-26
TAIR|locus:2127781	238	AT4G32340 "AT4G32340" [Arabido	0.532	0.441	0.518	2.2e-25
TAIR|locus:2025067	552	AT1G07280 "AT1G07280" [Arabido	0.578	0.206	0.432	5e-19
TAIR|locus:2060669	536	AT2G29670 [Arabidopsis thalian	0.527	0.194	0.419	2e-17
TAIR|locus:2075616	515	AT3G47080 [Arabidopsis thalian	0.497	0.190	0.408	8.8e-14

TAIR|locus:2149314 AT5G20190 "AT5G20190" [Arabidopsis thaliana (taxid:3702)]

 Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
 Identities = 57/102 (55%), Positives = 77/102 (75%)

Query:    72 YYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWE 131
             +Y+KM+E NPGN +FLSNYA+FL + ++D  KAEEY  RAIL  P DG +L+ YA+LVW+
Sbjct:   159 HYRKMIEANPGNGIFLSNYAKFLKEVRKDYLKAEEYCGRAILVSPNDGNVLAMYAELVWK 218

Query:   132 LHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDE 173
             +H D  RA  Y+ +AV A+PED +V ASYA FLW+ EE+ +E
Sbjct:   219 IHKDSSRAENYFNQAVAAAPEDCYVQASYARFLWDAEEEEEE 260

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2141030 AT4G17940 "AT4G17940" [Arabidopsis thaliana (taxid:3702)]

 Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
 Identities = 56/115 (48%), Positives = 78/115 (67%)

Query:    65 DSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQ 124
             D   + +YY++M+  NP N L L NY +FLY+ ++D   AEEYY RAIL +PGDGE LS 
Sbjct:   146 DKSKIGDYYREMLRSNPNNSLLLMNYGKFLYEVEKDAEGAEEYYGRAILENPGDGEALSM 205

Query:   125 YAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSE 179
             Y +L+WE   D+ RA  Y+++AV+ASP D  V  SYA F+WE E+D+D+ +   E
Sbjct:   206 YGRLIWETKRDEKRAQGYFDQAVNASPNDCMVLGSYARFMWEAEDDDDDDEEEEE 260

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2016229 AT1G80130 [Arabidopsis thaliana (taxid:3702)]

 Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
 Identities = 58/121 (47%), Positives = 81/121 (66%)

Query:    70 EEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLV 129
             + YY++M++ NPGN L   NYA+FL + K D+ KAEEY  RAIL +  DG +LS YA L+
Sbjct:   166 DTYYREMIDSNPGNSLLTGNYAKFLKEVKGDMKKAEEYCERAILGNTNDGNVLSLYADLI 225

Query:   130 WELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSELDSNTL-QIG 188
                H D+ RA +YY++AV  SPED +V ASYA FLW+ +ED ++ +A  E + N   + G
Sbjct:   226 LHNHQDRQRAHSYYKQAVKMSPEDCYVQASYARFLWDVDEDEED-EALGEEEENLSDETG 284

Query:   189 H 189
             H
Sbjct:   285 H 285

GO:0016020 "membrane" evidence=IDA

GO:0006979 "response to oxidative stress" evidence=IMP

TAIR|locus:2197768 TPR4 "tetratricopeptide repeat 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
 Identities = 58/122 (47%), Positives = 81/122 (66%)

Query:    65 DSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQ 124
             D +   +YYK M+EE P +PL L NYA+FL + K DL  AEEYY +  + +P DG  L+ 
Sbjct:   117 DDKNCGDYYKGMLEEYPLHPLLLKNYAKFL-EYKGDLSGAEEYYHKCTVVEPSDGVALAN 175

Query:   125 YAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSELDSNT 184
             Y +LV +LH D+ +A +Y+ERAV ASP+DS V A+YA FLWE   D+D+ D   + D ++
Sbjct:   176 YGRLVMKLHQDEAKAMSYFERAVQASPDDSIVLAAYASFLWEINADDDDEDDDEDDDESS 235

Query:   185 LQ 186
              Q
Sbjct:   236 GQ 237

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2127781 AT4G32340 "AT4G32340" [Arabidopsis thaliana (taxid:3702)]

 Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
 Identities = 55/106 (51%), Positives = 78/106 (73%)

Query:    69 VEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPG-DGEILSQYAK 127
             V+ YY++M++  PG+ L LSNYA+FL + K D  KAEEY  RA+L++ G DGE+LS Y  
Sbjct:   110 VDGYYEEMIQRYPGDTLLLSNYARFLKEVKGDGRKAEEYCERAMLSESGRDGELLSMYGD 169

Query:   128 LVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDE 173
             L+W+ H D  RA +YY++AV +SP+D +V ASYA FLW+ EE+ +E
Sbjct:   170 LIWKNHGDGVRAQSYYDQAVQSSPDDCNVLASYARFLWDAEEEVEE 215

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2025067 AT1G07280 "AT1G07280" [Arabidopsis thaliana (taxid:3702)]

 Score = 236 (88.1 bits), Expect = 5.0e-19, P = 5.0e-19
 Identities = 51/118 (43%), Positives = 69/118 (58%)

Query:    70 EEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLV 129
             E  Y+  + + PGN L L+NYAQFLY    D  +AE+Y+ RA  A+P D E L++YA  +
Sbjct:   436 ELLYQTGLSQEPGNVLLLANYAQFLYLIIHDYDRAEKYFKRAAKAEPADAEALNKYATFL 495

Query:   130 WELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDEC---DAPSELDSNT 184
             W   ND  RA   Y  A+ A P +S   A+YA FLW T  D + C   DAPS+ ++ T
Sbjct:   496 WRARNDIWRAEETYLEAISADPTNSVYSANYAHFLWNTGGD-ETCFPLDAPSQQNNTT 552

GO:0008150 "biological_process" evidence=ND

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

TAIR|locus:2060669 AT2G29670 [Arabidopsis thaliana (taxid:3702)]

 Score = 221 (82.9 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 44/105 (41%), Positives = 60/105 (57%)

Query:    70 EEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLV 129
             E  Y+  + + P NPL L+NYAQFLY    D  +AEEY+ RA+  +P D E  S+YA  +
Sbjct:   421 ELMYQTELSQEPNNPLLLANYAQFLYLVSNDHDRAEEYFKRAVGVEPKDAEAFSKYATFL 480

Query:   130 WELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDEC 174
             W   +D   A   +  A+ A P +S+  A+YA FLW T  D D C
Sbjct:   481 WRARDDLWAAEETFLEAIDADPTNSYYAANYANFLWNTGGD-DTC 524

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2075616 AT3G47080 [Arabidopsis thaliana (taxid:3702)]

 Score = 187 (70.9 bits), Expect = 8.8e-14, P = 8.8e-14
 Identities = 40/98 (40%), Positives = 56/98 (57%)

Query:    70 EEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLV 129
             E  YK  + + P N L L+NYAQFLY   QD  +AE  + +AI ++  D E  S+YA  +
Sbjct:   401 ELLYKIGLAQEPDNHLLLANYAQFLYLVTQDHERAENCFKKAIESEDVDAETYSKYAIFL 460

Query:   130 WELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWET 167
             W++ ND   A   +  A+ A P +S   A+YA FLW T
Sbjct:   461 WKVRNDLWAAEENFLEAISADPTNSFYAANYANFLWNT 498


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.310   0.127   0.367    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      197       169   0.00082  108 3  11 23  0.49    32
                                                     31  0.47    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  8
  No. of states in DFA:  591 (63 KB)
  Total size of DFA:  166 KB (2097 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.27u 0.22s 16.49t   Elapsed:  00:00:01
  Total cpu time:  16.27u 0.22s 16.49t   Elapsed:  00:00:01
  Start:  Fri May 10 10:01:38 2013   End:  Fri May 10 10:01:39 2013

GO:0005634 "nucleus" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	197
pfam13414	69	pfam13414, TPR_11, TPR repeat	9e-08
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	2e-07
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	2e-06
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	2e-06
pfam13414	69	pfam13414, TPR_11, TPR repeat	3e-05
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	2e-04
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	2e-04
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	3e-04
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	8e-04
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	0.004

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 46.9 bits (112), Expect = 9e-08
 Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 1/69 (1%)

Query: 83  NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATY 142
           N   L N    L++   D  +A E Y +A+  DP + E     A    +L  D + A   
Sbjct: 2   NAEALKNLGNALFKLG-DYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALED 60

Query: 143 YERAVHASP 151
            E+A+   P
Sbjct: 61  LEKALELDP 69

Length = 69

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 47.0 bits (112), Expect = 2e-07
 Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 2/89 (2%)

Query: 64  GDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILS 123
           GD     EYY+K +E +P N     N A   Y+      +A E Y +A+  DP + +   
Sbjct: 14  GDYDEALEYYEKALELDPDNADAYYNLAAAYYKLG-KYEEALEDYEKALELDPDNAKAYY 72

Query: 124 QYAKLVWELHNDQDRAATYYERAVHASPE 152
                 ++L    + A   YE+A+   P 
Sbjct: 73  NLGLAYYKL-GKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 35/120 (29%), Positives = 55/120 (45%), Gaps = 6/120 (5%)

Query: 63  GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEIL 122
             D     ++Y+ +V++ P N + L+N A +LY  +   P+A EY  RA+   P    IL
Sbjct: 783 QKDYDKAIKHYQTVVKKAPDNAVVLNNLA-WLYL-ELKDPRALEYAERALKLAPNIPAIL 840

Query: 123 SQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSELDS 182
                L+ E   + DRA     +AV+ +PE + +    A  L  T       +A  ELD 
Sbjct: 841 DTLGWLLVE-KGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKA---EARKELDK 896

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 17/90 (18%), Positives = 38/90 (42%), Gaps = 2/90 (2%)

Query: 64  GDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILS 123
           GD     E ++K +   P      +N A+   Q   +   A + + + +  DP +   + 
Sbjct: 479 GDLAKAREAFEKALSIEPDFFPAAANLARIDIQEG-NPDDAIQRFEKVLTIDPKNLRAIL 537

Query: 124 QYAKLVWELHNDQDRAATYYERAVHASPED 153
             A L +    +++ A  + E+A   +P++
Sbjct: 538 ALAGL-YLRTGNEEEAVAWLEKAAELNPQE 566

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 40.0 bits (94), Expect = 3e-05
 Identities = 14/47 (29%), Positives = 22/47 (46%)

Query: 70  EEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADP 116
            E Y+K +E +P N     N A    +  +D  +A E   +A+  DP
Sbjct: 23  IEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEKALELDP 69

Length = 69

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 40.6 bits (93), Expect = 2e-04
 Identities = 28/112 (25%), Positives = 47/112 (41%), Gaps = 1/112 (0%)

Query: 64  GDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILS 123
           G  +   E  +K ++ NP +          LY       +A EYY +A+  DP + E L 
Sbjct: 181 GRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALY 240

Query: 124 QYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECD 175
             A L+ EL    + A    E+A+   P+  ++  +    L E  E  ++ D
Sbjct: 241 NLALLLLEL-GRYEEALEALEKALELDPDLYNLGLALLLLLAEALELLEKAD 291

Length = 291

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 40.6 bits (93), Expect = 2e-04
 Identities = 24/112 (21%), Positives = 41/112 (36%), Gaps = 2/112 (1%)

Query: 64  GDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILS 123
           G  +   E  +K +  +P   L  +  A        D  +A E Y +A+  DP   E+  
Sbjct: 109 GKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAE 168

Query: 124 QYAKL--VWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDE 173
               L  + E     + A    E+A+  +P+D        G L+      +E
Sbjct: 169 ALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEE 220

Length = 291

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 40.5 bits (95), Expect = 3e-04
 Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 2/90 (2%)

Query: 74  KKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELH 133
           KK+ ++ P N   L N    +Y  K DL KA E + +A+  +P      +  A++     
Sbjct: 455 KKLEKKQPDNAS-LHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARID-IQE 512

Query: 134 NDQDRAATYYERAVHASPEDSHVHASYAGF 163
            + D A   +E+ +   P++     + AG 
Sbjct: 513 GNPDDAIQRFEKVLTIDPKNLRAILALAGL 542

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 37.0 bits (86), Expect = 8e-04
 Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 1/68 (1%)

Query: 94  LYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPED 153
           LY    D  +A EYY +A+  DP + +     A          + A   YE+A+   P++
Sbjct: 9   LYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAY-YKLGKYEEALEDYEKALELDPDN 67

Query: 154 SHVHASYA 161
           +  + +  
Sbjct: 68  AKAYYNLG 75

Length = 100

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 34.2 bits (79), Expect = 0.004
 Identities = 13/64 (20%), Positives = 22/64 (34%), Gaps = 2/64 (3%)

Query: 91  AQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHAS 150
           A+   ++  D  +A      A+   P   E L    + +         AA     A+ A 
Sbjct: 4   ARAALRAG-DYDEALAALEAALARYPLAAEALLLLGEALLRQ-GRLAEAAALLRAALAAD 61

Query: 151 PEDS 154
           P+D 
Sbjct: 62  PDDP 65

Length = 65

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	197
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.86
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.84
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.82
PRK15359	144	type III secretion system chaperone protein SscB;	99.8
KOG1126	638	consensus DNA-binding cell division cycle control	99.79
PRK12370	553	invasion protein regulator; Provisional	99.78
PRK11189	296	lipoprotein NlpI; Provisional	99.76
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.76
PRK11189	296	lipoprotein NlpI; Provisional	99.75
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.75
PRK12370	553	invasion protein regulator; Provisional	99.75
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.74
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.74
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.73
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.73
KOG1126	638	consensus DNA-binding cell division cycle control	99.73
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.73
PRK15359	144	type III secretion system chaperone protein SscB;	99.72
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.72
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.69
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.69
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.69
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.69
KOG0553	304	consensus TPR repeat-containing protein [General f	99.68
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.66
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.66
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.66
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.65
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.65
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.64
PLN02789	320	farnesyltranstransferase	99.64
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.64
PLN02789	320	farnesyltranstransferase	99.63
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.63
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.62
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.6
KOG1125	579	consensus TPR repeat-containing protein [General f	99.6
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.59
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.59
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.58
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.58
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.58
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.57
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.56
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.56
KOG0553	304	consensus TPR repeat-containing protein [General f	99.52
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.52
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.49
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.49
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.47
KOG1125	579	consensus TPR repeat-containing protein [General f	99.45
KOG3060	289	consensus Uncharacterized conserved protein [Funct	99.44
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.44
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.42
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.41
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.4
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.4
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.39
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.39
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.38
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.37
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.35
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.35
KOG1129	478	consensus TPR repeat-containing protein [General f	99.34
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.34
KOG3060	289	consensus Uncharacterized conserved protein [Funct	99.31
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.31
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.3
PRK14574	822	hmsH outer membrane protein; Provisional	99.29
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.28
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.28
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.28
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.27
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.27
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.27
KOG2076	895	consensus RNA polymerase III transcription factor	99.27
PRK11906	458	transcriptional regulator; Provisional	99.26
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.24
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.24
KOG1129	478	consensus TPR repeat-containing protein [General f	99.24
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.22
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.22
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.21
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.21
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.21
KOG2003	840	consensus TPR repeat-containing protein [General f	99.19
PRK14574	822	hmsH outer membrane protein; Provisional	99.19
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.18
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.18
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.18
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	99.17
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.16
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	99.16
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.16
PRK15331	165	chaperone protein SicA; Provisional	99.15
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	99.15
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.14
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.13
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.13
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.13
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	99.13
PF13371	73	TPR_9: Tetratricopeptide repeat	99.12
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	99.12
KOG2003	840	consensus TPR repeat-containing protein [General f	99.11
KOG2076	895	consensus RNA polymerase III transcription factor	99.11
PRK15331	165	chaperone protein SicA; Provisional	99.1
PRK11906	458	transcriptional regulator; Provisional	99.1
PRK10803	263	tol-pal system protein YbgF; Provisional	99.09
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	99.08
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.08
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	99.07
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	99.06
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.06
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.05
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.04
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.04
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.0
PF12688	120	TPR_5: Tetratrico peptide repeat	99.0
PRK10803	263	tol-pal system protein YbgF; Provisional	98.99
PF13371	73	TPR_9: Tetratricopeptide repeat	98.99
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.99
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.98
PF12688	120	TPR_5: Tetratrico peptide repeat	98.97
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.95
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.95
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.94
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.94
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.93
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.87
KOG4234	271	consensus TPR repeat-containing protein [General f	98.86
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.85
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.85
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.84
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.83
KOG0495	913	consensus HAT repeat protein [RNA processing and m	98.81
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.78
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.77
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.77
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.76
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.74
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.73
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	98.72
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.72
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.69
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.69
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.68
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.66
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.64
KOG4555	175	consensus TPR repeat-containing protein [Function	98.64
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.63
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.62
PF13428	44	TPR_14: Tetratricopeptide repeat	98.6
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.59
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.59
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	98.55
PF13431	34	TPR_17: Tetratricopeptide repeat	98.54
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.53
PF13428	44	TPR_14: Tetratricopeptide repeat	98.53
PLN03218	1060	maturation of RBCL 1; Provisional	98.53
PF13512	142	TPR_18: Tetratricopeptide repeat	98.51
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.5
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.48
PF13431	34	TPR_17: Tetratricopeptide repeat	98.48
KOG4555	175	consensus TPR repeat-containing protein [Function	98.47
PLN03077	857	Protein ECB2; Provisional	98.45
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	98.41
PLN03218	1060	maturation of RBCL 1; Provisional	98.41
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	98.4
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.39
KOG4234	271	consensus TPR repeat-containing protein [General f	98.38
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	98.38
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.37
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	98.37
PF13512	142	TPR_18: Tetratricopeptide repeat	98.37
PLN03077	857	Protein ECB2; Provisional	98.36
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.35
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.33
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.33
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.27
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.27
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.26
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.23
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.17
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	98.17
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.17
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.14
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	98.12
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	98.12
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.11
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	98.1
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	98.08
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.03
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	98.03
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.01
KOG2610	491	consensus Uncharacterized conserved protein [Funct	98.0
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.0
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.97
KOG4340	459	consensus Uncharacterized conserved protein [Funct	97.97
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	97.97
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.91
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	97.89
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.88
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.86
KOG3785	557	consensus Uncharacterized conserved protein [Funct	97.86
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	97.86
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.84
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.83
KOG4507	886	consensus Uncharacterized conserved protein, conta	97.82
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	97.8
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.8
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.79
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.78
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.76
PRK04841	903	transcriptional regulator MalT; Provisional	97.75
KOG1915	677	consensus Cell cycle control protein (crooked neck	97.72
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.71
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.71
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	97.71
KOG2471	696	consensus TPR repeat-containing protein [General f	97.7
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.59
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	97.56
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.55
PRK04841	903	transcriptional regulator MalT; Provisional	97.55
PRK10941	269	hypothetical protein; Provisional	97.53
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	97.52
COG5191	435	Uncharacterized conserved protein, contains HAT (H	97.51
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	97.46
KOG1915	677	consensus Cell cycle control protein (crooked neck	97.4
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	97.39
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.38
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	97.27
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.27
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.26
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	97.24
KOG3785	557	consensus Uncharacterized conserved protein [Funct	97.22
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.22
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	97.2
KOG0529	421	consensus Protein geranylgeranyltransferase type I	97.2
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.18
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	97.16
COG4976	287	Predicted methyltransferase (contains TPR repeat)	97.16
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.1
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.05
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	97.04
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.97
KOG2610	491	consensus Uncharacterized conserved protein [Funct	96.97
PRK10941	269	hypothetical protein; Provisional	96.91
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	96.9
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.88
COG4105	254	ComL DNA uptake lipoprotein [General function pred	96.88
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	96.87
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	96.87
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	96.85
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.83
KOG1941	518	consensus Acetylcholine receptor-associated protei	96.82
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	96.81
KOG1310	758	consensus WD40 repeat protein [General function pr	96.76
COG3118	304	Thioredoxin domain-containing protein [Posttransla	96.73
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	96.67
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	96.64
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	96.62
KOG1585	308	consensus Protein required for fusion of vesicles	96.62
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	96.61
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	96.48
KOG0529	421	consensus Protein geranylgeranyltransferase type I	96.45
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	96.41
KOG1586	288	consensus Protein required for fusion of vesicles	96.33
KOG1586	288	consensus Protein required for fusion of vesicles	96.32
COG4976	287	Predicted methyltransferase (contains TPR repeat)	96.23
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	96.21
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	96.06
KOG1550	552	consensus Extracellular protein SEL-1 and related	95.97
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	95.93
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	95.93
COG2912	269	Uncharacterized conserved protein [Function unknow	95.87
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	95.82
KOG2047	835	consensus mRNA splicing factor [RNA processing and	95.78
KOG2471	696	consensus TPR repeat-containing protein [General f	95.68
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	95.65
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	95.58
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	95.58
KOG3364	149	consensus Membrane protein involved in organellar	95.55
KOG2300	629	consensus Uncharacterized conserved protein [Funct	95.55
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	95.5
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	95.49
KOG1258	577	consensus mRNA processing protein [RNA processing	95.47
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	95.38
COG3898	531	Uncharacterized membrane-bound protein [Function u	95.29
COG5191	435	Uncharacterized conserved protein, contains HAT (H	95.26
KOG2047	835	consensus mRNA splicing factor [RNA processing and	95.24
KOG1941	518	consensus Acetylcholine receptor-associated protei	95.24
KOG1310	758	consensus WD40 repeat protein [General function pr	95.18
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	95.11
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	95.04
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	94.91
KOG1585	308	consensus Protein required for fusion of vesicles	94.82
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	94.74
COG2912	269	Uncharacterized conserved protein [Function unknow	94.72
KOG1550	552	consensus Extracellular protein SEL-1 and related	94.64
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	94.58
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	94.57
COG3898	531	Uncharacterized membrane-bound protein [Function u	94.46
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	94.31
KOG4507	886	consensus Uncharacterized conserved protein, conta	94.17
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	94.15
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	94.12
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	94.11
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	94.06
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	93.64
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	93.61
KOG3364	149	consensus Membrane protein involved in organellar	93.56
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	93.53
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	93.41
COG3629	280	DnrI DNA-binding transcriptional activator of the	93.2
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	93.04
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	92.99
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	92.79
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	92.76
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	92.61
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	92.48
KOG4814	872	consensus Uncharacterized conserved protein [Funct	92.43
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	92.4
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	92.38
KOG4814	872	consensus Uncharacterized conserved protein [Funct	91.83
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	91.6
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	91.46
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	91.33
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	91.06
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	90.91
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	90.76
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	90.44
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	90.42
KOG1258	577	consensus mRNA processing protein [RNA processing	90.4
COG3947	361	Response regulator containing CheY-like receiver a	89.88
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	89.73
KOG4014	248	consensus Uncharacterized conserved protein (conta	89.71
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	89.17
KOG3807	556	consensus Predicted membrane protein ST7 (tumor su	88.75
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	87.93
KOG4014	248	consensus Uncharacterized conserved protein (conta	87.85
COG3629	280	DnrI DNA-binding transcriptional activator of the	87.75
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	87.18
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	86.78
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	86.63
PF11846	193	DUF3366: Domain of unknown function (DUF3366); Int	86.61
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	84.63
PF12854	34	PPR_1: PPR repeat	84.56
COG4455	273	ImpE Protein of avirulence locus involved in tempe	84.47
PF01239	31	PPTA: Protein prenyltransferase alpha subunit repe	84.27
COG3947	361	Response regulator containing CheY-like receiver a	83.99
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	83.73
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	83.5
PF13226	277	DUF4034: Domain of unknown function (DUF4034)	83.43
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	83.35
KOG2041	1189	consensus WD40 repeat protein [General function pr	82.66
PF11846	193	DUF3366: Domain of unknown function (DUF3366); Int	82.3
KOG0128	881	consensus RNA-binding protein SART3 (RRM superfami	81.76
PF02184	32	HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107	81.33
PF00244	236	14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14	81.3
COG4455	273	ImpE Protein of avirulence locus involved in tempe	81.25
COG4941	415	Predicted RNA polymerase sigma factor containing a	81.1
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	81.06
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	81.06
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	80.4

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.86  E-value=8.7e-22  Score=168.73  Aligned_cols=175  Identities=17%  Similarity=0.132  Sum_probs=100.2

Q ss_pred             CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCC--------------CCCCCCCCCcccCCCCCHHH
Q 029199            3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGG--------------GTGGGGSGFYPAGSGGDSQG   68 (197)
Q Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~--------------~~~~~~~~~~~~~~~g~~~~   68 (197)
                      |.++...|....||.-|-++...+|+=+..|+..|.++...+.++.              -+...++.+..+...|..+-
T Consensus       225 g~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldl  304 (966)
T KOG4626|consen  225 GCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDL  304 (966)
T ss_pred             chHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHH
Confidence            3444444555555555555555555555555555544444433322              01122223334444566666


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 029199           69 VEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVH  148 (197)
Q Consensus        69 A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~  148 (197)
                      |+..|++++.++|+++.++.|+|+.+.. .|+..+|+.+|.++|.+.|+.+++++|+|.++.+++. +++|...|+++++
T Consensus       305 AI~~Ykral~~~P~F~~Ay~NlanALkd-~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~-~e~A~~ly~~al~  382 (966)
T KOG4626|consen  305 AIDTYKRALELQPNFPDAYNNLANALKD-KGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGK-IEEATRLYLKALE  382 (966)
T ss_pred             HHHHHHHHHhcCCCchHHHhHHHHHHHh-ccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcc-chHHHHHHHHHHh
Confidence            6666666666666666666666666655 6666666666666666666666666666666666554 5666666666666


Q ss_pred             hCCCCHHHHHHHHHHHHHcCCccccccCCCc
Q 029199          149 ASPEDSHVHASYAGFLWETEEDNDECDAPSE  179 (197)
Q Consensus       149 ~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~  179 (197)
                      ..|+-..++.|+|.+|.++|++++|+..|++
T Consensus       383 v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Yke  413 (966)
T KOG4626|consen  383 VFPEFAAAHNNLASIYKQQGNLDDAIMCYKE  413 (966)
T ss_pred             hChhhhhhhhhHHHHHHhcccHHHHHHHHHH
Confidence            6666666666666666666666666555555

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.84  E-value=4.2e-22  Score=170.62  Aligned_cols=175  Identities=14%  Similarity=0.070  Sum_probs=120.7

Q ss_pred             CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCC-------C-CCCCCCCCCCc------ccCCCCCHHH
Q 029199            3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGR-------G-GGTGGGGSGFY------PAGSGGDSQG   68 (197)
Q Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~-------~-~~~~~~~~~~~------~~~~~g~~~~   68 (197)
                      |+.+..+||..||-.+|.++++..|.=+-.|-..|-.+..-|..       . -...+|.+.++      .+...+.+++
T Consensus       191 gnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~  270 (966)
T KOG4626|consen  191 GNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDR  270 (966)
T ss_pred             hHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchH
Confidence            67788888888888888888888886666666655555444321       1 13445554433      3333466666


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 029199           69 VEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVH  148 (197)
Q Consensus        69 A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~  148 (197)
                      |+.+|++|+.+.|+++.++-|+|.+|+. +|+.+-|+.+|++++++.|+.+++++|+|.++-..|. ..+|.++|.++|.
T Consensus       271 Avs~Y~rAl~lrpn~A~a~gNla~iYye-qG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~-V~ea~~cYnkaL~  348 (966)
T KOG4626|consen  271 AVSCYLRALNLRPNHAVAHGNLACIYYE-QGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGS-VTEAVDCYNKALR  348 (966)
T ss_pred             HHHHHHHHHhcCCcchhhccceEEEEec-cccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccc-hHHHHHHHHHHHH
Confidence            6666666666666666666666655555 6777777777777777777777777777777777663 7777777777777


Q ss_pred             hCCCCHHHHHHHHHHHHHcCCccccccCCCc
Q 029199          149 ASPEDSHVHASYAGFLWETEEDNDECDAPSE  179 (197)
Q Consensus       149 ~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~  179 (197)
                      +.|+++++.+|+|.++.++|++++|...|..
T Consensus       349 l~p~hadam~NLgni~~E~~~~e~A~~ly~~  379 (966)
T KOG4626|consen  349 LCPNHADAMNNLGNIYREQGKIEEATRLYLK  379 (966)
T ss_pred             hCCccHHHHHHHHHHHHHhccchHHHHHHHH
Confidence            7777777777777777777777777666655

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.82  E-value=9e-20  Score=162.62  Aligned_cols=156  Identities=19%  Similarity=0.178  Sum_probs=142.7

Q ss_pred             CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCC
Q 029199            3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPG   82 (197)
Q Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~   82 (197)
                      |.++-..|++.+|+..|..+++.+|..+..++..|..+..                    .|++++|+..|+++++++|+
T Consensus       338 g~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~--------------------~g~~~eA~~~~~~al~~~p~  397 (615)
T TIGR00990       338 GTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLE--------------------LGDPDKAEEDFDKALKLNSE  397 (615)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH--------------------CCCHHHHHHHHHHHHHhCCC
Confidence            5566677888888888888888888888888888877665                    49999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 029199           83 NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAG  162 (197)
Q Consensus        83 ~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  162 (197)
                      ++.+|+++|.+++. .|++++|+.+|+++++++|++..++.++|.+++.+|+ +++|+..|+++++..|+++.++..+|.
T Consensus       398 ~~~~~~~lg~~~~~-~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~-~~eA~~~~~~al~~~P~~~~~~~~lg~  475 (615)
T TIGR00990       398 DPDIYYHRAQLHFI-KGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGS-IASSMATFRRCKKNFPEAPDVYNYYGE  475 (615)
T ss_pred             CHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence            99999999988887 9999999999999999999999999999999999885 999999999999999999999999999


Q ss_pred             HHHHcCCccccccCCCcc
Q 029199          163 FLWETEEDNDECDAPSEL  180 (197)
Q Consensus       163 ~~~~~g~~~ea~~~~~~~  180 (197)
                      ++..+|++++|+..|++.
T Consensus       476 ~~~~~g~~~~A~~~~~~A  493 (615)
T TIGR00990       476 LLLDQNKFDEAIEKFDTA  493 (615)
T ss_pred             HHHHccCHHHHHHHHHHH
Confidence            999999999998888874

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.80  E-value=4.2e-19  Score=130.70  Aligned_cols=104  Identities=14%  Similarity=0.078  Sum_probs=98.3

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 029199           63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATY  142 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~  142 (197)
                      .|++++|+.+|++++.++|.+..+|.++|.++.. .|++++|+.+|+++++++|+++.+++++|.++..+|+ +++|+..
T Consensus        37 ~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~-~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~-~~eAi~~  114 (144)
T PRK15359         37 EGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMM-LKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGE-PGLAREA  114 (144)
T ss_pred             cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-HhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCC-HHHHHHH
Confidence            5999999999999999999999999999988887 9999999999999999999999999999999999885 9999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcC
Q 029199          143 YERAVHASPEDSHVHASYAGFLWETE  168 (197)
Q Consensus       143 ~~~al~~~p~~~~~~~~la~~~~~~g  168 (197)
                      |+++++++|+++..+.+++.+...++
T Consensus       115 ~~~Al~~~p~~~~~~~~~~~~~~~l~  140 (144)
T PRK15359        115 FQTAIKMSYADASWSEIRQNAQIMVD  140 (144)
T ss_pred             HHHHHHhCCCChHHHHHHHHHHHHHH
Confidence            99999999999999999999887653

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.79  E-value=2.4e-19  Score=154.46  Aligned_cols=157  Identities=17%  Similarity=0.190  Sum_probs=141.4

Q ss_pred             CCcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCC
Q 029199            2 AGTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENP   81 (197)
Q Consensus         2 ~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P   81 (197)
                      .||.||=.+.+..||.+|..++..+|..+-.|--.|.....                    ..++|.|..+|++||..+|
T Consensus       427 ~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~--------------------~ee~d~a~~~fr~Al~~~~  486 (638)
T KOG1126|consen  427 LGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIA--------------------TEEFDKAMKSFRKALGVDP  486 (638)
T ss_pred             hcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhh--------------------hHHHHhHHHHHHhhhcCCc
Confidence            47778888888888888888888888777776666655544                    4899999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 029199           82 GNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYA  161 (197)
Q Consensus        82 ~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  161 (197)
                      .+-.+|+.+|.++.+ +++++.|+-.|++|++++|.|..+...+|.++.+.|+ .++|++.|++|+.++|.|+...+..|
T Consensus       487 rhYnAwYGlG~vy~K-qek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~-~d~AL~~~~~A~~ld~kn~l~~~~~~  564 (638)
T KOG1126|consen  487 RHYNAWYGLGTVYLK-QEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKR-KDKALQLYEKAIHLDPKNPLCKYHRA  564 (638)
T ss_pred             hhhHHHHhhhhheec-cchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhh-hhHHHHHHHHHHhcCCCCchhHHHHH
Confidence            999999999988887 9999999999999999999999999999999999996 89999999999999999999999999


Q ss_pred             HHHHHcCCccccccCCCcc
Q 029199          162 GFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       162 ~~~~~~g~~~ea~~~~~~~  180 (197)
                      .++..++++++|...++++
T Consensus       565 ~il~~~~~~~eal~~LEeL  583 (638)
T KOG1126|consen  565 SILFSLGRYVEALQELEEL  583 (638)
T ss_pred             HHHHhhcchHHHHHHHHHH
Confidence            9999999999998888886

>PRK12370 invasion protein regulator; Provisional

Probab=99.78  E-value=2.5e-18  Score=151.69  Aligned_cols=151  Identities=12%  Similarity=-0.013  Sum_probs=138.4

Q ss_pred             HHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 029199            8 EEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFL   87 (197)
Q Consensus         8 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~   87 (197)
                      ..++..+|+..+..+++.+|+++..+...|..+..                    .|++++|++.|+++++++|+++.+|
T Consensus       316 ~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~--------------------~g~~~~A~~~~~~Al~l~P~~~~a~  375 (553)
T PRK12370        316 KQNAMIKAKEHAIKATELDHNNPQALGLLGLINTI--------------------HSEYIVGSLLFKQANLLSPISADIK  375 (553)
T ss_pred             cchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH--------------------ccCHHHHHHHHHHHHHhCCCCHHHH
Confidence            45678999999999999999999999999988766                    4999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Q 029199           88 SNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHAS-PEDSHVHASYAGFLWE  166 (197)
Q Consensus        88 ~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~  166 (197)
                      +.+|.++.. .|++++|+..|+++++++|.++.+++.++.+++..|+ +++|+.++++++... |+++..+.++|.++..
T Consensus       376 ~~lg~~l~~-~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~-~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~  453 (553)
T PRK12370        376 YYYGWNLFM-AGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTG-IDDAIRLGDELRSQHLQDNPILLSMQVMFLSL  453 (553)
T ss_pred             HHHHHHHHH-CCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccC-HHHHHHHHHHHHHhccccCHHHHHHHHHHHHh
Confidence            999988877 9999999999999999999999887777777788785 899999999999885 8899999999999999


Q ss_pred             cCCccccccCCCcc
Q 029199          167 TEEDNDECDAPSEL  180 (197)
Q Consensus       167 ~g~~~ea~~~~~~~  180 (197)
                      +|++++|...++++
T Consensus       454 ~G~~~eA~~~~~~~  467 (553)
T PRK12370        454 KGKHELARKLTKEI  467 (553)
T ss_pred             CCCHHHHHHHHHHh
Confidence            99999999888875

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.76  E-value=8.5e-18  Score=137.58  Aligned_cols=152  Identities=9%  Similarity=0.005  Sum_probs=129.4

Q ss_pred             chhHHHHHHHHhhhcCcccccCCCC----hhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhC
Q 029199            5 ALSEEVKVMEALWNAGFEQERGTVG----QEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEEN   80 (197)
Q Consensus         5 ~~~~~~~~~~a~~~~~~~~~~~p~~----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~   80 (197)
                      .+...++.+.+|..++.++...|-+    +..|+.+|..+...                    |++++|+..|+++++++
T Consensus        35 ~~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~--------------------g~~~~A~~~~~~Al~l~   94 (296)
T PRK11189         35 PLQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSL--------------------GLRALARNDFSQALALR   94 (296)
T ss_pred             ccCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHC--------------------CCHHHHHHHHHHHHHcC
Confidence            3444578899999999999765533    56799999988774                    99999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 029199           81 PGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASY  160 (197)
Q Consensus        81 P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  160 (197)
                      |+++.+|+++|.++.. .|++++|+..|+++++++|+++.++.++|.+++..|+ +++|++.|+++++++|+++..... 
T Consensus        95 P~~~~a~~~lg~~~~~-~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~-~~eA~~~~~~al~~~P~~~~~~~~-  171 (296)
T PRK11189         95 PDMADAYNYLGIYLTQ-AGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGR-YELAQDDLLAFYQDDPNDPYRALW-  171 (296)
T ss_pred             CCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCHHHHHH-
Confidence            9999999999977776 9999999999999999999999999999999999885 999999999999999999843222 


Q ss_pred             HHHHHHcCCccccccCCCc
Q 029199          161 AGFLWETEEDNDECDAPSE  179 (197)
Q Consensus       161 a~~~~~~g~~~ea~~~~~~  179 (197)
                      ..+....++.++|...+++
T Consensus       172 ~~l~~~~~~~~~A~~~l~~  190 (296)
T PRK11189        172 LYLAESKLDPKQAKENLKQ  190 (296)
T ss_pred             HHHHHccCCHHHHHHHHHH
Confidence            2234556788898877754

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.76  E-value=3.1e-18  Score=158.34  Aligned_cols=172  Identities=13%  Similarity=0.089  Sum_probs=135.3

Q ss_pred             chhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCC--------CCCCCCCCCc------ccCCCCCHHHHH
Q 029199            5 ALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGG--------GTGGGGSGFY------PAGSGGDSQGVE   70 (197)
Q Consensus         5 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~--------~~~~~~~~~~------~~~~~g~~~~A~   70 (197)
                      ++-+.|++.+|+..|.......|.+ ..++..|..+...|....        ....|.....      .....|++++|+
T Consensus       518 al~~~Gr~eeAi~~~rka~~~~p~~-~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl  596 (987)
T PRK09782        518 QAYQVEDYATALAAWQKISLHDMSN-EDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELAL  596 (987)
T ss_pred             HHHHCCCHHHHHHHHHHHhccCCCc-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHH
Confidence            3456677777777776655544443 334555554444443221        1112322211      111239999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 029199           71 EYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHAS  150 (197)
Q Consensus        71 ~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~  150 (197)
                      ..|+++++++|+ +.++.++|.++.. .|++++|+.+|+++++++|+++.++.++|.++...|+ +++|+++|+++++++
T Consensus       597 ~~~~~AL~l~P~-~~a~~~LA~~l~~-lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~-~eeAi~~l~~AL~l~  673 (987)
T PRK09782        597 NDLTRSLNIAPS-ANAYVARATIYRQ-RHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGD-IAQSREMLERAHKGL  673 (987)
T ss_pred             HHHHHHHHhCCC-HHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhC
Confidence            999999999996 9999999988777 9999999999999999999999999999999999885 999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          151 PEDSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       151 p~~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      |+++.+++++|.++..+|++++|+..+++.
T Consensus       674 P~~~~a~~nLA~al~~lGd~~eA~~~l~~A  703 (987)
T PRK09782        674 PDDPALIRQLAYVNQRLDDMAATQHYARLV  703 (987)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            999999999999999999999999888885

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.75  E-value=5.6e-18  Score=138.65  Aligned_cols=155  Identities=12%  Similarity=-0.001  Sum_probs=129.3

Q ss_pred             CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCC
Q 029199            3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPG   82 (197)
Q Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~   82 (197)
                      |+++...|+..+|+..|..+++.+|+++..|+..|..+...                    |++++|+..|+++++++|+
T Consensus        71 g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~--------------------g~~~~A~~~~~~Al~l~P~  130 (296)
T PRK11189         71 GVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQA--------------------GNFDAAYEAFDSVLELDPT  130 (296)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC--------------------CCHHHHHHHHHHHHHhCCC
Confidence            77888899999999999999999999999999999988774                    9999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------------
Q 029199           83 NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHA-------------  149 (197)
Q Consensus        83 ~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~-------------  149 (197)
                      +..+|.++|.+++. .|++++|++.|+++++++|+++.....+. +... .+++++|++.|++++..             
T Consensus       131 ~~~a~~~lg~~l~~-~g~~~eA~~~~~~al~~~P~~~~~~~~~~-l~~~-~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~  207 (296)
T PRK11189        131 YNYAYLNRGIALYY-GGRYELAQDDLLAFYQDDPNDPYRALWLY-LAES-KLDPKQAKENLKQRYEKLDKEQWGWNIVEF  207 (296)
T ss_pred             CHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHH-HHHc-cCCHHHHHHHHHHHHhhCCccccHHHHHHH
Confidence            99999999988887 99999999999999999999984322221 1222 33467777777554432             


Q ss_pred             ------------------------CCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          150 ------------------------SPEDSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       150 ------------------------~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                                              .|..+++|+++|.++.++|++++|+..|++.
T Consensus       208 ~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~A  262 (296)
T PRK11189        208 YLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLA  262 (296)
T ss_pred             HccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence                                    3334567899999999999999999999885

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.75  E-value=2.8e-17  Score=127.12  Aligned_cols=117  Identities=9%  Similarity=0.135  Sum_probs=108.6

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHHcCC-HHHHH
Q 029199           63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLV-WELHND-QDRAA  140 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l-~~~~~~-~~~A~  140 (197)
                      .++.++++..++++++.+|+++..|..+|.++.. .|++++|+.+|+++++++|+++.++.++|.++ ...|+. +++|.
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~-~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~  130 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLW-RNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTR  130 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence            5788999999999999999999999999977777 99999999999999999999999999999986 454531 48999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          141 TYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       141 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      +.++++++++|+++.+++++|.++.++|++++|+..++++
T Consensus       131 ~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a  170 (198)
T PRK10370        131 EMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV  170 (198)
T ss_pred             HHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998885

>PRK12370 invasion protein regulator; Provisional

Probab=99.75  E-value=1e-17  Score=147.85  Aligned_cols=158  Identities=13%  Similarity=-0.007  Sum_probs=135.5

Q ss_pred             HHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 029199           10 VKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSN   89 (197)
Q Consensus        10 ~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~   89 (197)
                      ....+|+..|..+++.+|+++..|...|......+..           ......+++++|+..++++++++|+++.+|..
T Consensus       275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~-----------g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~  343 (553)
T PRK12370        275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQM-----------GIFDKQNAMIKAKEHAIKATELDHNNPQALGL  343 (553)
T ss_pred             HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHc-----------CCcccchHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            3467999999999999999999887777543211100           00112478999999999999999999999999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 029199           90 YAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEE  169 (197)
Q Consensus        90 la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  169 (197)
                      +|.++.. .|++++|+.+|+++++++|+++.+++++|.++...|+ +++|+.+++++++++|.++..++.++.++...|+
T Consensus       344 lg~~~~~-~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~-~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~  421 (553)
T PRK12370        344 LGLINTI-HSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQ-LEEALQTINECLKLDPTRAAAGITKLWITYYHTG  421 (553)
T ss_pred             HHHHHHH-ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccC
Confidence            9977776 9999999999999999999999999999999999885 9999999999999999999888888888888999


Q ss_pred             ccccccCCCcc
Q 029199          170 DNDECDAPSEL  180 (197)
Q Consensus       170 ~~ea~~~~~~~  180 (197)
                      +++|+..++++
T Consensus       422 ~eeA~~~~~~~  432 (553)
T PRK12370        422 IDDAIRLGDEL  432 (553)
T ss_pred             HHHHHHHHHHH
Confidence            99998888764

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.74  E-value=1.7e-17  Score=148.04  Aligned_cols=149  Identities=15%  Similarity=0.073  Sum_probs=136.7

Q ss_pred             HHHHHHhhhcCccccc---CCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHH
Q 029199           10 VKVMEALWNAGFEQER---GTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLF   86 (197)
Q Consensus        10 ~~~~~a~~~~~~~~~~---~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~   86 (197)
                      +++.+|+..|..+++.   .|..+..+...|.....                    .|++++|+..|+++++++|++...
T Consensus       308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~--------------------~g~~~eA~~~~~kal~l~P~~~~~  367 (615)
T TIGR00990       308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCL--------------------KGKHLEALADLSKSIELDPRVTQS  367 (615)
T ss_pred             hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHHcCCCcHHH
Confidence            4688899998888765   46777788888887665                    499999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 029199           87 LSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWE  166 (197)
Q Consensus        87 ~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  166 (197)
                      |.++|.++.. .|++++|+.+|+++++++|+++.+++++|.+++..|+ +++|+.+|+++++++|++..++.++|.++.+
T Consensus       368 ~~~la~~~~~-~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~kal~l~P~~~~~~~~la~~~~~  445 (615)
T TIGR00990       368 YIKRASMNLE-LGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGE-FAQAGKDYQKSIDLDPDFIFSHIQLGVTQYK  445 (615)
T ss_pred             HHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCccCHHHHHHHHHHHHH
Confidence            9999988887 9999999999999999999999999999999999884 9999999999999999999999999999999


Q ss_pred             cCCccccccCCCcc
Q 029199          167 TEEDNDECDAPSEL  180 (197)
Q Consensus       167 ~g~~~ea~~~~~~~  180 (197)
                      +|++++|...+++.
T Consensus       446 ~g~~~eA~~~~~~a  459 (615)
T TIGR00990       446 EGSIASSMATFRRC  459 (615)
T ss_pred             CCCHHHHHHHHHHH
Confidence            99999999888874

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.74  E-value=1.6e-17  Score=149.08  Aligned_cols=155  Identities=17%  Similarity=0.162  Sum_probs=120.2

Q ss_pred             cchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHH----HHHHHHHHHHh
Q 029199            4 TALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQG----VEEYYKKMVEE   79 (197)
Q Consensus         4 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~----A~~~~~~al~~   79 (197)
                      .+|.+.+++.+|+..|..+++.+|+++..+...|..+...                    |++++    |+..|++++++
T Consensus       220 ~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~--------------------G~~~eA~~~A~~~~~~Al~l  279 (656)
T PRK15174        220 DTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQS--------------------GRSREAKLQAAEHWRHALQF  279 (656)
T ss_pred             HHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc--------------------CCchhhHHHHHHHHHHHHhh
Confidence            3455667777777777777777777777777777666553                    66654    78888888888


Q ss_pred             CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 029199           80 NPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHAS  159 (197)
Q Consensus        80 ~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  159 (197)
                      +|+++.++.++|.++.. .|++++|+..++++++++|+++.++.++|.++...|+ +++|+..|+++++.+|+++..+..
T Consensus       280 ~P~~~~a~~~lg~~l~~-~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~-~~eA~~~l~~al~~~P~~~~~~~~  357 (656)
T PRK15174        280 NSDNVRIVTLYADALIR-TGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQ-YTAASDEFVQLAREKGVTSKWNRY  357 (656)
T ss_pred             CCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCccchHHHHH
Confidence            88888888888877776 8888888888888888888888888888888888774 888888888888888887777777


Q ss_pred             HHHHHHHcCCccccccCCCcc
Q 029199          160 YAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       160 la~~~~~~g~~~ea~~~~~~~  180 (197)
                      +|.++..+|++++|...|+++
T Consensus       358 ~a~al~~~G~~deA~~~l~~a  378 (656)
T PRK15174        358 AAAALLQAGKTSEAESVFEHY  378 (656)
T ss_pred             HHHHHHHCCCHHHHHHHHHHH
Confidence            788888888888887777764

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.73  E-value=1.5e-17  Score=128.03  Aligned_cols=120  Identities=19%  Similarity=0.225  Sum_probs=109.4

Q ss_pred             ccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 029199           59 PAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDR  138 (197)
Q Consensus        59 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~  138 (197)
                      .+...|++..|.+.++++|+.||++..+|..++ .+|...|+.+.|.+.|++|++++|++.++++|+|.+|+..|+ +++
T Consensus        44 ~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A-~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~-~~e  121 (250)
T COG3063          44 GYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRA-HYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGR-PEE  121 (250)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHH-HHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCC-hHH
Confidence            345569999999999999999999999999999 555559999999999999999999999999999999999885 999


Q ss_pred             HHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          139 AATYYERAVHA--SPEDSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       139 A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      |..+|++|+..  .|..+..+-|+|.|..+.|+.+.|...|++.
T Consensus       122 A~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~ra  165 (250)
T COG3063         122 AMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRA  165 (250)
T ss_pred             HHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHH
Confidence            99999999975  3667789999999999999999999888883

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.73  E-value=3e-17  Score=126.78  Aligned_cols=156  Identities=21%  Similarity=0.224  Sum_probs=141.1

Q ss_pred             CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCC
Q 029199            3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPG   82 (197)
Q Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~   82 (197)
                      |.++...+++.+|+..|..+++.+|+++..+...|.....                    .|++++|++.|+++++.+|+
T Consensus        38 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~--------------------~~~~~~A~~~~~~al~~~~~   97 (234)
T TIGR02521        38 ALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQ--------------------LGELEKAEDSFRRALTLNPN   97 (234)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHhhCCC
Confidence            4567778899999999999999999999999888877666                    49999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 029199           83 NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILAD--PGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASY  160 (197)
Q Consensus        83 ~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~--P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  160 (197)
                      +..++.++|.++.. .|++++|+..|+++++..  |..+..+.++|.++...|+ +++|..+|+++++.+|+++.++..+
T Consensus        98 ~~~~~~~~~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~l  175 (234)
T TIGR02521        98 NGDVLNNYGTFLCQ-QGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGD-FDKAEKYLTRALQIDPQRPESLLEL  175 (234)
T ss_pred             CHHHHHHHHHHHHH-cccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCcCChHHHHHH
Confidence            99999999988877 999999999999999853  5677899999999999885 9999999999999999999999999


Q ss_pred             HHHHHHcCCccccccCCCcc
Q 029199          161 AGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       161 a~~~~~~g~~~ea~~~~~~~  180 (197)
                      +.++...|++++|...+++.
T Consensus       176 a~~~~~~~~~~~A~~~~~~~  195 (234)
T TIGR02521       176 AELYYLRGQYKDARAYLERY  195 (234)
T ss_pred             HHHHHHcCCHHHHHHHHHHH
Confidence            99999999999998877775

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.73  E-value=2.1e-18  Score=148.73  Aligned_cols=116  Identities=11%  Similarity=0.156  Sum_probs=111.3

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 029199           63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATY  142 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~  142 (197)
                      .++++.|+++|++|+++||+++-+|..+|.-+.. ..++++|..+|++||..+|++..+|+.+|.+|.++++ ++.|+-+
T Consensus       434 Qkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~-~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek-~e~Ae~~  511 (638)
T KOG1126|consen  434 QKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIA-TEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEK-LEFAEFH  511 (638)
T ss_pred             hhHHHHHHHHHHHhhccCCccchhhhhcCChhhh-hHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccch-hhHHHHH
Confidence            6999999999999999999999999999977776 8999999999999999999999999999999999886 9999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          143 YERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       143 ~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      |++|+.++|.|..+.-.+|.++.++|+.|+|.+.+.+.
T Consensus       512 fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A  549 (638)
T KOG1126|consen  512 FQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKA  549 (638)
T ss_pred             HHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHH
Confidence            99999999999999999999999999999999888884

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.73  E-value=1.6e-17  Score=127.86  Aligned_cols=152  Identities=17%  Similarity=0.148  Sum_probs=137.2

Q ss_pred             hhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHH
Q 029199            6 LSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPL   85 (197)
Q Consensus         6 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~   85 (197)
                      |=+.|....|..++.++++.+|++.-.|..+...+-..                    |+.+.|.+.|++|++++|++.+
T Consensus        45 YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~--------------------Ge~~~A~e~YrkAlsl~p~~Gd  104 (250)
T COG3063          45 YLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKL--------------------GENDLADESYRKALSLAPNNGD  104 (250)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc--------------------CChhhHHHHHHHHHhcCCCccc
Confidence            44556777888999999999999999999999888774                    9999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 029199           86 FLSNYAQFLYQSKQDLPKAEEYYSRAILA--DPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGF  163 (197)
Q Consensus        86 ~~~~la~~l~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  163 (197)
                      +++|+|.+++. +|++++|...|++|+..  .|.-+..+.|+|.|-.+.|+ ++.|.++|+++|+++|+++.....++..
T Consensus       105 VLNNYG~FLC~-qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq-~~~A~~~l~raL~~dp~~~~~~l~~a~~  182 (250)
T COG3063         105 VLNNYGAFLCA-QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQ-FDQAEEYLKRALELDPQFPPALLELARL  182 (250)
T ss_pred             hhhhhhHHHHh-CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCC-chhHHHHHHHHHHhCcCCChHHHHHHHH
Confidence            99999999998 99999999999999973  34566899999999999885 8999999999999999999999999999


Q ss_pred             HHHcCCccccccCCCc
Q 029199          164 LWETEEDNDECDAPSE  179 (197)
Q Consensus       164 ~~~~g~~~ea~~~~~~  179 (197)
                      .++.|++-+|.-.+.+
T Consensus       183 ~~~~~~y~~Ar~~~~~  198 (250)
T COG3063         183 HYKAGDYAPARLYLER  198 (250)
T ss_pred             HHhcccchHHHHHHHH
Confidence            9999999999655554

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.72  E-value=2.8e-17  Score=120.96  Aligned_cols=107  Identities=16%  Similarity=0.102  Sum_probs=100.2

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 029199           69 VEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVH  148 (197)
Q Consensus        69 A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~  148 (197)
                      -...|+++++++|++   +.++|..+.. .|++++|+.+|++++.++|.++.++.++|.++...|+ +++|+.+|+++++
T Consensus        12 ~~~~~~~al~~~p~~---~~~~g~~~~~-~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~-~~~A~~~y~~Al~   86 (144)
T PRK15359         12 PEDILKQLLSVDPET---VYASGYASWQ-EGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKE-YTTAINFYGHALM   86 (144)
T ss_pred             HHHHHHHHHHcCHHH---HHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh-HHHHHHHHHHHHh
Confidence            457899999999986   5678978777 9999999999999999999999999999999999895 9999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          149 ASPEDSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       149 ~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      ++|+++.+++++|.++..+|++++|+..|++.
T Consensus        87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~A  118 (144)
T PRK15359         87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTA  118 (144)
T ss_pred             cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            99999999999999999999999999999884

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.72  E-value=6.4e-17  Score=125.10  Aligned_cols=129  Identities=13%  Similarity=0.114  Sum_probs=116.6

Q ss_pred             hhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHH
Q 029199            6 LSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPL   85 (197)
Q Consensus         6 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~   85 (197)
                      ++...++.+++..+...++.+|++++.|+..|..+..                    .|++++|+.+|+++++++|+++.
T Consensus        49 ~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~--------------------~g~~~~A~~a~~~Al~l~P~~~~  108 (198)
T PRK10370         49 FASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLW--------------------RNDYDNALLAYRQALQLRGENAE  108 (198)
T ss_pred             ccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH--------------------CCCHHHHHHHHHHHHHhCCCCHH
Confidence            3456778999999999999999999999999988766                    49999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 029199           86 FLSNYAQFLYQSKQD--LPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSH  155 (197)
Q Consensus        86 ~~~~la~~l~~~~g~--~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~  155 (197)
                      ++.++|.+++...|+  +++|++.++++++++|+++.+++++|..++..| ++++|+.+++++++++|.+..
T Consensus       109 ~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g-~~~~Ai~~~~~aL~l~~~~~~  179 (198)
T PRK10370        109 LYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQA-DYAQAIELWQKVLDLNSPRVN  179 (198)
T ss_pred             HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCcc
Confidence            999999876543777  599999999999999999999999999999988 599999999999999987553

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.69  E-value=5.5e-17  Score=153.70  Aligned_cols=176  Identities=16%  Similarity=0.136  Sum_probs=149.8

Q ss_pred             CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCC--------CCCCCCCCC-----------------
Q 029199            3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGG--------GTGGGGSGF-----------------   57 (197)
Q Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~--------~~~~~~~~~-----------------   57 (197)
                      |.++-+.+++.+|+..|..+++.+|+++.++...|..+...|.+.+        ....|....                 
T Consensus       276 G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~  355 (1157)
T PRK11447        276 GLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI  355 (1157)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence            5566778999999999999999999999999999999887776433        123444321                 


Q ss_pred             ---cccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-----
Q 029199           58 ---YPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLV-----  129 (197)
Q Consensus        58 ---~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l-----  129 (197)
                         ..+...|++++|++.|+++++++|+++.++..+|.++.. .|++++|+++|+++++++|+++.++..++.++     
T Consensus       356 ~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~-~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~  434 (1157)
T PRK11447        356 QQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMA-RKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSP  434 (1157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCH
Confidence               123457999999999999999999999999999988887 99999999999999999999998887776553     


Q ss_pred             -------------------------------------HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccc
Q 029199          130 -------------------------------------WELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDND  172 (197)
Q Consensus       130 -------------------------------------~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~e  172 (197)
                                                           ...| ++++|+++|+++++++|+++.+++.+|.++.++|++++
T Consensus       435 ~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g-~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~  513 (1157)
T PRK11447        435 EKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQG-KWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQ  513 (1157)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence                                                 2335 58999999999999999999999999999999999999


Q ss_pred             cccCCCcc
Q 029199          173 ECDAPSEL  180 (197)
Q Consensus       173 a~~~~~~~  180 (197)
                      |...++++
T Consensus       514 A~~~l~~a  521 (1157)
T PRK11447        514 ADALMRRL  521 (1157)
T ss_pred             HHHHHHHH
Confidence            98888875

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.69  E-value=8.8e-17  Score=148.83  Aligned_cols=148  Identities=12%  Similarity=0.075  Sum_probs=131.4

Q ss_pred             HHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 029199           10 VKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSN   89 (197)
Q Consensus        10 ~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~   89 (197)
                      |++.+|+..|..+++.+|+ +..++..|..+..                    .|++++|+..|++++.++|+++.++.+
T Consensus       590 Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~--------------------lG~~deA~~~l~~AL~l~Pd~~~a~~n  648 (987)
T PRK09782        590 GQPELALNDLTRSLNIAPS-ANAYVARATIYRQ--------------------RHNVPAAVSDLRAALELEPNNSNYQAA  648 (987)
T ss_pred             CCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHH--------------------CCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            6666666666666666664 6666666665555                    599999999999999999999999999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 029199           90 YAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEE  169 (197)
Q Consensus        90 la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  169 (197)
                      +|.++.. .|++++|+..|+++++++|+++.+++++|.++..+|+ +++|+.+|+++++++|++..+....|.+.....+
T Consensus       649 LG~aL~~-~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd-~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~  726 (987)
T PRK09782        649 LGYALWD-SGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDD-MAATQHYARLVIDDIDNQALITPLTPEQNQQRFN  726 (987)
T ss_pred             HHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHH
Confidence            9988887 9999999999999999999999999999999999885 9999999999999999999999999999999999


Q ss_pred             ccccccCCCcc
Q 029199          170 DNDECDAPSEL  180 (197)
Q Consensus       170 ~~ea~~~~~~~  180 (197)
                      ++.+.+.+++.
T Consensus       727 ~~~a~~~~~r~  737 (987)
T PRK09782        727 FRRLHEEVGRR  737 (987)
T ss_pred             HHHHHHHHHHH
Confidence            99998877774

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.69  E-value=1.3e-16  Score=144.95  Aligned_cols=114  Identities=25%  Similarity=0.339  Sum_probs=89.1

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 029199           63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATY  142 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~  142 (197)
                      .|++++|++.|+++++.+|+++.++.+++.++.. .|+ .+|+..+++++.+.|+++.++.++|.++...|+ +++|+.+
T Consensus       783 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~-~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~A~~~  859 (899)
T TIGR02917       783 QKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLE-LKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGE-ADRALPL  859 (899)
T ss_pred             CcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-cCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC-HHHHHHH
Confidence            4778888888888888888888888888766665 777 778888888888888888888888888777664 7888888


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCc
Q 029199          143 YERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSE  179 (197)
Q Consensus       143 ~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~  179 (197)
                      |+++++++|.++.++.+++.++...|++++|.+.+++
T Consensus       860 ~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  896 (899)
T TIGR02917       860 LRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDK  896 (899)
T ss_pred             HHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            8888888888888888888888888888887766654

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.69  E-value=7e-17  Score=130.88  Aligned_cols=132  Identities=22%  Similarity=0.274  Sum_probs=102.2

Q ss_pred             CCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q 029199           27 TVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEE  106 (197)
Q Consensus        27 p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~  106 (197)
                      +.++..++..|.....                    .|+.++|+++|+++++++|+++.++..++.++.. .|+.+++..
T Consensus       143 ~~~~~~~~~~a~~~~~--------------------~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~-~~~~~~~~~  201 (280)
T PF13429_consen  143 PDSARFWLALAEIYEQ--------------------LGDPDKALRDYRKALELDPDDPDARNALAWLLID-MGDYDEARE  201 (280)
T ss_dssp             -T-HHHHHHHHHHHHH--------------------CCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCT-TCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-CCChHHHHH
Confidence            5677778777777665                    4999999999999999999999999999977766 999999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          107 YYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       107 ~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      .++...+..|+++.++..+|.++..+|+ +++|+.+|+++++.+|+|+.++.++|.++...|+.++|...++++
T Consensus       202 ~l~~~~~~~~~~~~~~~~la~~~~~lg~-~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~  274 (280)
T PF13429_consen  202 ALKRLLKAAPDDPDLWDALAAAYLQLGR-YEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQA  274 (280)
T ss_dssp             HHHHHHHH-HTSCCHCHHHHHHHHHHT--HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT---------------
T ss_pred             HHHHHHHHCcCHHHHHHHHHHHhccccc-ccccccccccccccccccccccccccccccccccccccccccccc
Confidence            9999999999999999999999999996 999999999999999999999999999999999999998887764

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.68  E-value=2.6e-16  Score=125.39  Aligned_cols=113  Identities=16%  Similarity=0.169  Sum_probs=106.4

Q ss_pred             CcccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 029199           57 FYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQ  136 (197)
Q Consensus        57 ~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~  136 (197)
                      |..++..++|.+|+..|.+||+++|+++..|.|++.+|.+ +|+++.|++.++.+|.+||....+|..+|.+|+.+|+ +
T Consensus        88 GN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~-Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk-~  165 (304)
T KOG0553|consen   88 GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSK-LGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGK-Y  165 (304)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHH-hcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCc-H
Confidence            3456677999999999999999999999999999988887 9999999999999999999999999999999999886 9


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcc
Q 029199          137 DRAATYYERAVHASPEDSHVHASYAGFLWETEEDN  171 (197)
Q Consensus       137 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~  171 (197)
                      ++|++.|+++|+++|+|...+.+|.+.-.++++..
T Consensus       166 ~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  166 EEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             HHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence            99999999999999999999999999999888777

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.66  E-value=6.2e-16  Score=138.64  Aligned_cols=144  Identities=12%  Similarity=-0.026  Sum_probs=129.6

Q ss_pred             HhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 029199           15 ALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFL   94 (197)
Q Consensus        15 a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l   94 (197)
                      ++.++.-.-...|.+++.++..|-....+                    |.+++|+..++.+++++|++..++.+++.++
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~La~i~~~~--------------------g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L  130 (694)
T PRK15179         71 ALPELLDYVRRYPHTELFQVLVARALEAA--------------------HRSDEGLAVWRGIHQRFPDSSEAFILMLRGV  130 (694)
T ss_pred             hHHHHHHHHHhccccHHHHHHHHHHHHHc--------------------CCcHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Confidence            34444444456777888877777665553                    9999999999999999999999999999999


Q ss_pred             HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccc
Q 029199           95 YQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDEC  174 (197)
Q Consensus        95 ~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~  174 (197)
                      .+ .+++++|+..++++++.+|+++.+++.+|.++.++|+ +++|+.+|++++..+|+++.++.++|.++...|+.++|.
T Consensus       131 ~~-~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~-~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~  208 (694)
T PRK15179        131 KR-QQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQ-SEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRAR  208 (694)
T ss_pred             HH-hccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcc-hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence            88 9999999999999999999999999999999999996 999999999999999999999999999999999999999


Q ss_pred             cCCCcc
Q 029199          175 DAPSEL  180 (197)
Q Consensus       175 ~~~~~~  180 (197)
                      ..|++.
T Consensus       209 ~~~~~a  214 (694)
T PRK15179        209 DVLQAG  214 (694)
T ss_pred             HHHHHH
Confidence            988874

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.66  E-value=6.5e-16  Score=138.77  Aligned_cols=175  Identities=14%  Similarity=0.046  Sum_probs=146.1

Q ss_pred             CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCC--------CCCCCCC-C------CcccCCCCCHH
Q 029199            3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGG--------GTGGGGS-G------FYPAGSGGDSQ   67 (197)
Q Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~--------~~~~~~~-~------~~~~~~~g~~~   67 (197)
                      |.++...|++.+|+..+.......|+++..+...+. +...|...+        ....|.. .      ...+...|+++
T Consensus       151 a~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~-l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~  229 (656)
T PRK15174        151 LRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLS-FLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQ  229 (656)
T ss_pred             HHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHH
Confidence            567888899999999998888889999888765433 333333211        0111111 1      12344579999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 029199           68 GVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPK----AEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYY  143 (197)
Q Consensus        68 ~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~----A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~  143 (197)
                      +|+..|+++++++|+++.+++++|.++.. .|++++    |+..|+++++++|+++.++.++|.++...|+ +++|+.++
T Consensus       230 eA~~~~~~al~~~p~~~~~~~~Lg~~l~~-~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~-~~eA~~~l  307 (656)
T PRK15174        230 EAIQTGESALARGLDGAALRRSLGLAYYQ-SGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQ-NEKAIPLL  307 (656)
T ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHH-cCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCC-HHHHHHHH
Confidence            99999999999999999999999988887 999985    8999999999999999999999999999885 99999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          144 ERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       144 ~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      +++++++|+++.++.++|.++..+|++++|...++++
T Consensus       308 ~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~a  344 (656)
T PRK15174        308 QQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQL  344 (656)
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            9999999999999999999999999999999988886

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.66  E-value=8.1e-16  Score=145.80  Aligned_cols=160  Identities=17%  Similarity=0.205  Sum_probs=143.1

Q ss_pred             CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCC
Q 029199            3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPG   82 (197)
Q Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~   82 (197)
                      |.++...+++.+|+..|..+++.+|+++..++..|..+..                    .|++++|+++|+++++++|+
T Consensus       358 g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~--------------------~g~~~eA~~~y~~aL~~~p~  417 (1157)
T PRK11447        358 GDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMA--------------------RKDYAAAERYYQQALRMDPG  417 (1157)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--------------------CCCHHHHHHHHHHHHHhCCC
Confidence            4456677899999999999999999999999988887766                    49999999999999999999


Q ss_pred             CHHHHHHHHHHHH-----------------------------------------HhcCCHHHHHHHHHHHHHhCCCCHHH
Q 029199           83 NPLFLSNYAQFLY-----------------------------------------QSKQDLPKAEEYYSRAILADPGDGEI  121 (197)
Q Consensus        83 ~~~~~~~la~~l~-----------------------------------------~~~g~~~~A~~~~~~al~l~P~~~~~  121 (197)
                      +..++..++.++.                                         ...|++++|+..|+++++++|+++.+
T Consensus       418 ~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~  497 (1157)
T PRK11447        418 NTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWL  497 (1157)
T ss_pred             CHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence            9988877764431                                         12689999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCccccc
Q 029199          122 LSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSELDSN  183 (197)
Q Consensus       122 ~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~~~~  183 (197)
                      ++.+|.++...|+ +++|+..|+++++.+|+++..++.++.++...|+.++|...+++++..
T Consensus       498 ~~~LA~~~~~~G~-~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~  558 (1157)
T PRK11447        498 TYRLAQDLRQAGQ-RSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRA  558 (1157)
T ss_pred             HHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCch
Confidence            9999999999885 999999999999999999999999999999999999999988887643

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.65  E-value=8.9e-16  Score=128.24  Aligned_cols=156  Identities=14%  Similarity=0.086  Sum_probs=142.2

Q ss_pred             CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCC
Q 029199            3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPG   82 (197)
Q Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~   82 (197)
                      ||-||=-...+.|+.-|..++..+|....+|--.|.-+-.                    +++...|+.+|++|++++|.
T Consensus       337 aNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvE--------------------mKNt~AAi~sYRrAvdi~p~  396 (559)
T KOG1155|consen  337 ANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVE--------------------MKNTHAAIESYRRAVDINPR  396 (559)
T ss_pred             hhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHH--------------------hcccHHHHHHHHHHHhcCch
Confidence            6667778889999999999999999999888888887655                    48899999999999999999


Q ss_pred             CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 029199           83 NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAG  162 (197)
Q Consensus        83 ~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  162 (197)
                      |-.+|+.||..+-. ++.+.-|+-+|++|+++-|+|+-+|..+|.+|.++++ .++|++||.+++.....+..++..+|.
T Consensus       397 DyRAWYGLGQaYei-m~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~-~~eAiKCykrai~~~dte~~~l~~Lak  474 (559)
T KOG1155|consen  397 DYRAWYGLGQAYEI-MKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNR-LEEAIKCYKRAILLGDTEGSALVRLAK  474 (559)
T ss_pred             hHHHHhhhhHHHHH-hcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhcc-HHHHHHHHHHHHhccccchHHHHHHHH
Confidence            99999999988776 9999999999999999999999999999999999997 899999999999999889999999999


Q ss_pred             HHHHcCCccccccCCCcc
Q 029199          163 FLWETEEDNDECDAPSEL  180 (197)
Q Consensus       163 ~~~~~g~~~ea~~~~~~~  180 (197)
                      ++.++++..+|...|...
T Consensus       475 Lye~l~d~~eAa~~yek~  492 (559)
T KOG1155|consen  475 LYEELKDLNEAAQYYEKY  492 (559)
T ss_pred             HHHHHHhHHHHHHHHHHH
Confidence            999999999997766654

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.65  E-value=3.8e-15  Score=107.61  Aligned_cols=114  Identities=15%  Similarity=0.106  Sum_probs=72.3

Q ss_pred             cccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC
Q 029199           21 FEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQD  100 (197)
Q Consensus        21 ~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~  100 (197)
                      .+++.+|++....+..|..+..                    .|++++|+..|++++..+|+++.+|.++|.+++. .|+
T Consensus         8 ~~l~~~p~~~~~~~~~a~~~~~--------------------~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~-~~~   66 (135)
T TIGR02552         8 DLLGLDSEQLEQIYALAYNLYQ--------------------QGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQM-LKE   66 (135)
T ss_pred             HHHcCChhhHHHHHHHHHHHHH--------------------cccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-HHH
Confidence            3445566666666665655544                    2666666666666666666666666666655555 666


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 029199          101 LPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHV  156 (197)
Q Consensus       101 ~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~  156 (197)
                      +++|+.+|+++++.+|+++..++++|.++...|+ +++|+..|+++++++|++...
T Consensus        67 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~  121 (135)
T TIGR02552        67 YEEAIDAYALAAALDPDDPRPYFHAAECLLALGE-PESALKALDLAIEICGENPEY  121 (135)
T ss_pred             HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhccccchH
Confidence            6666666666666666666666666666666553 666666666666666666553

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.64  E-value=9.4e-16  Score=120.97  Aligned_cols=156  Identities=14%  Similarity=0.051  Sum_probs=128.7

Q ss_pred             CcchhHHHHHHHHhhhcCcccccCCCCh---hhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHh
Q 029199            3 GTALSEEVKVMEALWNAGFEQERGTVGQ---EMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEE   79 (197)
Q Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~   79 (197)
                      |..+-..+++.+|+..|...+...|+++   ..++..|..+..                    .|++++|+..|+++++.
T Consensus        40 g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~--------------------~~~~~~A~~~~~~~l~~   99 (235)
T TIGR03302        40 AKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYK--------------------SGDYAEAIAAADRFIRL   99 (235)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHh--------------------cCCHHHHHHHHHHHHHH
Confidence            4556677888999999998888888876   466777777766                    48999999999999999


Q ss_pred             CCCCHH---HHHHHHHHHHHhc--------CCHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHH
Q 029199           80 NPGNPL---FLSNYAQFLYQSK--------QDLPKAEEYYSRAILADPGDGEIL-----------------SQYAKLVWE  131 (197)
Q Consensus        80 ~P~~~~---~~~~la~~l~~~~--------g~~~~A~~~~~~al~l~P~~~~~~-----------------~~lg~~l~~  131 (197)
                      +|+++.   +++.+|.+++. .        |++++|++.|++++..+|+++.++                 ..+|.+++.
T Consensus       100 ~p~~~~~~~a~~~~g~~~~~-~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~  178 (235)
T TIGR03302       100 HPNHPDADYAYYLRGLSNYN-QIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLK  178 (235)
T ss_pred             CcCCCchHHHHHHHHHHHHH-hcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            998876   68888877775 4        788999999999999999987553                 356777888


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          132 LHNDQDRAATYYERAVHASPED---SHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       132 ~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      .|+ +++|+..|+++++..|++   +.+++.+|.++..+|++++|...++.+
T Consensus       179 ~g~-~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l  229 (235)
T TIGR03302       179 RGA-YVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVL  229 (235)
T ss_pred             cCC-hHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            774 899999999999997654   578999999999999999998776654

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PLN02789 farnesyltranstransferase

Probab=99.64  E-value=1.9e-15  Score=124.69  Aligned_cols=142  Identities=10%  Similarity=0.040  Sum_probs=128.4

Q ss_pred             hhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHH
Q 029199            6 LSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPL   85 (197)
Q Consensus         6 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~   85 (197)
                      +...++..+|+..++.+++.+|.+..+|..+|..+..++                   .++++++..++++++.+|++..
T Consensus        47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~-------------------~~l~eeL~~~~~~i~~npknyq  107 (320)
T PLN02789         47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALD-------------------ADLEEELDFAEDVAEDNPKNYQ  107 (320)
T ss_pred             HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcc-------------------hhHHHHHHHHHHHHHHCCcchH
Confidence            334457789999999999999999999999999988751                   3689999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 029199           86 FLSNYAQFLYQSKQDL--PKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGF  163 (197)
Q Consensus        86 ~~~~la~~l~~~~g~~--~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  163 (197)
                      +|++++.++.. .++.  ++++.+++++++++|+|..+|..+++++..+++ +++|+++++++|+.+|.|..+|++++.+
T Consensus       108 aW~~R~~~l~~-l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~-~~eeL~~~~~~I~~d~~N~sAW~~R~~v  185 (320)
T PLN02789        108 IWHHRRWLAEK-LGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGG-WEDELEYCHQLLEEDVRNNSAWNQRYFV  185 (320)
T ss_pred             HhHHHHHHHHH-cCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHCCCchhHHHHHHHH
Confidence            99999977665 7764  788999999999999999999999999999985 9999999999999999999999999999


Q ss_pred             HHHcC
Q 029199          164 LWETE  168 (197)
Q Consensus       164 ~~~~g  168 (197)
                      +.++|
T Consensus       186 l~~~~  190 (320)
T PLN02789        186 ITRSP  190 (320)
T ss_pred             HHhcc
Confidence            98873

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.64  E-value=2.8e-15  Score=108.35  Aligned_cols=108  Identities=18%  Similarity=0.108  Sum_probs=102.5

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 029199           71 EYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHAS  150 (197)
Q Consensus        71 ~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~  150 (197)
                      +.|++++..+|++..+.+.+|..++. .|++++|+..|++++.++|.++.++.++|.++...++ +++|..+|+++++.+
T Consensus         4 ~~~~~~l~~~p~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~   81 (135)
T TIGR02552         4 ATLKDLLGLDSEQLEQIYALAYNLYQ-QGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKE-YEEAIDAYALAAALD   81 (135)
T ss_pred             hhHHHHHcCChhhHHHHHHHHHHHHH-cccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcC
Confidence            56889999999999999999988887 9999999999999999999999999999999999885 999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          151 PEDSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       151 p~~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      |+++..++++|.++...|++++|...+++.
T Consensus        82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  111 (135)
T TIGR02552        82 PDDPRPYFHAAECLLALGEPESALKALDLA  111 (135)
T ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            999999999999999999999999888875

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PLN02789 farnesyltranstransferase

Probab=99.63  E-value=1.8e-15  Score=124.83  Aligned_cols=158  Identities=15%  Similarity=0.070  Sum_probs=134.0

Q ss_pred             CcchhHHH-HHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCC
Q 029199            3 GTALSEEV-KVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENP   81 (197)
Q Consensus         3 ~~~~~~~~-~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P   81 (197)
                      |.+|...+ ++.+++..++.+++.+|++..+|..+|+.+..+|.                  ...++++.+++++++++|
T Consensus        78 ~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~------------------~~~~~el~~~~kal~~dp  139 (320)
T PLN02789         78 RLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGP------------------DAANKELEFTRKILSLDA  139 (320)
T ss_pred             HHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCc------------------hhhHHHHHHHHHHHHhCc
Confidence            55677777 57999999999999999999999999999877521                  124778999999999999


Q ss_pred             CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---cCC---HHHHHHHHHHHHHhCCCCHH
Q 029199           82 GNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWEL---HND---QDRAATYYERAVHASPEDSH  155 (197)
Q Consensus        82 ~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~---~~~---~~~A~~~~~~al~~~p~~~~  155 (197)
                      ++..+|.+++.++.. .|++++|+++++++|+.||+|..+|+.++.++..+   ++.   .++++++..+++.++|+|..
T Consensus       140 kNy~AW~~R~w~l~~-l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~S  218 (320)
T PLN02789        140 KNYHAWSHRQWVLRT-LGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNES  218 (320)
T ss_pred             ccHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcC
Confidence            999999999977776 99999999999999999999999999999988765   221   35789999999999999999


Q ss_pred             HHHHHHHHHHH----cCCccccccCCCc
Q 029199          156 VHASYAGFLWE----TEEDNDECDAPSE  179 (197)
Q Consensus       156 ~~~~la~~~~~----~g~~~ea~~~~~~  179 (197)
                      +|..++.++..    +++..++...+.+
T Consensus       219 aW~Yl~~ll~~~~~~l~~~~~~~~~~~~  246 (320)
T PLN02789        219 PWRYLRGLFKDDKEALVSDPEVSSVCLE  246 (320)
T ss_pred             HHHHHHHHHhcCCcccccchhHHHHHHH
Confidence            99999999988    4455556544444

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.63  E-value=2.6e-15  Score=115.86  Aligned_cols=155  Identities=15%  Similarity=0.096  Sum_probs=138.8

Q ss_pred             CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhC--
Q 029199            3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEEN--   80 (197)
Q Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--   80 (197)
                      |.++...+++.+|+..|....+..|.++..+...|..+..                    .|++++|++.|+++++..  
T Consensus        72 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~--------------------~g~~~~A~~~~~~~~~~~~~  131 (234)
T TIGR02521        72 ALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQ--------------------QGKYEQAMQQFEQAIEDPLY  131 (234)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH--------------------cccHHHHHHHHHHHHhcccc
Confidence            5567778899999999999999999999988888877655                    499999999999999864  


Q ss_pred             CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 029199           81 PGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASY  160 (197)
Q Consensus        81 P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  160 (197)
                      |.....+.++|.++.. .|++++|+..|+++++.+|+++.++..+|.+++..| ++++|..+++++++..|.++..+..+
T Consensus       132 ~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~  209 (234)
T TIGR02521       132 PQPARSLENAGLCALK-AGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRG-QYKDARAYLERYQQTYNQTAESLWLG  209 (234)
T ss_pred             ccchHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            5667889999988777 999999999999999999999999999999999977 59999999999999999999999999


Q ss_pred             HHHHHHcCCccccccCCCc
Q 029199          161 AGFLWETEEDNDECDAPSE  179 (197)
Q Consensus       161 a~~~~~~g~~~ea~~~~~~  179 (197)
                      +.++...|+.+++....+.
T Consensus       210 ~~~~~~~~~~~~a~~~~~~  228 (234)
T TIGR02521       210 IRIARALGDVAAAQRYGAQ  228 (234)
T ss_pred             HHHHHHHhhHHHHHHHHHH
Confidence            9999999999998765444

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.62  E-value=9.2e-15  Score=114.55  Aligned_cols=115  Identities=17%  Similarity=0.098  Sum_probs=107.2

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 029199           63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATY  142 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~  142 (197)
                      .|++.+|+..++++..++|+++.+|..+|.+|-+ .|++++|...|.+++++.|++|.+..|+|..+.-.| |++.|..+
T Consensus       113 ~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq-~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~g-d~~~A~~l  190 (257)
T COG5010         113 NGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQ-LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRG-DLEDAETL  190 (257)
T ss_pred             hcchHHHHHHHHHHhccCCCChhhhhHHHHHHHH-ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcC-CHHHHHHH
Confidence            5999999999999999999999999999966666 999999999999999999999999999999988866 69999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCc
Q 029199          143 YERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSE  179 (197)
Q Consensus       143 ~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~  179 (197)
                      +.++...-+.+..+..|++.+...+|++++|.+...+
T Consensus       191 ll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~  227 (257)
T COG5010         191 LLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ  227 (257)
T ss_pred             HHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence            9999998888999999999999999999999755544

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.60  E-value=3.7e-15  Score=124.59  Aligned_cols=122  Identities=14%  Similarity=0.118  Sum_probs=114.2

Q ss_pred             CcccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 029199           57 FYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQ  136 (197)
Q Consensus        57 ~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~  136 (197)
                      +..+.-.+++++|+.+|++|+++||+...+|...|.-+.. +.+...|++.|++|++++|.|.-+|+.+|.+|--++- .
T Consensus       337 aNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvE-mKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~M-h  414 (559)
T KOG1155|consen  337 ANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVE-MKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKM-H  414 (559)
T ss_pred             hhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHH-hcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcc-h
Confidence            3344556899999999999999999999999999988888 9999999999999999999999999999999999887 5


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          137 DRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       137 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      .=|+-+|++|+++.|+++..|..+|.||.++++.+||+..|.+.
T Consensus       415 ~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykra  458 (559)
T KOG1155|consen  415 FYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRA  458 (559)
T ss_pred             HHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            68999999999999999999999999999999999999988884

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.60  E-value=7e-16  Score=131.57  Aligned_cols=109  Identities=14%  Similarity=0.170  Sum_probs=94.1

Q ss_pred             HHHHHHHHHhCC--CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 029199           70 EEYYKKMVEENP--GNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAV  147 (197)
Q Consensus        70 ~~~~~~al~~~P--~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al  147 (197)
                      .+.|-.+...+|  .++++...||.+++. .|+|++|++||+.||+.+|+|...|+.||-.+....+ .++|+..|.+||
T Consensus       414 ~~~fLeaa~~~~~~~DpdvQ~~LGVLy~l-s~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~-s~EAIsAY~rAL  491 (579)
T KOG1125|consen  414 QELFLEAARQLPTKIDPDVQSGLGVLYNL-SGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNR-SEEAISAYNRAL  491 (579)
T ss_pred             HHHHHHHHHhCCCCCChhHHhhhHHHHhc-chHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcc-cHHHHHHHHHHH
Confidence            455666666777  678888888855554 7899999999999999999999999999999888554 899999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          148 HASPEDSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       148 ~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      ++.|....++||+|..++.+|-|.||...|-+.
T Consensus       492 qLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A  524 (579)
T KOG1125|consen  492 QLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEA  524 (579)
T ss_pred             hcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence            999999999999999999999999998777653

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.59  E-value=4.6e-14  Score=118.33  Aligned_cols=105  Identities=17%  Similarity=0.168  Sum_probs=99.8

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 029199           63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATY  142 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~  142 (197)
                      .|++++|+.+|+++++++|+++.+|+++|.++.. .|++++|+.++++++.++|+++.+++++|.+++.+|+ +++|+.+
T Consensus        15 ~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~-~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~-~~eA~~~   92 (356)
T PLN03088         15 DDDFALAVDLYTQAIDLDPNNAELYADRAQANIK-LGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE-YQTAKAA   92 (356)
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC-HHHHHHH
Confidence            5999999999999999999999999999988887 9999999999999999999999999999999999885 9999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 029199          143 YERAVHASPEDSHVHASYAGFLWETEE  169 (197)
Q Consensus       143 ~~~al~~~p~~~~~~~~la~~~~~~g~  169 (197)
                      |+++++++|+++.++..++.|..++.+
T Consensus        93 ~~~al~l~P~~~~~~~~l~~~~~kl~~  119 (356)
T PLN03088         93 LEKGASLAPGDSRFTKLIKECDEKIAE  119 (356)
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence            999999999999999999999777743

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.59  E-value=3.2e-15  Score=125.81  Aligned_cols=177  Identities=15%  Similarity=0.032  Sum_probs=141.4

Q ss_pred             CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCC-------CCCCCCCC-----------CcccCCCC
Q 029199            3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGG-------GTGGGGSG-----------FYPAGSGG   64 (197)
Q Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~-------~~~~~~~~-----------~~~~~~~g   64 (197)
                      |..+...+++.+|+..|..+.+.+|+++.+++..|..+...|.+..       .-..|...           +..+...|
T Consensus        42 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g  121 (389)
T PRK11788         42 GLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG  121 (389)
T ss_pred             HHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence            5566677889999999999999999999999888877766665322       01112111           22445569


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHHHcCCHHHH
Q 029199           65 DSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGE-----ILSQYAKLVWELHNDQDRA  139 (197)
Q Consensus        65 ~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~-----~~~~lg~~l~~~~~~~~~A  139 (197)
                      ++++|++.|+++++.+|.+..++..++.++.. .|++++|++.++++++.+|.+..     .+..+|.++...+ ++++|
T Consensus       122 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~A  199 (389)
T PRK11788        122 LLDRAEELFLQLVDEGDFAEGALQQLLEIYQQ-EKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARG-DLDAA  199 (389)
T ss_pred             CHHHHHHHHHHHHcCCcchHHHHHHHHHHHHH-hchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCC-CHHHH
Confidence            99999999999999999999999999977776 89999999999999988887643     5667888888867 48999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCccc
Q 029199          140 ATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSELD  181 (197)
Q Consensus       140 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~~  181 (197)
                      +.+|+++++.+|++..+++.+|.++.+.|++++|...++++.
T Consensus       200 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  241 (389)
T PRK11788        200 RALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVE  241 (389)
T ss_pred             HHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            999999999999999999999999999999999988888753

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.58  E-value=3.1e-14  Score=104.80  Aligned_cols=86  Identities=10%  Similarity=-0.021  Sum_probs=67.0

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 029199           63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATY  142 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~  142 (197)
                      .|++++|.+.|+.+..+||.+...|++||.++.. +|++.+|+.+|.+++.++|+||..+++.|.++..+|+ .+.|++.
T Consensus        48 ~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~-~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~-~~~A~~a  125 (157)
T PRK15363         48 VKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQA-QKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDN-VCYAIKA  125 (157)
T ss_pred             CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-HhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCC-HHHHHHH
Confidence            5788888888888888888888888888855555 7888888888888888888888888888888777774 7788888


Q ss_pred             HHHHHHhC
Q 029199          143 YERAVHAS  150 (197)
Q Consensus       143 ~~~al~~~  150 (197)
                      |+.++...
T Consensus       126 F~~Ai~~~  133 (157)
T PRK15363        126 LKAVVRIC  133 (157)
T ss_pred             HHHHHHHh
Confidence            88887776

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.58  E-value=1.2e-14  Score=131.97  Aligned_cols=174  Identities=13%  Similarity=-0.008  Sum_probs=83.3

Q ss_pred             cchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCC--------CCCCCCCCC------cccCCCCCHHHH
Q 029199            4 TALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGG--------GTGGGGSGF------YPAGSGGDSQGV   69 (197)
Q Consensus         4 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~--------~~~~~~~~~------~~~~~~g~~~~A   69 (197)
                      .++-..+++.+|+..|..+++.+|.++..++..+..+...|.+..        ....|....      ..+...|++++|
T Consensus       133 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A  212 (899)
T TIGR02917       133 LAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELA  212 (899)
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHH
Confidence            344455566666666666666666666666665555444332111        011122111      112223444455


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 029199           70 EEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHA  149 (197)
Q Consensus        70 ~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~  149 (197)
                      +..|+++++.+|+++.++..++.++.. .|++++|...++++++..|+++.+++..|.+++..| ++++|+..|+++++.
T Consensus       213 ~~~~~~a~~~~p~~~~~~~~~~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~  290 (899)
T TIGR02917       213 LAAYRKAIALRPNNPAVLLALATILIE-AGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKK-NYEDARETLQDALKS  290 (899)
T ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhc-CHHHHHHHHHHHHHh
Confidence            555555544455444444444444443 444555555555544444444444444444444444 245555555555555


Q ss_pred             CCCCHHHHHHHHHHHHHcCCccccccCCCc
Q 029199          150 SPEDSHVHASYAGFLWETEEDNDECDAPSE  179 (197)
Q Consensus       150 ~p~~~~~~~~la~~~~~~g~~~ea~~~~~~  179 (197)
                      +|++...++.+|.++..+|++++|...+++
T Consensus       291 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~  320 (899)
T TIGR02917       291 APEYLPALLLAGASEYQLGNLEQAYQYLNQ  320 (899)
T ss_pred             CCCchhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            555555555555555555555555444444

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.58  E-value=1.7e-14  Score=106.15  Aligned_cols=103  Identities=12%  Similarity=0.075  Sum_probs=96.4

Q ss_pred             HHHhC-CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 029199           76 MVEEN-PGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDS  154 (197)
Q Consensus        76 al~~~-P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~  154 (197)
                      +..++ ++.-+..+.+|..++. .|++++|+..|+-...+||.++..|+++|.++..+|+ +++|+++|.+|+.++|++|
T Consensus        26 l~~~~~~~~l~~lY~~A~~ly~-~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~-~~~AI~aY~~A~~L~~ddp  103 (157)
T PRK15363         26 LLDDDVTQPLNTLYRYAMQLME-VKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKH-WGEAIYAYGRAAQIKIDAP  103 (157)
T ss_pred             HHCCChHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhh-HHHHHHHHHHHHhcCCCCc
Confidence            35677 8888899999988887 9999999999999999999999999999999999885 9999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCccccccCCCcc
Q 029199          155 HVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       155 ~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      ..++++|.|+...|+.++|.+.|+..
T Consensus       104 ~~~~~ag~c~L~lG~~~~A~~aF~~A  129 (157)
T PRK15363        104 QAPWAAAECYLACDNVCYAIKALKAV  129 (157)
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            99999999999999999999999874

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.57  E-value=6e-15  Score=124.02  Aligned_cols=150  Identities=16%  Similarity=0.181  Sum_probs=124.5

Q ss_pred             HHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 029199            9 EVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLS   88 (197)
Q Consensus         9 ~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~   88 (197)
                      ...+++|+..|+++++.+|++.-.++..+..+.+                    .++++++.+.|+++.+..|+.++++.
T Consensus       407 L~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr--------------------~~k~~~~m~~Fee~kkkFP~~~Evy~  466 (606)
T KOG0547|consen  407 LQQYEEAIADFQKAISLDPENAYAYIQLCCALYR--------------------QHKIAESMKTFEEAKKKFPNCPEVYN  466 (606)
T ss_pred             HHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHhCCCCchHHH
Confidence            3455566666666666666665555555555554                    37888899999999999999999998


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 029199           89 NYAQFLYQSKQDLPKAEEYYSRAILADPG------DGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAG  162 (197)
Q Consensus        89 ~la~~l~~~~g~~~~A~~~~~~al~l~P~------~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  162 (197)
                      -.|.++.. +++|++|++.|++|+.+.|.      ++..+.+.|.++.+-.+|+.+|+.++++|+++||....++-.+|.
T Consensus       467 ~fAeiLtD-qqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq  545 (606)
T KOG0547|consen  467 LFAEILTD-QQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQ  545 (606)
T ss_pred             HHHHHHhh-HHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHH
Confidence            88888887 89999999999999999999      888888888777766678999999999999999999999999999


Q ss_pred             HHHHcCCccccccCCCc
Q 029199          163 FLWETEEDNDECDAPSE  179 (197)
Q Consensus       163 ~~~~~g~~~ea~~~~~~  179 (197)
                      +..++|+.++|++.|+.
T Consensus       546 ~~lQ~~~i~eAielFEk  562 (606)
T KOG0547|consen  546 FELQRGKIDEAIELFEK  562 (606)
T ss_pred             HHHHHhhHHHHHHHHHH
Confidence            99999999999999887

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.56  E-value=2e-14  Score=120.92  Aligned_cols=175  Identities=17%  Similarity=0.056  Sum_probs=127.8

Q ss_pred             CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCC--------CCCCCCCCC-----------cccCCC
Q 029199            3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGG--------GTGGGGSGF-----------YPAGSG   63 (197)
Q Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~--------~~~~~~~~~-----------~~~~~~   63 (197)
                      |.++...|++.+|+..|..+.+..|.+...+...+..+...|....        ....|....           ..+...
T Consensus       114 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~  193 (389)
T PRK11788        114 GQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALAR  193 (389)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhC
Confidence            4455566777777777777777777766666665555544443221        011121111           122346


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcCCHHHHHHH
Q 029199           64 GDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGD-GEILSQYAKLVWELHNDQDRAATY  142 (197)
Q Consensus        64 g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~-~~~~~~lg~~l~~~~~~~~~A~~~  142 (197)
                      |++++|++.|+++++.+|++..++..+|.++.. .|++++|++.|+++++.+|.+ +.++..++.++...|+ +++|...
T Consensus       194 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~-~~~A~~~  271 (389)
T PRK11788        194 GDLDAARALLKKALAADPQCVRASILLGDLALA-QGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGD-EAEGLEF  271 (389)
T ss_pred             CCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCC-HHHHHHH
Confidence            889999999999999999988888888877776 899999999999999888876 4567788888888774 8999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          143 YERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       143 ~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      ++++++..|+... +..++.++.+.|++++|...+++.
T Consensus       272 l~~~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~  308 (389)
T PRK11788        272 LRRALEEYPGADL-LLALAQLLEEQEGPEAAQALLREQ  308 (389)
T ss_pred             HHHHHHhCCCchH-HHHHHHHHHHhCCHHHHHHHHHHH
Confidence            9999988887654 488899999999999988877764

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.56  E-value=4.6e-14  Score=128.96  Aligned_cols=153  Identities=11%  Similarity=0.012  Sum_probs=137.4

Q ss_pred             hHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHH
Q 029199            7 SEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLF   86 (197)
Q Consensus         7 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~   86 (197)
                      .-.|+..+|+..+......+|..+..+...+..+..                    .|++++|++.|+++++++|+++.+
T Consensus        26 ~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~--------------------~g~~~~A~~~~~~al~~~P~~~~a   85 (765)
T PRK10049         26 LWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRN--------------------LKQWQNSLTLWQKALSLEPQNDDY   85 (765)
T ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHHhCCCCHHH
Confidence            345677888888888777788888888888887766                    499999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 029199           87 LSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWE  166 (197)
Q Consensus        87 ~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  166 (197)
                      +..++.++.. .|++++|+..++++++.+|+++. +..+|.++...|+ +++|+..|+++++++|+++.++..++.++..
T Consensus        86 ~~~la~~l~~-~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~-~~~Al~~l~~al~~~P~~~~~~~~la~~l~~  162 (765)
T PRK10049         86 QRGLILTLAD-AGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGR-HWDELRAMTQALPRAPQTQQYPTEYVQALRN  162 (765)
T ss_pred             HHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            9999977777 99999999999999999999999 9999999999885 9999999999999999999999999999999


Q ss_pred             cCCccccccCCCcccc
Q 029199          167 TEEDNDECDAPSELDS  182 (197)
Q Consensus       167 ~g~~~ea~~~~~~~~~  182 (197)
                      .|..++|...+++++.
T Consensus       163 ~~~~e~Al~~l~~~~~  178 (765)
T PRK10049        163 NRLSAPALGAIDDANL  178 (765)
T ss_pred             CCChHHHHHHHHhCCC
Confidence            9999998877776543

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.52  E-value=2.8e-14  Score=113.86  Aligned_cols=112  Identities=14%  Similarity=0.109  Sum_probs=104.6

Q ss_pred             CCcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCC
Q 029199            2 AGTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENP   81 (197)
Q Consensus         2 ~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P   81 (197)
                      .|+-+=+++++.+|+..|+++++.+|.++-.|+.|.-++..+                    |.++.|++..+.+|.+||
T Consensus        87 eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~L--------------------g~~~~AVkDce~Al~iDp  146 (304)
T KOG0553|consen   87 EGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKL--------------------GEYEDAVKDCESALSIDP  146 (304)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHh--------------------cchHHHHHHHHHHHhcCh
Confidence            467777899999999999999999999999999999999886                    999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 029199           82 GNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHN  134 (197)
Q Consensus        82 ~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~  134 (197)
                      ++..+|..||..++. +|++.+|++.|+++|.++|+|..++.++.++-..++.
T Consensus       147 ~yskay~RLG~A~~~-~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e  198 (304)
T KOG0553|consen  147 HYSKAYGRLGLAYLA-LGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNE  198 (304)
T ss_pred             HHHHHHHHHHHHHHc-cCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence            999999999988777 9999999999999999999999999999988776664

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.52  E-value=2.3e-14  Score=120.54  Aligned_cols=117  Identities=17%  Similarity=0.215  Sum_probs=111.0

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 029199           62 SGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAAT  141 (197)
Q Consensus        62 ~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~  141 (197)
                      +..+.++-.+.|.+|..+||+++++|+.+|.+.+. ++++++|+..|+++++++|.+...+..++.+++++++ ++++..
T Consensus       372 d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~fl-L~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k-~~~~m~  449 (606)
T KOG0547|consen  372 DENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFL-LQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHK-IAESMK  449 (606)
T ss_pred             hhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHH-HHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHH-HHHHHH
Confidence            35888999999999999999999999999999888 9999999999999999999999999999999999896 999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          142 YYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       142 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      .|+.+.+..|+-++++...|.++..++++++|++.|...
T Consensus       450 ~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~a  488 (606)
T KOG0547|consen  450 TFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKA  488 (606)
T ss_pred             HHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHH
Confidence            999999999999999999999999999999998888773

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.49  E-value=1.8e-13  Score=125.15  Aligned_cols=171  Identities=13%  Similarity=0.045  Sum_probs=136.2

Q ss_pred             hhHHHHHHHHhhhcCcccccCCCCh---hhHHhhhcccCCCCCCCC--------CCCCCCCC----------CcccCCCC
Q 029199            6 LSEEVKVMEALWNAGFEQERGTVGQ---EMYLAKGLGVGGRGGRGG--------GTGGGGSG----------FYPAGSGG   64 (197)
Q Consensus         6 ~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~~g~~~~~~~~~~~--------~~~~~~~~----------~~~~~~~g   64 (197)
                      +-+.++..+|+..|..+++..|..|   ..++  |..+...|...+        ....|...          ...+...|
T Consensus       247 Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~l--a~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g  324 (765)
T PRK10049        247 LLARDRYKDVISEYQRLKAEGQIIPPWAQRWV--ASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESE  324 (765)
T ss_pred             HHHhhhHHHHHHHHHHhhccCCCCCHHHHHHH--HHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcc
Confidence            4466899999999999888864433   3333  444444454322        11223221          11335679


Q ss_pred             CHHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 029199           65 DSQGVEEYYKKMVEENPG---------------NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLV  129 (197)
Q Consensus        65 ~~~~A~~~~~~al~~~P~---------------~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l  129 (197)
                      ++++|++.++++...+|.               ...++..++.++.. .|++++|+..+++++...|+++.++..+|.++
T Consensus       325 ~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~-~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~  403 (765)
T PRK10049        325 NYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKY-SNDLPQAEMRARELAYNAPGNQGLRIDYASVL  403 (765)
T ss_pred             cHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            999999999999999873               24567788877776 99999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          130 WELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       130 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      ...|+ +++|++.+++++.++|+++.+++.+|.++..+|++++|+..++++
T Consensus       404 ~~~g~-~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~l  453 (765)
T PRK10049        404 QARGW-PRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDV  453 (765)
T ss_pred             HhcCC-HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            99885 999999999999999999999999999999999999998888775

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.49  E-value=4.5e-13  Score=105.68  Aligned_cols=132  Identities=13%  Similarity=0.101  Sum_probs=113.2

Q ss_pred             CCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhcCCHHH
Q 029199           27 TVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNP---LFLSNYAQFLYQSKQDLPK  103 (197)
Q Consensus        27 p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~---~~~~~la~~l~~~~g~~~~  103 (197)
                      +..+..++..|..+..                    .|++++|+..|+++++.+|+++   .+++.+|.+++. .|++++
T Consensus        30 ~~~~~~~~~~g~~~~~--------------------~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~-~~~~~~   88 (235)
T TIGR03302        30 EWPAEELYEEAKEALD--------------------SGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYK-SGDYAE   88 (235)
T ss_pred             cCCHHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHh-cCCHHH
Confidence            4455666666666544                    4999999999999999999986   578999988887 999999


Q ss_pred             HHHHHHHHHHhCCCCHH---HHHHHHHHHHHH--------cCCHHHHHHHHHHHHHhCCCCHHHH---------------
Q 029199          104 AEEYYSRAILADPGDGE---ILSQYAKLVWEL--------HNDQDRAATYYERAVHASPEDSHVH---------------  157 (197)
Q Consensus       104 A~~~~~~al~l~P~~~~---~~~~lg~~l~~~--------~~~~~~A~~~~~~al~~~p~~~~~~---------------  157 (197)
                      |+..|+++++.+|+++.   +++.+|.+++..        + ++++|++.|+++++.+|++...+               
T Consensus        89 A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~  167 (235)
T TIGR03302        89 AIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQT-AAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAG  167 (235)
T ss_pred             HHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHH-HHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHH
Confidence            99999999999999887   689999999875        5 48999999999999999987653               


Q ss_pred             --HHHHHHHHHcCCccccccCCCcc
Q 029199          158 --ASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       158 --~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                        ..+|.++.+.|++++|...++++
T Consensus       168 ~~~~~a~~~~~~g~~~~A~~~~~~a  192 (235)
T TIGR03302       168 KELYVARFYLKRGAYVAAINRFETV  192 (235)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHH
Confidence              46788999999999998888775

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.47  E-value=4.3e-14  Score=114.56  Aligned_cols=175  Identities=18%  Similarity=0.108  Sum_probs=101.6

Q ss_pred             CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCC----------CCCCCCCC---cccCCCCCHHHH
Q 029199            3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGG----------TGGGGSGF---YPAGSGGDSQGV   69 (197)
Q Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~----------~~~~~~~~---~~~~~~g~~~~A   69 (197)
                      |......++..+|+..+..++..++.++..+...+.- ...+.+...          ...|....   ..+...++++++
T Consensus        51 a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~  129 (280)
T PF13429_consen   51 ADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEA  129 (280)
T ss_dssp             --------------------------------------------------------------------H-HHHTT-HHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHH
Confidence            3445567788889999999988888877664433222 222322210          01111111   122345999999


Q ss_pred             HHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 029199           70 EEYYKKMVEEN--PGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAV  147 (197)
Q Consensus        70 ~~~~~~al~~~--P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al  147 (197)
                      ...++++....  |.++.+|..+|.++.. .|+.++|+.+|+++++++|+|+.++..+++++...|+ .+++.+.++...
T Consensus       130 ~~~l~~~~~~~~~~~~~~~~~~~a~~~~~-~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~-~~~~~~~l~~~~  207 (280)
T PF13429_consen  130 EELLEKLEELPAAPDSARFWLALAEIYEQ-LGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGD-YDEAREALKRLL  207 (280)
T ss_dssp             HHHHHHHHH-T---T-HHHHHHHHHHHHH-CCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCH-HHHHHHHHHHHH
T ss_pred             HHHHHHHHhccCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCC-hHHHHHHHHHHH
Confidence            99999987766  7889999999987777 9999999999999999999999999999999999785 899999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          148 HASPEDSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       148 ~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      +..|+++..|..+|.++..+|++++|...+++.
T Consensus       208 ~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~  240 (280)
T PF13429_consen  208 KAAPDDPDLWDALAAAYLQLGRYEEALEYLEKA  240 (280)
T ss_dssp             HH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHH
T ss_pred             HHCcCHHHHHHHHHHHhcccccccccccccccc
Confidence            988999999999999999999999999998885

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.45  E-value=3.7e-13  Score=115.14  Aligned_cols=123  Identities=12%  Similarity=0.132  Sum_probs=108.2

Q ss_pred             CChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q 029199           28 VGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEY  107 (197)
Q Consensus        28 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~  107 (197)
                      .||.++...|+-+..                    .|+|++|+.||+.||+.+|+|...|+.||..+.. ..+..+|+..
T Consensus       428 ~DpdvQ~~LGVLy~l--------------------s~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN-~~~s~EAIsA  486 (579)
T KOG1125|consen  428 IDPDVQSGLGVLYNL--------------------SGEFDRAVDCFEAALQVKPNDYLLWNRLGATLAN-GNRSEEAISA  486 (579)
T ss_pred             CChhHHhhhHHHHhc--------------------chHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcC-CcccHHHHHH
Confidence            466666666666554                    5999999999999999999999999999988887 8899999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHcCCccc
Q 029199          108 YSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPE----------DSHVHASYAGFLWETEEDND  172 (197)
Q Consensus       108 ~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~----------~~~~~~~la~~~~~~g~~~e  172 (197)
                      |.+||++.|...-+++|+|+.+..+| .|++|.++|-.||.+.+.          +..+|..|-.++.-+++.|-
T Consensus       487 Y~rALqLqP~yVR~RyNlgIS~mNlG-~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~  560 (579)
T KOG1125|consen  487 YNRALQLQPGYVRVRYNLGISCMNLG-AYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDL  560 (579)
T ss_pred             HHHHHhcCCCeeeeehhhhhhhhhhh-hHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchH
Confidence            99999999999999999999999999 599999999999998754          23588888888888888873

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.44  E-value=1e-12  Score=102.73  Aligned_cols=146  Identities=14%  Similarity=0.089  Sum_probs=119.1

Q ss_pred             CCCcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhC
Q 029199            1 MAGTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEEN   80 (197)
Q Consensus         1 ~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~   80 (197)
                      |+|+.|.-.+...+|+.-|+..++.+|.|..++-.+-..+-.                    .|+.-+|++.+.+-++..
T Consensus        91 lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka--------------------~GK~l~aIk~ln~YL~~F  150 (289)
T KOG3060|consen   91 LKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKA--------------------QGKNLEAIKELNEYLDKF  150 (289)
T ss_pred             HHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHH--------------------cCCcHHHHHHHHHHHHHh
Confidence            467778888888888888888888888888887744333333                    377778999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHH
Q 029199           81 PGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHN--DQDRAATYYERAVHASPEDSHVHA  158 (197)
Q Consensus        81 P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~--~~~~A~~~~~~al~~~p~~~~~~~  158 (197)
                      |+|.++|..++.+|.. .|+|.+|.-||++.+=+.|.+|.....+|.+++.+|+  +++-|.++|.++++++|.+...++
T Consensus       151 ~~D~EAW~eLaeiY~~-~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~  229 (289)
T KOG3060|consen  151 MNDQEAWHELAEIYLS-EGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALF  229 (289)
T ss_pred             cCcHHHHHHHHHHHHh-HhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHH
Confidence            9999999999988887 8999999999999999999999999999998888776  255788999999999998888887


Q ss_pred             HHHHHHHHc
Q 029199          159 SYAGFLWET  167 (197)
Q Consensus       159 ~la~~~~~~  167 (197)
                      .+-.|-..+
T Consensus       230 GI~lc~~~l  238 (289)
T KOG3060|consen  230 GIYLCGSAL  238 (289)
T ss_pred             HHHHHHHHH
Confidence            766654443

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.44  E-value=7e-13  Score=84.93  Aligned_cols=69  Identities=28%  Similarity=0.404  Sum_probs=64.2

Q ss_pred             CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 029199           82 GNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASP  151 (197)
Q Consensus        82 ~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p  151 (197)
                      +++.+|..+|.+++. .|++++|+.+|+++++++|+++.+++++|.++..+++++++|+++++++++++|
T Consensus         1 e~a~~~~~~g~~~~~-~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    1 ENAEAWYNLGQIYFQ-QGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             TSHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             CHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            367899999988888 999999999999999999999999999999999987338999999999999998

...

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.42  E-value=4.2e-13  Score=114.57  Aligned_cols=169  Identities=20%  Similarity=0.217  Sum_probs=141.0

Q ss_pred             HHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCC-------------CCCCCC-CCCcccCCCCCHHHHHHHHH
Q 029199            9 EVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGG-------------GTGGGG-SGFYPAGSGGDSQGVEEYYK   74 (197)
Q Consensus         9 ~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~-------------~~~~~~-~~~~~~~~~g~~~~A~~~~~   74 (197)
                      -++..+|-.-|+++--.+|.=.+.|++-|..+..-|--+.             |.--|. +.+..++..++++.|.+.|.
T Consensus       325 i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~  404 (611)
T KOG1173|consen  325 IGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFK  404 (611)
T ss_pred             hcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHH
Confidence            3677788888888888888888999998888765442111             111222 34667788899999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh----CCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 029199           75 KMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILA----DPGD---GEILSQYAKLVWELHNDQDRAATYYERAV  147 (197)
Q Consensus        75 ~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l----~P~~---~~~~~~lg~~l~~~~~~~~~A~~~~~~al  147 (197)
                      +|+.+.|++|.++..+|.+.|. .+.+.+|..+|+.++..    .+..   ...+.|+|.++.++++ +++|+.+|+++|
T Consensus       405 ~A~ai~P~Dplv~~Elgvvay~-~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~-~~eAI~~~q~aL  482 (611)
T KOG1173|consen  405 QALAIAPSDPLVLHELGVVAYT-YEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNK-YEEAIDYYQKAL  482 (611)
T ss_pred             HHHhcCCCcchhhhhhhheeeh-HhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhh-HHHHHHHHHHHH
Confidence            9999999999999999977776 89999999999999933    2222   3458999999999997 899999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHcCCccccccCCCc
Q 029199          148 HASPEDSHVHASYAGFLWETEEDNDECDAPSE  179 (197)
Q Consensus       148 ~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~  179 (197)
                      .+.|.++.++...|.++..+|+++.|++.|.+
T Consensus       483 ~l~~k~~~~~asig~iy~llgnld~Aid~fhK  514 (611)
T KOG1173|consen  483 LLSPKDASTHASIGYIYHLLGNLDKAIDHFHK  514 (611)
T ss_pred             HcCCCchhHHHHHHHHHHHhcChHHHHHHHHH
Confidence            99999999999999999999999999999887

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.41  E-value=1.7e-12  Score=116.72  Aligned_cols=134  Identities=12%  Similarity=-0.017  Sum_probs=122.1

Q ss_pred             cchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCC
Q 029199            4 TALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGN   83 (197)
Q Consensus         4 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~   83 (197)
                      -+..+-|+..||+..+..+.+..|++...+...+..+-..                    +++++|+..+++++..+|++
T Consensus        94 ~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~--------------------~~~eeA~~~~~~~l~~~p~~  153 (694)
T PRK15179         94 RALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQ--------------------QGIEAGRAEIELYFSGGSSS  153 (694)
T ss_pred             HHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh--------------------ccHHHHHHHHHHHhhcCCCC
Confidence            3556778889999999999999999999999999999884                    99999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 029199           84 PLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHAS  159 (197)
Q Consensus        84 ~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  159 (197)
                      +.+++.+|.++.. .|++++|+.+|+++++.+|+++.++.++|.++...|+ .++|...|+++++...+-...+.+
T Consensus       154 ~~~~~~~a~~l~~-~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~-~~~A~~~~~~a~~~~~~~~~~~~~  227 (694)
T PRK15179        154 AREILLEAKSWDE-IGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGA-LWRARDVLQAGLDAIGDGARKLTR  227 (694)
T ss_pred             HHHHHHHHHHHHH-hcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhhCcchHHHHH
Confidence            9999999988777 9999999999999999999999999999999999885 999999999999998765555433

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.40  E-value=5.6e-13  Score=110.95  Aligned_cols=159  Identities=18%  Similarity=0.028  Sum_probs=117.6

Q ss_pred             CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCC
Q 029199            3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPG   82 (197)
Q Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~   82 (197)
                      |.++-..+++.+|+..+...++..|.++..+.. ++.+...|.                ..+....+.+.+......+|.
T Consensus        50 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~----------------~~~~~~~~~~~l~~~~~~~~~  112 (355)
T cd05804          50 ALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGD----------------FSGMRDHVARVLPLWAPENPD  112 (355)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcc----------------cccCchhHHHHHhccCcCCCC
Confidence            344555677888888888888888888866553 333322211                024455566666555566777


Q ss_pred             CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHH
Q 029199           83 NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDS----HVHA  158 (197)
Q Consensus        83 ~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~----~~~~  158 (197)
                      ...++..+|.++.. .|++++|+..++++++++|+++.++..+|.+++..|+ +++|+.++++++...|.++    ..+.
T Consensus       113 ~~~~~~~~a~~~~~-~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~-~~eA~~~l~~~l~~~~~~~~~~~~~~~  190 (355)
T cd05804         113 YWYLLGMLAFGLEE-AGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGR-FKEGIAFMESWRDTWDCSSMLRGHNWW  190 (355)
T ss_pred             cHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC-HHHHHHHHHhhhhccCCCcchhHHHHH
Confidence            77777778866666 8999999999999999999999999999999888775 8999999999998876443    3466


Q ss_pred             HHHHHHHHcCCccccccCCCcc
Q 029199          159 SYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       159 ~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      .++.++..+|++++|...+++.
T Consensus       191 ~la~~~~~~G~~~~A~~~~~~~  212 (355)
T cd05804         191 HLALFYLERGDYEAALAIYDTH  212 (355)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHH
Confidence            7899999999999988777764

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.40  E-value=2.4e-12  Score=101.05  Aligned_cols=146  Identities=14%  Similarity=0.086  Sum_probs=124.9

Q ss_pred             HHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 029199           11 KVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNY   90 (197)
Q Consensus        11 ~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~l   90 (197)
                      +...++..+-...+++|++..+ ....-.+..                    .|+-+.+..+..+.+..+|.+..++..+
T Consensus        48 q~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~--------------------~G~a~~~l~~~~~~~~~~~~d~~ll~~~  106 (257)
T COG5010          48 QTQGAAAALGAAVLRNPEDLSI-AKLATALYL--------------------RGDADSSLAVLQKSAIAYPKDRELLAAQ  106 (257)
T ss_pred             hhhHHHHHHHHHHhcCcchHHH-HHHHHHHHh--------------------cccccchHHHHhhhhccCcccHHHHHHH
Confidence            3444555555556677877777 333333333                    3778889999999999999999999889


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc
Q 029199           91 AQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEED  170 (197)
Q Consensus        91 a~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  170 (197)
                      |..... .|++.+|+..++++..++|+|..+|..+|.+|-+.|+ +++|...|.+++++.|+++.+..|+|..+.-.|++
T Consensus       107 gk~~~~-~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr-~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~  184 (257)
T COG5010         107 GKNQIR-NGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGR-FDEARRAYRQALELAPNEPSIANNLGMSLLLRGDL  184 (257)
T ss_pred             HHHHHH-hcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccC-hhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCH
Confidence            977777 9999999999999999999999999999999999996 89999999999999999999999999999999999


Q ss_pred             cccccCCCc
Q 029199          171 NDECDAPSE  179 (197)
Q Consensus       171 ~ea~~~~~~  179 (197)
                      +.|+..+.+
T Consensus       185 ~~A~~lll~  193 (257)
T COG5010         185 EDAETLLLP  193 (257)
T ss_pred             HHHHHHHHH
Confidence            999877766

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.39  E-value=1.3e-11  Score=86.45  Aligned_cols=94  Identities=14%  Similarity=0.236  Sum_probs=83.1

Q ss_pred             CCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCH
Q 029199           63 GGDSQGVEEYYKKMVEENPGN---PLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGD---GEILSQYAKLVWELHNDQ  136 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~P~~---~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~---~~~~~~lg~~l~~~~~~~  136 (197)
                      .|++++|++.|+++++.+|++   +.+++.+|.+++. .|++++|+.+|++++..+|++   +.+++.+|.++...++ +
T Consensus        15 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-~   92 (119)
T TIGR02795        15 AGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYA-QGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGD-K   92 (119)
T ss_pred             cCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCC-h
Confidence            499999999999999999887   5688889988887 999999999999999998886   6789999999999885 8


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHH
Q 029199          137 DRAATYYERAVHASPEDSHVHA  158 (197)
Q Consensus       137 ~~A~~~~~~al~~~p~~~~~~~  158 (197)
                      ++|+.+++++++..|+++.+..
T Consensus        93 ~~A~~~~~~~~~~~p~~~~~~~  114 (119)
T TIGR02795        93 EKAKATLQQVIKRYPGSSAAKL  114 (119)
T ss_pred             HHHHHHHHHHHHHCcCChhHHH
Confidence            9999999999999999887543

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.39  E-value=5.8e-12  Score=100.97  Aligned_cols=117  Identities=15%  Similarity=0.112  Sum_probs=108.3

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC--CHHHHH
Q 029199           63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHN--DQDRAA  140 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~--~~~~A~  140 (197)
                      ..+.+.-+.-++.-++.||+|++-|..||.++.. +|+++.|...|++|+++.|+|++++..+|.+++...+  +..++.
T Consensus       135 ~~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~-~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~  213 (287)
T COG4235         135 EQEMEALIARLETHLQQNPGDAEGWDLLGRAYMA-LGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKAR  213 (287)
T ss_pred             cccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHH-hcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHH
Confidence            3568899999999999999999999999988888 9999999999999999999999999999998876554  356999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          141 TYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       141 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      ..|++++++||+|..+.+.+|..++++|++.+|....+.+
T Consensus       214 ~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~l  253 (287)
T COG4235         214 ALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQML  253 (287)
T ss_pred             HHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence            9999999999999999999999999999999998888876

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.38  E-value=5.8e-12  Score=107.10  Aligned_cols=110  Identities=17%  Similarity=0.213  Sum_probs=103.1

Q ss_pred             CcccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 029199           57 FYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQ  136 (197)
Q Consensus        57 ~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~  136 (197)
                      |..+...|+|..|+..|.++|+.+|+|+..+.|+|.++.. .+.+..|+...+++++++|+.+..|...|.++..+.+ |
T Consensus       365 Gne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~k-L~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~-y  442 (539)
T KOG0548|consen  365 GNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLK-LGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKE-Y  442 (539)
T ss_pred             HHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHH-HhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH-H
Confidence            4456667999999999999999999999999999977777 9999999999999999999999999999999999996 9


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 029199          137 DRAATYYERAVHASPEDSHVHASYAGFLWETE  168 (197)
Q Consensus       137 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  168 (197)
                      ++|++.|+.+++.+|++.++...+..|+..+.
T Consensus       443 dkAleay~eale~dp~~~e~~~~~~rc~~a~~  474 (539)
T KOG0548|consen  443 DKALEAYQEALELDPSNAEAIDGYRRCVEAQR  474 (539)
T ss_pred             HHHHHHHHHHHhcCchhHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999998753

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.37  E-value=9.5e-12  Score=104.95  Aligned_cols=114  Identities=18%  Similarity=0.220  Sum_probs=107.0

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 029199           63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATY  142 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~  142 (197)
                      .|++++|++.++.+++..|+|+..+-..+.++.. .++.++|.+.+++++.++|+.+..+.++|.+|.+.|+ +++|+..
T Consensus       319 ~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~-~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~-~~eai~~  396 (484)
T COG4783         319 AGQYDEALKLLQPLIAAQPDNPYYLELAGDILLE-ANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGK-PQEAIRI  396 (484)
T ss_pred             hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCC-hHHHHHH
Confidence            5999999999999999999999999999988888 9999999999999999999999999999999999775 9999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCC
Q 029199          143 YERAVHASPEDSHVHASYAGFLWETEEDNDECDAPS  178 (197)
Q Consensus       143 ~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~  178 (197)
                      +.+.+..+|+++..|..++..|..+|+..++.....
T Consensus       397 L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~A  432 (484)
T COG4783         397 LNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARA  432 (484)
T ss_pred             HHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHH
Confidence            999999999999999999999999999988754443

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.35  E-value=2.6e-11  Score=91.55  Aligned_cols=120  Identities=20%  Similarity=0.310  Sum_probs=97.1

Q ss_pred             CCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHH
Q 029199           26 GTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGN---PLFLSNYAQFLYQSKQDLP  102 (197)
Q Consensus        26 ~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~---~~~~~~la~~l~~~~g~~~  102 (197)
                      .+..+..++..|..+..                    .|++++|+.+|++++++.|+.   ..++.++|.++.. .|+++
T Consensus        31 ~~~~a~~~~~lg~~~~~--------------------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~-~g~~~   89 (172)
T PRK02603         31 KAKEAFVYYRDGMSAQA--------------------DGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYAS-NGEHD   89 (172)
T ss_pred             HhhhHHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHH
Confidence            44566677777777655                    499999999999999988764   4689999977777 99999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 029199          103 KAEEYYSRAILADPGDGEILSQYAKLVWELHND-------------QDRAATYYERAVHASPEDSHVHASYAGFLWETEE  169 (197)
Q Consensus       103 ~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~-------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  169 (197)
                      +|+..|+++++.+|+++..+.++|.++...++.             +++|+++++++++.+|++   +...+..+...|+
T Consensus        90 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~  166 (172)
T PRK02603         90 KALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR  166 (172)
T ss_pred             HHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence            999999999999999999999999998886631             578888999999989887   4455555555554

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.35  E-value=1e-12  Score=108.82  Aligned_cols=154  Identities=14%  Similarity=0.085  Sum_probs=132.1

Q ss_pred             chhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCH
Q 029199            5 ALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNP   84 (197)
Q Consensus         5 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~   84 (197)
                      .|.-.+++.+|+.+-...++.++.+.+.++.+|+.+..                    .++.+.|+..|+++|+++|++.
T Consensus       178 cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy--------------------~~~~~ka~~hf~qal~ldpdh~  237 (486)
T KOG0550|consen  178 CLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYY--------------------NDNADKAINHFQQALRLDPDHQ  237 (486)
T ss_pred             hhhhcccchhHHHHHHHHHhcccchhHHHHhccccccc--------------------ccchHHHHHHHhhhhccChhhh
Confidence            34445555566666666667788888888888877766                    4899999999999999999984


Q ss_pred             ------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 029199           85 ------------LFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDG----EILSQYAKLVWELHNDQDRAATYYERAVH  148 (197)
Q Consensus        85 ------------~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~----~~~~~lg~~l~~~~~~~~~A~~~~~~al~  148 (197)
                                  ..|...|+-.++ .|++.+|.++|..+|.++|+|.    -.++|++.+...+|+ ..+|+.-++.++.
T Consensus       238 ~sk~~~~~~k~le~~k~~gN~~fk-~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgr-l~eaisdc~~Al~  315 (486)
T KOG0550|consen  238 KSKSASMMPKKLEVKKERGNDAFK-NGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGR-LREAISDCNEALK  315 (486)
T ss_pred             hHHhHhhhHHHHHHHHhhhhhHhh-ccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCC-chhhhhhhhhhhh
Confidence                        357778888888 9999999999999999999765    568899999999998 7999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          149 ASPEDSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       149 ~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      ++|....++...|.|+..++++++|+++|+.+
T Consensus       316 iD~syikall~ra~c~l~le~~e~AV~d~~~a  347 (486)
T KOG0550|consen  316 IDSSYIKALLRRANCHLALEKWEEAVEDYEKA  347 (486)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998885

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.34  E-value=2.3e-12  Score=104.34  Aligned_cols=173  Identities=9%  Similarity=0.014  Sum_probs=130.7

Q ss_pred             hhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCC--------CCCCCCC------CCcccCCCCCHHHHHH
Q 029199            6 LSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGG--------GTGGGGS------GFYPAGSGGDSQGVEE   71 (197)
Q Consensus         6 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~--------~~~~~~~------~~~~~~~~g~~~~A~~   71 (197)
                      |..-.+++.|+..+..+++..|.+..+.+...-.....+.++.        ....|.+      .+..+.+.++.+-|+.
T Consensus       266 Y~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~Alr  345 (478)
T KOG1129|consen  266 YQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALR  345 (478)
T ss_pred             HHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHH
Confidence            3334455555666666666666555554443333332222111        0112222      2335566799999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--C-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 029199           72 YYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILAD--P-GDGEILSQYAKLVWELHNDQDRAATYYERAVH  148 (197)
Q Consensus        72 ~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~--P-~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~  148 (197)
                      +|++.+++--.+++.+.|+|.+++. .++++-++.+|++|+..-  | .-.++|+|+|.+....| |+.-|..+|+-+|.
T Consensus       346 yYRRiLqmG~~speLf~NigLCC~y-aqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iG-D~nlA~rcfrlaL~  423 (478)
T KOG1129|consen  346 YYRRILQMGAQSPELFCNIGLCCLY-AQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIG-DFNLAKRCFRLALT  423 (478)
T ss_pred             HHHHHHHhcCCChHHHhhHHHHHHh-hcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEecc-chHHHHHHHHHHhc
Confidence            9999999999999999999977776 899999999999999874  3 34589999999999988 69999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          149 ASPEDSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       149 ~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      .||++.+++.|+|.+-.+.|+.++|...++..
T Consensus       424 ~d~~h~ealnNLavL~~r~G~i~~Arsll~~A  455 (478)
T KOG1129|consen  424 SDAQHGEALNNLAVLAARSGDILGARSLLNAA  455 (478)
T ss_pred             cCcchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence            99999999999999999999999998777764

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.34  E-value=5.8e-12  Score=79.74  Aligned_cols=64  Identities=28%  Similarity=0.507  Sum_probs=57.6

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 029199           89 NYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDS  154 (197)
Q Consensus        89 ~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~  154 (197)
                      .+|..++. .|++++|+.+|+++++.+|+++.+++.+|.++...|+ +++|+.+|+++++++|++|
T Consensus         2 ~~a~~~~~-~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~-~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    2 ALARALYQ-QGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGR-YDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHH-CTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHSTT-H
T ss_pred             hHHHHHHH-cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHCcCCC
Confidence            57777787 9999999999999999999999999999999999885 9999999999999999986

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.31  E-value=3.1e-11  Score=94.59  Aligned_cols=150  Identities=14%  Similarity=0.098  Sum_probs=128.4

Q ss_pred             HHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 029199            8 EEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFL   87 (197)
Q Consensus         8 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~   87 (197)
                      +-++.-.|-.+.+..-.+.|+++.+.--.|+-+..                    .|++++|+++|+..++-||.|..++
T Consensus        64 d~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa--------------------~~~~~~A~e~y~~lL~ddpt~~v~~  123 (289)
T KOG3060|consen   64 DTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEA--------------------TGNYKEAIEYYESLLEDDPTDTVIR  123 (289)
T ss_pred             HhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHH--------------------hhchhhHHHHHHHHhccCcchhHHH
Confidence            34556666677777677788888888888888777                    5999999999999999999999998


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 029199           88 SNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWET  167 (197)
Q Consensus        88 ~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  167 (197)
                      ...-.++.. +|+.-+|++.+..-++..|.|+++|..++.+|...+ +|++|.-||+..+-+.|.++..+..+|.+++-+
T Consensus       124 KRKlAilka-~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~-~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~  201 (289)
T KOG3060|consen  124 KRKLAILKA-QGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEG-DFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQ  201 (289)
T ss_pred             HHHHHHHHH-cCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHh-HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence            865546665 999999999999999999999999999999999988 599999999999999999999999999999988


Q ss_pred             CCccc---cccCCCc
Q 029199          168 EEDND---ECDAPSE  179 (197)
Q Consensus       168 g~~~e---a~~~~~~  179 (197)
                      |-.+.   +...|.+
T Consensus       202 gg~eN~~~arkyy~~  216 (289)
T KOG3060|consen  202 GGAENLELARKYYER  216 (289)
T ss_pred             hhHHHHHHHHHHHHH
Confidence            75332   4555555

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.31  E-value=7.9e-12  Score=104.88  Aligned_cols=110  Identities=10%  Similarity=0.006  Sum_probs=100.3

Q ss_pred             CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCC
Q 029199            3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPG   82 (197)
Q Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~   82 (197)
                      |..+-..+++.+|+..|..+++.+|+++..++.+|..+..+                    |++++|+..++++++++|+
T Consensus         9 a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~--------------------g~~~eAl~~~~~Al~l~P~   68 (356)
T PLN03088          9 AKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKL--------------------GNFTEAVADANKAIELDPS   68 (356)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--------------------CCHHHHHHHHHHHHHhCcC
Confidence            34455678899999999999999999999999999998774                    9999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 029199           83 NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELH  133 (197)
Q Consensus        83 ~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~  133 (197)
                      ++.+|+.+|.+++. .|++++|+..|+++++++|+++.+...++.+...+.
T Consensus        69 ~~~a~~~lg~~~~~-lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~  118 (356)
T PLN03088         69 LAKAYLRKGTACMK-LEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIA  118 (356)
T ss_pred             CHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            99999999988887 999999999999999999999999999988866654

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.30  E-value=1.1e-10  Score=87.73  Aligned_cols=103  Identities=21%  Similarity=0.252  Sum_probs=79.3

Q ss_pred             CCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-------HH
Q 029199           63 GGDSQGVEEYYKKMVEENPGN---PLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVW-------EL  132 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~P~~---~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~-------~~  132 (197)
                      .|++++|+..|++++.+.|+.   +.+|.++|.++.. .|++++|+.+|+++++++|.++..+.++|.++.       ..
T Consensus        48 ~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~-~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~  126 (168)
T CHL00033         48 EGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTS-NGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQ  126 (168)
T ss_pred             cCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHc
Confidence            489999999999999887763   4588999967666 999999999999999999999999999998888       54


Q ss_pred             cCCHH-------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc
Q 029199          133 HNDQD-------RAATYYERAVHASPEDSHVHASYAGFLWETEED  170 (197)
Q Consensus       133 ~~~~~-------~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  170 (197)
                      | +++       +|+.+|++++..+|++.   ...+..+..+|++
T Consensus       127 g-~~~~A~~~~~~a~~~~~~a~~~~p~~~---~~~~~~~~~~~~~  167 (168)
T CHL00033        127 G-DSEIAEAWFDQAAEYWKQAIALAPGNY---IEAQNWLKITGRF  167 (168)
T ss_pred             c-cHHHHHHHHHHHHHHHHHHHHhCcccH---HHHHHHHHHhcCC
Confidence            4 344       66777777888887654   3334444445554

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.29  E-value=1.1e-11  Score=113.35  Aligned_cols=179  Identities=11%  Similarity=-0.063  Sum_probs=134.3

Q ss_pred             CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCC------CCCCCCCCCc--------ccCCCCCHHH
Q 029199            3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGG------GTGGGGSGFY--------PAGSGGDSQG   68 (197)
Q Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~------~~~~~~~~~~--------~~~~~g~~~~   68 (197)
                      +++..+.|++..|+..|..+++.+|++++........+...|....      ....|.+...        .+...|++++
T Consensus        41 aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~  120 (822)
T PRK14574         41 LIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQ  120 (822)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHH
Confidence            4567788999999999999999999996332222222223343322      1224433321        3445699999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 029199           69 VEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVH  148 (197)
Q Consensus        69 A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~  148 (197)
                      |++.|+++++.+|+++.++..++.++.. .++.++|++.+++++..+|.+... ..++.++...++ ..+|++.|+++++
T Consensus       121 Aiely~kaL~~dP~n~~~l~gLa~~y~~-~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~-~~~AL~~~ekll~  197 (822)
T PRK14574        121 ALALWQSSLKKDPTNPDLISGMIMTQAD-AGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDR-NYDALQASSEAVR  197 (822)
T ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHhh-cCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcch-HHHHHHHHHHHHH
Confidence            9999999999999999999988766665 899999999999999999987665 445555555554 5579999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCCccccccCCCcccccc
Q 029199          149 ASPEDSHVHASYAGFLWETEEDNDECDAPSELDSNT  184 (197)
Q Consensus       149 ~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~~~~~  184 (197)
                      .+|++..++..+..++.+.|-..-|.+...+-|.+-
T Consensus       198 ~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f  233 (822)
T PRK14574        198 LAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLV  233 (822)
T ss_pred             hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcccc
Confidence            999999999999999999998888887777766433

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.28  E-value=1.2e-11  Score=82.47  Aligned_cols=81  Identities=27%  Similarity=0.444  Sum_probs=63.7

Q ss_pred             CCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 029199           63 GGDSQGVEEYYKKMVEENPG--NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAA  140 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~P~--~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~  140 (197)
                      .|+++.|+..|+++++.+|.  +..+++.+|.+++. .|++++|+..+++ ++.+|.++..++.+|.+++++|+ +++|+
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~-~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~-y~eAi   78 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQ-QGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGK-YEEAI   78 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHH-TTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT--HHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH-CCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCC-HHHHH
Confidence            37788888888888888884  45667778888887 8888888888888 77788888888888888888885 88888


Q ss_pred             HHHHHH
Q 029199          141 TYYERA  146 (197)
Q Consensus       141 ~~~~~a  146 (197)
                      ++|+++
T Consensus        79 ~~l~~~   84 (84)
T PF12895_consen   79 KALEKA   84 (84)
T ss_dssp             HHHHHH
T ss_pred             HHHhcC
Confidence            888765

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.28  E-value=2.5e-11  Score=79.71  Aligned_cols=91  Identities=21%  Similarity=0.356  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 029199           87 LSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWE  166 (197)
Q Consensus        87 ~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  166 (197)
                      ++++|.+++. .|++++|+..++++++..|+++.++..+|.++...++ +++|.++|++++...|.++.++..++.++..
T Consensus         3 ~~~~a~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (100)
T cd00189           3 LLNLGNLYYK-LGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGK-YEEALEDYEKALELDPDNAKAYYNLGLAYYK   80 (100)
T ss_pred             HHHHHHHHHH-HhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCcchhHHHHHHHHHHH
Confidence            4455545444 5666666666666666666666666666666655553 5666666666666666666666666666666


Q ss_pred             cCCccccccCCCc
Q 029199          167 TEEDNDECDAPSE  179 (197)
Q Consensus       167 ~g~~~ea~~~~~~  179 (197)
                      .|+++++...+.+
T Consensus        81 ~~~~~~a~~~~~~   93 (100)
T cd00189          81 LGKYEEALEAYEK   93 (100)
T ss_pred             HHhHHHHHHHHHH
Confidence            6666655544443

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.28  E-value=8.3e-11  Score=77.14  Aligned_cols=88  Identities=27%  Similarity=0.391  Sum_probs=82.7

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 029199           63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATY  142 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~  142 (197)
                      .|++++|+..++++++..|++..++..+|.++.. .+++++|+.+|++++...|.++.++..+|.++...++ +++|..+
T Consensus        13 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~   90 (100)
T cd00189          13 LGDYDEALEYYEKALELDPDNADAYYNLAAAYYK-LGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGK-YEEALEA   90 (100)
T ss_pred             HhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHh-HHHHHHH
Confidence            4899999999999999999999999999988877 8999999999999999999999999999999999885 9999999


Q ss_pred             HHHHHHhCCC
Q 029199          143 YERAVHASPE  152 (197)
Q Consensus       143 ~~~al~~~p~  152 (197)
                      +.++++.+|+
T Consensus        91 ~~~~~~~~~~  100 (100)
T cd00189          91 YEKALELDPN  100 (100)
T ss_pred             HHHHHccCCC
Confidence            9999998874

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.27  E-value=5.8e-11  Score=101.68  Aligned_cols=102  Identities=18%  Similarity=0.229  Sum_probs=89.1

Q ss_pred             CCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 029199           63 GGDSQGVEEYYKKMVEE-------NPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHND  135 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~-------~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~  135 (197)
                      .+.+.+|..+|+.++..       .+.....+.|||-++.+ .+++++|+.+|+++|.+.|.++.++..+|.++..+|+ 
T Consensus       427 ~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rk-l~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgn-  504 (611)
T KOG1173|consen  427 YEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRK-LNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGN-  504 (611)
T ss_pred             HhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHH-HhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcC-
Confidence            58999999999999832       22355679999977666 9999999999999999999999999999999999996 


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 029199          136 QDRAATYYERAVHASPEDSHVHASYAGFLWE  166 (197)
Q Consensus       136 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  166 (197)
                      ++.|+++|.++|.++|+|..+-.-|+.+...
T Consensus       505 ld~Aid~fhKaL~l~p~n~~~~~lL~~aie~  535 (611)
T KOG1173|consen  505 LDKAIDHFHKALALKPDNIFISELLKLAIED  535 (611)
T ss_pred             hHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence            9999999999999999998777777766554

>TIGR00540 hemY_coli hemY protein

Probab=99.27  E-value=3e-11  Score=103.14  Aligned_cols=114  Identities=11%  Similarity=0.021  Sum_probs=96.9

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHHcCCHHH
Q 029199           63 GGDSQGVEEYYKKMVEENPGNPLFL--SNYAQFLYQSKQDLPKAEEYYSRAILADPGDG--EILSQYAKLVWELHNDQDR  138 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~P~~~~~~--~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~--~~~~~lg~~l~~~~~~~~~  138 (197)
                      .|++++|.+.++++++..|++....  .-....... .++.+++++.++++++.+|+|+  .++..+|++++..|+ +++
T Consensus       276 ~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~-~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~-~~~  353 (409)
T TIGR00540       276 CDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLK-PEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGE-FIE  353 (409)
T ss_pred             CCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcC-CCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHccc-HHH
Confidence            4999999999999999999998631  112212233 5788999999999999999999  999999999999885 999


Q ss_pred             HHHHHH--HHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCc
Q 029199          139 AATYYE--RAVHASPEDSHVHASYAGFLWETEEDNDECDAPSE  179 (197)
Q Consensus       139 A~~~~~--~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~  179 (197)
                      |.++|+  ++++.+|++.. +..+|.++.++|+.++|.+.+++
T Consensus       354 A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~  395 (409)
T TIGR00540       354 AADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQD  395 (409)
T ss_pred             HHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHH
Confidence            999999  68888897655 66999999999999999888876

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.27  E-value=2.9e-11  Score=106.49  Aligned_cols=120  Identities=14%  Similarity=0.126  Sum_probs=110.0

Q ss_pred             ccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 029199           59 PAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDR  138 (197)
Q Consensus        59 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~  138 (197)
                      .+...++.++|.-|+.++-+++|-.+..|+..|.++.. .|++.+|.+.|.-|+.+||+++.....+|.++.+.|+ ..-
T Consensus       659 ~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~-~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~-~~l  736 (799)
T KOG4162|consen  659 LFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEV-KGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGS-PRL  736 (799)
T ss_pred             HHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHH-HHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC-cch
Confidence            33445888999999999999999999999999966665 9999999999999999999999999999999999885 566


Q ss_pred             HHH--HHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          139 AAT--YYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       139 A~~--~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      |..  .+..+++++|.|+++|+.+|.++..+|+.++|.+.|+..
T Consensus       737 a~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa  780 (799)
T KOG4162|consen  737 AEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAA  780 (799)
T ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence            777  999999999999999999999999999999999999884

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.27  E-value=5.4e-11  Score=106.27  Aligned_cols=116  Identities=23%  Similarity=0.345  Sum_probs=110.1

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 029199           63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATY  142 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~  142 (197)
                      .|++++|...+.++++++|.++.+|+.||.++-. .|+..++....-.|-.++|++.+.|..++....++|. +++|.-|
T Consensus       152 rg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEq-rGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~-i~qA~~c  229 (895)
T KOG2076|consen  152 RGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQ-RGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGN-INQARYC  229 (895)
T ss_pred             hCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH-cccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhccc-HHHHHHH
Confidence            4999999999999999999999999999966665 9999999999999999999999999999999888885 9999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          143 YERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       143 ~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      |.+|++.+|++....+..+.++.++|+...|.+.|.++
T Consensus       230 y~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l  267 (895)
T KOG2076|consen  230 YSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQL  267 (895)
T ss_pred             HHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence            99999999999999999999999999999998888875

>PRK11906 transcriptional regulator; Provisional

Probab=99.26  E-value=6.1e-11  Score=100.39  Aligned_cols=125  Identities=12%  Similarity=-0.003  Sum_probs=111.2

Q ss_pred             CCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHh--------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 029199           64 GDSQGVEEYYKKMV---EENPGNPLFLSNYAQFLYQS--------KQDLPKAEEYYSRAILADPGDGEILSQYAKLVWEL  132 (197)
Q Consensus        64 g~~~~A~~~~~~al---~~~P~~~~~~~~la~~l~~~--------~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~  132 (197)
                      -..+.|+.+|.+|+   .++|+++.+|..++.+++..        .....+|....++|++++|.|+.++..+|.++...
T Consensus       272 ~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~  351 (458)
T PRK11906        272 ESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLS  351 (458)
T ss_pred             HHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhh
Confidence            45688999999999   99999999999998766652        12567889999999999999999999999999998


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcccccccchhhhh
Q 029199          133 HNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSELDSNTLQIGHAA  191 (197)
Q Consensus       133 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~~~~~~~~~~~~  191 (197)
                      ++ ++.|...|++|+.++|+.+.+|+..|++....|+.++|.+.+++  .+.++|.+-.
T Consensus       352 ~~-~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~--alrLsP~~~~  407 (458)
T PRK11906        352 GQ-AKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDK--SLQLEPRRRK  407 (458)
T ss_pred             cc-hhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHH--HhccCchhhH
Confidence            86 99999999999999999999999999999999999999999998  6777786543

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.24  E-value=7.7e-11  Score=88.57  Aligned_cols=112  Identities=13%  Similarity=0.063  Sum_probs=92.9

Q ss_pred             CCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHH
Q 029199           64 GDSQGVEEYYKKMVEENPGN--PLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGD---GEILSQYAKLVWELHNDQDR  138 (197)
Q Consensus        64 g~~~~A~~~~~~al~~~P~~--~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~---~~~~~~lg~~l~~~~~~~~~  138 (197)
                      +++..+...+.+.++.++.+  ...|+++|.++.. .|++++|+..|++++.+.|+.   +.++.++|.++...|+ +++
T Consensus        13 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~-~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~-~~e   90 (168)
T CHL00033         13 KTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQS-EGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGE-HTK   90 (168)
T ss_pred             cccccchhhhhHhccCCchhHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCC-HHH
Confidence            44666677776666777776  5677899977776 999999999999999997763   4689999999999885 999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHH-------HcCCccccccCC
Q 029199          139 AATYYERAVHASPEDSHVHASYAGFLW-------ETEEDNDECDAP  177 (197)
Q Consensus       139 A~~~~~~al~~~p~~~~~~~~la~~~~-------~~g~~~ea~~~~  177 (197)
                      |+.+|+++++++|.+...+.++|.++.       .+|+++++...+
T Consensus        91 A~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~  136 (168)
T CHL00033         91 ALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWF  136 (168)
T ss_pred             HHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHH
Confidence            999999999999999999999999999       777777554333

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.24  E-value=8.4e-11  Score=82.33  Aligned_cols=95  Identities=11%  Similarity=0.050  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHH
Q 029199           84 PLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGD---GEILSQYAKLVWELHNDQDRAATYYERAVHASPED---SHVH  157 (197)
Q Consensus        84 ~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~---~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~---~~~~  157 (197)
                      +..++.+|..+.. .|++++|+..|+++++.+|++   +.+++.+|.+++..++ +++|+.+|++++..+|++   +.++
T Consensus         2 ~~~~~~~~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~p~~~~~~~~~   79 (119)
T TIGR02795         2 EEAYYDAALLVLK-AGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGK-YADAAKAFLAVVKKYPKSPKAPDAL   79 (119)
T ss_pred             cHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHHCCCCCcccHHH
Confidence            4578889988887 999999999999999999987   5789999999999885 999999999999999885   6789


Q ss_pred             HHHHHHHHHcCCccccccCCCcc
Q 029199          158 ASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       158 ~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      +.+|.++..+|++++|...+.++
T Consensus        80 ~~~~~~~~~~~~~~~A~~~~~~~  102 (119)
T TIGR02795        80 LKLGMSLQELGDKEKAKATLQQV  102 (119)
T ss_pred             HHHHHHHHHhCChHHHHHHHHHH
Confidence            99999999999999999888875

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.24  E-value=4e-12  Score=102.94  Aligned_cols=124  Identities=15%  Similarity=0.109  Sum_probs=107.1

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 029199           63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATY  142 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~  142 (197)
                      ++++++|+++|+.+++++|.+.++....|.-++. .++.+-|+.+|++.|+.--.+|+..+|+|.|++-.+ ++|-++.+
T Consensus       303 m~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY-~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaq-Q~D~~L~s  380 (478)
T KOG1129|consen  303 MEQQEDALQLYKLVLKLHPINVEAIACIAVGYFY-DNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQ-QIDLVLPS  380 (478)
T ss_pred             HHhHHHHHHHHHHHHhcCCccceeeeeeeecccc-CCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhc-chhhhHHH
Confidence            5899999999999999999999998888866666 899999999999999999999999999999988866 59999999


Q ss_pred             HHHHHHhC--C-CCHHHHHHHHHHHHHcCCccccccCCCcccccccchhhh
Q 029199          143 YERAVHAS--P-EDSHVHASYAGFLWETEEDNDECDAPSELDSNTLQIGHA  190 (197)
Q Consensus       143 ~~~al~~~--p-~~~~~~~~la~~~~~~g~~~ea~~~~~~~~~~~~~~~~~  190 (197)
                      |++|+..-  | .-.++|||+|.+....|++.-|.+.|+-  .+..++-|+
T Consensus       381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrl--aL~~d~~h~  429 (478)
T KOG1129|consen  381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRL--ALTSDAQHG  429 (478)
T ss_pred             HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHH--HhccCcchH
Confidence            99999774  3 3568999999999999999999888876  333344343

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.22  E-value=3.8e-11  Score=102.21  Aligned_cols=115  Identities=18%  Similarity=0.160  Sum_probs=106.5

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 029199           63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATY  142 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~  142 (197)
                      ....+++++..+...-++|.-..--..-|+.++. .|+|..|+..|.+|+..+|+|+..+.|+|.+|..++. +..|+..
T Consensus       337 lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk-~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~-~~~aL~D  414 (539)
T KOG0548|consen  337 LKEAEKALKEAERKAYINPEKAEEEREKGNEAFK-KGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGE-YPEALKD  414 (539)
T ss_pred             HHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhh-HHHHHHH
Confidence            3667777777777778889888888888989898 9999999999999999999999999999999999996 9999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCc
Q 029199          143 YERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSE  179 (197)
Q Consensus       143 ~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~  179 (197)
                      .+++++++|++...|..-|.++..+.+|++|.+.|+.
T Consensus       415 a~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~e  451 (539)
T KOG0548|consen  415 AKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQE  451 (539)
T ss_pred             HHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999988887

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.22  E-value=1.6e-10  Score=92.71  Aligned_cols=122  Identities=20%  Similarity=0.168  Sum_probs=104.8

Q ss_pred             HHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 029199           12 VMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYA   91 (197)
Q Consensus        12 ~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la   91 (197)
                      +.+-+..+.-.+..+|+|++-|.-.|-..-.                    .|++..|...|.+++++.|++++++..+|
T Consensus       138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~--------------------~~~~~~A~~AY~~A~rL~g~n~~~~~g~a  197 (287)
T COG4235         138 MEALIARLETHLQQNPGDAEGWDLLGRAYMA--------------------LGRASDALLAYRNALRLAGDNPEILLGLA  197 (287)
T ss_pred             HHHHHHHHHHHHHhCCCCchhHHHHHHHHHH--------------------hcchhHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            4444555555667799999988887776555                    49999999999999999999999999999


Q ss_pred             HHHHHhcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 029199           92 QFLYQSKQ--DLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDS  154 (197)
Q Consensus        92 ~~l~~~~g--~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~  154 (197)
                      .+++...|  ...++...+++++++||.|+.+.+.+|..+++.| ++++|...++..++..|.+.
T Consensus       198 eaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g-~~~~A~~~Wq~lL~~lp~~~  261 (287)
T COG4235         198 EALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQG-DYAEAAAAWQMLLDLLPADD  261 (287)
T ss_pred             HHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcc-cHHHHHHHHHHHHhcCCCCC
Confidence            88887454  5688999999999999999999999999999988 59999999999999987654

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.21  E-value=3e-11  Score=77.30  Aligned_cols=67  Identities=25%  Similarity=0.314  Sum_probs=60.5

Q ss_pred             ChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC-CHHHHHHH
Q 029199           29 GQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQ-DLPKAEEY  107 (197)
Q Consensus        29 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g-~~~~A~~~  107 (197)
                      ++..|...|..+-.                    .|++++|+.+|+++++++|+++.+|+++|.++.. +| ++.+|+..
T Consensus         2 ~a~~~~~~g~~~~~--------------------~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~-~~~~~~~A~~~   60 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQ--------------------QGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMK-LGKDYEEAIED   60 (69)
T ss_dssp             SHHHHHHHHHHHHH--------------------TTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHH-TTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-hCccHHHHHHH
Confidence            56777777777665                    4999999999999999999999999999988777 88 79999999


Q ss_pred             HHHHHHhCC
Q 029199          108 YSRAILADP  116 (197)
Q Consensus       108 ~~~al~l~P  116 (197)
                      |+++++++|
T Consensus        61 ~~~al~l~P   69 (69)
T PF13414_consen   61 FEKALKLDP   69 (69)
T ss_dssp             HHHHHHHST
T ss_pred             HHHHHHcCc
Confidence            999999998

...

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.21  E-value=6.4e-11  Score=106.54  Aligned_cols=140  Identities=16%  Similarity=0.129  Sum_probs=126.8

Q ss_pred             HHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 029199            8 EEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFL   87 (197)
Q Consensus         8 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~   87 (197)
                      +-.....|+..|++++..+|.+.-+-...|+.+..+                    |++.+|...|.++.+--.+++.+|
T Consensus       624 ~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~k--------------------g~~~~A~dIFsqVrEa~~~~~dv~  683 (1018)
T KOG2002|consen  624 EKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEK--------------------GRFSEARDIFSQVREATSDFEDVW  683 (1018)
T ss_pred             HHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhc--------------------cCchHHHHHHHHHHHHHhhCCcee
Confidence            456788999999999999999987777777777774                    999999999999988877899999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 029199           88 SNYAQFLYQSKQDLPKAEEYYSRAILAD--PGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLW  165 (197)
Q Consensus        88 ~~la~~l~~~~g~~~~A~~~~~~al~l~--P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  165 (197)
                      .|+|.++.. +|+|..|++.|+.+++..  .+++.++..+|.++++.++ +.+|.+++.+|+...|.|+.+.+|+|.++.
T Consensus       684 lNlah~~~e-~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~-~~eak~~ll~a~~~~p~~~~v~FN~a~v~k  761 (1018)
T KOG2002|consen  684 LNLAHCYVE-QGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGK-LQEAKEALLKARHLAPSNTSVKFNLALVLK  761 (1018)
T ss_pred             eeHHHHHHH-HHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHhCCccchHHhHHHHHHH
Confidence            999999998 999999999999999864  4789999999999999896 999999999999999999999999999988


Q ss_pred             HcCC
Q 029199          166 ETEE  169 (197)
Q Consensus       166 ~~g~  169 (197)
                      ++..
T Consensus       762 kla~  765 (1018)
T KOG2002|consen  762 KLAE  765 (1018)
T ss_pred             HHHH
Confidence            7753

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.21  E-value=3.5e-11  Score=100.15  Aligned_cols=116  Identities=16%  Similarity=0.065  Sum_probs=96.4

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 029199           63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQ---SKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRA  139 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~---~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A  139 (197)
                      .|++++|.+.++++++.+|++..++.. +..++.   ..++...+.+.++.....+|....++..+|.++...|+ +++|
T Consensus        56 ~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~-~~~A  133 (355)
T cd05804          56 AGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQ-YDRA  133 (355)
T ss_pred             cCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCC-HHHH
Confidence            599999999999999999999988774 323332   13455555555555446778888898999999999885 9999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          140 ATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       140 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      +..++++++++|+++.++..+|.++.+.|++++|+..+++.
T Consensus       134 ~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~  174 (355)
T cd05804         134 EEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESW  174 (355)
T ss_pred             HHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence            99999999999999999999999999999999998888774

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.19  E-value=2.9e-10  Score=95.78  Aligned_cols=127  Identities=18%  Similarity=0.167  Sum_probs=110.5

Q ss_pred             CCcccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 029199           56 GFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHND  135 (197)
Q Consensus        56 ~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~  135 (197)
                      .+......|++++|...|++++.-+....++++|.|.. +..+|+.++|+++|-+.-.+--++.++++.++.+|-.+. +
T Consensus       496 kgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt-~e~~~~ldeald~f~klh~il~nn~evl~qianiye~le-d  573 (840)
T KOG2003|consen  496 KGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLT-AEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLE-D  573 (840)
T ss_pred             CCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhccc-HHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh-C
Confidence            34444456999999999999999999999999999944 445999999999999988888899999999999988887 5


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccc----cCCCcccccc
Q 029199          136 QDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDEC----DAPSELDSNT  184 (197)
Q Consensus       136 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~----~~~~~~~~~~  184 (197)
                      ..+|+++|.++..+-|++|.++..+|.+|.+.|+-.+|.    +.|+-+|+..
T Consensus       574 ~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~ni  626 (840)
T KOG2003|consen  574 PAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNI  626 (840)
T ss_pred             HHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcch
Confidence            899999999999999999999999999999999988883    4455555444

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.19  E-value=3.3e-10  Score=103.76  Aligned_cols=116  Identities=13%  Similarity=0.113  Sum_probs=96.6

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 029199           63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATY  142 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~  142 (197)
                      .|+++.|+..|+++++.+|+++.....+..++.. .|+.++|+.++++++.-+|.+......+|.++...| ++++|++.
T Consensus        47 ~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~-~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~g-dyd~Aiel  124 (822)
T PRK14574         47 AGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGW-AGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEK-RWDQALAL  124 (822)
T ss_pred             CCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHH-cCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcC-CHHHHHHH
Confidence            5999999999999999999996544477756666 899999999999999444444555555577888867 59999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          143 YERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       143 ~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      |+++++.+|+++.++..++.++.+.++.++|...++++
T Consensus       125 y~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l  162 (822)
T PRK14574        125 WQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATEL  162 (822)
T ss_pred             HHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHh
Confidence            99999999999999999999999999999998887775

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.18  E-value=1.9e-11  Score=107.23  Aligned_cols=153  Identities=14%  Similarity=0.061  Sum_probs=128.3

Q ss_pred             CCCChhhHHhhhcccCCCCCCCC-C--C-----CCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 029199           26 GTVGQEMYLAKGLGVGGRGGRGG-G--T-----GGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQS   97 (197)
Q Consensus        26 ~p~~~~~~~~~g~~~~~~~~~~~-~--~-----~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~   97 (197)
                      .|++|-+|+..|-.+..-.-++. +  +     ...-..+......+++.++.++++..++++|-....|+++|.+..+ 
T Consensus       453 k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALq-  531 (777)
T KOG1128|consen  453 KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQ-  531 (777)
T ss_pred             CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHH-
Confidence            78899999998876543211111 0  0     0001112223446999999999999999999999999999977776 


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCC
Q 029199           98 KQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAP  177 (197)
Q Consensus        98 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~  177 (197)
                      .++++.|..+|.+++.++|++.++|+|++..|..++. ..+|...+..|++.+-.++.+|-|+-.+..+.|.+++|...+
T Consensus       532 lek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~-k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~  610 (777)
T KOG1128|consen  532 LEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKK-KKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAY  610 (777)
T ss_pred             HhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhh-hHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHH
Confidence            9999999999999999999999999999999999996 799999999999999999999999999999999999999888


Q ss_pred             Ccc
Q 029199          178 SEL  180 (197)
Q Consensus       178 ~~~  180 (197)
                      +++
T Consensus       611 ~rl  613 (777)
T KOG1128|consen  611 HRL  613 (777)
T ss_pred             HHH
Confidence            886

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.18  E-value=1.3e-11  Score=82.28  Aligned_cols=80  Identities=16%  Similarity=0.297  Sum_probs=71.3

Q ss_pred             cCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcccccc
Q 029199           98 KQDLPKAEEYYSRAILADPG--DGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECD  175 (197)
Q Consensus        98 ~g~~~~A~~~~~~al~l~P~--~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~  175 (197)
                      +|+++.|+..|+++++.+|.  +..+++.+|.++++.|+ +++|+..+++ +..+|.++..++.+|.|+.++|++++|+.
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~-y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGK-YEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTH-HHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCC-HHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            68999999999999999995  57788889999999885 9999999999 88899999999999999999999999988


Q ss_pred             CCCc
Q 029199          176 APSE  179 (197)
Q Consensus       176 ~~~~  179 (197)
                      .+++
T Consensus        80 ~l~~   83 (84)
T PF12895_consen   80 ALEK   83 (84)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            7653

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.18  E-value=1.5e-10  Score=100.42  Aligned_cols=151  Identities=14%  Similarity=0.094  Sum_probs=133.7

Q ss_pred             HHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 029199            8 EEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFL   87 (197)
Q Consensus         8 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~   87 (197)
                      |.+++..-+.-.+..++..|..++.+..+|+.+..+                    |+.++|..+...+++.|+.+...|
T Consensus        19 E~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~l--------------------g~~~ea~~~vr~glr~d~~S~vCw   78 (700)
T KOG1156|consen   19 ETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCL--------------------GKKEEAYELVRLGLRNDLKSHVCW   78 (700)
T ss_pred             HHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcc--------------------cchHHHHHHHHHHhccCcccchhH
Confidence            345556666666666778999999999999998874                    999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 029199           88 SNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWET  167 (197)
Q Consensus        88 ~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  167 (197)
                      .-+| ++++...+|++|+.||+.|+.++|+|..+|..++.+-.+++ +++-..+.-.+.++..|.+-..|..++..+...
T Consensus        79 Hv~g-l~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmR-d~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~  156 (700)
T KOG1156|consen   79 HVLG-LLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMR-DYEGYLETRNQLLQLRPSQRASWIGFAVAQHLL  156 (700)
T ss_pred             HHHH-HHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence            9999 55555899999999999999999999999999998888888 699999999999999999999999999999999


Q ss_pred             CCccccccCCCcc
Q 029199          168 EEDNDECDAPSEL  180 (197)
Q Consensus       168 g~~~ea~~~~~~~  180 (197)
                      |++..|....+++
T Consensus       157 g~y~~A~~il~ef  169 (700)
T KOG1156|consen  157 GEYKMALEILEEF  169 (700)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999997666654

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=99.17  E-value=5.8e-10  Score=94.22  Aligned_cols=119  Identities=17%  Similarity=0.133  Sum_probs=106.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 029199           61 GSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAA  140 (197)
Q Consensus        61 ~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~  140 (197)
                      ...++++.|+..|++..+.+|+   +...++.++.. .++..+|++.+.++++.+|.+...+...+.++...++ ++.|+
T Consensus       180 ~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~-~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~-~~lAL  254 (395)
T PF09295_consen  180 SLTQRYDEAIELLEKLRERDPE---VAVLLARVYLL-MNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKK-YELAL  254 (395)
T ss_pred             hhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHh-cCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC-HHHHH
Confidence            4458999999999999999986   45557877777 8999999999999999999999999999999999775 89999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcccccc
Q 029199          141 TYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSELDSNT  184 (197)
Q Consensus       141 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~~~~~  184 (197)
                      .+.++++.+.|++...|+.|+.+|..+|++++|...+-.+|-++
T Consensus       255 ~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~  298 (395)
T PF09295_consen  255 EIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT  298 (395)
T ss_pred             HHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence            99999999999999999999999999999999987776666444

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.16  E-value=6.4e-11  Score=104.36  Aligned_cols=120  Identities=18%  Similarity=0.194  Sum_probs=104.6

Q ss_pred             HHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 029199           14 EALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQF   93 (197)
Q Consensus        14 ~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~   93 (197)
                      ++--++..+-..+|.++..|+.+|.....                    .|++++|.+.|..++.+||+++.....+|.+
T Consensus       668 ~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~--------------------~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~  727 (799)
T KOG4162|consen  668 EARSCLLEASKIDPLSASVYYLRGLLLEV--------------------KGQLEEAKEAFLVALALDPDHVPSMTALAEL  727 (799)
T ss_pred             HHHHHHHHHHhcchhhHHHHHHhhHHHHH--------------------HHhhHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence            34334444455678888888888888766                    4999999999999999999999999999988


Q ss_pred             HHHhcCCHHHHHH--HHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 029199           94 LYQSKQDLPKAEE--YYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSH  155 (197)
Q Consensus        94 l~~~~g~~~~A~~--~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~  155 (197)
                      +.. .|+..-|..  .+..++++||.|+++|+.+|.++.+.| |.++|.+||..|+++.+++|.
T Consensus       728 lle-~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~G-d~~~Aaecf~aa~qLe~S~PV  789 (799)
T KOG4162|consen  728 LLE-LGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLG-DSKQAAECFQAALQLEESNPV  789 (799)
T ss_pred             HHH-hCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc-chHHHHHHHHHHHhhccCCCc
Confidence            887 998888877  999999999999999999999999877 699999999999999998874

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=99.16  E-value=7.5e-10  Score=81.30  Aligned_cols=114  Identities=13%  Similarity=0.184  Sum_probs=99.5

Q ss_pred             CCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCH
Q 029199           63 GGDSQGVEEYYKKMVEENPGN---PLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGD---GEILSQYAKLVWELHNDQ  136 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~P~~---~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~---~~~~~~lg~~l~~~~~~~  136 (197)
                      .++...+.+.+++.++.+|+.   ..+.+.+|.+++. .|++++|+..|++++...|+.   +.+.+.++.++...++ +
T Consensus        24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~-~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~-~  101 (145)
T PF09976_consen   24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYE-QGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQ-Y  101 (145)
T ss_pred             CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCC-H
Confidence            488899999999999999999   5677789988888 999999999999999988766   4688899999999885 9


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCc
Q 029199          137 DRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSE  179 (197)
Q Consensus       137 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~  179 (197)
                      ++|+..++. +...+-.+.++..+|.++...|++++|...|+.
T Consensus       102 d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~  143 (145)
T PF09976_consen  102 DEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQK  143 (145)
T ss_pred             HHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            999999977 344566778899999999999999999988764

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.16  E-value=3.6e-10  Score=93.82  Aligned_cols=114  Identities=15%  Similarity=0.144  Sum_probs=100.1

Q ss_pred             cccCCCCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 029199           58 YPAGSGGDSQGVEEYYKKMVEENPGN---------------PLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEIL  122 (197)
Q Consensus        58 ~~~~~~g~~~~A~~~~~~al~~~P~~---------------~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~  122 (197)
                      ..+.+.|+|..|...|++++..-+..               ..++.|++.++.+ ++++.+|+..+.++|.++|+|.-++
T Consensus       216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lK-l~~~~~Ai~~c~kvLe~~~~N~KAL  294 (397)
T KOG0543|consen  216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLK-LKEYKEAIESCNKVLELDPNNVKAL  294 (397)
T ss_pred             hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHh-hhhHHHHHHHHHHHHhcCCCchhHH
Confidence            35667799999999999998764321               3468899978777 9999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcccc
Q 029199          123 SQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDE  173 (197)
Q Consensus       123 ~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea  173 (197)
                      +..|.++..++ +++.|+..|+++++++|+|-.+...+..|..+..++.+.
T Consensus       295 yRrG~A~l~~~-e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~k  344 (397)
T KOG0543|consen  295 YRRGQALLALG-EYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEK  344 (397)
T ss_pred             HHHHHHHHhhc-cHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHH
Confidence            99999999988 599999999999999999999999999888887766664

>PRK15331 chaperone protein SicA; Provisional

Probab=99.15  E-value=5.3e-10  Score=82.86  Aligned_cols=103  Identities=17%  Similarity=0.136  Sum_probs=88.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 029199           61 GSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAA  140 (197)
Q Consensus        61 ~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~  140 (197)
                      ...|++++|...|+-+...+|.++..|..||.++.. ++++++|+..|..+..++++||...+..|.|+..+++ .++|+
T Consensus        48 y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~-~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~-~~~A~  125 (165)
T PRK15331         48 YNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQL-KKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRK-AAKAR  125 (165)
T ss_pred             HHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCC-HHHHH
Confidence            446999999999999999999999999999977776 9999999999999999999999999999999999885 89999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHH
Q 029199          141 TYYERAVHASPEDSHVHASYAGFLWE  166 (197)
Q Consensus       141 ~~~~~al~~~p~~~~~~~~la~~~~~  166 (197)
                      .+|+.++. .|.+..+.-.-...+..
T Consensus       126 ~~f~~a~~-~~~~~~l~~~A~~~L~~  150 (165)
T PRK15331        126 QCFELVNE-RTEDESLRAKALVYLEA  150 (165)
T ss_pred             HHHHHHHh-CcchHHHHHHHHHHHHH
Confidence            99999988 57766655444444443

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=99.15  E-value=1.7e-10  Score=73.46  Aligned_cols=64  Identities=20%  Similarity=0.261  Sum_probs=44.7

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 029199           98 KQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAG  162 (197)
Q Consensus        98 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  162 (197)
                      .|++++|+..|+++++.+|+++.+++.+|.+++..|+ +++|.+.+++++..+|+++.++.-++.
T Consensus         4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~-~~~A~~~l~~~~~~~~~~~~~~~l~a~   67 (68)
T PF14559_consen    4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQ-YDEAEELLERLLKQDPDNPEYQQLLAQ   67 (68)
T ss_dssp             TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT--HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence            5677777777777777777777777777777777663 777777777777777776666655554

...

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.14  E-value=8e-11  Score=97.74  Aligned_cols=180  Identities=15%  Similarity=0.073  Sum_probs=142.4

Q ss_pred             CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCC--------CCCCCCCCCc----------------
Q 029199            3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGG--------GTGGGGSGFY----------------   58 (197)
Q Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~--------~~~~~~~~~~----------------   58 (197)
                      |+.+-..-++-+||..++++++..|++++.|..+...+..+|.+..        ....|+....                
T Consensus        56 gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~  135 (486)
T KOG0550|consen   56 GNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIE  135 (486)
T ss_pred             cchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHH
Confidence            5666777889999999999999999999999888887766665322        1111111100                


Q ss_pred             ------------------------------------------ccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 029199           59 ------------------------------------------PAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQ   96 (197)
Q Consensus        59 ------------------------------------------~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~   96 (197)
                                                                -+...|++++|.+.--..+++++.+..+++..|.+++.
T Consensus       136 A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy  215 (486)
T KOG0550|consen  136 AEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYY  215 (486)
T ss_pred             HHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhccccccc
Confidence                                                      11224888888888888999999999999999988887


Q ss_pred             hcCCHHHHHHHHHHHHHhCCCCHH------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHH
Q 029199           97 SKQDLPKAEEYYSRAILADPGDGE------------ILSQYAKLVWELHNDQDRAATYYERAVHASPEDS----HVHASY  160 (197)
Q Consensus        97 ~~g~~~~A~~~~~~al~l~P~~~~------------~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~l  160 (197)
                       ..+.++|+.+|+++|.++|+...            .|-..|.-.++.|+ +.+|.++|..+|.++|+|.    ..|.|+
T Consensus       216 -~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~-y~~A~E~Yteal~idP~n~~~naklY~nr  293 (486)
T KOG0550|consen  216 -NDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGN-YRKAYECYTEALNIDPSNKKTNAKLYGNR  293 (486)
T ss_pred             -ccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccc-hhHHHHHHHHhhcCCccccchhHHHHHHh
Confidence             99999999999999999998764            45666777888775 9999999999999999854    568999


Q ss_pred             HHHHHHcCCccccccCCCcccccc
Q 029199          161 AGFLWETEEDNDECDAPSELDSNT  184 (197)
Q Consensus       161 a~~~~~~g~~~ea~~~~~~~~~~~  184 (197)
                      +.+..++|+..+|+.+-...-.|.
T Consensus       294 a~v~~rLgrl~eaisdc~~Al~iD  317 (486)
T KOG0550|consen  294 ALVNIRLGRLREAISDCNEALKID  317 (486)
T ss_pred             HhhhcccCCchhhhhhhhhhhhcC
Confidence            999999999999976655543333

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.13  E-value=4.5e-10  Score=84.77  Aligned_cols=98  Identities=16%  Similarity=0.185  Sum_probs=82.5

Q ss_pred             HHHHHHHhCC--CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 029199           72 YYKKMVEENP--GNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGD---GEILSQYAKLVWELHNDQDRAATYYERA  146 (197)
Q Consensus        72 ~~~~al~~~P--~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~---~~~~~~lg~~l~~~~~~~~~A~~~~~~a  146 (197)
                      .+...+.+++  ....+++++|..+.. .|++++|+.+|++++++.|+.   +.++.++|.++...|+ +++|+.+|+++
T Consensus        21 ~~~~~~~~~~~~~~a~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~a   98 (172)
T PRK02603         21 LILKILPINKKAKEAFVYYRDGMSAQA-DGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGE-HDKALEYYHQA   98 (172)
T ss_pred             HHHHHcccccHhhhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCC-HHHHHHHHHHH
Confidence            3444444443  456678899977776 999999999999999987764   4799999999999885 99999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHHcCCcc
Q 029199          147 VHASPEDSHVHASYAGFLWETEEDN  171 (197)
Q Consensus       147 l~~~p~~~~~~~~la~~~~~~g~~~  171 (197)
                      ++..|+++..+..+|.++..+|+..
T Consensus        99 l~~~p~~~~~~~~lg~~~~~~g~~~  123 (172)
T PRK02603         99 LELNPKQPSALNNIAVIYHKRGEKA  123 (172)
T ss_pred             HHhCcccHHHHHHHHHHHHHcCChH
Confidence            9999999999999999999998843

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.13  E-value=1.5e-10  Score=73.23  Aligned_cols=56  Identities=27%  Similarity=0.469  Sum_probs=52.2

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 029199           63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDG  119 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~  119 (197)
                      .|++++|++.|+++++.+|+++.+|+.+|.+++. +|++++|+..|+++++++|+||
T Consensus        10 ~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~-~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen   10 QGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQ-QGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             CTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHSTT-H
T ss_pred             cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCcCCC
Confidence            5999999999999999999999999999988887 9999999999999999999987

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.13  E-value=5.6e-10  Score=95.05  Aligned_cols=130  Identities=9%  Similarity=0.059  Sum_probs=111.9

Q ss_pred             ccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHH
Q 029199           24 ERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPK  103 (197)
Q Consensus        24 ~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~  103 (197)
                      +..|+++++++..+..+..+                    |+.++|.+.++++++. |.++.....++.+  . .++.++
T Consensus       257 ~~~~~~~~~~~~~A~~l~~~--------------------g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~-~~~~~~  312 (398)
T PRK10747        257 RKTRHQVALQVAMAEHLIEC--------------------DDHDTAQQIILDGLKR-QYDERLVLLIPRL--K-TNNPEQ  312 (398)
T ss_pred             HHHhCCHHHHHHHHHHHHHC--------------------CCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--c-CCChHH
Confidence            35677888888888777764                    9999999999999995 5566655555532  3 589999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCc
Q 029199          104 AEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSE  179 (197)
Q Consensus       104 A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~  179 (197)
                      +++.+++.++.+|+|+..+..+|.++...+ ++++|.++|+++++..|++. .+..++.++.++|+.++|.+.+++
T Consensus       313 al~~~e~~lk~~P~~~~l~l~lgrl~~~~~-~~~~A~~~le~al~~~P~~~-~~~~La~~~~~~g~~~~A~~~~~~  386 (398)
T PRK10747        313 LEKVLRQQIKQHGDTPLLWSTLGQLLMKHG-EWQEASLAFRAALKQRPDAY-DYAWLADALDRLHKPEEAAAMRRD  386 (398)
T ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHH
Confidence            999999999999999999999999999977 59999999999999999854 567899999999999999888887

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=99.13  E-value=4e-10  Score=98.67  Aligned_cols=114  Identities=10%  Similarity=-0.041  Sum_probs=96.9

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc-------CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHcC
Q 029199           64 GDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSK-------QDLPKAEEYYSRAILA--DPGDGEILSQYAKLVWELHN  134 (197)
Q Consensus        64 g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~-------g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~l~~~~~  134 (197)
                      +++..|+.+|+++++++|+++.+|..++.++....       .+..++.+..++++.+  +|.++.++.-+|......| 
T Consensus       356 ~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g-  434 (517)
T PRK10153        356 KSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKG-  434 (517)
T ss_pred             HHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcC-
Confidence            56889999999999999999999998885544311       1345677777787764  8889999999998877756 


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCc
Q 029199          135 DQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSE  179 (197)
Q Consensus       135 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~  179 (197)
                      ++++|...+++|+.++| +..+|..+|.++...|+.++|.+.+++
T Consensus       435 ~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~  478 (517)
T PRK10153        435 KTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYST  478 (517)
T ss_pred             CHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            59999999999999999 588999999999999999999999988

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=99.12  E-value=6.4e-10  Score=71.76  Aligned_cols=69  Identities=33%  Similarity=0.408  Sum_probs=55.3

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 029199           92 QFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAG  162 (197)
Q Consensus        92 ~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  162 (197)
                      .++.. .+++++|++++++++.++|+++..+..+|.+++.+|+ +++|.+.|+++++..|+++.+....+.
T Consensus         3 ~~~~~-~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~-~~~A~~~l~~~l~~~p~~~~~~~~~a~   71 (73)
T PF13371_consen    3 QIYLQ-QEDYEEALEVLERALELDPDDPELWLQRARCLFQLGR-YEEALEDLERALELSPDDPDARALRAM   71 (73)
T ss_pred             HHHHh-CCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhcc-HHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence            34555 7888888888888888888888888888888888885 888888888888888888877655543

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=99.12  E-value=1.3e-09  Score=81.66  Aligned_cols=97  Identities=16%  Similarity=0.187  Sum_probs=77.7

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-
Q 029199           66 SQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQ----------DLPKAEEYYSRAILADPGDGEILSQYAKLVWELHN-  134 (197)
Q Consensus        66 ~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g----------~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~-  134 (197)
                      ++.|.+.++.....||.+++.+++.|..+.. +.          .+++|+.-|++||.++|+...+++++|.+|...+. 
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLE-LAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l   85 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLE-LAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL   85 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHH-HHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHH-HHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence            5789999999999999999999999977776 43          45678899999999999999999999999876553 


Q ss_pred             ---------CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 029199          135 ---------DQDRAATYYERAVHASPEDSHVHASYAGF  163 (197)
Q Consensus       135 ---------~~~~A~~~~~~al~~~p~~~~~~~~la~~  163 (197)
                               .|++|.++|++|+..+|+|...+..+-.+
T Consensus        86 ~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~  123 (186)
T PF06552_consen   86 TPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA  123 (186)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred             cCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence                     37899999999999999999877766655

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.11  E-value=2.1e-10  Score=96.63  Aligned_cols=177  Identities=15%  Similarity=0.065  Sum_probs=103.7

Q ss_pred             CCcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCC--------CCCCCCCC------cccCCCCCHH
Q 029199            2 AGTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGG--------TGGGGSGF------YPAGSGGDSQ   67 (197)
Q Consensus         2 ~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~--------~~~~~~~~------~~~~~~g~~~   67 (197)
                      +|++.=--|.+..|...|..++.-+....+.++..|+....+|..++.        +.--.+..      ..+....+..
T Consensus       496 kgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~a  575 (840)
T KOG2003|consen  496 KGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPA  575 (840)
T ss_pred             CCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHH
Confidence            455554556677777777776666777788888888888775321110        00000000      0111223444


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 029199           68 GVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAV  147 (197)
Q Consensus        68 ~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al  147 (197)
                      +|++.|.++..+-|++|.++..||.++-. .|+-.+|.+|+-...+..|.|.+..-.+|..|...+ .+++|+.+|+++-
T Consensus       576 qaie~~~q~~slip~dp~ilskl~dlydq-egdksqafq~~ydsyryfp~nie~iewl~ayyidtq-f~ekai~y~ekaa  653 (840)
T KOG2003|consen  576 QAIELLMQANSLIPNDPAILSKLADLYDQ-EGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQ-FSEKAINYFEKAA  653 (840)
T ss_pred             HHHHHHHHhcccCCCCHHHHHHHHHHhhc-ccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhH-HHHHHHHHHHHHH
Confidence            44444444444444444444444433222 444444444444444444444444444554455545 5788888899988


Q ss_pred             HhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          148 HASPEDSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       148 ~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      -+.|+........+.|+.+.|+|++|.+.|..+
T Consensus       654 liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~  686 (840)
T KOG2003|consen  654 LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDI  686 (840)
T ss_pred             hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence            888888888888899999999999987777654

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.11  E-value=4.2e-10  Score=100.65  Aligned_cols=152  Identities=18%  Similarity=0.155  Sum_probs=129.6

Q ss_pred             hhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHH
Q 029199            6 LSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPL   85 (197)
Q Consensus         6 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~   85 (197)
                      +=.-|+.++|...+-..+..+|..++.|...|.....                    .|+.+++..+.-.|..++|++.+
T Consensus       149 lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEq--------------------rGd~eK~l~~~llAAHL~p~d~e  208 (895)
T KOG2076|consen  149 LFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQ--------------------RGDIEKALNFWLLAAHLNPKDYE  208 (895)
T ss_pred             HHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH--------------------cccHHHHHHHHHHHHhcCCCChH
Confidence            3345888999999999999999999999999999887                    49999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHH
Q 029199           86 FLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPED-----SHVHASY  160 (197)
Q Consensus        86 ~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~l  160 (197)
                      .|..++..... +|++++|+-||.+|++.+|.+-...+.++.+|.++| +...|.+.|.+++..+|..     -......
T Consensus       209 ~W~~ladls~~-~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G-~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~  286 (895)
T KOG2076|consen  209 LWKRLADLSEQ-LGNINQARYCYSRAIQANPSNWELIYERSSLYQKTG-DLKRAMETFLQLLQLDPPVDIERIEDLIRRV  286 (895)
T ss_pred             HHHHHHHHHHh-cccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhC-hHHHHHHHHHHHHhhCCchhHHHHHHHHHHH
Confidence            99999955555 999999999999999999999999999999999988 5899999999999999821     1223455


Q ss_pred             HHHHHHcCCccccccCCCc
Q 029199          161 AGFLWETEEDNDECDAPSE  179 (197)
Q Consensus       161 a~~~~~~g~~~ea~~~~~~  179 (197)
                      +..+...++.+.|...+..
T Consensus       287 ~~~~~~~~~~e~a~~~le~  305 (895)
T KOG2076|consen  287 AHYFITHNERERAAKALEG  305 (895)
T ss_pred             HHHHHHhhHHHHHHHHHHH
Confidence            6667777766666544444

>PRK15331 chaperone protein SicA; Provisional

Probab=99.10  E-value=3e-10  Score=84.16  Aligned_cols=102  Identities=12%  Similarity=-0.042  Sum_probs=92.6

Q ss_pred             HHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 029199           77 VEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHV  156 (197)
Q Consensus        77 l~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~  156 (197)
                      ..+.++.-+..+.+|.-++. .|++++|+..|+-....+|.|+..|..+|.++..++. +++|+..|..+..+++++|..
T Consensus        30 ~gis~~~le~iY~~Ay~~y~-~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~-y~~Ai~~Y~~A~~l~~~dp~p  107 (165)
T PRK15331         30 HGIPQDMMDGLYAHAYEFYN-QGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQ-FQKACDLYAVAFTLLKNDYRP  107 (165)
T ss_pred             hCCCHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcccCCCCc
Confidence            34556667778888977787 9999999999999999999999999999999888885 999999999999999999999


Q ss_pred             HHHHHHHHHHcCCccccccCCCcc
Q 029199          157 HASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       157 ~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      .+..|.|+..+|+.++|...|+.+
T Consensus       108 ~f~agqC~l~l~~~~~A~~~f~~a  131 (165)
T PRK15331        108 VFFTGQCQLLMRKAAKARQCFELV  131 (165)
T ss_pred             cchHHHHHHHhCCHHHHHHHHHHH
Confidence            999999999999999998888764

>PRK11906 transcriptional regulator; Provisional

Probab=99.10  E-value=9.3e-10  Score=93.27  Aligned_cols=154  Identities=8%  Similarity=-0.034  Sum_probs=117.4

Q ss_pred             HHHHHhhhcCccc---ccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 029199           11 KVMEALWNAGFEQ---ERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFL   87 (197)
Q Consensus        11 ~~~~a~~~~~~~~---~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~   87 (197)
                      ..+.|+..|..+.   +.+|..+..|......--..--     .      .......+..+|.+.-+++++++|+|+.++
T Consensus       273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~-----~------g~~~~~~~~~~a~~~A~rAveld~~Da~a~  341 (458)
T PRK11906        273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLAL-----H------GKSELELAAQKALELLDYVSDITTVDGKIL  341 (458)
T ss_pred             HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHH-----h------cCCCchHHHHHHHHHHHHHHhcCCCCHHHH
Confidence            3467888888888   8888888777665544211000     0      000013677899999999999999999999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHH
Q 029199           88 SNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGF-LWE  166 (197)
Q Consensus        88 ~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~  166 (197)
                      ..+|.++.. .++++.|...|++|+.++|+.+.+++..|+++.-.|+ .++|.++++++++++|....+-...-++ .+-
T Consensus       342 ~~~g~~~~~-~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~-~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~  419 (458)
T PRK11906        342 AIMGLITGL-SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEK-IEEARICIDKSLQLEPRRRKAVVIKECVDMYV  419 (458)
T ss_pred             HHHHHHHHh-hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCC-HHHHHHHHHHHhccCchhhHHHHHHHHHHHHc
Confidence            999977777 8889999999999999999999999999999888785 9999999999999999876554333333 333


Q ss_pred             cCCccccccCC
Q 029199          167 TEEDNDECDAP  177 (197)
Q Consensus       167 ~g~~~ea~~~~  177 (197)
                      ....++++..|
T Consensus       420 ~~~~~~~~~~~  430 (458)
T PRK11906        420 PNPLKNNIKLY  430 (458)
T ss_pred             CCchhhhHHHH
Confidence            45556665444

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=99.09  E-value=4.3e-09  Score=84.76  Aligned_cols=92  Identities=14%  Similarity=0.247  Sum_probs=67.4

Q ss_pred             CCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHcCCH
Q 029199           63 GGDSQGVEEYYKKMVEENPGN---PLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPG---DGEILSQYAKLVWELHNDQ  136 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~P~~---~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~---~~~~~~~lg~~l~~~~~~~  136 (197)
                      .|++++|+..|++.++..|++   +.+++.+|.+++. .|++++|+..|+++++..|+   .+++++.+|.++..+| ++
T Consensus       156 ~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~-~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g-~~  233 (263)
T PRK10803        156 KSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYN-KGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKG-DT  233 (263)
T ss_pred             cCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcC-CH
Confidence            477777777777777777777   4677777777666 77777777777777777665   4567777777777766 47


Q ss_pred             HHHHHHHHHHHHhCCCCHHH
Q 029199          137 DRAATYYERAVHASPEDSHV  156 (197)
Q Consensus       137 ~~A~~~~~~al~~~p~~~~~  156 (197)
                      ++|...|+++++..|+...+
T Consensus       234 ~~A~~~~~~vi~~yP~s~~a  253 (263)
T PRK10803        234 AKAKAVYQQVIKKYPGTDGA  253 (263)
T ss_pred             HHHHHHHHHHHHHCcCCHHH
Confidence            77777777777777776644

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=99.08  E-value=4.7e-10  Score=71.37  Aligned_cols=64  Identities=28%  Similarity=0.345  Sum_probs=59.3

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 029199           63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAK  127 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~  127 (197)
                      .|++++|++.|++++..+|++..+++.+|.++.. .|++++|...+++++..+|+++.++..++.
T Consensus         4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~   67 (68)
T PF14559_consen    4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLK-QGQYDEAEELLERLLKQDPDNPEYQQLLAQ   67 (68)
T ss_dssp             TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHH-TT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence            5899999999999999999999999999988888 999999999999999999999988877764

...

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.08  E-value=3.2e-10  Score=102.13  Aligned_cols=154  Identities=14%  Similarity=0.097  Sum_probs=111.6

Q ss_pred             HHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 029199            8 EEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFL   87 (197)
Q Consensus         8 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~   87 (197)
                      ++++.+.|+..|..+++.+|.+...+++.|+..-..                 .....+..++..+.++..++|++|.++
T Consensus       211 kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~-----------------~d~~s~~~~~~ll~~ay~~n~~nP~~l  273 (1018)
T KOG2002|consen  211 KLGMSEKALLAFERALQLDPTCVSALVALGEVDLNF-----------------NDSDSYKKGVQLLQRAYKENNENPVAL  273 (1018)
T ss_pred             hccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHc-----------------cchHHHHHHHHHHHHHHhhcCCCcHHH
Confidence            455666677777777777777776666666553221                 112566778888888888888888888


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHH
Q 029199           88 SNYAQFLYQSKQDLPKAEEYYSRAILADPGDG---EILSQYAKLVWELHNDQDRAATYYERAVHASPED-SHVHASYAGF  163 (197)
Q Consensus        88 ~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~---~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~  163 (197)
                      ..|++.+|. .|++..+......++...-..+   ...|.+|.++..+| ++++|..+|..++..+|++ .-.++.+|.+
T Consensus       274 ~~LAn~fyf-K~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~G-d~ekA~~yY~~s~k~~~d~~~l~~~GlgQm  351 (1018)
T KOG2002|consen  274 NHLANHFYF-KKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQG-DFEKAFKYYMESLKADNDNFVLPLVGLGQM  351 (1018)
T ss_pred             HHHHHHHhh-cccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhc-cHHHHHHHHHHHHccCCCCccccccchhHH
Confidence            888877776 7888888888888777654333   33778888888877 4888888888888888887 6667888888


Q ss_pred             HHHcCCccccccCCCcc
Q 029199          164 LWETEEDNDECDAPSEL  180 (197)
Q Consensus       164 ~~~~g~~~ea~~~~~~~  180 (197)
                      +...|+++++...|+++
T Consensus       352 ~i~~~dle~s~~~fEkv  368 (1018)
T KOG2002|consen  352 YIKRGDLEESKFCFEKV  368 (1018)
T ss_pred             HHHhchHHHHHHHHHHH
Confidence            88888888887666664

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=99.07  E-value=1.3e-09  Score=95.48  Aligned_cols=132  Identities=13%  Similarity=-0.085  Sum_probs=106.0

Q ss_pred             HHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHh--CCCCHHHH
Q 029199           10 VKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEE--NPGNPLFL   87 (197)
Q Consensus        10 ~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~   87 (197)
                      .....|+..|.++++.+|+.+..+...++.......       +..     ....+...+.+..++++.+  +|.++.+|
T Consensus       356 ~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~-------~~~-----~~~~~l~~a~~~~~~a~al~~~~~~~~~~  423 (517)
T PRK10153        356 KSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHS-------QQP-----LDEKQLAALSTELDNIVALPELNVLPRIY  423 (517)
T ss_pred             HHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHh-------cCC-----ccHHHHHHHHHHHHHhhhcccCcCChHHH
Confidence            457799999999999999999888877665422111       000     1113456778888887774  88889999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 029199           88 SNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHV  156 (197)
Q Consensus        88 ~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~  156 (197)
                      ..+|..... .|++++|...+++|+.++| +..++..+|.++...|+ .++|++.|++|++++|.++..
T Consensus       424 ~ala~~~~~-~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~-~~eA~~~~~~A~~L~P~~pt~  489 (517)
T PRK10153        424 EILAVQALV-KGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGD-NRLAADAYSTAFNLRPGENTL  489 (517)
T ss_pred             HHHHHHHHh-cCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCCchH
Confidence            999955555 8999999999999999999 58999999999999885 999999999999999998853

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=99.06  E-value=1.4e-09  Score=92.18  Aligned_cols=71  Identities=17%  Similarity=0.089  Sum_probs=66.2

Q ss_pred             HhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 029199           78 EENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEI---LSQYAKLVWELHNDQDRAATYYERAVHAS  150 (197)
Q Consensus        78 ~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~---~~~lg~~l~~~~~~~~~A~~~~~~al~~~  150 (197)
                      ..+|+++.+|+|+|..++. .|++++|+.+|+++|+++|+++++   |+|+|.+|..+|+ +++|+++|++|+++.
T Consensus        69 ~~dP~~a~a~~NLG~AL~~-lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr-~dEAla~LrrALels  142 (453)
T PLN03098         69 EADVKTAEDAVNLGLSLFS-KGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREE-GKKAADCLRTALRDY  142 (453)
T ss_pred             cCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhc
Confidence            3689999999999988888 999999999999999999999965   9999999999885 999999999999983

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.06  E-value=2.4e-10  Score=95.05  Aligned_cols=165  Identities=10%  Similarity=0.023  Sum_probs=122.4

Q ss_pred             CCCcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCC--------------CCCCCCCCC--cccCCCC
Q 029199            1 MAGTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGG--------------GTGGGGSGF--YPAGSGG   64 (197)
Q Consensus         1 ~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~--------------~~~~~~~~~--~~~~~~g   64 (197)
                      |||+.|-.++|+++|+.-|.-++-..|.+-++|-..=..+-..+++.+              .+.+-+-.|  +.+..-.
T Consensus       339 lKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~  418 (564)
T KOG1174|consen  339 LKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPR  418 (564)
T ss_pred             hccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCch
Confidence            799999999999999999999988888776554322222222222111              000111111  1222223


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 029199           65 DSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYE  144 (197)
Q Consensus        65 ~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~  144 (197)
                      --++|.+.|+++++++|....+...++.++.. .|.+..++.++++.|...|+ ...+..+|.++..++. +++|.++|.
T Consensus       419 ~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~-Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne-~Q~am~~y~  495 (564)
T KOG1174|consen  419 MREKAKKFAEKSLKINPIYTPAVNLIAELCQV-EGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNE-PQKAMEYYY  495 (564)
T ss_pred             hHHHHHHHHHhhhccCCccHHHHHHHHHHHHh-hCccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhh-HHHHHHHHH
Confidence            45899999999999999999999999977776 89999999999999987775 4678899999999885 999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHcC
Q 029199          145 RAVHASPEDSHVHASYAGFLWETE  168 (197)
Q Consensus       145 ~al~~~p~~~~~~~~la~~~~~~g  168 (197)
                      .||+++|.+....-.+-.+-.+..
T Consensus       496 ~ALr~dP~~~~sl~Gl~~lEK~~~  519 (564)
T KOG1174|consen  496 KALRQDPKSKRTLRGLRLLEKSDD  519 (564)
T ss_pred             HHHhcCccchHHHHHHHHHHhccC
Confidence            999999999988776665544444

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.05  E-value=2.4e-09  Score=93.45  Aligned_cols=158  Identities=18%  Similarity=0.220  Sum_probs=122.4

Q ss_pred             CCCcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhC
Q 029199            1 MAGTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEEN   80 (197)
Q Consensus         1 ~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~   80 (197)
                      |+|-++.++++++.|-.-|..+.+.=|+++++|+...--=..                    .|+.-+|...++++.-.|
T Consensus       690 mlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk--------------------~~~~~rAR~ildrarlkN  749 (913)
T KOG0495|consen  690 MLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEK--------------------DGQLVRARSILDRARLKN  749 (913)
T ss_pred             HHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHH--------------------hcchhhHHHHHHHHHhcC
Confidence            567777777777777777777777777777777664332222                    367778888888888888


Q ss_pred             CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH------------------------------HHHHHHHHHH
Q 029199           81 PGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGE------------------------------ILSQYAKLVW  130 (197)
Q Consensus        81 P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~------------------------------~~~~lg~~l~  130 (197)
                      |++...|...-.+=.+ .|..++|.....+||+-.|++..                              ++...|.+++
T Consensus       750 Pk~~~lwle~Ir~ElR-~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw  828 (913)
T KOG0495|consen  750 PKNALLWLESIRMELR-AGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFW  828 (913)
T ss_pred             CCcchhHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHH
Confidence            8888888876655555 78888888888888887776544                              4455566667


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          131 ELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       131 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      .-. .+++|.++|.++++++|++.++|-.+-..+.+.|..++..+.+..+
T Consensus       829 ~e~-k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c  877 (913)
T KOG0495|consen  829 SEK-KIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKC  877 (913)
T ss_pred             HHH-HHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            755 4999999999999999999999999999999999888877666664

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.04  E-value=1.2e-09  Score=89.21  Aligned_cols=175  Identities=15%  Similarity=0.093  Sum_probs=95.0

Q ss_pred             CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCC--------CCCCCCCC------CcccCCCCCHHH
Q 029199            3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGG--------GTGGGGSG------FYPAGSGGDSQG   68 (197)
Q Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~--------~~~~~~~~------~~~~~~~g~~~~   68 (197)
                      |..+=--+++.+|++-|--+++.+|++-..++.++..+-..|...-        ....|.+.      +..+++.|++++
T Consensus        45 Gk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~  124 (504)
T KOG0624|consen   45 GKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQ  124 (504)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHH
Confidence            4455566888999999999999999999999999988777543110        12233321      223344455555


Q ss_pred             HHHHHHHHHHhCCCCHH---HHHHHHHH------------HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 029199           69 VEEYYKKMVEENPGNPL---FLSNYAQF------------LYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELH  133 (197)
Q Consensus        69 A~~~~~~al~~~P~~~~---~~~~la~~------------l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~  133 (197)
                      |+..|..+|+-+|++..   +.-.++.+            .+. .|+...|+....+.|++.|=++..+...+.+|...+
T Consensus       125 A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~-~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~  203 (504)
T KOG0624|consen  125 AEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASG-SGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEG  203 (504)
T ss_pred             HHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhc-CCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcC
Confidence            55555555555553322   22222210            111 234444555555555555555555555555555544


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCc
Q 029199          134 NDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSE  179 (197)
Q Consensus       134 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~  179 (197)
                       +..+|+.-++.+-++..+|.+.++..+.+++..|+.+......++
T Consensus       204 -e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRE  248 (504)
T KOG0624|consen  204 -EPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRE  248 (504)
T ss_pred             -cHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence             255555555555555555555555555555555555555444444

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.04  E-value=3.1e-10  Score=98.41  Aligned_cols=156  Identities=16%  Similarity=0.172  Sum_probs=120.4

Q ss_pred             CcchhHHHHHHHHhhhcCccccc--------CCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHH
Q 029199            3 GTALSEEVKVMEALWNAGFEQER--------GTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYK   74 (197)
Q Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~~--------~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~   74 (197)
                      |.+|...|++++|+..+..+++.        .|.-..+....|..+..                    .+++.+|+..|+
T Consensus       206 a~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~--------------------~~k~~eAv~ly~  265 (508)
T KOG1840|consen  206 AEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRS--------------------LGKYDEAVNLYE  265 (508)
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHH--------------------hccHHHHHHHHH
Confidence            45678889999998888777665        22223333334444333                    599999999999


Q ss_pred             HHHHh--------CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHcCCHHH
Q 029199           75 KMVEE--------NPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILAD--------PGDGEILSQYAKLVWELHNDQDR  138 (197)
Q Consensus        75 ~al~~--------~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~--------P~~~~~~~~lg~~l~~~~~~~~~  138 (197)
                      +|+.+        +|.-+.++.+||.+++. .|++++|..++++|+.+.        |.=+..+.+++.++..+++ +++
T Consensus       266 ~AL~i~e~~~G~~h~~va~~l~nLa~ly~~-~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~-~Ee  343 (508)
T KOG1840|consen  266 EALTIREEVFGEDHPAVAATLNNLAVLYYK-QGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNE-YEE  343 (508)
T ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHHhc-cCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcc-hhH
Confidence            99986        45557789999977776 999999999999999873        3344567788888888775 999


Q ss_pred             HHHHHHHHHHhC-----CCC---HHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          139 AATYYERAVHAS-----PED---SHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       139 A~~~~~~al~~~-----p~~---~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      |..++++++++-     ++|   +..+.++|.+|..+|+++||++.+..+
T Consensus       344 a~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~a  393 (508)
T KOG1840|consen  344 AKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKA  393 (508)
T ss_pred             HHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence            999999999873     334   457889999999999999998877764

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.00  E-value=8.3e-09  Score=87.42  Aligned_cols=124  Identities=19%  Similarity=0.063  Sum_probs=106.6

Q ss_pred             hHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHH
Q 029199            7 SEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLF   86 (197)
Q Consensus         7 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~   86 (197)
                      -+.++..+|...|+..+...|+|+..+-..|-.+-.                    .++.++|.+.+++++.++|+.+..
T Consensus       317 ~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~--------------------~nk~~~A~e~~~kal~l~P~~~~l  376 (484)
T COG4783         317 YLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLE--------------------ANKAKEAIERLKKALALDPNSPLL  376 (484)
T ss_pred             HHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHH--------------------cCChHHHHHHHHHHHhcCCCccHH
Confidence            356677788888888888899999888777766555                    399999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 029199           87 LSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPE  152 (197)
Q Consensus        87 ~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~  152 (197)
                      +.++|..+.. .|++.+|+..+.+.+..+|+||..|..++..|-.+|. ..+|...+-....+...
T Consensus       377 ~~~~a~all~-~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~-~~~a~~A~AE~~~~~G~  440 (484)
T COG4783         377 QLNLAQALLK-GGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGN-RAEALLARAEGYALAGR  440 (484)
T ss_pred             HHHHHHHHHh-cCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCc-hHHHHHHHHHHHHhCCC
Confidence            9999999998 9999999999999999999999999999999988885 67777777666665543

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=99.00  E-value=5.6e-09  Score=74.25  Aligned_cols=92  Identities=20%  Similarity=0.123  Sum_probs=55.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHH
Q 029199           85 LFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGD---GEILSQYAKLVWELHNDQDRAATYYERAVHASPE---DSHVHA  158 (197)
Q Consensus        85 ~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~---~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~---~~~~~~  158 (197)
                      .+++++|.++-. .|+.++|+..|++++...++.   ..++..+|..+..+|+ +++|+..+++++...|+   +..+..
T Consensus         2 ~~~~~~A~a~d~-~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~-~deA~~~L~~~~~~~p~~~~~~~l~~   79 (120)
T PF12688_consen    2 RALYELAWAHDS-LGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGR-YDEALALLEEALEEFPDDELNAALRV   79 (120)
T ss_pred             chHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHCCCccccHHHHH
Confidence            345566644443 666666666666666654433   3455666666666664 66666666666666565   556666


Q ss_pred             HHHHHHHHcCCccccccCCC
Q 029199          159 SYAGFLWETEEDNDECDAPS  178 (197)
Q Consensus       159 ~la~~~~~~g~~~ea~~~~~  178 (197)
                      .++.++..+|+.+||...+-
T Consensus        80 f~Al~L~~~gr~~eAl~~~l   99 (120)
T PF12688_consen   80 FLALALYNLGRPKEALEWLL   99 (120)
T ss_pred             HHHHHHHHCCCHHHHHHHHH
Confidence            66666666666666654443

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.99  E-value=4.9e-09  Score=84.39  Aligned_cols=97  Identities=14%  Similarity=0.105  Sum_probs=85.2

Q ss_pred             CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHH
Q 029199           83 NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGD---GEILSQYAKLVWELHNDQDRAATYYERAVHASPE---DSHV  156 (197)
Q Consensus        83 ~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~---~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~---~~~~  156 (197)
                      +...++..+..+....|++++|+..|++.++.+|++   +.+++.+|.+|+..| ++++|+..|+++++..|+   .+++
T Consensus       141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g-~~~~A~~~f~~vv~~yP~s~~~~dA  219 (263)
T PRK10803        141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKG-KKDDAAYYFASVVKNYPKSPKAADA  219 (263)
T ss_pred             CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHCCCCcchhHH
Confidence            456677777555333799999999999999999998   589999999999977 599999999999998877   5788


Q ss_pred             HHHHHHHHHHcCCccccccCCCcc
Q 029199          157 HASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       157 ~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      ++.+|.++..+|+.++|...|+++
T Consensus       220 l~klg~~~~~~g~~~~A~~~~~~v  243 (263)
T PRK10803        220 MFKVGVIMQDKGDTAKAKAVYQQV  243 (263)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHH
Confidence            999999999999999999999876

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.99  E-value=3.2e-09  Score=68.43  Aligned_cols=66  Identities=23%  Similarity=0.238  Sum_probs=60.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 029199           61 GSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAK  127 (197)
Q Consensus        61 ~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~  127 (197)
                      ...+++++|++++++++.++|+++..|..+|.+++. +|++.+|+..|+++++.+|+++.+....+.
T Consensus         6 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~-~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~   71 (73)
T PF13371_consen    6 LQQEDYEEALEVLERALELDPDDPELWLQRARCLFQ-LGRYEEALEDLERALELSPDDPDARALRAM   71 (73)
T ss_pred             HhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHH-hccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence            446999999999999999999999999999988887 999999999999999999999998766553

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.99  E-value=1.9e-09  Score=83.14  Aligned_cols=106  Identities=10%  Similarity=0.093  Sum_probs=95.9

Q ss_pred             CChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q 029199           28 VGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEY  107 (197)
Q Consensus        28 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~  107 (197)
                      ..+.+++.+|+-.+.+                    |-..-|.-.|.+++.+.|+-+.+.+-+| +++...|+++.|.+.
T Consensus        63 eRA~l~fERGvlYDSl--------------------GL~~LAR~DftQaLai~P~m~~vfNyLG-~Yl~~a~~fdaa~ea  121 (297)
T COG4785          63 ERAQLLFERGVLYDSL--------------------GLRALARNDFSQALAIRPDMPEVFNYLG-IYLTQAGNFDAAYEA  121 (297)
T ss_pred             HHHHHHHHhcchhhhh--------------------hHHHHHhhhhhhhhhcCCCcHHHHHHHH-HHHHhcccchHHHHH
Confidence            4578899999988886                    7888999999999999999999999999 555559999999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 029199          108 YSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSH  155 (197)
Q Consensus       108 ~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~  155 (197)
                      |+..+++||.+..+..|.|..++-.|| ++-|.+-+.+-.+.||++|-
T Consensus       122 Fds~~ELDp~y~Ya~lNRgi~~YY~gR-~~LAq~d~~~fYQ~D~~DPf  168 (297)
T COG4785         122 FDSVLELDPTYNYAHLNRGIALYYGGR-YKLAQDDLLAFYQDDPNDPF  168 (297)
T ss_pred             hhhHhccCCcchHHHhccceeeeecCc-hHhhHHHHHHHHhcCCCChH
Confidence            999999999999999999999888776 89999999999999999884

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.98  E-value=4.8e-09  Score=91.28  Aligned_cols=155  Identities=14%  Similarity=0.065  Sum_probs=130.1

Q ss_pred             CCCcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhC
Q 029199            1 MAGTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEEN   80 (197)
Q Consensus         1 ~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~   80 (197)
                      |||..|.-.|+-.+|......++.-++.+.-+|..-|+....                    ..+|++|++||+.|+.++
T Consensus        46 mkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~--------------------dK~Y~eaiKcy~nAl~~~  105 (700)
T KOG1156|consen   46 MKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRS--------------------DKKYDEAIKCYRNALKIE  105 (700)
T ss_pred             hccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhh--------------------hhhHHHHHHHHHHHHhcC
Confidence            799999999999999999999999999999999999987655                    589999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCH---
Q 029199           81 PGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHAS---PEDS---  154 (197)
Q Consensus        81 P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~---p~~~---  154 (197)
                      |+|..+|..++ ++..++++++.....-.+.++++|.+-..|..+++.....|. +..|...++.-....   |+..   
T Consensus       106 ~dN~qilrDls-lLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~-y~~A~~il~ef~~t~~~~~s~~~~e  183 (700)
T KOG1156|consen  106 KDNLQILRDLS-LLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGE-YKMALEILEEFEKTQNTSPSKEDYE  183 (700)
T ss_pred             CCcHHHHHHHH-HHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhccCCCHHHHH
Confidence            99999999999 555569999999999999999999999999999999998884 899988877766554   4322   


Q ss_pred             --HHHHHHHHHHHHcCCccccccCC
Q 029199          155 --HVHASYAGFLWETEEDNDECDAP  177 (197)
Q Consensus       155 --~~~~~la~~~~~~g~~~ea~~~~  177 (197)
                        +.......++.+.|..+++.+..
T Consensus       184 ~se~~Ly~n~i~~E~g~~q~ale~L  208 (700)
T KOG1156|consen  184 HSELLLYQNQILIEAGSLQKALEHL  208 (700)
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHH
Confidence              23344455566666666654443

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.97  E-value=2.4e-08  Score=70.97  Aligned_cols=98  Identities=12%  Similarity=0.099  Sum_probs=85.7

Q ss_pred             hhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHHHHHH
Q 029199           30 QEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGN---PLFLSNYAQFLYQSKQDLPKAEE  106 (197)
Q Consensus        30 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~---~~~~~~la~~l~~~~g~~~~A~~  106 (197)
                      |.+++..+...+.                    .|+.++|+..|++++...+..   ..++.++|..+.. .|++++|+.
T Consensus         1 ~~~~~~~A~a~d~--------------------~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~-LG~~deA~~   59 (120)
T PF12688_consen    1 PRALYELAWAHDS--------------------LGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRN-LGRYDEALA   59 (120)
T ss_pred             CchHHHHHHHHHh--------------------cCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH-cCCHHHHHH
Confidence            4566777777777                    499999999999999986555   5688999988887 999999999


Q ss_pred             HHHHHHHhCCC---CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 029199          107 YYSRAILADPG---DGEILSQYAKLVWELHNDQDRAATYYERAVHA  149 (197)
Q Consensus       107 ~~~~al~l~P~---~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~  149 (197)
                      .+++++...|+   +..+...++.+++..|+ .++|+..+-.++.-
T Consensus        60 ~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr-~~eAl~~~l~~la~  104 (120)
T PF12688_consen   60 LLEEALEEFPDDELNAALRVFLALALYNLGR-PKEALEWLLEALAE  104 (120)
T ss_pred             HHHHHHHHCCCccccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHH
Confidence            99999999898   88999999999999997 89999999988863

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.95  E-value=3.5e-09  Score=90.20  Aligned_cols=151  Identities=9%  Similarity=0.021  Sum_probs=116.2

Q ss_pred             chhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHH--------
Q 029199            5 ALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKM--------   76 (197)
Q Consensus         5 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a--------   76 (197)
                      ++-..++..+|+..+....+.+|+++..+...+-.+-..                    |++++|++.+.+.        
T Consensus       162 l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~--------------------gdw~~a~~~l~~l~k~~~~~~  221 (398)
T PRK10747        162 IQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRT--------------------GAWSSLLDILPSMAKAHVGDE  221 (398)
T ss_pred             HHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH--------------------HhHHHHHHHHHHHHHcCCCCH
Confidence            344567777888888888888888877666555444332                    4444444222222        


Q ss_pred             ----------------------------------HHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 029199           77 ----------------------------------VEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEIL  122 (197)
Q Consensus        77 ----------------------------------l~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~  122 (197)
                                                        -+..|+++.++..++..+.. .|+.++|...++++++ .|.++...
T Consensus       222 ~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~-~g~~~~A~~~L~~~l~-~~~~~~l~  299 (398)
T PRK10747        222 EHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIE-CDDHDTAQQIILDGLK-RQYDERLV  299 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHh-cCCCHHHH
Confidence                                              23456688899999988887 9999999999999999 56677776


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          123 SQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       123 ~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      ..++.+.  .+ +.+++++.+++.++.+|+|+..+..+|.++...|++++|.+.|++.
T Consensus       300 ~l~~~l~--~~-~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~a  354 (398)
T PRK10747        300 LLIPRLK--TN-NPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAA  354 (398)
T ss_pred             HHHhhcc--CC-ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            6666542  25 5899999999999999999999999999999999999999999986

>TIGR00540 hemY_coli hemY protein

Probab=98.95  E-value=1.2e-08  Score=87.24  Aligned_cols=117  Identities=14%  Similarity=0.080  Sum_probs=105.6

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHcCCHHHHHH
Q 029199           63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDG-EILSQYAKLVWELHNDQDRAAT  141 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~-~~~~~lg~~l~~~~~~~~~A~~  141 (197)
                      .|+++.|.+.+.++.+..|+....+...|.+... .|++++|.++++++.+..|++. .+...++.++...+ ++++|..
T Consensus        97 ~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~-~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~-~~~~Al~  174 (409)
T TIGR00540        97 EGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQ-RGDEARANQHLEEAAELAGNDNILVEIARTRILLAQN-ELHAARH  174 (409)
T ss_pred             CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCC-CHHHHHH
Confidence            5999999999999999999988888877877776 9999999999999999999986 57777788888877 5999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCccc
Q 029199          142 YYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSELD  181 (197)
Q Consensus       142 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~~  181 (197)
                      .+++.++..|+++.++..++.++..+|+++++.+.+.++.
T Consensus       175 ~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~  214 (409)
T TIGR00540       175 GVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMA  214 (409)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            9999999999999999999999999999999988777763

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.94  E-value=6.4e-09  Score=95.24  Aligned_cols=112  Identities=12%  Similarity=0.072  Sum_probs=95.3

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-------------------HHHH
Q 029199           63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDG-------------------EILS  123 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~-------------------~~~~  123 (197)
                      .+++++|++.++.+++.+|+...+++.+|.+++. .++++++...  +++.+.+.+.                   .+++
T Consensus        44 ~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q-~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~  120 (906)
T PRK14720         44 ENLTDEAKDICEEHLKEHKKSISALYISGILSLS-RRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALR  120 (906)
T ss_pred             cCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHh-hcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHH
Confidence            4899999999999999999999999999975555 7877776655  6666666665                   8999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCc
Q 029199          124 QYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSE  179 (197)
Q Consensus       124 ~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~  179 (197)
                      .+|.||-++|+ .++|...|+++|+.+|+|+.+..++|..|... +.++|...+.+
T Consensus       121 ~LA~~Ydk~g~-~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~K  174 (906)
T PRK14720        121 TLAEAYAKLNE-NKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKK  174 (906)
T ss_pred             HHHHHHHHcCC-hHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHH
Confidence            99999999886 89999999999999999999999999999999 88888665554

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.94  E-value=5.5e-09  Score=85.45  Aligned_cols=156  Identities=15%  Similarity=0.119  Sum_probs=130.2

Q ss_pred             CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCC--------CCCCCCCCCc----------------
Q 029199            3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGG--------GTGGGGSGFY----------------   58 (197)
Q Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~--------~~~~~~~~~~----------------   58 (197)
                      |++|=-+||.+.|+..|+.+++..|+=....+.+|..+-+.|....        ..-.|.+...                
T Consensus        79 aT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l  158 (504)
T KOG0624|consen   79 ATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVL  158 (504)
T ss_pred             HHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHH
Confidence            5677788999999999999999999988888999988877775332        1112321110                


Q ss_pred             -----ccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 029199           59 -----PAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELH  133 (197)
Q Consensus        59 -----~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~  133 (197)
                           ...-.|++..++....+.|++.|=++..+..++.++.. .|+..+|+..++.+-++..+|.+.++.+..+++..|
T Consensus       159 ~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~-~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vg  237 (504)
T KOG0624|consen  159 VQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIA-EGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVG  237 (504)
T ss_pred             HHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHh-cCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhh
Confidence                 11235999999999999999999999999999988887 999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 029199          134 NDQDRAATYYERAVHASPEDSHVHASY  160 (197)
Q Consensus       134 ~~~~~A~~~~~~al~~~p~~~~~~~~l  160 (197)
                       |.+.++..++.+|+++|++-..+-.+
T Consensus       238 -d~~~sL~~iRECLKldpdHK~Cf~~Y  263 (504)
T KOG0624|consen  238 -DAENSLKEIRECLKLDPDHKLCFPFY  263 (504)
T ss_pred             -hHHHHHHHHHHHHccCcchhhHHHHH
Confidence             59999999999999999987665443

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.93  E-value=4.1e-09  Score=86.21  Aligned_cols=105  Identities=20%  Similarity=0.162  Sum_probs=94.9

Q ss_pred             CcccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 029199           57 FYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQ  136 (197)
Q Consensus        57 ~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~  136 (197)
                      |..|...|.|++|+.||.+++..+|.++..+.|++..|++ ...|..|+..+..|+.+|-...-++...|.+-..+|. .
T Consensus       104 GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk-~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~-~  181 (536)
T KOG4648|consen  104 GNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLK-QKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN-N  181 (536)
T ss_pred             hhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHH-HHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh-H
Confidence            4566778999999999999999999999999999988887 9999999999999999999999999999999999996 8


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 029199          137 DRAATYYERAVHASPEDSHVHASYAGF  163 (197)
Q Consensus       137 ~~A~~~~~~al~~~p~~~~~~~~la~~  163 (197)
                      .+|.+-++++|++.|++.+..-.++.+
T Consensus       182 ~EAKkD~E~vL~LEP~~~ELkK~~a~i  208 (536)
T KOG4648|consen  182 MEAKKDCETVLALEPKNIELKKSLARI  208 (536)
T ss_pred             HHHHHhHHHHHhhCcccHHHHHHHHHh
Confidence            999999999999999988876655544

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.87  E-value=1e-08  Score=85.27  Aligned_cols=130  Identities=16%  Similarity=0.096  Sum_probs=104.4

Q ss_pred             CCcchhHHHHHHHHhhhcCcccccCCC----Ch-----------hhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCH
Q 029199            2 AGTALSEEVKVMEALWNAGFEQERGTV----GQ-----------EMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDS   66 (197)
Q Consensus         2 ~~~~~~~~~~~~~a~~~~~~~~~~~p~----~~-----------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   66 (197)
                      .||+|=+.+|+..|+..|.+++..-.+    ++           .++++..+.                    +.+.+++
T Consensus       214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c--------------------~lKl~~~  273 (397)
T KOG0543|consen  214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAAC--------------------YLKLKEY  273 (397)
T ss_pred             hhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHH--------------------HHhhhhH
Confidence            588899999999999887664433221    11           122222222                    3345999


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 029199           67 QGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERA  146 (197)
Q Consensus        67 ~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~a  146 (197)
                      .+|++...++|.++|+|..+++..|.++.. +|+++.|+..|+++++++|+|-.+...+..+-.+..+..++..+.|.+.
T Consensus       274 ~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~-~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~m  352 (397)
T KOG0543|consen  274 KEAIESCNKVLELDPNNVKALYRRGQALLA-LGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANM  352 (397)
T ss_pred             HHHHHHHHHHHhcCCCchhHHHHHHHHHHh-hccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999888 9999999999999999999999999999988777776566778889998


Q ss_pred             HHhCCC
Q 029199          147 VHASPE  152 (197)
Q Consensus       147 l~~~p~  152 (197)
                      +..-+.
T Consensus       353 F~k~~~  358 (397)
T KOG0543|consen  353 FAKLAE  358 (397)
T ss_pred             hhcccc
Confidence            877653

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.86  E-value=4.6e-08  Score=74.68  Aligned_cols=102  Identities=21%  Similarity=0.255  Sum_probs=89.3

Q ss_pred             ccCCCCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 029199           59 PAGSGGDSQGVEEYYKKMVEENPGNPL-----FLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELH  133 (197)
Q Consensus        59 ~~~~~g~~~~A~~~~~~al~~~P~~~~-----~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~  133 (197)
                      .+...|+|++|..-|..||.+-|..+.     .+.|.|.++.+ ++.++.|+..+.++++++|.+.-++...+.+|-++.
T Consensus       104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iK-l~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e  182 (271)
T KOG4234|consen  104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIK-LRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME  182 (271)
T ss_pred             HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHH-hhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence            455679999999999999999998743     56788877776 999999999999999999999999999999999987


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 029199          134 NDQDRAATYYERAVHASPEDSHVHASYAG  162 (197)
Q Consensus       134 ~~~~~A~~~~~~al~~~p~~~~~~~~la~  162 (197)
                      + +++|++-|.+.++++|.+-.+.-....
T Consensus       183 k-~eealeDyKki~E~dPs~~ear~~i~r  210 (271)
T KOG4234|consen  183 K-YEEALEDYKKILESDPSRREAREAIAR  210 (271)
T ss_pred             h-HHHHHHHHHHHHHhCcchHHHHHHHHh
Confidence            5 999999999999999998876554443

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.85  E-value=1.3e-08  Score=86.36  Aligned_cols=72  Identities=18%  Similarity=0.111  Sum_probs=63.1

Q ss_pred             cccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHhcC
Q 029199           23 QERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLF---LSNYAQFLYQSKQ   99 (197)
Q Consensus        23 ~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~---~~~la~~l~~~~g   99 (197)
                      .+.+|++++.|+..|+.+..                    .|++++|+.+|+++++++|++..+   |+|+|.++.. +|
T Consensus        68 ~~~dP~~a~a~~NLG~AL~~--------------------lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~-LG  126 (453)
T PLN03098         68 SEADVKTAEDAVNLGLSLFS--------------------KGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAY-RE  126 (453)
T ss_pred             ccCCCCCHHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHH-cC
Confidence            45678888888888888766                    499999999999999999999965   9999966666 99


Q ss_pred             CHHHHHHHHHHHHHhC
Q 029199          100 DLPKAEEYYSRAILAD  115 (197)
Q Consensus       100 ~~~~A~~~~~~al~l~  115 (197)
                      ++++|+.+|++|+++.
T Consensus       127 r~dEAla~LrrALels  142 (453)
T PLN03098        127 EGKKAADCLRTALRDY  142 (453)
T ss_pred             CHHHHHHHHHHHHHhc
Confidence            9999999999999983

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.85  E-value=1.1e-08  Score=88.84  Aligned_cols=156  Identities=15%  Similarity=0.055  Sum_probs=119.2

Q ss_pred             CcchhHHHHHHHHhhhcCccccc--------CCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHH
Q 029199            3 GTALSEEVKVMEALWNAGFEQER--------GTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYK   74 (197)
Q Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~~--------~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~   74 (197)
                      |.+|...+++.+|+..|..+...        .|.-+..+...+..+..                    .|++++|..+++
T Consensus       248 a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~--------------------~GKf~EA~~~~e  307 (508)
T KOG1840|consen  248 ALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYK--------------------QGKFAEAEEYCE  307 (508)
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhc--------------------cCChHHHHHHHH
Confidence            56777888899988888765532        22223444444444433                    599999999999


Q ss_pred             HHHHhC--------CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----C---CCHHHHHHHHHHHHHHcCCHHH
Q 029199           75 KMVEEN--------PGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILAD-----P---GDGEILSQYAKLVWELHNDQDR  138 (197)
Q Consensus        75 ~al~~~--------P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~-----P---~~~~~~~~lg~~l~~~~~~~~~  138 (197)
                      +|+++-        |.-...+.+++.++.. ++++++|+.+|++++++.     +   .-+.+..++|.+|+.+|+ +++
T Consensus       308 ~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~-~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk-~~e  385 (508)
T KOG1840|consen  308 RALEIYEKLLGASHPEVAAQLSELAAILQS-MNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGK-YKE  385 (508)
T ss_pred             HHHHHHHHhhccChHHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcc-hhH
Confidence            998763        3334567778866665 999999999999999872     3   446789999999999997 999


Q ss_pred             HHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          139 AATYYERAVHAS--------PEDSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       139 A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      |.+.|++|+++.        +.-...+.++|..+.+.+++.+|.+.|.+.
T Consensus       386 a~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~  435 (508)
T KOG1840|consen  386 AEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEA  435 (508)
T ss_pred             HHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHH
Confidence            999999999875        333567889999999999999998887773

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.84  E-value=4.8e-08  Score=85.47  Aligned_cols=156  Identities=19%  Similarity=0.173  Sum_probs=115.0

Q ss_pred             cchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCC
Q 029199            4 TALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGN   83 (197)
Q Consensus         4 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~   83 (197)
                      +++.+.|++++|+.-|......-++...+.-.+|-.+..+                    |++++|...|...|+.||++
T Consensus        12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kL--------------------g~~~eA~~~y~~Li~rNPdn   71 (517)
T PF12569_consen   12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKL--------------------GRKEEAEKIYRELIDRNPDN   71 (517)
T ss_pred             HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHc--------------------CCHHHHHHHHHHHHHHCCCc
Confidence            5788899999999999887777777777777777777664                    89999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcC----------------------------------------------------------------
Q 029199           84 PLFLSNYAQFLYQSKQ----------------------------------------------------------------   99 (197)
Q Consensus        84 ~~~~~~la~~l~~~~g----------------------------------------------------------------   99 (197)
                      ...+..|..++....+                                                                
T Consensus        72 ~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~  151 (517)
T PF12569_consen   72 YDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKP  151 (517)
T ss_pred             HHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence            9998888866522111                                                                


Q ss_pred             ---CHHHHH---HHHHH---HHHh------------CCCCH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 029199          100 ---DLPKAE---EYYSR---AILA------------DPGDG--EILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHV  156 (197)
Q Consensus       100 ---~~~~A~---~~~~~---al~l------------~P~~~--~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~  156 (197)
                         +..++.   .++..   .++.            .|...  ++++.++..+-..| ++++|++++++||...|+.++.
T Consensus       152 Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g-~~~~Al~~Id~aI~htPt~~el  230 (517)
T PF12569_consen  152 LYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLG-DYEKALEYIDKAIEHTPTLVEL  230 (517)
T ss_pred             HHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHhcCCCcHHH
Confidence               222211   11111   1111            11112  45577788877877 5999999999999999999999


Q ss_pred             HHHHHHHHHHcCCccccccCCCcc
Q 029199          157 HASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       157 ~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      +...|.++.+.|++.+|.+..+..
T Consensus       231 y~~KarilKh~G~~~~Aa~~~~~A  254 (517)
T PF12569_consen  231 YMTKARILKHAGDLKEAAEAMDEA  254 (517)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHH
Confidence            999999999999999987666654

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.83  E-value=1.5e-08  Score=92.78  Aligned_cols=139  Identities=17%  Similarity=0.047  Sum_probs=107.5

Q ss_pred             chhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCH
Q 029199            5 ALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNP   84 (197)
Q Consensus         5 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~   84 (197)
                      .+..+++..+++......++..|++...++..|+-....+.......-  ...-.+....++ .++++|...+...|++.
T Consensus        40 ~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~-~~ve~~~~~i~~~~~~k  116 (906)
T PRK14720         40 AYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKW-AIVEHICDKILLYGENK  116 (906)
T ss_pred             HHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccch-hHHHHHHHHHHhhhhhh
Confidence            344667788888888888999999999999999954443321111110  111122333455 78888888888899999


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 029199           85 LFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHA  149 (197)
Q Consensus        85 ~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~  149 (197)
                      .+++.||.+|-. +|+.++|...|+++|+++|+|+.+++++|..|...  ++++|++++.+|+..
T Consensus       117 ~Al~~LA~~Ydk-~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~--dL~KA~~m~~KAV~~  178 (906)
T PRK14720        117 LALRTLAEAYAK-LNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE--DKEKAITYLKKAIYR  178 (906)
T ss_pred             HHHHHHHHHHHH-cCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh--hHHHHHHHHHHHHHH
Confidence            999999966665 99999999999999999999999999999998886  599999999888765

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=98.81  E-value=9.7e-09  Score=89.78  Aligned_cols=170  Identities=14%  Similarity=0.025  Sum_probs=135.0

Q ss_pred             HHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCC-C-------CC-CCCCCCCC----Cccc-CCCCCHHHHHHHHH
Q 029199            9 EVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGG-R-------GG-GTGGGGSG----FYPA-GSGGDSQGVEEYYK   74 (197)
Q Consensus         9 ~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~-~-------~~-~~~~~~~~----~~~~-~~~g~~~~A~~~~~   74 (197)
                      .|+|-.|...++.+.+..|++-++|++.- -+..... +       +. -+.+|+..    .+.+ ...++.++|++.++
T Consensus       597 agdv~~ar~il~~af~~~pnseeiwlaav-Kle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllE  675 (913)
T KOG0495|consen  597 AGDVPAARVILDQAFEANPNSEEIWLAAV-KLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLE  675 (913)
T ss_pred             cCCcHHHHHHHHHHHHhCCCcHHHHHHHH-HHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHH
Confidence            36777888888888899999999998742 2222211 1       11 11122211    1111 22489999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 029199           75 KMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDS  154 (197)
Q Consensus        75 ~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~  154 (197)
                      ++++..|++...|..+|.++-. +++.+.|...|..-++.-|..+..|..++.+--..++ .-+|...++++.-.+|.|.
T Consensus       676 e~lk~fp~f~Kl~lmlGQi~e~-~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~-~~rAR~ildrarlkNPk~~  753 (913)
T KOG0495|consen  676 EALKSFPDFHKLWLMLGQIEEQ-MENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQ-LVRARSILDRARLKNPKNA  753 (913)
T ss_pred             HHHHhCCchHHHHHHHhHHHHH-HHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcc-hhhHHHHHHHHHhcCCCcc
Confidence            9999999999999999988777 9999999999999999999999999999999888775 8899999999999999999


Q ss_pred             HHHHHHHHHHHHcCCccccc----cCCCccc
Q 029199          155 HVHASYAGFLWETEEDNDEC----DAPSELD  181 (197)
Q Consensus       155 ~~~~~la~~~~~~g~~~ea~----~~~~~~~  181 (197)
                      ..|.....+-.+.|..++|.    +.+|++|
T Consensus       754 ~lwle~Ir~ElR~gn~~~a~~lmakALQecp  784 (913)
T KOG0495|consen  754 LLWLESIRMELRAGNKEQAELLMAKALQECP  784 (913)
T ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            99999999999999999985    4444444

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.78  E-value=1.8e-07  Score=74.64  Aligned_cols=119  Identities=16%  Similarity=0.146  Sum_probs=95.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHc-
Q 029199           61 GSGGDSQGVEEYYKKMVEENPGNPLFL---SNYAQFLYQSKQDLPKAEEYYSRAILADPGDG---EILSQYAKLVWELH-  133 (197)
Q Consensus        61 ~~~g~~~~A~~~~~~al~~~P~~~~~~---~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~---~~~~~lg~~l~~~~-  133 (197)
                      ...|++++|++.|++++...|..+.+.   +.+|.+++. .+++++|+..|++.++++|+++   .+++.+|.+...++ 
T Consensus        43 ~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~-~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~  121 (243)
T PRK10866         43 LQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYK-NADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDD  121 (243)
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcch
Confidence            446999999999999999999997765   789988888 9999999999999999998776   56788887654332 


Q ss_pred             -------------CC---HHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHcCCccccccCCCcc
Q 029199          134 -------------ND---QDRAATYYERAVHASPEDSHVH-----------------ASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       134 -------------~~---~~~A~~~~~~al~~~p~~~~~~-----------------~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                                   +|   ..+|+..|++.++..|+...+-                 +..|..|.+.|++..|..-++.+
T Consensus       122 ~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v  201 (243)
T PRK10866        122 SALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQM  201 (243)
T ss_pred             hhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHH
Confidence                         12   3478899999999999866432                 45677899999998876555554

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.77  E-value=1.4e-08  Score=82.96  Aligned_cols=116  Identities=15%  Similarity=0.035  Sum_probs=90.2

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 029199           63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQ--DLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAA  140 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g--~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~  140 (197)
                      .++.+.|.+.++..-+.+.+..-+...-+.+... .|  ++++|...|+......|.++.+++.++.+...+|+ +++|.
T Consensus       144 ~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~-~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~-~~eAe  221 (290)
T PF04733_consen  144 MNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLA-TGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGH-YEEAE  221 (290)
T ss_dssp             TT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHH-HTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT--HHHHH
T ss_pred             cCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH-hCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCC-HHHHH
Confidence            5999999999999888877655444433433333 34  68999999999888888999999999999999885 99999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCccc-cccCCCcc
Q 029199          141 TYYERAVHASPEDSHVHASYAGFLWETEEDND-ECDAPSEL  180 (197)
Q Consensus       141 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~e-a~~~~~~~  180 (197)
                      +.+++++..+|++++++.|++.+...+|+..+ ..+.+.++
T Consensus       222 ~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL  262 (290)
T PF04733_consen  222 ELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQL  262 (290)
T ss_dssp             HHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence            99999999999999999999999999999855 44455544

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.77  E-value=7.4e-08  Score=72.85  Aligned_cols=153  Identities=14%  Similarity=0.095  Sum_probs=121.2

Q ss_pred             CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHH-hCC
Q 029199            3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVE-ENP   81 (197)
Q Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~-~~P   81 (197)
                      |++++++..++-++.+.....+..|.... .+..|..+..+                    |++.+|...|++++. +.-
T Consensus        63 ~~a~~q~ldP~R~~Rea~~~~~~ApTvqn-r~rLa~al~el--------------------Gr~~EA~~hy~qalsG~fA  121 (251)
T COG4700          63 LMALQQKLDPERHLREATEELAIAPTVQN-RYRLANALAEL--------------------GRYHEAVPHYQQALSGIFA  121 (251)
T ss_pred             HHHHHHhcChhHHHHHHHHHHhhchhHHH-HHHHHHHHHHh--------------------hhhhhhHHHHHHHhccccC
Confidence            34555555555555555554455554432 34455556554                    999999999999875 678


Q ss_pred             CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 029199           82 GNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADP--GDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHAS  159 (197)
Q Consensus        82 ~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P--~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  159 (197)
                      +++..+..++...+. .+++..|...+++..+.+|  ..|+.+..+|..|...|+ +.+|...|+.++...|+ +.+...
T Consensus       122 ~d~a~lLglA~Aqfa-~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~-~a~Aesafe~a~~~ypg-~~ar~~  198 (251)
T COG4700         122 HDAAMLLGLAQAQFA-IQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGK-YADAESAFEVAISYYPG-PQARIY  198 (251)
T ss_pred             CCHHHHHHHHHHHHh-hccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCC-chhHHHHHHHHHHhCCC-HHHHHH
Confidence            899999999999998 9999999999999999988  577888889999999886 88999999999999986 788889


Q ss_pred             HHHHHHHcCCccccccCCCc
Q 029199          160 YAGFLWETEEDNDECDAPSE  179 (197)
Q Consensus       160 la~~~~~~g~~~ea~~~~~~  179 (197)
                      ++..+.++|+.+|+..-+..
T Consensus       199 Y~e~La~qgr~~ea~aq~~~  218 (251)
T COG4700         199 YAEMLAKQGRLREANAQYVA  218 (251)
T ss_pred             HHHHHHHhcchhHHHHHHHH
Confidence            99999999999987544433

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.76  E-value=1.8e-07  Score=74.64  Aligned_cols=151  Identities=10%  Similarity=-0.006  Sum_probs=118.6

Q ss_pred             hhHHHHHHHHhhhcCcccccCCCChhhH---HhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCC
Q 029199            6 LSEEVKVMEALWNAGFEQERGTVGQEMY---LAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPG   82 (197)
Q Consensus         6 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~   82 (197)
                      +-+.|++.+|+..|...+...|.++...   +..|...-.                    .+++++|+..|++.++.+|+
T Consensus        42 ~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~--------------------~~~y~~A~~~~e~fi~~~P~  101 (243)
T PRK10866         42 KLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYK--------------------NADLPLAQAAIDRFIRLNPT  101 (243)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHh--------------------cCCHHHHHHHHHHHHHhCcC
Confidence            3456889999999999999999987655   555655555                    49999999999999999998


Q ss_pred             CH---HHHHHHHHHHHHhcC------------------CHHHHHHHHHHHHHhCCCCHHHH-----------------HH
Q 029199           83 NP---LFLSNYAQFLYQSKQ------------------DLPKAEEYYSRAILADPGDGEIL-----------------SQ  124 (197)
Q Consensus        83 ~~---~~~~~la~~l~~~~g------------------~~~~A~~~~~~al~l~P~~~~~~-----------------~~  124 (197)
                      ++   .+++.+|.+.+. .+                  ...+|+..|++.++..|++..+.                 +.
T Consensus       102 ~~~~~~a~Y~~g~~~~~-~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~  180 (243)
T PRK10866        102 HPNIDYVLYMRGLTNMA-LDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELS  180 (243)
T ss_pred             CCchHHHHHHHHHhhhh-cchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHH
Confidence            84   467777855322 22                  13578899999999999987442                 23


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCccccccCCC
Q 029199          125 YAKLVWELHNDQDRAATYYERAVHASPE---DSHVHASYAGFLWETEEDNDECDAPS  178 (197)
Q Consensus       125 lg~~l~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~ea~~~~~  178 (197)
                      .|..|++.+. +.-|+.-++..++..|+   .+++++.++..+..+|..+++.+..+
T Consensus       181 ia~~Y~~~~~-y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~  236 (243)
T PRK10866        181 VAEYYTKRGA-YVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAK  236 (243)
T ss_pred             HHHHHHHcCc-hHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            4566888775 89999999999999876   55788999999999999999866544

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.74  E-value=6.3e-08  Score=71.02  Aligned_cols=82  Identities=20%  Similarity=0.231  Sum_probs=71.9

Q ss_pred             CCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 029199           63 GGDSQGVEEYYKKMVEENPGN---PLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRA  139 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~P~~---~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A  139 (197)
                      .|++++|+..|++++...|+.   +.+...++.++.. .|++++|+..++. +.-.+-.+.++..+|.++...| ++++|
T Consensus        61 ~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~-~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g-~~~~A  137 (145)
T PF09976_consen   61 QGDYDEAKAALEKALANAPDPELKPLARLRLARILLQ-QGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQG-DYDEA  137 (145)
T ss_pred             CCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCC-CHHHH
Confidence            499999999999999988776   4578889988887 9999999999977 4556778889999999999988 59999


Q ss_pred             HHHHHHHH
Q 029199          140 ATYYERAV  147 (197)
Q Consensus       140 ~~~~~~al  147 (197)
                      +..|++||
T Consensus       138 ~~~y~~Al  145 (145)
T PF09976_consen  138 RAAYQKAL  145 (145)
T ss_pred             HHHHHHhC
Confidence            99999985

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.73  E-value=2e-08  Score=82.04  Aligned_cols=131  Identities=18%  Similarity=0.151  Sum_probs=100.4

Q ss_pred             HHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 029199            8 EEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFL   87 (197)
Q Consensus         8 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~   87 (197)
                      .++|+..|...|..+.+.+.++.-..++.++.--..|                  +.++.+|...|++.....|.++..+
T Consensus       143 ~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g------------------~e~~~~A~y~f~El~~~~~~t~~~l  204 (290)
T PF04733_consen  143 KMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATG------------------GEKYQDAFYIFEELSDKFGSTPKLL  204 (290)
T ss_dssp             HTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHT------------------TTCCCHHHHHHHHHHCCS--SHHHH
T ss_pred             HcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhC------------------chhHHHHHHHHHHHHhccCCCHHHH
Confidence            4567777777777777777666666666665432222                  1578999999999888888999999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 029199           88 SNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVH  157 (197)
Q Consensus        88 ~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~  157 (197)
                      +.++.+... +|++++|+..+++++..+|++++++.|+..+...+|+..+.+.+++.+....+|+++-+.
T Consensus       205 ng~A~~~l~-~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~  273 (290)
T PF04733_consen  205 NGLAVCHLQ-LGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVK  273 (290)
T ss_dssp             HHHHHHHHH-CT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHH
T ss_pred             HHHHHHHHH-hCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHH
Confidence            999977666 999999999999999999999999999998888878644678889999888999988653

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.72  E-value=6.8e-08  Score=75.42  Aligned_cols=90  Identities=17%  Similarity=0.115  Sum_probs=83.2

Q ss_pred             cccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 029199           58 YPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQD  137 (197)
Q Consensus        58 ~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~  137 (197)
                      ..|.....|+.|+.+|.++|.++|..+..|.|.+.++++ ..+++......+++++++|+....++.+|.++.+..+ ++
T Consensus        18 nk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk-~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~-~~   95 (284)
T KOG4642|consen   18 NKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLK-LKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKG-YD   95 (284)
T ss_pred             ccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHH-hhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcc-cc
Confidence            445556889999999999999999999999999988887 9999999999999999999999999999999999887 89


Q ss_pred             HHHHHHHHHHHh
Q 029199          138 RAATYYERAVHA  149 (197)
Q Consensus       138 ~A~~~~~~al~~  149 (197)
                      +|+.++.+|..+
T Consensus        96 eaI~~Lqra~sl  107 (284)
T KOG4642|consen   96 EAIKVLQRAYSL  107 (284)
T ss_pred             HHHHHHHHHHHH
Confidence            999999999655

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.72  E-value=5.9e-08  Score=81.08  Aligned_cols=155  Identities=12%  Similarity=0.050  Sum_probs=106.4

Q ss_pred             CCcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCC
Q 029199            2 AGTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENP   81 (197)
Q Consensus         2 ~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P   81 (197)
                      .|.++=++.++.-|+.--.+.+..+|.+-+.++-+|-.+-..                    |+.++|+=.|+.|..+.|
T Consensus       306 ~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~--------------------~R~~~A~IaFR~Aq~Lap  365 (564)
T KOG1174|consen  306 HAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIAL--------------------ERHTQAVIAFRTAQMLAP  365 (564)
T ss_pred             hhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhc--------------------cchHHHHHHHHHHHhcch
Confidence            456667778888888888888889999999999999887764                    555666666666666666


Q ss_pred             CCHHHHHHHHHHHHHhcC------------------------------------CHHHHHHHHHHHHHhCCCCHHHHHHH
Q 029199           82 GNPLFLSNYAQFLYQSKQ------------------------------------DLPKAEEYYSRAILADPGDGEILSQY  125 (197)
Q Consensus        82 ~~~~~~~~la~~l~~~~g------------------------------------~~~~A~~~~~~al~l~P~~~~~~~~l  125 (197)
                      ..-+.|-.|-.+|.. .|                                    -.++|.+.++++|+++|....+-..+
T Consensus       366 ~rL~~Y~GL~hsYLA-~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~  444 (564)
T KOG1174|consen  366 YRLEIYRGLFHSYLA-QKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLI  444 (564)
T ss_pred             hhHHHHHHHHHHHHh-hchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHH
Confidence            655555555544443 44                                    34556666677777777776666666


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCc
Q 029199          126 AKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSE  179 (197)
Q Consensus       126 g~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~  179 (197)
                      +.++..-|+ +++++..+++.|...|+ ...+..+|.++..++.++++.+.|+.
T Consensus       445 AEL~~~Eg~-~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~  496 (564)
T KOG1174|consen  445 AELCQVEGP-TKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYK  496 (564)
T ss_pred             HHHHHhhCc-cchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            666555454 66777777777776664 55667777777777777777766665

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.69  E-value=3.1e-08  Score=89.88  Aligned_cols=81  Identities=16%  Similarity=0.076  Sum_probs=58.6

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCC
Q 029199           98 KQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAP  177 (197)
Q Consensus        98 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~  177 (197)
                      .+++.+|+..|+.+++.+|+|...|..+|.+|...|+ +.-|++.|.+|..++|++....+..+.+...+|++.++++.+
T Consensus       575 a~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGr-y~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l  653 (1238)
T KOG1127|consen  575 AHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGR-YSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDAL  653 (1238)
T ss_pred             ccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCc-eehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            4466777777777777777777777777777777776 677777777777777777777777777777777777776555


Q ss_pred             Cc
Q 029199          178 SE  179 (197)
Q Consensus       178 ~~  179 (197)
                      +.
T Consensus       654 ~~  655 (1238)
T KOG1127|consen  654 GL  655 (1238)
T ss_pred             HH
Confidence            54

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.69  E-value=6.3e-08  Score=85.49  Aligned_cols=136  Identities=14%  Similarity=0.091  Sum_probs=117.7

Q ss_pred             HHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 029199            9 EVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLS   88 (197)
Q Consensus         9 ~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~   88 (197)
                      -.+|.++...|....+.+|-....|+..|-..-.|                    +++..|.++|..++.++|++.++|+
T Consensus       498 ~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALql--------------------ek~q~av~aF~rcvtL~Pd~~eaWn  557 (777)
T KOG1128|consen  498 NKDFSEADKHLERSLEINPLQLGTWFGLGCAALQL--------------------EKEQAAVKAFHRCVTLEPDNAEAWN  557 (777)
T ss_pred             chhHHHHHHHHHHHhhcCccchhHHHhccHHHHHH--------------------hhhHHHHHHHHHHhhcCCCchhhhh
Confidence            36788888888888899999999999998776665                    8999999999999999999999999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHH
Q 029199           89 NYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHAS--PEDSHVHASYAGFLWE  166 (197)
Q Consensus        89 ~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~  166 (197)
                      |++..+.+ .++-.+|...+.+|++.+-++..+|-|+-.+....|. +++|++.|.+.+.+.  ..++.+...+.....+
T Consensus       558 Nls~ayi~-~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge-~eda~~A~~rll~~~~~~~d~~vl~~iv~~~~~  635 (777)
T KOG1128|consen  558 NLSTAYIR-LKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGE-FEDAIKAYHRLLDLRKKYKDDEVLLIIVRTVLE  635 (777)
T ss_pred             hhhHHHHH-HhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhccc-HHHHHHHHHHHHHhhhhcccchhhHHHHHHHHh
Confidence            99977776 9999999999999999999999999999999999995 999999999998764  3355555555544443

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.68  E-value=2.9e-08  Score=64.81  Aligned_cols=67  Identities=21%  Similarity=0.407  Sum_probs=55.2

Q ss_pred             CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 029199           81 PGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILAD-------PGDGEILSQYAKLVWELHNDQDRAATYYERAVHA  149 (197)
Q Consensus        81 P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~-------P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~  149 (197)
                      |+-..++.++|.+++. +|++++|+++|++++++.       |.-+.++.++|.++...|+ +++|++++++++++
T Consensus         2 ~~~a~~~~~la~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~-~~~A~~~~~~al~i   75 (78)
T PF13424_consen    2 PDTANAYNNLARVYRE-LGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGD-YEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTH-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhh
Confidence            4456788999988887 999999999999999762       2235688999999999885 99999999999986

...

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.66  E-value=2.7e-08  Score=76.86  Aligned_cols=159  Identities=12%  Similarity=0.060  Sum_probs=111.0

Q ss_pred             ChhhHHhhhcccCCCCCCCCCCC-CCCCCCcccCCCCCHHHHHHHHHHHHHhC---C-CCHHHHHHHHHHHHHhcCCHHH
Q 029199           29 GQEMYLAKGLGVGGRGGRGGGTG-GGGSGFYPAGSGGDSQGVEEYYKKMVEEN---P-GNPLFLSNYAQFLYQSKQDLPK  103 (197)
Q Consensus        29 ~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~A~~~~~~al~~~---P-~~~~~~~~la~~l~~~~g~~~~  103 (197)
                      .+.+.+..-+.+.+|....++.- .+...-+...-.=+.+--+.-+.+.+...   | .-+..++.+| ++|...|-+.-
T Consensus         5 ~~~~~~~~~~~LagC~~~~~~~~~k~~~~~~~~qp~lqqEV~iarlsqlL~~~~l~~eeRA~l~fERG-vlYDSlGL~~L   83 (297)
T COG4785           5 LRWCFVATALTLAGCSNQNETFWRKSEVLAVPLQPTLQQEVILARMSQILASRALTDEERAQLLFERG-VLYDSLGLRAL   83 (297)
T ss_pred             HHHHHHHHHHHHHhhccccCceecccceeeccCCccHHHHHHHHHHHHHHHhccCChHHHHHHHHHhc-chhhhhhHHHH
Confidence            34555666666777754222110 11111111111112233444455554432   2 2355788899 66666999999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc-cc
Q 029199          104 AEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL-DS  182 (197)
Q Consensus       104 A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~-~~  182 (197)
                      |+-.|.+++.+.|+-|++.+.+|..+...| +++.|.+.|...+++||.+..++.|+|..+.-.||+.-|.+++.+. .+
T Consensus        84 AR~DftQaLai~P~m~~vfNyLG~Yl~~a~-~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~  162 (297)
T COG4785          84 ARNDFSQALAIRPDMPEVFNYLGIYLTQAG-NFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD  162 (297)
T ss_pred             HhhhhhhhhhcCCCcHHHHHHHHHHHHhcc-cchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhc
Confidence            999999999999999999999998777766 6999999999999999999999999999999999999998777664 33


Q ss_pred             cccchhh
Q 029199          183 NTLQIGH  189 (197)
Q Consensus       183 ~~~~~~~  189 (197)
                      .+.+|++
T Consensus       163 D~~DPfR  169 (297)
T COG4785         163 DPNDPFR  169 (297)
T ss_pred             CCCChHH
Confidence            3444544

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.64  E-value=2.1e-07  Score=72.16  Aligned_cols=117  Identities=16%  Similarity=0.193  Sum_probs=91.6

Q ss_pred             CCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcCC-
Q 029199           63 GGDSQGVEEYYKKMVEENPGN---PLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDG---EILSQYAKLVWELHND-  135 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~P~~---~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~---~~~~~lg~~l~~~~~~-  135 (197)
                      .|++.+|++.|++++...|..   +.+.+.+|..++. .|++++|+..|++.++..|+++   .+++.+|.+++..... 
T Consensus        18 ~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~-~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~   96 (203)
T PF13525_consen   18 QGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYK-QGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGI   96 (203)
T ss_dssp             CT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccc
Confidence            599999999999999998886   6688899989898 9999999999999999999877   5788889887665321 


Q ss_pred             ---------HHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHcCCccccccCCCcc
Q 029199          136 ---------QDRAATYYERAVHASPEDSHVH-----------------ASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       136 ---------~~~A~~~~~~al~~~p~~~~~~-----------------~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                               ..+|+..|+..++..|+.+.+-                 +..|..|.+.|++..|..-++.+
T Consensus        97 ~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v  167 (203)
T PF13525_consen   97 LRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYV  167 (203)
T ss_dssp             H-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHH
T ss_pred             hhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence                     3589999999999999876442                 46688899999999987666554

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.64  E-value=6.5e-07  Score=64.05  Aligned_cols=87  Identities=23%  Similarity=0.210  Sum_probs=62.7

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHcCCHHH
Q 029199           63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDG----EILSQYAKLVWELHNDQDR  138 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~----~~~~~lg~~l~~~~~~~~~  138 (197)
                      .|+++.|++.|.+++.+-|..+.+|+|.+..+.. +|+.++|++.+++++++..+..    .++...|.+|...|+ -++
T Consensus        56 ~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RL-q~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~-dd~  133 (175)
T KOG4555|consen   56 AGDLDGALELFGQALCLAPERASAYNNRAQALRL-QGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN-DDA  133 (175)
T ss_pred             ccchHHHHHHHHHHHHhcccchHhhccHHHHHHH-cCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc-hHH
Confidence            4777888888888888888888888888877766 7888888888888887754333    345667777777665 477


Q ss_pred             HHHHHHHHHHhCC
Q 029199          139 AATYYERAVHASP  151 (197)
Q Consensus       139 A~~~~~~al~~~p  151 (197)
                      |..-|+.+-++-+
T Consensus       134 AR~DFe~AA~LGS  146 (175)
T KOG4555|consen  134 ARADFEAAAQLGS  146 (175)
T ss_pred             HHHhHHHHHHhCC
Confidence            7777777666544

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.63  E-value=4.3e-07  Score=76.95  Aligned_cols=116  Identities=22%  Similarity=0.151  Sum_probs=96.9

Q ss_pred             hhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHH
Q 029199            6 LSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPL   85 (197)
Q Consensus         6 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~   85 (197)
                      +...+++..|+..|....+.+|... +++++-..  .                    .++-.+|++.++++++.+|++..
T Consensus       179 l~~t~~~~~ai~lle~L~~~~pev~-~~LA~v~l--~--------------------~~~E~~AI~ll~~aL~~~p~d~~  235 (395)
T PF09295_consen  179 LSLTQRYDEAIELLEKLRERDPEVA-VLLARVYL--L--------------------MNEEVEAIRLLNEALKENPQDSE  235 (395)
T ss_pred             HhhcccHHHHHHHHHHHHhcCCcHH-HHHHHHHH--h--------------------cCcHHHHHHHHHHHHHhCCCCHH
Confidence            3445678889999988888887633 22332221  1                    26778999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 029199           86 FLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERA  146 (197)
Q Consensus        86 ~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~a  146 (197)
                      .+...+.++.. .++++.|+.+.++++.+.|++...|+.++.+|..+| ++++|+..+..+
T Consensus       236 LL~~Qa~fLl~-k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~-d~e~ALlaLNs~  294 (395)
T PF09295_consen  236 LLNLQAEFLLS-KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLG-DFENALLALNSC  294 (395)
T ss_pred             HHHHHHHHHHh-cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcC-CHHHHHHHHhcC
Confidence            99999989888 999999999999999999999999999999999988 599999877654

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.62  E-value=2e-07  Score=75.76  Aligned_cols=168  Identities=15%  Similarity=0.036  Sum_probs=112.5

Q ss_pred             HHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCC-------CCCCCCCCC--------------------------
Q 029199           11 KVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGG-------GTGGGGSGF--------------------------   57 (197)
Q Consensus        11 ~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~-------~~~~~~~~~--------------------------   57 (197)
                      +..+|+..|-.+.+.+|..-+.+++.|--+...|-.+.       .-.+|+...                          
T Consensus        50 Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~  129 (389)
T COG2956          50 QPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDI  129 (389)
T ss_pred             CcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence            34567777777777778777888877766655543111       001122110                          


Q ss_pred             -------------------cccCCCCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 029199           58 -------------------YPAGSGGDSQGVEEYYKKMVEENPGN-----PLFLSNYAQFLYQSKQDLPKAEEYYSRAIL  113 (197)
Q Consensus        58 -------------------~~~~~~g~~~~A~~~~~~al~~~P~~-----~~~~~~la~~l~~~~g~~~~A~~~~~~al~  113 (197)
                                         ..+....++++|+..-++..++.|+.     +..+..|+..... ..+.++|+..+.+|++
T Consensus       130 f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~-~~~~d~A~~~l~kAlq  208 (389)
T COG2956         130 FNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALA-SSDVDRARELLKKALQ  208 (389)
T ss_pred             HHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHh
Confidence                               13344467777777777777777665     3345566655554 6778888888888888


Q ss_pred             hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          114 ADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPED-SHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       114 l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      -||+..-+-..+|.+....| ++++|++.++++++.||+. +++.-.+-.||.++|+.++....+.+.
T Consensus       209 a~~~cvRAsi~lG~v~~~~g-~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~  275 (389)
T COG2956         209 ADKKCVRASIILGRVELAKG-DYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRA  275 (389)
T ss_pred             hCccceehhhhhhHHHHhcc-chHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            88888888888888877766 4788888888888888774 456777788888888888876666554

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.60  E-value=1.4e-07  Score=54.98  Aligned_cols=41  Identities=24%  Similarity=0.197  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 029199           85 LFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYA  126 (197)
Q Consensus        85 ~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg  126 (197)
                      .+|..+|.++.. .|++++|++.|+++++.+|+|+.+|..+|
T Consensus         2 ~~~~~la~~~~~-~G~~~~A~~~~~~~l~~~P~~~~a~~~La   42 (44)
T PF13428_consen    2 AAWLALARAYRR-LGQPDEAERLLRRALALDPDDPEAWRALA   42 (44)
T ss_pred             HHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence            345556655554 66666666666666666666666665555

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.59  E-value=2.8e-07  Score=71.51  Aligned_cols=149  Identities=14%  Similarity=0.106  Sum_probs=112.3

Q ss_pred             cchhHHHHHHHHhhhcCcccccCCCCh---hhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhC
Q 029199            4 TALSEEVKVMEALWNAGFEQERGTVGQ---EMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEEN   80 (197)
Q Consensus         4 ~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~   80 (197)
                      ..+=+.|++.+|+..|...+...|.++   ...+..|.+...                    .|+++.|+..|++-++..
T Consensus        13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~--------------------~~~y~~A~~~~~~fi~~y   72 (203)
T PF13525_consen   13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYK--------------------QGDYEEAIAAYERFIKLY   72 (203)
T ss_dssp             HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH--------------------TT-HHHHHHHHHHHHHH-
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHHHC
Confidence            344567899999999999999999875   556666666655                    499999999999999999


Q ss_pred             CCCH---HHHHHHHHHHHHh----------cCCHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHH
Q 029199           81 PGNP---LFLSNYAQFLYQS----------KQDLPKAEEYYSRAILADPGDGEIL-----------------SQYAKLVW  130 (197)
Q Consensus        81 P~~~---~~~~~la~~l~~~----------~g~~~~A~~~~~~al~l~P~~~~~~-----------------~~lg~~l~  130 (197)
                      |+++   .+++.+|.+.+..          .+...+|+..|+..++..|+++.+.                 +..|..|+
T Consensus        73 P~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~  152 (203)
T PF13525_consen   73 PNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYY  152 (203)
T ss_dssp             TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9985   4778888666542          1234689999999999999987552                 23467788


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCcccc
Q 029199          131 ELHNDQDRAATYYERAVHASPEDS---HVHASYAGFLWETEEDNDE  173 (197)
Q Consensus       131 ~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~ea  173 (197)
                      ..+. +..|+..++.+++..|+.+   +++..++..+.++|..+.+
T Consensus       153 ~~~~-y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a  197 (203)
T PF13525_consen  153 KRGK-YKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA  197 (203)
T ss_dssp             CTT--HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred             Hccc-HHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence            8775 9999999999999999866   5688899999999988754

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.59  E-value=1.2e-07  Score=77.02  Aligned_cols=113  Identities=13%  Similarity=0.129  Sum_probs=84.1

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHHcCCHHHHH
Q 029199           66 SQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDG-----EILSQYAKLVWELHNDQDRAA  140 (197)
Q Consensus        66 ~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~-----~~~~~lg~~l~~~~~~~~~A~  140 (197)
                      ++.|...|........--..+.-.|..+|.. ..++++|++.-++.+++.|+.-     ..++.++..+.... +.++|.
T Consensus       123 ~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~-treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~-~~d~A~  200 (389)
T COG2956         123 LDRAEDIFNQLVDEGEFAEGALQQLLNIYQA-TREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASS-DVDRAR  200 (389)
T ss_pred             hhHHHHHHHHHhcchhhhHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhh-hHHHHH
Confidence            3333444443333322234456666644444 7899999999999999987654     34556666655645 589999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          141 TYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       141 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      ..+.+|++.+|+...+-..+|.+....|+++.|++.++++
T Consensus       201 ~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v  240 (389)
T COG2956         201 ELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERV  240 (389)
T ss_pred             HHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHH
Confidence            9999999999999999999999999999999999888875

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=98.55  E-value=7.3e-07  Score=74.05  Aligned_cols=110  Identities=17%  Similarity=0.126  Sum_probs=95.0

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 029199           64 GDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYY  143 (197)
Q Consensus        64 g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~  143 (197)
                      |++++|.+..+++++..-+.. ....++ .+  +-++..+=++..++.++..|++|..+..+|.++++.+ .|.+|.++|
T Consensus       277 ~~~~~A~~~i~~~Lk~~~D~~-L~~~~~-~l--~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~-~w~kA~~~l  351 (400)
T COG3071         277 GDHDEAQEIIEDALKRQWDPR-LCRLIP-RL--RPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNK-LWGKASEAL  351 (400)
T ss_pred             CChHHHHHHHHHHHHhccChh-HHHHHh-hc--CCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhh-HHHHHHHHH
Confidence            999999999999999876544 333333 32  2589999999999999999999999999999999977 599999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCc
Q 029199          144 ERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSE  179 (197)
Q Consensus       144 ~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~  179 (197)
                      +.|++..|+ ...+..+|.++.++|+..+|.+.++.
T Consensus       352 eaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e  386 (400)
T COG3071         352 EAALKLRPS-ASDYAELADALDQLGEPEEAEQVRRE  386 (400)
T ss_pred             HHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHH
Confidence            999999986 77889999999999999999877766

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.54  E-value=8.9e-08  Score=52.66  Aligned_cols=32  Identities=28%  Similarity=0.431  Sum_probs=16.5

Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 029199          108 YSRAILADPGDGEILSQYAKLVWELHNDQDRAA  140 (197)
Q Consensus       108 ~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~  140 (197)
                      |++||+++|+|+.+|+++|.+|...| ++++|+
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g-~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQG-DYEEAI   33 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCc-CHHhhc
Confidence            45555555555555555555555544 245443

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.53  E-value=1.5e-07  Score=77.16  Aligned_cols=106  Identities=12%  Similarity=-0.015  Sum_probs=96.7

Q ss_pred             CCcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCC
Q 029199            2 AGTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENP   81 (197)
Q Consensus         2 ~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P   81 (197)
                      +|+-|=..|++.|||.+|+.++..+|.+|-.+..+.+++-++                    ..+..|....+.|+.+|-
T Consensus       103 ~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~--------------------K~FA~AE~DC~~AiaLd~  162 (536)
T KOG4648|consen  103 RGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQ--------------------KSFAQAEEDCEAAIALDK  162 (536)
T ss_pred             hhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHH--------------------HHHHHHHHhHHHHHHhhH
Confidence            588888899999999999999999999999999999998875                    889999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 029199           82 GNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKL  128 (197)
Q Consensus        82 ~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~  128 (197)
                      ....+|..++..-.. +|+..+|.+.++.+|++.|++.+..-.++.+
T Consensus       163 ~Y~KAYSRR~~AR~~-Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i  208 (536)
T KOG4648|consen  163 LYVKAYSRRMQARES-LGNNMEAKKDCETVLALEPKNIELKKSLARI  208 (536)
T ss_pred             HHHHHHHHHHHHHHH-HhhHHHHHHhHHHHHhhCcccHHHHHHHHHh
Confidence            999999999966666 9999999999999999999988877666644

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.53  E-value=2.4e-07  Score=53.92  Aligned_cols=43  Identities=21%  Similarity=0.245  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 029199          119 GEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAG  162 (197)
Q Consensus       119 ~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  162 (197)
                      |.++..+|.+|...|+ +++|+++|+++++.+|+|+.+|..+|.
T Consensus         1 p~~~~~la~~~~~~G~-~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    1 PAAWLALARAYRRLGQ-PDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             CHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            4688999999999885 999999999999999999999999885

>PLN03218 maturation of RBCL 1; Provisional

Probab=98.53  E-value=1.1e-06  Score=83.02  Aligned_cols=115  Identities=20%  Similarity=0.154  Sum_probs=68.3

Q ss_pred             CCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHcCCHHH
Q 029199           62 SGGDSQGVEEYYKKMVEE--NPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILAD-PGDGEILSQYAKLVWELHNDQDR  138 (197)
Q Consensus        62 ~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~l~~~~~~~~~  138 (197)
                      +.|++++|++.|++..+.  .|+ ...|..+...+.. .|++++|.+.++++.+.. +.+...+..+...|.+.|+ +++
T Consensus       626 k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k-~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~-~ee  702 (1060)
T PLN03218        626 QKGDWDFALSIYDDMKKKGVKPD-EVFFSALVDVAGH-AGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKN-WKK  702 (1060)
T ss_pred             hcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHh-CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC-HHH
Confidence            346666666666666554  343 3444555545454 666666666666666543 3345556666666666553 666


Q ss_pred             HHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          139 AATYYERAVHA--SPEDSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       139 A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      |.+.|++....  .| +...|..+...|.+.|+.++|.+.|+++
T Consensus       703 A~~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM  745 (1060)
T PLN03218        703 ALELYEDIKSIKLRP-TVSTMNALITALCEGNQLPKALEVLSEM  745 (1060)
T ss_pred             HHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            66666666443  23 3556666666666666666666666654

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.51  E-value=4.5e-06  Score=60.74  Aligned_cols=93  Identities=16%  Similarity=0.137  Sum_probs=74.0

Q ss_pred             CCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcC--
Q 029199           63 GGDSQGVEEYYKKMVEENPGN---PLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDG---EILSQYAKLVWELHN--  134 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~P~~---~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~---~~~~~lg~~l~~~~~--  134 (197)
                      .|+|.+|++.|+.+....|-.   ..+...++..++. .+++++|+..+++-++++|.++   .+++..|.+.+.+..  
T Consensus        23 ~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~-~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~  101 (142)
T PF13512_consen   23 KGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYK-QGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGS  101 (142)
T ss_pred             hCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhH
Confidence            489999999999998888775   5577788888887 8999999999999999998877   467777877777541  


Q ss_pred             ------------CHHHHHHHHHHHHHhCCCCHHH
Q 029199          135 ------------DQDRAATYYERAVHASPEDSHV  156 (197)
Q Consensus       135 ------------~~~~A~~~~~~al~~~p~~~~~  156 (197)
                                  ...+|...|++.++..|+...+
T Consensus       102 ~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya  135 (142)
T PF13512_consen  102 LQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA  135 (142)
T ss_pred             HhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence                        1567888888888888887654

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.50  E-value=6.5e-07  Score=71.31  Aligned_cols=92  Identities=20%  Similarity=0.248  Sum_probs=67.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHH
Q 029199           87 LSNYAQFLYQSKQDLPKAEEYYSRAILADPGDG---EILSQYAKLVWELHNDQDRAATYYERAVHASPE---DSHVHASY  160 (197)
Q Consensus        87 ~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~---~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l  160 (197)
                      .++.+.-++. .|+|..|+..|..-++..|+++   .+++.||.+++.+| ++++|...|..+++-.|+   -|+.++.+
T Consensus       144 ~Y~~A~~~~k-sgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg-~y~~Aa~~f~~~~k~~P~s~KApdallKl  221 (262)
T COG1729         144 LYNAALDLYK-SGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQG-DYEDAAYIFARVVKDYPKSPKAPDALLKL  221 (262)
T ss_pred             HHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcc-cchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence            4555545555 7778888888888888877654   67777888888866 478888888888777654   45678888


Q ss_pred             HHHHHHcCCccccccCCCcc
Q 029199          161 AGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       161 a~~~~~~g~~~ea~~~~~~~  180 (197)
                      |.++.++|+.++||..++++
T Consensus       222 g~~~~~l~~~d~A~atl~qv  241 (262)
T COG1729         222 GVSLGRLGNTDEACATLQQV  241 (262)
T ss_pred             HHHHHHhcCHHHHHHHHHHH
Confidence            88888888888887777775

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.48  E-value=5e-06  Score=66.32  Aligned_cols=98  Identities=17%  Similarity=0.267  Sum_probs=87.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcC
Q 029199           61 GSGGDSQGVEEYYKKMVEENPGN---PLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGD---GEILSQYAKLVWELHN  134 (197)
Q Consensus        61 ~~~g~~~~A~~~~~~al~~~P~~---~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~---~~~~~~lg~~l~~~~~  134 (197)
                      ...|+|..|.+.|..=++..|++   +.+++=||.++|. +|+++.|...|..+++-.|++   |++++.+|.++..+++
T Consensus       152 ~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~-qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~  230 (262)
T COG1729         152 YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYA-QGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGN  230 (262)
T ss_pred             HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHh-cccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC
Confidence            34599999999999999999997   6678889999998 999999999999999987755   5889999999999996


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHH
Q 029199          135 DQDRAATYYERAVHASPEDSHVHASY  160 (197)
Q Consensus       135 ~~~~A~~~~~~al~~~p~~~~~~~~l  160 (197)
                       .++|...|++.++..|+.+.+....
T Consensus       231 -~d~A~atl~qv~k~YP~t~aA~~Ak  255 (262)
T COG1729         231 -TDEACATLQQVIKRYPGTDAAKLAK  255 (262)
T ss_pred             -HHHHHHHHHHHHHHCCCCHHHHHHH
Confidence             8999999999999999988775543

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.48  E-value=1.8e-07  Score=51.47  Aligned_cols=34  Identities=32%  Similarity=0.430  Sum_probs=30.8

Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q 029199           72 YYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEE  106 (197)
Q Consensus        72 ~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~  106 (197)
                      +|+++|+++|+++.+|++||.++.. .|++++|++
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~-~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLN-QGDYEEAIA   34 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHH-CcCHHhhcC
Confidence            4899999999999999999988887 999999863

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.47  E-value=1e-06  Score=63.07  Aligned_cols=88  Identities=14%  Similarity=0.112  Sum_probs=77.2

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHH
Q 029199           91 AQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPED----SHVHASYAGFLWE  166 (197)
Q Consensus        91 a~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~  166 (197)
                      |..+.. .|+.+.|++.|.+++.+-|.++.+++|.+..+.-.++ .++|++-+++++++..+.    ..++...|.+|..
T Consensus        50 ~valaE-~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~-~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl  127 (175)
T KOG4555|consen   50 AIALAE-AGDLDGALELFGQALCLAPERASAYNNRAQALRLQGD-DEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL  127 (175)
T ss_pred             HHHHHh-ccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCC-hHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence            534445 8999999999999999999999999999999888775 799999999999997543    3568899999999


Q ss_pred             cCCccccccCCCcc
Q 029199          167 TEEDNDECDAPSEL  180 (197)
Q Consensus       167 ~g~~~ea~~~~~~~  180 (197)
                      +|+.+.|..+|...
T Consensus       128 ~g~dd~AR~DFe~A  141 (175)
T KOG4555|consen  128 LGNDDAARADFEAA  141 (175)
T ss_pred             hCchHHHHHhHHHH
Confidence            99999999998874

>PLN03077 Protein ECB2; Provisional

Probab=98.45  E-value=8.4e-07  Score=82.47  Aligned_cols=168  Identities=9%  Similarity=0.004  Sum_probs=121.4

Q ss_pred             chhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCC----------CCCCCCCCC-----cccCCCCCHHHH
Q 029199            5 ALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGG----------GTGGGGSGF-----YPAGSGGDSQGV   69 (197)
Q Consensus         5 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~----------~~~~~~~~~-----~~~~~~g~~~~A   69 (197)
                      +|.+.|++++|...|+..    +.+...|...--++...|...+          .+..|+...     ..|...|..++|
T Consensus       533 ~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea  608 (857)
T PLN03077        533 LYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQG  608 (857)
T ss_pred             HHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHH
Confidence            455667888888888765    3455555555444444443211          234444332     245667999999


Q ss_pred             HHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 029199           70 EEYYKKMVEENPG--NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAV  147 (197)
Q Consensus        70 ~~~~~~al~~~P~--~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al  147 (197)
                      .++|+...+..+-  +...+..+...+.+ .|++++|.+.+++. ...|+ +.+|..+-..+.. +++.+.+....++++
T Consensus       609 ~~~f~~M~~~~gi~P~~~~y~~lv~~l~r-~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~-~~~~e~~e~~a~~l~  684 (857)
T PLN03077        609 LEYFHSMEEKYSITPNLKHYACVVDLLGR-AGKLTEAYNFINKM-PITPD-PAVWGALLNACRI-HRHVELGELAAQHIF  684 (857)
T ss_pred             HHHHHHHHHHhCCCCchHHHHHHHHHHHh-CCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHH-cCChHHHHHHHHHHH
Confidence            9999998854322  33566777767776 99999999999886 45665 6667776666655 556899999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          148 HASPEDSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       148 ~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      +++|+++..+..++++|...|+++++.+..+.+
T Consensus       685 ~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M  717 (857)
T PLN03077        685 ELDPNSVGYYILLCNLYADAGKWDEVARVRKTM  717 (857)
T ss_pred             hhCCCCcchHHHHHHHHHHCCChHHHHHHHHHH
Confidence            999999999999999999999999997766654

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=98.41  E-value=7.8e-07  Score=80.90  Aligned_cols=168  Identities=7%  Similarity=-0.076  Sum_probs=83.4

Q ss_pred             chhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCC----------CCCCCCCC-----CcccCCCCCHHHH
Q 029199            5 ALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGG----------GTGGGGSG-----FYPAGSGGDSQGV   69 (197)
Q Consensus         5 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~----------~~~~~~~~-----~~~~~~~g~~~~A   69 (197)
                      +|...|++.+|...|+.+.+.   +...|....-++...|...+          .+..|+..     -..|...|++++|
T Consensus       268 ~y~k~g~~~~A~~vf~~m~~~---~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a  344 (697)
T PLN03081        268 MYSKCGDIEDARCVFDGMPEK---TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHA  344 (697)
T ss_pred             HHHHCCCHHHHHHHHHhCCCC---ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHH
Confidence            466778888888888877644   44555554444444322111          11122211     1122334555555


Q ss_pred             HHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 029199           70 EEYYKKMVEEN-PGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVH  148 (197)
Q Consensus        70 ~~~~~~al~~~-P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~  148 (197)
                      .+.+...++.. +.+..+++.+...|.+ .|+.++|...|++..+   .|...|+.+...|.+.| +.++|++.|++.++
T Consensus       345 ~~i~~~m~~~g~~~d~~~~~~Li~~y~k-~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G-~~~~A~~lf~~M~~  419 (697)
T PLN03081        345 KQAHAGLIRTGFPLDIVANTALVDLYSK-WGRMEDARNVFDRMPR---KNLISWNALIAGYGNHG-RGTKAVEMFERMIA  419 (697)
T ss_pred             HHHHHHHHHhCCCCCeeehHHHHHHHHH-CCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcC-CHHHHHHHHHHHHH
Confidence            55555555543 3334444445544444 5555555555555432   23444555555555544 25555555555544


Q ss_pred             hC-CCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          149 AS-PEDSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       149 ~~-p~~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      .. ..|...+..+...+.+.|..+++...|+.+
T Consensus       420 ~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m  452 (697)
T PLN03081        420 EGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSM  452 (697)
T ss_pred             hCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence            32 113444555555555555555555555554

>PLN03218 maturation of RBCL 1; Provisional

Probab=98.41  E-value=3e-06  Score=80.08  Aligned_cols=174  Identities=15%  Similarity=0.103  Sum_probs=120.3

Q ss_pred             chhHHHHHHHHhhhcCcccccCC-CChhhHHhhhcccCCCCCCCC------------CCCCCCCCC-----cccCCCCCH
Q 029199            5 ALSEEVKVMEALWNAGFEQERGT-VGQEMYLAKGLGVGGRGGRGG------------GTGGGGSGF-----YPAGSGGDS   66 (197)
Q Consensus         5 ~~~~~~~~~~a~~~~~~~~~~~p-~~~~~~~~~g~~~~~~~~~~~------------~~~~~~~~~-----~~~~~~g~~   66 (197)
                      .|...|++.+|+..|..+.+.+. .|...|...--++...|..+.            .+..|....     ..|...|++
T Consensus       516 gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~l  595 (1060)
T PLN03218        516 GCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQV  595 (1060)
T ss_pred             HHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCH
Confidence            35566777777777777654432 223333333333333332111            112232111     134556899


Q ss_pred             HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 029199           67 QGVEEYYKKMVEEN-PGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILA--DPGDGEILSQYAKLVWELHNDQDRAATYY  143 (197)
Q Consensus        67 ~~A~~~~~~al~~~-P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~l~~~~~~~~~A~~~~  143 (197)
                      ++|.+.|++..+.+ +.+...|+.+...+.+ .|++++|+..|++..+.  .|+ ...+..+...+...| ++++|.+.+
T Consensus       596 deA~elf~~M~e~gi~p~~~tynsLI~ay~k-~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k~G-~~eeA~~l~  672 (1060)
T PLN03218        596 DRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQ-KGDWDFALSIYDDMKKKGVKPD-EVFFSALVDVAGHAG-DLDKAFEIL  672 (1060)
T ss_pred             HHHHHHHHHHHHcCCCCChHHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCC-CHHHHHHHH
Confidence            99999999998876 4466777777767666 89999999999998876  454 567777778888877 489999999


Q ss_pred             HHHHHhC-CCCHHHHHHHHHHHHHcCCccccccCCCccc
Q 029199          144 ERAVHAS-PEDSHVHASYAGFLWETEEDNDECDAPSELD  181 (197)
Q Consensus       144 ~~al~~~-p~~~~~~~~la~~~~~~g~~~ea~~~~~~~~  181 (197)
                      +...+.. +.+...+..+...|.+.|+.++|...|+++.
T Consensus       673 ~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~  711 (1060)
T PLN03218        673 QDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIK  711 (1060)
T ss_pred             HHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            9998764 4468889999999999999999998888774

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=98.40  E-value=1e-06  Score=80.12  Aligned_cols=169  Identities=12%  Similarity=0.022  Sum_probs=123.8

Q ss_pred             chhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCC----------CCCCCCCCC-----cccCCCCCHHHH
Q 029199            5 ALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGG----------GTGGGGSGF-----YPAGSGGDSQGV   69 (197)
Q Consensus         5 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~----------~~~~~~~~~-----~~~~~~g~~~~A   69 (197)
                      +|.+.|++.+|...|+.+.+.   |...|....-++...|...+          .+..|+...     ..|...|..++|
T Consensus       369 ~y~k~G~~~~A~~vf~~m~~~---d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a  445 (697)
T PLN03081        369 LYSKWGRMEDARNVFDRMPRK---NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQG  445 (697)
T ss_pred             HHHHCCCHHHHHHHHHhCCCC---CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHH
Confidence            466778899999999888764   44455555445544443211          233444322     245667999999


Q ss_pred             HHHHHHHHHhCCCC--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 029199           70 EEYYKKMVEENPGN--PLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAV  147 (197)
Q Consensus        70 ~~~~~~al~~~P~~--~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al  147 (197)
                      .++|+...+..+-.  ...|..+...+.+ .|++++|.+.+++. ...| +..+|..+...+...| +++.|...+++.+
T Consensus       446 ~~~f~~m~~~~g~~p~~~~y~~li~~l~r-~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g-~~~~a~~~~~~l~  521 (697)
T PLN03081        446 WEIFQSMSENHRIKPRAMHYACMIELLGR-EGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHK-NLELGRLAAEKLY  521 (697)
T ss_pred             HHHHHHHHHhcCCCCCccchHhHHHHHHh-cCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcC-CcHHHHHHHHHHh
Confidence            99999987643322  3345666666666 99999999998875 2344 4567888888877766 5999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          148 HASPEDSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       148 ~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      .+.|++...|..+..+|.+.|++++|.+.++.+
T Consensus       522 ~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m  554 (697)
T PLN03081        522 GMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETL  554 (697)
T ss_pred             CCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHH
Confidence            999999999999999999999999998888776

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.39  E-value=7.8e-06  Score=60.85  Aligned_cols=115  Identities=24%  Similarity=0.308  Sum_probs=81.1

Q ss_pred             CCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHcCCHHH
Q 029199           63 GGDSQGVEEYYKKMVEENP---GNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPG-DGEILSQYAKLVWELHNDQDR  138 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~P---~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~l~~~~~~~~~  138 (197)
                      .|+++.|...|++++..+|   .....+..++..+.. .+++++++..+.+++...|. ....+..++..+...+ ++++
T Consensus       143 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  220 (291)
T COG0457         143 LGDYEEALELYEKALELDPELNELAEALLALGALLEA-LGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG-KYEE  220 (291)
T ss_pred             cCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHH-hcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc-cHHH
Confidence            4778888888888777666   344555555544444 67888888888888888777 5777777877777766 4778


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCc
Q 029199          139 AATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSE  179 (197)
Q Consensus       139 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~  179 (197)
                      |...+.+++...|.....+..++..+...++.+++...+.+
T Consensus       221 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (291)
T COG0457         221 ALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEK  261 (291)
T ss_pred             HHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHH
Confidence            88888888888777667777777777755656666554444

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.38  E-value=1e-06  Score=67.50  Aligned_cols=92  Identities=16%  Similarity=0.196  Sum_probs=83.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 029199           87 LSNYAQFLYQSKQDLPKAEEYYSRAILADPGDG-----EILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYA  161 (197)
Q Consensus        87 ~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~-----~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  161 (197)
                      +..=|+-++. .|+|.+|..-|..||.+-|.-+     ..+.|.|.++.+++. ++.|++.+.++++++|.+..++..++
T Consensus        98 lK~EGN~~F~-ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k-~e~aI~dcsKaiel~pty~kAl~RRA  175 (271)
T KOG4234|consen   98 LKKEGNELFK-NGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRK-WESAIEDCSKAIELNPTYEKALERRA  175 (271)
T ss_pred             HHHHHHHhhh-cccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhh-HHHHHHHHHhhHhcCchhHHHHHHHH
Confidence            3445778887 9999999999999999999765     467788999999996 99999999999999999999999999


Q ss_pred             HHHHHcCCccccccCCCcc
Q 029199          162 GFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       162 ~~~~~~g~~~ea~~~~~~~  180 (197)
                      ..|.++.++++|+.+|..+
T Consensus       176 eayek~ek~eealeDyKki  194 (271)
T KOG4234|consen  176 EAYEKMEKYEEALEDYKKI  194 (271)
T ss_pred             HHHHhhhhHHHHHHHHHHH
Confidence            9999999999999988876

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=98.38  E-value=6.5e-07  Score=76.07  Aligned_cols=112  Identities=17%  Similarity=0.110  Sum_probs=98.1

Q ss_pred             cCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 029199           60 AGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRA  139 (197)
Q Consensus        60 ~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A  139 (197)
                      +...++++.|+..|.++|+++|+++..+-+++..+.+ .+++..|+..+.+|++++|...-+++..|.+...+++ +.+|
T Consensus        14 ~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK-~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~-~~~A   91 (476)
T KOG0376|consen   14 ALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLK-VESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE-FKKA   91 (476)
T ss_pred             hcccchHHHHHHHHHHHHhcCCcceeeechhhhhhee-echhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH-HHHH
Confidence            3445899999999999999999999999999966665 9999999999999999999999999999999999886 9999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHc--CCcccc
Q 029199          140 ATYYERAVHASPEDSHVHASYAGFLWET--EEDNDE  173 (197)
Q Consensus       140 ~~~~~~al~~~p~~~~~~~~la~~~~~~--g~~~ea  173 (197)
                      +..|++...+.|+++.+...+-.|-...  -+++.+
T Consensus        92 ~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~fe~a  127 (476)
T KOG0376|consen   92 LLDLEKVKKLAPNDPDATRKIDECNKIVSEEKFEKA  127 (476)
T ss_pred             HHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHhhhhc
Confidence            9999999999999999987777664443  344444

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.37  E-value=2.5e-06  Score=74.06  Aligned_cols=147  Identities=17%  Similarity=0.080  Sum_probs=92.6

Q ss_pred             hHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHH
Q 029199            7 SEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLF   86 (197)
Q Consensus         7 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~   86 (197)
                      ...+++++|+...++.+...|+++.....+-+.+-..                    ++|++|++..++-....-.+.. 
T Consensus        23 ~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~--------------------~ky~~ALk~ikk~~~~~~~~~~-   81 (652)
T KOG2376|consen   23 GKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQL--------------------DKYEDALKLIKKNGALLVINSF-   81 (652)
T ss_pred             ccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhh--------------------hHHHHHHHHHHhcchhhhcchh-
Confidence            4567889999999999999999998888888887765                    4555555332222111111111 


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------------------
Q 029199           87 LSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAV-------------------  147 (197)
Q Consensus        87 ~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al-------------------  147 (197)
                      .+..+.|.|+ .++.++|+.+++   -+++.+..+....|.+++.+++ |++|.+.|+..+                   
T Consensus        82 ~fEKAYc~Yr-lnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~-ydealdiY~~L~kn~~dd~d~~~r~nl~a~~  156 (652)
T KOG2376|consen   82 FFEKAYCEYR-LNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLER-YDEALDIYQHLAKNNSDDQDEERRANLLAVA  156 (652)
T ss_pred             hHHHHHHHHH-cccHHHHHHHHh---cccccchHHHHHHHHHHHHHhh-HHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence            1344555555 566666666555   3445555555555555555554 556655555542                   


Q ss_pred             -----------HhCCC-CHHHHHHHHHHHHHcCCccccccCCCc
Q 029199          148 -----------HASPE-DSHVHASYAGFLWETEEDNDECDAPSE  179 (197)
Q Consensus       148 -----------~~~p~-~~~~~~~la~~~~~~g~~~ea~~~~~~  179 (197)
                                 ...|+ ..+.+||.+.++...|++.+|++.++.
T Consensus       157 a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~k  200 (652)
T KOG2376|consen  157 AALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEK  200 (652)
T ss_pred             HhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence                       23343 556789999999999999999877766

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.37  E-value=4e-07  Score=71.17  Aligned_cols=88  Identities=16%  Similarity=0.189  Sum_probs=81.2

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc
Q 029199           91 AQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEED  170 (197)
Q Consensus        91 a~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  170 (197)
                      |+.++. ..++..|+.+|-+++.++|..+..+.|.+.++.++++ ++....-.+++++++|+-...++.+|.++.....+
T Consensus        17 gnk~f~-~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~-~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~   94 (284)
T KOG4642|consen   17 GNKCFI-PKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKH-WEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGY   94 (284)
T ss_pred             cccccc-hhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhh-hhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccc
Confidence            445565 6789999999999999999999999999999999885 99999999999999999999999999999999999


Q ss_pred             cccccCCCcc
Q 029199          171 NDECDAPSEL  180 (197)
Q Consensus       171 ~ea~~~~~~~  180 (197)
                      ++++..+++.
T Consensus        95 ~eaI~~Lqra  104 (284)
T KOG4642|consen   95 DEAIKVLQRA  104 (284)
T ss_pred             cHHHHHHHHH
Confidence            9998877774

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.37  E-value=4.6e-06  Score=60.69  Aligned_cols=84  Identities=19%  Similarity=0.120  Sum_probs=73.0

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HH
Q 029199           84 PLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDG---EILSQYAKLVWELHNDQDRAATYYERAVHASPEDSH---VH  157 (197)
Q Consensus        84 ~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~---~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~---~~  157 (197)
                      +..++.-|.-.+. .|++++|++.|+......|..+   .+...++.+++..+ ++++|+..+++-++++|.++.   ++
T Consensus        10 ~~~ly~~a~~~l~-~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~-~y~~A~a~~~rFirLhP~hp~vdYa~   87 (142)
T PF13512_consen   10 PQELYQEAQEALQ-KGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQG-DYEEAIAAYDRFIRLHPTHPNVDYAY   87 (142)
T ss_pred             HHHHHHHHHHHHH-hCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCCCCccHHH
Confidence            5567778877777 8999999999999999988654   68899999999977 599999999999999998874   68


Q ss_pred             HHHHHHHHHcCC
Q 029199          158 ASYAGFLWETEE  169 (197)
Q Consensus       158 ~~la~~~~~~g~  169 (197)
                      +..|.++..+.+
T Consensus        88 Y~~gL~~~~~~~   99 (142)
T PF13512_consen   88 YMRGLSYYEQDE   99 (142)
T ss_pred             HHHHHHHHHHhh
Confidence            899999988865

>PLN03077 Protein ECB2; Provisional

Probab=98.36  E-value=2e-06  Score=80.00  Aligned_cols=128  Identities=8%  Similarity=-0.020  Sum_probs=98.6

Q ss_pred             ccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHcCCH
Q 029199           59 PAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILA--DPGDGEILSQYAKLVWELHNDQ  136 (197)
Q Consensus        59 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~l~~~~~~~  136 (197)
                      .+.+.|+.++|.+.|++.    +.+...|+.+...+.. .|+.++|++.|++..+.  .|+......-+ ..+...| ..
T Consensus       533 ~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~-~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll-~a~~~~g-~v  605 (857)
T PLN03077        533 LYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVA-HGKGSMAVELFNRMVESGVNPDEVTFISLL-CACSRSG-MV  605 (857)
T ss_pred             HHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCCcccHHHHH-HHHhhcC-hH
Confidence            344569999999999886    5678889988877776 99999999999998874  57766654444 4567767 59


Q ss_pred             HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCccccccCCCcccccccchhhhhhh
Q 029199          137 DRAATYYERAVHAS--PEDSHVHASYAGFLWETEEDNDECDAPSELDSNTLQIGHAAVA  193 (197)
Q Consensus       137 ~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~ea~~~~~~~~~~~~~~~~~~~~  193 (197)
                      ++|.++|+...+..  ..+...+..+..++.+.|+.++|.+.++++|--+....+.++.
T Consensus       606 ~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl  664 (857)
T PLN03077        606 TQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALL  664 (857)
T ss_pred             HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHH
Confidence            99999999998543  2246789999999999999999999999986444444444433

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.35  E-value=8.2e-07  Score=71.80  Aligned_cols=152  Identities=14%  Similarity=0.073  Sum_probs=124.7

Q ss_pred             hHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHH
Q 029199            7 SEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLF   86 (197)
Q Consensus         7 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~   86 (197)
                      ...-|+.++|+.+..-.|+.|.+-..+-..|..+..                    ..++..|..||++.-.+.|.....
T Consensus        21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~--------------------~Q~f~~AA~CYeQL~ql~P~~~qY   80 (459)
T KOG4340|consen   21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYR--------------------LQEFALAAECYEQLGQLHPELEQY   80 (459)
T ss_pred             HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHhhChHHHHH
Confidence            567799999999999999999777666666666555                    389999999999999999999988


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHH----------HH--------------------hCC--CCHHHHHHHHHHHHHHcC
Q 029199           87 LSNYAQFLYQSKQDLPKAEEYYSRA----------IL--------------------ADP--GDGEILSQYAKLVWELHN  134 (197)
Q Consensus        87 ~~~la~~l~~~~g~~~~A~~~~~~a----------l~--------------------l~P--~~~~~~~~lg~~l~~~~~  134 (197)
                      .+-.+..+|. .+.+..|+......          ++                    .-|  ++++...+.|-++++.|+
T Consensus        81 rlY~AQSLY~-A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegq  159 (459)
T KOG4340|consen   81 RLYQAQSLYK-ACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQ  159 (459)
T ss_pred             HHHHHHHHHH-hcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeecccc
Confidence            8888888887 78777765443322          22                    234  577888899988888774


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          135 DQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       135 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                       ++.|++-|+.|++...-+|-+-++++.+..+.|+++.|.+..+++
T Consensus       160 -yEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEI  204 (459)
T KOG4340|consen  160 -YEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEI  204 (459)
T ss_pred             -HHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHH
Confidence             999999999999999999999999999999999999998776664

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.33  E-value=2.9e-06  Score=77.48  Aligned_cols=162  Identities=9%  Similarity=-0.073  Sum_probs=128.3

Q ss_pred             CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCC----------------CCCCCCCCCcccCCCCCH
Q 029199            3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGG----------------GTGGGGSGFYPAGSGGDS   66 (197)
Q Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~----------------~~~~~~~~~~~~~~~g~~   66 (197)
                      |-+|.+-+...-|-.+|+++-+.|+.+.+.+-+..-........+.                -...|..+|..+...+++
T Consensus       499 G~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~  578 (1238)
T KOG1127|consen  499 GQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNL  578 (1238)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccch
Confidence            4556666667778888888888999887776554443333322111                112444567777778999


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 029199           67 QGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERA  146 (197)
Q Consensus        67 ~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~a  146 (197)
                      ..|+..|+.+++.+|++...|..+|..|.. .|++.-|++.|.+|..++|.+....+..+.+...+|+ +++|++.+...
T Consensus       579 h~aV~~fQsALR~dPkD~n~W~gLGeAY~~-sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~Gk-Ykeald~l~~i  656 (1238)
T KOG1127|consen  579 HGAVCEFQSALRTDPKDYNLWLGLGEAYPE-SGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGK-YKEALDALGLI  656 (1238)
T ss_pred             hhHHHHHHHHhcCCchhHHHHHHHHHHHHh-cCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhh-HHHHHHHHHHH
Confidence            999999999999999999999999988888 9999999999999999999999999999999999996 99999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHH
Q 029199          147 VHASPEDSHVHASYAGFLWE  166 (197)
Q Consensus       147 l~~~p~~~~~~~~la~~~~~  166 (197)
                      +......-.+...++.++.+
T Consensus       657 i~~~s~e~~~q~gLaE~~ir  676 (1238)
T KOG1127|consen  657 IYAFSLERTGQNGLAESVIR  676 (1238)
T ss_pred             HHHHHHHHHhhhhHHHHHHH
Confidence            88776655555555555544

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.33  E-value=5.4e-07  Score=67.70  Aligned_cols=106  Identities=14%  Similarity=0.068  Sum_probs=74.4

Q ss_pred             HHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 029199           12 VMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYA   91 (197)
Q Consensus        12 ~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la   91 (197)
                      ++.|...+...-..+|.|++.+..=|.+|..++.+..+.          ....-+++|+.-|++||.++|+...++.++|
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~----------es~~miedAisK~eeAL~I~P~~hdAlw~lG   76 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGP----------ESKKMIEDAISKFEEALKINPNKHDALWCLG   76 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HH----------HHHHHHHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcc----------hHHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence            344555555555779999999999999987764321000          0013468899999999999999999999999


Q ss_pred             HHHHHhcC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 029199           92 QFLYQSKQ-----------DLPKAEEYYSRAILADPGDGEILSQYAKL  128 (197)
Q Consensus        92 ~~l~~~~g-----------~~~~A~~~~~~al~l~P~~~~~~~~lg~~  128 (197)
                      +.+.. .+           -|++|..+|++|+..+|+|..++..+...
T Consensus        77 nA~ts-~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~  123 (186)
T PF06552_consen   77 NAYTS-LAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA  123 (186)
T ss_dssp             HHHHH-HHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred             HHHHH-HHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence            88876 55           47889999999999999999887777643

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.27  E-value=3e-06  Score=45.96  Aligned_cols=33  Identities=27%  Similarity=0.378  Sum_probs=17.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 029199           85 LFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGD  118 (197)
Q Consensus        85 ~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~  118 (197)
                      .+|+.+|.+++. +|++++|+++|+++++++|+|
T Consensus         2 ~~~~~lg~~~~~-~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    2 EAWYYLGQAYYQ-LGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHH-TT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHH-hCCHHHHHHHHHHHHHHCcCC
Confidence            345555544444 555555555555555555543

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.27  E-value=2.1e-06  Score=46.81  Aligned_cols=32  Identities=34%  Similarity=0.450  Sum_probs=16.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 029199           85 LFLSNYAQFLYQSKQDLPKAEEYYSRAILADPG  117 (197)
Q Consensus        85 ~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~  117 (197)
                      .+|+++|.++.. +|++++|+.+|+++++++|+
T Consensus         2 ~~~~~~g~~~~~-~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQ-LGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHH-TT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHH-hCCchHHHHHHHHHHHHCcC
Confidence            345555544444 55555555555555555554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.26  E-value=1.2e-05  Score=59.85  Aligned_cols=148  Identities=22%  Similarity=0.176  Sum_probs=110.8

Q ss_pred             HHHHHHhhhcCcccc--cCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 029199           10 VKVMEALWNAGFEQE--RGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFL   87 (197)
Q Consensus        10 ~~~~~a~~~~~~~~~--~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~   87 (197)
                      +....++..+.....  ..+.....+...|.....                    .+++..+++.+.+++..++.+....
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~  132 (291)
T COG0457          73 GRLEEALELLEKALELELLPNLAEALLNLGLLLEA--------------------LGKYEEALELLEKALALDPDPDLAE  132 (291)
T ss_pred             ccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHH--------------------HhhHHHHHHHHHHHHcCCCCcchHH
Confidence            334444444444333  455555666666655544                    3778999999999999888875555


Q ss_pred             HHHHH-HHHHhcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Q 029199           88 SNYAQ-FLYQSKQDLPKAEEYYSRAILADP---GDGEILSQYAKLVWELHNDQDRAATYYERAVHASPE-DSHVHASYAG  162 (197)
Q Consensus        88 ~~la~-~l~~~~g~~~~A~~~~~~al~l~P---~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~  162 (197)
                      ...+. ++.. .+++++|...|++++..+|   .........+..+...+ ++++++..+.+++...|. ....+..++.
T Consensus       133 ~~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  210 (291)
T COG0457         133 ALLALGALYE-LGDYEEALELYEKALELDPELNELAEALLALGALLEALG-RYEEALELLEKALKLNPDDDAEALLNLGL  210 (291)
T ss_pred             HHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhc-CHHHHHHHHHHHHhhCcccchHHHHHhhH
Confidence            55554 5666 9999999999999998887   45666667776666766 489999999999999999 6999999999


Q ss_pred             HHHHcCCccccccCCCc
Q 029199          163 FLWETEEDNDECDAPSE  179 (197)
Q Consensus       163 ~~~~~g~~~ea~~~~~~  179 (197)
                      ++...++++++...+..
T Consensus       211 ~~~~~~~~~~a~~~~~~  227 (291)
T COG0457         211 LYLKLGKYEEALEYYEK  227 (291)
T ss_pred             HHHHcccHHHHHHHHHH
Confidence            99999988888766655

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.23  E-value=4.3e-06  Score=72.67  Aligned_cols=112  Identities=14%  Similarity=0.059  Sum_probs=92.1

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 029199           63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATY  142 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~  142 (197)
                      .|+|++|++...+.+...|++..+...--.++.. .++|++|+...++-..+.-.+... +..+.|.|++++ .++|+.+
T Consensus        25 ~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq-~~ky~~ALk~ikk~~~~~~~~~~~-fEKAYc~Yrlnk-~Dealk~  101 (652)
T KOG2376|consen   25 NGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQ-LDKYEDALKLIKKNGALLVINSFF-FEKAYCEYRLNK-LDEALKT  101 (652)
T ss_pred             chHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhh-hhHHHHHHHHHHhcchhhhcchhh-HHHHHHHHHccc-HHHHHHH
Confidence            5999999999999999999999988866645555 899999996655544332223222 688999999997 8999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          143 YERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       143 ~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      +.   .+++.+..+..-.|.+++++|+|+++.+.|+.+
T Consensus       102 ~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L  136 (652)
T KOG2376|consen  102 LK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHL  136 (652)
T ss_pred             Hh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            99   557777889999999999999999999999987

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.17  E-value=3.8e-06  Score=45.74  Aligned_cols=34  Identities=24%  Similarity=0.512  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 029199          119 GEILSQYAKLVWELHNDQDRAATYYERAVHASPED  153 (197)
Q Consensus       119 ~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~  153 (197)
                      +.+|+++|.++..+++ +++|+.+|+++++++|++
T Consensus         1 a~~~~~~g~~~~~~~~-~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGD-YEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT--HHHHHHHHHHHHHHSTTH
T ss_pred             CHHHHHHHHHHHHhCC-chHHHHHHHHHHHHCcCC
Confidence            4689999999999885 999999999999999974

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=98.17  E-value=3.9e-05  Score=65.80  Aligned_cols=93  Identities=14%  Similarity=0.310  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 029199           68 GVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAV  147 (197)
Q Consensus        68 ~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al  147 (197)
                      .=...|+.++...+.|...|.++..+..+ .+.+.+--..|.+++..+|++|++|..-+...+..+...+.|...|.++|
T Consensus        89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk-~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgL  167 (568)
T KOG2396|consen   89 RIVFLYRRATNRFNGDVKLWLSYIAFCKK-KKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGL  167 (568)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHH-hcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence            44678999999999999999999966665 77799999999999999999999999999999998877999999999999


Q ss_pred             HhCCCCHHHHHHHH
Q 029199          148 HASPEDSHVHASYA  161 (197)
Q Consensus       148 ~~~p~~~~~~~~la  161 (197)
                      +.+|++|..|.-+-
T Consensus       168 R~npdsp~Lw~eyf  181 (568)
T KOG2396|consen  168 RFNPDSPKLWKEYF  181 (568)
T ss_pred             hcCCCChHHHHHHH
Confidence            99999999886443

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.17  E-value=5.8e-06  Score=44.82  Aligned_cols=34  Identities=24%  Similarity=0.468  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 029199          119 GEILSQYAKLVWELHNDQDRAATYYERAVHASPED  153 (197)
Q Consensus       119 ~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~  153 (197)
                      +.+++.+|.+++..|+ +++|+++|+++++++|+|
T Consensus         1 a~~~~~lg~~~~~~~~-~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGN-YEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT--HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHCcCC
Confidence            5789999999999885 999999999999999986

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.14  E-value=4.9e-07  Score=58.94  Aligned_cols=63  Identities=16%  Similarity=0.301  Sum_probs=52.5

Q ss_pred             CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCC---HHHHHHHHHHHHHcCCccccccCCCc
Q 029199          116 PGDGEILSQYAKLVWELHNDQDRAATYYERAVHAS----PED---SHVHASYAGFLWETEEDNDECDAPSE  179 (197)
Q Consensus       116 P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~----p~~---~~~~~~la~~~~~~g~~~ea~~~~~~  179 (197)
                      |+-..++.++|.++..+|+ +++|+++|++++++.    +++   ..++.++|.++..+|++++|++.+++
T Consensus         2 ~~~a~~~~~la~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~   71 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELGR-YDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQK   71 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            4456789999999999885 999999999999762    222   45789999999999999999988776

...

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=98.12  E-value=1.4e-05  Score=65.13  Aligned_cols=114  Identities=16%  Similarity=0.305  Sum_probs=85.1

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 029199           65 DSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYE  144 (197)
Q Consensus        65 ~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~  144 (197)
                      ..+.|.+.|.+|++..+....+|...|.+=+...++.+.|...|+++++..|.++.+|..+...+...+ +.+.|...|+
T Consensus        16 g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~-d~~~aR~lfe   94 (280)
T PF05843_consen   16 GIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLN-DINNARALFE   94 (280)
T ss_dssp             HHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT--HHHHHHHHH
T ss_pred             ChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhC-cHHHHHHHHH
Confidence            367888999999866666788888888554553456666999999999999999999999999988877 5889999999


Q ss_pred             HHHHhCCCCH---HHHHHHHHHHHHcCCccccccCCCc
Q 029199          145 RAVHASPEDS---HVHASYAGFLWETEEDNDECDAPSE  179 (197)
Q Consensus       145 ~al~~~p~~~---~~~~~la~~~~~~g~~~ea~~~~~~  179 (197)
                      +++..-|...   .+|..+...-.+.|+.+......++
T Consensus        95 r~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R  132 (280)
T PF05843_consen   95 RAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKR  132 (280)
T ss_dssp             HHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHH
T ss_pred             HHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            9998877655   5777777777777877665444444

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=98.12  E-value=8.7e-06  Score=66.25  Aligned_cols=95  Identities=20%  Similarity=0.319  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 029199           85 LFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFL  164 (197)
Q Consensus        85 ~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  164 (197)
                      .+|..+..+..+ .+..+.|+..|++|++..+-...+|...|.+.+..+++.+.|...|+++++..|.++..|..+...+
T Consensus         2 ~v~i~~m~~~~r-~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l   80 (280)
T PF05843_consen    2 LVWIQYMRFMRR-TEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL   80 (280)
T ss_dssp             HHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-hCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence            478888888887 6779999999999997777789999999999888787776799999999999999999999999999


Q ss_pred             HHcCCccccccCCCcc
Q 029199          165 WETEEDNDECDAPSEL  180 (197)
Q Consensus       165 ~~~g~~~ea~~~~~~~  180 (197)
                      ...|+.+.+...|++.
T Consensus        81 ~~~~d~~~aR~lfer~   96 (280)
T PF05843_consen   81 IKLNDINNARALFERA   96 (280)
T ss_dssp             HHTT-HHHHHHHHHHH
T ss_pred             HHhCcHHHHHHHHHHH
Confidence            9999999998888885

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.11  E-value=5.5e-05  Score=60.29  Aligned_cols=72  Identities=15%  Similarity=0.145  Sum_probs=38.9

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccc
Q 029199          100 DLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDND  172 (197)
Q Consensus       100 ~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~e  172 (197)
                      +...|.-.|+..-...|..+..+...+.+...+++ +++|...++.+|..++++|+++.|+..+-..+|+..+
T Consensus       188 k~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~-~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~  259 (299)
T KOG3081|consen  188 KIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGR-YEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAE  259 (299)
T ss_pred             hhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcC-HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChH
Confidence            45555555555555455555555555555555553 5555555555555555555555555555555555544

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=98.10  E-value=3.4e-05  Score=66.23  Aligned_cols=116  Identities=17%  Similarity=0.112  Sum_probs=92.8

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-----------C----------C----
Q 029199           64 GDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADP-----------G----------D----  118 (197)
Q Consensus        64 g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P-----------~----------~----  118 (197)
                      .+...-++.-++||+++|+.+.+|.-|+.-   ...-..+|+++|+++++...           .          +    
T Consensus       182 Rnp~aRIkaA~eALei~pdCAdAYILLAEE---eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~  258 (539)
T PF04184_consen  182 RNPQARIKAAKEALEINPDCADAYILLAEE---EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVL  258 (539)
T ss_pred             CCHHHHHHHHHHHHHhhhhhhHHHhhcccc---cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchh
Confidence            678888999999999999999999988731   13456777777777776511           0          1    


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCccccccCCCccccc
Q 029199          119 GEILSQYAKLVWELHNDQDRAATYYERAVHASPE--DSHVHASYAGFLWETEEDNDECDAPSELDSN  183 (197)
Q Consensus       119 ~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~ea~~~~~~~~~~  183 (197)
                      +.+...+|++++++|+ .++|++.++..++..|.  +-.++.++..++..++++.++...+.+..++
T Consensus       259 ~y~KrRLAmCarklGr-~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi  324 (539)
T PF04184_consen  259 VYAKRRLAMCARKLGR-LREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI  324 (539)
T ss_pred             hhhHHHHHHHHHHhCC-hHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence            3456778999999997 89999999999988775  6679999999999999999998777765443

The molecular function of this protein is uncertain.

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.08  E-value=6.6e-05  Score=59.32  Aligned_cols=100  Identities=21%  Similarity=0.242  Sum_probs=83.4

Q ss_pred             CcccCCCCCHHHHHHHHHHHHH--------hCCCC----------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 029199           57 FYPAGSGGDSQGVEEYYKKMVE--------ENPGN----------PLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGD  118 (197)
Q Consensus        57 ~~~~~~~g~~~~A~~~~~~al~--------~~P~~----------~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~  118 (197)
                      |..+...|++.+|...|+.|+.        ..|.+          ...+.|+..++.. .|++-++++.....|..+|.|
T Consensus       185 GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~-~~e~yevleh~seiL~~~~~n  263 (329)
T KOG0545|consen  185 GNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLK-KEEYYEVLEHCSEILRHHPGN  263 (329)
T ss_pred             hhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhh-HHHHHHHHHHHHHHHhcCCch
Confidence            4456667999999999999864        24544          3457788888887 899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 029199          119 GEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHA  158 (197)
Q Consensus       119 ~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~  158 (197)
                      ..+++..|.+....=+ .++|..-|.++|+++|.-..+-.
T Consensus       264 vKA~frRakAhaa~Wn-~~eA~~D~~~vL~ldpslasvVs  302 (329)
T KOG0545|consen  264 VKAYFRRAKAHAAVWN-EAEAKADLQKVLELDPSLASVVS  302 (329)
T ss_pred             HHHHHHHHHHHHhhcC-HHHHHHHHHHHHhcChhhHHHHH
Confidence            9999999999888775 78999999999999998655543

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.03  E-value=4.1e-05  Score=67.29  Aligned_cols=80  Identities=23%  Similarity=0.218  Sum_probs=41.9

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCC
Q 029199           98 KQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAP  177 (197)
Q Consensus        98 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~  177 (197)
                      .|++++|++++++|+...|..++.+...|.+|-..| ++++|.++++.|..+|+.|-.+-...+..+.+.|+.++|+...
T Consensus       207 ~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G-~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~  285 (517)
T PF12569_consen  207 LGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAG-DLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTA  285 (517)
T ss_pred             hCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            555555555555555555555555555555555544 3555555555555555555555555555555555555554333


Q ss_pred             C
Q 029199          178 S  178 (197)
Q Consensus       178 ~  178 (197)
                      .
T Consensus       286 ~  286 (517)
T PF12569_consen  286 S  286 (517)
T ss_pred             H
Confidence            3

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.03  E-value=3e-05  Score=63.44  Aligned_cols=95  Identities=16%  Similarity=0.083  Sum_probs=81.6

Q ss_pred             CcccCCCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 029199           57 FYPAGSGGDSQGVEEYYKKMVEENPGN----PLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWEL  132 (197)
Q Consensus        57 ~~~~~~~g~~~~A~~~~~~al~~~P~~----~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~  132 (197)
                      |..++..++|..|+.+|.+.|+....|    ...|+|++.+-+. .|+|..|+..+.+++.++|.+.-+++.-+.+++++
T Consensus        88 GN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~-l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eL  166 (390)
T KOG0551|consen   88 GNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLY-LGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLEL  166 (390)
T ss_pred             hHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHH
Confidence            446666789999999999999987655    4467899977777 99999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHHhCCCC
Q 029199          133 HNDQDRAATYYERAVHASPED  153 (197)
Q Consensus       133 ~~~~~~A~~~~~~al~~~p~~  153 (197)
                      .+ +++|..+++..+.++-+.
T Consensus       167 e~-~~~a~nw~ee~~~~d~e~  186 (390)
T KOG0551|consen  167 ER-FAEAVNWCEEGLQIDDEA  186 (390)
T ss_pred             HH-HHHHHHHHhhhhhhhHHH
Confidence            97 899999988887776543

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.01  E-value=4.3e-05  Score=60.87  Aligned_cols=133  Identities=21%  Similarity=0.168  Sum_probs=100.4

Q ss_pred             chhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCH
Q 029199            5 ALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNP   84 (197)
Q Consensus         5 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~   84 (197)
                      |+-.+-|+.-|...+-.++..+-+..-..++..|.-..-|                  +++...|.-+|++.-+.-|-.+
T Consensus       146 I~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~g------------------gek~qdAfyifeE~s~k~~~T~  207 (299)
T KOG3081|consen  146 ILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATG------------------GEKIQDAFYIFEELSEKTPPTP  207 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhcc------------------chhhhhHHHHHHHHhcccCCCh
Confidence            3445666777777766666554333222244444322222                  2678999999999999888889


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 029199           85 LFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHV  156 (197)
Q Consensus        85 ~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~  156 (197)
                      ...+..+.+... ++++++|...++.+|..+|++|+++.|+-.+-..+|.+.+--.+++.+....+|+++-+
T Consensus       208 ~llnG~Av~~l~-~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~v  278 (299)
T KOG3081|consen  208 LLLNGQAVCHLQ-LGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFV  278 (299)
T ss_pred             HHHccHHHHHHH-hcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHH
Confidence            999999977776 99999999999999999999999999999888888887656677788888888988755

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.00  E-value=5.7e-05  Score=62.19  Aligned_cols=119  Identities=13%  Similarity=0.047  Sum_probs=101.6

Q ss_pred             ccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHHHcC
Q 029199           59 PAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILA-DPGD---GEILSQYAKLVWELHN  134 (197)
Q Consensus        59 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l-~P~~---~~~~~~lg~~l~~~~~  134 (197)
                      ..--+|++.+|....++.++-.|.+--++.---..++. +|+...-...+++.+.. +|+-   ..+.--++-.+.+.|-
T Consensus       112 i~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy-~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~  190 (491)
T KOG2610|consen  112 ILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFY-NGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGI  190 (491)
T ss_pred             HhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHh-ccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhcc
Confidence            44446899999999999999999999888765556666 89999999999999987 7777   4555566677888884


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCc
Q 029199          135 DQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSE  179 (197)
Q Consensus       135 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~  179 (197)
                       +++|.+.-+++++++|.+.-+....+.++...|++.|+.+..++
T Consensus       191 -y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~  234 (491)
T KOG2610|consen  191 -YDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYK  234 (491)
T ss_pred             -chhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence             99999999999999999999999999999999999999776665

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.00  E-value=9.8e-05  Score=56.19  Aligned_cols=115  Identities=16%  Similarity=0.053  Sum_probs=97.1

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 029199           63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAIL-ADPGDGEILSQYAKLVWELHNDQDRAAT  141 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~-l~P~~~~~~~~lg~~l~~~~~~~~~A~~  141 (197)
                      .=|.+.......+.+...|.... .+.||..+.. .|++.+|..+|++++. +.-+++.++..++...+.+++ +..|..
T Consensus        69 ~ldP~R~~Rea~~~~~~ApTvqn-r~rLa~al~e-lGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~-~A~a~~  145 (251)
T COG4700          69 KLDPERHLREATEELAIAPTVQN-RYRLANALAE-LGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQE-FAAAQQ  145 (251)
T ss_pred             hcChhHHHHHHHHHHhhchhHHH-HHHHHHHHHH-hhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhcc-HHHHHH
Confidence            34556666667777777786554 5568988888 9999999999999985 567899999999999999995 999999


Q ss_pred             HHHHHHHhCCC--CHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          142 YYERAVHASPE--DSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       142 ~~~~al~~~p~--~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      .+++..+.+|.  .|+.+.-+|.++..+|++.+|+..|+-.
T Consensus       146 tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a  186 (251)
T COG4700         146 TLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVA  186 (251)
T ss_pred             HHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHH
Confidence            99999999875  6788899999999999999998777763

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.97  E-value=0.0001  Score=66.99  Aligned_cols=135  Identities=13%  Similarity=0.060  Sum_probs=99.2

Q ss_pred             HHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 029199            8 EEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFL   87 (197)
Q Consensus         8 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~   87 (197)
                      +-++++.|+...++.+++.|+.+....-+++.+.+.                    |+.++|..+++..-..-++|...+
T Consensus        21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~--------------------gk~~ea~~~Le~~~~~~~~D~~tL   80 (932)
T KOG2053|consen   21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRL--------------------GKGDEALKLLEALYGLKGTDDLTL   80 (932)
T ss_pred             hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHh--------------------cCchhHHHHHhhhccCCCCchHHH
Confidence            456788888888888889998888888888888874                    778888888888777777777777


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 029199           88 SNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLW  165 (197)
Q Consensus        88 ~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  165 (197)
                      --+-.++.. ++++++|..+|++++..+|+ ...++.+=++|.+.+. |.+=.+.--+.-+.-|+++...++..-+..
T Consensus        81 q~l~~~y~d-~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~-yk~qQkaa~~LyK~~pk~~yyfWsV~Slil  155 (932)
T KOG2053|consen   81 QFLQNVYRD-LGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKS-YKKQQKAALQLYKNFPKRAYYFWSVISLIL  155 (932)
T ss_pred             HHHHHHHHH-HhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCcccchHHHHHHHHH
Confidence            777756665 89999999999999998988 6666666666666553 554444444444566887765554444443

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.97  E-value=1.5e-05  Score=64.62  Aligned_cols=116  Identities=12%  Similarity=0.071  Sum_probs=97.4

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 029199           63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATY  142 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~  142 (197)
                      ..++..|++++..-.+.+|.+-..+..||.++|. ..++..|.+||++.-.+.|......+..+..+++.+. +.+|+..
T Consensus        23 d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~-~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i-~ADALrV  100 (459)
T KOG4340|consen   23 DARYADAIQLLGSELERSPRSRAGLSLLGYCYYR-LQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACI-YADALRV  100 (459)
T ss_pred             HhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcc-cHHHHHH
Confidence            4788999999999999999999999999999998 9999999999999999999999999999988888776 6677654


Q ss_pred             HHHHH------------------------------HhCC--CCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          143 YERAV------------------------------HASP--EDSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       143 ~~~al------------------------------~~~p--~~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      .....                              +.-|  +......+.|.++.+.|++++|++-|+..
T Consensus       101 ~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaA  170 (459)
T KOG4340|consen  101 AFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAA  170 (459)
T ss_pred             HHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHH
Confidence            43221                              1224  46677889999999999999998888873

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=97.97  E-value=3.3e-05  Score=62.88  Aligned_cols=72  Identities=24%  Similarity=0.251  Sum_probs=61.6

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 029199           91 AQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFL  164 (197)
Q Consensus        91 a~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  164 (197)
                      +.-.++ .|+.++|...|+.|++++|++|+++..+|.+.-. .++.-+|-.||-+||.++|.|.+++.+.....
T Consensus       123 A~~~~~-~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~-~~~iv~ADq~Y~~ALtisP~nseALvnR~RT~  194 (472)
T KOG3824|consen  123 AGRSRK-DGKLEKAMTLFEHALALAPTNPQILIEMGQFREM-HNEIVEADQCYVKALTISPGNSEALVNRARTT  194 (472)
T ss_pred             HHHHHh-ccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHh-hhhhHhhhhhhheeeeeCCCchHHHhhhhccc
Confidence            334455 8999999999999999999999999999987655 45688999999999999999999998887653

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.91  E-value=1.2e-06  Score=73.59  Aligned_cols=123  Identities=14%  Similarity=-0.026  Sum_probs=84.5

Q ss_pred             CCCcccCCCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC----C--CCHHHH
Q 029199           55 SGFYPAGSGGDSQGVEEYYKKMVEENPGN------PLFLSNYAQFLYQSKQDLPKAEEYYSRAILAD----P--GDGEIL  122 (197)
Q Consensus        55 ~~~~~~~~~g~~~~A~~~~~~al~~~P~~------~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~----P--~~~~~~  122 (197)
                      +.+.-+.-.|+++.|+...+.-+.+...+      -.++.|+|+++.. .|+++.|+++|++.+.+-    .  ..+..-
T Consensus       200 nLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hif-lg~fe~A~ehYK~tl~LAielg~r~vEAQsc  278 (639)
T KOG1130|consen  200 NLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIF-LGNFELAIEHYKLTLNLAIELGNRTVEAQSC  278 (639)
T ss_pred             ccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhh-hcccHhHHHHHHHHHHHHHHhcchhHHHHHH
Confidence            33444444588888888877777765443      3467788877776 788888888887766542    2  234456


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCccccccCCCc
Q 029199          123 SQYAKLVWELHNDQDRAATYYERAVHASPE------DSHVHASYAGFLWETEEDNDECDAPSE  179 (197)
Q Consensus       123 ~~lg~~l~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~ea~~~~~~  179 (197)
                      |.+|..|.-.+ ++++|++++.+=|.+.-+      ...+++.+|..+..+|..++|.-....
T Consensus       279 YSLgNtytll~-e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~  340 (639)
T KOG1130|consen  279 YSLGNTYTLLK-EVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAEL  340 (639)
T ss_pred             HHhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            77787777766 488888888888888732      445678888888888888777655444

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.89  E-value=4.2e-06  Score=68.58  Aligned_cols=90  Identities=16%  Similarity=0.093  Sum_probs=80.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 029199           61 GSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAA  140 (197)
Q Consensus        61 ~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~  140 (197)
                      ...|.++.|++.|..++.++|.....|...+.++.+ +++...|+..|..++.++|+...-+-..|.+...++ ++++|.
T Consensus       125 ln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lk-l~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg-~~e~aa  202 (377)
T KOG1308|consen  125 LNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLK-LKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLG-NWEEAA  202 (377)
T ss_pred             hcCcchhhhhcccccccccCCchhhhcccccceeee-ccCCchhhhhhhhhhccCcccccccchhhHHHHHhh-chHHHH
Confidence            445899999999999999999999999999988887 999999999999999999999988888888888878 499999


Q ss_pred             HHHHHHHHhCCC
Q 029199          141 TYYERAVHASPE  152 (197)
Q Consensus       141 ~~~~~al~~~p~  152 (197)
                      ..++.+++++-+
T Consensus       203 ~dl~~a~kld~d  214 (377)
T KOG1308|consen  203 HDLALACKLDYD  214 (377)
T ss_pred             HHHHHHHhcccc
Confidence            999999998743

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.88  E-value=0.00011  Score=63.99  Aligned_cols=119  Identities=20%  Similarity=0.161  Sum_probs=98.6

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHcCCHHH
Q 029199           63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPG----DGEILSQYAKLVWELHNDQDR  138 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~----~~~~~~~lg~~l~~~~~~~~~  138 (197)
                      ..+.+.|.+.++...+..|+..-.++..|.+... .|+.++|++.|++++.....    ....++.+++++.-+. +|++
T Consensus       246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~-~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~-~w~~  323 (468)
T PF10300_consen  246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERL-KGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQH-DWEE  323 (468)
T ss_pred             CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-hcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHc-hHHH
Confidence            5678999999999999999999999999988777 99999999999998853332    2346788899988877 5999


Q ss_pred             HHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCc-------cccccCCCccccc
Q 029199          139 AATYYERAVHASPE-DSHVHASYAGFLWETEED-------NDECDAPSELDSN  183 (197)
Q Consensus       139 A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~-------~ea~~~~~~~~~~  183 (197)
                      |.+++.+.++.+.- ..-..|..|.|+..+|+.       ++|...|.++|.+
T Consensus       324 A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l  376 (468)
T PF10300_consen  324 AAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL  376 (468)
T ss_pred             HHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence            99999999987643 444567889999999999       7788888877543

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.86  E-value=1.2e-05  Score=65.34  Aligned_cols=116  Identities=22%  Similarity=0.259  Sum_probs=84.6

Q ss_pred             CCCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCC----HHHHHHHHHHHH
Q 029199           63 GGDSQGVEEYYKKMVEENP--GN----PLFLSNYAQFLYQSKQDLPKAEEYYSRAILAD--PGD----GEILSQYAKLVW  130 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~P--~~----~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~--P~~----~~~~~~lg~~l~  130 (197)
                      .|++++|..+|.++....-  ++    ...+...+.+ +. ..++++|+.+|++|+.+.  ..+    ..++.++|.+|.
T Consensus        48 ~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~-~k-~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye  125 (282)
T PF14938_consen   48 AKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANC-YK-KGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYE  125 (282)
T ss_dssp             TT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HH-HTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHC
T ss_pred             HhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HH-hhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence            4899999999999976532  22    3345555644 44 459999999999999873  222    357788898888


Q ss_pred             HHcCCHHHHHHHHHHHHHhC--CCC----HHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          131 ELHNDQDRAATYYERAVHAS--PED----SHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       131 ~~~~~~~~A~~~~~~al~~~--p~~----~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      ...+++++|+++|++|+.+.  .+.    ...+.++|.++.++|++++|.+.|+++
T Consensus       126 ~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~  181 (282)
T PF14938_consen  126 EQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEV  181 (282)
T ss_dssp             CTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            86136999999999999873  222    245789999999999999999888875

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.86  E-value=0.00019  Score=59.54  Aligned_cols=109  Identities=14%  Similarity=0.086  Sum_probs=72.6

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHH--------------HhCC------------
Q 029199           63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAI--------------LADP------------  116 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al--------------~l~P------------  116 (197)
                      .|+|++|+..|.-+.+.+.-+.+.|.+|+.+.+. .|++.+|.....++-              +++.            
T Consensus        70 LgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~Fy-Lg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~Lq  148 (557)
T KOG3785|consen   70 LGDYEEALNVYTFLMNKDDAPAELGVNLACCKFY-LGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQ  148 (557)
T ss_pred             hccHHHHHHHHHHHhccCCCCcccchhHHHHHHH-HHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHh
Confidence            4899999999999988888888899999966666 887777765544431              1110            


Q ss_pred             CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcccc
Q 029199          117 GDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDE  173 (197)
Q Consensus       117 ~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea  173 (197)
                      +..+-...++.+.+-.. ++++|++.|.+.|.-+|+....-.+++.||.++.=++=+
T Consensus       149 D~~EdqLSLAsvhYmR~-HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvs  204 (557)
T KOG3785|consen  149 DTLEDQLSLASVHYMRM-HYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVS  204 (557)
T ss_pred             hhHHHHHhHHHHHHHHH-HHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhH
Confidence            00111122223333323 377888888888888887777777888888887666554

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=97.86  E-value=0.00025  Score=59.22  Aligned_cols=56  Identities=11%  Similarity=0.000  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcccccccchhhhhhh
Q 029199          138 RAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSELDSNTLQIGHAAVA  193 (197)
Q Consensus       138 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~~~~~~~~~~~~~~  193 (197)
                      +=++..++.++..|++|..++.+|..+.+.+.+.+|...|+..-+.+.+..+.+..
T Consensus       312 ~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~l  367 (400)
T COG3071         312 PLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAEL  367 (400)
T ss_pred             HHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHH
Confidence            33555566677789999999999999999999999988888743344444444433

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.84  E-value=0.00021  Score=65.01  Aligned_cols=108  Identities=14%  Similarity=0.062  Sum_probs=98.1

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 029199           63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATY  142 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~  142 (197)
                      .+++.+|++...+.++..|+.+-+...-|..+.+ +|+.++|..+++..-..-++|...+-.+-.+|..+++ .++|..+
T Consensus        22 ~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r-~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~-~d~~~~~   99 (932)
T KOG2053|consen   22 SSQFKKALAKLGKLLKKHPNALYAKVLKALSLFR-LGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGK-LDEAVHL   99 (932)
T ss_pred             hHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH-hcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhh-hhHHHHH
Confidence            3899999999999999999999988877867776 9999999999988888888999999999999999996 8999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCcccc
Q 029199          143 YERAVHASPEDSHVHASYAGFLWETEEDNDE  173 (197)
Q Consensus       143 ~~~al~~~p~~~~~~~~la~~~~~~g~~~ea  173 (197)
                      |++++..+|+ .+..+.+=++|.+.+.|.+.
T Consensus       100 Ye~~~~~~P~-eell~~lFmayvR~~~yk~q  129 (932)
T KOG2053|consen  100 YERANQKYPS-EELLYHLFMAYVREKSYKKQ  129 (932)
T ss_pred             HHHHHhhCCc-HHHHHHHHHHHHHHHHHHHH
Confidence            9999999999 88889999999998888774

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.83  E-value=7.7e-05  Score=62.92  Aligned_cols=172  Identities=15%  Similarity=0.073  Sum_probs=105.5

Q ss_pred             CcchhHHHHHHHHhhh----cCcccccCCC--ChhhHHhhhcccCCCCCCCCCCCCC---CCCCcccCCCCCHHHHHHHH
Q 029199            3 GTALSEEVKVMEALWN----AGFEQERGTV--GQEMYLAKGLGVGGRGGRGGGTGGG---GSGFYPAGSGGDSQGVEEYY   73 (197)
Q Consensus         3 ~~~~~~~~~~~~a~~~----~~~~~~~~p~--~~~~~~~~g~~~~~~~~~~~~~~~~---~~~~~~~~~~g~~~~A~~~~   73 (197)
                      |+.|...|++.+|+.+    ++++.+....  ....++..|-.+-.-|..... -.|   +..+...  ...++.|.++|
T Consensus       102 GNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~-~~pee~g~f~~ev--~~al~~Av~fy  178 (639)
T KOG1130|consen  102 GNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGL-EAPEEKGAFNAEV--TSALENAVKFY  178 (639)
T ss_pred             cchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCC-CChhhcccccHHH--HHHHHHHHHHH
Confidence            7888888999888764    3333332221  223344444443332221110 011   2111111  35567788888


Q ss_pred             HHHHHhCCC------CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHcCCHHHHHH
Q 029199           74 KKMVEENPG------NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPG------DGEILSQYAKLVWELHNDQDRAAT  141 (197)
Q Consensus        74 ~~al~~~P~------~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~------~~~~~~~lg~~l~~~~~~~~~A~~  141 (197)
                      ++-+++-..      ...++-+||+.+|. .|+|++|+..-+.-|.+...      .--++.|+|.++..+|+ ++.|++
T Consensus       179 ~eNL~l~~~lgDr~aqGRa~GnLGNTyYl-LGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~-fe~A~e  256 (639)
T KOG1130|consen  179 MENLELSEKLGDRLAQGRAYGNLGNTYYL-LGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGN-FELAIE  256 (639)
T ss_pred             HHHHHHHHHhhhHHhhcchhcccCceeee-eccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcc-cHhHHH
Confidence            877765432      47778888888887 88888888877666655322      12467788888888775 888888


Q ss_pred             HHHHHHHhC------CCCHHHHHHHHHHHHHcCCccccccCCCc
Q 029199          142 YYERAVHAS------PEDSHVHASYAGFLWETEEDNDECDAPSE  179 (197)
Q Consensus       142 ~~~~al~~~------p~~~~~~~~la~~~~~~g~~~ea~~~~~~  179 (197)
                      +|.+.+.+.      .......|.+|..|.-+.++++|++.+++
T Consensus       257 hYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~r  300 (639)
T KOG1130|consen  257 HYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQR  300 (639)
T ss_pred             HHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            888776542      22345568888888888888888766655

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=97.82  E-value=0.00016  Score=63.42  Aligned_cols=101  Identities=13%  Similarity=0.077  Sum_probs=90.7

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 029199           63 GGDSQGVEEYYKKMVEENPGNPLF-LSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAAT  141 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~P~~~~~-~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~  141 (197)
                      .|+...|++|+..|+...|....+ ..+|++++.. .|....|-..+.++|.++...|..++.+|.++..+. +.++|++
T Consensus       620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~-~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~-~i~~a~~  697 (886)
T KOG4507|consen  620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIH-YGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALK-NISGALE  697 (886)
T ss_pred             cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHH-hhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHh-hhHHHHH
Confidence            489999999999999999987654 6689988888 889999999999999999999999999999999988 5999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHH
Q 029199          142 YYERAVHASPEDSHVHASYAGFLW  165 (197)
Q Consensus       142 ~~~~al~~~p~~~~~~~~la~~~~  165 (197)
                      +|+.|++++|+++.....+-.+-.
T Consensus       698 ~~~~a~~~~~~~~~~~~~l~~i~c  721 (886)
T KOG4507|consen  698 AFRQALKLTTKCPECENSLKLIRC  721 (886)
T ss_pred             HHHHHHhcCCCChhhHHHHHHHHH
Confidence            999999999999998877665544

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=97.80  E-value=0.0001  Score=69.69  Aligned_cols=123  Identities=20%  Similarity=0.289  Sum_probs=88.4

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcCCHHHHH
Q 029199           63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPG--DGEILSQYAKLVWELHNDQDRAA  140 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~--~~~~~~~lg~~l~~~~~~~~~A~  140 (197)
                      .+.+++|.++|+..++..-+...+|..++.+++. ..+-++|...+.+||+.-|.  +..+....+.+.++.| |.+++.
T Consensus      1543 ~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~-~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~G-DaeRGR 1620 (1710)
T KOG1070|consen 1543 SEKNDEADELLRLMLKKFGQTRKVWIMYADFLLR-QNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYG-DAERGR 1620 (1710)
T ss_pred             hhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhc-ccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcC-CchhhH
Confidence            3667777777777777777777777777777776 66667777777777777776  6677777777777755 577777


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcccccccch
Q 029199          141 TYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSELDSNTLQI  187 (197)
Q Consensus       141 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~~~~~~~~  187 (197)
                      ..|+..|.-.|...+.|.-+...-.+.|+.+-.++.|+|+-...+.+
T Consensus      1621 tlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1621 TLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred             HHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence            77777777777777777777777777777777777777764444443

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.80  E-value=4.4e-05  Score=62.13  Aligned_cols=115  Identities=23%  Similarity=0.232  Sum_probs=84.7

Q ss_pred             CCHHHHHHHHHHHHHhC--CCC----HHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHH
Q 029199           64 GDSQGVEEYYKKMVEEN--PGN----PLFLSNYAQFLYQSK-QDLPKAEEYYSRAILADP--GD----GEILSQYAKLVW  130 (197)
Q Consensus        64 g~~~~A~~~~~~al~~~--P~~----~~~~~~la~~l~~~~-g~~~~A~~~~~~al~l~P--~~----~~~~~~lg~~l~  130 (197)
                      .++++|+.+|++++.+.  -..    ...+.++|.++.. . |++++|+++|++|+.+.-  +.    ...+.++|.++.
T Consensus        88 ~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~-~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~  166 (282)
T PF14938_consen   88 GDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEE-QLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYA  166 (282)
T ss_dssp             TTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCC-TT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred             hCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHH
Confidence            69999999999999863  222    4567788966655 6 899999999999998832  22    245678899999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCC----H---HHHHHHHHHHHHcCCccccccCCCcc
Q 029199          131 ELHNDQDRAATYYERAVHASPED----S---HVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       131 ~~~~~~~~A~~~~~~al~~~p~~----~---~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      .+++ +++|++.|++.....-++    .   ..++..+.|+...|+...|.+.+++.
T Consensus       167 ~l~~-y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~  222 (282)
T PF14938_consen  167 RLGR-YEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERY  222 (282)
T ss_dssp             HTT--HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HhCC-HHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            9885 999999999998764221    1   34578888999999998887766663

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.79  E-value=0.00011  Score=58.07  Aligned_cols=95  Identities=13%  Similarity=0.151  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCCH----------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 029199           84 PLFLSNYAQFLYQSKQDLPKAEEYYSRAILA--------DPGDG----------EILSQYAKLVWELHNDQDRAATYYER  145 (197)
Q Consensus        84 ~~~~~~la~~l~~~~g~~~~A~~~~~~al~l--------~P~~~----------~~~~~lg~~l~~~~~~~~~A~~~~~~  145 (197)
                      ..++..-|+-+|. .|++.+|...|+.|+..        .|.+|          ..+.|+..|+...+ ++=+++++...
T Consensus       178 v~~l~q~GN~lfk-~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~-e~yevleh~se  255 (329)
T KOG0545|consen  178 VPVLHQEGNRLFK-LGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKE-EYYEVLEHCSE  255 (329)
T ss_pred             hHHHHHhhhhhhh-hccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHH-HHHHHHHHHHH
Confidence            3466778888998 99999999999888643        35544          56789999999988 57899999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          146 AVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       146 al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      .|+.+|+|..+++.+|......-+.+||..+|+.+
T Consensus       256 iL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~v  290 (329)
T KOG0545|consen  256 ILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKV  290 (329)
T ss_pred             HHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence            99999999999999999999999999999988874

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.78  E-value=0.0002  Score=57.21  Aligned_cols=101  Identities=18%  Similarity=0.266  Sum_probs=79.5

Q ss_pred             CCCCHHHHHHHHHHHHH----hC--CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 029199           62 SGGDSQGVEEYYKKMVE----EN--PGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHND  135 (197)
Q Consensus        62 ~~g~~~~A~~~~~~al~----~~--P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~  135 (197)
                      +.||.+.|..+|+..-+    ++  ...-.++.+.+.++.. .+++..|...|.+++..||.++.+.+|.+.|+.-+|+ 
T Consensus       224 Q~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg-~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~-  301 (366)
T KOG2796|consen  224 QIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLG-QNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGK-  301 (366)
T ss_pred             hcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheec-ccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHH-
Confidence            35999999999994433    22  3345567777755555 8899999999999999999999999999999999996 


Q ss_pred             HHHHHHHHHHHHHhCCCCH---HHHHHHHHHH
Q 029199          136 QDRAATYYERAVHASPEDS---HVHASYAGFL  164 (197)
Q Consensus       136 ~~~A~~~~~~al~~~p~~~---~~~~~la~~~  164 (197)
                      ..+|++.++.++.+.|...   .+.+|+..+|
T Consensus       302 l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmy  333 (366)
T KOG2796|consen  302 LKDALKQLEAMVQQDPRHYLHESVLFNLTTMY  333 (366)
T ss_pred             HHHHHHHHHHHhccCCccchhhhHHHHHHHHH
Confidence            8999999999999999743   3344554443

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.76  E-value=0.00014  Score=58.05  Aligned_cols=115  Identities=17%  Similarity=0.193  Sum_probs=97.8

Q ss_pred             CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----hC--CCCHHHHHHHHHHHHHHcCCH
Q 029199           64 GDSQGVEEYYKKMVEEN-PGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAIL----AD--PGDGEILSQYAKLVWELHNDQ  136 (197)
Q Consensus        64 g~~~~A~~~~~~al~~~-P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~----l~--P~~~~~~~~lg~~l~~~~~~~  136 (197)
                      |+|.-.+..+.+.++.+ |.++.....||.+-.. -|+.+.|..+|++.-+    ++  ..+..+.-+.+.++.-.+ ++
T Consensus       191 kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ-~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~n-n~  268 (366)
T KOG2796|consen  191 KEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQ-IGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQN-NF  268 (366)
T ss_pred             hhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheeccc-ch
Confidence            89999999999999999 7778888899988777 9999999999995433    33  345567777777777756 58


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          137 DRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       137 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      ..|...|.+++..||.++.+..+.+.|+.-+|+..+|++....+
T Consensus       269 a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~  312 (366)
T KOG2796|consen  269 AEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAM  312 (366)
T ss_pred             HHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999998777664

>PRK04841 transcriptional regulator MalT; Provisional

Probab=97.75  E-value=0.00018  Score=67.19  Aligned_cols=116  Identities=15%  Similarity=0.111  Sum_probs=89.1

Q ss_pred             CCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-----C---CHHHHHHHHHH
Q 029199           63 GGDSQGVEEYYKKMVEENPGN------PLFLSNYAQFLYQSKQDLPKAEEYYSRAILADP-----G---DGEILSQYAKL  128 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~P~~------~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P-----~---~~~~~~~lg~~  128 (197)
                      .|++++|...+++++......      ..++.++|.+++. .|++++|+..+++++.+-.     .   ...++..+|.+
T Consensus       504 ~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~-~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  582 (903)
T PRK04841        504 KGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA-QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQL  582 (903)
T ss_pred             cCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence            599999999999998764321      2355678877777 9999999999999988622     1   23446678888


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          129 VWELHNDQDRAATYYERAVHASPE-----DSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       129 l~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      ++..| ++++|..++++++.....     ....+..++.++...|++++|...+++.
T Consensus       583 ~~~~G-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a  638 (903)
T PRK04841        583 LWEWA-RLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRL  638 (903)
T ss_pred             HHHhc-CHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            88887 599999999999886321     3455677899999999999987666554

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.72  E-value=0.00042  Score=59.48  Aligned_cols=114  Identities=21%  Similarity=0.245  Sum_probs=98.1

Q ss_pred             CCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 029199           63 GGDSQGVEEYYKKMVEENPGN----PLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDR  138 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~P~~----~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~  138 (197)
                      ..+.+.+.+.|+.+|++-|+-    +.+|..+|.+..+ +-+...|.+.+-.|+-..|.+-...-.+ .+-.+++. ++.
T Consensus       379 ~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIR-q~~l~~ARkiLG~AIG~cPK~KlFk~YI-elElqL~e-fDR  455 (677)
T KOG1915|consen  379 AEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIR-QLNLTGARKILGNAIGKCPKDKLFKGYI-ELELQLRE-FDR  455 (677)
T ss_pred             hhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHH-HcccHHHHHHHHHHhccCCchhHHHHHH-HHHHHHhh-HHH
Confidence            388999999999999999985    7789999977777 8999999999999999999987665444 35566674 999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCc
Q 029199          139 AATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSE  179 (197)
Q Consensus       139 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~  179 (197)
                      ....|++-|...|+|..+|..+|.+-..+|+.+.+...|.-
T Consensus       456 cRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifel  496 (677)
T KOG1915|consen  456 CRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFEL  496 (677)
T ss_pred             HHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            99999999999999999999999999999999998665554

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.71  E-value=8.3e-05  Score=40.21  Aligned_cols=31  Identities=26%  Similarity=0.378  Sum_probs=16.4

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 029199           86 FLSNYAQFLYQSKQDLPKAEEYYSRAILADPG  117 (197)
Q Consensus        86 ~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~  117 (197)
                      +|+.+|.++.. +|++++|+.+|+++++++|+
T Consensus         3 ~~~~lg~~y~~-~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    3 AYYNLGKIYEQ-LGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHH-TTSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCC
Confidence            45555544444 55555555555555555553

...

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.71  E-value=0.001  Score=53.93  Aligned_cols=113  Identities=15%  Similarity=0.108  Sum_probs=70.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH--HHHHHHcCCHHH
Q 029199           61 GSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYA--KLVWELHNDQDR  138 (197)
Q Consensus        61 ~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg--~~l~~~~~~~~~  138 (197)
                      ...|++.+|...|..++..+|++..+...|+.++.. .|+.+.|...+...=....++. .....+  .++.+... ..+
T Consensus       145 ~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~-~g~~e~A~~iL~~lP~~~~~~~-~~~l~a~i~ll~qaa~-~~~  221 (304)
T COG3118         145 IEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLA-AGDVEAAQAILAALPLQAQDKA-AHGLQAQIELLEQAAA-TPE  221 (304)
T ss_pred             hhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHH-cCChHHHHHHHHhCcccchhhH-HHHHHHHHHHHHHHhc-CCC
Confidence            445999999999999999999999999999988888 9999887666654221111111 111111  12222221 211


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCC
Q 029199          139 AATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAP  177 (197)
Q Consensus       139 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~  177 (197)
                       ...+++.+..+|+|.++-+.++..+...|+.++|.+.+
T Consensus       222 -~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~L  259 (304)
T COG3118         222 -IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHL  259 (304)
T ss_pred             -HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence             23355556666666666666666666666666664433

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=97.71  E-value=3e-05  Score=66.15  Aligned_cols=100  Identities=11%  Similarity=-0.048  Sum_probs=90.2

Q ss_pred             HHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 029199            8 EEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFL   87 (197)
Q Consensus         8 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~   87 (197)
                      ....+..|+..++++++.+|+++..+-.+.+..-..                    +++..|+..+.++++++|....++
T Consensus        16 ~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~--------------------e~~~~Al~Da~kaie~dP~~~K~Y   75 (476)
T KOG0376|consen   16 KDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKV--------------------ESFGGALHDALKAIELDPTYIKAY   75 (476)
T ss_pred             ccchHHHHHHHHHHHHhcCCcceeeechhhhhheee--------------------chhhhHHHHHHhhhhcCchhhhee
Confidence            345678899999999999999999999998877764                    889999999999999999999999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 029199           88 SNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKL  128 (197)
Q Consensus        88 ~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~  128 (197)
                      +..|..... .+++.+|...|++...+.|+++.+.-.+-.+
T Consensus        76 ~rrg~a~m~-l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec  115 (476)
T KOG0376|consen   76 VRRGTAVMA-LGEFKKALLDLEKVKKLAPNDPDATRKIDEC  115 (476)
T ss_pred             eeccHHHHh-HHHHHHHHHHHHHhhhcCcCcHHHHHHHHHH
Confidence            999977777 9999999999999999999999998776655

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.70  E-value=9e-05  Score=63.62  Aligned_cols=102  Identities=16%  Similarity=0.130  Sum_probs=82.3

Q ss_pred             CCCHHHHHHHHHHH-HHhCCC------C--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---------C---------
Q 029199           63 GGDSQGVEEYYKKM-VEENPG------N--PLFLSNYAQFLYQSKQDLPKAEEYYSRAILA---------D---------  115 (197)
Q Consensus        63 ~g~~~~A~~~~~~a-l~~~P~------~--~~~~~~la~~l~~~~g~~~~A~~~~~~al~l---------~---------  115 (197)
                      .|++.+|.+.+... +...|.      .  -.+|+|+|.+.+. .+.+.-+..+|.+||+.         .         
T Consensus       253 ~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~-~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~  331 (696)
T KOG2471|consen  253 HGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQ-LGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQ  331 (696)
T ss_pred             hcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeee-hhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhc
Confidence            48999998887543 333333      2  3368899966666 99999999999999961         1         


Q ss_pred             CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 029199          116 PGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWE  166 (197)
Q Consensus       116 P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  166 (197)
                      .+.-+++||.|..|...|+ .-.|.+||.+++...-.||..|.+++.|.+.
T Consensus       332 nks~eilYNcG~~~Lh~gr-Pl~AfqCf~~av~vfh~nPrlWLRlAEcCim  381 (696)
T KOG2471|consen  332 NKSMEILYNCGLLYLHSGR-PLLAFQCFQKAVHVFHRNPRLWLRLAECCIM  381 (696)
T ss_pred             ccchhhHHhhhHHHHhcCC-cHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            2456889999999999997 8899999999999999999999999988654

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.59  E-value=0.0021  Score=46.79  Aligned_cols=61  Identities=25%  Similarity=0.247  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 029199           86 FLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVH  148 (197)
Q Consensus        86 ~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~  148 (197)
                      ++..++..+.. .|++++|+..+++++..+|.+..++..+-.+|...|+ ..+|+..|++..+
T Consensus        64 ~~~~l~~~~~~-~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~-~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   64 ALERLAEALLE-AGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGR-RAEALRVYERYRR  124 (146)
T ss_dssp             HHHHHHHHHHH-TT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT--HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHh-ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcC-HHHHHHHHHHHHH
Confidence            44455555555 7777777777777777777777777777777777774 7777777776643

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=97.56  E-value=0.00016  Score=59.02  Aligned_cols=67  Identities=22%  Similarity=0.415  Sum_probs=60.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 029199           61 GSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKL  128 (197)
Q Consensus        61 ~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~  128 (197)
                      ...|+.++|...|+.|+.++|++++++..+|.+.-. .++.-+|-++|-+||.++|.|.+++.|....
T Consensus       127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~-~~~iv~ADq~Y~~ALtisP~nseALvnR~RT  193 (472)
T KOG3824|consen  127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREM-HNEIVEADQCYVKALTISPGNSEALVNRART  193 (472)
T ss_pred             HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHh-hhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence            345999999999999999999999999999966555 7889999999999999999999999998753

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.55  E-value=0.00017  Score=38.91  Aligned_cols=33  Identities=27%  Similarity=0.508  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 029199          120 EILSQYAKLVWELHNDQDRAATYYERAVHASPED  153 (197)
Q Consensus       120 ~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~  153 (197)
                      .+++.+|.++..+| ++++|.++|+++++++|+|
T Consensus         2 ~~~~~lg~~y~~~~-~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    2 EAYYNLGKIYEQLG-DYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-SHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCC
Confidence            57899999999988 5999999999999999964

...

>PRK04841 transcriptional regulator MalT; Provisional

Probab=97.55  E-value=0.00099  Score=62.28  Aligned_cols=118  Identities=16%  Similarity=0.067  Sum_probs=90.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHH
Q 029199           61 GSGGDSQGVEEYYKKMVEENPGNP-----LFLSNYAQFLYQSKQDLPKAEEYYSRAILADPG--D----GEILSQYAKLV  129 (197)
Q Consensus        61 ~~~g~~~~A~~~~~~al~~~P~~~-----~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~--~----~~~~~~lg~~l  129 (197)
                      ...|++++|...+++++...|...     .++..+|.++.. .|++++|+..+++++.....  +    ..++.++|.++
T Consensus       463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~-~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~  541 (903)
T PRK04841        463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHC-KGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL  541 (903)
T ss_pred             HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence            346999999999999998655432     345678867666 99999999999999976332  1    24567788888


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          130 WELHNDQDRAATYYERAVHASPE--------DSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       130 ~~~~~~~~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      +..| ++++|..++++++++...        ....+..+|.++...|++++|...+++.
T Consensus       542 ~~~G-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~a  599 (903)
T PRK04841        542 FAQG-FLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKG  599 (903)
T ss_pred             HHCC-CHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHh
Confidence            8877 599999999999986321        2334667899999999999997666553

>PRK10941 hypothetical protein; Provisional

Probab=97.53  E-value=0.0017  Score=52.56  Aligned_cols=76  Identities=17%  Similarity=0.132  Sum_probs=66.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 029199           86 FLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGF  163 (197)
Q Consensus        86 ~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  163 (197)
                      ...++-.++.. .+++++|+.+.++.+.++|++|.-+...|.+|.+++. +..|..-++.-++..|++|.+-.-...+
T Consensus       183 ml~nLK~~~~~-~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c-~~~A~~DL~~fl~~~P~dp~a~~ik~ql  258 (269)
T PRK10941        183 LLDTLKAALME-EKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDC-EHVALSDLSYFVEQCPEDPISEMIRAQI  258 (269)
T ss_pred             HHHHHHHHHHH-cCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence            34566656666 8999999999999999999999999999999999996 8999999999999999999886554444

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.52  E-value=2.1e-05  Score=64.62  Aligned_cols=114  Identities=11%  Similarity=0.050  Sum_probs=92.7

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 029199           67 QGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERA  146 (197)
Q Consensus        67 ~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~a  146 (197)
                      +...+-++++-+..-.        +.-.+. .|.+++|++.|.+++.++|....++...+.++.++++ ...|+.-|..+
T Consensus       105 e~Tee~~eqa~e~k~~--------A~eAln-~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~k-p~~airD~d~A  174 (377)
T KOG1308|consen  105 EITEEMMDQANDKKVQ--------ASEALN-DGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKK-PNAAIRDCDFA  174 (377)
T ss_pred             hhhHHHHHHHHHHHHH--------HHHHhc-CcchhhhhcccccccccCCchhhhcccccceeeeccC-Cchhhhhhhhh
Confidence            4455666666544322        223344 7999999999999999999999999999999999997 78999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHHcCCccccccCCCcccccccchhhh
Q 029199          147 VHASPEDSHVHASYAGFLWETEEDNDECDAPSELDSNTLQIGHA  190 (197)
Q Consensus       147 l~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~~~~~~~~~~~  190 (197)
                      +.++|+...-+-..+.....+|++.++..+++..-.+...+.-+
T Consensus       175 ~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~dE~~~  218 (377)
T KOG1308|consen  175 IEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDYDEANS  218 (377)
T ss_pred             hccCcccccccchhhHHHHHhhchHHHHHHHHHHHhccccHHHH
Confidence            99999999999999999999999999988887755555444333

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=97.51  E-value=0.00019  Score=58.50  Aligned_cols=89  Identities=8%  Similarity=0.173  Sum_probs=73.4

Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 029199           72 YYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASP  151 (197)
Q Consensus        72 ~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p  151 (197)
                      .|.++....|+|+..|..++..... .+.+.+--..|.++++.+|.|.+.|..-+..-+....+++.+...|.++|+.+|
T Consensus        95 ~~~R~tnkff~D~k~w~~y~~Y~~k-~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~  173 (435)
T COG5191          95 ELYRSTNKFFNDPKIWSQYAAYVIK-KKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNS  173 (435)
T ss_pred             eeehhhhcCCCCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCC
Confidence            3456667789999999999955555 889999999999999999999999988554444444469999999999999999


Q ss_pred             CCHHHHHHHH
Q 029199          152 EDSHVHASYA  161 (197)
Q Consensus       152 ~~~~~~~~la  161 (197)
                      ++|.+|..+-
T Consensus       174 ~~p~iw~eyf  183 (435)
T COG5191         174 RSPRIWIEYF  183 (435)
T ss_pred             CCchHHHHHH
Confidence            9999986544

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=97.46  E-value=0.0045  Score=54.37  Aligned_cols=128  Identities=20%  Similarity=0.121  Sum_probs=98.3

Q ss_pred             HhhhcCcccccCCCChhhHHhh--hcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 029199           15 ALWNAGFEQERGTVGQEMYLAK--GLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQ   92 (197)
Q Consensus        15 a~~~~~~~~~~~p~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~   92 (197)
                      ++..+-..+..+|.+++++++.  .+....                    .++...+.-.+..++..+|++..++.+|+.
T Consensus        50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~--------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~  109 (620)
T COG3914          50 AIYALLLGIAINDVNPELLLAAFLSILLAP--------------------LADSTLAFLAKRIPLSVNPENCPAVQNLAA  109 (620)
T ss_pred             HHHHHHccCccCCCCHHHHHHHHHHhhccc--------------------cccchhHHHHHhhhHhcCcccchHHHHHHH
Confidence            4444555556678888887776  333333                    377778999999999999999999999997


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH------HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 029199           93 FLYQSKQDLPKAEEYYSRAILADPGDGEILSQY------AKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGF  163 (197)
Q Consensus        93 ~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~l------g~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  163 (197)
                      .+......+.-+....+.+....|+|..+...+      +..+..+++ ..++...+++++.+.|.++.+...+...
T Consensus       110 ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~l~~~~d~~p~~~~~~~~~~~~  185 (620)
T COG3914         110 ALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGR-TAEAELALERAVDLLPKYPRVLGALMTA  185 (620)
T ss_pred             HHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence            777633444555555566999999999998888      877788886 8999999999999999997776555544

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.40  E-value=0.0013  Score=56.67  Aligned_cols=114  Identities=17%  Similarity=0.232  Sum_probs=82.8

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 029199           64 GDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYY  143 (197)
Q Consensus        64 g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~  143 (197)
                      +++..|...+++||..+-.+...|..++.+=.+ ....+-|...+++|+.+-|.--..|+.+-.+--.+|+ ..-|.+.|
T Consensus        87 ~e~~RARSv~ERALdvd~r~itLWlkYae~Emk-nk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgN-i~gaRqif  164 (677)
T KOG1915|consen   87 KEIQRARSVFERALDVDYRNITLWLKYAEFEMK-NKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGN-IAGARQIF  164 (677)
T ss_pred             HHHHHHHHHHHHHHhcccccchHHHHHHHHHHh-hhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcc-cHHHHHHH
Confidence            667777777777777777777777777766555 6677777777777777777777777777766666664 67777777


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          144 ERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       144 ~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      ++=+...|+ ..+|......-.+.++.+.|...|+++
T Consensus       165 erW~~w~P~-eqaW~sfI~fElRykeieraR~IYerf  200 (677)
T KOG1915|consen  165 ERWMEWEPD-EQAWLSFIKFELRYKEIERARSIYERF  200 (677)
T ss_pred             HHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            777777775 667777777777777777777777664

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.39  E-value=0.0023  Score=51.17  Aligned_cols=118  Identities=18%  Similarity=0.168  Sum_probs=100.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH-HH
Q 029199           61 GSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQD-RA  139 (197)
Q Consensus        61 ~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~-~A  139 (197)
                      .+...-+.|++..+.++.++|-+-.+|.-+-.++.....+..+-++++...+.-+|+|-.+|...-.+.-.++ +.. .-
T Consensus        54 ~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~-d~s~rE  132 (318)
T KOG0530|consen   54 AKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLG-DPSFRE  132 (318)
T ss_pred             hccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhc-Ccccch
Confidence            3345667899999999999999999998777677775678999999999999999999999999988877777 676 78


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCc
Q 029199          140 ATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSE  179 (197)
Q Consensus       140 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~  179 (197)
                      ++..+.++..+..|..+|..+-++...-+.++.......+
T Consensus       133 Lef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~  172 (318)
T KOG0530|consen  133 LEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADE  172 (318)
T ss_pred             HHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHH
Confidence            8999999999999999999999999998888876544333

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.38  E-value=0.0086  Score=50.54  Aligned_cols=155  Identities=14%  Similarity=0.103  Sum_probs=94.4

Q ss_pred             hhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHH-HHHhCCCCH
Q 029199            6 LSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKK-MVEENPGNP   84 (197)
Q Consensus         6 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~-al~~~P~~~   84 (197)
                      |+.+++.-|.+..+.-..  -+..+.+.+..++++.+...                 .|+.++|++.+.. .....+.++
T Consensus       157 ydamI~Lve~l~~~p~~~--~~~~~~i~~~yafALnRrn~-----------------~gdre~Al~il~~~l~~~~~~~~  217 (374)
T PF13281_consen  157 YDAMIKLVETLEALPTCD--VANQHNIKFQYAFALNRRNK-----------------PGDREKALQILLPVLESDENPDP  217 (374)
T ss_pred             HHHHHHHHHHhhccCccc--hhcchHHHHHHHHHHhhccc-----------------CCCHHHHHHHHHHHHhccCCCCh
Confidence            566777777777764433  45566777777777766322                 4888999999888 556677788


Q ss_pred             HHHHHHHHHHHHh--------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------h
Q 029199           85 LFLSNYAQFLYQS--------KQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVH-------A  149 (197)
Q Consensus        85 ~~~~~la~~l~~~--------~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~-------~  149 (197)
                      +.+..+|.++...        ....++|+..|+++.+++|+. ..=.|++.++...|.+++...+.-.-.++       .
T Consensus       218 d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~k  296 (374)
T PF13281_consen  218 DTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRK  296 (374)
T ss_pred             HHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhh
Confidence            8888888665431        114678899999999988643 44456666666656543332221111111       1


Q ss_pred             C----CCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          150 S----PEDSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       150 ~----p~~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      .    -.+.-.+-.+..+..-.|+++++.+..+++
T Consensus       297 g~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~  331 (374)
T PF13281_consen  297 GSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKA  331 (374)
T ss_pred             ccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            1    112222345555566677777776666654

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=97.27  E-value=0.012  Score=48.92  Aligned_cols=95  Identities=17%  Similarity=0.224  Sum_probs=78.0

Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 029199           70 EEYYKKMVEENPGNPLFLSNYAQFLYQSKQD------------LPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQD  137 (197)
Q Consensus        70 ~~~~~~al~~~P~~~~~~~~la~~l~~~~g~------------~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~  137 (197)
                      ...|++.++.+|+|..+|..+..+--. .-.            .+.-+..|++||+.+|++...+..+-....+.- +.+
T Consensus         5 ~~el~~~v~~~P~di~~Wl~li~~Qd~-~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~-~~~   82 (321)
T PF08424_consen    5 TAELNRRVRENPHDIEAWLELIEFQDE-LFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVW-DSE   82 (321)
T ss_pred             HHHHHHHHHhCcccHHHHHHHHHHHHH-hccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC-CHH
Confidence            356889999999999999999854443 221            356688999999999999999999888888877 578


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 029199          138 RAATYYERAVHASPEDSHVHASYAGFLWE  166 (197)
Q Consensus       138 ~A~~~~~~al~~~p~~~~~~~~la~~~~~  166 (197)
                      +..+-+++++..+|+++.+|..+-.....
T Consensus        83 ~l~~~we~~l~~~~~~~~LW~~yL~~~q~  111 (321)
T PF08424_consen   83 KLAKKWEELLFKNPGSPELWREYLDFRQS  111 (321)
T ss_pred             HHHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence            88999999999999999999877665544

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.27  E-value=0.012  Score=46.85  Aligned_cols=116  Identities=14%  Similarity=0.118  Sum_probs=88.8

Q ss_pred             CCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHHc---
Q 029199           63 GGDSQGVEEYYKKMVEENPGN---PLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGE---ILSQYAKLVWELH---  133 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~P~~---~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~---~~~~lg~~l~~~~---  133 (197)
                      .|++++|++.|+.+....|..   ..+...++...++ .+++++|+...++-+++.|.++.   +.+..|..++..-   
T Consensus        47 ~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk-~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~  125 (254)
T COG4105          47 KGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYK-NGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDV  125 (254)
T ss_pred             cCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHh-cccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCcc
Confidence            599999999999999999887   4578888988888 99999999999999999998775   4555666554311   


Q ss_pred             -CC---HHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHcCCccccccCCCc
Q 029199          134 -ND---QDRAATYYERAVHASPEDSHVH-----------------ASYAGFLWETEEDNDECDAPSE  179 (197)
Q Consensus       134 -~~---~~~A~~~~~~al~~~p~~~~~~-----------------~~la~~~~~~g~~~ea~~~~~~  179 (197)
                       +|   ..+|...|+..++.-|+..-+-                 ...|..|.+-|.+..|..=+++
T Consensus       126 ~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~  192 (254)
T COG4105         126 TRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEE  192 (254)
T ss_pred             ccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence             12   4578888999999999865321                 3566778888887777544444

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.26  E-value=0.0029  Score=46.00  Aligned_cols=59  Identities=17%  Similarity=0.143  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          121 ILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       121 ~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      +...++..+...| ++++|+..+++++..+|.+..+|..+-.++..+|+..+|.+.|+++
T Consensus        64 ~~~~l~~~~~~~~-~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~  122 (146)
T PF03704_consen   64 ALERLAEALLEAG-DYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERY  122 (146)
T ss_dssp             HHHHHHHHHHHTT--HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcc-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence            3445566667767 5999999999999999999999999999999999999999988886

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.24  E-value=0.0018  Score=53.34  Aligned_cols=93  Identities=16%  Similarity=0.081  Sum_probs=79.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 029199           85 LFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDG----EILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASY  160 (197)
Q Consensus        85 ~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~----~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  160 (197)
                      .-+..=|+.+++ ..+|..|+.+|.+.|+..-.|+    ..+.|++-+.+.+|+ |-.|+.-+.+++.++|.+..+++.-
T Consensus        82 en~KeeGN~~fK-~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~N-yRs~l~Dcs~al~~~P~h~Ka~~R~  159 (390)
T KOG0551|consen   82 ENYKEEGNEYFK-EKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGN-YRSALNDCSAALKLKPTHLKAYIRG  159 (390)
T ss_pred             HHHHHHhHHHHH-hhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHhcCcchhhhhhhh
Confidence            345556889998 8999999999999998865444    567889989888896 8999999999999999999999999


Q ss_pred             HHHHHHcCCccccccCCCc
Q 029199          161 AGFLWETEEDNDECDAPSE  179 (197)
Q Consensus       161 a~~~~~~g~~~ea~~~~~~  179 (197)
                      +.|+.++.++++|..+-+.
T Consensus       160 Akc~~eLe~~~~a~nw~ee  178 (390)
T KOG0551|consen  160 AKCLLELERFAEAVNWCEE  178 (390)
T ss_pred             hHHHHHHHHHHHHHHHHhh
Confidence            9999999998887655544

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.22  E-value=0.0032  Score=52.51  Aligned_cols=85  Identities=16%  Similarity=0.068  Sum_probs=68.7

Q ss_pred             cCCCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 029199           60 AGSGGDSQGVEEYYKKMVEENPGNP-LFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDR  138 (197)
Q Consensus        60 ~~~~g~~~~A~~~~~~al~~~P~~~-~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~  138 (197)
                      +.+..|+..|+..++-.+..+.... ..-.-+|.+++. .|++++|+..|+-+...+.-+.+++.+++.+.+-+|. +.+
T Consensus        32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fh-LgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~-Y~e  109 (557)
T KOG3785|consen   32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFH-LGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQ-YIE  109 (557)
T ss_pred             HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHh-hccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHH-HHH
Confidence            4456899999999998887664433 222224767777 9999999999999999888889999999999999996 899


Q ss_pred             HHHHHHHH
Q 029199          139 AATYYERA  146 (197)
Q Consensus       139 A~~~~~~a  146 (197)
                      |.....++
T Consensus       110 A~~~~~ka  117 (557)
T KOG3785|consen  110 AKSIAEKA  117 (557)
T ss_pred             HHHHHhhC
Confidence            98877765

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.22  E-value=0.00084  Score=35.68  Aligned_cols=30  Identities=33%  Similarity=0.479  Sum_probs=14.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 029199           87 LSNYAQFLYQSKQDLPKAEEYYSRAILADPG  117 (197)
Q Consensus        87 ~~~la~~l~~~~g~~~~A~~~~~~al~l~P~  117 (197)
                      ++++|.++.. .|++++|+..|+++++..|+
T Consensus         3 ~~~~a~~~~~-~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    3 LYRLARCYYK-LGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHH-HCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHH-ccCHHHHHHHHHHHHHHCcC
Confidence            3444444443 44455555555554444443

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=97.20  E-value=0.0012  Score=44.49  Aligned_cols=48  Identities=15%  Similarity=0.041  Sum_probs=29.4

Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 029199           70 EEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGD  118 (197)
Q Consensus        70 ~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~  118 (197)
                      +..+++.+..+|+|..+.+.+|..+.. .|++++|++.+-.+++.+|+.
T Consensus         8 ~~al~~~~a~~P~D~~ar~~lA~~~~~-~g~~e~Al~~Ll~~v~~dr~~   55 (90)
T PF14561_consen    8 IAALEAALAANPDDLDARYALADALLA-AGDYEEALDQLLELVRRDRDY   55 (90)
T ss_dssp             HHHHHHHHHHSTT-HHHHHHHHHHHHH-TT-HHHHHHHHHHHHCC-TTC
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCccc
Confidence            455666666677776666666655555 667777777666666666554

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.20  E-value=0.0072  Score=51.06  Aligned_cols=102  Identities=10%  Similarity=0.035  Sum_probs=88.7

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC---HHHH
Q 029199           65 DSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQ--DLPKAEEYYSRAILADPGDGEILSQYAKLVWELHND---QDRA  139 (197)
Q Consensus        65 ~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g--~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~---~~~A  139 (197)
                      -.++-+.+.+.+++.+|+.-.+|+.+-.++.+ .+  ++..-++..+++++.||.|...|...-.+.....+.   ..+-
T Consensus        90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~-~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~E  168 (421)
T KOG0529|consen   90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQK-NPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEE  168 (421)
T ss_pred             hhHHHHHHHHHHHHhCchhHHHHHHHHHHHHh-CCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhH
Confidence            56777899999999999999999999977775 43  479999999999999999999998887777666665   5678


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 029199          140 ATYYERAVHASPEDSHVHASYAGFLWET  167 (197)
Q Consensus       140 ~~~~~~al~~~p~~~~~~~~la~~~~~~  167 (197)
                      +++..+++.-+++|..+|.++..++..+
T Consensus       169 l~ftt~~I~~nfSNYsaWhyRs~lL~~l  196 (421)
T KOG0529|consen  169 LEFTTKLINDNFSNYSAWHYRSLLLSTL  196 (421)
T ss_pred             HHHHHHHHhccchhhhHHHHHHHHHHHh
Confidence            8999999999999999999999998865

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.18  E-value=0.00086  Score=36.96  Aligned_cols=25  Identities=40%  Similarity=0.618  Sum_probs=13.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 029199           87 LSNYAQFLYQSKQDLPKAEEYYSRAI  112 (197)
Q Consensus        87 ~~~la~~l~~~~g~~~~A~~~~~~al  112 (197)
                      |.+||.++.. .|++++|+++|+++|
T Consensus         2 l~~Lg~~~~~-~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    2 LNNLGRIYRQ-QGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHH-CT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-cCCHHHHHHHHHHHH
Confidence            4455544444 566666666666533

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=97.16  E-value=0.0044  Score=59.21  Aligned_cols=141  Identities=13%  Similarity=0.109  Sum_probs=119.9

Q ss_pred             chhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCC--
Q 029199            5 ALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPG--   82 (197)
Q Consensus         5 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~--   82 (197)
                      +|..-.++.+|.+.|+.+.++......+|...|-.+-.                    ..+-+.|...+++|++.-|.  
T Consensus      1539 iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~--------------------~ne~~aa~~lL~rAL~~lPk~e 1598 (1710)
T KOG1070|consen 1539 IYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLR--------------------QNEAEAARELLKRALKSLPKQE 1598 (1710)
T ss_pred             HHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhc--------------------ccHHHHHHHHHHHHHhhcchhh
Confidence            46677788899999999999988889999988877766                    36668899999999999999  


Q ss_pred             CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHH
Q 029199           83 NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHAS--PEDSHVHASY  160 (197)
Q Consensus        83 ~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l  160 (197)
                      +..+....+.+-|+ .|+.+.++..|+-.+.-+|.-.++|.-|...-...+ +.+.....|+|++.+.  |.....+|+.
T Consensus      1599 Hv~~IskfAqLEFk-~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~-~~~~vR~lfeRvi~l~l~~kkmKfffKk 1676 (1710)
T KOG1070|consen 1599 HVEFISKFAQLEFK-YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHG-DIKYVRDLFERVIELKLSIKKMKFFFKK 1676 (1710)
T ss_pred             hHHHHHHHHHHHhh-cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccC-CHHHHHHHHHHHHhcCCChhHhHHHHHH
Confidence            88888889977787 999999999999999999999999999999988877 4799999999999876  5555666665


Q ss_pred             HHHHHHc
Q 029199          161 AGFLWET  167 (197)
Q Consensus       161 a~~~~~~  167 (197)
                      =.-|.+.
T Consensus      1677 wLeyEk~ 1683 (1710)
T KOG1070|consen 1677 WLEYEKS 1683 (1710)
T ss_pred             HHHHHHh
Confidence            5555554

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=97.16  E-value=0.00087  Score=52.56  Aligned_cols=57  Identities=19%  Similarity=0.262  Sum_probs=52.4

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 029199           63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGE  120 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~  120 (197)
                      .++.+.|.+.|.+++.+.|++...|+.+| .+..+.|+++.|.+.|++.++++|.+..
T Consensus         8 ~~D~~aaaely~qal~lap~w~~gwfR~g-~~~ekag~~daAa~a~~~~L~ldp~D~~   64 (287)
T COG4976           8 SGDAEAAAELYNQALELAPEWAAGWFRLG-EYTEKAGEFDAAAAAYEEVLELDPEDHG   64 (287)
T ss_pred             cCChHHHHHHHHHHhhcCchhhhhhhhcc-hhhhhcccHHHHHHHHHHHHcCCccccc
Confidence            58999999999999999999999999999 6666699999999999999999998754

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.10  E-value=0.004  Score=37.58  Aligned_cols=39  Identities=21%  Similarity=0.203  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 029199           87 LSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYA  126 (197)
Q Consensus        87 ~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg  126 (197)
                      ++.+|..+++ .|++++|..+.+.+|+.+|+|..+.....
T Consensus         4 lY~lAig~yk-l~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~   42 (53)
T PF14853_consen    4 LYYLAIGHYK-LGEYEKARRYCDALLEIEPDNRQAQSLKE   42 (53)
T ss_dssp             HHHHHHHHHH-TT-HHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred             HHHHHHHHHH-hhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence            3445544555 66666666666666666666666654443

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.05  E-value=0.0018  Score=34.37  Aligned_cols=33  Identities=27%  Similarity=0.562  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 029199          120 EILSQYAKLVWELHNDQDRAATYYERAVHASPED  153 (197)
Q Consensus       120 ~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~  153 (197)
                      ++++++|.++...| ++++|++.|++.++..|++
T Consensus         1 ~a~~~~a~~~~~~g-~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    1 DALYRLARCYYKLG-DYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHHC-HHHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHcc-CHHHHHHHHHHHHHHCcCC
Confidence            47899999999987 5999999999999999974

>smart00028 TPR Tetratricopeptide repeats

Probab=97.04  E-value=0.0012  Score=33.72  Aligned_cols=30  Identities=30%  Similarity=0.492  Sum_probs=14.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 029199          121 ILSQYAKLVWELHNDQDRAATYYERAVHASP  151 (197)
Q Consensus       121 ~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p  151 (197)
                      +++++|.++...++ +++|..+|+++++++|
T Consensus         3 ~~~~~a~~~~~~~~-~~~a~~~~~~~~~~~~   32 (34)
T smart00028        3 ALYNLGNAYLKLGD-YDEALEYYEKALELDP   32 (34)
T ss_pred             HHHHHHHHHHHHhh-HHHHHHHHHHHHccCC
Confidence            34444555444443 4555555555554444

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>smart00028 TPR Tetratricopeptide repeats

Probab=96.97  E-value=0.0018  Score=33.08  Aligned_cols=33  Identities=30%  Similarity=0.416  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 029199           85 LFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGD  118 (197)
Q Consensus        85 ~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~  118 (197)
                      .+|+++|.++.. .+++++|+.+|+++++++|++
T Consensus         2 ~~~~~~a~~~~~-~~~~~~a~~~~~~~~~~~~~~   34 (34)
T smart00028        2 EALYNLGNAYLK-LGDYDEALEYYEKALELDPNN   34 (34)
T ss_pred             hHHHHHHHHHHH-HhhHHHHHHHHHHHHccCCCC
Confidence            468889988777 999999999999999998864

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.97  E-value=0.003  Score=52.32  Aligned_cols=122  Identities=16%  Similarity=0.029  Sum_probs=95.0

Q ss_pred             CCcccCCCCCHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 029199           56 GFYPAGSGGDSQGVEEYYKKMVEE-NPGN---PLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWE  131 (197)
Q Consensus        56 ~~~~~~~~g~~~~A~~~~~~al~~-~P~~---~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~  131 (197)
                      .--.+.+.|+...-...+++.+-. +|+-   +-++-.++-.+.. .|-+++|++.-++++++||.+..+....+-++.-
T Consensus       143 sh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E-~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem  221 (491)
T KOG2610|consen  143 SHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEE-CGIYDDAEKQADRALQINRFDCWASHAKAHVLEM  221 (491)
T ss_pred             hhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHH-hccchhHHHHHHhhccCCCcchHHHHHHHHHHHh
Confidence            334556679999899999999887 6666   5555566644455 8999999999999999999999999999999887


Q ss_pred             HcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCccccccCCCc
Q 029199          132 LHNDQDRAATYYERAVHASPE----DSHVHASYAGFLWETEEDNDECDAPSE  179 (197)
Q Consensus       132 ~~~~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~ea~~~~~~  179 (197)
                      .++ ++++.+...+--..-..    -..-|...+.++.+.++++.++..|.+
T Consensus       222 ~~r-~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~  272 (491)
T KOG2610|consen  222 NGR-HKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR  272 (491)
T ss_pred             cch-hhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence            776 89999988775332111    123367788999999999999888876

>PRK10941 hypothetical protein; Provisional

Probab=96.91  E-value=0.0052  Score=49.76  Aligned_cols=68  Identities=12%  Similarity=-0.050  Sum_probs=60.5

Q ss_pred             ccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 029199           59 PAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAK  127 (197)
Q Consensus        59 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~  127 (197)
                      .+...++++.|+++.+..+.++|+++.-+..+|.++.. +|.+..|...++.-++..|++|.+..-...
T Consensus       190 ~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~q-L~c~~~A~~DL~~fl~~~P~dp~a~~ik~q  257 (269)
T PRK10941        190 ALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQ-LDCEHVALSDLSYFVEQCPEDPISEMIRAQ  257 (269)
T ss_pred             HHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHhCCCchhHHHHHHH
Confidence            44567999999999999999999999999999966665 999999999999999999999998765543

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=96.90  E-value=0.046  Score=44.28  Aligned_cols=98  Identities=14%  Similarity=0.131  Sum_probs=75.5

Q ss_pred             CCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--
Q 029199           64 GDSQGVEEYYKKMVEENPGN-PLFLSNYAQFLYQSKQ--------DLPKAEEYYSRAILADPGDGEILSQYAKLVWEL--  132 (197)
Q Consensus        64 g~~~~A~~~~~~al~~~P~~-~~~~~~la~~l~~~~g--------~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~--  132 (197)
                      .+..+|.++|+++.+..-.. ..+.+.++.++..  |        +..+|+..|.++-...  ++.+.+++|.+|..-  
T Consensus       127 ~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~--g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~G  202 (292)
T COG0790         127 LDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLS--GLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLG  202 (292)
T ss_pred             cCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHc--ChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCC
Confidence            48899999999999886444 3447777854443  4        3447999999988776  888999999877652  


Q ss_pred             -cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 029199          133 -HNDQDRAATYYERAVHASPEDSHVHASYAGFLWETE  168 (197)
Q Consensus       133 -~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  168 (197)
                       .+++++|..+|.++-+...  ...+++++ ++...|
T Consensus       203 v~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g  236 (292)
T COG0790         203 VPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG  236 (292)
T ss_pred             CCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence             2368899999999988776  88999999 777666

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.88  E-value=0.0058  Score=53.36  Aligned_cols=119  Identities=14%  Similarity=0.048  Sum_probs=92.0

Q ss_pred             HHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHH---
Q 029199            9 EVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPL---   85 (197)
Q Consensus         9 ~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~---   85 (197)
                      .+.+..+...+....++.|+++-..+..|-....                    .|+.++|++.|++++........   
T Consensus       246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~--------------------~g~~~~Ai~~~~~a~~~q~~~~Ql~~  305 (468)
T PF10300_consen  246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERL--------------------KGNLEEAIESFERAIESQSEWKQLHH  305 (468)
T ss_pred             CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH--------------------hcCHHHHHHHHHHhccchhhHHhHHH
Confidence            4556777778888888999999888888877665                    49999999999999864444333   


Q ss_pred             -HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHh
Q 029199           86 -FLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDG-EILSQYAKLVWELHNDQ-------DRAATYYERAVHA  149 (197)
Q Consensus        86 -~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~-~~~~~lg~~l~~~~~~~-------~~A~~~~~~al~~  149 (197)
                       .++.++.++.. +.++++|..+|.+.++.+.-+. ...|..|.++...++ .       ++|.++|.++-..
T Consensus       306 l~~~El~w~~~~-~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~-~~~~~~~~~~a~~l~~~vp~l  376 (468)
T PF10300_consen  306 LCYFELAWCHMF-QHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGR-EEEAKEHKKEAEELFRKVPKL  376 (468)
T ss_pred             HHHHHHHHHHHH-HchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhcc-chhhhhhHHHHHHHHHHHHHH
Confidence             46678866666 8999999999999999766543 455666778888775 6       7888888887554

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=96.88  E-value=0.013  Score=46.69  Aligned_cols=83  Identities=16%  Similarity=0.062  Sum_probs=67.8

Q ss_pred             CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---H
Q 029199           83 NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDG---EILSQYAKLVWELHNDQDRAATYYERAVHASPEDSH---V  156 (197)
Q Consensus        83 ~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~---~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~---~  156 (197)
                      .+..|++-|..... .|++++|+..|+++...+|.++   .+...++.++++.+ ++++|+..+++-+++.|+++.   +
T Consensus        33 p~~~LY~~g~~~L~-~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~-~y~~A~~~~drFi~lyP~~~n~dY~  110 (254)
T COG4105          33 PASELYNEGLTELQ-KGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNG-EYDLALAYIDRFIRLYPTHPNADYA  110 (254)
T ss_pred             CHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHhCCCCCChhHH
Confidence            45567777766666 8999999999999999998766   67888999999977 599999999999999988775   4


Q ss_pred             HHHHHHHHHHc
Q 029199          157 HASYAGFLWET  167 (197)
Q Consensus       157 ~~~la~~~~~~  167 (197)
                      ++-.|.++...
T Consensus       111 ~YlkgLs~~~~  121 (254)
T COG4105         111 YYLKGLSYFFQ  121 (254)
T ss_pred             HHHHHHHHhcc
Confidence            66667665443

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=96.87  E-value=0.034  Score=37.35  Aligned_cols=71  Identities=11%  Similarity=0.026  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCcccccc
Q 029199          104 AEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPED--SHVHASYAGFLWETEEDNDECD  175 (197)
Q Consensus       104 A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~ea~~  175 (197)
                      .+..+++.++.+|+|+.+.+.+|..+...| ++++|++.+-.+++.+|+.  ..+.-.+-.++..+|..+.-..
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g-~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~   79 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAG-DYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVS   79 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT--HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHH
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHH
Confidence            467789999999999999999999999977 5999999999999998765  7788888888888888665433

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=96.87  E-value=0.0092  Score=35.98  Aligned_cols=45  Identities=13%  Similarity=0.164  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 029199          120 EILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLW  165 (197)
Q Consensus       120 ~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  165 (197)
                      +.++.++..++++| ++++|..+.+.+|+++|+|..+..-...+-.
T Consensus         2 d~lY~lAig~ykl~-~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~   46 (53)
T PF14853_consen    2 DCLYYLAIGHYKLG-EYEKARRYCDALLEIEPDNRQAQSLKELIED   46 (53)
T ss_dssp             HHHHHHHHHHHHTT--HHHHHHHHHHHHHHTTS-HHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhh-hHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Confidence            45788899999988 5999999999999999999998766555443

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=96.85  E-value=0.038  Score=41.08  Aligned_cols=100  Identities=16%  Similarity=0.105  Sum_probs=79.0

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 029199           63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATY  142 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~  142 (197)
                      .++.+.+...+...--+.|+.+.+-..-|.++.. .|++.+|+..++.+....|..|.+.-.++.||+.++ |. .=..+
T Consensus        23 ~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~-r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~-D~-~Wr~~   99 (160)
T PF09613_consen   23 LGDPDDAEALLDALRVLRPEFPELDLFDGWLHIV-RGDWDDALRLLRELEERAPGFPYAKALLALCLYALG-DP-SWRRY   99 (160)
T ss_pred             cCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHH-hCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcC-Ch-HHHHH
Confidence            4788999999999999999999999988866665 999999999999999999999999999999998866 53 44555


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHH
Q 029199          143 YERAVHASPEDSHVHASYAGFLWE  166 (197)
Q Consensus       143 ~~~al~~~p~~~~~~~~la~~~~~  166 (197)
                      -..+++..+ ++.+..-...++..
T Consensus       100 A~evle~~~-d~~a~~Lv~~Ll~~  122 (160)
T PF09613_consen  100 ADEVLESGA-DPDARALVRALLAR  122 (160)
T ss_pred             HHHHHhcCC-ChHHHHHHHHHHHh
Confidence            566666555 56665444444433

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.83  E-value=0.0021  Score=35.36  Aligned_cols=29  Identities=24%  Similarity=0.469  Sum_probs=23.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 029199          121 ILSQYAKLVWELHNDQDRAATYYERAVHAS  150 (197)
Q Consensus       121 ~~~~lg~~l~~~~~~~~~A~~~~~~al~~~  150 (197)
                      ++.++|.++...| ++++|+++|+++|.+.
T Consensus         1 al~~Lg~~~~~~g-~~~~Ai~~y~~aL~l~   29 (36)
T PF13176_consen    1 ALNNLGRIYRQQG-DYEKAIEYYEQALALA   29 (36)
T ss_dssp             HHHHHHHHHHHCT--HHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcC-CHHHHHHHHHHHHHhc
Confidence            4789999999988 5999999999966543

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=96.82  E-value=0.0045  Score=51.75  Aligned_cols=116  Identities=14%  Similarity=0.018  Sum_probs=90.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC----------CHHHHHH
Q 029199           61 GSGGDSQGVEEYYKKMVEENPGNP------LFLSNYAQFLYQSKQDLPKAEEYYSRAILADPG----------DGEILSQ  124 (197)
Q Consensus        61 ~~~g~~~~A~~~~~~al~~~P~~~------~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~----------~~~~~~~  124 (197)
                      ...+.+++++++|++|+++..++.      .+...||.++-. ..++++|.-...+|+++-..          ...+++.
T Consensus       133 lgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~-l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyh  211 (518)
T KOG1941|consen  133 LGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQ-LKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYH  211 (518)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHH-HHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHH
Confidence            445889999999999999865543      367788966555 99999999999999887432          1256778


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCccccccCCC
Q 029199          125 YAKLVWELHNDQDRAATYYERAVHAS------PEDSHVHASYAGFLWETEEDNDECDAPS  178 (197)
Q Consensus       125 lg~~l~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~ea~~~~~  178 (197)
                      +++.|..+|+ ...|.++.+.+.++.      |-......-+|.+|...|+.+.+-.-|+
T Consensus       212 maValR~~G~-LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe  270 (518)
T KOG1941|consen  212 MAVALRLLGR-LGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYE  270 (518)
T ss_pred             HHHHHHHhcc-cccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHH
Confidence            8888888886 899999999998764      3455667889999999999988644443

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=96.81  E-value=0.0076  Score=50.04  Aligned_cols=157  Identities=13%  Similarity=0.060  Sum_probs=107.7

Q ss_pred             HhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 029199           15 ALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFL   94 (197)
Q Consensus        15 a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l   94 (197)
                      ...+|+.....+|.|.+.|+.-----+..-.....        ..-....-.+.-+..|++||+.+|++...+..+-.+.
T Consensus         4 r~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~--------~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~   75 (321)
T PF08424_consen    4 RTAELNRRVRENPHDIEAWLELIEFQDELFRLQSS--------SKAERRALAERKLSILERALKHNPDSERLLLGYLEEG   75 (321)
T ss_pred             HHHHHHHHHHhCcccHHHHHHHHHHHHHhcccccc--------chhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            44566667778999999988743222221100000        0001113356778999999999999999998877666


Q ss_pred             HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-cC-CHHHHHHHHHHHHHhCC----C--------------CH
Q 029199           95 YQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWEL-HN-DQDRAATYYERAVHASP----E--------------DS  154 (197)
Q Consensus        95 ~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~-~~-~~~~A~~~~~~al~~~p----~--------------~~  154 (197)
                      .+ ..+.++-.+-+++++..+|+++.+|..+-...... .+ .+++....|.++|+.-.    .              -.
T Consensus        76 ~~-~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l  154 (321)
T PF08424_consen   76 EK-VWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFML  154 (321)
T ss_pred             HH-hCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHH
Confidence            66 77889999999999999999999998886544331 11 25677777777765421    1              11


Q ss_pred             HHHHHHHHHHHHcCCccccccCCCcc
Q 029199          155 HVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       155 ~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      .++.++...+.+.|-.+.|...+|.+
T Consensus       155 ~v~~r~~~fl~~aG~~E~Ava~~Qa~  180 (321)
T PF08424_consen  155 YVFLRLCRFLRQAGYTERAVALWQAL  180 (321)
T ss_pred             HHHHHHHHHHHHCCchHHHHHHHHHH
Confidence            35678888899999999998777774

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=96.76  E-value=0.0076  Score=52.61  Aligned_cols=92  Identities=20%  Similarity=0.098  Sum_probs=78.7

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 029199           62 SGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSK--QDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRA  139 (197)
Q Consensus        62 ~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~--g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A  139 (197)
                      +.+....++..|.++++.-|+....+-+++.++.++.  |+.-.|+.....|+++||....+|+.++.++.++++ +.+|
T Consensus       386 y~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r-~~ea  464 (758)
T KOG1310|consen  386 YESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTR-YLEA  464 (758)
T ss_pred             hhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhh-HHHh
Confidence            3467788999999999999999999999987776532  577789999999999999999999999999999997 8999


Q ss_pred             HHHHHHHHHhCCCCH
Q 029199          140 ATYYERAVHASPEDS  154 (197)
Q Consensus       140 ~~~~~~al~~~p~~~  154 (197)
                      +++...+....|.+.
T Consensus       465 l~~~~alq~~~Ptd~  479 (758)
T KOG1310|consen  465 LSCHWALQMSFPTDV  479 (758)
T ss_pred             hhhHHHHhhcCchhh
Confidence            998877777777544

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.73  E-value=0.012  Score=47.79  Aligned_cols=78  Identities=14%  Similarity=0.127  Sum_probs=56.6

Q ss_pred             CCHHHHHHHH-HHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 029199           64 GDSQGVEEYY-KKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATY  142 (197)
Q Consensus        64 g~~~~A~~~~-~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~  142 (197)
                      ...+..++.+ .+.+..   ..+.-+.-+.-... .|++.+|...|..++..+|.+.++...++.++...|. .+.|...
T Consensus       116 ~qPesqlr~~ld~~~~~---~~e~~~~~~~~~~~-~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~-~e~A~~i  190 (304)
T COG3118         116 AQPESQLRQFLDKVLPA---EEEEALAEAKELIE-AEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGD-VEAAQAI  190 (304)
T ss_pred             CCcHHHHHHHHHHhcCh---HHHHHHHHhhhhhh-ccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCC-hHHHHHH
Confidence            4555555444 444333   22223333434555 8999999999999999999999999999999999884 8888887


Q ss_pred             HHHH
Q 029199          143 YERA  146 (197)
Q Consensus       143 ~~~a  146 (197)
                      +...
T Consensus       191 L~~l  194 (304)
T COG3118         191 LAAL  194 (304)
T ss_pred             HHhC
Confidence            7664

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=96.67  E-value=0.035  Score=48.26  Aligned_cols=95  Identities=18%  Similarity=0.130  Sum_probs=70.3

Q ss_pred             CCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHcCC----
Q 029199           63 GGDSQGVEEYYKKMVEENPG--NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILA-DPGDGEILSQYAKLVWELHND----  135 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~P~--~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l-~P~~~~~~~~lg~~l~~~~~~----  135 (197)
                      .|+.++|++.++..++.+|.  +..++.+|..++.. .+.+.++...+.+-=.+ -|+.+.+.+..+.+-.+.-.|    
T Consensus       272 lGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLe-lq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~  350 (539)
T PF04184_consen  272 LGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLE-LQAYADVQALLAKYDDISLPKSATICYTAALLKARAVGDKFSP  350 (539)
T ss_pred             hCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHh-cCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhhccccCc
Confidence            49999999999999998876  45588888888888 89999998888885333 377788877777554332222    


Q ss_pred             -----------HHHHHHHHHHHHHhCCCCHHHHH
Q 029199          136 -----------QDRAATYYERAVHASPEDSHVHA  158 (197)
Q Consensus       136 -----------~~~A~~~~~~al~~~p~~~~~~~  158 (197)
                                 -..|.+.+.+|++.||.-|..+.
T Consensus       351 e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLL  384 (539)
T PF04184_consen  351 EAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLL  384 (539)
T ss_pred             hhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhh
Confidence                       12467889999999987775543

The molecular function of this protein is uncertain.

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=96.64  E-value=0.17  Score=37.62  Aligned_cols=85  Identities=16%  Similarity=-0.022  Sum_probs=73.4

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 029199           86 FLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLW  165 (197)
Q Consensus        86 ~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  165 (197)
                      .+..+..+-.. .++.+.+...+...--+.|..+++...-|+++...+ ++.+|+..|+......|..+.+---++.|+.
T Consensus        12 gLie~~~~al~-~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~-~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~   89 (160)
T PF09613_consen   12 GLIEVLSVALR-LGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRG-DWDDALRLLRELEERAPGFPYAKALLALCLY   89 (160)
T ss_pred             HHHHHHHHHHc-cCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhC-CHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence            34444434444 789999999999999999999999999999999977 5999999999999999999999999999999


Q ss_pred             HcCCccc
Q 029199          166 ETEEDND  172 (197)
Q Consensus       166 ~~g~~~e  172 (197)
                      .+|+.+-
T Consensus        90 ~~~D~~W   96 (160)
T PF09613_consen   90 ALGDPSW   96 (160)
T ss_pred             HcCChHH
Confidence            9988765

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.62  E-value=0.022  Score=43.74  Aligned_cols=85  Identities=13%  Similarity=0.137  Sum_probs=36.9

Q ss_pred             CCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 029199           64 GDSQGVEEYYKKMVEENPGN---PLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAA  140 (197)
Q Consensus        64 g~~~~A~~~~~~al~~~P~~---~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~  140 (197)
                      |++++|+..++.++..--+.   +.+-.+|+.+... +|++++|+..++.... +.-.+......|.++...| +.++|+
T Consensus       103 ~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q-~~k~D~AL~~L~t~~~-~~w~~~~~elrGDill~kg-~k~~Ar  179 (207)
T COG2976         103 NNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQ-QKKADAALKTLDTIKE-ESWAAIVAELRGDILLAKG-DKQEAR  179 (207)
T ss_pred             ccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHH-hhhHHHHHHHHhcccc-ccHHHHHHHHhhhHHHHcC-chHHHH
Confidence            55555555555544321111   1123344544444 5555555554443321 1111222334455555544 245555


Q ss_pred             HHHHHHHHhCC
Q 029199          141 TYYERAVHASP  151 (197)
Q Consensus       141 ~~~~~al~~~p  151 (197)
                      ..|++++...+
T Consensus       180 ~ay~kAl~~~~  190 (207)
T COG2976         180 AAYEKALESDA  190 (207)
T ss_pred             HHHHHHHHccC
Confidence            55555555543

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.62  E-value=0.017  Score=45.91  Aligned_cols=115  Identities=17%  Similarity=0.171  Sum_probs=82.6

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHH------HHHHHHHHHhcCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHH
Q 029199           63 GGDSQGVEEYYKKMVEENPGNPLFL------SNYAQFLYQSKQDLPKAEEYYSRAILAD-----PGDGEILSQYAKLVWE  131 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~P~~~~~~------~~la~~l~~~~g~~~~A~~~~~~al~l~-----P~~~~~~~~lg~~l~~  131 (197)
                      .+++++|..++.++++-..++...|      -..+ .+.+.+..+.++..+|++|..+.     |+-+..-...+--..+
T Consensus        44 Ak~feKakdcLlkA~~~yEnnrslfhAAKayEqaa-mLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~le  122 (308)
T KOG1585|consen   44 AKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAA-MLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALE  122 (308)
T ss_pred             hccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh
Confidence            5899999999999997665553332      2334 44444899999999999998873     5555544444434455


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCccccccCCCc
Q 029199          132 LHNDQDRAATYYERAVHASPEDS------HVHASYAGFLWETEEDNDECDAPSE  179 (197)
Q Consensus       132 ~~~~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~ea~~~~~~  179 (197)
                      .- +.++|++.|++++.+--...      +.+-..+.++.++.+++|+...+.+
T Consensus       123 nv-~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lK  175 (308)
T KOG1585|consen  123 NV-KPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLK  175 (308)
T ss_pred             cC-CHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHH
Confidence            35 48999999999998753322      3456778889999999998665555

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=96.61  E-value=0.03  Score=38.98  Aligned_cols=87  Identities=15%  Similarity=0.192  Sum_probs=65.8

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 029199           62 SGGDSQGVEEYYKKMVEENPGNPL---FLSNYAQFLYQSKQ-----------DLPKAEEYYSRAILADPGDGEILSQYAK  127 (197)
Q Consensus        62 ~~g~~~~A~~~~~~al~~~P~~~~---~~~~la~~l~~~~g-----------~~~~A~~~~~~al~l~P~~~~~~~~lg~  127 (197)
                      ..|++-+|++..+..+...+++..   .+..-|.+++. +.           -.-.++++|.++..+.|+.+..++.+|.
T Consensus         8 ~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~-lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~~la~   86 (111)
T PF04781_consen    8 ARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYK-LAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLFELAS   86 (111)
T ss_pred             HccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHH-HHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHHHHHH
Confidence            369999999999999999998874   44455655544 22           1235789999999999999888888887


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhC
Q 029199          128 LVWELHNDQDRAATYYERAVHAS  150 (197)
Q Consensus       128 ~l~~~~~~~~~A~~~~~~al~~~  150 (197)
                      -+-... +|+++..-.+++|.+.
T Consensus        87 ~l~s~~-~Ykk~v~kak~~Lsv~  108 (111)
T PF04781_consen   87 QLGSVK-YYKKAVKKAKRGLSVT  108 (111)
T ss_pred             HhhhHH-HHHHHHHHHHHHhccc
Confidence            655544 5888888888888763

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=96.48  E-value=0.038  Score=46.71  Aligned_cols=109  Identities=16%  Similarity=0.172  Sum_probs=83.2

Q ss_pred             CCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHh---cCCHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHHH---
Q 029199           64 GDSQGVEEYYKKMVEE----NPGNPLFLSNYAQFLYQS---KQDLPKAEEYYSR-AILADPGDGEILSQYAKLVWEL---  132 (197)
Q Consensus        64 g~~~~A~~~~~~al~~----~P~~~~~~~~la~~l~~~---~g~~~~A~~~~~~-al~l~P~~~~~~~~lg~~l~~~---  132 (197)
                      .+|+.-++..+..-.+    -++.+.+.+.+| +...+   .|+.++|++.+.. .....+.+++++...|.+|-..   
T Consensus       155 qdydamI~Lve~l~~~p~~~~~~~~~i~~~ya-fALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~  233 (374)
T PF13281_consen  155 QDYDAMIKLVETLEALPTCDVANQHNIKFQYA-FALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLE  233 (374)
T ss_pred             hhHHHHHHHHHHhhccCccchhcchHHHHHHH-HHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHH
Confidence            7889888888887666    456677777788 44444   7999999999999 5566789999999999876421   


Q ss_pred             -----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccc
Q 029199          133 -----HNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDEC  174 (197)
Q Consensus       133 -----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~  174 (197)
                           ....++|+.+|.++.+++|+ ...=.|++.++...|...+..
T Consensus       234 s~~~d~~~ldkAi~~Y~kgFe~~~~-~Y~GIN~AtLL~~~g~~~~~~  279 (374)
T PF13281_consen  234 SNFTDRESLDKAIEWYRKGFEIEPD-YYSGINAATLLMLAGHDFETS  279 (374)
T ss_pred             cCccchHHHHHHHHHHHHHHcCCcc-ccchHHHHHHHHHcCCcccch
Confidence                 11378999999999999975 444567788888888755543

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=96.45  E-value=0.041  Score=46.62  Aligned_cols=104  Identities=13%  Similarity=0.097  Sum_probs=86.8

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 029199           67 QGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQ-----------DLPKAEEYYSRAILADPGDGEILSQYAKLVWELHND  135 (197)
Q Consensus        67 ~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g-----------~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~  135 (197)
                      .++++.=.+.+..+|+...+|+..-.++...+-           -.++-+.....+++.+|++..+|+.+.+++.+....
T Consensus        46 ~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~  125 (421)
T KOG0529|consen   46 EEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHS  125 (421)
T ss_pred             hHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCc
Confidence            578888889999999999999866534443233           456678888999999999999999999999887765


Q ss_pred             -HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc
Q 029199          136 -QDRAATYYERAVHASPEDSHVHASYAGFLWETEED  170 (197)
Q Consensus       136 -~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  170 (197)
                       +..-++.++++++.||.|..+|..+-.+.....+.
T Consensus       126 ~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~  161 (421)
T KOG0529|consen  126 DWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERS  161 (421)
T ss_pred             hHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcc
Confidence             88999999999999999999999988888776555

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=96.41  E-value=0.018  Score=49.99  Aligned_cols=64  Identities=16%  Similarity=0.362  Sum_probs=55.8

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 029199           64 GDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAK  127 (197)
Q Consensus        64 g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~  127 (197)
                      +.+.+--+.|.+++..+|+++..|..-+...+...-+.+.|...|.++|+.+|++|..|.-+=.
T Consensus       119 ~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~eyfr  182 (568)
T KOG2396|consen  119 KTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKEYFR  182 (568)
T ss_pred             cchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHHHHH
Confidence            5577888999999999999999999888888874455999999999999999999999876543

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.33  E-value=0.063  Score=42.50  Aligned_cols=109  Identities=17%  Similarity=0.104  Sum_probs=74.6

Q ss_pred             ccCCCCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH------HHHHHH
Q 029199           59 PAGSGGDSQGVEEYYKKMVEENPGNPL------FLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGE------ILSQYA  126 (197)
Q Consensus        59 ~~~~~g~~~~A~~~~~~al~~~P~~~~------~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~------~~~~lg  126 (197)
                      .+....+..+|+.++++++++..+-..      .+..+|.++-....++++|+.+|+++-+....+-.      .+..-+
T Consensus        82 ~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA  161 (288)
T KOG1586|consen   82 NCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVA  161 (288)
T ss_pred             HHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHH
Confidence            455568999999999999998766543      34477866665457999999999999876543221      122233


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH-------HHHHHHHHHcC
Q 029199          127 KLVWELHNDQDRAATYYERAVHASPEDSHVH-------ASYAGFLWETE  168 (197)
Q Consensus       127 ~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~-------~~la~~~~~~g  168 (197)
                      ..-.+++ ++.+|++.|++..+..-+|+..-       +.-|.|+.-..
T Consensus       162 ~yaa~le-qY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~  209 (288)
T KOG1586|consen  162 QYAAQLE-QYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKA  209 (288)
T ss_pred             HHHHHHH-HHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcc
Confidence            3344556 48999999999988877776543       44556655533

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.32  E-value=0.047  Score=43.21  Aligned_cols=93  Identities=18%  Similarity=0.140  Sum_probs=63.6

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------C
Q 029199           86 FLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEI------LSQYAKLVWELHNDQDRAATYYERAVHASPE------D  153 (197)
Q Consensus        86 ~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~------~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~------~  153 (197)
                      .+..-+.+ |+ ..+..+|+.++++++++.-+-...      +..+|.+|-.--.++++|+.+|+++-+-...      -
T Consensus        76 ~YveA~~c-yk-k~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssA  153 (288)
T KOG1586|consen   76 TYVEAANC-YK-KVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSA  153 (288)
T ss_pred             HHHHHHHH-hh-ccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhH
Confidence            34444433 44 469999999999999886443322      2356666544324699999999999766432      2


Q ss_pred             HHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          154 SHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       154 ~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      -..+...+..-..+++|.+|++.|+++
T Consensus       154 NKC~lKvA~yaa~leqY~~Ai~iyeqv  180 (288)
T KOG1586|consen  154 NKCLLKVAQYAAQLEQYSKAIDIYEQV  180 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            234667777788889999999998876

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=96.23  E-value=0.0071  Score=47.59  Aligned_cols=56  Identities=25%  Similarity=0.281  Sum_probs=51.8

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 029199           98 KQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDS  154 (197)
Q Consensus        98 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~  154 (197)
                      .++.+.|.+.|.+++.+-|....-|+.+|...-+.| +++.|.+.|++.++++|++.
T Consensus         8 ~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag-~~daAa~a~~~~L~ldp~D~   63 (287)
T COG4976           8 SGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAG-EFDAAAAAYEEVLELDPEDH   63 (287)
T ss_pred             cCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcc-cHHHHHHHHHHHHcCCcccc
Confidence            789999999999999999999999999998877767 59999999999999999764

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=96.21  E-value=0.12  Score=42.73  Aligned_cols=111  Identities=20%  Similarity=0.251  Sum_probs=84.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-C-----------------
Q 029199           61 GSGGDSQGVEEYYKKMVEENPG----NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPG-D-----------------  118 (197)
Q Consensus        61 ~~~g~~~~A~~~~~~al~~~P~----~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~-~-----------------  118 (197)
                      ...|.++.|...+.++...++.    .+.+.+..+.+++. .|+..+|+..++..+..... +                 
T Consensus       157 Rk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~-~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (352)
T PF02259_consen  157 RKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWA-QGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESL  235 (352)
T ss_pred             HHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHH-cCCHHHHHHHHHHHHHHHhhhccccccHHHHhhcccccc
Confidence            4459999999999999887622    46777888989998 99999999999988882111 1                 


Q ss_pred             ----------------HHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccc
Q 029199          119 ----------------GEILSQYAKLVWEL-----HNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDND  172 (197)
Q Consensus       119 ----------------~~~~~~lg~~l~~~-----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~e  172 (197)
                                      ..++..+|......     ....+++...|..++..+|+...+|+.+|..+.+.=+.+.
T Consensus       236 ~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~  310 (352)
T PF02259_consen  236 EVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDP  310 (352)
T ss_pred             ccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhh
Confidence                            13344455555555     1247889999999999999999999999999887744443

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=96.06  E-value=0.03  Score=44.92  Aligned_cols=112  Identities=13%  Similarity=0.082  Sum_probs=78.1

Q ss_pred             HhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 029199           15 ALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFL   94 (197)
Q Consensus        15 a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l   94 (197)
                      |+..-...+..+|.+-.+|.-+-..+..+                   ..+..+-+.++.+.++.+|.+-.+|..+-.++
T Consensus        62 Al~LT~d~i~lNpAnYTVW~yRr~iL~~l-------------------~~dL~~El~~l~eI~e~npKNYQvWHHRr~iv  122 (318)
T KOG0530|consen   62 ALQLTEDAIRLNPANYTVWQYRRVILRHL-------------------MSDLNKELEYLDEIIEDNPKNYQVWHHRRVIV  122 (318)
T ss_pred             HHHHHHHHHHhCcccchHHHHHHHHHHHh-------------------HHHHHHHHHHHHHHHHhCccchhHHHHHHHHH
Confidence            44444445555666666666666665554                   35678888889999999999999888887454


Q ss_pred             HHhcCCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 029199           95 YQSKQDLP-KAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAV  147 (197)
Q Consensus        95 ~~~~g~~~-~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al  147 (197)
                      -. .|+.. .-++..+.++..|.+|--+|...-+++...+. ++.-+.+....|
T Consensus       123 e~-l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~-~~~EL~y~~~Ll  174 (318)
T KOG0530|consen  123 EL-LGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKD-YEDELAYADELL  174 (318)
T ss_pred             HH-hcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhh-HHHHHHHHHHHH
Confidence            44 78777 77888888888888888888888777766663 555444443333

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=95.97  E-value=0.092  Score=46.91  Aligned_cols=99  Identities=21%  Similarity=0.133  Sum_probs=76.0

Q ss_pred             CCCHHHHHHHHHHHHH-------hCCCCHHHHHHHHHHHHHh---cC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 029199           63 GGDSQGVEEYYKKMVE-------ENPGNPLFLSNYAQFLYQS---KQ-DLPKAEEYYSRAILADPGDGEILSQYAKLVWE  131 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~-------~~P~~~~~~~~la~~l~~~---~g-~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~  131 (197)
                      ..|.+.|+.+|+.+..       ..  ++.+.+.+|.++...   .. +...|..+|.++-.+.  ++.+.+.+|.++..
T Consensus       262 ~~d~e~a~~~l~~aa~~~~~~a~~~--~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~  337 (552)
T KOG1550|consen  262 TQDLESAIEYLKLAAESFKKAATKG--LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYET  337 (552)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHhhc--CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHc
Confidence            4789999999999877       33  556778889776651   11 6788999999998765  56777888888766


Q ss_pred             Hc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 029199          132 LH--NDQDRAATYYERAVHASPEDSHVHASYAGFLWET  167 (197)
Q Consensus       132 ~~--~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  167 (197)
                      -.  +|+.+|.++|..|...  .+..+.++++.|+..-
T Consensus       338 g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G  373 (552)
T KOG1550|consen  338 GTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELG  373 (552)
T ss_pred             CCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhC
Confidence            33  4678999999998764  5788999999998764

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=95.93  E-value=0.025  Score=31.37  Aligned_cols=28  Identities=21%  Similarity=0.139  Sum_probs=14.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 029199           86 FLSNYAQFLYQSKQDLPKAEEYYSRAILA  114 (197)
Q Consensus        86 ~~~~la~~l~~~~g~~~~A~~~~~~al~l  114 (197)
                      ++.++|.++.. .|++++|+.++++++.+
T Consensus         4 ~~~~la~~~~~-~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    4 ALNNLANAYRA-QGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHH-CT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHh-hhhcchhhHHHHHHHHH
Confidence            44555544444 56666666666555543

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=95.93  E-value=0.043  Score=48.42  Aligned_cols=115  Identities=15%  Similarity=-0.030  Sum_probs=90.6

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHH--HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 029199           64 GDSQGVEEYYKKMVEENPGNPLFLSNY--AQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAAT  141 (197)
Q Consensus        64 g~~~~A~~~~~~al~~~P~~~~~~~~l--a~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~  141 (197)
                      |...-++..+..-+.++|+++..+...  . ++....+....+.-..+.++..+|.+..+..+++..+...+..+.-+..
T Consensus        45 ~~~~~~~~a~~~~~~~~~~~~~llla~~ls-i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~  123 (620)
T COG3914          45 GLQALAIYALLLGIAINDVNPELLLAAFLS-ILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALAD  123 (620)
T ss_pred             CchhHHHHHHHccCccCCCCHHHHHHHHHH-hhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHH
Confidence            444457777777788999999985543  5 5555578888999999999999999999999999988887876666667


Q ss_pred             HHHHHHHhCCCCHHHHHHH------HHHHHHcCCccccccCCCc
Q 029199          142 YYERAVHASPEDSHVHASY------AGFLWETEEDNDECDAPSE  179 (197)
Q Consensus       142 ~~~~al~~~p~~~~~~~~l------a~~~~~~g~~~ea~~~~~~  179 (197)
                      ..+.+....|+|..+...+      +..+..+|+..++.....+
T Consensus       124 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~  167 (620)
T COG3914         124 ISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALER  167 (620)
T ss_pred             HHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            7777999999999988777      7777777877776544444

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=95.87  E-value=0.095  Score=42.23  Aligned_cols=73  Identities=16%  Similarity=0.075  Sum_probs=61.5

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 029199           89 NYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGF  163 (197)
Q Consensus        89 ~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  163 (197)
                      ++=..+.. .++++.|..+.++.+.++|.+|.-+...|.+|.+++. +.-|++-++..++..|+++.+-.-...+
T Consensus       186 ~lk~~~~~-e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c-~~vAl~dl~~~~~~~P~~~~a~~ir~~l  258 (269)
T COG2912         186 NLKAALLR-ELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGC-YHVALEDLSYFVEHCPDDPIAEMIRAQL  258 (269)
T ss_pred             HHHHHHHH-hhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCC-chhhHHHHHHHHHhCCCchHHHHHHHHH
Confidence            34334454 7899999999999999999999999999999999995 7899999999999999998875544443

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=95.82  E-value=0.31  Score=39.47  Aligned_cols=111  Identities=14%  Similarity=0.127  Sum_probs=79.3

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHc-----C
Q 029199           64 GDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQS---KQDLPKAEEYYSRAILADPGD-GEILSQYAKLVWELH-----N  134 (197)
Q Consensus        64 g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~---~g~~~~A~~~~~~al~l~P~~-~~~~~~lg~~l~~~~-----~  134 (197)
                      .+..+|+..|+.  ..+..++.+.++||.++..-   ..+..+|..+|++|.+..... ..+.+++|.++.. +     -
T Consensus        91 ~~~~~A~~~~~~--~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~-g~~~~~~  167 (292)
T COG0790          91 RDKTKAADWYRC--AAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLS-GLQALAV  167 (292)
T ss_pred             ccHHHHHHHHHH--HhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHc-Chhhhcc
Confidence            568889999994  45566888888899555541   128899999999998875443 3458888877666 3     1


Q ss_pred             C--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-C---CccccccCCCc
Q 029199          135 D--QDRAATYYERAVHASPEDSHVHASYAGFLWET-E---EDNDECDAPSE  179 (197)
Q Consensus       135 ~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g---~~~ea~~~~~~  179 (197)
                      .  ..+|..+|.++-...  ++.+.+++|.+|..- |   +..+|...|..
T Consensus       168 ~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~  216 (292)
T COG0790         168 AYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKK  216 (292)
T ss_pred             cHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHH
Confidence            2  337999999987766  788999999888764 2   44555555555

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=95.78  E-value=0.3  Score=43.96  Aligned_cols=114  Identities=19%  Similarity=0.227  Sum_probs=66.7

Q ss_pred             CCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-------------------H
Q 029199           63 GGDSQGVEEYYKKMVEENPGN----PLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGD-------------------G  119 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~P~~----~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~-------------------~  119 (197)
                      .|+.+.|...|+++++.+-..    ..+|.+.|..=.. ..+++.|+.+.++|.. -|.+                   .
T Consensus       400 ~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElr-h~~~~~Al~lm~~A~~-vP~~~~~~~yd~~~pvQ~rlhrSl  477 (835)
T KOG2047|consen  400 NGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELR-HENFEAALKLMRRATH-VPTNPELEYYDNSEPVQARLHRSL  477 (835)
T ss_pred             cCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHh-hhhHHHHHHHHHhhhc-CCCchhhhhhcCCCcHHHHHHHhH
Confidence            467777777777776655322    4566666644343 5666666666666653 2333                   2


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCc
Q 029199          120 EILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSE  179 (197)
Q Consensus       120 ~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~  179 (197)
                      -+|..++...-..|- ++.....|++.+.+.=-.|.+..|+|.++.+..-++++-+.|++
T Consensus       478 kiWs~y~DleEs~gt-festk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YEr  536 (835)
T KOG2047|consen  478 KIWSMYADLEESLGT-FESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYER  536 (835)
T ss_pred             HHHHHHHHHHHHhcc-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHc
Confidence            344455555555553 56666666666666655566666666666666666666555554

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=95.68  E-value=0.056  Score=47.02  Aligned_cols=79  Identities=10%  Similarity=-0.082  Sum_probs=66.7

Q ss_pred             CCCCCCCcccCCCCCHHHHHHHHHHHHH---------h---------CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 029199           51 GGGGSGFYPAGSGGDSQGVEEYYKKMVE---------E---------NPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAI  112 (197)
Q Consensus        51 ~~~~~~~~~~~~~g~~~~A~~~~~~al~---------~---------~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al  112 (197)
                      +.|.+.|......|.|..+..+|.+|++         +         ....-++++|.|..+.- .|+.-.|.+||.+++
T Consensus       284 if~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh-~grPl~AfqCf~~av  362 (696)
T KOG2471|consen  284 IFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLH-SGRPLLAFQCFQKAV  362 (696)
T ss_pred             eeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHh-cCCcHHHHHHHHHHH
Confidence            3567778888889999999999999996         1         12346789999955555 999999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHH
Q 029199          113 LADPGDGEILSQYAKLVW  130 (197)
Q Consensus       113 ~l~P~~~~~~~~lg~~l~  130 (197)
                      .....||-.|..++.+..
T Consensus       363 ~vfh~nPrlWLRlAEcCi  380 (696)
T KOG2471|consen  363 HVFHRNPRLWLRLAECCI  380 (696)
T ss_pred             HHHhcCcHHHHHHHHHHH
Confidence            999999999999998765

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=95.65  E-value=0.62  Score=36.45  Aligned_cols=104  Identities=19%  Similarity=0.166  Sum_probs=68.4

Q ss_pred             ccCCCCCHHHHHHHHHHHHHh----CCCC---HHHHHHHHHHHHHhcCCH-------HHHHHHHHHHHHhCCC------C
Q 029199           59 PAGSGGDSQGVEEYYKKMVEE----NPGN---PLFLSNYAQFLYQSKQDL-------PKAEEYYSRAILADPG------D  118 (197)
Q Consensus        59 ~~~~~g~~~~A~~~~~~al~~----~P~~---~~~~~~la~~l~~~~g~~-------~~A~~~~~~al~l~P~------~  118 (197)
                      .+....++++|++.|.-|+-.    ..++   +..+..+| .+++..++.       .+|++.|+++++....      .
T Consensus        86 ~~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlA-WlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~  164 (214)
T PF09986_consen   86 DFSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLA-WLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDE  164 (214)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH-HHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchH
Confidence            444457889999998887642    2222   34566677 455447874       4566667777665432      3


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHH
Q 029199          119 GEILSQYAKLVWELHNDQDRAATYYERAVHASPED-SHVHASYAGFL  164 (197)
Q Consensus       119 ~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~  164 (197)
                      ..+.+.+|.+.+.+|+ +++|..+|.+++.....+ +..+.+++.=+
T Consensus       165 ~~l~YLigeL~rrlg~-~~eA~~~fs~vi~~~~~s~~~~l~~~AR~~  210 (214)
T PF09986_consen  165 ATLLYLIGELNRRLGN-YDEAKRWFSRVIGSKKASKEPKLKDMARDQ  210 (214)
T ss_pred             HHHHHHHHHHHHHhCC-HHHHHHHHHHHHcCCCCCCcHHHHHHHHHH
Confidence            5788889999999895 899999999998764222 23555555443

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=95.58  E-value=0.34  Score=37.44  Aligned_cols=79  Identities=11%  Similarity=0.106  Sum_probs=59.7

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHc
Q 029199           93 FLYQSKQDLPKAEEYYSRAILA-DPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPE----DSHVHASYAGFLWET  167 (197)
Q Consensus        93 ~l~~~~g~~~~A~~~~~~al~l-~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~  167 (197)
                      ..+. ....++|...|-++-.. .=++++..+.+|..|.  ++|.++++..|-++|++.+.    |++++..++.++.++
T Consensus       115 y~Ws-r~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~--krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~  191 (203)
T PF11207_consen  115 YHWS-RFGDQEALRRFLQLEGTPELETAELQYALATYYT--KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKL  191 (203)
T ss_pred             HHhh-ccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH--ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHh
Confidence            3444 33456677766555321 1278999999997665  44689999999999998643    699999999999999


Q ss_pred             CCccccc
Q 029199          168 EEDNDEC  174 (197)
Q Consensus       168 g~~~ea~  174 (197)
                      |++++|-
T Consensus       192 ~~~e~AY  198 (203)
T PF11207_consen  192 KNYEQAY  198 (203)
T ss_pred             cchhhhh
Confidence            9999874

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=95.58  E-value=0.059  Score=29.68  Aligned_cols=33  Identities=24%  Similarity=0.270  Sum_probs=18.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHH--HHHHHHhCCCC
Q 029199           85 LFLSNYAQFLYQSKQDLPKAEEY--YSRAILADPGD  118 (197)
Q Consensus        85 ~~~~~la~~l~~~~g~~~~A~~~--~~~al~l~P~~  118 (197)
                      +.|+.+|..++. +|++++|++.  |+-+..++|.|
T Consensus         2 e~~y~~a~~~y~-~~ky~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    2 EYLYGLAYNFYQ-KGKYDEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHTTT-
T ss_pred             cHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHhcccC
Confidence            345566655555 6666666666  44666666543

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=95.55  E-value=0.59  Score=33.90  Aligned_cols=83  Identities=14%  Similarity=0.106  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHHH--hcCCHHHHHHHHHHHHH-hCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 029199           84 PLFLSNYAQFLYQ--SKQDLPKAEEYYSRAIL-ADP-GDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHAS  159 (197)
Q Consensus        84 ~~~~~~la~~l~~--~~g~~~~A~~~~~~al~-l~P-~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  159 (197)
                      ....++++..+..  ...+..+.+.+++..++ -.| ..-+..+.++..++++++ |++++.+++..|+..|+|..+..-
T Consensus        32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlke-Y~~s~~yvd~ll~~e~~n~Qa~~L  110 (149)
T KOG3364|consen   32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKE-YSKSLRYVDALLETEPNNRQALEL  110 (149)
T ss_pred             HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhh-HHHHHHHHHHHHhhCCCcHHHHHH
Confidence            4456677755554  12366788999999997 444 344678888999999995 999999999999999999998766


Q ss_pred             HHHHHHHc
Q 029199          160 YAGFLWET  167 (197)
Q Consensus       160 la~~~~~~  167 (197)
                      .-.+..+.
T Consensus       111 k~~ied~i  118 (149)
T KOG3364|consen  111 KETIEDKI  118 (149)
T ss_pred             HHHHHHHH
Confidence            55555443

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.55  E-value=0.19  Score=43.72  Aligned_cols=112  Identities=12%  Similarity=0.039  Sum_probs=86.9

Q ss_pred             CHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---CCCHHH----HHHHHHHHHHHcC
Q 029199           65 DSQGVEEYYKKMVEENPGN---PLFLSNYAQFLYQSKQDLPKAEEYYSRAILAD---PGDGEI----LSQYAKLVWELHN  134 (197)
Q Consensus        65 ~~~~A~~~~~~al~~~P~~---~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~---P~~~~~----~~~lg~~l~~~~~  134 (197)
                      +...+++|++..+...|.+   +..+..+|.+++....+.+.|..++++|..+-   |+..++    ...++.++.+..+
T Consensus        24 kIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~  103 (629)
T KOG2300|consen   24 KIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQ  103 (629)
T ss_pred             hHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcC
Confidence            7889999999999998876   44677889999988999999999999998774   544333    3445666777665


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHcCCccccccC
Q 029199          135 DQDRAATYYERAVHASPEDSHV----HASYAGFLWETEEDNDECDA  176 (197)
Q Consensus       135 ~~~~A~~~~~~al~~~p~~~~~----~~~la~~~~~~g~~~ea~~~  176 (197)
                      .+..+...+++++++..+.|..    .+.++.++.-..++.-|++.
T Consensus       104 s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~el  149 (629)
T KOG2300|consen  104 SFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALEL  149 (629)
T ss_pred             CCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHH
Confidence            5788999999999998777743    45677777777777766544

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=95.50  E-value=0.036  Score=30.72  Aligned_cols=31  Identities=16%  Similarity=0.133  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 029199          119 GEILSQYAKLVWELHNDQDRAATYYERAVHAS  150 (197)
Q Consensus       119 ~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~  150 (197)
                      ..++.++|.+|...|+ +++|+.++++++.+.
T Consensus         2 a~~~~~la~~~~~~g~-~~~A~~~~~~al~~~   32 (42)
T PF13374_consen    2 ASALNNLANAYRAQGR-YEEALELLEEALEIR   32 (42)
T ss_dssp             HHHHHHHHHHHHHCT--HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhh-cchhhHHHHHHHHHH
Confidence            3578899999999875 999999999999864

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=95.49  E-value=0.084  Score=36.79  Aligned_cols=82  Identities=18%  Similarity=0.151  Sum_probs=63.6

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcC----------CHHHHHHHHHHHHHhCCCCHHHH
Q 029199           91 AQFLYQSKQDLPKAEEYYSRAILADPGDG---EILSQYAKLVWELHN----------DQDRAATYYERAVHASPEDSHVH  157 (197)
Q Consensus        91 a~~l~~~~g~~~~A~~~~~~al~l~P~~~---~~~~~lg~~l~~~~~----------~~~~A~~~~~~al~~~p~~~~~~  157 (197)
                      +.-++. .|++-+|++..+..+..++++.   ..+..-|.+++.+..          .+--++++|.++..+.|..+..+
T Consensus         3 A~~~~~-rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L   81 (111)
T PF04781_consen    3 AKDYFA-RGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL   81 (111)
T ss_pred             HHHHHH-ccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence            334566 8999999999999999998877   556666777765544          24468999999999999998888


Q ss_pred             HHHHHHHHHcCCcccc
Q 029199          158 ASYAGFLWETEEDNDE  173 (197)
Q Consensus       158 ~~la~~~~~~g~~~ea  173 (197)
                      +.+|.-+...--|+++
T Consensus        82 ~~la~~l~s~~~Ykk~   97 (111)
T PF04781_consen   82 FELASQLGSVKYYKKA   97 (111)
T ss_pred             HHHHHHhhhHHHHHHH
Confidence            9888876555555554

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=95.47  E-value=0.4  Score=42.57  Aligned_cols=110  Identities=16%  Similarity=0.066  Sum_probs=97.9

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Q 029199           63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILAD-PGDGEILSQYAKLVWELHNDQDRAAT  141 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~l~~~~~~~~~A~~  141 (197)
                      .|+++...-.|++++---.....+|.+++..+.. .|+.+-|...+.++.++. |+.|.++...+.+--..| +++.|..
T Consensus       310 ~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~-~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~-n~~~A~~  387 (577)
T KOG1258|consen  310 LGDFSRVFILFERCLIPCALYDEFWIKYARWMES-SGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNG-NFDDAKV  387 (577)
T ss_pred             cccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHH-cCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhc-cHHHHHH
Confidence            4999999999999999999999999999988777 899999999999888774 888889888887766655 6999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCccccc
Q 029199          142 YYERAVHASPEDSHVHASYAGFLWETEEDNDEC  174 (197)
Q Consensus       142 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~  174 (197)
                      .|++...-.|+...+-.....+..+.|..+.+.
T Consensus       388 ~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~  420 (577)
T KOG1258|consen  388 ILQRIESEYPGLVEVVLRKINWERRKGNLEDAN  420 (577)
T ss_pred             HHHHHHhhCCchhhhHHHHHhHHHHhcchhhhh
Confidence            999999888999999999999999999888865

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=95.38  E-value=0.4  Score=35.30  Aligned_cols=86  Identities=7%  Similarity=-0.053  Sum_probs=61.1

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 029199           63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATY  142 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~  142 (197)
                      .++++++...+...--+.|+.+.+..--|.++.. .|++.+|+..++....-.|..|...-.++.|++.++ |. .=..+
T Consensus        23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~-rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~-Dp-~Wr~~   99 (153)
T TIGR02561        23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIA-RGNYDEAARILRELLSSAGAPPYGKALLALCLNAKG-DA-EWHVH   99 (153)
T ss_pred             cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHH-cCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcC-Ch-HHHHH
Confidence            4677777777777777888888877777755554 788888888888888777777877777888877766 43 44444


Q ss_pred             HHHHHHhCC
Q 029199          143 YERAVHASP  151 (197)
Q Consensus       143 ~~~al~~~p  151 (197)
                      -..++..++
T Consensus       100 A~~~le~~~  108 (153)
T TIGR02561       100 ADEVLARDA  108 (153)
T ss_pred             HHHHHHhCC
Confidence            555555544

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=95.29  E-value=0.24  Score=42.09  Aligned_cols=116  Identities=16%  Similarity=0.060  Sum_probs=72.5

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCCCHH---HHHHHHHHHHHHcCCH
Q 029199           63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILA---DPGDGE---ILSQYAKLVWELHNDQ  136 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l---~P~~~~---~~~~lg~~l~~~~~~~  136 (197)
                      .|+.+.|.++-+.+..+.|.-+.++...-..... .|+++.|+++.+...+.   .|+-.+   +-..-+..-..+.-|.
T Consensus       167 ~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~-~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp  245 (531)
T COG3898         167 LGAREAARHYAERAAEKAPQLPWAARATLEARCA-AGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADP  245 (531)
T ss_pred             cccHHHHHHHHHHHHhhccCCchHHHHHHHHHHh-cCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCCh
Confidence            3888888888888888888888877655435555 78888888777654433   222211   1111111222223345


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCc
Q 029199          137 DRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSE  179 (197)
Q Consensus       137 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~  179 (197)
                      ..|.+.-..++++.|+-..+-.--+..+++.|+..++-..+++
T Consensus       246 ~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~  288 (531)
T COG3898         246 ASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILET  288 (531)
T ss_pred             HHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHH
Confidence            6677777777777777777777777777777777776555554

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=95.26  E-value=0.0082  Score=49.25  Aligned_cols=64  Identities=8%  Similarity=0.144  Sum_probs=54.1

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 029199           64 GDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAK  127 (197)
Q Consensus        64 g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~  127 (197)
                      |-+.+--..|.++++.+|.+.+.|......=+...++++.++..|.++|+.+|++|-+|..+-.
T Consensus       121 k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyfr  184 (435)
T COG5191         121 KMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYFR  184 (435)
T ss_pred             HHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHHH
Confidence            6677778889999999999999998744344444899999999999999999999999977643

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=95.24  E-value=0.32  Score=43.75  Aligned_cols=117  Identities=19%  Similarity=0.258  Sum_probs=87.5

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH-H-HcCCHHH
Q 029199           63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILAD--PGDGEILSQYAKLVW-E-LHNDQDR  138 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~--P~~~~~~~~lg~~l~-~-~~~~~~~  138 (197)
                      .|-++.....|++.+.+.--.|.+..|+|.++-. ..-++++.+.|++-+.+.  |.-.++|..+-.... + .|...+.
T Consensus       490 ~gtfestk~vYdriidLriaTPqii~NyAmfLEe-h~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEr  568 (835)
T KOG2047|consen  490 LGTFESTKAVYDRIIDLRIATPQIIINYAMFLEE-HKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLER  568 (835)
T ss_pred             hccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-hHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHH
Confidence            3888999999999999999999999999977766 788999999999999986  566677776643221 2 2445899


Q ss_pred             HHHHHHHHHHhCCC-CH-HHHHHHHHHHHHcCCccccccCCCcc
Q 029199          139 AATYYERAVHASPE-DS-HVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       139 A~~~~~~al~~~p~-~~-~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      |.++|++||+..|. +. .++..++.+-.+-|-...|...+++.
T Consensus       569 aRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyera  612 (835)
T KOG2047|consen  569 ARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERA  612 (835)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            99999999998873 22 23455555555556655566665553

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=95.24  E-value=0.088  Score=44.29  Aligned_cols=113  Identities=13%  Similarity=0.053  Sum_probs=75.1

Q ss_pred             CHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC--H----HHHHHHHHHHHHHc
Q 029199           65 DSQGVEEYYKKMVEENPGNP-----LFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGD--G----EILSQYAKLVWELH  133 (197)
Q Consensus        65 ~~~~A~~~~~~al~~~P~~~-----~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~--~----~~~~~lg~~l~~~~  133 (197)
                      ++.+++.+-.-.+.+-...+     .++..++..... ++.++++++.|++|++.-.++  +    .+...+|.++-+++
T Consensus        98 ~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlg-ls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~  176 (518)
T KOG1941|consen   98 EFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLG-LSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLK  176 (518)
T ss_pred             HhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhh-HHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHH
Confidence            44455555544444432222     345556666666 788999999999998874433  3    45677888877777


Q ss_pred             CCHHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHcCCccccccCCCc
Q 029199          134 NDQDRAATYYERAVHASPE----------DSHVHASYAGFLWETEEDNDECDAPSE  179 (197)
Q Consensus       134 ~~~~~A~~~~~~al~~~p~----------~~~~~~~la~~~~~~g~~~ea~~~~~~  179 (197)
                       |+++|+.+..+|.++--+          ...+++.++..+..+|+.-+|.+.-++
T Consensus       177 -D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~E  231 (518)
T KOG1941|consen  177 -DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEE  231 (518)
T ss_pred             -hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence             689999999998887422          224567888888888888776544443

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=95.18  E-value=0.047  Score=47.89  Aligned_cols=81  Identities=21%  Similarity=0.086  Sum_probs=69.5

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccC
Q 029199           99 QDLPKAEEYYSRAILADPGDGEILSQYAKLVWELH--NDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDA  176 (197)
Q Consensus        99 g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~  176 (197)
                      +....|+..|.++++..|.....+.|++.++.+-+  ++.-.|+.-...|++++|....+|+.++.++.+++++.+|...
T Consensus       388 ~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~  467 (758)
T KOG1310|consen  388 SIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSC  467 (758)
T ss_pred             HHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhh
Confidence            56788999999999999999999999998776532  1344788888999999999999999999999999999999765


Q ss_pred             CCc
Q 029199          177 PSE  179 (197)
Q Consensus       177 ~~~  179 (197)
                      ...
T Consensus       468 ~~a  470 (758)
T KOG1310|consen  468 HWA  470 (758)
T ss_pred             HHH
Confidence            554

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=95.11  E-value=0.12  Score=41.44  Aligned_cols=62  Identities=23%  Similarity=0.194  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 029199           69 VEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWE  131 (197)
Q Consensus        69 A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~  131 (197)
                      |+.+|.+|+.+.|++...|+.+|.+... .|+.=.|+-+|-|++....-.+.+..|+..++.+
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~-~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASY-QGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHH-TT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhcc-ccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            6789999999999999999999955555 8899999999988887665568888998877666

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=95.04  E-value=0.11  Score=41.62  Aligned_cols=62  Identities=26%  Similarity=0.288  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 029199          104 AEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWE  166 (197)
Q Consensus       104 A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  166 (197)
                      |+.+|.+|+.+.|++...++.+|.+....+ +.=.|+-+|-|++...-..+.+..|+..++.+
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~-~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQG-DDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT--HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhcccc-chHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            689999999999999999999999888866 46799999999998775569999999999999

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.91  E-value=0.34  Score=37.29  Aligned_cols=87  Identities=15%  Similarity=0.126  Sum_probs=67.0

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Q 029199           89 NYAQFLYQSKQDLPKAEEYYSRAILADPGDG----EILSQYAKLVWELHNDQDRAATYYERAVHASPE-DSHVHASYAGF  163 (197)
Q Consensus        89 ~la~~l~~~~g~~~~A~~~~~~al~l~P~~~----~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~  163 (197)
                      .++..... .+++++|+..++.++. .|.|.    -+..+++.++.+++. +++|+..++....  ++ .+..-...|.+
T Consensus        94 ~lAk~~ve-~~~~d~A~aqL~~~l~-~t~De~lk~l~~lRLArvq~q~~k-~D~AL~~L~t~~~--~~w~~~~~elrGDi  168 (207)
T COG2976          94 ELAKAEVE-ANNLDKAEAQLKQALA-QTKDENLKALAALRLARVQLQQKK-ADAALKTLDTIKE--ESWAAIVAELRGDI  168 (207)
T ss_pred             HHHHHHHh-hccHHHHHHHHHHHHc-cchhHHHHHHHHHHHHHHHHHhhh-HHHHHHHHhcccc--ccHHHHHHHHhhhH
Confidence            45556666 7899999999999986 34443    456778999999885 9999998877532  22 23456788999


Q ss_pred             HHHcCCccccccCCCcc
Q 029199          164 LWETEEDNDECDAPSEL  180 (197)
Q Consensus       164 ~~~~g~~~ea~~~~~~~  180 (197)
                      +...|+-++|...|...
T Consensus       169 ll~kg~k~~Ar~ay~kA  185 (207)
T COG2976         169 LLAKGDKQEARAAYEKA  185 (207)
T ss_pred             HHHcCchHHHHHHHHHH
Confidence            99999999998888774

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.82  E-value=0.33  Score=38.81  Aligned_cols=115  Identities=14%  Similarity=0.107  Sum_probs=72.5

Q ss_pred             CCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHH
Q 029199           64 GDSQGVEEYYKKMVEEN-----PGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGD------GEILSQYAKLVWEL  132 (197)
Q Consensus        64 g~~~~A~~~~~~al~~~-----P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~------~~~~~~lg~~l~~~  132 (197)
                      ..+.++..+|+++..+.     |+-+..-...+.-... .-++++|++.|++++.+--.+      .+.+...+.+|..+
T Consensus        85 ~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~le-nv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl  163 (308)
T KOG1585|consen   85 SKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALE-NVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRL  163 (308)
T ss_pred             HHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh-cCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhh
Confidence            56677777788777653     4444444444434444 678999999999988764322      23444556778887


Q ss_pred             cCCHHHHHHHHHHHH----HhC--CCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          133 HNDQDRAATYYERAV----HAS--PEDSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       133 ~~~~~~A~~~~~~al----~~~--p~~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      .+ +++|...+.+-.    ..+  |+....+.....++....++..|.+.++..
T Consensus       164 ~k-f~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~  216 (308)
T KOG1585|consen  164 EK-FTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDC  216 (308)
T ss_pred             HH-hhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcch
Confidence            76 778777665543    333  333334444445555556999998888884

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=94.74  E-value=0.12  Score=26.76  Aligned_cols=24  Identities=29%  Similarity=0.450  Sum_probs=9.9

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHH
Q 029199          102 PKAEEYYSRAILADPGDGEILSQY  125 (197)
Q Consensus       102 ~~A~~~~~~al~l~P~~~~~~~~l  125 (197)
                      +.+...|++++...|.++.+|..+
T Consensus         4 ~~~r~i~e~~l~~~~~~~~~W~~y   27 (33)
T smart00386        4 ERARKIYERALEKFPKSVELWLKY   27 (33)
T ss_pred             HHHHHHHHHHHHHCCCChHHHHHH
Confidence            334444444444444444444333

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=94.72  E-value=0.083  Score=42.57  Aligned_cols=69  Identities=16%  Similarity=0.002  Sum_probs=60.6

Q ss_pred             ccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 029199           59 PAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKL  128 (197)
Q Consensus        59 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~  128 (197)
                      .++..++++.|..+.++.+.++|+++.-+.-.|.+|.. +|-+.-|++.++..++.-|+++.+-.-....
T Consensus       190 ~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~q-l~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l  258 (269)
T COG2912         190 ALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQ-LGCYHVALEDLSYFVEHCPDDPIAEMIRAQL  258 (269)
T ss_pred             HHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHh-cCCchhhHHHHHHHHHhCCCchHHHHHHHHH
Confidence            44556999999999999999999999999999966665 9999999999999999999999887666543

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=94.64  E-value=0.89  Score=40.70  Aligned_cols=102  Identities=21%  Similarity=0.165  Sum_probs=76.6

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc----CCHHH
Q 029199           65 DSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSK--QDLPKAEEYYSRAILADPGDGEILSQYAKLVWELH----NDQDR  138 (197)
Q Consensus        65 ~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~--g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~----~~~~~  138 (197)
                      +...|+.+|.++....  ++.+.+.+|.++....  .+..+|.++|..|.+.  .++.+.++++.++.. |    ++.++
T Consensus       308 d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~-G~gv~r~~~~  382 (552)
T KOG1550|consen  308 DYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYEL-GLGVERNLEL  382 (552)
T ss_pred             cHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHh-CCCcCCCHHH
Confidence            8899999999998886  4555667785555422  2467999999999764  578899999988665 5    46889


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCcccc
Q 029199          139 AATYYERAVHASPEDSHVHASYAGFLWET-EEDNDE  173 (197)
Q Consensus       139 A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~ea  173 (197)
                      |..++.++.+..  ++.+.+.++.++... ++.+.+
T Consensus       383 A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~  416 (552)
T KOG1550|consen  383 AFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTA  416 (552)
T ss_pred             HHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHH
Confidence            999999999987  567777777666554 555543

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=94.58  E-value=0.25  Score=38.20  Aligned_cols=71  Identities=21%  Similarity=0.196  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHcCCHHHHH
Q 029199           67 QGVEEYYKKMVE-ENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPG----DGEILSQYAKLVWELHNDQDRAA  140 (197)
Q Consensus        67 ~~A~~~~~~al~-~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~----~~~~~~~lg~~l~~~~~~~~~A~  140 (197)
                      +.|.+.|-++-. -.=++++..+.|| .+|. ..+.++++..+-++|++.+.    ||++...++.++++.++ +++|-
T Consensus       123 ~~A~~~fL~~E~~~~l~t~elq~aLA-tyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~-~e~AY  198 (203)
T PF11207_consen  123 QEALRRFLQLEGTPELETAELQYALA-TYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN-YEQAY  198 (203)
T ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHHH-HHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc-hhhhh
Confidence            456666655422 1235688899999 5565 68999999999999999644    59999999999999885 87764

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=94.57  E-value=0.58  Score=40.53  Aligned_cols=114  Identities=13%  Similarity=0.105  Sum_probs=82.5

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHH--HHHHHHh------------CCCCHHHHHHHHH--
Q 029199           64 GDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEY--YSRAILA------------DPGDGEILSQYAK--  127 (197)
Q Consensus        64 g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~--~~~al~l------------~P~~~~~~~~lg~--  127 (197)
                      +.-++|+..++.+++..|.|...-+..  +.+. ...|.+|+..  +-+.+.+            .-.+.+..+-++.  
T Consensus       394 ~~dekalnLLk~il~ft~yD~ec~n~v--~~fv-Kq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAE  470 (549)
T PF07079_consen  394 QCDEKALNLLKLILQFTNYDIECENIV--FLFV-KQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAE  470 (549)
T ss_pred             CccHHHHHHHHHHHHhccccHHHHHHH--HHHH-HHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHH
Confidence            557899999999999999887654422  2222 3445555332  3333333            1245555555554  


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcccc
Q 029199          128 LVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSELDS  182 (197)
Q Consensus       128 ~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~~~  182 (197)
                      .++..| ++.++.-+-....++.| .+.++.-+|.|+....+|+||-..+..+|.
T Consensus       471 yLysqg-ey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~  523 (549)
T PF07079_consen  471 YLYSQG-EYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLPP  523 (549)
T ss_pred             HHHhcc-cHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence            356656 69999999999999999 799999999999999999999999998874

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=94.46  E-value=0.93  Score=38.69  Aligned_cols=104  Identities=17%  Similarity=0.131  Sum_probs=66.0

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 029199           64 GDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYY  143 (197)
Q Consensus        64 g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~  143 (197)
                      -+...|...-.+++++.|+...+-..-+..++. .|+..++-..++.+-+.+| +|+++..|  +....|   +.+++-+
T Consensus       243 adp~~Ar~~A~~a~KL~pdlvPaav~AAralf~-d~~~rKg~~ilE~aWK~eP-HP~ia~lY--~~ar~g---dta~dRl  315 (531)
T COG3898         243 ADPASARDDALEANKLAPDLVPAAVVAARALFR-DGNLRKGSKILETAWKAEP-HPDIALLY--VRARSG---DTALDRL  315 (531)
T ss_pred             CChHHHHHHHHHHhhcCCccchHHHHHHHHHHh-ccchhhhhhHHHHHHhcCC-ChHHHHHH--HHhcCC---CcHHHHH
Confidence            456677777778888888887777666667776 7888888888888877777 34444333  222322   2344444


Q ss_pred             HHH---HHhCCCCHHHHHHHHHHHHHcCCccccc
Q 029199          144 ERA---VHASPEDSHVHASYAGFLWETEEDNDEC  174 (197)
Q Consensus       144 ~~a---l~~~p~~~~~~~~la~~~~~~g~~~ea~  174 (197)
                      +++   -.+.|+|.+..+..+..-..-|++..|.
T Consensus       316 kRa~~L~slk~nnaes~~~va~aAlda~e~~~AR  349 (531)
T COG3898         316 KRAKKLESLKPNNAESSLAVAEAALDAGEFSAAR  349 (531)
T ss_pred             HHHHHHHhcCccchHHHHHHHHHHHhccchHHHH
Confidence            443   3345777777777766666666665543

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=94.31  E-value=0.83  Score=37.05  Aligned_cols=117  Identities=16%  Similarity=0.116  Sum_probs=81.5

Q ss_pred             CCCHHHHHHHHHHHHHhC----CCC----HHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHh----C---CCCH-------
Q 029199           63 GGDSQGVEEYYKKMVEEN----PGN----PLFLSNYAQFLYQSKQ-DLPKAEEYYSRAILA----D---PGDG-------  119 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~----P~~----~~~~~~la~~l~~~~g-~~~~A~~~~~~al~l----~---P~~~-------  119 (197)
                      .|+++.|..+|.++-...    |+.    ....++.|..++. .+ +++.|..++++++++    .   ...+       
T Consensus         6 ~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~-~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~   84 (278)
T PF08631_consen    6 QGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLS-KKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRL   84 (278)
T ss_pred             hCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHH-cCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHH
Confidence            599999999999986654    443    4467778877777 77 999999999999988    2   2222       


Q ss_pred             HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          120 EILSQYAKLVWELHN--DQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       120 ~~~~~lg~~l~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      .++..++.++.+.+.  ..++|...++.+-.-.|+.+.++.-.-.++.+.++.++..+.+.++
T Consensus        85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~m  147 (278)
T PF08631_consen   85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRM  147 (278)
T ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHH
Confidence            345556667766553  1345566666665566888888855556666677777777777665

It is also involved in sporulation [].

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=94.17  E-value=0.097  Score=46.56  Aligned_cols=108  Identities=14%  Similarity=0.045  Sum_probs=83.8

Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 029199           70 EEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDG--EILSQYAKLVWELHNDQDRAATYYERAV  147 (197)
Q Consensus        70 ~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~--~~~~~lg~~l~~~~~~~~~A~~~~~~al  147 (197)
                      -..+..+++.+|.+...+. ++.+|++..|+..+|..|+..++-+-|+..  .++..+|.++...|. ..+|--.+..|+
T Consensus       199 ~~~~~~glq~~~~sw~lH~-~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~-sadA~iILhAA~  276 (886)
T KOG4507|consen  199 GHLIHEGLQKNTSSWVLHN-MASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGF-SADAAVILHAAL  276 (886)
T ss_pred             HHHHHHhhhcCchhHHHHH-HHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHccc-ccchhheeehhc
Confidence            3445677888887777665 566888889999999999999998877644  578889999999886 677877788887


Q ss_pred             HhCCCCHHHHHHHHHHHHHcCCccccccCCCc
Q 029199          148 HASPEDSHVHASYAGFLWETEEDNDECDAPSE  179 (197)
Q Consensus       148 ~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~  179 (197)
                      .-.|.-..-++.++.++..+|.+....-.|..
T Consensus       277 ~dA~~~t~n~y~l~~i~aml~~~N~S~~~ydh  308 (886)
T KOG4507|consen  277 DDADFFTSNYYTLGNIYAMLGEYNHSVLCYDH  308 (886)
T ss_pred             cCCccccccceeHHHHHHHHhhhhhhhhhhhh
Confidence            77676666688999999998887765544443

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=94.15  E-value=0.18  Score=26.01  Aligned_cols=30  Identities=27%  Similarity=0.527  Sum_probs=26.7

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 029199           64 GDSQGVEEYYKKMVEENPGNPLFLSNYAQF   93 (197)
Q Consensus        64 g~~~~A~~~~~~al~~~P~~~~~~~~la~~   93 (197)
                      |+.+.+...|++++...|.++.+|..+..+
T Consensus         1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~   30 (33)
T smart00386        1 GDIERARKIYERALEKFPKSVELWLKYAEF   30 (33)
T ss_pred             CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence            567899999999999999999999988744

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=94.12  E-value=1.7  Score=32.04  Aligned_cols=74  Identities=16%  Similarity=-0.001  Sum_probs=65.3

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccc
Q 029199           98 KQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDND  172 (197)
Q Consensus        98 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~e  172 (197)
                      ..+.+++...+...=-+.|+.+++..--|+++...|+ +++|+..|+...+-.+..|...--++.|+.-+|+.+-
T Consensus        23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~-w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~W   96 (153)
T TIGR02561        23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGN-YDEAARILRELLSSAGAPPYGKALLALCLNAKGDAEW   96 (153)
T ss_pred             cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCC-HHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChHH
Confidence            7899999999999889999999999999999999775 9999999999988888878888888888888887654

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=94.11  E-value=0.22  Score=27.40  Aligned_cols=34  Identities=18%  Similarity=0.134  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHH--HHHHHHhCCCC
Q 029199          119 GEILSQYAKLVWELHNDQDRAATY--YERAVHASPED  153 (197)
Q Consensus       119 ~~~~~~lg~~l~~~~~~~~~A~~~--~~~al~~~p~~  153 (197)
                      ++.++.+|..++..|+ +++|++.  |+-+..++|.|
T Consensus         1 ~e~~y~~a~~~y~~~k-y~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    1 PEYLYGLAYNFYQKGK-YDEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHTTT-
T ss_pred             CcHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHhcccC
Confidence            3567888988888775 9999999  55888888765

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=94.06  E-value=0.47  Score=41.93  Aligned_cols=74  Identities=18%  Similarity=0.192  Sum_probs=50.2

Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 029199           74 KKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHAS  150 (197)
Q Consensus        74 ~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~  150 (197)
                      ++-++.+|.|...|+.|-.-+.  ..-+++.+..|++.+...|..+.+|-.+.......+ +|+.-...|.++|..-
T Consensus        10 ~~rie~nP~di~sw~~lire~q--t~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~sk-dfe~VEkLF~RCLvkv   83 (656)
T KOG1914|consen   10 RERIEENPYDIDSWSQLIREAQ--TQPIDKVRETYEQLVNVFPSSPRAWKLYIERELASK-DFESVEKLFSRCLVKV   83 (656)
T ss_pred             HHHHhcCCccHHHHHHHHHHHc--cCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHH
Confidence            5567777777777776663333  347777777777777777777777777776666655 4777777777776543

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=93.64  E-value=1.8  Score=30.79  Aligned_cols=83  Identities=13%  Similarity=0.102  Sum_probs=58.5

Q ss_pred             CCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-------CCCCHHHH--
Q 029199           64 GDSQGVEEYYKKMVEENPG------------NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILA-------DPGDGEIL--  122 (197)
Q Consensus        64 g~~~~A~~~~~~al~~~P~------------~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l-------~P~~~~~~--  122 (197)
                      |.|++|...++++....-.            |...|..|+..+.. +|+|++++..-+++|..       +.+....|  
T Consensus        23 g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~-Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIa  101 (144)
T PF12968_consen   23 GAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAG-LGRYDECLQSADRALRYFNRRGELHQDEGKLWIA  101 (144)
T ss_dssp             T-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHhhccccccccchhHHH
Confidence            8899999999999876422            34567778877777 99999887777777653       44444433  


Q ss_pred             --HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 029199          123 --SQYAKLVWELHNDQDRAATYYERAVH  148 (197)
Q Consensus       123 --~~lg~~l~~~~~~~~~A~~~~~~al~  148 (197)
                        ++.+..+..+|+ .++|+..|+.+-+
T Consensus       102 aVfsra~Al~~~Gr-~~eA~~~fr~agE  128 (144)
T PF12968_consen  102 AVFSRAVALEGLGR-KEEALKEFRMAGE  128 (144)
T ss_dssp             HHHHHHHHHHHTT--HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCC-hHHHHHHHHHHHH
Confidence              456777888887 7888888888754

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=93.61  E-value=0.41  Score=41.45  Aligned_cols=79  Identities=16%  Similarity=0.164  Sum_probs=60.3

Q ss_pred             CHHHHHHH--HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----H
Q 029199           83 NPLFLSNY--AQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDS-----H  155 (197)
Q Consensus        83 ~~~~~~~l--a~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~-----~  155 (197)
                      +.+.-+-|  |..++. +|++.++.-+-....++.| +|.++..+|.+++..++ |++|..++...    |.|.     .
T Consensus       459 e~eian~LaDAEyLys-qgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~-Y~eA~~~l~~L----P~n~~~~dsk  531 (549)
T PF07079_consen  459 EEEIANFLADAEYLYS-QGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKR-YQEAWEYLQKL----PPNERMRDSK  531 (549)
T ss_pred             HHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhh-HHHHHHHHHhC----CCchhhHHHH
Confidence            34444444  456777 8999999999999999999 99999999999999885 99999998775    3333     4


Q ss_pred             HHHHHHHHHHHcC
Q 029199          156 VHASYAGFLWETE  168 (197)
Q Consensus       156 ~~~~la~~~~~~g  168 (197)
                      ++-.++.|+..+-
T Consensus       532 vqKAl~lCqKh~~  544 (549)
T PF07079_consen  532 VQKALALCQKHLP  544 (549)
T ss_pred             HHHHHHHHHHhhh
Confidence            4555666665543

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=93.56  E-value=0.49  Score=34.30  Aligned_cols=67  Identities=15%  Similarity=0.150  Sum_probs=51.9

Q ss_pred             CCCHHHHHHHHHHHHH-hCCCCH-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 029199           63 GGDSQGVEEYYKKMVE-ENPGNP-LFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVW  130 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~-~~P~~~-~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~  130 (197)
                      ..+..+.+.+++..++ -.|... +..+.|+.-+++ .++|++++.+.+..|+.+|+|.++.-..-.+.-
T Consensus        48 ~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yR-lkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~~ied  116 (149)
T KOG3364|consen   48 TEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYR-LKEYSKSLRYVDALLETEPNNRQALELKETIED  116 (149)
T ss_pred             hHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHH-HhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Confidence            3677889999999997 556543 345556756666 999999999999999999999998766554433

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=93.53  E-value=1.7  Score=35.74  Aligned_cols=89  Identities=15%  Similarity=0.173  Sum_probs=66.9

Q ss_pred             CCCHHHHHHHHHHHHHhCCC----------------------------------CHHHHHHHHHHHHHhc------CCHH
Q 029199           63 GGDSQGVEEYYKKMVEENPG----------------------------------NPLFLSNYAQFLYQSK------QDLP  102 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~P~----------------------------------~~~~~~~la~~l~~~~------g~~~  102 (197)
                      .|+..+|+..++..+.....                                  .+.++..+|.+... .      +..+
T Consensus       197 ~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~-~~~~~~~~~~~  275 (352)
T PF02259_consen  197 QGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDE-LYSKLSSESSD  275 (352)
T ss_pred             cCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHh-hccccccccHH
Confidence            48889999998888871110                                  13456677766665 6      8899


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC----------------CHHHHHHHHHHHHHhCCC
Q 029199          103 KAEEYYSRAILADPGDGEILSQYAKLVWELHN----------------DQDRAATYYERAVHASPE  152 (197)
Q Consensus       103 ~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~----------------~~~~A~~~~~~al~~~p~  152 (197)
                      +++..|+++++++|....+|+.+|..+...-.                ....|+.+|-+++...|.
T Consensus       276 ~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~  341 (352)
T PF02259_consen  276 EILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK  341 (352)
T ss_pred             HHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence            99999999999999999999999987654321                123588888888888877

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=93.41  E-value=0.22  Score=43.47  Aligned_cols=89  Identities=16%  Similarity=0.061  Sum_probs=46.4

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 029199           64 GDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYY  143 (197)
Q Consensus        64 g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~  143 (197)
                      |+|+.+.+.+..+-..-..-..+..-+-.-++. .+++++|...-+-.|..+-.++++..--+..-.+++ .++++..++
T Consensus       337 g~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~-l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~-~~d~~~~~w  414 (831)
T PRK15180        337 GYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHG-LARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQ-LFDKSYHYW  414 (831)
T ss_pred             hhHHHHHHHhhchhhhhcCCchHHHHHHHhhhc-hhhHHHHHHHHHHHhccccCChhheeeecccHHHHh-HHHHHHHHH
Confidence            555555555544433322222222222223444 556666666666666555555655544444444445 467777777


Q ss_pred             HHHHHhCCCCH
Q 029199          144 ERAVHASPEDS  154 (197)
Q Consensus       144 ~~al~~~p~~~  154 (197)
                      .+.+.++|...
T Consensus       415 k~~~~~~~~~~  425 (831)
T PRK15180        415 KRVLLLNPETQ  425 (831)
T ss_pred             HHHhccCChhc
Confidence            77777766533

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=93.20  E-value=3.1  Score=33.94  Aligned_cols=95  Identities=18%  Similarity=0.083  Sum_probs=71.3

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 029199           64 GDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYY  143 (197)
Q Consensus        64 g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~  143 (197)
                      .++..=+...+++++.  ....++..++..+.. .++++.++..+++.+..+|.+..+|..+-..|...|. ...|+..|
T Consensus       135 ~~f~~WV~~~R~~l~e--~~~~~l~~lae~~~~-~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~-~~~ai~~y  210 (280)
T COG3629         135 DRFDEWVLEQRRALEE--LFIKALTKLAEALIA-CGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGR-QSAAIRAY  210 (280)
T ss_pred             chHHHHHHHHHHHHHH--HHHHHHHHHHHHHHh-cccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCC-chHHHHHH
Confidence            3355545445554443  356678888877776 8999999999999999999999999999999999775 78999999


Q ss_pred             HHHHHh-------CCCCHHHHHHHHHH
Q 029199          144 ERAVHA-------SPEDSHVHASYAGF  163 (197)
Q Consensus       144 ~~al~~-------~p~~~~~~~~la~~  163 (197)
                      ++.-+.       +|. +.++..+..+
T Consensus       211 ~~l~~~~~edlgi~P~-~~~~~~y~~~  236 (280)
T COG3629         211 RQLKKTLAEELGIDPA-PELRALYEEI  236 (280)
T ss_pred             HHHHHHhhhhcCCCcc-HHHHHHHHHH
Confidence            888663       243 4555555555

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=93.04  E-value=0.52  Score=31.62  Aligned_cols=51  Identities=16%  Similarity=0.109  Sum_probs=33.7

Q ss_pred             CCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 029199           63 GGDSQGVEEYYKKMVEENPGN---------PLFLSNYAQFLYQSKQDLPKAEEYYSRAILA  114 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~P~~---------~~~~~~la~~l~~~~g~~~~A~~~~~~al~l  114 (197)
                      .|++..|++.+.+.+......         ..++.++|.+... .|++++|+..+++++++
T Consensus        11 ~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~-~G~~~~A~~~l~eAi~~   70 (94)
T PF12862_consen   11 SGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRR-FGHYEEALQALEEAIRL   70 (94)
T ss_pred             cCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHH
Confidence            478888877777766543221         3455667755555 77777777777777765

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=92.99  E-value=1.3  Score=29.65  Aligned_cols=52  Identities=17%  Similarity=0.123  Sum_probs=41.8

Q ss_pred             cCCHHHHHHHHHHHHHhCC----CC-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 029199           98 KQDLPKAEEYYSRAILADP----GD-----GEILSQYAKLVWELHNDQDRAATYYERAVHAS  150 (197)
Q Consensus        98 ~g~~~~A~~~~~~al~l~P----~~-----~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~  150 (197)
                      .+++..|++.+.+.+....    ..     ..++.++|.+....|. +++|++.++.++++-
T Consensus        11 ~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~-~~~A~~~l~eAi~~A   71 (94)
T PF12862_consen   11 SGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGH-YEEALQALEEAIRLA   71 (94)
T ss_pred             cCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHH
Confidence            6999999888777776532    22     4677889999999885 899999999999885

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.79  E-value=1.2  Score=33.87  Aligned_cols=100  Identities=9%  Similarity=0.110  Sum_probs=53.9

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHH-----HHHHHHHHHhcCCHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHHcCCH
Q 029199           63 GGDSQGVEEYYKKMVEENPGNPLFL-----SNYAQFLYQSKQDLPKAEEYYSRA-ILADPGDGEILSQYAKLVWELHNDQ  136 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~P~~~~~~-----~~la~~l~~~~g~~~~A~~~~~~a-l~l~P~~~~~~~~lg~~l~~~~~~~  136 (197)
                      .|+...|+..|.++-.-.|- |.+.     ..-+.++.. .|-|+.-....+.. -.-+|--..+.-.+|..-++.| ++
T Consensus       107 kgdta~AV~aFdeia~dt~~-P~~~rd~ARlraa~lLvD-~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kag-d~  183 (221)
T COG4649         107 KGDTAAAVAAFDEIAADTSI-PQIGRDLARLRAAYLLVD-NGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAG-DF  183 (221)
T ss_pred             cccHHHHHHHHHHHhccCCC-cchhhHHHHHHHHHHHhc-cccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhcc-ch
Confidence            47777777777775544332 2221     222323333 66666554444332 1223444456666676666656 47


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 029199          137 DRAATYYERAVHASPEDSHVHASYAGFLWE  166 (197)
Q Consensus       137 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~  166 (197)
                      .+|..+|.+... +..-|....+++.++..
T Consensus       184 a~A~~~F~qia~-Da~aprnirqRAq~mld  212 (221)
T COG4649         184 AKAKSWFVQIAN-DAQAPRNIRQRAQIMLD  212 (221)
T ss_pred             HHHHHHHHHHHc-cccCcHHHHHHHHHHHH
Confidence            777777776654 55555566666665544

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=92.76  E-value=0.17  Score=25.40  Aligned_cols=21  Identities=24%  Similarity=0.170  Sum_probs=9.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHH
Q 029199           87 LSNYAQFLYQSKQDLPKAEEYY  108 (197)
Q Consensus        87 ~~~la~~l~~~~g~~~~A~~~~  108 (197)
                      ++++|..+.. .|++++|+..+
T Consensus         4 ~~~la~~~~~-~G~~~eA~~~l   24 (26)
T PF07721_consen    4 RLALARALLA-QGDPDEAERLL   24 (26)
T ss_pred             HHHHHHHHHH-cCCHHHHHHHH
Confidence            3444444444 45555554444

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=92.61  E-value=0.26  Score=27.44  Aligned_cols=28  Identities=14%  Similarity=0.250  Sum_probs=16.4

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 029199           86 FLSNYAQFLYQSKQDLPKAEEYYSRAILA  114 (197)
Q Consensus        86 ~~~~la~~l~~~~g~~~~A~~~~~~al~l  114 (197)
                      ++..||.+-.. .++|++|+..|+++|++
T Consensus         3 v~~~Lgeisle-~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    3 VYDLLGEISLE-NENFEQAIEDYEKALEI   30 (38)
T ss_pred             HHHHHHHHHHH-hccHHHHHHHHHHHHHH
Confidence            44555655554 56666666666666654

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=92.48  E-value=0.26  Score=42.27  Aligned_cols=52  Identities=13%  Similarity=0.164  Sum_probs=36.9

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccC
Q 029199          124 QYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDA  176 (197)
Q Consensus       124 ~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~  176 (197)
                      .+..||..+++ .+-|+.+..+.+-++|.++.-|...+.|+..+.+|.||.+.
T Consensus       233 klv~CYL~~rk-pdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarS  284 (569)
T PF15015_consen  233 KLVTCYLRMRK-PDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARS  284 (569)
T ss_pred             HHHHhhhhcCC-CchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            34556666664 67777777777777777777777777777777777776543

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.43  E-value=0.68  Score=41.74  Aligned_cols=93  Identities=11%  Similarity=0.152  Sum_probs=75.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 029199           85 LFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDG------EILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHA  158 (197)
Q Consensus        85 ~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~------~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~  158 (197)
                      ..|+.-+ -.++ ..+|.-+++.|+..+..-|.|.      ....++..||..+.+ .|+|.++++.|=+.+|.++-...
T Consensus       356 iLWn~A~-~~F~-~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~Q-LD~A~E~~~EAE~~d~~~~l~q~  432 (872)
T KOG4814|consen  356 LLWNTAK-KLFK-MEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQ-LDNAVEVYQEAEEVDRQSPLCQL  432 (872)
T ss_pred             HHHHhhH-HHHH-HHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHhhccccHHHHH
Confidence            3455433 6676 7899999999999999887654      356677889999885 99999999999999999999988


Q ss_pred             HHHHHHHHcCCccccccCCCcc
Q 029199          159 SYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       159 ~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      ..-.+....|.-++|....+++
T Consensus       433 ~~~~~~~~E~~Se~AL~~~~~~  454 (872)
T KOG4814|consen  433 LMLQSFLAEDKSEEALTCLQKI  454 (872)
T ss_pred             HHHHHHHHhcchHHHHHHHHHH
Confidence            8888888888888887666554

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=92.40  E-value=0.96  Score=38.27  Aligned_cols=90  Identities=12%  Similarity=0.122  Sum_probs=69.4

Q ss_pred             CCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHHcCC-
Q 029199           63 GGDSQGVEEYYKKMVEENPG-NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADP-----GDGEILSQYAKLVWELHND-  135 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P-----~~~~~~~~lg~~l~~~~~~-  135 (197)
                      +|-+..|.+..+-.+.+||. |+-.....-..+..+.++++-=++.++.......     .-|...+..+.+++.++++ 
T Consensus       116 RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~~  195 (360)
T PF04910_consen  116 RGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLEKEE  195 (360)
T ss_pred             cCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcCcc
Confidence            69999999999999999999 8776555554555557888888888877665322     1346778888888888863 


Q ss_pred             -------------HHHHHHHHHHHHHhCCC
Q 029199          136 -------------QDRAATYYERAVHASPE  152 (197)
Q Consensus       136 -------------~~~A~~~~~~al~~~p~  152 (197)
                                   .++|.+.+.+|+...|.
T Consensus       196 ~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~  225 (360)
T PF04910_consen  196 SSQSSAQSGRSENSESADEALQKAILRFPW  225 (360)
T ss_pred             ccccccccccccchhHHHHHHHHHHHHhHH
Confidence                         17999999999998874

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=92.38  E-value=1.5  Score=33.17  Aligned_cols=95  Identities=15%  Similarity=0.044  Sum_probs=67.9

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHH--
Q 029199           84 PLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGD---GEILSQYAKLVWELHNDQDRAATYYERAVHAS--PEDSHV--  156 (197)
Q Consensus        84 ~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~---~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~--p~~~~~--  156 (197)
                      ..++..+|..+.. .|+.++|+++|.++.......   .+++.++-.+.+..+ ++.....++.++-.+-  +.++..  
T Consensus        36 r~~~~~l~~~~~~-~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~-d~~~v~~~i~ka~~~~~~~~d~~~~n  113 (177)
T PF10602_consen   36 RMALEDLADHYCK-IGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFG-DWSHVEKYIEKAESLIEKGGDWERRN  113 (177)
T ss_pred             HHHHHHHHHHHHH-hhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhccchHHHHH
Confidence            3577899988887 999999999999987754322   245556666666667 5999999999987663  333332  


Q ss_pred             --HHHHHHHHHHcCCccccccCCCcc
Q 029199          157 --HASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       157 --~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                        ...-|..+...++|.+|...|-..
T Consensus       114 rlk~~~gL~~l~~r~f~~AA~~fl~~  139 (177)
T PF10602_consen  114 RLKVYEGLANLAQRDFKEAAELFLDS  139 (177)
T ss_pred             HHHHHHHHHHHHhchHHHHHHHHHcc
Confidence              234566677789999987666654

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.83  E-value=2  Score=38.87  Aligned_cols=87  Identities=11%  Similarity=0.036  Sum_probs=69.6

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 029199           62 SGGDSQGVEEYYKKMVEENPGN------PLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHND  135 (197)
Q Consensus        62 ~~g~~~~A~~~~~~al~~~P~~------~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~  135 (197)
                      ...+|..+++.|...++.-|.|      .....++..+|.. ..+.++|.+.++.|-+.+|.++.-....-.....-+. 
T Consensus       366 ~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~-L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~-  443 (872)
T KOG4814|consen  366 KMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLK-LEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDK-  443 (872)
T ss_pred             HHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcc-
Confidence            3489999999999999988776      3455677866666 9999999999999999999999887777655555454 


Q ss_pred             HHHHHHHHHHHHHhC
Q 029199          136 QDRAATYYERAVHAS  150 (197)
Q Consensus       136 ~~~A~~~~~~al~~~  150 (197)
                      -++|+.++.+.....
T Consensus       444 Se~AL~~~~~~~s~~  458 (872)
T KOG4814|consen  444 SEEALTCLQKIKSSE  458 (872)
T ss_pred             hHHHHHHHHHHHhhh
Confidence            789999988876553

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=91.60  E-value=0.39  Score=44.58  Aligned_cols=102  Identities=20%  Similarity=0.208  Sum_probs=65.1

Q ss_pred             CCCHHHHHHHHHHH----------HHhCCC----------CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 029199           63 GGDSQGVEEYYKKM----------VEENPG----------NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEIL  122 (197)
Q Consensus        63 ~g~~~~A~~~~~~a----------l~~~P~----------~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~  122 (197)
                      .+|.+.|+++|+++          |..+|.          ++..|.-.|..+-. .|+.+.|+..|..|-.        |
T Consensus       871 r~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES-~GemdaAl~~Y~~A~D--------~  941 (1416)
T KOG3617|consen  871 RRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLES-VGEMDAALSFYSSAKD--------Y  941 (1416)
T ss_pred             hccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhc-ccchHHHHHHHHHhhh--------h
Confidence            58889999999876          333443          34445555644443 7888888888877653        3


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCc
Q 029199          123 SQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSE  179 (197)
Q Consensus       123 ~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~  179 (197)
                      +.+-.+.+-+|+ .++|...-+     ...|-.+.|.+|..|...|+..+|+..|-+
T Consensus       942 fs~VrI~C~qGk-~~kAa~iA~-----esgd~AAcYhlaR~YEn~g~v~~Av~FfTr  992 (1416)
T KOG3617|consen  942 FSMVRIKCIQGK-TDKAARIAE-----ESGDKAACYHLARMYENDGDVVKAVKFFTR  992 (1416)
T ss_pred             hhheeeEeeccC-chHHHHHHH-----hcccHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            444444444454 566654333     356677778888888888888887666655

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=91.46  E-value=0.26  Score=24.71  Aligned_cols=24  Identities=17%  Similarity=0.131  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHH
Q 029199          120 EILSQYAKLVWELHNDQDRAATYYE  144 (197)
Q Consensus       120 ~~~~~lg~~l~~~~~~~~~A~~~~~  144 (197)
                      .+.+++|.++...| ++++|...++
T Consensus         2 ~a~~~la~~~~~~G-~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQG-DPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcC-CHHHHHHHHh
Confidence            34566666666655 3666666654

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=91.33  E-value=1.6  Score=34.19  Aligned_cols=63  Identities=16%  Similarity=0.191  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHH
Q 029199           66 SQGVEEYYKKMVEENPG------NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGD-GEILSQYAKLV  129 (197)
Q Consensus        66 ~~~A~~~~~~al~~~P~------~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~-~~~~~~lg~~l  129 (197)
                      +..|++.|++++.....      ...+.+.+|.+.++ .|++++|..+|.+++..--.+ +..+.+++.=+
T Consensus       141 l~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rr-lg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR~~  210 (214)
T PF09986_consen  141 LRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRR-LGNYDEAKRWFSRVIGSKKASKEPKLKDMARDQ  210 (214)
T ss_pred             HHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHH
Confidence            45677777777765533      24577778866666 999999999999999743222 23555555433

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=91.06  E-value=0.24  Score=41.36  Aligned_cols=110  Identities=13%  Similarity=0.039  Sum_probs=84.7

Q ss_pred             cCCCCCHHHHHHHHHHHHHhCC-----------C--------CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 029199           60 AGSGGDSQGVEEYYKKMVEENP-----------G--------NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGE  120 (197)
Q Consensus        60 ~~~~g~~~~A~~~~~~al~~~P-----------~--------~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~  120 (197)
                      ....++++.|..-|.++++.--           +        -.....+++.+-.. .+.+..|+..-..+++.++....
T Consensus       232 ~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk-~~~~~~a~~~~~~~~~~~~s~tk  310 (372)
T KOG0546|consen  232 EFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLK-VKGRGGARFRTNEALRDERSKTK  310 (372)
T ss_pred             hhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhccc-ccCCCcceeccccccccChhhCc
Confidence            4445888899888888875321           1        11234456655555 78888999888888889999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcc
Q 029199          121 ILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDN  171 (197)
Q Consensus       121 ~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~  171 (197)
                      ++|..+..+..+.+ +++|++.++.+....|++..+...+..+-....++.
T Consensus       311 a~~Rr~~~~~~~~~-~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~~  360 (372)
T KOG0546|consen  311 AHYRRGQAYKLLKN-YDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQYN  360 (372)
T ss_pred             HHHHHHhHHHhhhc-hhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHHH
Confidence            99999999999885 999999999999999999988777766655554443

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=90.91  E-value=2.9  Score=37.13  Aligned_cols=113  Identities=17%  Similarity=0.262  Sum_probs=73.1

Q ss_pred             HHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHcCCHHHHHHHH
Q 029199           66 SQGVEEYYKKMVEENPGNPL-FLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDG-EILSQYAKLVWELHNDQDRAATYY  143 (197)
Q Consensus        66 ~~~A~~~~~~al~~~P~~~~-~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~-~~~~~lg~~l~~~~~~~~~A~~~~  143 (197)
                      .+.-...|++++.+.-.+++ +|.++-++..+ ..=.+.|+..|.+|=+ ++..+ .++..-|.+-+...+|.+-|...|
T Consensus       347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR-~eGlkaaR~iF~kaR~-~~r~~hhVfVa~A~mEy~cskD~~~AfrIF  424 (656)
T KOG1914|consen  347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRR-AEGLKAARKIFKKARE-DKRTRHHVFVAAALMEYYCSKDKETAFRIF  424 (656)
T ss_pred             hhhhHHHHHHHHhhhccCCceehhHHHHHHHH-hhhHHHHHHHHHHHhh-ccCCcchhhHHHHHHHHHhcCChhHHHHHH
Confidence            44455566666655433332 44555555555 5556677777777744 44333 455555555555555677888888


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          144 ERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       144 ~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      +-.|+..++.|..-..+...+..+++...+...|+++
T Consensus       425 eLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~  461 (656)
T KOG1914|consen  425 ELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERV  461 (656)
T ss_pred             HHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHH
Confidence            8888888888888888888888888877777777775

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=90.76  E-value=6.9  Score=33.12  Aligned_cols=95  Identities=16%  Similarity=0.239  Sum_probs=64.4

Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------------C------------CCCHH---HHHHH
Q 029199           75 KMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILA--------------D------------PGDGE---ILSQY  125 (197)
Q Consensus        75 ~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l--------------~------------P~~~~---~~~~l  125 (197)
                      ..++.+|-+.+.+..++.++.. +|+.+.|.+.+++||=.              +            |.|-.   +.+.+
T Consensus        31 ~ll~~~PyHidtLlqls~v~~~-~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~  109 (360)
T PF04910_consen   31 NLLQKNPYHIDTLLQLSEVYRQ-QGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRY  109 (360)
T ss_pred             HHHHHCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHH
Confidence            4467889999999999977776 99999999988888532              1            11222   23333


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH-HHcCCcc
Q 029199          126 AKLVWELHNDQDRAATYYERAVHASPE-DSHVHASYAGFL-WETEEDN  171 (197)
Q Consensus       126 g~~l~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~-~~~g~~~  171 (197)
                      ...+.+.| -+..|.++.+-.+.+||. ||.........| .+.++++
T Consensus       110 i~~L~~RG-~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~  156 (360)
T PF04910_consen  110 IQSLGRRG-CWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQ  156 (360)
T ss_pred             HHHHHhcC-cHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHH
Confidence            44555545 588999999999999998 776544444443 3344444

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=90.44  E-value=3.5  Score=26.94  Aligned_cols=54  Identities=9%  Similarity=0.066  Sum_probs=36.1

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH---HHHHHcCCHHHHHHHHHH
Q 029199           90 YAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAK---LVWELHNDQDRAATYYER  145 (197)
Q Consensus        90 la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~---~l~~~~~~~~~A~~~~~~  145 (197)
                      -|.-+|. ..+.++|+..++++|+..++.+.-+..+|.   ++...|+ +.+.+++--+
T Consensus        12 ~GlkLY~-~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gk-yr~~L~fA~~   68 (80)
T PF10579_consen   12 KGLKLYH-QNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGK-YREMLAFALQ   68 (80)
T ss_pred             HHHHHhc-cchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence            3444555 788888888888888888888776666664   4555554 5555554333

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=90.42  E-value=1.5  Score=31.18  Aligned_cols=81  Identities=12%  Similarity=0.024  Sum_probs=60.0

Q ss_pred             cCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------hCCCCHHH--
Q 029199           98 KQDLPKAEEYYSRAILADPG------------DGEILSQYAKLVWELHNDQDRAATYYERAVH-------ASPEDSHV--  156 (197)
Q Consensus        98 ~g~~~~A~~~~~~al~l~P~------------~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~-------~~p~~~~~--  156 (197)
                      .|-|++|...+++|+...-.            |...+-.++.++..+|+ |++++..-+++|.       ++.+....  
T Consensus        22 ~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgr-y~e~L~sA~~aL~YFNRRGEL~qdeGklWI  100 (144)
T PF12968_consen   22 DGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGR-YDECLQSADRALRYFNRRGELHQDEGKLWI  100 (144)
T ss_dssp             HT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHH--TTSTHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHHHhhccccccccchhHH
Confidence            58999999999999987422            33456667788899996 8988887777775       34444444  


Q ss_pred             --HHHHHHHHHHcCCccccccCCCc
Q 029199          157 --HASYAGFLWETEEDNDECDAPSE  179 (197)
Q Consensus       157 --~~~la~~~~~~g~~~ea~~~~~~  179 (197)
                        .++.+..+..+|+.+||...|+.
T Consensus       101 aaVfsra~Al~~~Gr~~eA~~~fr~  125 (144)
T PF12968_consen  101 AAVFSRAVALEGLGRKEEALKEFRM  125 (144)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCChHHHHHHHHH
Confidence              47889999999999999888765

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=90.40  E-value=3.5  Score=36.84  Aligned_cols=114  Identities=15%  Similarity=0.214  Sum_probs=88.6

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 029199           65 DSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYE  144 (197)
Q Consensus        65 ~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~  144 (197)
                      +.+.+...|...|...|..-..|..+|..=++ .|..+.+...|+++++--|-....|..+-..+....++.+.-...|+
T Consensus        60 ~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~k-lg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe  138 (577)
T KOG1258|consen   60 DVDALREVYDIFLSKYPLCYGYWKKFADYEYK-LGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFE  138 (577)
T ss_pred             HHHHHHHHHHHHHhhCccHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence            34677778888899999999999999966666 99999999999999999999999999998888887777778888899


Q ss_pred             HHHHhCCCC---HHHHHHHHHHHHHcCCccccccCCCc
Q 029199          145 RAVHASPED---SHVHASYAGFLWETEEDNDECDAPSE  179 (197)
Q Consensus       145 ~al~~~p~~---~~~~~~la~~~~~~g~~~ea~~~~~~  179 (197)
                      +|+.....+   ...|..+-.....+++...-...+++
T Consensus       139 ~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeR  176 (577)
T KOG1258|consen  139 RAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYER  176 (577)
T ss_pred             HHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHH
Confidence            998876443   34555555555455555544444444

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=89.88  E-value=1.7  Score=35.69  Aligned_cols=47  Identities=21%  Similarity=0.133  Sum_probs=24.8

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 029199           98 KQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYER  145 (197)
Q Consensus        98 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~  145 (197)
                      .|.+.+|+++.++++++||-+.+.+..+-.+|..+|. --.+..+|++
T Consensus       292 ~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD-~is~~khyer  338 (361)
T COG3947         292 AGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGD-EISAIKHYER  338 (361)
T ss_pred             cCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhcc-chhhhhHHHH
Confidence            5555555555555555555555555555555555452 2344444443

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=89.73  E-value=3.7  Score=39.12  Aligned_cols=135  Identities=17%  Similarity=0.101  Sum_probs=92.6

Q ss_pred             HHHHHHHhhhcCcccccCCCCh---hhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHH
Q 029199            9 EVKVMEALWNAGFEQERGTVGQ---EMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPL   85 (197)
Q Consensus         9 ~~~~~~a~~~~~~~~~~~p~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~   85 (197)
                      +.-+..|+..|..--+..|+..   |..+..|+.+-.-....             .....+++|+..|++. .-.|.-|-
T Consensus       488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~-~~~~~~~~  553 (932)
T PRK13184        488 EKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQ-------------GDPRDFTQALSEFSYL-HGGVGAPL  553 (932)
T ss_pred             hHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhc-------------CChHHHHHHHHHHHHh-cCCCCCch
Confidence            4567788888888878888764   67788888864321100             0013678888888884 45577777


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhCCCCHHHHH
Q 029199           86 FLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHN----DQDRAATYYERAVHASPEDSHVHA  158 (197)
Q Consensus        86 ~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~----~~~~A~~~~~~al~~~p~~~~~~~  158 (197)
                      -|..-|.+|. ++|++++-+++|.-|++..|+.|.+-...-.+.+.+..    +-..|....--++.+-|.....-.
T Consensus       554 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  629 (932)
T PRK13184        554 EYLGKALVYQ-RLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEKISSRE  629 (932)
T ss_pred             HHHhHHHHHH-HhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccchH
Confidence            7888885544 49999999999999999999999765443333222211    124677888888888888665433

>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]

Probab=89.71  E-value=2.8  Score=32.23  Aligned_cols=97  Identities=21%  Similarity=0.247  Sum_probs=68.3

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-----
Q 029199           64 GDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQS----KQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHN-----  134 (197)
Q Consensus        64 g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~----~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~-----  134 (197)
                      .++++|.+.|..-...+ ..+..-+.+|..++.-    .++...|++.|+.+-.  -+++.+-.++|.+++. |.     
T Consensus        49 knF~~A~kv~K~nCden-~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~aC~~~gLl~~~-g~~~r~~  124 (248)
T KOG4014|consen   49 KNFQAAVKVFKKNCDEN-SYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQACRYLGLLHWN-GEKDRKA  124 (248)
T ss_pred             HHHHHHHHHHHhccccc-CCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHHHhhhhhhhcc-CcCCccC
Confidence            66777777776654443 3566667788443321    1278999999999875  5688999999987765 32     


Q ss_pred             --CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 029199          135 --DQDRAATYYERAVHASPEDSHVHASYAGFLWE  166 (197)
Q Consensus       135 --~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  166 (197)
                        +.++|++++.++..+  ++..+.++|.-.+..
T Consensus       125 dpd~~Ka~~y~traCdl--~~~~aCf~LS~m~~~  156 (248)
T KOG4014|consen  125 DPDSEKAERYMTRACDL--EDGEACFLLSTMYMG  156 (248)
T ss_pred             CCCcHHHHHHHHHhccC--CCchHHHHHHHHHhc
Confidence              367999999998765  467777777776644

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=89.17  E-value=3.6  Score=39.20  Aligned_cols=96  Identities=13%  Similarity=0.038  Sum_probs=73.9

Q ss_pred             ccCCCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhc---C---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 029199           59 PAGSGGDSQGVEEYYKKMVEENPGN---PLFLSNYAQFLYQSK---Q---DLPKAEEYYSRAILADPGDGEILSQYAKLV  129 (197)
Q Consensus        59 ~~~~~g~~~~A~~~~~~al~~~P~~---~~~~~~la~~l~~~~---g---~~~~A~~~~~~al~l~P~~~~~~~~lg~~l  129 (197)
                      .+...+.|+.|+..|++...-.|.-   -++.+..|..+..+.   |   .+.+|+.-|++.. -.|.-|-=+...|.+|
T Consensus       484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  562 (932)
T PRK13184        484 AFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGKALVY  562 (932)
T ss_pred             HHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhHHHHH
Confidence            4445588999999999988888875   446777775555422   2   4677777777754 3677787788888899


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 029199          130 WELHNDQDRAATYYERAVHASPEDSHV  156 (197)
Q Consensus       130 ~~~~~~~~~A~~~~~~al~~~p~~~~~  156 (197)
                      ..++ ++++-+++|.-|++..|.+|.+
T Consensus       563 ~~~~-~~~~~~~~~~~~~~~~~~~~~~  588 (932)
T PRK13184        563 QRLG-EYNEEIKSLLLALKRYSQHPEI  588 (932)
T ss_pred             HHhh-hHHHHHHHHHHHHHhcCCCCcc
Confidence            9988 5999999999999999988865

>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]

Probab=88.75  E-value=1.5  Score=36.85  Aligned_cols=102  Identities=13%  Similarity=0.033  Sum_probs=57.8

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 029199           64 GDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYY  143 (197)
Q Consensus        64 g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~  143 (197)
                      .+..+-++.-..++++||..+.++..|+.-   ...-..+|++.+++||+.-    +..++........+. ..+|    
T Consensus       198 Rnp~~RI~~A~~ALeIN~eCA~AyvLLAEE---Ea~Ti~~AE~l~k~ALka~----e~~yr~sqq~qh~~~-~~da----  265 (556)
T KOG3807|consen  198 RNPPARIKAAYQALEINNECATAYVLLAEE---EATTIVDAERLFKQALKAG----ETIYRQSQQCQHQSP-QHEA----  265 (556)
T ss_pred             cCcHHHHHHHHHHHhcCchhhhHHHhhhhh---hhhhHHHHHHHHHHHHHHH----HHHHhhHHHHhhhcc-chhh----
Confidence            445556777888999999999999887732   2345788888998888742    222222222222121 1111    


Q ss_pred             HHHHHhCCCCHHH--HHHHHHHHHHcCCccccccCCCcc
Q 029199          144 ERAVHASPEDSHV--HASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       144 ~~al~~~p~~~~~--~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                         ......|..+  -..+++|-.++|+..||.+.++.+
T Consensus       266 ---~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL  301 (556)
T KOG3807|consen  266 ---QLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDL  301 (556)
T ss_pred             ---hhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence               1112223322  345666666677776666555543

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=87.93  E-value=6.4  Score=35.65  Aligned_cols=113  Identities=12%  Similarity=0.115  Sum_probs=76.0

Q ss_pred             HHHHHHHHHHHHH-hCCC---CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC--CCHHH----HHHHHHHHHHHcCC
Q 029199           66 SQGVEEYYKKMVE-ENPG---NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADP--GDGEI----LSQYAKLVWELHND  135 (197)
Q Consensus        66 ~~~A~~~~~~al~-~~P~---~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P--~~~~~----~~~lg~~l~~~~~~  135 (197)
                      ...|++|++-+++ ..+.   .+.+++.+|.+++..+.+++.|+.+++|++.+..  +-.+.    .+.++.++.+.+. 
T Consensus        37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~-  115 (608)
T PF10345_consen   37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNP-  115 (608)
T ss_pred             HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCH-
Confidence            3567888888885 2222   2457889999999889999999999999988764  33332    3345677777553 


Q ss_pred             HHHHHHHHHHHHHhCCC----CHHHHHHHHHH--HHHcCCccccccCCCcc
Q 029199          136 QDRAATYYERAVHASPE----DSHVHASYAGF--LWETEEDNDECDAPSEL  180 (197)
Q Consensus       136 ~~~A~~~~~~al~~~p~----~~~~~~~la~~--~~~~g~~~ea~~~~~~~  180 (197)
                       ..|...+++.++..-+    .+...+.+-.+  ....+++..|++.++.+
T Consensus       116 -~~a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~  165 (608)
T PF10345_consen  116 -KAALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSI  165 (608)
T ss_pred             -HHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence             4599999999887544    23333333322  22236777777777765

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]

Probab=87.85  E-value=11  Score=29.13  Aligned_cols=99  Identities=17%  Similarity=0.135  Sum_probs=71.4

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc----C--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH----
Q 029199           63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSK----Q--DLPKAEEYYSRAILADPGDGEILSQYAKLVWEL----  132 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~----g--~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~----  132 (197)
                      .+++..|+++|..+..  -+++.+-.++|.++....    +  +..+|++++.++-.++  +.++-+++...+..-    
T Consensus        86 ~~~l~~a~r~~~~aC~--~n~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~~~g~~k~  161 (248)
T KOG4014|consen   86 DASLSKAIRPMKIACD--ANIPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLE--DGEACFLLSTMYMGGKEKF  161 (248)
T ss_pred             ccCHHHHHHHHHHHhc--cCCHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCC--CchHHHHHHHHHhccchhh
Confidence            4789999999998876  567888888885554311    1  4789999999998664  666666666554431    


Q ss_pred             -------------------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 029199          133 -------------------HNDQDRAATYYERAVHASPEDSHVHASYAGFLWET  167 (197)
Q Consensus       133 -------------------~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  167 (197)
                                         .+|.++|.++--+|.+++  ++.+.-|+...|..-
T Consensus       162 ~t~ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel~--~~~aCAN~SrMyklG  213 (248)
T KOG4014|consen  162 KTNAPGEGKPLDRAELGSLSKDMDKALQFAIKACELD--IPQACANVSRMYKLG  213 (248)
T ss_pred             cccCCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhcC--ChHHHhhHHHHHHcc
Confidence                               136788888888887664  678888888887654

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=87.75  E-value=2.5  Score=34.51  Aligned_cols=51  Identities=14%  Similarity=0.119  Sum_probs=47.1

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 029199           63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILA  114 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l  114 (197)
                      .|+++.++..+++.+..+|-+..+|..+-..++. .|+...|+..|++.-++
T Consensus       166 ~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~-~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         166 CGRADAVIEHLERLIELDPYDEPAYLRLMEAYLV-NGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             cccHHHHHHHHHHHHhcCccchHHHHHHHHHHHH-cCCchHHHHHHHHHHHH
Confidence            4899999999999999999999999998878887 99999999999998775

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=87.18  E-value=1.7  Score=28.42  Aligned_cols=52  Identities=6%  Similarity=0.031  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH---HHHHHcCCcccccc
Q 029199          123 SQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYA---GFLWETEEDNDECD  175 (197)
Q Consensus       123 ~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la---~~~~~~g~~~ea~~  175 (197)
                      ...|.-++... +.++|+..++++|+..++.+.-+..+|   .++...|++.+.++
T Consensus        10 ie~GlkLY~~~-~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~   64 (80)
T PF10579_consen   10 IEKGLKLYHQN-ETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA   64 (80)
T ss_pred             HHHHHHHhccc-hHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455567756 489999999999999988777665555   56788899988653

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=86.78  E-value=4.7  Score=29.41  Aligned_cols=50  Identities=22%  Similarity=0.130  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 029199           84 PLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHN  134 (197)
Q Consensus        84 ~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~  134 (197)
                      .+.....+.-.+. .|++.-|.++.+.++..+|+|..+....+.+|.+++.
T Consensus        70 ~d~vl~~A~~~~~-~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~  119 (141)
T PF14863_consen   70 ADKVLERAQAALA-AGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY  119 (141)
T ss_dssp             HHHHHHHHHHHHH-CT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-CCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence            3445556656666 8999999999999999999999999998888887763

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=86.63  E-value=1.7  Score=24.16  Aligned_cols=30  Identities=20%  Similarity=0.343  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 029199          120 EILSQYAKLVWELHNDQDRAATYYERAVHAS  150 (197)
Q Consensus       120 ~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~  150 (197)
                      +++..+|.+-...++ |++|++-|+++|.+.
T Consensus         2 dv~~~Lgeisle~e~-f~qA~~D~~~aL~i~   31 (38)
T PF10516_consen    2 DVYDLLGEISLENEN-FEQAIEDYEKALEIQ   31 (38)
T ss_pred             cHHHHHHHHHHHhcc-HHHHHHHHHHHHHHH
Confidence            467788988888774 999999999999874

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised

Probab=86.61  E-value=6.4  Score=29.86  Aligned_cols=45  Identities=24%  Similarity=0.362  Sum_probs=26.5

Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 029199          105 EEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASP  151 (197)
Q Consensus       105 ~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p  151 (197)
                      ++..++.++..| ++.++.+++.++...|+ .++|.+..+++..+.|
T Consensus       131 ~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~-~~eA~~~~~~~~~lyP  175 (193)
T PF11846_consen  131 IEWAERLLRRRP-DPNVYQRYALALALLGD-PEEARQWLARARRLYP  175 (193)
T ss_pred             HHHHHHHHHhCC-CHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCC
Confidence            444455555555 55555666666666553 5666666666666666

This domain is found in bacteria. This presumed domain is about 200 amino acids in length.

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=84.63  E-value=10  Score=29.04  Aligned_cols=121  Identities=10%  Similarity=0.025  Sum_probs=85.3

Q ss_pred             ccCCCCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHH
Q 029199           59 PAGSGGDSQGVEEYYKKMVEENPGNPL--FLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGE-----ILSQYAKLVWE  131 (197)
Q Consensus        59 ~~~~~g~~~~A~~~~~~al~~~P~~~~--~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~-----~~~~lg~~l~~  131 (197)
                      .+.+.+..++|+..|..+-+-.-..-.  +....+.+... .|+...|+..|..+-.-.| .|.     +...-+.++..
T Consensus        67 ~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~-kgdta~AV~aFdeia~dt~-~P~~~rd~ARlraa~lLvD  144 (221)
T COG4649          67 KLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQ-KGDTAAAVAAFDEIAADTS-IPQIGRDLARLRAAYLLVD  144 (221)
T ss_pred             HHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhh-cccHHHHHHHHHHHhccCC-CcchhhHHHHHHHHHHHhc
Confidence            345568889999999887666544433  34455656555 9999999999999876443 343     34445667777


Q ss_pred             HcCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcCCccccccCCCcccc
Q 029199          132 LHNDQDRAATYYERAV-HASPEDSHVHASYAGFLWETEEDNDECDAPSELDS  182 (197)
Q Consensus       132 ~~~~~~~A~~~~~~al-~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~~~  182 (197)
                      .|- |++-....+..- ..+|-...+.-.||..-++.|++.+|...|..+..
T Consensus       145 ~gs-y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         145 NGS-YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             ccc-HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence            664 877666665542 33455566778899999999999999999988743

>PF12854 PPR_1: PPR repeat

Probab=84.56  E-value=0.62  Score=24.99  Aligned_cols=26  Identities=4%  Similarity=-0.081  Sum_probs=13.7

Q ss_pred             HHHHHHHHHHHHHcCCccccccCCCc
Q 029199          154 SHVHASYAGFLWETEEDNDECDAPSE  179 (197)
Q Consensus       154 ~~~~~~la~~~~~~g~~~ea~~~~~~  179 (197)
                      ...|..+...+.+.|+.++|.+.|++
T Consensus         7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~   32 (34)
T PF12854_consen    7 VVTYNTLIDGYCKAGRVDEAFELFDE   32 (34)
T ss_pred             HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence            44455555555555555555555443

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=84.47  E-value=3.4  Score=32.70  Aligned_cols=58  Identities=19%  Similarity=0.073  Sum_probs=49.8

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 029199           62 SGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGE  120 (197)
Q Consensus        62 ~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~  120 (197)
                      +.+...++++..+.-++.+|.+.....-|-.++.. .|++++|...++-+-++.|++..
T Consensus        13 ~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcv-aGdw~kAl~Ql~l~a~l~p~~t~   70 (273)
T COG4455          13 DDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCV-AGDWEKALAQLNLAATLSPQDTV   70 (273)
T ss_pred             HhccHHHHHHHHHHHHhcCCccccchhHHHHHHhh-cchHHHHHHHHHHHhhcCcccch
Confidence            34788999999999999999998887777767666 89999999999999999997753

>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein

Probab=84.27  E-value=4.2  Score=21.03  Aligned_cols=26  Identities=12%  Similarity=0.164  Sum_probs=13.0

Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHH
Q 029199          140 ATYYERAVHASPEDSHVHASYAGFLW  165 (197)
Q Consensus       140 ~~~~~~al~~~p~~~~~~~~la~~~~  165 (197)
                      +++...++..+|.|..+|..+-.++.
T Consensus         3 l~~~~~~l~~~pknys~W~yR~~ll~   28 (31)
T PF01239_consen    3 LEFTKKALEKDPKNYSAWNYRRWLLK   28 (31)
T ss_dssp             HHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCcccccHHHHHHHHHH
Confidence            34444555555555555555544443

Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=83.99  E-value=1.8  Score=35.59  Aligned_cols=52  Identities=13%  Similarity=0.008  Sum_probs=45.4

Q ss_pred             cCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 029199           60 AGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAI  112 (197)
Q Consensus        60 ~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al  112 (197)
                      |...|.+.+|++..+++++++|-+...+..+-.++.. .|+--.+...|++--
T Consensus       289 yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~-~gD~is~~khyerya  340 (361)
T COG3947         289 YLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLAT-LGDEISAIKHYERYA  340 (361)
T ss_pred             HHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHH-hccchhhhhHHHHHH
Confidence            3446999999999999999999999999999888887 999888888887643

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=83.73  E-value=9.1  Score=30.96  Aligned_cols=76  Identities=18%  Similarity=0.125  Sum_probs=55.2

Q ss_pred             cCCHHHHHHHHHHHHHhC-CCCH-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CC---CC-------HH
Q 029199           98 KQDLPKAEEYYSRAILAD-PGDG-------EILSQYAKLVWELHNDQDRAATYYERAVHA----SP---ED-------SH  155 (197)
Q Consensus        98 ~g~~~~A~~~~~~al~l~-P~~~-------~~~~~lg~~l~~~~~~~~~A~~~~~~al~~----~p---~~-------~~  155 (197)
                      .|+++.|..++.|+-.+. ..+|       ...++.|.-++..+.+++.|..++++++++    .+   ..       ..
T Consensus         6 ~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~   85 (278)
T PF08631_consen    6 QGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLS   85 (278)
T ss_pred             hCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHH
Confidence            799999999999988765 4444       346666766667551489999999999988    21   11       23


Q ss_pred             HHHHHHHHHHHcCCcccc
Q 029199          156 VHASYAGFLWETEEDNDE  173 (197)
Q Consensus       156 ~~~~la~~~~~~g~~~ea  173 (197)
                      ++..++.++...+.++..
T Consensus        86 iL~~La~~~l~~~~~~~~  103 (278)
T PF08631_consen   86 ILRLLANAYLEWDTYESV  103 (278)
T ss_pred             HHHHHHHHHHcCCChHHH
Confidence            567888888888876654

It is also involved in sporulation [].

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=83.50  E-value=5.9  Score=35.00  Aligned_cols=108  Identities=13%  Similarity=0.075  Sum_probs=73.3

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Q 029199           63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILAD-PGDGEILSQYAKLVWELHNDQDRAAT  141 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~l~~~~~~~~~A~~  141 (197)
                      .|+.-.|-+-...+++..|.+|......+ .++...|+|+.+.+.+.-+-..- ..+......+ .-++.+++ +++|..
T Consensus       302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~-~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~-r~~~~l~r-~~~a~s  378 (831)
T PRK15180        302 DGDIIAASQQLFAALRNQQQDPVLIQLRS-VIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRL-RSLHGLAR-WREALS  378 (831)
T ss_pred             ccCHHHHHHHHHHHHHhCCCCchhhHHHH-HHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHH-Hhhhchhh-HHHHHH
Confidence            38888888889999999999998777777 44445999999988875554433 3333333333 45677787 888888


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCcccc
Q 029199          142 YYERAVHASPEDSHVHASYAGFLWETEEDNDE  173 (197)
Q Consensus       142 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea  173 (197)
                      .-+-.|...=+++++..--+..-..+|=+|++
T Consensus       379 ~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~  410 (831)
T PRK15180        379 TAEMMLSNEIEDEEVLTVAAGSADALQLFDKS  410 (831)
T ss_pred             HHHHHhccccCChhheeeecccHHHHhHHHHH
Confidence            88877766666666554444444444444444

>PF13226 DUF4034: Domain of unknown function (DUF4034)

Probab=83.43  E-value=20  Score=29.23  Aligned_cols=110  Identities=10%  Similarity=-0.031  Sum_probs=72.0

Q ss_pred             CCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHH---HHHhcCCH---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc-
Q 029199           63 GGDSQGVEEYYKKMVEENPG--NPLFLSNYAQF---LYQSKQDL---PKAEEYYSRAILADPGDGEILSQYAKLVWELH-  133 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~P~--~~~~~~~la~~---l~~~~g~~---~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~-  133 (197)
                      .++|++-.+.|.+..+...+  ..+..+..+..   ++......   ..-.+.++..++..|++..++..+|..+.... 
T Consensus        13 ~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~~~~~~Aw   92 (277)
T PF13226_consen   13 ARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGMYWVHRAW   92 (277)
T ss_pred             hCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH
Confidence            47888888888877654332  11111111111   11201111   24677888999999999999998886643211 


Q ss_pred             --------------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccc
Q 029199          134 --------------------NDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDND  172 (197)
Q Consensus       134 --------------------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~e  172 (197)
                                          .-.++|..++.+|++++|....+...+-.+-...|+.+=
T Consensus        93 ~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fgeP~W  151 (277)
T PF13226_consen   93 DIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMINISAYFGEPDW  151 (277)
T ss_pred             HHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCCchH
Confidence                                125789999999999999999998888877777776654

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=83.35  E-value=17  Score=27.37  Aligned_cols=86  Identities=16%  Similarity=0.045  Sum_probs=59.7

Q ss_pred             CCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCCHHHHH----HHHHHHHHHc
Q 029199           63 GGDSQGVEEYYKKMVEENPGN---PLFLSNYAQFLYQSKQDLPKAEEYYSRAILAD--PGDGEILS----QYAKLVWELH  133 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~P~~---~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~--P~~~~~~~----~lg~~l~~~~  133 (197)
                      .|++++|+++|.++.......   ...++++-.+... .+++.....+..++-.+-  +.+.+...    .-|..+...+
T Consensus        49 ~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~-~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~gL~~l~~r  127 (177)
T PF10602_consen   49 IGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIF-FGDWSHVEKYIEKAESLIEKGGDWERRNRLKVYEGLANLAQR  127 (177)
T ss_pred             hhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhc
Confidence            499999999999987765443   3355566666666 899999999998887653  33343332    2354555545


Q ss_pred             CCHHHHHHHHHHHHHhC
Q 029199          134 NDQDRAATYYERAVHAS  150 (197)
Q Consensus       134 ~~~~~A~~~~~~al~~~  150 (197)
                       +|.+|.+.|-.++.-.
T Consensus       128 -~f~~AA~~fl~~~~t~  143 (177)
T PF10602_consen  128 -DFKEAAELFLDSLSTF  143 (177)
T ss_pred             -hHHHHHHHHHccCcCC
Confidence             6999999988775443

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=82.66  E-value=4.8  Score=37.07  Aligned_cols=32  Identities=19%  Similarity=0.148  Sum_probs=23.8

Q ss_pred             hCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          149 ASPEDSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       149 ~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      .-|++...+-.+|..+...|--++|++.|-+.
T Consensus       847 ~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~  878 (1189)
T KOG2041|consen  847 TLPEDSELLPVMADMFTSVGMCDQAVEAYLRR  878 (1189)
T ss_pred             hcCcccchHHHHHHHHHhhchHHHHHHHHHhc
Confidence            34777888888888888888888887666553

>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised

Probab=82.30  E-value=7.9  Score=29.36  Aligned_cols=47  Identities=23%  Similarity=0.350  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 029199           68 GVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADP  116 (197)
Q Consensus        68 ~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P  116 (197)
                      ..++..++.++..| ++.++.+++.++.. .|+.++|.+..+++..+.|
T Consensus       129 ~~~~~a~~~l~~~P-~~~~~~~~a~~l~~-~G~~~eA~~~~~~~~~lyP  175 (193)
T PF11846_consen  129 AYIEWAERLLRRRP-DPNVYQRYALALAL-LGDPEEARQWLARARRLYP  175 (193)
T ss_pred             HHHHHHHHHHHhCC-CHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCC
Confidence            33344444444444 34444444433333 5555555555555555555

This domain is found in bacteria. This presumed domain is about 200 amino acids in length.

>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]

Probab=81.76  E-value=35  Score=32.10  Aligned_cols=104  Identities=11%  Similarity=0.069  Sum_probs=82.0

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--HHcCCHHHHHH
Q 029199           64 GDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVW--ELHNDQDRAAT  141 (197)
Q Consensus        64 g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~--~~~~~~~~A~~  141 (197)
                      +..+.-+.-++.-+.+++.+...+..|-.+++. .|++++-...-.++-++.|..+.+|.+...-..  ....+-.+..+
T Consensus        93 ~~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk-~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~  171 (881)
T KOG0128|consen   93 GGGNQEIRTLEEELAINSYKYAQMVQLIGLLRK-LGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEE  171 (881)
T ss_pred             ccchhHHHHHHHHhcccccchHHHHHHHHHHHH-hcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHH
Confidence            556667788888888999888888888878887 999999999989999999999999988765333  22334678888


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 029199          142 YYERAVHASPEDSHVHASYAGFLWETEE  169 (197)
Q Consensus       142 ~~~~al~~~p~~~~~~~~la~~~~~~g~  169 (197)
                      .|++++- +-+.+.+|..++..+...+.
T Consensus       172 ~~ekal~-dy~~v~iw~e~~~y~~~~~~  198 (881)
T KOG0128|consen  172 LFEKALG-DYNSVPIWEEVVNYLVGFGN  198 (881)
T ss_pred             HHHHHhc-ccccchHHHHHHHHHHhccc
Confidence            9999985 55667788888888777665

>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing

Probab=81.33  E-value=4.3  Score=21.66  Aligned_cols=26  Identities=42%  Similarity=0.524  Sum_probs=17.0

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 029199          136 QDRAATYYERAVHASPEDSHVHASYAG  162 (197)
Q Consensus       136 ~~~A~~~~~~al~~~p~~~~~~~~la~  162 (197)
                      ++.|...|++.+...|+ +..|..+|.
T Consensus         3 ~dRAR~IyeR~v~~hp~-~k~WikyAk   28 (32)
T PF02184_consen    3 FDRARSIYERFVLVHPE-VKNWIKYAK   28 (32)
T ss_pred             HHHHHHHHHHHHHhCCC-chHHHHHHH
Confidence            56777777777777654 566666554

They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular

>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]

Probab=81.30  E-value=8.4  Score=30.56  Aligned_cols=47  Identities=32%  Similarity=0.423  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHHH-----hCCCCHH---HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 029199           67 QGVEEYYKKMVE-----ENPGNPL---FLSNYAQFLYQSKQDLPKAEEYYSRAIL  113 (197)
Q Consensus        67 ~~A~~~~~~al~-----~~P~~~~---~~~~la~~l~~~~g~~~~A~~~~~~al~  113 (197)
                      +.|.++|++|+.     +.|.+|.   ...|++.++|...|+.++|++..++|+.
T Consensus       143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd  197 (236)
T PF00244_consen  143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD  197 (236)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred             HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            456666666654     3455544   3345566666666666666666666553

There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=81.25  E-value=13  Score=29.45  Aligned_cols=69  Identities=19%  Similarity=0.132  Sum_probs=57.2

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHH
Q 029199           93 FLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSH---VHASYAGF  163 (197)
Q Consensus        93 ~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~la~~  163 (197)
                      -+.+ .+...+++...+.-++-.|.+......+-.+|.-.| ++++|...++-+-++.|++..   .|.++..|
T Consensus        10 eLL~-~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaG-dw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~   81 (273)
T COG4455          10 ELLD-DNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAG-DWEKALAQLNLAATLSPQDTVGASLYRHLIRC   81 (273)
T ss_pred             HHHH-hccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcc-hHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence            4445 689999999999999999999999999988888877 699999999999999998653   34444444

>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]

Probab=81.10  E-value=18  Score=30.49  Aligned_cols=168  Identities=13%  Similarity=-0.022  Sum_probs=71.9

Q ss_pred             HHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCC-CCCCCCCC-----CcccCCCCCHHHHHHHHHHHHHhC-CC
Q 029199           10 VKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGG-GTGGGGSG-----FYPAGSGGDSQGVEEYYKKMVEEN-PG   82 (197)
Q Consensus        10 ~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~-----~~~~~~~g~~~~A~~~~~~al~~~-P~   82 (197)
                      +=+.|||..=......-|..|+++--..+.+-...+... .+.+...+     +-..-+.+-.+++...+.+++... |.
T Consensus       210 ~Lc~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW~r~lI~eg~all~rA~~~~~pG  289 (415)
T COG4941         210 DLCDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLWDRALIDEGLALLDRALASRRPG  289 (415)
T ss_pred             hHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhhhHHHHHHHHHHHHHHHHcCCCC
Confidence            344555555445555567777775554444322211100 00000000     001111245555555555555443 22


Q ss_pred             CHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHH
Q 029199           83 NPLFLSNYAQFLYQS----KQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHA--SPEDSHV  156 (197)
Q Consensus        83 ~~~~~~~la~~l~~~----~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~--~p~~~~~  156 (197)
                      --..--.++.+.-..    .-++..=..+|+-...+-| +|.+-.|.++++....+ .+.++...+....-  -..+...
T Consensus       290 PYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~ap-SPvV~LNRAVAla~~~G-p~agLa~ve~L~~~~~L~gy~~~  367 (415)
T COG4941         290 PYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAP-SPVVTLNRAVALAMREG-PAAGLAMVEALLARPRLDGYHLY  367 (415)
T ss_pred             hHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCC-CCeEeehHHHHHHHhhh-HHhHHHHHHHhhccccccccccc
Confidence            222222222222110    1244443444443333333 44555555555555554 44555554444432  1233344


Q ss_pred             HHHHHHHHHHcCCccccccCCCc
Q 029199          157 HASYAGFLWETEEDNDECDAPSE  179 (197)
Q Consensus       157 ~~~la~~~~~~g~~~ea~~~~~~  179 (197)
                      |.-.|.++.++|+.+||...|++
T Consensus       368 h~~RadlL~rLgr~~eAr~aydr  390 (415)
T COG4941         368 HAARADLLARLGRVEEARAAYDR  390 (415)
T ss_pred             HHHHHHHHHHhCChHHHHHHHHH
Confidence            55555566666666665555555

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=81.06  E-value=4.7  Score=29.39  Aligned_cols=53  Identities=17%  Similarity=0.167  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccc
Q 029199          119 GEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDND  172 (197)
Q Consensus       119 ~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~e  172 (197)
                      .+.....+.-.+..| ++.-|.+..+.++..+|+|..+..-.+.++.++|...+
T Consensus        70 ~d~vl~~A~~~~~~g-d~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~  122 (141)
T PF14863_consen   70 ADKVLERAQAALAAG-DYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE  122 (141)
T ss_dssp             HHHHHHHHHHHHHCT--HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred             HHHHHHHHHHHHHCC-CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence            344455555666646 69999999999999999999999999999999886655

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=81.06  E-value=3.7  Score=23.56  Aligned_cols=25  Identities=20%  Similarity=0.254  Sum_probs=16.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 029199          123 SQYAKLVWELHNDQDRAATYYERAVH  148 (197)
Q Consensus       123 ~~lg~~l~~~~~~~~~A~~~~~~al~  148 (197)
                      ++++.+|..+| |.+.|.+.++..+.
T Consensus         3 LdLA~ayie~G-d~e~Ar~lL~evl~   27 (44)
T TIGR03504         3 LDLARAYIEMG-DLEGARELLEEVIE   27 (44)
T ss_pred             hHHHHHHHHcC-ChHHHHHHHHHHHH
Confidence            45666666666 46666666666663

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=80.40  E-value=10  Score=32.86  Aligned_cols=104  Identities=13%  Similarity=0.031  Sum_probs=72.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhC--------CCC----------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 029199           61 GSGGDSQGVEEYYKKMVEEN--------PGN----------PLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEIL  122 (197)
Q Consensus        61 ~~~g~~~~A~~~~~~al~~~--------P~~----------~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~  122 (197)
                      ...++|..|.--|..+|++-        |..          +.+-..+..||.+ +++.+.|+..-.+.+.++|.++--+
T Consensus       187 yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~-~rkpdlALnh~hrsI~lnP~~frnH  265 (569)
T PF15015_consen  187 YRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLR-MRKPDLALNHSHRSINLNPSYFRNH  265 (569)
T ss_pred             HhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhh-cCCCchHHHHHhhhhhcCcchhhHH
Confidence            34577888888888887752        221          2233467767776 9999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHH
Q 029199          123 SQYAKLVWELHNDQDRAATYYERAV---HASPEDSHVHASYAGFLWE  166 (197)
Q Consensus       123 ~~lg~~l~~~~~~~~~A~~~~~~al---~~~p~~~~~~~~la~~~~~  166 (197)
                      ...+.+...+.+ |.+|..-+.-+.   .++..+..-...+...|+.
T Consensus       266 LrqAavfR~LeR-y~eAarSamia~ymywl~g~~~q~~S~lIklyWq  311 (569)
T PF15015_consen  266 LRQAAVFRRLER-YSEAARSAMIADYMYWLSGGSEQRISKLIKLYWQ  311 (569)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCchHhHHHHHHHHHH
Confidence            999999999998 778876655543   3344333333444444443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	197
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.92
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.91
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.91
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.91
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.91
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.89
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.89
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.87
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.86
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.86
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.86
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.86
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.85
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.84
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.83
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.83
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.83
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.83
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.83
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.83
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.82
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.82
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.82
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.82
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.82
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.82
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.82
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.82
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.81
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.81
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.81
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.81
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.81
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.81
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.8
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.8
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.8
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.8
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.8
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.8
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.79
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.79
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.79
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.79
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.79
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.79
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.78
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.78
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.78
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.78
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.78
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.77
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.77
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.77
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.77
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.77
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.77
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.77
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.76
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.76
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.76
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.76
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.76
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.76
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.76
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.76
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.75
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.75
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.75
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.74
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.74
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.74
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.74
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.74
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.74
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.74
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.74
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.73
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.73
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.73
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.73
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.72
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.72
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.72
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.72
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.71
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.71
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.71
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.71
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.7
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.7
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.7
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.7
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.69
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.69
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.69
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.69
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.68
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.67
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.67
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.67
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.67
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.67
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.67
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.66
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.66
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.66
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.66
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.66
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.65
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.65
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.65
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.65
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.65
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.65
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.64
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.64
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.64
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.64
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.64
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.63
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.63
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.62
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.61
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.6
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.6
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.6
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.59
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.59
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.59
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.59
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.59
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.59
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.59
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.58
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.58
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.58
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.57
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.56
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.56
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.55
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.55
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.54
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.54
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.54
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.53
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.53
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.53
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.53
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.52
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.51
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.51
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.5
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.5
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.5
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.49
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.49
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.49
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.49
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.47
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.47
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.47
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.46
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.44
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.43
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.43
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.42
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.42
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.4
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.4
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.4
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.39
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.38
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.37
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.36
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.34
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.33
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.33
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.31
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.3
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.29
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.28
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	99.28
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.26
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.26
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.25
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.2
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.19
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.19
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.17
1klx_A	138	Cysteine rich protein B; structural genomics, heli	99.17
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	99.14
1klx_A	138	Cysteine rich protein B; structural genomics, heli	99.14
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.13
1pc2_A	152	Mitochondria fission protein; unknown function; NM	99.12
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.1
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.04
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.99
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.97
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.95
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.91
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	98.9
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.88
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.86
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.83
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	98.79
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.75
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.74
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.72
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.71
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.69
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.68
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.64
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	98.56
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	98.52
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.51
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.5
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.49
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.43
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.31
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	97.94
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	97.92
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	97.89
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	97.88
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.86
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.79
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.79
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.78
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.73
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	97.33
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	97.25
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.24
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.18
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	96.68
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	96.38
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	96.33
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	95.72
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	95.6
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	95.45
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	94.72
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	94.16
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	93.64
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	93.16
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	92.86
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	92.48
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	92.21
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	91.89
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	91.06
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	89.62
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	88.27
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	87.31
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	87.3
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	82.24
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	80.23

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.92  E-value=4.5e-25  Score=170.63  Aligned_cols=155  Identities=13%  Similarity=-0.009  Sum_probs=130.5

Q ss_pred             CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCC
Q 029199            3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPG   82 (197)
Q Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~   82 (197)
                      |.++.+.|++.+|+..|..+++.+|+++..++..|..+...                    |++++|+..|+++++++|+
T Consensus        12 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~--------------------g~~~~A~~~~~~al~~~P~   71 (217)
T 2pl2_A           12 GVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKL--------------------GLVNPALENGKTLVARTPR   71 (217)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--------------------CCHHHHHHHHHHHHHhCCC
Confidence            66788899999999999999999999999999999998774                    7888888888888888888


Q ss_pred             CHHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 029199           83 NPLFLSNYAQFLYQSK-----------QDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASP  151 (197)
Q Consensus        83 ~~~~~~~la~~l~~~~-----------g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p  151 (197)
                      ++.+++++|.++.. .           |++++|+..|+++++++|+++.++.++|.++...|+ +++|+.+|+++++++ 
T Consensus        72 ~~~a~~~lg~~~~~-~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~-  148 (217)
T 2pl2_A           72 YLGGYMVLSEAYVA-LYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGE-RDKAEASLKQALALE-  148 (217)
T ss_dssp             CHHHHHHHHHHHHH-HHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHC-
T ss_pred             cHHHHHHHHHHHHH-hhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhcc-
Confidence            88888888877666 7           888888888888888888888888888888888774 788888888888888 


Q ss_pred             CCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          152 EDSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       152 ~~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      +++.+++++|.++..+|++++|+..|++.
T Consensus       149 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a  177 (217)
T 2pl2_A          149 DTPEIRSALAELYLSMGRLDEALAQYAKA  177 (217)
T ss_dssp             CCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            78888888888888888888887777774

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.91  E-value=2.4e-24  Score=160.92  Aligned_cols=156  Identities=13%  Similarity=0.006  Sum_probs=149.3

Q ss_pred             CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCC
Q 029199            3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPG   82 (197)
Q Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~   82 (197)
                      |.++.+.|++.+|+..|.++++.+|+++..++..|..+..                    .|++++|+..+++++..+|+
T Consensus        12 G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--------------------~~~~~~a~~~~~~~~~~~~~   71 (184)
T 3vtx_A           12 GDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMD--------------------IGLPNDAIESLKKFVVLDTT   71 (184)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--------------------CCCHHHHHHHHHHHHhcCch
Confidence            7788999999999999999999999999999999998877                    49999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 029199           83 NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAG  162 (197)
Q Consensus        83 ~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  162 (197)
                      ++.++..+|.++.. .+++++|+..++++++++|+++.++..+|.++..+|+ +++|+++|+++++++|+++.+|+++|.
T Consensus        72 ~~~~~~~~~~~~~~-~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~~l~~~p~~~~~~~~lg~  149 (184)
T 3vtx_A           72 SAEAYYILGSANFM-IDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGE-HDKAIEAYEKTISIKPGFIRAYQSIGL  149 (184)
T ss_dssp             CHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCC-chhHHHHHHHHHHhcchhhhHHHHHHH
Confidence            99999999977777 9999999999999999999999999999999999885 999999999999999999999999999


Q ss_pred             HHHHcCCccccccCCCcc
Q 029199          163 FLWETEEDNDECDAPSEL  180 (197)
Q Consensus       163 ~~~~~g~~~ea~~~~~~~  180 (197)
                      ++..+|++++|...|++.
T Consensus       150 ~~~~~g~~~~A~~~~~~a  167 (184)
T 3vtx_A          150 AYEGKGLRDEAVKYFKKA  167 (184)
T ss_dssp             HHHHTTCHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHH
Confidence            999999999999999884

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.91  E-value=4.7e-24  Score=156.13  Aligned_cols=145  Identities=15%  Similarity=0.090  Sum_probs=132.6

Q ss_pred             CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCC
Q 029199            3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPG   82 (197)
Q Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~   82 (197)
                      |+++...+++++||..|..+...+|.++..++..|..+..                    .|++++|+++|+++++++|+
T Consensus         4 G~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~--------------------~~~~~~A~~~~~~al~~~p~   63 (150)
T 4ga2_A            4 GSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYE--------------------AKEYDLAKKYICTYINVQER   63 (150)
T ss_dssp             ---CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHHhCCC
Confidence            8899999999999999999999999999999998888766                    49999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHhCCCCHHHHHHHH
Q 029199           83 NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATY-YERAVHASPEDSHVHASYA  161 (197)
Q Consensus        83 ~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~-~~~al~~~p~~~~~~~~la  161 (197)
                      ++.+|+++|.++.. .|++++|+.+|+++++++|+++.+++++|.++...++ +++|... ++++++++|+++.++..++
T Consensus        64 ~~~a~~~lg~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~-~~~aa~~~~~~al~l~P~~~~~~~l~~  141 (150)
T 4ga2_A           64 DPKAHRFLGLLYEL-EENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDV-TDGRAKYWVERAAKLFPGSPAVYKLKE  141 (150)
T ss_dssp             CHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCS-SSSHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH-cCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence            99999999988877 9999999999999999999999999999999999886 6666654 6999999999999999999


Q ss_pred             HHHHHcCC
Q 029199          162 GFLWETEE  169 (197)
Q Consensus       162 ~~~~~~g~  169 (197)
                      .++...|+
T Consensus       142 ~ll~~~G~  149 (150)
T 4ga2_A          142 QLLDCEGE  149 (150)
T ss_dssp             HHHHTCCC
T ss_pred             HHHHHhCc
Confidence            99999886

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.91  E-value=1.6e-24  Score=194.82  Aligned_cols=156  Identities=20%  Similarity=0.092  Sum_probs=149.5

Q ss_pred             CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCC
Q 029199            3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPG   82 (197)
Q Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~   82 (197)
                      |+++.+.|++.+|+..|.++++.+|+++..++..|..+..                    .|++++|+++|+++++++|+
T Consensus        16 G~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~--------------------~g~~~eA~~~~~~Al~l~P~   75 (723)
T 4gyw_A           16 ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ--------------------QGKLQEALMHYKEAIRISPT   75 (723)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHHhCCC
Confidence            7889999999999999999999999999999999999877                    49999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 029199           83 NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAG  162 (197)
Q Consensus        83 ~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  162 (197)
                      ++.+|+++|.++.. +|++++|+++|+++++++|+++.+++++|.++..+|+ +++|+++|+++++++|+++.++.++|.
T Consensus        76 ~~~a~~nLg~~l~~-~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~-~~eAi~~~~~Al~l~P~~~~a~~~L~~  153 (723)
T 4gyw_A           76 FADAYSNMGNTLKE-MQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGN-IPEAIASYRTALKLKPDFPDAYCNLAH  153 (723)
T ss_dssp             CHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCSCCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCChHHHhhhhh
Confidence            99999999988887 9999999999999999999999999999999999885 999999999999999999999999999


Q ss_pred             HHHHcCCccccccCCCcc
Q 029199          163 FLWETEEDNDECDAPSEL  180 (197)
Q Consensus       163 ~~~~~g~~~ea~~~~~~~  180 (197)
                      ++..+|++++|.+.++++
T Consensus       154 ~l~~~g~~~~A~~~~~ka  171 (723)
T 4gyw_A          154 CLQIVCDWTDYDERMKKL  171 (723)
T ss_dssp             HHHHTTCCTTHHHHHHHH
T ss_pred             HHHhcccHHHHHHHHHHH
Confidence            999999999998877764

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.91  E-value=2.8e-24  Score=166.11  Aligned_cols=166  Identities=17%  Similarity=0.076  Sum_probs=134.9

Q ss_pred             CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCC
Q 029199            3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPG   82 (197)
Q Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~   82 (197)
                      |.++...|++.+|+..|..+++.+|+++..++..|..+...+...         .......|++++|+..|+++++++|+
T Consensus        46 g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~---------~~~~~~~g~~~~A~~~~~~al~~~P~  116 (217)
T 2pl2_A           46 ARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQA---------EDRERGKGYLEQALSVLKDAERVNPR  116 (217)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTC---------SSHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhh---------hhhcccccCHHHHHHHHHHHHHhCcc
Confidence            667888999999999999999999999999999998876520000         00000018999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 029199           83 NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAG  162 (197)
Q Consensus        83 ~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  162 (197)
                      ++.+|.++|.++.. .|++++|+.+|+++++++ +++.+++++|.++...|+ +++|+.+|+++++++|+++.++.++|.
T Consensus       117 ~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~P~~~~~~~~la~  193 (217)
T 2pl2_A          117 YAPLHLQRGLVYAL-LGERDKAEASLKQALALE-DTPEIRSALAELYLSMGR-LDEALAQYAKALEQAPKDLDLRVRYAS  193 (217)
T ss_dssp             CHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHH-cCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence            99999999988887 999999999999999999 999999999999999885 999999999999999999999999999


Q ss_pred             HHHHcCCccccccCCCcc
Q 029199          163 FLWETEEDNDECDAPSEL  180 (197)
Q Consensus       163 ~~~~~g~~~ea~~~~~~~  180 (197)
                      ++..+|++++|...+++.
T Consensus       194 ~~~~~g~~~~A~~~~~~~  211 (217)
T 2pl2_A          194 ALLLKGKAEEAARAAALE  211 (217)
T ss_dssp             HHTC--------------
T ss_pred             HHHHccCHHHHHHHHHHH
Confidence            999999999999999875

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.89  E-value=7.2e-24  Score=177.83  Aligned_cols=155  Identities=11%  Similarity=0.079  Sum_probs=142.6

Q ss_pred             CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCC-HHHHHHHHHHHHHhCC
Q 029199            3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGD-SQGVEEYYKKMVEENP   81 (197)
Q Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~A~~~~~~al~~~P   81 (197)
                      |.++...+++.+|+..|..+++.+|+++..|+.+|..+...                    |+ +++|+++|+++++++|
T Consensus       104 g~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~--------------------g~d~~eAl~~~~~al~l~P  163 (382)
T 2h6f_A          104 RAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSL--------------------QKDLHEEMNYITAIIEEQP  163 (382)
T ss_dssp             HHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--------------------TCCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHc--------------------ccCHHHHHHHHHHHHHHCC
Confidence            55677788899999999999999999999999999998874                    75 9999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 029199           82 GNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYA  161 (197)
Q Consensus        82 ~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  161 (197)
                      ++..+|+++|.++.. +|++++|+.+|+++++++|+++.+|+++|.++..+|+ +++|+.+|+++++++|+++.+|+++|
T Consensus       164 ~~~~a~~~~g~~~~~-~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~-~~eAl~~~~~al~l~P~~~~a~~~lg  241 (382)
T 2h6f_A          164 KNYQVWHHRRVLVEW-LRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKL-WDNELQYVDQLLKEDVRNNSVWNQRY  241 (382)
T ss_dssp             TCHHHHHHHHHHHHH-HTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-CTTHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            999999999988777 9999999999999999999999999999999999996 89999999999999999999999999


Q ss_pred             HHHHH-cCCccccc-----cCCCc
Q 029199          162 GFLWE-TEEDNDEC-----DAPSE  179 (197)
Q Consensus       162 ~~~~~-~g~~~ea~-----~~~~~  179 (197)
                      .++.. .|..++|+     ..+++
T Consensus       242 ~~l~~l~~~~~eA~~~~el~~~~~  265 (382)
T 2h6f_A          242 FVISNTTGYNDRAVLEREVQYTLE  265 (382)
T ss_dssp             HHHHHTTCSCSHHHHHHHHHHHHH
T ss_pred             HHHHHhcCcchHHHHHHHHHHHHH
Confidence            99999 55557773     55555

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.89  E-value=3.1e-22  Score=142.54  Aligned_cols=120  Identities=18%  Similarity=0.155  Sum_probs=112.7

Q ss_pred             cccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHH
Q 029199           23 QERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLP  102 (197)
Q Consensus        23 ~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~  102 (197)
                      ...+|+.++.+..+|..+-.                    .|++++|+++|+++++++|+++.+|+++|.++.. +|+++
T Consensus         6 a~inP~~a~~~~~~G~~~~~--------------------~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-~~~~~   64 (126)
T 4gco_A            6 AYINPELAQEEKNKGNEYFK--------------------KGDYPTAMRHYNEAVKRDPENAILYSNRAACLTK-LMEFQ   64 (126)
T ss_dssp             -CCCHHHHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHH
T ss_pred             HHHCHHHHHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHh-hccHH
Confidence            34689999999999988776                    4999999999999999999999999999988887 99999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 029199          103 KAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFL  164 (197)
Q Consensus       103 ~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  164 (197)
                      +|+..|+++++++|+++.+++++|.++..+|+ +++|+++|+++++++|+++.++.+++.|+
T Consensus        65 ~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~-~~~A~~~~~~al~l~P~~~~a~~~l~~~l  125 (126)
T 4gco_A           65 RALDDCDTCIRLDSKFIKGYIRKAACLVAMRE-WSKAQRAYEDALQVDPSNEEAREGVRNCL  125 (126)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence            99999999999999999999999999999885 99999999999999999999999999875

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.87  E-value=1.5e-22  Score=148.16  Aligned_cols=121  Identities=15%  Similarity=0.118  Sum_probs=111.1

Q ss_pred             CcccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 029199           57 FYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQ  136 (197)
Q Consensus        57 ~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~  136 (197)
                      |..+...|++++|++.|++++..+|+++..++++|.+++. .|++++|+.+|+++++++|+++.+|+++|.++...|+ +
T Consensus         4 G~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~-~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~-~   81 (150)
T 4ga2_A            4 GSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYE-AKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN-T   81 (150)
T ss_dssp             ---CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-H
T ss_pred             HHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc-h
Confidence            4455667999999999999999999999999999988888 9999999999999999999999999999999999885 9


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCC-Cc
Q 029199          137 DRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAP-SE  179 (197)
Q Consensus       137 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~-~~  179 (197)
                      ++|+.+|+++++++|+++.+++++|.++.++|+++++...+ ++
T Consensus        82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~  125 (150)
T 4ga2_A           82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVER  125 (150)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            99999999999999999999999999999999999876654 55

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.86  E-value=5.9e-23  Score=172.29  Aligned_cols=158  Identities=12%  Similarity=0.089  Sum_probs=144.8

Q ss_pred             CCcchhHHHH-HHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhC
Q 029199            2 AGTALSEEVK-VMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEEN   80 (197)
Q Consensus         2 ~~~~~~~~~~-~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~   80 (197)
                      .|.+|...++ +.+|+..|..+++.+|+++.+|+.+|..+..+                    |++++|+.+|+++++++
T Consensus       137 ~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~--------------------g~~~eAl~~~~kal~ld  196 (382)
T 2h6f_A          137 RRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWL--------------------RDPSQELEFIADILNQD  196 (382)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH--------------------TCCTTHHHHHHHHHHHC
T ss_pred             HHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc--------------------cCHHHHHHHHHHHHHhC
Confidence            3678888997 99999999999999999999999999998885                    88999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH-----HHHHHHHHHhCCCCHH
Q 029199           81 PGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRA-----ATYYERAVHASPEDSH  155 (197)
Q Consensus        81 P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A-----~~~~~~al~~~p~~~~  155 (197)
                      |++..+|+++|.++.. +|++++|+.+|+++++++|+++.+|+++|.++..+++..++|     +++|+++++++|++..
T Consensus       197 P~~~~a~~~lg~~~~~-~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~  275 (382)
T 2h6f_A          197 AKNYHAWQHRQWVIQE-FKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNES  275 (382)
T ss_dssp             TTCHHHHHHHHHHHHH-HTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred             ccCHHHHHHHHHHHHH-cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHH
Confidence            9999999999988777 999999999999999999999999999999999955544777     5999999999999999


Q ss_pred             HHHHHHHHHHHcC--CccccccCCCcc
Q 029199          156 VHASYAGFLWETE--EDNDECDAPSEL  180 (197)
Q Consensus       156 ~~~~la~~~~~~g--~~~ea~~~~~~~  180 (197)
                      +|++++.++..+|  +++++.+.+.++
T Consensus       276 a~~~l~~ll~~~g~~~~~~a~~~~~~~  302 (382)
T 2h6f_A          276 AWNYLKGILQDRGLSKYPNLLNQLLDL  302 (382)
T ss_dssp             HHHHHHHHHTTTCGGGCHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCccchHHHHHHHHHh
Confidence            9999999999988  688887666654

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.86  E-value=3.4e-21  Score=141.72  Aligned_cols=127  Identities=10%  Similarity=0.063  Sum_probs=116.1

Q ss_pred             hhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHH
Q 029199            6 LSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPL   85 (197)
Q Consensus         6 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~   85 (197)
                      ...-.++..+-..|..+++.+|++++.++..|..+..                    .|++++|+.+|+++++++|+++.
T Consensus        12 ~~~l~~~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~--------------------~g~~~eA~~~~~~al~~~P~~~~   71 (151)
T 3gyz_A           12 STAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYN--------------------KGRIEEAEVFFRFLCIYDFYNVD   71 (151)
T ss_dssp             HHHHHHHHHTSCCTGGGCCSCHHHHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHHhCCCCHH
Confidence            3455667777788899999999999999999999877                    49999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 029199           86 FLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDS  154 (197)
Q Consensus        86 ~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~  154 (197)
                      +|+++|.++.. .|++++|+.+|+++++++|+++.+++++|.++..+|+ +++|+.+|++++++.|+.+
T Consensus        72 ~~~~lg~~~~~-~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~-~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A           72 YIMGLAAIYQI-KEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKA-PLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             HHHHHHHHHHH-TTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCCCHH
T ss_pred             HHHHHHHHHHH-HccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCHH
Confidence            99999988887 9999999999999999999999999999999999885 9999999999999999865

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.86  E-value=1.7e-22  Score=155.85  Aligned_cols=147  Identities=10%  Similarity=0.061  Sum_probs=136.4

Q ss_pred             CCcchhHHHHHHHHhhhcCcccccCC-CChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhC
Q 029199            2 AGTALSEEVKVMEALWNAGFEQERGT-VGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEEN   80 (197)
Q Consensus         2 ~~~~~~~~~~~~~a~~~~~~~~~~~p-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~   80 (197)
                      .|.++-..+++.+|+..|..+++.+| .++..++..|.....                    .|++++|+++|+++++++
T Consensus        13 ~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~A~~~~~~al~~~   72 (228)
T 4i17_A           13 EGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADN--------------------IKKYKEAADYFDIAIKKN   72 (228)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHH--------------------hhcHHHHHHHHHHHHHhC
Confidence            36778889999999999999999999 889999999988777                    499999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-
Q 029199           81 PGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDG-------EILSQYAKLVWELHNDQDRAATYYERAVHASPE-  152 (197)
Q Consensus        81 P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~-------~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~-  152 (197)
                      |+++.+|.++|.++.. +|++++|+.+|+++++++|+++       .++.++|.++...|+ +++|+++|+++++++|+ 
T Consensus        73 p~~~~~~~~l~~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~-~~~A~~~~~~al~~~p~~  150 (228)
T 4i17_A           73 YNLANAYIGKSAAYRD-MKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGN-IEKAEENYKHATDVTSKK  150 (228)
T ss_dssp             CSHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHTTSSCHH
T ss_pred             cchHHHHHHHHHHHHH-cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhcc-HHHHHHHHHHHHhcCCCc
Confidence            9999999999988887 9999999999999999999999       669999999999885 99999999999999999 


Q ss_pred             -CHHHHHHHHHHHHHcCCc
Q 029199          153 -DSHVHASYAGFLWETEED  170 (197)
Q Consensus       153 -~~~~~~~la~~~~~~g~~  170 (197)
                       ++.+++++|.++..+|+.
T Consensus       151 ~~~~~~~~l~~~~~~~~~~  169 (228)
T 4i17_A          151 WKTDALYSLGVLFYNNGAD  169 (228)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHH
Confidence             999999999999999988

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.86  E-value=1.3e-21  Score=175.90  Aligned_cols=135  Identities=19%  Similarity=0.169  Sum_probs=126.6

Q ss_pred             ccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHH
Q 029199           24 ERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPK  103 (197)
Q Consensus        24 ~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~  103 (197)
                      ...|++++.+...|..+..                    .|++++|+++|+++++++|+++.+|++||.++.. +|++++
T Consensus         3 gs~P~~a~al~nLG~~~~~--------------------~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~-~g~~~e   61 (723)
T 4gyw_A            3 GSCPTHADSLNNLANIKRE--------------------QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ-QGKLQE   61 (723)
T ss_dssp             ---CHHHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH-TTCHHH
T ss_pred             CCCCCcHHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHH
Confidence            3578899999999998877                    4999999999999999999999999999988887 999999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          104 AEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       104 A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      |+.+|+++++++|+++.+++++|.++..+|+ +++|+++|+++++++|+++.+|.++|.++.++|++++|+..|++.
T Consensus        62 A~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~-~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~A  137 (723)
T 4gyw_A           62 ALMHYKEAIRISPTFADAYSNMGNTLKEMQD-VQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTA  137 (723)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            9999999999999999999999999999885 999999999999999999999999999999999999999999884

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.85  E-value=1.7e-20  Score=137.97  Aligned_cols=156  Identities=13%  Similarity=0.085  Sum_probs=146.8

Q ss_pred             CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCC
Q 029199            3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPG   82 (197)
Q Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~   82 (197)
                      |.++...+++.+|+..|..+++..|.++..+...|..+..                    .|++++|+.+++++++.+|+
T Consensus        15 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~A~~~~~~~~~~~~~   74 (186)
T 3as5_A           15 GISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVK--------------------TGAVDRGTELLERSLADAPD   74 (186)
T ss_dssp             HHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHhcCCC
Confidence            5677788999999999999999999999999999988766                    49999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 029199           83 NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAG  162 (197)
Q Consensus        83 ~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  162 (197)
                      ++.++..+|.++.. .|++++|+.+|+++++.+|+++.++..+|.++...|+ +++|+.+++++++.+|+++.++..+|.
T Consensus        75 ~~~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~la~  152 (186)
T 3as5_A           75 NVKVATVLGLTYVQ-VQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGR-FDEAIDSFKIALGLRPNEGKVHRAIAF  152 (186)
T ss_dssp             CHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH-hcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCc-HHHHHHHHHHHHhcCccchHHHHHHHH
Confidence            99999999988877 9999999999999999999999999999999999885 999999999999999999999999999


Q ss_pred             HHHHcCCccccccCCCcc
Q 029199          163 FLWETEEDNDECDAPSEL  180 (197)
Q Consensus       163 ~~~~~g~~~ea~~~~~~~  180 (197)
                      ++..+|++++|...++++
T Consensus       153 ~~~~~~~~~~A~~~~~~~  170 (186)
T 3as5_A          153 SYEQMGRHEEALPHFKKA  170 (186)
T ss_dssp             HHHHTTCHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHH
Confidence            999999999999888875

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.84  E-value=3.8e-22  Score=153.13  Aligned_cols=157  Identities=11%  Similarity=0.043  Sum_probs=135.0

Q ss_pred             CCcchhHHHHHHHHhhhcCcccccCCCChhhHHh----------------hhcccCCCCCCCCCCCCCCCCCcccCCCCC
Q 029199            2 AGTALSEEVKVMEALWNAGFEQERGTVGQEMYLA----------------KGLGVGGRGGRGGGTGGGGSGFYPAGSGGD   65 (197)
Q Consensus         2 ~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~----------------~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~   65 (197)
                      +|.++-+.|++.+|+..|..+++.+|+++..++.                .|..+..                    .|+
T Consensus        10 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~--------------------~g~   69 (208)
T 3urz_A           10 KVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKK--------------------NRN   69 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHH--------------------TTC
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHH--------------------CCC
Confidence            3677888999999999999999999999999998                6666555                    499


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-CHHHHHHHHH
Q 029199           66 SQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHN-DQDRAATYYE  144 (197)
Q Consensus        66 ~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~-~~~~A~~~~~  144 (197)
                      +++|+..|+++++++|+++.+|+++|.++.. .|++++|+.+|+++++++|+++.+++++|.+++..+. +.+++...+.
T Consensus        70 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~  148 (208)
T 3urz_A           70 YDKAYLFYKELLQKAPNNVDCLEACAEMQVC-RGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYK  148 (208)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            9999999999999999999999999988887 9999999999999999999999999999999877653 2456778888


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          145 RAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       145 ~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      +++..+| ...+++++|.++..+|++++|+..|++.
T Consensus       149 ~~~~~~~-~~~a~~~~g~~~~~~~~~~~A~~~~~~a  183 (208)
T 3urz_A          149 KLSSPTK-MQYARYRDGLSKLFTTRYEKARNSLQKV  183 (208)
T ss_dssp             ---CCCH-HHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred             HHhCCCc-hhHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            8764333 2347889999999999999999999884

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.83  E-value=1.4e-20  Score=155.62  Aligned_cols=152  Identities=14%  Similarity=0.123  Sum_probs=76.8

Q ss_pred             hhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHH
Q 029199            6 LSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPL   85 (197)
Q Consensus         6 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~   85 (197)
                      +...|++.+|+..|..+++.+|+++..++..|..+..                    .|++++|+..|+++++++|+++.
T Consensus       179 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~--------------------~~~~~~A~~~~~~al~~~p~~~~  238 (388)
T 1w3b_A          179 FNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKE--------------------ARIFDRAVAAYLRALSLSPNHAV  238 (388)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT--------------------TTCTTHHHHHHHHHHHHCTTCHH
T ss_pred             HHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHhhCcCCHH
Confidence            3334444444444444444444444444444444433                    34555555555555555555555


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 029199           86 FLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLW  165 (197)
Q Consensus        86 ~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  165 (197)
                      ++.++|.++.. .|++++|+..|+++++++|+++.++.++|.++...|+ +++|+++|+++++++|+++.++.++|.++.
T Consensus       239 ~~~~l~~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  316 (388)
T 1w3b_A          239 VHGNLACVYYE-QGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGS-VAEAEDCYNTALRLCPTHADSLNNLANIKR  316 (388)
T ss_dssp             HHHHHHHHHHH-TTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCcccHHHHHHHHHHHH
Confidence            55555544444 5555555555555555555555555555555555442 555555555555555555555555555555


Q ss_pred             HcCCccccccCCCc
Q 029199          166 ETEEDNDECDAPSE  179 (197)
Q Consensus       166 ~~g~~~ea~~~~~~  179 (197)
                      ..|++++|...+++
T Consensus       317 ~~g~~~~A~~~~~~  330 (388)
T 1w3b_A          317 EQGNIEEAVRLYRK  330 (388)
T ss_dssp             TTTCHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHH
Confidence            55555555444444

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.83  E-value=4.6e-21  Score=157.03  Aligned_cols=176  Identities=11%  Similarity=0.067  Sum_probs=147.5

Q ss_pred             CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCC--------CCCCCC----------------CCCc
Q 029199            3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGG--------GTGGGG----------------SGFY   58 (197)
Q Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~--------~~~~~~----------------~~~~   58 (197)
                      |.++...|++.+|+..|..+++.+|+++..+...|..+...|.+..        ....|.                ..+.
T Consensus       106 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~  185 (365)
T 4eqf_A          106 GITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSK  185 (365)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC----------------
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHH
Confidence            5567777888888888888888888888888888877766665321        000111                1244


Q ss_pred             ccCCCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 029199           59 PAGSGGDSQGVEEYYKKMVEENPG--NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQ  136 (197)
Q Consensus        59 ~~~~~g~~~~A~~~~~~al~~~P~--~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~  136 (197)
                      .+...|++++|+++|+++++++|+  ++.+++++|.++.. .|++++|+.+|+++++++|+++.++.++|.++...|+ +
T Consensus       186 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~-~  263 (365)
T 4eqf_A          186 SPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHL-SGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDR-S  263 (365)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-H
T ss_pred             HHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-H
Confidence            566679999999999999999999  99999999988777 9999999999999999999999999999999999885 9


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          137 DRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       137 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      ++|+.+|+++++++|+++.++.++|.++..+|++++|...+++.
T Consensus       264 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  307 (365)
T 4eqf_A          264 EEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTA  307 (365)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999888885

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.83  E-value=4.6e-21  Score=171.29  Aligned_cols=150  Identities=11%  Similarity=-0.026  Sum_probs=138.3

Q ss_pred             HHHHHHHhhhcCccc--------ccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhC
Q 029199            9 EVKVMEALWNAGFEQ--------ERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEEN   80 (197)
Q Consensus         9 ~~~~~~a~~~~~~~~--------~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~   80 (197)
                      .+++.+|+..|..++        +.+|++++.++..|..+..                    .|++++|++.|+++++++
T Consensus       404 ~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~--------------------~g~~~~A~~~~~~al~~~  463 (681)
T 2pzi_A          404 LSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLD--------------------LGDVAKATRKLDDLAERV  463 (681)
T ss_dssp             TCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHH--------------------HTCHHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHh--------------------cCCHHHHHHHHHHHhccC
Confidence            456778888888887        8889999999998888766                    399999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 029199           81 PGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASY  160 (197)
Q Consensus        81 P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  160 (197)
                      |+++.+|+++|.++.. .|++++|+..|+++++++|+++.+++++|.++..+|+ +++ +++|+++++++|+++.+|+++
T Consensus       464 p~~~~a~~~lg~~~~~-~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~-~~~-~~~~~~al~~~P~~~~a~~~l  540 (681)
T 2pzi_A          464 GWRWRLVWYRAVAELL-TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGN-TDE-HKFYQTVWSTNDGVISAAFGL  540 (681)
T ss_dssp             CCCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTC-CCT-TCHHHHHHHHCTTCHHHHHHH
T ss_pred             cchHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC-hHH-HHHHHHHHHhCCchHHHHHHH
Confidence            9999999999988887 9999999999999999999999999999999999886 899 999999999999999999999


Q ss_pred             HHHHHHcCCccccccCCCccc
Q 029199          161 AGFLWETEEDNDECDAPSELD  181 (197)
Q Consensus       161 a~~~~~~g~~~ea~~~~~~~~  181 (197)
                      |.++..+|++++|+..|++..
T Consensus       541 g~~~~~~g~~~~A~~~~~~al  561 (681)
T 2pzi_A          541 ARARSAEGDRVGAVRTLDEVP  561 (681)
T ss_dssp             HHHHHHTTCHHHHHHHHHTSC
T ss_pred             HHHHHHcCCHHHHHHHHHhhc
Confidence            999999999999999999853

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.83  E-value=2.8e-21  Score=142.21  Aligned_cols=108  Identities=13%  Similarity=0.022  Sum_probs=102.4

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 029199           71 EYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHAS  150 (197)
Q Consensus        71 ~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~  150 (197)
                      ..|+++++++|+++.+++++|.+++. .|++++|+.+|+++++++|+++.+|+++|.++..+|+ +++|+.+|+++++++
T Consensus        23 ~~l~~al~l~p~~~~~~~~lg~~~~~-~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~-~~~Ai~~~~~al~l~  100 (151)
T 3gyz_A           23 ATLKDINAIPDDMMDDIYSYAYDFYN-KGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQ-FQQAADLYAVAFALG  100 (151)
T ss_dssp             CCTGGGCCSCHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHS
T ss_pred             CCHHHHhCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcc-HHHHHHHHHHHHhhC
Confidence            44677789999999999999988887 9999999999999999999999999999999999885 999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          151 PEDSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       151 p~~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      |+++.+|+++|.++..+|++++|...|++.
T Consensus       101 P~~~~~~~~lg~~~~~lg~~~eA~~~~~~a  130 (151)
T 3gyz_A          101 KNDYTPVFHTGQCQLRLKAPLKAKECFELV  130 (151)
T ss_dssp             SSCCHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            999999999999999999999999999885

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.83  E-value=8.7e-21  Score=156.79  Aligned_cols=152  Identities=18%  Similarity=0.080  Sum_probs=113.0

Q ss_pred             hHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHH
Q 029199            7 SEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLF   86 (197)
Q Consensus         7 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~   86 (197)
                      ...|++.+|+..|..+++.+|+++..+...|..+..                    .|++++|++.|+++++++|++..+
T Consensus       146 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~--------------------~g~~~~A~~~~~~al~~~p~~~~~  205 (388)
T 1w3b_A          146 KALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNA--------------------QGEIWLAIHHFEKAVTLDPNFLDA  205 (388)
T ss_dssp             HTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT--------------------TTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHhcCCCcHHH
Confidence            334444444444444444444444444444444433                    488888888888888888888888


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 029199           87 LSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWE  166 (197)
Q Consensus        87 ~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  166 (197)
                      +.++|.++.. .|++++|+..|+++++++|+++.++.++|.++...|+ +++|+++|+++++++|+++.++.++|.++.+
T Consensus       206 ~~~lg~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  283 (388)
T 1w3b_A          206 YINLGNVLKE-ARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGL-IDLAIDTYRRAIELQPHFPDAYCNLANALKE  283 (388)
T ss_dssp             HHHHHHHHHT-TTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHTCSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-cCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence            8888866665 8888888888888888888888888888888888774 8888888888888888888888888888888


Q ss_pred             cCCccccccCCCcc
Q 029199          167 TEEDNDECDAPSEL  180 (197)
Q Consensus       167 ~g~~~ea~~~~~~~  180 (197)
                      .|++++|...+++.
T Consensus       284 ~g~~~~A~~~~~~a  297 (388)
T 1w3b_A          284 KGSVAEAEDCYNTA  297 (388)
T ss_dssp             HSCHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHH
Confidence            88888888777764

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.83  E-value=5.7e-20  Score=141.52  Aligned_cols=176  Identities=11%  Similarity=-0.042  Sum_probs=89.1

Q ss_pred             CCcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCC--------CCCCCCCC------CcccCCCCCHH
Q 029199            2 AGTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGG--------GTGGGGSG------FYPAGSGGDSQ   67 (197)
Q Consensus         2 ~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~--------~~~~~~~~------~~~~~~~g~~~   67 (197)
                      .|.++-..+++.+|+..|..+++.+|.++..++..|..+...|.+..        ....|...      +..+...|+++
T Consensus        29 ~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~  108 (243)
T 2q7f_A           29 QMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYK  108 (243)
T ss_dssp             -------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHH
Confidence            46677778888888888888888888888888887777665422111        00011111      01112235555


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 029199           68 GVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAV  147 (197)
Q Consensus        68 ~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al  147 (197)
                      +|++.|+++++.+|+++.++..+|.++.. .|++++|+..|+++++++|+++.++..+|.++...|+ +++|+.+|++++
T Consensus       109 ~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~  186 (243)
T 2q7f_A          109 EAKDMFEKALRAGMENGDLFYMLGTVLVK-LEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGM-LDEALSQFAAVT  186 (243)
T ss_dssp             HHHHHHHHHHHHTCCSHHHHHHHHHHHHH-TSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCC-HHHHHHHHHHHH
Confidence            55555555555555555555555544444 5555555555555555555555555555555555443 455555555555


Q ss_pred             HhCCCCHHHHHHHHHHHHHcCCccccccCCCc
Q 029199          148 HASPEDSHVHASYAGFLWETEEDNDECDAPSE  179 (197)
Q Consensus       148 ~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~  179 (197)
                      +.+|+++.++..+|.++..+|++++|...+++
T Consensus       187 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  218 (243)
T 2q7f_A          187 EQDPGHADAFYNAGVTYAYKENREKALEMLDK  218 (243)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHH
T ss_pred             HhCcccHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            55555555555555555555555555555544

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.82  E-value=2.6e-21  Score=166.05  Aligned_cols=174  Identities=11%  Similarity=-0.106  Sum_probs=82.1

Q ss_pred             cchhHHHHH-HHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCC--------CCCCCCC-----CCcccCCC------
Q 029199            4 TALSEEVKV-MEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGG--------GTGGGGS-----GFYPAGSG------   63 (197)
Q Consensus         4 ~~~~~~~~~-~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~--------~~~~~~~-----~~~~~~~~------   63 (197)
                      .++...+++ .+|+..|..+++.+|+++..++..|..+...|.+..        ....|..     .+..+...      
T Consensus       110 ~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~lg~~~~~~~~~~~~  189 (474)
T 4abn_A          110 KALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGD  189 (474)
T ss_dssp             HHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCCSCHH
T ss_pred             HHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhccCChh
Confidence            344444555 666666666666666666666666655544322110        0011110     00011123      


Q ss_pred             ---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHH
Q 029199           64 ---GDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSK--------QDLPKAEEYYSRAILADP---GDGEILSQYAKLV  129 (197)
Q Consensus        64 ---g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~--------g~~~~A~~~~~~al~l~P---~~~~~~~~lg~~l  129 (197)
                         |++++|++.|+++++++|+++.+|+++|.++.. .        |++++|+.+|+++++++|   +++.+++++|.++
T Consensus       190 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~  268 (474)
T 4abn_A          190 EHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLS-LYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLH  268 (474)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHH
T ss_pred             hhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-HHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHH
Confidence               444555555555555555555555555544433 4        445555555555555555   4555555555554


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCc
Q 029199          130 WELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSE  179 (197)
Q Consensus       130 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~  179 (197)
                      ...|+ +++|+++|+++++++|+++.++.+++.++..+|++++|...+.+
T Consensus       269 ~~~g~-~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~  317 (474)
T 4abn_A          269 KYEES-YGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK  317 (474)
T ss_dssp             HHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            44442 45555555555555555555555555555555555554444444

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.82  E-value=2e-20  Score=160.54  Aligned_cols=141  Identities=15%  Similarity=-0.064  Sum_probs=119.3

Q ss_pred             CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCC---------CCCCC--------CCCCCCCCC------cc
Q 029199            3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGR---------GGRGG--------GTGGGGSGF------YP   59 (197)
Q Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~---------~~~~~--------~~~~~~~~~------~~   59 (197)
                      |.++-..+++.+|+..|..+++.+|+ +..+...|..+...         |.+..        ....|....      ..
T Consensus       144 g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~  222 (474)
T 4abn_A          144 GEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNA  222 (474)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            67788999999999999999999999 78999999888776         43222        122444332      23


Q ss_pred             cCCC--------CCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 029199           60 AGSG--------GDSQGVEEYYKKMVEENP---GNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKL  128 (197)
Q Consensus        60 ~~~~--------g~~~~A~~~~~~al~~~P---~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~  128 (197)
                      +...        |++++|+++|+++++++|   +++.+|+++|.++.. .|++++|+.+|+++++++|+++.++.+++.+
T Consensus       223 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~  301 (474)
T 4abn_A          223 YLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKY-EESYGEALEGFSQAAALDPAWPEPQQREQQL  301 (474)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            3334        889999999999999999   999999999988887 9999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHH
Q 029199          129 VWELHNDQDRAATYYERA  146 (197)
Q Consensus       129 l~~~~~~~~~A~~~~~~a  146 (197)
                      +..+++ +++|++.+.+.
T Consensus       302 ~~~lg~-~~eAi~~~~~~  318 (474)
T 4abn_A          302 LEFLSR-LTSLLESKGKT  318 (474)
T ss_dssp             HHHHHH-HHHHHHHTTTC
T ss_pred             HHHHHH-HHHHHHHhccc
Confidence            999996 89999887665

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.82  E-value=2.4e-20  Score=132.65  Aligned_cols=104  Identities=19%  Similarity=0.147  Sum_probs=97.7

Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 029199           75 KMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDS  154 (197)
Q Consensus        75 ~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~  154 (197)
                      ++..+||+.+.++.++|..++. .|++++|+.+|+++++++|+++.+++++|.++..+|+ +++|+..|+++++++|+++
T Consensus         4 r~a~inP~~a~~~~~~G~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~~~p~~~   81 (126)
T 4gco_A            4 RLAYINPELAQEEKNKGNEYFK-KGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLME-FQRALDDCDTCIRLDSKFI   81 (126)
T ss_dssp             ---CCCHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhcc-HHHHHHHHHHHHHhhhhhh
Confidence            4456899999999999999998 9999999999999999999999999999999999885 9999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCccccccCCCcc
Q 029199          155 HVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       155 ~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      .+|+++|.++..+|++++|...|++.
T Consensus        82 ~a~~~lg~~~~~~~~~~~A~~~~~~a  107 (126)
T 4gco_A           82 KGYIRKAACLVAMREWSKAQRAYEDA  107 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            99999999999999999999999984

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.82  E-value=1.5e-19  Score=134.74  Aligned_cols=131  Identities=15%  Similarity=0.133  Sum_probs=122.6

Q ss_pred             CChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q 029199           28 VGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEY  107 (197)
Q Consensus        28 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~  107 (197)
                      .++.+|+..|.....                    .|++++|+++|+++++++|+++.+|.++|.++.. .|++++|+..
T Consensus         3 e~~~iy~~lG~~~~~--------------------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~~a~~~   61 (184)
T 3vtx_A            3 ETTTIYMDIGDKKRT--------------------KGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMD-IGLPNDAIES   61 (184)
T ss_dssp             -CHHHHHHHHHHHHH--------------------HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHH
T ss_pred             cHHHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHH
Confidence            467888888888766                    4999999999999999999999999999988887 9999999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          108 YSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       108 ~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      +++++..+|+++.++..+|.++...+ ++++|.+.+.+++.++|+++.++..+|.++..+|++++|+..|++.
T Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~  133 (184)
T 3vtx_A           62 LKKFVVLDTTSAEAYYILGSANFMID-EKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKT  133 (184)
T ss_dssp             HHHHHHHCCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHhcCchhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHH
Confidence            99999999999999999999999977 5999999999999999999999999999999999999999999885

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.82  E-value=6.3e-20  Score=141.25  Aligned_cols=104  Identities=13%  Similarity=0.123  Sum_probs=65.3

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 029199           63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATY  142 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~  142 (197)
                      .|++++|++.|+++++.+|+++.++..+|.++.. .|++++|+..|+++++.+|+++.++..+|.++...|+ +++|+.+
T Consensus       138 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~  215 (243)
T 2q7f_A          138 LEQPKLALPYLQRAVELNENDTEARFQFGMCLAN-EGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKEN-REKALEM  215 (243)
T ss_dssp             TSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-TTHHHHH
T ss_pred             hccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccC-HHHHHHH
Confidence            3666666666666666666666666666655555 6666666666666666666666666666666666553 6666666


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcC
Q 029199          143 YERAVHASPEDSHVHASYAGFLWETE  168 (197)
Q Consensus       143 ~~~al~~~p~~~~~~~~la~~~~~~g  168 (197)
                      |+++++++|+++.++..++.+....|
T Consensus       216 ~~~~~~~~p~~~~~~~~~~~l~~~~~  241 (243)
T 2q7f_A          216 LDKAIDIQPDHMLALHAKKLLGHHHH  241 (243)
T ss_dssp             HHHHHHHCTTCHHHHHHHTC------
T ss_pred             HHHHHccCcchHHHHHHHHHHHhhcc
Confidence            66666666666666666665554433

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.82  E-value=3.6e-20  Score=135.24  Aligned_cols=125  Identities=9%  Similarity=-0.009  Sum_probs=106.7

Q ss_pred             hhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 029199           17 WNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQ   96 (197)
Q Consensus        17 ~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~   96 (197)
                      ..|..+++.+|.++..++..|..+..                    .|++++|+..|++++.++|+++.+|+++|.++..
T Consensus         8 ~~~~~al~~~p~~~~~~~~~g~~~~~--------------------~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~   67 (148)
T 2vgx_A            8 GTIAMLNEISSDTLEQLYSLAFNQYQ--------------------SGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQA   67 (148)
T ss_dssp             CSHHHHTTCCHHHHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHcCCHhhHHHHHHHHHHHHH--------------------cCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHH
Confidence            34555667789999999998888776                    4899999999999999999999999999977777


Q ss_pred             hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 029199           97 SKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGF  163 (197)
Q Consensus        97 ~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  163 (197)
                       .|++++|+.+|+++++++|+++.+++++|.++..+|+ +++|+.+|+++++++|+++........+
T Consensus        68 -~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~~~~~  132 (148)
T 2vgx_A           68 -MGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGE-LAEAESGLFLAQELIANXPEFXELSTRV  132 (148)
T ss_dssp             -TTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred             -HhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCC-HHHHHHHHHHHHHHCcCCCcchHHHHHH
Confidence             9999999999999999999999999999999999885 9999999999999998887664444333

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.82  E-value=5.6e-20  Score=150.57  Aligned_cols=156  Identities=15%  Similarity=0.120  Sum_probs=138.9

Q ss_pred             CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCC
Q 029199            3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPG   82 (197)
Q Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~   82 (197)
                      |.++-..|++.+|+..|..+++.+|.++..++..|..+...                    |++++|+++|+++++++|+
T Consensus        72 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~--------------------g~~~~A~~~~~~al~~~p~  131 (365)
T 4eqf_A           72 GLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAEN--------------------ENEQAAIVALQRCLELQPN  131 (365)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHC--------------------CCHHHHHHHHHHHHhcCCC
Confidence            56778889999999999999999999999999999988774                    8999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC--------------------------------------------C-
Q 029199           83 NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADP--------------------------------------------G-  117 (197)
Q Consensus        83 ~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P--------------------------------------------~-  117 (197)
                      ++.+|.++|.++.. .|++++|+.+|+++++++|                                            + 
T Consensus       132 ~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  210 (365)
T 4eqf_A          132 NLKALMALAVSYTN-TSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDM  210 (365)
T ss_dssp             CHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSS
T ss_pred             CHHHHHHHHHHHHc-cccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCc
Confidence            99999999977776 8888888777777776654                                            4 


Q ss_pred             -CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          118 -DGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       118 -~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                       ++.++.++|.++...|+ +++|+++|+++++++|+++.+|.++|.++..+|++++|...+++.
T Consensus       211 ~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  273 (365)
T 4eqf_A          211 IDPDLQTGLGVLFHLSGE-FNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRA  273 (365)
T ss_dssp             CCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence             88899999999999885 999999999999999999999999999999999999999888874

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.82  E-value=1.5e-19  Score=147.33  Aligned_cols=154  Identities=12%  Similarity=0.093  Sum_probs=143.4

Q ss_pred             CcchhHHHHHHHHhhhcCcccccCCC--ChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhC
Q 029199            3 GTALSEEVKVMEALWNAGFEQERGTV--GQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEEN   80 (197)
Q Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~   80 (197)
                      |..+ ..+++.+|+..|..+++.+|.  ++..+...|..+..                    .|++++|+.+|+++++++
T Consensus       189 ~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~--------------------~g~~~~A~~~~~~al~~~  247 (368)
T 1fch_A          189 GSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNL--------------------SGEYDKAVDCFTAALSVR  247 (368)
T ss_dssp             HHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHHC
T ss_pred             HHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHHhC
Confidence            4455 889999999999999999999  78999988888776                    499999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------
Q 029199           81 PGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPED-------  153 (197)
Q Consensus        81 P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~-------  153 (197)
                      |+++.+++++|.++.. .|++++|+.+|+++++++|+++.+++++|.++...|+ +++|+.+|+++++++|++       
T Consensus       248 ~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~  325 (368)
T 1fch_A          248 PNDYLLWNKLGATLAN-GNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGA-HREAVEHFLEALNMQRKSRGPRGEG  325 (368)
T ss_dssp             TTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHTC------C
T ss_pred             cCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCccccc
Confidence            9999999999988887 9999999999999999999999999999999999885 999999999999999998       


Q ss_pred             ----HHHHHHHHHHHHHcCCccccccCCCc
Q 029199          154 ----SHVHASYAGFLWETEEDNDECDAPSE  179 (197)
Q Consensus       154 ----~~~~~~la~~~~~~g~~~ea~~~~~~  179 (197)
                          +.+|.++|.++..+|++++|...+++
T Consensus       326 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  355 (368)
T 1fch_A          326 GAMSENIWSTLRLALSMLGQSDAYGAADAR  355 (368)
T ss_dssp             CCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred             cchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence                89999999999999999999777665

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.81  E-value=7e-21  Score=142.04  Aligned_cols=155  Identities=12%  Similarity=0.041  Sum_probs=137.1

Q ss_pred             CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCC
Q 029199            3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPG   82 (197)
Q Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~   82 (197)
                      |.++-..|++.+|+..|..+++.+|+++..++..|..+..                    .|++++|+..|+++++.+| 
T Consensus        13 a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~--------------------~g~~~~A~~~~~~a~~~~p-   71 (176)
T 2r5s_A           13 VSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLE--------------------TKQFELAQELLATIPLEYQ-   71 (176)
T ss_dssp             HHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHH--------------------TTCHHHHHHHHTTCCGGGC-
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH--------------------CCCHHHHHHHHHHhhhccC-
Confidence            4567788999999999999999999999999999998876                    4999999999999999999 


Q ss_pred             CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHH
Q 029199           83 NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPED--SHVHASY  160 (197)
Q Consensus        83 ~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l  160 (197)
                      ++.++..++.+.....++..+|+..|+++++++|+++.+++++|.++...|+ +++|+.+|+++++++|++  +.++.++
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~-~~~A~~~~~~~l~~~p~~~~~~a~~~l  150 (176)
T 2r5s_A           72 DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGR-DEEALELLWNILKVNLGAQDGEVKKTF  150 (176)
T ss_dssp             CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTTCTTTTTTHHHHHH
T ss_pred             ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc-HHHHHHHHHHHHHhCcccChHHHHHHH
Confidence            8887776664433323445568999999999999999999999999999885 999999999999999976  6699999


Q ss_pred             HHHHHHcCCccccccCCCc
Q 029199          161 AGFLWETEEDNDECDAPSE  179 (197)
Q Consensus       161 a~~~~~~g~~~ea~~~~~~  179 (197)
                      +.++..+|+.++|...|++
T Consensus       151 ~~~~~~~g~~~~A~~~y~~  169 (176)
T 2r5s_A          151 MDILSALGQGNAIASKYRR  169 (176)
T ss_dssp             HHHHHHHCSSCHHHHHHHH
T ss_pred             HHHHHHhCCCCcHHHHHHH
Confidence            9999999999999888776

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.81  E-value=2.6e-19  Score=137.91  Aligned_cols=133  Identities=9%  Similarity=0.034  Sum_probs=123.8

Q ss_pred             CCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCHHHH
Q 029199           26 GTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENP-GNPLFLSNYAQFLYQSKQDLPKA  104 (197)
Q Consensus        26 ~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~la~~l~~~~g~~~~A  104 (197)
                      .+.+|..++..|..+..                    .|++++|+..|+++++++| .+..+++++|.++.. .|++++|
T Consensus         3 ~~~~~~~~~~~g~~~~~--------------------~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~-~~~~~~A   61 (228)
T 4i17_A            3 QTTDPNQLKNEGNDALN--------------------AKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADN-IKKYKEA   61 (228)
T ss_dssp             -CCCHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHH-TTCHHHH
T ss_pred             cccCHHHHHHHHHHHHH--------------------ccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHH-hhcHHHH
Confidence            45678899999988776                    4999999999999999999 999999999988887 9999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHcCCccccccCC
Q 029199          105 EEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDS-------HVHASYAGFLWETEEDNDECDAP  177 (197)
Q Consensus       105 ~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~~~ea~~~~  177 (197)
                      +.+|+++++++|+++.++.++|.++..+|+ +++|+.+|+++++++|+++       .++.++|.++..+|++++|+..|
T Consensus        62 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~  140 (228)
T 4i17_A           62 ADYFDIAIKKNYNLANAYIGKSAAYRDMKN-NQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENY  140 (228)
T ss_dssp             HHHHHHHHHTTCSHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHhCcchHHHHHHHHHHHHHccc-HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHH
Confidence            999999999999999999999999999885 9999999999999999999       67999999999999999999999


Q ss_pred             Ccc
Q 029199          178 SEL  180 (197)
Q Consensus       178 ~~~  180 (197)
                      ++.
T Consensus       141 ~~a  143 (228)
T 4i17_A          141 KHA  143 (228)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            885

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.81  E-value=7.8e-20  Score=131.85  Aligned_cols=130  Identities=13%  Similarity=0.016  Sum_probs=112.4

Q ss_pred             hhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 029199           17 WNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQ   96 (197)
Q Consensus        17 ~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~   96 (197)
                      ..|..+++.+|+++..++..|..+..                    .|++++|+..|++++.++|+++.+|+++|.++..
T Consensus         5 ~~l~~al~~~p~~~~~~~~~a~~~~~--------------------~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~   64 (142)
T 2xcb_A            5 GTLAMLRGLSEDTLEQLYALGFNQYQ--------------------AGKWDDAQKIFQALCMLDHYDARYFLGLGACRQS   64 (142)
T ss_dssp             ----CCTTCCHHHHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHcCCHHHHHHHHHHHHHHHH--------------------HccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence            45677788899999999999988766                    4999999999999999999999999999988877


Q ss_pred             hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 029199           97 SKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETE  168 (197)
Q Consensus        97 ~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  168 (197)
                       .|++++|+.+|+++++++|+++.+++++|.++..+|+ +++|+.+|+++++++|+++........+...++
T Consensus        65 -~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~  134 (142)
T 2xcb_A           65 -LGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGD-LDGAESGFYSARALAAAQPAHEALAARAGAMLE  134 (142)
T ss_dssp             -TTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHH
T ss_pred             -HhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH
Confidence             9999999999999999999999999999999999885 999999999999999998877666655554443

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.81  E-value=7.6e-20  Score=138.83  Aligned_cols=156  Identities=12%  Similarity=0.044  Sum_probs=138.5

Q ss_pred             CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCC
Q 029199            3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPG   82 (197)
Q Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~   82 (197)
                      |.++-..|++.+|+..|..+++.+|.++..+...|..+..                    .|++++|+++|+++++.+|+
T Consensus        15 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~--------------------~~~~~~A~~~~~~a~~~~~~   74 (225)
T 2vq2_A           15 AMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQY--------------------LKVNDKAQESFRQALSIKPD   74 (225)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHH--------------------cCChHHHHHHHHHHHHhCCC
Confidence            5667788899999999999999999999999998888766                    38999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 029199           83 NPLFLSNYAQFLYQSK-QDLPKAEEYYSRAIL--ADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHAS  159 (197)
Q Consensus        83 ~~~~~~~la~~l~~~~-g~~~~A~~~~~~al~--l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  159 (197)
                      +..++..+|.++.. . |++++|+.+|+++++  .+|.++.++.++|.++...|+ +++|+.+|+++++.+|+++.++..
T Consensus        75 ~~~~~~~l~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~  152 (225)
T 2vq2_A           75 SAEINNNYGWFLCG-RLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQ-FGLAEAYLKRSLAAQPQFPPAFKE  152 (225)
T ss_dssp             CHHHHHHHHHHHHT-TTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred             ChHHHHHHHHHHHH-hcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCchHHHH
Confidence            99999999977776 8 999999999999998  677778999999999988774 899999999999999999999999


Q ss_pred             HHHHHHHcCCccccccCCCcc
Q 029199          160 YAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       160 la~~~~~~g~~~ea~~~~~~~  180 (197)
                      +|.++..+|++++|...++++
T Consensus       153 la~~~~~~~~~~~A~~~~~~~  173 (225)
T 2vq2_A          153 LARTKMLAGQLGDADYYFKKY  173 (225)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHH
Confidence            999999999999998887774

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.81  E-value=3.6e-20  Score=143.44  Aligned_cols=156  Identities=19%  Similarity=0.148  Sum_probs=141.9

Q ss_pred             CcchhHHHHHHHHhhhcCcccccCCCC-------hhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHH
Q 029199            3 GTALSEEVKVMEALWNAGFEQERGTVG-------QEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKK   75 (197)
Q Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~   75 (197)
                      |.++...+++.+|+..|..+++..|.+       +..++..|..+...                    |++++|+.+|++
T Consensus        45 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------------------~~~~~A~~~~~~  104 (258)
T 3uq3_A           45 AAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKL--------------------GDLKKTIEYYQK  104 (258)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT--------------------TCHHHHHHHHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHc--------------------ccHHHHHHHHHH
Confidence            567788899999999999999998877       68888888877663                    888888888888


Q ss_pred             HHH--------------------------hCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 029199           76 MVE--------------------------ENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLV  129 (197)
Q Consensus        76 al~--------------------------~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l  129 (197)
                      +++                          .+|+++.++..+|.++.. .|++++|+.+|+++++++|+++.++.++|.++
T Consensus       105 a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~  183 (258)
T 3uq3_A          105 SLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFT-KSDWPNAVKAYTEMIKRAPEDARGYSNRAAAL  183 (258)
T ss_dssp             HHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHH-hcCHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence            888                          778888999999988887 99999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          130 WELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       130 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      ...|+ +++|+.+|+++++.+|+++.++..+|.++..+|++++|...+++.
T Consensus       184 ~~~~~-~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  233 (258)
T 3uq3_A          184 AKLMS-FPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAA  233 (258)
T ss_dssp             HHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHhCC-HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            99884 999999999999999999999999999999999999999888874

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.81  E-value=3.5e-19  Score=142.38  Aligned_cols=156  Identities=13%  Similarity=0.054  Sum_probs=145.9

Q ss_pred             Cc-chhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCC
Q 029199            3 GT-ALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENP   81 (197)
Q Consensus         3 ~~-~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P   81 (197)
                      |. ++...+++.+|+..|..+++..|.++..+...|..+..                    .|++++|+++|+++++.+|
T Consensus       144 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~--------------------~~~~~~A~~~~~~~~~~~~  203 (327)
T 3cv0_A          144 EDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNL--------------------SNNYDSAAANLRRAVELRP  203 (327)
T ss_dssp             --CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHHCT
T ss_pred             HhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH--------------------hccHHHHHHHHHHHHHhCC
Confidence            44 68899999999999999999999999999999988776                    3999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------
Q 029199           82 GNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPE---------  152 (197)
Q Consensus        82 ~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~---------  152 (197)
                      +++.++..+|.++.. .|++++|+..|+++++++|+++.++.++|.++...|+ +++|+.+|+++++++|+         
T Consensus       204 ~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~a~~~~~~~~~~~~~~~  281 (327)
T 3cv0_A          204 DDAQLWNKLGATLAN-GNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQ-YDLAAKQLVRAIYMQVGGTTPTGEAS  281 (327)
T ss_dssp             TCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHTTSCC-----C
T ss_pred             CcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHhCCccccccccch
Confidence            999999999988887 9999999999999999999999999999999999885 99999999999999999         


Q ss_pred             ---CHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          153 ---DSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       153 ---~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                         ++.++..++.++..+|++++|...+++.
T Consensus       282 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  312 (327)
T 3cv0_A          282 REATRSMWDFFRMLLNVMNRPDLVELTYAQN  312 (327)
T ss_dssp             CTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred             hhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence               8999999999999999999998888874

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.80  E-value=3.1e-19  Score=136.81  Aligned_cols=130  Identities=14%  Similarity=0.171  Sum_probs=113.7

Q ss_pred             ChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHHHH----------------HHH
Q 029199           29 GQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSN----------------YAQ   92 (197)
Q Consensus        29 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~----------------la~   92 (197)
                      ++..++.+|..+..                    .|++++|+.+|+++++++|+++.+|+.                +|.
T Consensus         3 ~~~~~~~~g~~~~~--------------------~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~   62 (208)
T 3urz_A            3 SVDEMLQKVSAAIE--------------------AGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELAL   62 (208)
T ss_dssp             CHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH--------------------CCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHH
Confidence            45556777776655                    499999999999999999999999999                998


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcc-
Q 029199           93 FLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDN-  171 (197)
Q Consensus        93 ~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~-  171 (197)
                      ++.. .|++++|+.+|+++++++|+++.+++++|.++...|+ +++|+.+|+++++++|+++.+++++|.++...|+.+ 
T Consensus        63 ~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~  140 (208)
T 3urz_A           63 AYKK-NRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQ-EKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEK  140 (208)
T ss_dssp             HHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHH-CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHH
Confidence            8877 9999999999999999999999999999999999885 999999999999999999999999999998877544 


Q ss_pred             -ccccCCCcc
Q 029199          172 -DECDAPSEL  180 (197)
Q Consensus       172 -ea~~~~~~~  180 (197)
                       ++...+..+
T Consensus       141 ~~~~~~~~~~  150 (208)
T 3urz_A          141 KKLETDYKKL  150 (208)
T ss_dssp             HHHHHHHC--
T ss_pred             HHHHHHHHHH
Confidence             345555554

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.80  E-value=1e-18  Score=122.89  Aligned_cols=119  Identities=17%  Similarity=0.101  Sum_probs=108.3

Q ss_pred             CCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q 029199           27 TVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEE  106 (197)
Q Consensus        27 p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~  106 (197)
                      |.+++.++..|..+..                    .|++++|+..|+++++++|+++.+|+++|.++.. .|++++|+.
T Consensus         1 p~~a~~~~~~g~~~~~--------------------~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~-~~~~~~A~~   59 (126)
T 3upv_A            1 SMKAEEARLEGKEYFT--------------------KSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAK-LMSFPEAIA   59 (126)
T ss_dssp             CHHHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHH
T ss_pred             CchHHHHHHHHHHHHH--------------------hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-hcCHHHHHH
Confidence            3456677777777655                    4999999999999999999999999999988887 999999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHc
Q 029199          107 YYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHAS------PEDSHVHASYAGFLWET  167 (197)
Q Consensus       107 ~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~  167 (197)
                      +|+++++++|+++.+++++|.++..+|+ +++|+.+|+++++++      |+++.++..+..+..++
T Consensus        60 ~~~~al~~~p~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l  125 (126)
T 3upv_A           60 DCNKAIEKDPNFVRAYIRKATAQIAVKE-YASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR  125 (126)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999885 999999999999999      99999999999887654

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.80  E-value=2.7e-19  Score=144.43  Aligned_cols=172  Identities=10%  Similarity=-0.067  Sum_probs=125.6

Q ss_pred             hHHHHHHHHhhhcCccccc--CCCChhhHHhhhcccCCCCCCCCC---CCCCCCCC------cccCCCCCHHHHHHHHHH
Q 029199            7 SEEVKVMEALWNAGFEQER--GTVGQEMYLAKGLGVGGRGGRGGG---TGGGGSGF------YPAGSGGDSQGVEEYYKK   75 (197)
Q Consensus         7 ~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~------~~~~~~g~~~~A~~~~~~   75 (197)
                      ...++..+|+..|..+++.  +|+++..++..|..+...|.+.+.   -..|.+..      ..+...|++++|++.|++
T Consensus        76 ~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~  155 (291)
T 3mkr_A           76 ASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDSLECMAMTVQILLKLDRLDLARKELKK  155 (291)
T ss_dssp             HCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTTCCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             cCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            3344555566655554433  466666666666555544442210   00022111      123346999999999999


Q ss_pred             HHHhCCCCHHHHHHHH--HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 029199           76 MVEENPGNPLFLSNYA--QFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPED  153 (197)
Q Consensus        76 al~~~P~~~~~~~~la--~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~  153 (197)
                      +++.+|++.......+  .++.. .|++++|+.+|+++++.+|+++.+++++|.++..+|+ +++|+.+|+++++++|++
T Consensus       156 ~~~~~p~~~~~~l~~a~~~l~~~-~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~-~~eA~~~l~~al~~~p~~  233 (291)
T 3mkr_A          156 MQDQDEDATLTQLATAWVSLAAG-GEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGR-WEAAEGVLQEALDKDSGH  233 (291)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHC-TTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTC
T ss_pred             HHhhCcCcHHHHHHHHHHHHHhC-chHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCC
Confidence            9999999875544333  22233 5899999999999999999999999999999999885 999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCcccc-ccCCCcc
Q 029199          154 SHVHASYAGFLWETEEDNDE-CDAPSEL  180 (197)
Q Consensus       154 ~~~~~~la~~~~~~g~~~ea-~~~~~~~  180 (197)
                      +.++.++|.++..+|+.+++ ...++++
T Consensus       234 ~~~l~~l~~~~~~~g~~~eaa~~~~~~~  261 (291)
T 3mkr_A          234 PETLINLVVLSQHLGKPPEVTNRYLSQL  261 (291)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            99999999999999999875 4566653

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.80  E-value=1.3e-19  Score=145.08  Aligned_cols=175  Identities=12%  Similarity=0.079  Sum_probs=129.1

Q ss_pred             cchhHHH-HHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCC--------CCCCCCCC------CcccCCCCCHHH
Q 029199            4 TALSEEV-KVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGG--------GTGGGGSG------FYPAGSGGDSQG   68 (197)
Q Consensus         4 ~~~~~~~-~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~--------~~~~~~~~------~~~~~~~g~~~~   68 (197)
                      .++...+ ++.+|+..|..+++.+|.++..++..|..+...|.+..        ....|...      +..+...|++++
T Consensus        98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~  177 (330)
T 3hym_B           98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKL  177 (330)
T ss_dssp             HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHH
Confidence            3444444 55555555555555556555555555555444433211        00112111      112233589999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHHcCCHHHH
Q 029199           69 VEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILAD---------PGDGEILSQYAKLVWELHNDQDRA  139 (197)
Q Consensus        69 A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~---------P~~~~~~~~lg~~l~~~~~~~~~A  139 (197)
                      |++.|+++++.+|+++.++..+|.++.. .|++++|+.+|++++++.         |.++.++.++|.++...|+ +++|
T Consensus       178 A~~~~~~al~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A  255 (330)
T 3hym_B          178 AERFFSQALSIAPEDPFVMHEVGVVAFQ-NGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK-YAEA  255 (330)
T ss_dssp             HHHHHHHHHTTCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTC-HHHH
T ss_pred             HHHHHHHHHHhCCCChHHHHHHHHHHHH-cccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcC-HHHH
Confidence            9999999999999999999999977777 899999999999999886         7778899999999888774 8999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          140 ATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       140 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      +.+|+++++++|+++.++.++|.++..+|++++|...+++.
T Consensus       256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  296 (330)
T 3hym_B          256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTA  296 (330)
T ss_dssp             HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTT
T ss_pred             HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            99999999999999999999999999999999998888875

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.80  E-value=3.4e-19  Score=155.28  Aligned_cols=150  Identities=15%  Similarity=0.105  Sum_probs=124.3

Q ss_pred             HHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 029199            9 EVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLS   88 (197)
Q Consensus         9 ~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~   88 (197)
                      .+++.+|+..|..+++.+|+++..++..|..+..                    .|++++|++.|+++++++|+++.++.
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~--------------------~g~~~~A~~~~~~al~~~p~~~~~~~   61 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELG--------------------MGDTTAGEMAVQRGLALHPGHPEAVA   61 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHH--------------------HTCHHHHHHHHHHHHTTSTTCHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            3678999999999999999999999999988776                    39999999999999999999999999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-
Q 029199           89 NYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWET-  167 (197)
Q Consensus        89 ~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-  167 (197)
                      ++|.++.. .|++++|+.+|+++++++|+++.+++++|.++...|+ +++|+++|+++++++|+++.++.+++.++..+ 
T Consensus        62 ~lg~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  139 (568)
T 2vsy_A           62 RLGRVRWT-QQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQ-AEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLC  139 (568)
T ss_dssp             HHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHH-CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Confidence            99988887 9999999999999999999999999999999999885 99999999999999999999999999999999 


Q ss_pred             --CCccccccCCCcc
Q 029199          168 --EEDNDECDAPSEL  180 (197)
Q Consensus       168 --g~~~ea~~~~~~~  180 (197)
                        |++++|...+++.
T Consensus       140 ~~g~~~~A~~~~~~a  154 (568)
T 2vsy_A          140 DWRALDVLSAQVRAA  154 (568)
T ss_dssp             CCTTHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHH
Confidence              9999998887774

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.80  E-value=1.4e-19  Score=140.54  Aligned_cols=156  Identities=15%  Similarity=0.198  Sum_probs=125.4

Q ss_pred             CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCC
Q 029199            3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPG   82 (197)
Q Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~   82 (197)
                      |.++-..+++.+|+..|..+++.+|.++..++..|..+...                    |++++|++.|+++++.+|+
T Consensus        44 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~--------------------~~~~~A~~~~~~a~~~~~~  103 (252)
T 2ho1_A           44 GLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTE--------------------MEPKLADEEYRKALASDSR  103 (252)
T ss_dssp             HHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHc--------------------CCHHHHHHHHHHHHHHCcC
Confidence            44566677788888888888888888888888888776653                    7888888888888888888


Q ss_pred             CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 029199           83 NPLFLSNYAQFLYQSKQDLPKAEEYYSRAIL--ADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASY  160 (197)
Q Consensus        83 ~~~~~~~la~~l~~~~g~~~~A~~~~~~al~--l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  160 (197)
                      +..++..+|.++.. .|++++|+.+|+++++  .+|.++.++.++|.++...|+ +++|+.+|+++++.+|+++.++..+
T Consensus       104 ~~~~~~~la~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~l  181 (252)
T 2ho1_A          104 NARVLNNYGGFLYE-QKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKK-PAQAKEYFEKSLRLNRNQPSVALEM  181 (252)
T ss_dssp             CHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCSCCHHHHHHH
T ss_pred             cHHHHHHHHHHHHH-HhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCcccHHHHHHH
Confidence            88888888877666 8888888888888888  778888888888888888774 8888888888888888888888888


Q ss_pred             HHHHHHcCCccccccCCCcc
Q 029199          161 AGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       161 a~~~~~~g~~~ea~~~~~~~  180 (197)
                      |.++..+|++++|...++++
T Consensus       182 a~~~~~~g~~~~A~~~~~~~  201 (252)
T 2ho1_A          182 ADLLYKEREYVPARQYYDLF  201 (252)
T ss_dssp             HHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHH
Confidence            88888888888887766664

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.79  E-value=1.8e-19  Score=144.25  Aligned_cols=155  Identities=14%  Similarity=0.019  Sum_probs=128.9

Q ss_pred             cchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCC-CHHHHHHHHHHHHHhCCC
Q 029199            4 TALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGG-DSQGVEEYYKKMVEENPG   82 (197)
Q Consensus         4 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~A~~~~~~al~~~P~   82 (197)
                      .++-..+++.+|+..+..+++.+|.++..++..|..+..                    .| ++++|+++|+++++++|+
T Consensus        64 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~--------------------~~~~~~~A~~~~~~a~~~~~~  123 (330)
T 3hym_B           64 GTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLM--------------------VGHKNEHARRYLSKATTLEKT  123 (330)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHH--------------------SCSCHHHHHHHHHHHHTTCTT
T ss_pred             HHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH--------------------hhhhHHHHHHHHHHHHHhCCc
Confidence            344556667777777777777777777777777766555                    36 889999999999999999


Q ss_pred             CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 029199           83 NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAG  162 (197)
Q Consensus        83 ~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  162 (197)
                      ++.+|..+|.++.. .|++++|+..|+++++++|+++.++..+|.++...| ++++|+.+|+++++.+|+++.++..+|.
T Consensus       124 ~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~l~~  201 (330)
T 3hym_B          124 YGPAWIAYGHSFAV-ESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTN-NSKLAERFFSQALSIAPEDPFVMHEVGV  201 (330)
T ss_dssp             CTHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence            99999999977777 899999999999999999999999999999988877 4899999999999999999999999999


Q ss_pred             HHHHcCCccccccCCCcc
Q 029199          163 FLWETEEDNDECDAPSEL  180 (197)
Q Consensus       163 ~~~~~g~~~ea~~~~~~~  180 (197)
                      ++..+|++++|...+++.
T Consensus       202 ~~~~~~~~~~A~~~~~~a  219 (330)
T 3hym_B          202 VAFQNGEWKTAEKWFLDA  219 (330)
T ss_dssp             HHHHTTCHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHH
Confidence            999999999988777764

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.79  E-value=1.8e-19  Score=148.14  Aligned_cols=143  Identities=14%  Similarity=0.044  Sum_probs=131.9

Q ss_pred             HHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCC------
Q 029199           10 VKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGN------   83 (197)
Q Consensus        10 ~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~------   83 (197)
                      +.+.+|+..+....+.+|.++..+...|..+..                    .|++++|+.+|+++++++|++      
T Consensus       127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~--------------------~g~~~~A~~~y~~Al~~~p~~~~~~~~  186 (336)
T 1p5q_A          127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFK--------------------EGKYKQALLQYKKIVSWLEYESSFSNE  186 (336)
T ss_dssp             EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHH--------------------HTCHHHHHHHHHHHHHHTTTCCCCCSH
T ss_pred             eecccccchhcCCHHHHHHHHHHHHHHHHHHHH--------------------CCCHHHHHHHHHHHHHHhhccccCChH
Confidence            445567777778778888899999999988876                    499999999999999999999      


Q ss_pred             ---------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 029199           84 ---------PLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDS  154 (197)
Q Consensus        84 ---------~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~  154 (197)
                               ..+|+++|.++.. +|++++|+.+|+++++++|+++.+++++|.++..+++ +++|+.+|+++++++|+++
T Consensus       187 ~~~~~~~~~~~~~~nla~~~~~-~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~-~~~A~~~~~~al~l~P~~~  264 (336)
T 1p5q_A          187 EAQKAQALRLASHLNLAMCHLK-LQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVND-FELARADFQKVLQLYPNNK  264 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCSSCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHCCCCH
Confidence                     6999999988887 9999999999999999999999999999999999885 9999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCccccc
Q 029199          155 HVHASYAGFLWETEEDNDEC  174 (197)
Q Consensus       155 ~~~~~la~~~~~~g~~~ea~  174 (197)
                      .++.+++.++..+|+++++.
T Consensus       265 ~a~~~l~~~~~~~~~~~~a~  284 (336)
T 1p5q_A          265 AAKTQLAVCQQRIRRQLARE  284 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999883

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.79  E-value=8.8e-20  Score=133.15  Aligned_cols=109  Identities=13%  Similarity=-0.006  Sum_probs=103.7

Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 029199           70 EEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHA  149 (197)
Q Consensus        70 ~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~  149 (197)
                      -..|++++.++|++..+++++|.+++. .|++++|+..|+++++++|+++.+|+++|.++...|+ +++|+.+|++++++
T Consensus         7 ~~~~~~al~~~p~~~~~~~~~g~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~l   84 (148)
T 2vgx_A            7 GGTIAMLNEISSDTLEQLYSLAFNQYQ-SGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQ-YDLAIHSYSYGAVM   84 (148)
T ss_dssp             CCSHHHHTTCCHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH
T ss_pred             hhhHHHHHcCCHhhHHHHHHHHHHHHH-cCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhh-HHHHHHHHHHHHhc
Confidence            356889999999999999999988887 9999999999999999999999999999999999885 99999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          150 SPEDSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       150 ~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      +|+++.+++++|.++..+|++++|...|++.
T Consensus        85 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  115 (148)
T 2vgx_A           85 DIXEPRFPFHAAECLLQXGELAEAESGLFLA  115 (148)
T ss_dssp             STTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCCCchHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            9999999999999999999999999998875

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.79  E-value=4.5e-19  Score=134.30  Aligned_cols=156  Identities=12%  Similarity=0.013  Sum_probs=127.1

Q ss_pred             CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCC
Q 029199            3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPG   82 (197)
Q Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~   82 (197)
                      |......++++++...+.+..+..+..+..+...|..+..                    .|++++|+..|++++++.|+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--------------------~~~~~~A~~~~~~al~~~~~   70 (198)
T 2fbn_A           11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFK--------------------KNEINEAIVKYKEALDFFIH   70 (198)
T ss_dssp             -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHTTTT
T ss_pred             hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHHHHhc
Confidence            4566777888888888888777777778888888887765                    49999999999999999999


Q ss_pred             CH----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 029199           83 NP----------------LFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERA  146 (197)
Q Consensus        83 ~~----------------~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~a  146 (197)
                      ++                .++.++|.++.. .|++++|+.+|+++++++|+++.+++++|.++..+++ +++|+.+|+++
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~-~~~A~~~~~~a  148 (198)
T 2fbn_A           71 TEEWDDQILLDKKKNIEISCNLNLATCYNK-NKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGF-LEEAKENLYKA  148 (198)
T ss_dssp             CTTCCCHHHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHH
T ss_pred             ccccchhhHHHHHHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccc-HHHHHHHHHHH
Confidence            98                899999988887 9999999999999999999999999999999999885 99999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHHcCCccccc-cCCCcc
Q 029199          147 VHASPEDSHVHASYAGFLWETEEDNDEC-DAPSEL  180 (197)
Q Consensus       147 l~~~p~~~~~~~~la~~~~~~g~~~ea~-~~~~~~  180 (197)
                      ++++|+++.++..++.++..+++..++. ..+..+
T Consensus       149 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  183 (198)
T 2fbn_A          149 ASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGM  183 (198)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHHHHHHC---------
T ss_pred             HHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999998876 444443

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.79  E-value=1.9e-20  Score=167.23  Aligned_cols=144  Identities=13%  Similarity=0.005  Sum_probs=134.1

Q ss_pred             CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCC
Q 029199            3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPG   82 (197)
Q Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~   82 (197)
                      |.++-+.|++.+|+..|..+++.+|+++..++..|..+...                    |++++|++.|+++++++|+
T Consensus       440 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~--------------------g~~~~A~~~~~~al~l~P~  499 (681)
T 2pzi_A          440 VRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT--------------------GDYDSATKHFTEVLDTFPG  499 (681)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------------------TCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc--------------------CCHHHHHHHHHHHHHhCCC
Confidence            66788999999999999999999999999999999998774                    9999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 029199           83 NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAG  162 (197)
Q Consensus        83 ~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  162 (197)
                      ++.+|+++|.++.. .|++++ +.+|+++++++|+++.+++++|.++..+|+ +++|+++|+++++++|+++.+++++|.
T Consensus       500 ~~~~~~~lg~~~~~-~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~-~~~A~~~~~~al~l~P~~~~a~~~~~~  576 (681)
T 2pzi_A          500 ELAPKLALAATAEL-AGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGD-RVGAVRTLDEVPPTSRHFTTARLTSAV  576 (681)
T ss_dssp             CSHHHHHHHHHHHH-HTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHTSCTTSTTHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHH-cCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCC-HHHHHHHHHhhcccCcccHHHHHHHHH
Confidence            99999999988877 999999 999999999999999999999999999885 999999999999999999999999999


Q ss_pred             HHHHcCC
Q 029199          163 FLWETEE  169 (197)
Q Consensus       163 ~~~~~g~  169 (197)
                      ++...++
T Consensus       577 ~~~~~~~  583 (681)
T 2pzi_A          577 TLLSGRS  583 (681)
T ss_dssp             HTC----
T ss_pred             HHHccCC
Confidence            9988666

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.79  E-value=4.4e-18  Score=118.27  Aligned_cols=126  Identities=19%  Similarity=0.254  Sum_probs=115.8

Q ss_pred             ccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHH
Q 029199           24 ERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPK  103 (197)
Q Consensus        24 ~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~  103 (197)
                      +.+|.++..++..|.....                    .|++++|+..|+++++.+|+++.++..+|.++.. .|++++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~--------------------~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~   64 (131)
T 2vyi_A            6 EEDSAEAERLKTEGNEQMK--------------------VENFEAAVHFYGKAIELNPANAVYFCNRAAAYSK-LGNYAG   64 (131)
T ss_dssp             -CHHHHHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHH
T ss_pred             hcchhhhHHHHHHHHHHHH--------------------ccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-hhchHH
Confidence            4566778888888887765                    4999999999999999999999999999988877 999999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcc
Q 029199          104 AEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDN  171 (197)
Q Consensus       104 A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~  171 (197)
                      |+.+|+++++++|+++.+++.+|.++...++ +++|+.+|+++++++|+++.++..++.++..+|+++
T Consensus        65 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~  131 (131)
T 2vyi_A           65 AVQDCERAICIDPAYSKAYGRMGLALSSLNK-HVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP  131 (131)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHhcCccCHHHHHHHHHHHHHhCC-HHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence            9999999999999999999999999999884 999999999999999999999999999999999864

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.78  E-value=9.9e-19  Score=142.52  Aligned_cols=175  Identities=11%  Similarity=0.039  Sum_probs=89.7

Q ss_pred             CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCC--------CCCCCCCCC------cccCCCCCHHH
Q 029199            3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGG--------GTGGGGSGF------YPAGSGGDSQG   68 (197)
Q Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~--------~~~~~~~~~------~~~~~~g~~~~   68 (197)
                      |.++-..|++.+|+..|..+++.+|.++..++..|..+...|.+..        ....|....      ..+...|++++
T Consensus        71 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~  150 (368)
T 1fch_A           71 GLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQ  150 (368)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Confidence            4455666777777777777777777777777777766655422111        001111110      11122355555


Q ss_pred             HHHHHHHHHHhCCC---------------------------------------------------CHHHHHHHHHHHHHh
Q 029199           69 VEEYYKKMVEENPG---------------------------------------------------NPLFLSNYAQFLYQS   97 (197)
Q Consensus        69 A~~~~~~al~~~P~---------------------------------------------------~~~~~~~la~~l~~~   97 (197)
                      |++.|+++++++|+                                                   ++.++.++|.++.. 
T Consensus       151 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~-  229 (368)
T 1fch_A          151 ACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNL-  229 (368)
T ss_dssp             HHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHH-
Confidence            55555555544433                                                   33444444544443 


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCC
Q 029199           98 KQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAP  177 (197)
Q Consensus        98 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~  177 (197)
                      .|++++|+.+|+++++++|+++.++.++|.++...|+ +++|+.+|+++++++|+++.+++++|.++..+|++++|...+
T Consensus       230 ~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  308 (368)
T 1fch_A          230 SGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQ-SEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHF  308 (368)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            4555555555555555555555555555555555442 555555555555555555555555555555555555555444


Q ss_pred             Cc
Q 029199          178 SE  179 (197)
Q Consensus       178 ~~  179 (197)
                      ++
T Consensus       309 ~~  310 (368)
T 1fch_A          309 LE  310 (368)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.78  E-value=1.9e-19  Score=139.37  Aligned_cols=155  Identities=15%  Similarity=0.116  Sum_probs=143.9

Q ss_pred             CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCC
Q 029199            3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPG   82 (197)
Q Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~   82 (197)
                      |.++-..+++.+|+..|..+++.+ .++..++..|..+...                    |++++|+++|+++++++|+
T Consensus        12 g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~--------------------~~~~~A~~~~~~a~~~~~~   70 (258)
T 3uq3_A           12 GNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEK--------------------GEYETAISTLNDAVEQGRE   70 (258)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHc--------------------ccHHHHHHHHHHHHHhCcc
Confidence            667778899999999999999999 8999999999888774                    9999999999999999998


Q ss_pred             C-------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--------------------------hCCCCHHHHHHHHHHH
Q 029199           83 N-------PLFLSNYAQFLYQSKQDLPKAEEYYSRAIL--------------------------ADPGDGEILSQYAKLV  129 (197)
Q Consensus        83 ~-------~~~~~~la~~l~~~~g~~~~A~~~~~~al~--------------------------l~P~~~~~~~~lg~~l  129 (197)
                      +       +.++..+|.++.. .|++++|+.+|+++++                          .+|.++.++.++|.++
T Consensus        71 ~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  149 (258)
T 3uq3_A           71 MRADYKVISKSFARIGNAYHK-LGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEY  149 (258)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHHHHHHHH-cccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHH
Confidence            7       7999999988887 9999999999999999                          7788889999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          130 WELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       130 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      ...|+ +++|+.+|+++++.+|+++.++.++|.++..+|++++|...+++.
T Consensus       150 ~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  199 (258)
T 3uq3_A          150 FTKSD-WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKA  199 (258)
T ss_dssp             HHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHhcC-HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            99885 999999999999999999999999999999999999999888875

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.78  E-value=3.8e-19  Score=143.51  Aligned_cols=156  Identities=15%  Similarity=0.129  Sum_probs=115.7

Q ss_pred             CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCC
Q 029199            3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPG   82 (197)
Q Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~   82 (197)
                      |.++-..|++.+|+..|..+++.+|+++..++..|..+...                    |++++|+..|+++++++|+
T Consensus        10 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~--------------------~~~~~A~~~~~~~~~~~~~   69 (359)
T 3ieg_A           10 GKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAM--------------------GKSKAALPDLTKVIALKMD   69 (359)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH--------------------TCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHc--------------------cCHHHHHHHHHHHHHhCCC
Confidence            56677788889999999988888999998888888887664                    7777777777777777777


Q ss_pred             CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC---CCHHHHHHH------------HHHHHHHcCCHHHHHHHHHHHH
Q 029199           83 NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADP---GDGEILSQY------------AKLVWELHNDQDRAATYYERAV  147 (197)
Q Consensus        83 ~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P---~~~~~~~~l------------g~~l~~~~~~~~~A~~~~~~al  147 (197)
                      ++.++..+|.++.. .|++++|+..|+++++++|   +++.++..+            |.++...| ++++|+.+|++++
T Consensus        70 ~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~  147 (359)
T 3ieg_A           70 FTAARLQRGHLLLK-QGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGA-DYTAAITFLDKIL  147 (359)
T ss_dssp             CHHHHHHHHHHHHH-HTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHH-cCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHH
Confidence            77777777766665 7777777777777777777   677776666            45666655 3677777777777


Q ss_pred             HhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          148 HASPEDSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       148 ~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      +.+|+++.++..+|.++..+|++++|...++++
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  180 (359)
T 3ieg_A          148 EVCVWDAELRELRAECFIKEGEPRKAISDLKAA  180 (359)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            777777777777777777777777776666553

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.78  E-value=2.9e-18  Score=126.12  Aligned_cols=121  Identities=17%  Similarity=0.165  Sum_probs=108.9

Q ss_pred             ccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHH
Q 029199           24 ERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPK  103 (197)
Q Consensus        24 ~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~  103 (197)
                      +.++.++..++..|..+..                    .|++++|+++|+++++++|+++.+|+++|.+++. .|++++
T Consensus         5 ~~~~~~a~~~~~~g~~~~~--------------------~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~~   63 (164)
T 3sz7_A            5 MAPTPESDKLKSEGNAAMA--------------------RKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSA-SGQHEK   63 (164)
T ss_dssp             SSCCHHHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TTCHHH
T ss_pred             chhhhhHHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHH-ccCHHH
Confidence            3456678888888888766                    4999999999999999999999999999988887 999999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 029199          104 AEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWE  166 (197)
Q Consensus       104 A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  166 (197)
                      |+.+|+++++++|+++.+++++|.++..+|+ +++|+.+|+++++++|+++.+|++++....+
T Consensus        64 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~  125 (164)
T 3sz7_A           64 AAEDAELATVVDPKYSKAWSRLGLARFDMAD-YKGAKEAYEKGIEAEGNGGSDAMKRGLETTK  125 (164)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence            9999999999999999999999999999885 9999999999999999999977776666443

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.78  E-value=1.1e-18  Score=139.37  Aligned_cols=176  Identities=11%  Similarity=0.046  Sum_probs=150.1

Q ss_pred             CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCC--------CCCCCCCC------------------
Q 029199            3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGG--------GTGGGGSG------------------   56 (197)
Q Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~--------~~~~~~~~------------------   56 (197)
                      |.++...+++.+|+..|..+++.+|.++..+...|..+...|.+..        ....|...                  
T Consensus        62 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (327)
T 3cv0_A           62 GLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNV  141 (327)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC----------------
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHH
Confidence            5567777888888888888888888888888888887766655321        01112211                  


Q ss_pred             --Cc-ccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 029199           57 --FY-PAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELH  133 (197)
Q Consensus        57 --~~-~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~  133 (197)
                        +. .+...|++++|++.|+++++.+|+++.++..+|.++.. .|++++|+.+|+++++.+|+++.++.++|.++...|
T Consensus       142 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  220 (327)
T 3cv0_A          142 QSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNL-SNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGN  220 (327)
T ss_dssp             ----CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-hccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence              11 35567999999999999999999999999999988877 999999999999999999999999999999999988


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          134 NDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       134 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      + +++|+.+|+++++.+|+++.++..+|.++..+|++++|...++++
T Consensus       221 ~-~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  266 (327)
T 3cv0_A          221 R-PQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRA  266 (327)
T ss_dssp             C-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             C-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            5 999999999999999999999999999999999999999888875

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.77  E-value=4.2e-19  Score=137.42  Aligned_cols=157  Identities=10%  Similarity=0.012  Sum_probs=139.4

Q ss_pred             CcchhHHHHHHHHhhhcCcccccCCCCh---hhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHh
Q 029199            3 GTALSEEVKVMEALWNAGFEQERGTVGQ---EMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEE   79 (197)
Q Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~   79 (197)
                      |..+-+.|++.+|+..|..+++..|.++   ..++..|..+..                    .|++++|++.|+++++.
T Consensus        11 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~--------------------~~~~~~A~~~~~~~l~~   70 (225)
T 2yhc_A           11 AQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYK--------------------NADLPLAQAAIDRFIRL   70 (225)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHh--------------------cCCHHHHHHHHHHHHHH
Confidence            5677888999999999999999999875   678888888776                    49999999999999999


Q ss_pred             CCCCHH---HHHHHHHHHHH-----------------hcCCHHHHHHHHHHHHHhCCCCHHHH-----------------
Q 029199           80 NPGNPL---FLSNYAQFLYQ-----------------SKQDLPKAEEYYSRAILADPGDGEIL-----------------  122 (197)
Q Consensus        80 ~P~~~~---~~~~la~~l~~-----------------~~g~~~~A~~~~~~al~l~P~~~~~~-----------------  122 (197)
                      +|+++.   +++.+|.+++.                 ..|++++|+..|+++++.+|+++.++                 
T Consensus        71 ~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~  150 (225)
T 2yhc_A           71 NPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYE  150 (225)
T ss_dssp             CTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHH
T ss_pred             CcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHH
Confidence            999875   78889977664                 14789999999999999999998765                 


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCccccccCCCcc
Q 029199          123 SQYAKLVWELHNDQDRAATYYERAVHASPEDS---HVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       123 ~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      ..+|.+++..|+ +++|+..|+++++..|+++   .+++.+|.++.++|++++|++.++++
T Consensus       151 ~~~a~~~~~~~~-~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l  210 (225)
T 2yhc_A          151 YSVAEYYTERGA-WVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKII  210 (225)
T ss_dssp             HHHHHHHHHHTC-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCc-HHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence            578889999885 9999999999999999987   67999999999999999999888875

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.77  E-value=9.1e-19  Score=137.09  Aligned_cols=154  Identities=10%  Similarity=0.032  Sum_probs=136.7

Q ss_pred             CcchhHHHHHHHHhhhcCccccc----CCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHH
Q 029199            3 GTALSEEVKVMEALWNAGFEQER----GTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVE   78 (197)
Q Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~~----~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~   78 (197)
                      +.++...+++.+|+..|..+++.    .|.++..++..|..+..                    .|++++|+++|+++++
T Consensus        12 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------------------~~~~~~A~~~~~~al~   71 (275)
T 1xnf_A           12 AVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDS--------------------LGLRALARNDFSQALA   71 (275)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHH
T ss_pred             eeccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHH--------------------cccHHHHHHHHHHHHH
Confidence            45667789999999999999887    35677888888888766                    4999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 029199           79 ENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHA  158 (197)
Q Consensus        79 ~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~  158 (197)
                      ++|+++.+|.++|.++.. .|++++|+.+|+++++++|+++.++.++|.++...|+ +++|+.+|+++++++|+++....
T Consensus        72 ~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~a~~~~~~~~~~~~  149 (275)
T 1xnf_A           72 IRPDMPEVFNYLGIYLTQ-AGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGR-DKLAQDDLLAFYQDDPNDPFRSL  149 (275)
T ss_dssp             HCCCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             cCCCcHHHHHHHHHHHHH-ccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhcc-HHHHHHHHHHHHHhCCCChHHHH
Confidence            999999999999988887 9999999999999999999999999999999999885 99999999999999999997777


Q ss_pred             HHHHHHHHcCCccccccCCCc
Q 029199          159 SYAGFLWETEEDNDECDAPSE  179 (197)
Q Consensus       159 ~la~~~~~~g~~~ea~~~~~~  179 (197)
                      .++.+ ...|++++|...+++
T Consensus       150 ~~~~~-~~~~~~~~A~~~~~~  169 (275)
T 1xnf_A          150 WLYLA-EQKLDEKQAKEVLKQ  169 (275)
T ss_dssp             HHHHH-HHHHCHHHHHHHHHH
T ss_pred             HHHHH-HHhcCHHHHHHHHHH
Confidence            66655 566899998877754

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.77  E-value=6.9e-19  Score=136.65  Aligned_cols=156  Identities=10%  Similarity=0.056  Sum_probs=145.9

Q ss_pred             CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHH--hC
Q 029199            3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVE--EN   80 (197)
Q Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~   80 (197)
                      |.++...+++.+|+..|..+++.+|.++..++..|..+..                    .|++++|+++|+++++  .+
T Consensus        78 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~--------------------~g~~~~A~~~~~~~~~~~~~  137 (252)
T 2ho1_A           78 AVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYE--------------------QKRYEEAYQRLLEASQDTLY  137 (252)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHTTCTTC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHH--------------------HhHHHHHHHHHHHHHhCccC
Confidence            5567788999999999999999999999999999888766                    4999999999999999  89


Q ss_pred             CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 029199           81 PGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASY  160 (197)
Q Consensus        81 P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  160 (197)
                      |.++.++..+|.++.. .|++++|+.+|+++++.+|.++.++..+|.++...|+ +++|+.+|+++++..|+++.++..+
T Consensus       138 ~~~~~~~~~la~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~  215 (252)
T 2ho1_A          138 PERSRVFENLGLVSLQ-MKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKERE-YVPARQYYDLFAQGGGQNARSLLLG  215 (252)
T ss_dssp             TTHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTTSCCCHHHHHHH
T ss_pred             cccHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCcCcHHHHHHH
Confidence            9999999999988887 9999999999999999999999999999999999884 9999999999999999999999999


Q ss_pred             HHHHHHcCCccccccCCCcc
Q 029199          161 AGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       161 a~~~~~~g~~~ea~~~~~~~  180 (197)
                      +.++...|++++|...++++
T Consensus       216 ~~~~~~~g~~~~A~~~~~~~  235 (252)
T 2ho1_A          216 IRLAKVFEDRDTAASYGLQL  235 (252)
T ss_dssp             HHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHccCHHHHHHHHHHH
Confidence            99999999999998888875

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.77  E-value=6.8e-19  Score=137.98  Aligned_cols=175  Identities=10%  Similarity=0.037  Sum_probs=146.6

Q ss_pred             CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCC----------CCCCCCC-------CCcccCCCCC
Q 029199            3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGG----------GTGGGGS-------GFYPAGSGGD   65 (197)
Q Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~----------~~~~~~~-------~~~~~~~~g~   65 (197)
                      |..+-..+++.+|+..|..+++.+|.++..++..|..+...|.+..          ....+..       .+..+...|+
T Consensus        10 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~   89 (272)
T 3u4t_A           10 ADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQ   89 (272)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHccc
Confidence            4566778889999999999999999999999998888776665322          1111221       1223455699


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHHHcCCHHHHHHHHH
Q 029199           66 SQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYA-KLVWELHNDQDRAATYYE  144 (197)
Q Consensus        66 ~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg-~~l~~~~~~~~~A~~~~~  144 (197)
                      +++|+++|+++++++|+++.++.++|.++.. .|++++|+.+|+++++++|+++.+++++| .++.. + ++++|+.+|+
T Consensus        90 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~-~-~~~~A~~~~~  166 (272)
T 3u4t_A           90 DSLAIQQYQAAVDRDTTRLDMYGQIGSYFYN-KGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYN-K-EYVKADSSFV  166 (272)
T ss_dssp             HHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH-TTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHT-T-CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcccHHHHHHHHHHHHH-ccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHH-H-HHHHHHHHHH
Confidence            9999999999999999999999999988887 99999999999999999999999999999 55444 6 5999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCC---ccccccCCCcc
Q 029199          145 RAVHASPEDSHVHASYAGFLWETEE---DNDECDAPSEL  180 (197)
Q Consensus       145 ~al~~~p~~~~~~~~la~~~~~~g~---~~ea~~~~~~~  180 (197)
                      ++++++|+++.+++.+|.++..+|+   +++|...+++.
T Consensus       167 ~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a  205 (272)
T 3u4t_A          167 KVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKL  205 (272)
T ss_dssp             HHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHH
T ss_pred             HHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHH
Confidence            9999999999999999999999998   88887777764

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.77  E-value=3e-19  Score=140.56  Aligned_cols=156  Identities=15%  Similarity=0.039  Sum_probs=133.8

Q ss_pred             CcchhHHHHHHHHhhhcCcccccCCCC---hhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHh
Q 029199            3 GTALSEEVKVMEALWNAGFEQERGTVG---QEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEE   79 (197)
Q Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~   79 (197)
                      |.++-+.|++.+|+..|..+++..|++   +..++..|..+..                    .|++++|+..|++++++
T Consensus        22 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~--------------------~~~~~~A~~~~~~~l~~   81 (261)
T 3qky_A           22 AMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQ--------------------NKEYLLAASEYERFIQI   81 (261)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHH--------------------hCcHHHHHHHHHHHHHH
Confidence            566777889999999999999999998   8888888888776                    48999999999999999


Q ss_pred             CCCC---HHHHHHHHHHHHHh--------cCCHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHH
Q 029199           80 NPGN---PLFLSNYAQFLYQS--------KQDLPKAEEYYSRAILADPGDGEIL-----------------SQYAKLVWE  131 (197)
Q Consensus        80 ~P~~---~~~~~~la~~l~~~--------~g~~~~A~~~~~~al~l~P~~~~~~-----------------~~lg~~l~~  131 (197)
                      +|++   +.+++.+|.+++ .        .|++++|+..|+++++.+|+++.+.                 +++|.++..
T Consensus        82 ~p~~~~~~~a~~~lg~~~~-~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~  160 (261)
T 3qky_A           82 YQIDPRVPQAEYERAMCYY-KLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYER  160 (261)
T ss_dssp             CTTCTTHHHHHHHHHHHHH-HHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCchhHHHHHHHHHHHH-HhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8854   668889995554 4        7899999999999999999987776                 888999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHc----------CCccccccCCCcc
Q 029199          132 LHNDQDRAATYYERAVHASPE---DSHVHASYAGFLWET----------EEDNDECDAPSEL  180 (197)
Q Consensus       132 ~~~~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~----------g~~~ea~~~~~~~  180 (197)
                      .|+ +++|+.+|+++++..|+   .+.+++.+|.++..+          |++++|...++++
T Consensus       161 ~g~-~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~  221 (261)
T 3qky_A          161 REL-YEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERL  221 (261)
T ss_dssp             TTC-HHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHH
T ss_pred             ccC-HHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHH
Confidence            774 99999999999999988   567899999999977          8888888888775

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.77  E-value=2.6e-18  Score=138.58  Aligned_cols=175  Identities=10%  Similarity=-0.007  Sum_probs=129.9

Q ss_pred             cchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCC--------CCCCCCCCCc------ccCCCCCHHHH
Q 029199            4 TALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGG--------GTGGGGSGFY------PAGSGGDSQGV   69 (197)
Q Consensus         4 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~--------~~~~~~~~~~------~~~~~g~~~~A   69 (197)
                      .++...+++.+|+..|..+++..|.++..+...|..+...|.+..        ....|.....      .+...|++++|
T Consensus       128 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  207 (359)
T 3ieg_A          128 LDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELS  207 (359)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence            334444555555555555555555555555555544444333211        0112222111      12224999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHH------------HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHHc
Q 029199           70 EEYYKKMVEENPGNPLFLSNY------------AQFLYQSKQDLPKAEEYYSRAILADPGDGEI----LSQYAKLVWELH  133 (197)
Q Consensus        70 ~~~~~~al~~~P~~~~~~~~l------------a~~l~~~~g~~~~A~~~~~~al~l~P~~~~~----~~~lg~~l~~~~  133 (197)
                      ++.|+++++.+|++..++..+            |.++.. .|++++|+..|+++++.+|+++..    +..+|.++...|
T Consensus       208 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~  286 (359)
T 3ieg_A          208 LSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIR-DGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDE  286 (359)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHcc
Confidence            999999999999999977644            766777 999999999999999999999854    667899999988


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          134 NDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       134 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      + +++|+.+|+++++.+|+++.+++.+|.++..+|++++|...+++.
T Consensus       287 ~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a  332 (359)
T 3ieg_A          287 K-PVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAA  332 (359)
T ss_dssp             C-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             C-HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            5 999999999999999999999999999999999999999998885

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.77  E-value=2.1e-18  Score=144.39  Aligned_cols=156  Identities=13%  Similarity=0.130  Sum_probs=125.6

Q ss_pred             CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCC
Q 029199            3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPG   82 (197)
Q Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~   82 (197)
                      |.++-..|++.+|+..|..+++.+|.++..++..|..+...                    |++++|+..|+++++++|+
T Consensus        33 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~--------------------g~~~~A~~~~~~al~~~p~   92 (450)
T 2y4t_A           33 GKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAM--------------------GKSKAALPDLTKVIQLKMD   92 (450)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHC--------------------CCHHHHHHHHHHHHhcCCC
Confidence            45667788899999999999988999999999988887664                    7888888888888888888


Q ss_pred             CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH---HHHHHH------------HHHHHHHcCCHHHHHHHHHHHH
Q 029199           83 NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDG---EILSQY------------AKLVWELHNDQDRAATYYERAV  147 (197)
Q Consensus        83 ~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~---~~~~~l------------g~~l~~~~~~~~~A~~~~~~al  147 (197)
                      ++.++..+|.++.. .|++++|+..|+++++++|+++   .++..+            |.++...|+ +++|+.+|++++
T Consensus        93 ~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~  170 (450)
T 2y4t_A           93 FTAARLQRGHLLLK-QGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGD-YTAAIAFLDKIL  170 (450)
T ss_dssp             CHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHH
Confidence            88888888877766 8888888888888888888877   666555            555777664 788888888888


Q ss_pred             HhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          148 HASPEDSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       148 ~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      +.+|+++.++..+|.++...|++++|...++++
T Consensus       171 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  203 (450)
T 2y4t_A          171 EVCVWDAELRELRAECFIKEGEPRKAISDLKAA  203 (450)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHH
T ss_pred             HhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            888888888888888888888888887777764

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.76  E-value=2.4e-18  Score=139.11  Aligned_cols=157  Identities=13%  Similarity=0.088  Sum_probs=135.5

Q ss_pred             CcchhHHHHHHHHhhhcCcccc-cCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCC
Q 029199            3 GTALSEEVKVMEALWNAGFEQE-RGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENP   81 (197)
Q Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~-~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P   81 (197)
                      |......+++.+|+..|..+++ ..|+++.+|+..|..+..                    .|++++|.+.|+++++++|
T Consensus        71 g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~--------------------~~~~~~A~~~~~~al~~~p  130 (308)
T 2ond_A           71 GDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES--------------------RMKYEKVHSIYNRLLAIED  130 (308)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHTSSS
T ss_pred             cchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh--------------------cCCHHHHHHHHHHHHhccc
Confidence            3334445667999999999999 699999999999988766                    3899999999999999999


Q ss_pred             CCHH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 029199           82 GNPL-FLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASY  160 (197)
Q Consensus        82 ~~~~-~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  160 (197)
                      +++. +|.++|.++.. .|++++|+..|+++++.+|.+..++...+.+.+...+++++|+.+|+++++.+|+++.+|.++
T Consensus       131 ~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  209 (308)
T 2ond_A          131 IDPTLVYIQYMKFARR-AEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAY  209 (308)
T ss_dssp             SCTHHHHHHHHHHHHH-HHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cCccHHHHHHHHHHHH-hcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence            9987 89999987776 899999999999999999999888887776654433359999999999999999999999999


Q ss_pred             HHHHHHcCCccccccCCCcc
Q 029199          161 AGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       161 a~~~~~~g~~~ea~~~~~~~  180 (197)
                      +.++..+|++++|...|++.
T Consensus       210 ~~~~~~~g~~~~A~~~~~~a  229 (308)
T 2ond_A          210 IDYLSHLNEDNNTRVLFERV  229 (308)
T ss_dssp             HHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHH
Confidence            99999999999998888875

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.76  E-value=3e-19  Score=139.99  Aligned_cols=115  Identities=10%  Similarity=0.121  Sum_probs=95.7

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHHcCCHHH
Q 029199           63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGE----ILSQYAKLVWELHNDQDR  138 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~----~~~~lg~~l~~~~~~~~~  138 (197)
                      .|++++|+..|+++++.+|+++.++..+|.+++. .|++++|+..|+++++ .|.++.    ++.++|.++...|+ +++
T Consensus        16 ~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~-~~~   92 (272)
T 3u4t_A           16 NNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYE-LAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQ-DSL   92 (272)
T ss_dssp             TTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHH-TTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTC-HHH
T ss_pred             hcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-HhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHccc-HHH
Confidence            4888888888888888888888888888877776 8888888888888888 554444    48888888888774 888


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          139 AATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       139 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      |+++|+++++++|+++.++.++|.++..+|++++|...+++.
T Consensus        93 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  134 (272)
T 3u4t_A           93 AIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQ  134 (272)
T ss_dssp             HHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGG
T ss_pred             HHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            888888888888888888888888888888888888877774

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.76  E-value=2.1e-19  Score=144.47  Aligned_cols=113  Identities=10%  Similarity=0.050  Sum_probs=63.1

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH----------------------------------H
Q 029199           64 GDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYY----------------------------------S  109 (197)
Q Consensus        64 g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~----------------------------------~  109 (197)
                      |++++|+..|+++++++|+++.+++++|.++.. .|++++|+..|                                  +
T Consensus       131 g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~-~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~  209 (287)
T 3qou_A          131 SNYTDALPLLXDAWQLSNQNGEIGLLLAETLIA-LNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQ  209 (287)
T ss_dssp             TCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH-TTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHH-CCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHH
Confidence            556666666666666666666666666655444 55555555554                                  4


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCccccccCCC
Q 029199          110 RAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPED--SHVHASYAGFLWETEEDNDECDAPS  178 (197)
Q Consensus       110 ~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~ea~~~~~  178 (197)
                      ++++++|+++.+++++|.++...|+ +++|+..|+++++.+|++  +.++.+++.++..+|+.+++...|+
T Consensus       210 ~al~~~P~~~~~~~~la~~l~~~g~-~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r  279 (287)
T 3qou_A          210 QQVAENPEDAALATQLALQLHQVGR-NEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYR  279 (287)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHhcCCccHHHHHHHHHHHHHccc-HHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHH
Confidence            5555555555555555555555443 555555555555555555  5555555555555555555544444

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.76  E-value=2.8e-18  Score=130.13  Aligned_cols=156  Identities=12%  Similarity=0.004  Sum_probs=143.9

Q ss_pred             CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCC-CCHHHHHHHHHHHHH--h
Q 029199            3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSG-GDSQGVEEYYKKMVE--E   79 (197)
Q Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~A~~~~~~al~--~   79 (197)
                      |.++...+++.+|+..|..+++.+|.++..+...|..+..                    . |++++|+..|+++++  .
T Consensus        49 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~--------------------~~~~~~~A~~~~~~~~~~~~  108 (225)
T 2vq2_A           49 AEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCG--------------------RLNRPAESMAYFDKALADPT  108 (225)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT--------------------TTCCHHHHHHHHHHHHTSTT
T ss_pred             HHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH--------------------hcCcHHHHHHHHHHHHcCcC
Confidence            5667788999999999999999999999999998887765                    6 899999999999999  7


Q ss_pred             CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHH
Q 029199           80 NPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASP-EDSHVHA  158 (197)
Q Consensus        80 ~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p-~~~~~~~  158 (197)
                      +|.+..++.++|.++.. .|++++|+.+|+++++.+|+++.++..+|.++...|+ +++|+.+++++++.+| +++..+.
T Consensus       109 ~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~  186 (225)
T 2vq2_A          109 YPTPYIANLNKGICSAK-QGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQ-LGDADYYFKKYQSRVEVLQADDLL  186 (225)
T ss_dssp             CSCHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHCSCCHHHHH
T ss_pred             CcchHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCCHHHHH
Confidence            77789999999988877 9999999999999999999999999999999999885 9999999999999999 9999999


Q ss_pred             HHHHHHHHcCCccccccCCCcc
Q 029199          159 SYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       159 ~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      .++.++...|+.+++...++.+
T Consensus       187 ~~~~~~~~~~~~~~a~~~~~~~  208 (225)
T 2vq2_A          187 LGWKIAKALGNAQAAYEYEAQL  208 (225)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHhcCcHHHHHHHHHHH
Confidence            9999999999999998777765

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.76  E-value=9.2e-19  Score=126.18  Aligned_cols=108  Identities=9%  Similarity=-0.033  Sum_probs=100.0

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 029199           71 EYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHAS  150 (197)
Q Consensus        71 ~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~  150 (197)
                      ..|+++++++|++..+++.+|..++. .|++++|+..|++++.++|+++.+|+++|.++...|+ +++|+.+|+++++++
T Consensus         5 ~~l~~al~~~p~~~~~~~~~a~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~   82 (142)
T 2xcb_A            5 GTLAMLRGLSEDTLEQLYALGFNQYQ-AGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGL-YEQALQSYSYGALMD   82 (142)
T ss_dssp             ----CCTTCCHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHC
T ss_pred             hhHHHHHcCCHHHHHHHHHHHHHHHH-HccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhh-HHHHHHHHHHHHhcC
Confidence            57888899999999999999988887 9999999999999999999999999999999999885 999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          151 PEDSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       151 p~~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      |+++.+++++|.++..+|++++|...|++.
T Consensus        83 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  112 (142)
T 2xcb_A           83 INEPRFPFHAAECHLQLGDLDGAESGFYSA  112 (142)
T ss_dssp             TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            999999999999999999999999998885

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.76  E-value=2.2e-18  Score=149.26  Aligned_cols=175  Identities=14%  Similarity=0.075  Sum_probs=128.3

Q ss_pred             cchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCC--------CCCCCCCCC------cccCCCCCHHHH
Q 029199            4 TALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGG--------GTGGGGSGF------YPAGSGGDSQGV   69 (197)
Q Consensus         4 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~--------~~~~~~~~~------~~~~~~g~~~~A   69 (197)
                      .++.+.|++.+|+..|..+++.+|.++..|...|..+...|...+        ....|....      ..+...|++++|
T Consensus       381 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  460 (597)
T 2xpi_A          381 IYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLA  460 (597)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHH
Confidence            344555555555555555555555555555555555444433211        011121111      122224899999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh------CCCC-HHHHHHHHHHHHHHcCCHHHHHHH
Q 029199           70 EEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILA------DPGD-GEILSQYAKLVWELHNDQDRAATY  142 (197)
Q Consensus        70 ~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l------~P~~-~~~~~~lg~~l~~~~~~~~~A~~~  142 (197)
                      ++.|+++++.+|+++.+|..+|.++.. .|++++|++.|++++++      +|++ +.++..+|.++...|+ +++|++.
T Consensus       461 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~-~~~A~~~  538 (597)
T 2xpi_A          461 NEYLQSSYALFQYDPLLLNELGVVAFN-KSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKM-YDAAIDA  538 (597)
T ss_dssp             HHHHHHHHHHCCCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTC-HHHHHHH
T ss_pred             HHHHHHHHHhCCCChHHHHHHHHHHHH-hCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcC-HHHHHHH
Confidence            999999999999999999999977777 89999999999999988      6665 7889999999988774 8999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          143 YERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       143 ~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      |+++++++|+++.+|..++.++...|++++|...++++
T Consensus       539 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  576 (597)
T 2xpi_A          539 LNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHES  576 (597)
T ss_dssp             HHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            99999999999999999999999999999998888875

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.76  E-value=1.5e-18  Score=145.35  Aligned_cols=176  Identities=10%  Similarity=-0.019  Sum_probs=142.8

Q ss_pred             CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCC--------CCCCCCC------CcccCCCCCHHH
Q 029199            3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGG--------TGGGGSG------FYPAGSGGDSQG   68 (197)
Q Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~--------~~~~~~~------~~~~~~~g~~~~   68 (197)
                      |.++.+.+++.+|+..|..+++..|.++..++..|..+..+|.+...        ...|...      +..+...|++++
T Consensus       150 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  229 (450)
T 2y4t_A          150 ALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHEL  229 (450)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence            44566667777777777777777777777777777666666554331        1122221      123344699999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHH------------HHHHHHhcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHH
Q 029199           69 VEEYYKKMVEENPGNPLFLSNY------------AQFLYQSKQDLPKAEEYYSRAILADPGDGE----ILSQYAKLVWEL  132 (197)
Q Consensus        69 A~~~~~~al~~~P~~~~~~~~l------------a~~l~~~~g~~~~A~~~~~~al~l~P~~~~----~~~~lg~~l~~~  132 (197)
                      |++.|+++++++|++...+..+            |.++.. .|++++|+.+|+++++++|+++.    ++.++|.++...
T Consensus       230 A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~  308 (450)
T 2y4t_A          230 SLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIR-DGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKD  308 (450)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHC
Confidence            9999999999999999998777            877777 99999999999999999999965    788999999998


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          133 HNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       133 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      |+ +++|+.+|+++++++|+++.+|..+|.++..+|++++|...++++
T Consensus       309 g~-~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  355 (450)
T 2y4t_A          309 EK-PVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETA  355 (450)
T ss_dssp             TC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CC-HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            85 999999999999999999999999999999999999999888885

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.76  E-value=9.3e-18  Score=117.44  Aligned_cols=123  Identities=15%  Similarity=0.125  Sum_probs=111.7

Q ss_pred             cCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHH
Q 029199           25 RGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKA  104 (197)
Q Consensus        25 ~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A  104 (197)
                      ..|.++..++..|..+..                    .|++++|+++|+++++.+|++..+++++|.++.. .|++++|
T Consensus        11 ~~~~~~~~~~~~~~~~~~--------------------~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~~~~~~A   69 (133)
T 2lni_A           11 MNPDLALMVKNKGNECFQ--------------------KGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTK-LLEFQLA   69 (133)
T ss_dssp             SSSCHHHHHHHHHHHHHH--------------------TTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTT-TTCHHHH
T ss_pred             cCcccHHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-hccHHHH
Confidence            455666777777776655                    4999999999999999999999999999977776 9999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 029199          105 EEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEE  169 (197)
Q Consensus       105 ~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  169 (197)
                      +.+|+++++++|+++.+++++|.++...++ +++|+.+|+++++.+|++..++..++.++..+|+
T Consensus        70 ~~~~~~a~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           70 LKDCEECIQLEPTFIKGYTRKAAALEAMKD-YTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHhCCCchHHHHHHHHHHHHHhh-HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999885 9999999999999999999999999999998874

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.75  E-value=3.2e-18  Score=146.10  Aligned_cols=155  Identities=16%  Similarity=0.165  Sum_probs=143.9

Q ss_pred             CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCC
Q 029199            3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPG   82 (197)
Q Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~   82 (197)
                      |.++...+++.+|+..|..+++.+|. +..++..|..+..                    .|++++|++.|+++++.+|+
T Consensus       250 g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~--------------------~~~~~~A~~~~~~~~~~~~~  308 (537)
T 3fp2_A          250 GIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLAD--------------------KENSQEFFKFFQKAVDLNPE  308 (537)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCC--------------------SSCCHHHHHHHHHHHHHCTT
T ss_pred             HHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHH--------------------hcCHHHHHHHHHHHhccCCC
Confidence            44556667789999999999999999 8899988888766                    49999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 029199           83 NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAG  162 (197)
Q Consensus        83 ~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  162 (197)
                      ++.++..+|.++.. .|++++|+..|+++++++|+++.++.++|.++...|+ +++|+.+|+++++.+|+++.++..+|.
T Consensus       309 ~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~l~~  386 (537)
T 3fp2_A          309 YPPTYYHRGQMYFI-LQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGK-FTESEAFFNETKLKFPTLPEVPTFFAE  386 (537)
T ss_dssp             CHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCTHHHHHHHH
T ss_pred             CHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence            99999999988887 9999999999999999999999999999999999885 999999999999999999999999999


Q ss_pred             HHHHcCCccccccCCCcc
Q 029199          163 FLWETEEDNDECDAPSEL  180 (197)
Q Consensus       163 ~~~~~g~~~ea~~~~~~~  180 (197)
                      ++...|++++|...++++
T Consensus       387 ~~~~~g~~~~A~~~~~~a  404 (537)
T 3fp2_A          387 ILTDRGDFDTAIKQYDIA  404 (537)
T ss_dssp             HHHHTTCHHHHHHHHHHH
T ss_pred             HHHHhCCHHHHHHHHHHH
Confidence            999999999999888875

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.75  E-value=5e-18  Score=147.05  Aligned_cols=116  Identities=11%  Similarity=0.017  Sum_probs=109.6

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 029199           63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATY  142 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~  142 (197)
                      .|++++|++.|+++++++|++..+|+.++.++.. .|++++|++.|+++++.+|+++.++..+|.++...|+ +++|+++
T Consensus       386 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~  463 (597)
T 2xpi_A          386 VNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAI-EGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGN-ILLANEY  463 (597)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTC-HHHHHHH
T ss_pred             hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCC-HHHHHHH
Confidence            5999999999999999999999999999988777 9999999999999999999999999999999999885 9999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          143 YERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       143 ~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      |+++++.+|+++.+|..++.++.+.|++++|...|+++
T Consensus       464 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  501 (597)
T 2xpi_A          464 LQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNA  501 (597)
T ss_dssp             HHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999888886

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.75  E-value=5.3e-18  Score=125.78  Aligned_cols=116  Identities=9%  Similarity=0.133  Sum_probs=87.2

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHHcCCH--HHH
Q 029199           63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKL-VWELHNDQ--DRA  139 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~-l~~~~~~~--~~A  139 (197)
                      .|++++|+..|+++++.+|+++.+|+.+|.++.. .|++++|+.+|+++++++|+++.++.++|.+ +...+ ++  ++|
T Consensus        23 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~-~~~~~~A  100 (177)
T 2e2e_A           23 QQNPEAQLQALQDKIRANPQNSEQWALLGEYYLW-QNDYSNSLLAYRQALQLRGENAELYAALATVLYYQAS-QHMTAQT  100 (177)
T ss_dssp             ----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTT-TCCCHHH
T ss_pred             ccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcC-CcchHHH
Confidence            4777778888888888888888888888866666 7888888888888888888888888888877 55555 46  788


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          140 ATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       140 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      +.+|+++++.+|+++.+++++|.++..+|++++|...++++
T Consensus       101 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  141 (177)
T 2e2e_A          101 RAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKV  141 (177)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence            88888888888888888888888888888888877777664

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.74  E-value=6.1e-18  Score=125.43  Aligned_cols=101  Identities=12%  Similarity=0.083  Sum_probs=90.3

Q ss_pred             ccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 029199           59 PAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDL--PKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQ  136 (197)
Q Consensus        59 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~--~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~  136 (197)
                      .+...|++++|+.+|+++++++|+++.++.++|.+++...|++  ++|+.+|+++++++|+++.+++++|.++...|+ +
T Consensus        53 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~  131 (177)
T 2e2e_A           53 YYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQAN-Y  131 (177)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-H
T ss_pred             HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccc-H
Confidence            4455799999999999999999999999999998834338998  999999999999999999999999999999885 9


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHH
Q 029199          137 DRAATYYERAVHASPEDSHVHASY  160 (197)
Q Consensus       137 ~~A~~~~~~al~~~p~~~~~~~~l  160 (197)
                      ++|+.+|+++++++|+++.....+
T Consensus       132 ~~A~~~~~~al~~~p~~~~~~~~~  155 (177)
T 2e2e_A          132 AQAIELWQKVMDLNSPRINRTQLV  155 (177)
T ss_dssp             HHHHHHHHHHHHTCCTTSCHHHHH
T ss_pred             HHHHHHHHHHHhhCCCCccHHHHH
Confidence            999999999999999987654433

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.74  E-value=3.7e-18  Score=137.70  Aligned_cols=110  Identities=15%  Similarity=0.148  Sum_probs=96.6

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 029199           63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATY  142 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~  142 (197)
                      .|++++|+..|+++++.+|+++.+|+++|.++.. .|++++|+..|+++++++|+++.++.++|.++...|+..+.+.++
T Consensus       179 ~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~-~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~  257 (291)
T 3mkr_A          179 GEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMA-QGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRY  257 (291)
T ss_dssp             TTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHH
Confidence            4899999999999999999999999999977777 999999999999999999999999999999999999744457899


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCC
Q 029199          143 YERAVHASPEDSHVHASYAGFLWETEEDNDECDAP  177 (197)
Q Consensus       143 ~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~  177 (197)
                      ++++++++|+++.+..    +..+.+.+++++..|
T Consensus       258 ~~~~~~~~P~~~~~~d----~~~~~~~fd~~~~~~  288 (291)
T 3mkr_A          258 LSQLKDAHRSHPFIKE----YRAKENDFDRLVLQY  288 (291)
T ss_dssp             HHHHHHHCTTCHHHHH----HHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCChHHHH----HHHHHHHHHHHHHHc
Confidence            9999999999998753    455666666665444

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.74  E-value=1.9e-18  Score=147.70  Aligned_cols=142  Identities=15%  Similarity=0.098  Sum_probs=125.9

Q ss_pred             HHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCC-------
Q 029199           11 KVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGN-------   83 (197)
Q Consensus        11 ~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~-------   83 (197)
                      ++.+|+..|.+..+..|..+..+...|..+..                    .|++++|+.+|+++++++|++       
T Consensus       249 ~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~--------------------~g~~~~A~~~y~~Al~~~p~~~~~~~~~  308 (457)
T 1kt0_A          249 SFEKAKESWEMDTKEKLEQAAIVKEKGTVYFK--------------------GGKYMQAVIQYGKIVSWLEMEYGLSEKE  308 (457)
T ss_dssp             EEECCCCGGGSCHHHHHHHHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHHHTTCCSCCHHH
T ss_pred             hcccCcchhhcCHHHHHHHHHHHHHHHHHHHh--------------------CCCHHHHHHHHHHHHHHhcccccCChHH
Confidence            34566777777777788888899999988776                    499999999999999999999       


Q ss_pred             --------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 029199           84 --------PLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSH  155 (197)
Q Consensus        84 --------~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~  155 (197)
                              ..+|+++|.+++. +|++++|+.+|+++++++|+++.+++++|.++..+++ +++|+.+|+++++++|++..
T Consensus       309 ~~~~~~~~~~~~~nla~~~~~-~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~-~~~A~~~~~~al~l~P~~~~  386 (457)
T 1kt0_A          309 SKASESFLLAAFLNLAMCYLK-LREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNE-FESAKGDFEKVLEVNPQNKA  386 (457)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTTC----C
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCCCHH
Confidence                    7999999988887 9999999999999999999999999999999999885 99999999999999999999


Q ss_pred             HHHHHHHHHHHcCCccccc
Q 029199          156 VHASYAGFLWETEEDNDEC  174 (197)
Q Consensus       156 ~~~~la~~~~~~g~~~ea~  174 (197)
                      ++.+++.++..+|+++++.
T Consensus       387 a~~~l~~~~~~~~~~~~a~  405 (457)
T 1kt0_A          387 ARLQISMCQKKAKEHNERD  405 (457)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998874

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.74  E-value=1.8e-17  Score=117.29  Aligned_cols=127  Identities=14%  Similarity=0.082  Sum_probs=110.5

Q ss_pred             ccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHH
Q 029199           24 ERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPK  103 (197)
Q Consensus        24 ~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~  103 (197)
                      ..+|.++..++..|..+..                    .|++++|+.+|+++++++|+++.+|+++|.++.. .|++++
T Consensus         3 ~~~~~~~~~~~~~g~~~~~--------------------~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~~~~~~   61 (137)
T 3q49_B            3 HMKSPSAQELKEQGNRLFV--------------------GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK-MQQPEQ   61 (137)
T ss_dssp             ---CCCHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHH
T ss_pred             CCccccHHHHHHHHHHHHH--------------------hCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHH-hcCHHH
Confidence            3467788888888888766                    4999999999999999999999999999988887 999999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCccc
Q 029199          104 AEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPE-----DSHVHASYAGFLWETEEDND  172 (197)
Q Consensus       104 A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~g~~~e  172 (197)
                      |+.+|+++++++|+++.+++++|.++...|+ +++|+.+|+++++++|+     +..++..+..+..+.+...+
T Consensus        62 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~e  134 (137)
T 3q49_B           62 ALADCRRALELDGQSVKAHFFLGQCQLEMES-YDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIE  134 (137)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCchhHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999885 99999999999999998     78888888887766554433

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.74  E-value=1.9e-17  Score=116.74  Aligned_cols=91  Identities=12%  Similarity=0.046  Sum_probs=80.7

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 029199           63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATY  142 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~  142 (197)
                      .|++++|+..|+++++++|+++.+|+.+|.++.. .|++++|+.+|+++++++|+++.+++++|.++...|+ +++|+.+
T Consensus        30 ~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~-~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~-~~~A~~~  107 (121)
T 1hxi_A           30 LANLAEAALAFEAVCQKEPEREEAWRSLGLTQAE-NEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN-ANAALAS  107 (121)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHH
Confidence            4999999999999999999999999999988777 9999999999999999999999999999999999995 9999999


Q ss_pred             HHHHHHhCCCCHH
Q 029199          143 YERAVHASPEDSH  155 (197)
Q Consensus       143 ~~~al~~~p~~~~  155 (197)
                      |+++++++|+++.
T Consensus       108 ~~~al~~~P~~~~  120 (121)
T 1hxi_A          108 LRAWLLSQPQYEQ  120 (121)
T ss_dssp             HHHHHC-------
T ss_pred             HHHHHHhCcCCCC
Confidence            9999999998764

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.74  E-value=2e-17  Score=121.97  Aligned_cols=100  Identities=17%  Similarity=0.216  Sum_probs=90.2

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 029199           63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDL----------PKAEEYYSRAILADPGDGEILSQYAKLVWEL  132 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~----------~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~  132 (197)
                      .+.+++|++.|+++++++|+++.+|+++|.++.. .+++          ++|+..|++||+++|+++.+++++|.+|..+
T Consensus        15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~-l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l   93 (158)
T 1zu2_A           15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLE-LSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF   93 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-hcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence            4789999999999999999999999999988777 7764          5999999999999999999999999999987


Q ss_pred             c----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 029199          133 H----------NDQDRAATYYERAVHASPEDSHVHASYAGF  163 (197)
Q Consensus       133 ~----------~~~~~A~~~~~~al~~~p~~~~~~~~la~~  163 (197)
                      |          +++++|+++|++|++++|++...+..+..+
T Consensus        94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~  134 (158)
T 1zu2_A           94 AFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT  134 (158)
T ss_dssp             HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            5          259999999999999999998877766544

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.74  E-value=1.4e-16  Score=109.61  Aligned_cols=121  Identities=23%  Similarity=0.373  Sum_probs=108.6

Q ss_pred             CCCC-hhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHH
Q 029199           26 GTVG-QEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKA  104 (197)
Q Consensus        26 ~p~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A  104 (197)
                      +|.. +..++..|..+..                    .|++++|++.|+++++.+|+++.++..+|.++.. .|++++|
T Consensus         4 ~~~~~~~~~~~~~~~~~~--------------------~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A   62 (125)
T 1na0_A            4 DPGNSAEAWYNLGNAYYK--------------------QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK-QGDYDEA   62 (125)
T ss_dssp             ---CHHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHH
T ss_pred             CccccHHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHH-hCCHHHH
Confidence            4544 6777777776655                    4999999999999999999999999999988877 9999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 029199          105 EEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETE  168 (197)
Q Consensus       105 ~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  168 (197)
                      +..|+++++++|+++.++.++|.++...++ +++|+.+|+++++.+|+++.++.+++.++..+|
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           63 IEYYQKALELDPNNAEAWYNLGNAYYKQGD-YDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhCCccHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence            999999999999999999999999999884 999999999999999999999999999998765

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.74  E-value=1.1e-17  Score=130.79  Aligned_cols=155  Identities=12%  Similarity=-0.006  Sum_probs=138.4

Q ss_pred             CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCC
Q 029199            3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPG   82 (197)
Q Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~   82 (197)
                      |.++...+++.+|+..|..+++.+|.++..+...|..+..                    .|++++|+++|+++++++|+
T Consensus        50 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~--------------------~~~~~~A~~~~~~al~~~~~  109 (275)
T 1xnf_A           50 GVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQ--------------------AGNFDAAYEAFDSVLELDPT  109 (275)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH--------------------ccCHHHHHHHHHHHHhcCcc
Confidence            5677888999999999999999999999999999988776                    49999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------
Q 029199           83 NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPED---------  153 (197)
Q Consensus        83 ~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~---------  153 (197)
                      ++.++.++|.++.. .|++++|+.+|+++++++|+++.....++.+ ...+ ++++|+.++++++...|++         
T Consensus       110 ~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~  186 (275)
T 1xnf_A          110 YNYAHLNRGIALYY-GGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKL-DEKQAKEVLKQHFEKSDKEQWGWNIVEF  186 (275)
T ss_dssp             CTHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHH-CHHHHHHHHHHHHHHSCCCSTHHHHHHH
T ss_pred             ccHHHHHHHHHHHH-hccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhc-CHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence            99999999988887 9999999999999999999999887777755 4547 4899999998888877654         


Q ss_pred             ----------------------------HHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          154 ----------------------------SHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       154 ----------------------------~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                                                  +.+++.+|.++..+|++++|...+++.
T Consensus       187 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  241 (275)
T 1xnf_A          187 YLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLA  241 (275)
T ss_dssp             HTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence                                        678899999999999999998888874

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.73  E-value=1.6e-17  Score=130.58  Aligned_cols=136  Identities=13%  Similarity=0.078  Sum_probs=123.0

Q ss_pred             cccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcC
Q 029199           23 QERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGN---PLFLSNYAQFLYQSKQ   99 (197)
Q Consensus        23 ~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~---~~~~~~la~~l~~~~g   99 (197)
                      .+..|.++..++..|..+..                    .|++++|+..|+++++.+|++   +.+++.+|.+++. .|
T Consensus         8 ~~~~~~~~~~~~~~a~~~~~--------------------~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~-~~   66 (261)
T 3qky_A            8 GRLRHSSPQEAFERAMEFYN--------------------QGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQ-NK   66 (261)
T ss_dssp             ---CCSSHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHH-TT
T ss_pred             CCCCCCCHHHHHHHHHHHHH--------------------hCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHH-hC
Confidence            35678899999999998776                    499999999999999999999   9999999988887 99


Q ss_pred             CHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHH--------HcCCHHHHHHHHHHHHHhCCCCHHHH-----------
Q 029199          100 DLPKAEEYYSRAILADPGD---GEILSQYAKLVWE--------LHNDQDRAATYYERAVHASPEDSHVH-----------  157 (197)
Q Consensus       100 ~~~~A~~~~~~al~l~P~~---~~~~~~lg~~l~~--------~~~~~~~A~~~~~~al~~~p~~~~~~-----------  157 (197)
                      ++++|+..|+++++++|++   +.+++.+|.+++.        .|+ +++|+..|+++++.+|+++.++           
T Consensus        67 ~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~-~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~  145 (261)
T 3qky_A           67 EYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTD-TRKAIEAFQLFIDRYPNHELVDDATQKIRELRA  145 (261)
T ss_dssp             CHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHH-HHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchh-HHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHH
Confidence            9999999999999998855   6789999999998        885 9999999999999999998777           


Q ss_pred             ------HHHHHHHHHcCCccccccCCCcc
Q 029199          158 ------ASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       158 ------~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                            +.+|.++..+|++++|+..|+++
T Consensus       146 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~  174 (261)
T 3qky_A          146 KLARKQYEAARLYERRELYEAAAVTYEAV  174 (261)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence                  88999999999999999988885

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.73  E-value=3.4e-17  Score=118.94  Aligned_cols=116  Identities=18%  Similarity=0.169  Sum_probs=106.6

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 029199           63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATY  142 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~  142 (197)
                      .|++++|+..|+++++++|+++.++.++|.++.. .|++++|+.+|+++++++|+++.+++++|.++...|+ +++|+.+
T Consensus        26 ~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~  103 (166)
T 1a17_A           26 AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLR-TECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK-FRAALRD  103 (166)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcc-HHHHHHH
Confidence            4999999999999999999999999999988777 9999999999999999999999999999999999885 9999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHH--HHHcCCccccccCCCcc
Q 029199          143 YERAVHASPEDSHVHASYAGF--LWETEEDNDECDAPSEL  180 (197)
Q Consensus       143 ~~~al~~~p~~~~~~~~la~~--~~~~g~~~ea~~~~~~~  180 (197)
                      |+++++++|+++.++..++.+  +...|++++|...+.+.
T Consensus       104 ~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  143 (166)
T 1a17_A          104 YETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK  143 (166)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence            999999999999998555555  88889999998777654

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.73  E-value=2.1e-17  Score=121.16  Aligned_cols=124  Identities=18%  Similarity=0.125  Sum_probs=110.1

Q ss_pred             ChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHh------------------CCCCHHHHHHH
Q 029199           29 GQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEE------------------NPGNPLFLSNY   90 (197)
Q Consensus        29 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~------------------~P~~~~~~~~l   90 (197)
                      .+..+...|..+..                    .|++++|+..|++++.+                  +|.+..+|+++
T Consensus        10 ~a~~~~~~G~~~~~--------------------~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nl   69 (162)
T 3rkv_A           10 SVEALRQKGNELFV--------------------QKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANM   69 (162)
T ss_dssp             HHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHH
Confidence            34556667766655                    49999999999999999                  77888999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCC
Q 029199           91 AQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDS-HVHASYAGFLWETEE  169 (197)
Q Consensus        91 a~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~  169 (197)
                      |.++.. +|++++|+.+++++++++|+++.+++++|.++..+|+ +++|+.+|+++++++|+++ .+...++.+...+++
T Consensus        70 a~~~~~-~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~-~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~  147 (162)
T 3rkv_A           70 SQCYLN-IGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWK-LDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAE  147 (162)
T ss_dssp             HHHHHH-HTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHh-cCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhc-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence            988887 9999999999999999999999999999999999885 9999999999999999999 778899999888876


Q ss_pred             ccccc
Q 029199          170 DNDEC  174 (197)
Q Consensus       170 ~~ea~  174 (197)
                      ..+..
T Consensus       148 ~~~~~  152 (162)
T 3rkv_A          148 KKADS  152 (162)
T ss_dssp             HTTSS
T ss_pred             HHHHH
Confidence            66653

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.73  E-value=3e-18  Score=145.13  Aligned_cols=174  Identities=16%  Similarity=0.076  Sum_probs=136.1

Q ss_pred             chhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCC--------CCCCCCCC------CcccCCCCCHHHHH
Q 029199            5 ALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGG--------GTGGGGSG------FYPAGSGGDSQGVE   70 (197)
Q Consensus         5 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~--------~~~~~~~~------~~~~~~~g~~~~A~   70 (197)
                      ++...+++.+|+..|..+++.+|.++..+...|..+...|.+..        ....|...      +..+...|++++|+
T Consensus       279 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  358 (514)
T 2gw1_A          279 IMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCE  358 (514)
T ss_dssp             HHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHH
Confidence            34444555555555555555555555555555555444443322        01122221      12334469999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHH---HcCCHHHHHH
Q 029199           71 EYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGE------ILSQYAKLVWE---LHNDQDRAAT  141 (197)
Q Consensus        71 ~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~------~~~~lg~~l~~---~~~~~~~A~~  141 (197)
                      ..|+++++.+|+++.++..+|.++.. .|++++|+.+|+++++++|+++.      ++.++|.++..   .|+ +++|+.
T Consensus       359 ~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~A~~  436 (514)
T 2gw1_A          359 TLFSEAKRKFPEAPEVPNFFAEILTD-KNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVEN-FIEATN  436 (514)
T ss_dssp             HHHHHHHHHSTTCSHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTH-HHHHHH
T ss_pred             HHHHHHHHHcccCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCC-HHHHHH
Confidence            99999999999999999999988887 99999999999999999999866      99999999998   885 999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          142 YYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       142 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      +|++++..+|+++.++..+|.++..+|++++|...++++
T Consensus       437 ~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  475 (514)
T 2gw1_A          437 LLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEES  475 (514)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            999999999999999999999999999999999888874

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.72  E-value=1.7e-17  Score=115.68  Aligned_cols=108  Identities=12%  Similarity=0.201  Sum_probs=95.9

Q ss_pred             CCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 029199           63 GGDSQGVEEYYKKMVEE---NPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRA  139 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~---~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A  139 (197)
                      .|++++|+.+|++++++   +|+++.+++++|.+++. .|++++|+.+|+++++++|+++.+++++|.++..+|+ +++|
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~-~~~A   80 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRT-LGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGR-YEQG   80 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-HHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCC-HHHH
Confidence            58999999999999999   69999999999988887 9999999999999999999999999999999999995 9999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccc
Q 029199          140 ATYYERAVHASPEDSHVHASYAGFLWETEEDND  172 (197)
Q Consensus       140 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~e  172 (197)
                      +.+|+++++..|+++.+......+....+..++
T Consensus        81 ~~~~~~al~~~p~~~~~~~~~~ai~~~~~~l~~  113 (117)
T 3k9i_A           81 VELLLKIIAETSDDETIQSYKQAILFYADKLDE  113 (117)
T ss_dssp             HHHHHHHHHHHCCCHHHHHTHHHHHHHTTCTTC
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999988777777666666655

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.72  E-value=9e-17  Score=111.68  Aligned_cols=116  Identities=22%  Similarity=0.389  Sum_probs=109.9

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 029199           63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATY  142 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~  142 (197)
                      .|++++|++.|+++++.+|++..++..+|.++.. .|++++|+..|+++++.+|.++.++.++|.++...| ++++|+.+
T Consensus        14 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~   91 (136)
T 2fo7_A           14 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK-QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG-DYDEAIEY   91 (136)
T ss_dssp             HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT-CHHHHHHH
T ss_pred             cCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHH-hcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhc-CHHHHHHH
Confidence            4899999999999999999999999999988777 999999999999999999999999999999999988 49999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          143 YERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       143 ~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      ++++++..|+++.++..+|.++...|++++|...+.++
T Consensus        92 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~  129 (136)
T 2fo7_A           92 YQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA  129 (136)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence            99999999999999999999999999999998887764

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.72  E-value=9e-19  Score=144.00  Aligned_cols=165  Identities=8%  Similarity=-0.083  Sum_probs=135.5

Q ss_pred             CcchhHHHHHHHHhhhcCc----ccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCccc-CCCCCHHHHHHHHHHHH
Q 029199            3 GTALSEEVKVMEALWNAGF----EQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPA-GSGGDSQGVEEYYKKMV   77 (197)
Q Consensus         3 ~~~~~~~~~~~~a~~~~~~----~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~A~~~~~~al   77 (197)
                      |.++.....+++|+..+..    .+...|..  .|...|.....         .|.+....+ ...+++++|+..|++++
T Consensus        72 g~~~~~~~~~e~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~---------i~~~~~l~f~~~L~~~~~A~~~~~~a~  140 (336)
T 1p5q_A           72 GENLDLPYGLERAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQ---------IPPNAELKYELHLKSFEKAKESWEMNS  140 (336)
T ss_dssp             GGGGTCCHHHHHHHTTCCTTCEEEEEECTTT--TTTTTCBGGGT---------BCSSCCEEEEEEEEEEECCCCGGGCCH
T ss_pred             CCccccchHHHHHHhcCCCCCeEEEEECCcc--ccCcCCCCccC---------CCCCCeEEEEEEEeecccccchhcCCH
Confidence            4555556789999999998    67777765  33333332211         111111111 12467788999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHHcCCHHHHHHH
Q 029199           78 EENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGD---------------GEILSQYAKLVWELHNDQDRAATY  142 (197)
Q Consensus        78 ~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~---------------~~~~~~lg~~l~~~~~~~~~A~~~  142 (197)
                      ..+|+++.+++++|.+++. .|++++|+.+|+++++++|++               +.+++++|.++..+++ +++|+.+
T Consensus       141 ~~~p~~a~~~~~~g~~~~~-~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~-~~~A~~~  218 (336)
T 1p5q_A          141 EEKLEQSTIVKERGTVYFK-EGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQA-FSAAIES  218 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTC-HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCC-HHHHHHH
Confidence            9999999999999988887 999999999999999999999               6999999999999885 9999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          143 YERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       143 ~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      |+++++++|+++.+++++|.++..+|++++|...|+++
T Consensus       219 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a  256 (336)
T 1p5q_A          219 CNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKV  256 (336)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999885

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.72  E-value=3e-16  Score=111.75  Aligned_cols=121  Identities=21%  Similarity=0.210  Sum_probs=106.7

Q ss_pred             cCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCH
Q 029199           25 RGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGN---PLFLSNYAQFLYQSKQDL  101 (197)
Q Consensus        25 ~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~---~~~~~~la~~l~~~~g~~  101 (197)
                      ..|.++..++..|.....                    .|++++|+++|+++++++|++   ..++.++|.++.. .|++
T Consensus        23 ~~~~~~~~~~~~a~~~~~--------------------~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~-~~~~   81 (148)
T 2dba_A           23 PGASSVEQLRKEGNELFK--------------------CGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLK-LEDY   81 (148)
T ss_dssp             TTCCCHHHHHHHHHHHHT--------------------TTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH-TTCH
T ss_pred             cchHHHHHHHHHHHHHHH--------------------hCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHH-HccH
Confidence            345556666666665544                    599999999999999999998   8999999988777 9999


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 029199          102 PKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWET  167 (197)
Q Consensus       102 ~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  167 (197)
                      ++|+.+|+++++++|+++.+++++|.++...++ +++|+.+|+++++++|+++.++..++.+....
T Consensus        82 ~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  146 (148)
T 2dba_A           82 DKAETEASKAIEKDGGDVKALYRRSQALEKLGR-LDQAVLDLQRCVSLEPKNKVFQEALRNISGPS  146 (148)
T ss_dssp             HHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHCSSCHHHHHHHHHHHCSC
T ss_pred             HHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCcHHHHHHHHHHHhhc
Confidence            999999999999999999999999999999885 99999999999999999999999988876443

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.71  E-value=2.4e-17  Score=121.75  Aligned_cols=112  Identities=12%  Similarity=0.074  Sum_probs=98.3

Q ss_pred             hhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHh
Q 029199           30 QEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPG-------NPL-----FLSNYAQFLYQS   97 (197)
Q Consensus        30 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-------~~~-----~~~~la~~l~~~   97 (197)
                      +..++..|..+..                    .|++++|+.+|+++++++|+       +..     +|.|+|.++.. 
T Consensus        11 a~~~~~~G~~l~~--------------------~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~-   69 (159)
T 2hr2_A           11 AYLALSDAQRQLV--------------------AGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAG-   69 (159)
T ss_dssp             HHHHHHHHHHHHH--------------------HTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHH--------------------CCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHH-
Confidence            4566777777666                    49999999999999999999       444     99999988887 


Q ss_pred             cCCHHHHHHHHHHHHHh-------CCCCHHHH----HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 029199           98 KQDLPKAEEYYSRAILA-------DPGDGEIL----SQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGF  163 (197)
Q Consensus        98 ~g~~~~A~~~~~~al~l-------~P~~~~~~----~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  163 (197)
                      +|++++|+.+|+++|++       +|+++.+|    +++|.++..+|+ +++|+.+|+++++++|++..+.-.+..+
T Consensus        70 Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr-~eEAl~~y~kAlel~p~d~~~~~~~~~~  145 (159)
T 2hr2_A           70 LRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGR-GAEAMPEFKKVVEMIEERKGETPGKERM  145 (159)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHCCSCCTTHHHH
T ss_pred             CCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCC-HHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence            99999999999999999       99999999    999999999996 9999999999999999887665444443

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.71  E-value=3.3e-16  Score=106.85  Aligned_cols=101  Identities=19%  Similarity=0.211  Sum_probs=95.7

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 029199           63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATY  142 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~  142 (197)
                      .|++++|+..|++++..+|+++.++.++|.++.. .|++++|+..++++++++|+++.+++++|.++...|+ +++|.++
T Consensus        17 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~   94 (118)
T 1elw_A           17 VGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAK-KGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR-FEEAKRT   94 (118)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHh-hccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhh-HHHHHHH
Confidence            4999999999999999999999999999988877 9999999999999999999999999999999999885 9999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHH
Q 029199          143 YERAVHASPEDSHVHASYAGFLW  165 (197)
Q Consensus       143 ~~~al~~~p~~~~~~~~la~~~~  165 (197)
                      |+++++.+|+++.++..++.+..
T Consensus        95 ~~~~~~~~~~~~~~~~~l~~~~~  117 (118)
T 1elw_A           95 YEEGLKHEANNPQLKEGLQNMEA  117 (118)
T ss_dssp             HHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCCHHHHHHHHHhhc
Confidence            99999999999999999988754

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.71  E-value=1.4e-16  Score=136.96  Aligned_cols=118  Identities=18%  Similarity=0.149  Sum_probs=107.4

Q ss_pred             ccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 029199           59 PAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDR  138 (197)
Q Consensus        59 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~  138 (197)
                      .+...|++++|+++|+++++++|+++.+|+++|.++.. +|++++|+.+|+++++++|+++.+++++|.++..+|+ +++
T Consensus        15 ~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~-~~e   92 (477)
T 1wao_1           15 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLR-TECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK-FRA   92 (477)
T ss_dssp             STTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTC-HHH
T ss_pred             HHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHH
Confidence            44456999999999999999999999999999988887 9999999999999999999999999999999999885 999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHH--HHHcCCccccccCCC
Q 029199          139 AATYYERAVHASPEDSHVHASYAGF--LWETEEDNDECDAPS  178 (197)
Q Consensus       139 A~~~~~~al~~~p~~~~~~~~la~~--~~~~g~~~ea~~~~~  178 (197)
                      |+++|+++++++|+++.++.+++.+  +..+|++++|...++
T Consensus        93 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           93 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            9999999999999999999999999  888999999988887

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.71  E-value=3.5e-18  Score=137.37  Aligned_cols=156  Identities=13%  Similarity=0.008  Sum_probs=131.6

Q ss_pred             CcchhHHHHHHHHhhhcCcccccCCC------ChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHH
Q 029199            3 GTALSEEVKVMEALWNAGFEQERGTV------GQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKM   76 (197)
Q Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~~~p~------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a   76 (197)
                      |+++...|++.+|+..|..+++..+.      .+..+...|..+..                    .|++++|+.+|+++
T Consensus        44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~--------------------~g~~~~A~~~~~~A  103 (292)
T 1qqe_A           44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKS--------------------GGNSVNAVDSLENA  103 (292)
T ss_dssp             HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH--------------------CCCHHHHHHHHHHH
Confidence            55677778888888888877766431      24677777777766                    49999999999999


Q ss_pred             HHhCCCC------HHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHcCCHHHHHHHH
Q 029199           77 VEENPGN------PLFLSNYAQFLYQSK-QDLPKAEEYYSRAILADPGD------GEILSQYAKLVWELHNDQDRAATYY  143 (197)
Q Consensus        77 l~~~P~~------~~~~~~la~~l~~~~-g~~~~A~~~~~~al~l~P~~------~~~~~~lg~~l~~~~~~~~~A~~~~  143 (197)
                      +++.|..      ..++.++|.++.. . |++++|+.+|++++++.|.+      ..++.++|.++..+|+ +++|+.+|
T Consensus       104 l~l~~~~g~~~~~a~~~~~lg~~~~~-~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~  181 (292)
T 1qqe_A          104 IQIFTHRGQFRRGANFKFELGEILEN-DLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQ-YIEASDIY  181 (292)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHH-hhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCC-HHHHHHHH
Confidence            9998764      5689999977766 6 99999999999999998865      5789999999999885 99999999


Q ss_pred             HHHHHhCCCCHH-------HHHHHHHHHHHcCCccccccCCCcc
Q 029199          144 ERAVHASPEDSH-------VHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       144 ~~al~~~p~~~~-------~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      ++++++.|+++.       ++.++|.++..+|++++|...+++.
T Consensus       182 ~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  225 (292)
T 1qqe_A          182 SKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEG  225 (292)
T ss_dssp             HHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGG
T ss_pred             HHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            999999988764       6799999999999999998888874

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.70  E-value=9.7e-18  Score=143.12  Aligned_cols=154  Identities=14%  Similarity=0.084  Sum_probs=111.3

Q ss_pred             chhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCH
Q 029199            5 ALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNP   84 (197)
Q Consensus         5 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~   84 (197)
                      ++...+++.+|+..|..+++.+|.++..++..|..+..                    .|++++|++.|+++++.+|+++
T Consensus       319 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~--------------------~g~~~~A~~~~~~~~~~~~~~~  378 (537)
T 3fp2_A          319 MYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYK--------------------QGKFTESEAFFNETKLKFPTLP  378 (537)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHHCTTCT
T ss_pred             HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHHhCCCCh
Confidence            34444455555555555555555555555554444433                    4777777777777777777777


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH------HHHHHHHHHHH----------cCCHHHHHHHHHHHHH
Q 029199           85 LFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEI------LSQYAKLVWEL----------HNDQDRAATYYERAVH  148 (197)
Q Consensus        85 ~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~------~~~lg~~l~~~----------~~~~~~A~~~~~~al~  148 (197)
                      .++..+|.++.. .|++++|+.+|+++++++|+++.+      ++.+|.++...          | ++++|+.+|+++++
T Consensus       379 ~~~~~l~~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~A~~~~~~a~~  456 (537)
T 3fp2_A          379 EVPTFFAEILTD-RGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEE-KFNAAIKLLTKACE  456 (537)
T ss_dssp             HHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHH-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-hCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHh-HHHHHHHHHHHHHH
Confidence            777777766665 777777777777777777665544      34445666666          6 48899999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          149 ASPEDSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       149 ~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      .+|+++.++.++|.++..+|++++|...|++.
T Consensus       457 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  488 (537)
T 3fp2_A          457 LDPRSEQAKIGLAQLKLQMEKIDEAIELFEDS  488 (537)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            99999999999999999999999998888874

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.70  E-value=9.9e-17  Score=112.57  Aligned_cols=98  Identities=16%  Similarity=0.091  Sum_probs=92.7

Q ss_pred             CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 029199           81 PGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASY  160 (197)
Q Consensus        81 P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  160 (197)
                      |..+..|+++|..++. .|++++|+..|+++++++|+++.+++++|.++..+|+ +++|+.+|+++++++|+++.+++++
T Consensus         1 p~~a~~~~~~g~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~l   78 (126)
T 3upv_A            1 SMKAEEARLEGKEYFT-KSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMS-FPEAIADCNKAIEKDPNFVRAYIRK   78 (126)
T ss_dssp             CHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CchHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhCCCcHHHHHHH
Confidence            4567889999988887 9999999999999999999999999999999999885 9999999999999999999999999


Q ss_pred             HHHHHHcCCccccccCCCcc
Q 029199          161 AGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       161 a~~~~~~g~~~ea~~~~~~~  180 (197)
                      |.++..+|++++|...+++.
T Consensus        79 g~~~~~~~~~~~A~~~~~~a   98 (126)
T 3upv_A           79 ATAQIAVKEYASALETLDAA   98 (126)
T ss_dssp             HHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHhCHHHHHHHHHHH
Confidence            99999999999999999884

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.70  E-value=1.3e-17  Score=124.24  Aligned_cols=115  Identities=15%  Similarity=0.128  Sum_probs=103.1

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HHcCCHHHHHH
Q 029199           63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVW-ELHNDQDRAAT  141 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~-~~~~~~~~A~~  141 (197)
                      .|++++|+..|+++++.+|+++.+++++|.++.. .|++++|+..|+++++++| ++.++..++.+.. ..++ ..+|+.
T Consensus        19 ~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~-~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~-~~~a~~   95 (176)
T 2r5s_A           19 QGEHAQALNVIQTLSDELQSRGDVKLAKADCLLE-TKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAA-ESPELK   95 (176)
T ss_dssp             TTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHH-TTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHT-SCHHHH
T ss_pred             cCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH-CCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcc-cchHHH
Confidence            4999999999999999999999999999988877 9999999999999999999 9988777775533 3233 346899


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          142 YYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       142 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      +|+++++++|+++.+++++|.++..+|++++|...++++
T Consensus        96 ~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~  134 (176)
T 2r5s_A           96 RLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNI  134 (176)
T ss_dssp             HHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence            999999999999999999999999999999999888875

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.70  E-value=2e-16  Score=120.02  Aligned_cols=140  Identities=14%  Similarity=0.046  Sum_probs=118.3

Q ss_pred             CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCC
Q 029199            3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPG   82 (197)
Q Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~   82 (197)
                      |.++-..+++.+|+..|..++  +| ++..++..|..+..                    .|++++|+++|+++++++|+
T Consensus        13 g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~--------------------~g~~~~A~~~~~~al~~~~~   69 (213)
T 1hh8_A           13 GVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTI--------------------LKNMTEAEKAFTRSINRDKH   69 (213)
T ss_dssp             HHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHHhCcc
Confidence            566778889999999998875  33 77888888888766                    48999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 029199           83 NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDG----------------EILSQYAKLVWELHNDQDRAATYYERA  146 (197)
Q Consensus        83 ~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~----------------~~~~~lg~~l~~~~~~~~~A~~~~~~a  146 (197)
                      ++.+++++|.++.. .|++++|+.+|++++++.|+++                .+++++|.++...|+ +++|+.+|+++
T Consensus        70 ~~~~~~~lg~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~a  147 (213)
T 1hh8_A           70 LAVAYFQRGMLYYQ-TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEE-WKKAEEQLALA  147 (213)
T ss_dssp             CHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTC-HHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHH-cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccC-HHHHHHHHHHH
Confidence            99999999988777 9999999999999999888877                999999999999884 99999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHHc
Q 029199          147 VHASPEDSHVHASYAGFLWET  167 (197)
Q Consensus       147 l~~~p~~~~~~~~la~~~~~~  167 (197)
                      ++++|++.......+......
T Consensus       148 l~~~p~~~~~~~~~a~~~~~~  168 (213)
T 1hh8_A          148 TSMKSEPRHSKIDKAMECVWK  168 (213)
T ss_dssp             HTTCCSGGGGHHHHHHHHHHT
T ss_pred             HHcCcccccchHHHHHHHHHh
Confidence            999998766666555555443

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.69  E-value=4.9e-17  Score=131.37  Aligned_cols=153  Identities=12%  Similarity=0.116  Sum_probs=131.4

Q ss_pred             HHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCC-------HHHHHHHHHHHHH-hCCCCH
Q 029199           13 MEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGD-------SQGVEEYYKKMVE-ENPGNP   84 (197)
Q Consensus        13 ~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~-------~~~A~~~~~~al~-~~P~~~   84 (197)
                      .+|+..|..+++.+|+++.+|+..|..+...+.             .+...|+       .++|+..|+++++ ++|++.
T Consensus        33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~-------------~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~   99 (308)
T 2ond_A           33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSK-------------LLAEKGDMNNAKLFSDEAANIYERAISTLLKKNM   99 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-------------HHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCH
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhch-------------hhhhccchhhcccchHHHHHHHHHHHHHhCcccH
Confidence            688899999999999999999999977642100             0000155       4999999999999 799999


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 029199           85 LFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGE-ILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGF  163 (197)
Q Consensus        85 ~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~-~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  163 (197)
                      .+|.++|.++.. .|++++|+..|+++++++|+++. +|.++|.++...|+ +++|+..|+++++.+|.+..+|...+.+
T Consensus       100 ~~~~~~~~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~a~~~~p~~~~~~~~~a~~  177 (308)
T 2ond_A          100 LLYFAYADYEES-RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEG-IKSGRMIFKKAREDARTRHHVYVTAALM  177 (308)
T ss_dssp             HHHHHHHHHHHH-TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHC-HHHHHHHHHHHHTSTTCCTHHHHHHHHH
T ss_pred             HHHHHHHHHHHh-cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcC-HHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            999999977776 99999999999999999999997 99999999999886 9999999999999999999998877777


Q ss_pred             HHH-cCCccccccCCCcc
Q 029199          164 LWE-TEEDNDECDAPSEL  180 (197)
Q Consensus       164 ~~~-~g~~~ea~~~~~~~  180 (197)
                      ... +|++++|...|++.
T Consensus       178 ~~~~~~~~~~A~~~~~~a  195 (308)
T 2ond_A          178 EYYCSKDKSVAFKIFELG  195 (308)
T ss_dssp             HHHTSCCHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHH
Confidence            544 79999999888874

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.69  E-value=1.2e-17  Score=140.84  Aligned_cols=160  Identities=16%  Similarity=0.180  Sum_probs=135.4

Q ss_pred             CcchhHHHHHHHHhhhcCccccc--------CCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHH
Q 029199            3 GTALSEEVKVMEALWNAGFEQER--------GTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYK   74 (197)
Q Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~~--------~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~   74 (197)
                      |.++...|++.+|+..|.++++.        .+..+.++...|+++..+|.                  +++++|+.+|+
T Consensus       101 a~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~------------------~~y~~A~~~~~  162 (472)
T 4g1t_A          101 AWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGG------------------NQNERAKVCFE  162 (472)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCT------------------THHHHHHHHHH
T ss_pred             HHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHcc------------------ccHHHHHHHHH
Confidence            45778889999999888776654        34567888889988766543                  78999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHh
Q 029199           75 KMVEENPGNPLFLSNYAQFLYQ--SKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELH---NDQDRAATYYERAVHA  149 (197)
Q Consensus        75 ~al~~~P~~~~~~~~la~~l~~--~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~---~~~~~A~~~~~~al~~  149 (197)
                      ++++++|+++.++.+++.+++.  ..++.++|++.|+++++++|+++.++.++|..+..++   +++++|.++|++++.+
T Consensus       163 kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~  242 (472)
T 4g1t_A          163 KALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK  242 (472)
T ss_dssp             HHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Confidence            9999999999999999966543  2578889999999999999999999999998766543   2478999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          150 SPEDSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       150 ~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      +|+++.++.++|.++...|++++|...+++.
T Consensus       243 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a  273 (472)
T 4g1t_A          243 APGVTDVLRSAAKFYRRKDEPDKAIELLKKA  273 (472)
T ss_dssp             CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHcCchHHHHHHHHHH
Confidence            9999999999999999999999999888874

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.69  E-value=2.5e-16  Score=111.74  Aligned_cols=96  Identities=15%  Similarity=0.268  Sum_probs=79.2

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHHcCC
Q 029199           63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDG-------EILSQYAKLVWELHND  135 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~-------~~~~~lg~~l~~~~~~  135 (197)
                      .|++++|+.+|+++++++|+++.+|+++|.+++. +|++++|+.+|+++++++|+++       .++.++|.++..++ +
T Consensus        21 ~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~-~   98 (127)
T 4gcn_A           21 QKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFE-EKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQN-D   98 (127)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT-C
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHH-hhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcC-C
Confidence            4889999999999999999999999999977777 8999999999999998888764       47788888888877 4


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHH
Q 029199          136 QDRAATYYERAVHASPEDSHVHASYA  161 (197)
Q Consensus       136 ~~~A~~~~~~al~~~p~~~~~~~~la  161 (197)
                      +++|+++|+++++..|+ ++....+.
T Consensus        99 ~~~A~~~~~kal~~~~~-~~~~~~l~  123 (127)
T 4gcn_A           99 LSLAVQWFHRSLSEFRD-PELVKKVK  123 (127)
T ss_dssp             HHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCcC-HHHHHHHH
Confidence            89999999999988874 55554443

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.69  E-value=7.2e-17  Score=129.63  Aligned_cols=100  Identities=18%  Similarity=0.162  Sum_probs=89.9

Q ss_pred             hCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH------------------
Q 029199           79 ENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAA------------------  140 (197)
Q Consensus        79 ~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~------------------  140 (197)
                      .-|++...+..+|..+.. .|++++|+..|+++++++|+++.+++++|.++...|+ +++|+                  
T Consensus       112 ~lp~~~~~~~~~a~~~~~-~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~-~~~A~~~l~~~~~~~p~~~~~~~  189 (287)
T 3qou_A          112 VLPREEELXAQQAMQLMQ-ESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNR-SEDAEAVLXTIPLQDQDTRYQGL  189 (287)
T ss_dssp             HSCCHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTC-HHHHHHHHTTSCGGGCSHHHHHH
T ss_pred             HcCCchhhHHHHHHHHHh-CCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCC-HHHHHHHHHhCchhhcchHHHHH
Confidence            349999999999988887 9999999999999999999999999999999988775 77765                  


Q ss_pred             ----------------HHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          141 ----------------TYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       141 ----------------~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                                      ..|+++++.+|+++.+++++|.++...|++++|...++++
T Consensus       190 ~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~  245 (287)
T 3qou_A          190 VAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGH  245 (287)
T ss_dssp             HHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence                            4456668889999999999999999999999999998885

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.68  E-value=1.1e-16  Score=140.43  Aligned_cols=150  Identities=10%  Similarity=-0.058  Sum_probs=136.8

Q ss_pred             CcchhHHHH----------HHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHH
Q 029199            3 GTALSEEVK----------VMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEY   72 (197)
Q Consensus         3 ~~~~~~~~~----------~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~   72 (197)
                      |.++...++          +.+++..++.+++.+|.+..+|..+|+.+..++.                  -++++++++
T Consensus        70 ~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~------------------~~~~~el~~  131 (567)
T 1dce_A           70 REVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPE------------------PNWARELEL  131 (567)
T ss_dssp             HHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSS------------------CCHHHHHHH
T ss_pred             HHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc------------------ccHHHHHHH
Confidence            445666666          8999999999999999999999999999988621                  278999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--------------cCCHH
Q 029199           73 YKKMVEENPGNPLFLSNYAQFLYQSKQ-DLPKAEEYYSRAILADPGDGEILSQYAKLVWEL--------------HNDQD  137 (197)
Q Consensus        73 ~~~al~~~P~~~~~~~~la~~l~~~~g-~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~--------------~~~~~  137 (197)
                      ++++++++|.+..+|..++.++.. .| .+++++++++++++.+|.|..+|.+++.++..+              + .++
T Consensus       132 ~~k~l~~d~~N~~aW~~R~~~l~~-l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~-~~~  209 (567)
T 1dce_A          132 CARFLEADERNFHCWDYRRFVAAQ-AAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPEN-VLL  209 (567)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHH-TCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHH-HHH
T ss_pred             HHHHHhhccccccHHHHHHHHHHH-cCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHH-HHH
Confidence            999999999999999999977776 88 999999999999999999999999999998886              3 379


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccc
Q 029199          138 RAATYYERAVHASPEDSHVHASYAGFLWETEEDND  172 (197)
Q Consensus       138 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~e  172 (197)
                      ++++++.+|+.++|+|..+|+.++.++...+++++
T Consensus       210 eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~  244 (567)
T 1dce_A          210 KELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV  244 (567)
T ss_dssp             HHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred             HHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence            99999999999999999999999999999999777

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.67  E-value=1e-17  Score=141.85  Aligned_cols=155  Identities=18%  Similarity=0.140  Sum_probs=144.0

Q ss_pred             CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCC
Q 029199            3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPG   82 (197)
Q Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~   82 (197)
                      |.++...|++.+|+..|..+++.+|. +..++..|..+...                    |++++|+..|+++++.+|+
T Consensus       244 ~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~--------------------~~~~~A~~~~~~~~~~~~~  302 (514)
T 2gw1_A          244 GIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADR--------------------NDSTEYYNYFDKALKLDSN  302 (514)
T ss_dssp             HHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTS--------------------SCCTTGGGHHHHHHTTCTT
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHC--------------------CCHHHHHHHHHHHhhcCcC
Confidence            45667788899999999999999999 99999988887763                    8999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 029199           83 NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAG  162 (197)
Q Consensus        83 ~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  162 (197)
                      ++.++..+|.++.. .|++++|+..|+++++++|+++.++.++|.++...|+ +++|+.+|+++++.+|+++.++..+|.
T Consensus       303 ~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~la~  380 (514)
T 2gw1_A          303 NSSVYYHRGQMNFI-LQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENK-FDDCETLFSEAKRKFPEAPEVPNFFAE  380 (514)
T ss_dssp             CTHHHHHHHHHHHH-TTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTC-HHHHHHHHHHHHHHSTTCSHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHcccCHHHHHHHHH
Confidence            99999999988887 9999999999999999999999999999999999884 999999999999999999999999999


Q ss_pred             HHHHcCCccccccCCCcc
Q 029199          163 FLWETEEDNDECDAPSEL  180 (197)
Q Consensus       163 ~~~~~g~~~ea~~~~~~~  180 (197)
                      ++...|++++|...++++
T Consensus       381 ~~~~~~~~~~A~~~~~~a  398 (514)
T 2gw1_A          381 ILTDKNDFDKALKQYDLA  398 (514)
T ss_dssp             HHHHTTCHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHH
Confidence            999999999998888775

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.67  E-value=2.8e-16  Score=109.15  Aligned_cols=129  Identities=25%  Similarity=0.336  Sum_probs=117.9

Q ss_pred             CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCC
Q 029199            3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPG   82 (197)
Q Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~   82 (197)
                      |.++...+++.+|+..|..+++..|.++..++..|..+..                    .|++++|++.|+++++.+|+
T Consensus         8 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~--------------------~~~~~~A~~~~~~~~~~~~~   67 (136)
T 2fo7_A            8 GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK--------------------QGDYDEAIEYYQKALELDPR   67 (136)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--------------------HTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHH--------------------hcCHHHHHHHHHHHHHHCCC
Confidence            5567788899999999999999999999998888877665                    38999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 029199           83 NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPED  153 (197)
Q Consensus        83 ~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~  153 (197)
                      ++.++..+|.++.. .|++++|+..++++++.+|.++.++..+|.++...|+ +++|..+|++++..+|++
T Consensus        68 ~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~~~~  136 (136)
T 2fo7_A           68 SAEAWYNLGNAYYK-QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD-YDEAIEYYQKALELDPRS  136 (136)
T ss_dssp             CHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHSTTC
T ss_pred             chHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcc-HHHHHHHHHHHHccCCCC
Confidence            99999999977776 9999999999999999999999999999999999884 999999999999999864

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.67  E-value=2.2e-15  Score=105.38  Aligned_cols=106  Identities=10%  Similarity=0.098  Sum_probs=95.8

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCH
Q 029199           63 GGDSQGVEEYYKKMVEENPGNP---LFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGD---GEILSQYAKLVWELHNDQ  136 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~P~~~---~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~---~~~~~~lg~~l~~~~~~~  136 (197)
                      .|++++|+..|+++++.+|+++   .+++.+|.+++. .|++++|+..|+++++.+|++   +.+++++|.++..+|+ +
T Consensus        15 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~-~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~-~   92 (129)
T 2xev_A           15 NGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYA-TRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGK-N   92 (129)
T ss_dssp             TTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTC-H
T ss_pred             hCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCC-H
Confidence            4999999999999999999998   899999988887 999999999999999999999   9999999999999884 9


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc
Q 029199          137 DRAATYYERAVHASPEDSHVHASYAGFLWETEED  170 (197)
Q Consensus       137 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  170 (197)
                      ++|+.+|+++++..|+++.+......+-...++.
T Consensus        93 ~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~~~  126 (129)
T 2xev_A           93 TEAQQTLQQVATQYPGSDAARVAQERLQSIRLGQ  126 (129)
T ss_dssp             HHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhhh
Confidence            9999999999999999999888777776655544

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.67  E-value=7.8e-17  Score=114.36  Aligned_cols=97  Identities=15%  Similarity=0.189  Sum_probs=89.0

Q ss_pred             CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-------
Q 029199           82 GNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDS-------  154 (197)
Q Consensus        82 ~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~-------  154 (197)
                      +.+.++.++|..++. .|++++|+.+|+++++++|+++.+++++|.++..+|+ +++|+++|+++++++|+++       
T Consensus         6 d~A~a~~~lG~~~~~-~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~a   83 (127)
T 4gcn_A            6 DAAIAEKDLGNAAYK-QKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKK-FAECVQFCEKAVEVGRETRADYKLIA   83 (127)
T ss_dssp             HHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred             HHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhh-HHHHHHHHHHHHHhCcccchhhHHHH
Confidence            345678899999998 9999999999999999999999999999999999885 9999999999999998764       


Q ss_pred             HHHHHHHHHHHHcCCccccccCCCcc
Q 029199          155 HVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       155 ~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      .+++++|.++..+|++++|+..|++.
T Consensus        84 ~~~~~lg~~~~~~~~~~~A~~~~~ka  109 (127)
T 4gcn_A           84 KAMSRAGNAFQKQNDLSLAVQWFHRS  109 (127)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            57899999999999999999988874

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.67  E-value=8.5e-16  Score=104.61  Aligned_cols=97  Identities=13%  Similarity=0.031  Sum_probs=91.6

Q ss_pred             CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHH
Q 029199           83 NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPED------SHV  156 (197)
Q Consensus        83 ~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~------~~~  156 (197)
                      ++.+|+++|.+++. .|++++|+.+|+++++++|+++.+++++|.++..+|+ +++|+++|+++++++|++      ..+
T Consensus         3 ~~~~~~~~g~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~~~~   80 (111)
T 2l6j_A            3 QFEKQKEQGNSLFK-QGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGE-YTQAIQMCQQGLRYTSTAEHVAIRSKL   80 (111)
T ss_dssp             HHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTSCSSTTSHHHHHHH
T ss_pred             hHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhCCCccHHHHHHHH
Confidence            46789999988777 9999999999999999999999999999999999885 999999999999999999      999


Q ss_pred             HHHHHHHHHHcCCccccccCCCccc
Q 029199          157 HASYAGFLWETEEDNDECDAPSELD  181 (197)
Q Consensus       157 ~~~la~~~~~~g~~~ea~~~~~~~~  181 (197)
                      ++.+|.++..+|+++++...++++|
T Consensus        81 ~~~~~~~~~~~~~~~~a~~~~~~~~  105 (111)
T 2l6j_A           81 QYRLELAQGAVGSVQIPVVEVDELP  105 (111)
T ss_dssp             HHHHHHHHHHHHCCCCCSSSSSSCS
T ss_pred             HHHHHHHHHHHHhHhhhHhHHHHhH
Confidence            9999999999999999999999875

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.67  E-value=5.8e-16  Score=113.49  Aligned_cols=116  Identities=9%  Similarity=0.064  Sum_probs=110.9

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 029199           63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATY  142 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~  142 (197)
                      .|++++|++.|+++++.+|+++.++..+|.++.. .|++++|+.+++++++.+|+++.++.++|.++...++ +++|+++
T Consensus        21 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~   98 (186)
T 3as5_A           21 AGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVK-TGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQK-YDLAVPL   98 (186)
T ss_dssp             HTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-HHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC-HHHHHHH
Confidence            4999999999999999999999999999988887 9999999999999999999999999999999999885 9999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          143 YERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       143 ~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      ++++++.+|+++.++..+|.++...|++++|...++++
T Consensus        99 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~  136 (186)
T 3as5_A           99 LIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIA  136 (186)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence            99999999999999999999999999999998888875

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.66  E-value=8.9e-16  Score=103.89  Aligned_cols=106  Identities=14%  Similarity=0.160  Sum_probs=81.7

Q ss_pred             CCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHH
Q 029199           26 GTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAE  105 (197)
Q Consensus        26 ~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~  105 (197)
                      +|+++..++..|..+..                    .|++++|+.+|+++++++|++..++.++|.++.. .|++++|+
T Consensus         2 ~p~~~~~~~~~~~~~~~--------------------~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~-~~~~~~A~   60 (112)
T 2kck_A            2 VDQNPEEYYLEGVLQYD--------------------AGNYTESIDLFEKAIQLDPEESKYWLMKGKALYN-LERYEEAV   60 (112)
T ss_dssp             CCSSTTGGGGHHHHHHS--------------------SCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-TTCHHHHH
T ss_pred             CCCcHHHHHHHHHHHHH--------------------hhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH-ccCHHHHH
Confidence            46677777777766555                    3788888888888888888888888888866666 78888888


Q ss_pred             HHHHHHHHhCCC--CHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCC
Q 029199          106 EYYSRAILADPG--DGEILSQYAKLVWEL-HNDQDRAATYYERAVHASPED  153 (197)
Q Consensus       106 ~~~~~al~l~P~--~~~~~~~lg~~l~~~-~~~~~~A~~~~~~al~~~p~~  153 (197)
                      .+|+++++++|+  ++.++.++|.++... ++ +++|++++++++...|++
T Consensus        61 ~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           61 DCYNYVINVIEDEYNKDVWAAKADALRYIEGK-EVEAEIAEARAKLEHHHH  110 (112)
T ss_dssp             HHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSC-SHHHHHHHHHHGGGCCCC
T ss_pred             HHHHHHHHhCcccchHHHHHHHHHHHHHHhCC-HHHHHHHHHHHhhcccCC
Confidence            888888888888  888888888887776 64 778888888888877765

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.66  E-value=7.3e-16  Score=116.84  Aligned_cols=113  Identities=16%  Similarity=0.110  Sum_probs=105.1

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 029199           63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATY  142 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~  142 (197)
                      .|++++|+..|++++  +| ++.+++++|.++.. .|++++|+.+|+++++++|+++.+++++|.++...|+ +++|+++
T Consensus        19 ~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~-~~~A~~~   93 (213)
T 1hh8_A           19 KKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTI-LKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEK-YDLAIKD   93 (213)
T ss_dssp             TTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHH
T ss_pred             hCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHccc-HHHHHHH
Confidence            499999999999995  44 78999999988887 9999999999999999999999999999999999885 9999999


Q ss_pred             HHHHHHhCCCCH----------------HHHHHHHHHHHHcCCccccccCCCcc
Q 029199          143 YERAVHASPEDS----------------HVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       143 ~~~al~~~p~~~----------------~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      |++++++.|++.                .+++++|.++..+|++++|...+++.
T Consensus        94 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  147 (213)
T 1hh8_A           94 LKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA  147 (213)
T ss_dssp             HHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            999999988877                99999999999999999998888774

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.66  E-value=5.2e-16  Score=113.93  Aligned_cols=99  Identities=16%  Similarity=0.113  Sum_probs=93.6

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 029199           80 NPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHAS  159 (197)
Q Consensus        80 ~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  159 (197)
                      ++.++..|+.+|.+++. .|++++|+.+|+++++++|+++.+++++|.++..+++ +++|+.+|+++++++|+++.+|++
T Consensus         7 ~~~~a~~~~~~g~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~   84 (164)
T 3sz7_A            7 PTPESDKLKSEGNAAMA-RKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQ-HEKAAEDAELATVVDPKYSKAWSR   84 (164)
T ss_dssp             CCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCCCHHHHHH
Confidence            46678899999988887 9999999999999999999999999999999999885 999999999999999999999999


Q ss_pred             HHHHHHHcCCccccccCCCcc
Q 029199          160 YAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       160 la~~~~~~g~~~ea~~~~~~~  180 (197)
                      +|.++..+|++++|...|++.
T Consensus        85 lg~~~~~~g~~~~A~~~~~~a  105 (164)
T 3sz7_A           85 LGLARFDMADYKGAKEAYEKG  105 (164)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHccCHHHHHHHHHHH
Confidence            999999999999999888875

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.66  E-value=5.1e-17  Score=137.04  Aligned_cols=170  Identities=14%  Similarity=0.015  Sum_probs=136.9

Q ss_pred             HHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCC---CC--------CCCCCCCCCc----------ccCCCCCHHH
Q 029199           10 VKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGR---GG--------GTGGGGSGFY----------PAGSGGDSQG   68 (197)
Q Consensus        10 ~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~---~~--------~~~~~~~~~~----------~~~~~g~~~~   68 (197)
                      +++++|+..|.++++.+|++++.+...|.....++..   ..        ....|.....          .....|++++
T Consensus       152 ~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~  231 (472)
T 4g1t_A          152 NQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGE  231 (472)
T ss_dssp             THHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CH
T ss_pred             ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHH
Confidence            4789999999999999999999998888764333322   21        1124443221          2234588999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc---------------
Q 029199           69 VEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELH---------------  133 (197)
Q Consensus        69 A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~---------------  133 (197)
                      |+++|++++.++|+++.++.++|.++.. .|++++|+..|+++++.+|+++.++.++|.++...+               
T Consensus       232 a~~~~~~al~~~~~~~~~~~~lg~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~  310 (472)
T 4g1t_A          232 GEKLVEEALEKAPGVTDVLRSAAKFYRR-KDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKR  310 (472)
T ss_dssp             HHHHHHHHHHHCSSCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHH
T ss_pred             HHHHHHHHHHhCccHHHHHHHHHHHHHH-cCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            9999999999999999999999988777 999999999999999999999999999998875421               


Q ss_pred             ---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          134 ---NDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       134 ---~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                         ..+++|+.+|++++.++|.++.++.++|.++..+|++++|+..|++.
T Consensus       311 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~ka  360 (472)
T 4g1t_A          311 KLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKE  360 (472)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHH
Confidence               13678999999999999999999999999999999999999988875

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.66  E-value=3.8e-16  Score=136.02  Aligned_cols=137  Identities=13%  Similarity=-0.031  Sum_probs=127.4

Q ss_pred             CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCC
Q 029199            3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPG   82 (197)
Q Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~   82 (197)
                      |.++...+++.+|+..|..+++.+|+++..++..|..+..                    .|++++|+++|+++++++|+
T Consensus        30 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~--------------------~g~~~~A~~~~~~al~~~p~   89 (568)
T 2vsy_A           30 ADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWT--------------------QQRHAEAAVLLQQASDAAPE   89 (568)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--------------------CCCHHHHHHHHHHHHhcCCC
Confidence            5678889999999999999999999999999999998876                    49999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 029199           83 NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWEL---HNDQDRAATYYERAVHASPEDSHVHAS  159 (197)
Q Consensus        83 ~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~---~~~~~~A~~~~~~al~~~p~~~~~~~~  159 (197)
                      ++.+++++|.++.. .|++++|++.|+++++++|+++.++.++|.++..+   + ++++|.+.|+++++.+|++...+..
T Consensus        90 ~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~  167 (568)
T 2vsy_A           90 HPGIALWLGHALED-AGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWR-ALDVLSAQVRAAVAQGVGAVEPFAF  167 (568)
T ss_dssp             CHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCT-THHHHHHHHHHHHHHTCCCSCHHHH
T ss_pred             CHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHhcCCcccChHHH
Confidence            99999999988887 99999999999999999999999999999999998   7 5999999999999999998777665


Q ss_pred             HH
Q 029199          160 YA  161 (197)
Q Consensus       160 la  161 (197)
                      ++
T Consensus       168 l~  169 (568)
T 2vsy_A          168 LS  169 (568)
T ss_dssp             TT
T ss_pred             hC
Confidence            55

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.65  E-value=1e-15  Score=106.28  Aligned_cols=106  Identities=17%  Similarity=0.225  Sum_probs=97.3

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHHcCC
Q 029199           63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGD-------GEILSQYAKLVWELHND  135 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~-------~~~~~~lg~~l~~~~~~  135 (197)
                      .|++++|+.+|+++++.+|+++.++.++|.++.. .|++++|+.+|+++++++|++       +.+++++|.++...| +
T Consensus        17 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~   94 (131)
T 1elr_A           17 KKDFDTALKHYDKAKELDPTNMTYITNQAAVYFE-KGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEE-K   94 (131)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTT-C
T ss_pred             hcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH-hccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhc-c
Confidence            4999999999999999999999999999988877 999999999999999999988       999999999999988 5


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcc
Q 029199          136 QDRAATYYERAVHASPEDSHVHASYAGFLWETEEDN  171 (197)
Q Consensus       136 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~  171 (197)
                      +++|+++|++++++.| ++..+..++.+...+++.+
T Consensus        95 ~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~  129 (131)
T 1elr_A           95 YKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKEQE  129 (131)
T ss_dssp             HHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999 6999999999988765443

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.65  E-value=1.3e-15  Score=107.58  Aligned_cols=101  Identities=16%  Similarity=0.163  Sum_probs=94.1

Q ss_pred             HhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 029199           78 EENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVH  157 (197)
Q Consensus        78 ~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~  157 (197)
                      ..+|.++..++.+|.+++. .|++++|+.+|+++++++|+++.+++++|.++...++ +++|+.+|+++++++|+++.++
T Consensus         3 ~~~~~~~~~~~~~g~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~   80 (137)
T 3q49_B            3 HMKSPSAQELKEQGNRLFV-GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQ-PEQALADCRRALELDGQSVKAH   80 (137)
T ss_dssp             ---CCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CCccccHHHHHHHHHHHHH-hCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhCchhHHHH
Confidence            4678899999999988887 9999999999999999999999999999999999885 9999999999999999999999


Q ss_pred             HHHHHHHHHcCCccccccCCCcc
Q 029199          158 ASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       158 ~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      +++|.++..+|++++|...++++
T Consensus        81 ~~l~~~~~~~~~~~~A~~~~~~a  103 (137)
T 3q49_B           81 FFLGQCQLEMESYDEAIANLQRA  103 (137)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHH
Confidence            99999999999999999888875

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.65  E-value=3.8e-16  Score=127.23  Aligned_cols=154  Identities=11%  Similarity=0.033  Sum_probs=131.6

Q ss_pred             CcchhHHH--HHHHHhhhcCcccccCCCChhhHHhhhccc----CCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHH
Q 029199            3 GTALSEEV--KVMEALWNAGFEQERGTVGQEMYLAKGLGV----GGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKM   76 (197)
Q Consensus         3 ~~~~~~~~--~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~----~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a   76 (197)
                      |.+|...+  ++.++|..++.+++.+|.+..+|..++..+    ..++.                 .+++++++++++++
T Consensus        74 ~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~-----------------~~~~~~EL~~~~~~  136 (306)
T 3dra_A           74 FNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNN-----------------DFDPYREFDILEAM  136 (306)
T ss_dssp             HHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTT-----------------CCCTHHHHHHHHHH
T ss_pred             HHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccc-----------------cCCHHHHHHHHHHH
Confidence            34455555  677777777778888888888888888877    43211                 26789999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHh
Q 029199           77 VEENPGNPLFLSNYAQFLYQSKQDLP--KAEEYYSRAILADPGDGEILSQYAKLVWELHND-----QDRAATYYERAVHA  149 (197)
Q Consensus        77 l~~~P~~~~~~~~la~~l~~~~g~~~--~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~-----~~~A~~~~~~al~~  149 (197)
                      ++.+|.+..+|.+++.++.. .+.++  +++++++++++.||.|..+|.+++.++..+++.     ++++++++++++.+
T Consensus       137 l~~~pkny~aW~~R~~vl~~-l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~  215 (306)
T 3dra_A          137 LSSDPKNHHVWSYRKWLVDT-FDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK  215 (306)
T ss_dssp             HHHCTTCHHHHHHHHHHHHH-TTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH
T ss_pred             HHhCCCCHHHHHHHHHHHHH-hcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh
Confidence            99999999999999977776 99998  999999999999999999999999998887631     89999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCccccc
Q 029199          150 SPEDSHVHASYAGFLWETEEDNDEC  174 (197)
Q Consensus       150 ~p~~~~~~~~la~~~~~~g~~~ea~  174 (197)
                      +|+|..+|+.++.++.+.|+..++.
T Consensus       216 ~p~n~SaW~y~~~ll~~~~~~~~~~  240 (306)
T 3dra_A          216 CPQNPSTWNYLLGIHERFDRSITQL  240 (306)
T ss_dssp             CSSCHHHHHHHHHHHHHTTCCGGGG
T ss_pred             CCCCccHHHHHHHHHHhcCCChHHH
Confidence            9999999999999999999977754

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.65  E-value=3.8e-16  Score=109.92  Aligned_cols=93  Identities=15%  Similarity=0.053  Sum_probs=87.6

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 029199           86 FLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLW  165 (197)
Q Consensus        86 ~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  165 (197)
                      .++.+|..+.. .|++++|+..|+++++++|+++.+|+++|.++...|+ +++|+.+|+++++++|+++.+++++|.++.
T Consensus        19 ~~~~~g~~~~~-~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~-~~~A~~~~~~al~l~P~~~~~~~~la~~~~   96 (121)
T 1hxi_A           19 NPMEEGLSMLK-LANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEK-DGLAIIALNHARMLDPKDIAVHAALAVSHT   96 (121)
T ss_dssp             CHHHHHHHHHH-TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            36778977777 9999999999999999999999999999999999885 999999999999999999999999999999


Q ss_pred             HcCCccccccCCCcc
Q 029199          166 ETEEDNDECDAPSEL  180 (197)
Q Consensus       166 ~~g~~~ea~~~~~~~  180 (197)
                      .+|++++|...+++.
T Consensus        97 ~~g~~~~A~~~~~~a  111 (121)
T 1hxi_A           97 NEHNANAALASLRAW  111 (121)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHH
Confidence            999999999888874

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.65  E-value=4.5e-17  Score=127.14  Aligned_cols=156  Identities=17%  Similarity=0.123  Sum_probs=134.9

Q ss_pred             CcchhHHHHHHHHhhhcCccccc--------CCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHH
Q 029199            3 GTALSEEVKVMEALWNAGFEQER--------GTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYK   74 (197)
Q Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~~--------~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~   74 (197)
                      |.++...+++.+|+..|..+++.        .|..+..+...|..+..                    .|++++|+++|+
T Consensus        50 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~--------------------~g~~~~A~~~~~  109 (283)
T 3edt_B           50 ALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGK--------------------RGKYKEAEPLCK  109 (283)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHT--------------------TTCHHHHHHHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHH--------------------hccHHHHHHHHH
Confidence            56677888899999999888766        35566778888877766                    499999999999


Q ss_pred             HHHHh--------CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHcCCHHH
Q 029199           75 KMVEE--------NPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILA--------DPGDGEILSQYAKLVWELHNDQDR  138 (197)
Q Consensus        75 ~al~~--------~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l--------~P~~~~~~~~lg~~l~~~~~~~~~  138 (197)
                      +++++        +|....++.++|.++.. .|++++|+.+|++++++        +|....++.++|.++...|+ +++
T Consensus       110 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~  187 (283)
T 3edt_B          110 RALEIREKVLGKFHPDVAKQLNNLALLCQN-QGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGK-YQD  187 (283)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTC-HHH
T ss_pred             HHHHHHHHHcCCCChHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC-HHH
Confidence            99998        57778899999987776 99999999999999999        78888999999999999885 999


Q ss_pred             HHHHHHHHHHh-------------------------------------------------CCCCHHHHHHHHHHHHHcCC
Q 029199          139 AATYYERAVHA-------------------------------------------------SPEDSHVHASYAGFLWETEE  169 (197)
Q Consensus       139 A~~~~~~al~~-------------------------------------------------~p~~~~~~~~la~~~~~~g~  169 (197)
                      |+.+|++++++                                                 .|..+.++..+|.++..+|+
T Consensus       188 A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  267 (283)
T 3edt_B          188 AETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGK  267 (283)
T ss_dssp             HHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC
Confidence            99999999986                                                 25566789999999999999


Q ss_pred             ccccccCCCcc
Q 029199          170 DNDECDAPSEL  180 (197)
Q Consensus       170 ~~ea~~~~~~~  180 (197)
                      +++|...+++.
T Consensus       268 ~~~A~~~~~~a  278 (283)
T 3edt_B          268 LEAAHTLEDCA  278 (283)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99998877763

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.65  E-value=4.4e-16  Score=126.86  Aligned_cols=147  Identities=8%  Similarity=0.067  Sum_probs=133.6

Q ss_pred             HHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 029199           13 MEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQ   92 (197)
Q Consensus        13 ~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~   92 (197)
                      .+|+..++.+++.+|++..+|..+|..+..++.                  .+++++++++++++..+|++..+|+.++.
T Consensus        50 ~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~------------------~~~~eeL~~~~~~L~~nPk~y~aW~~R~~  111 (306)
T 3dra_A           50 ERALHITELGINELASHYTIWIYRFNILKNLPN------------------RNLYDELDWCEEIALDNEKNYQIWNYRQL  111 (306)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTT------------------SCHHHHHHHHHHHHHHCTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCcHHHHHHHHHHHHHHHccc------------------ccHHHHHHHHHHHHHHCcccHHHHHHHHH
Confidence            579999999999999999999999999988520                  39999999999999999999999999997


Q ss_pred             HH----HHhc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhCCCCHHHHHHHHHH
Q 029199           93 FL----YQSK---QDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQD--RAATYYERAVHASPEDSHVHASYAGF  163 (197)
Q Consensus        93 ~l----~~~~---g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~--~A~~~~~~al~~~p~~~~~~~~la~~  163 (197)
                      ++    .. .   +++++++.+++++++.+|+|..+|..++.++..++. ++  +++++++++++.+|.|..+|.+++.+
T Consensus       112 iL~~~~~~-l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~-~~~~~EL~~~~~~i~~d~~N~sAW~~R~~l  189 (306)
T 3dra_A          112 IIGQIMEL-NNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDL-HNDAKELSFVDKVIDTDLKNNSAWSHRFFL  189 (306)
T ss_dssp             HHHHHHHH-TTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHh-ccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc-cChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            77    54 5   789999999999999999999999999999999886 78  99999999999999999999999999


Q ss_pred             HHHcCC------ccccccCCCc
Q 029199          164 LWETEE------DNDECDAPSE  179 (197)
Q Consensus       164 ~~~~g~------~~ea~~~~~~  179 (197)
                      +..+|+      ++++.+.+.+
T Consensus       190 l~~l~~~~~~~~~~eEl~~~~~  211 (306)
T 3dra_A          190 LFSKKHLATDNTIDEELNYVKD  211 (306)
T ss_dssp             HHSSGGGCCHHHHHHHHHHHHH
T ss_pred             HHhccccchhhhHHHHHHHHHH
Confidence            999987      6666665554

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.64  E-value=1e-16  Score=131.94  Aligned_cols=117  Identities=12%  Similarity=0.075  Sum_probs=80.2

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 029199           62 SGGDSQGVEEYYKKMVEENPGNP-----------------LFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQ  124 (197)
Q Consensus        62 ~~g~~~~A~~~~~~al~~~P~~~-----------------~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~  124 (197)
                      ..|++++|+.+|+++++++|++.                 .+|+++|.++.. +|++++|+.+|+++++++|+++.++++
T Consensus       191 ~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~-~g~~~~A~~~~~~al~~~p~~~~a~~~  269 (338)
T 2if4_A          191 KEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIK-LKRYDEAIGHCNIVLTEEEKNPKALFR  269 (338)
T ss_dssp             SSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHT-TTCCHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             hcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            36999999999999999999987                 489999977776 999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCccccccCCCcc
Q 029199          125 YAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWE-TEEDNDECDAPSEL  180 (197)
Q Consensus       125 lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~ea~~~~~~~  180 (197)
                      +|.++..+++ +++|+.+|+++++++|+++.++.+++.+... .+..+++...|.++
T Consensus       270 lg~a~~~~g~-~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~  325 (338)
T 2if4_A          270 RGKAKAELGQ-MDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGI  325 (338)
T ss_dssp             HHHHHHTTTC-HHHHHHHHHHTTC---------------------------------
T ss_pred             HHHHHHHcCC-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999885 9999999999999999999999999999554 45666677777774

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.64  E-value=4.9e-16  Score=114.70  Aligned_cols=95  Identities=16%  Similarity=0.070  Sum_probs=88.9

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Q 029199           84 PLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPG-------DGE-----ILSQYAKLVWELHNDQDRAATYYERAVHA--  149 (197)
Q Consensus        84 ~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~-------~~~-----~~~~lg~~l~~~~~~~~~A~~~~~~al~~--  149 (197)
                      +..+.+.|..++. .|++++|+.+|+++++++|+       +..     +|.|+|.++..+|+ +++|+.+|+++|++  
T Consensus        11 a~~~~~~G~~l~~-~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr-~~eAl~~~~kAL~l~n   88 (159)
T 2hr2_A           11 AYLALSDAQRQLV-AGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRS-FDEALHSADKALHYFN   88 (159)
T ss_dssp             HHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-CCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhhh
Confidence            4568899988888 99999999999999999999       544     99999999999996 99999999999999  


Q ss_pred             -----CCCCHHHH----HHHHHHHHHcCCccccccCCCcc
Q 029199          150 -----SPEDSHVH----ASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       150 -----~p~~~~~~----~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                           +|+++.+|    +++|.++..+|++++|+..|++.
T Consensus        89 ~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kA  128 (159)
T 2hr2_A           89 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKV  128 (159)
T ss_dssp             HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHH
Confidence                 99999999    99999999999999999999984

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.64  E-value=5e-16  Score=105.17  Aligned_cols=100  Identities=16%  Similarity=0.194  Sum_probs=94.4

Q ss_pred             hCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHH
Q 029199           79 ENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPE--DSHV  156 (197)
Q Consensus        79 ~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~--~~~~  156 (197)
                      ++|+++.+++.+|.+++. .|++++|+.+|+++++++|.++.+++++|.++...++ +++|+.+|+++++.+|+  ++.+
T Consensus         1 l~p~~~~~~~~~~~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~   78 (112)
T 2kck_A            1 MVDQNPEEYYLEGVLQYD-AGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLER-YEEAVDCYNYVINVIEDEYNKDV   78 (112)
T ss_dssp             CCCSSTTGGGGHHHHHHS-SCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHTSCCTTCHHH
T ss_pred             CCCCcHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCcccchHHH
Confidence            478999999999977776 9999999999999999999999999999999999885 99999999999999999  9999


Q ss_pred             HHHHHHHHHHc-CCccccccCCCcc
Q 029199          157 HASYAGFLWET-EEDNDECDAPSEL  180 (197)
Q Consensus       157 ~~~la~~~~~~-g~~~ea~~~~~~~  180 (197)
                      +.++|.++..+ |++++|...+.++
T Consensus        79 ~~~l~~~~~~~~~~~~~A~~~~~~~  103 (112)
T 2kck_A           79 WAAKADALRYIEGKEVEAEIAEARA  103 (112)
T ss_dssp             HHHHHHHHTTCSSCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            99999999999 9999999888875

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.64  E-value=2.1e-17  Score=141.26  Aligned_cols=159  Identities=9%  Similarity=-0.041  Sum_probs=128.5

Q ss_pred             HHHHHHhhhcCc----ccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHH
Q 029199           10 VKVMEALWNAGF----EQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPL   85 (197)
Q Consensus        10 ~~~~~a~~~~~~----~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~   85 (197)
                      ..+..|+..+..    .+..+|..  .|...|.....        ..|..........+++++|+..|++++..+|+.+.
T Consensus       200 ~~~e~al~~~~~ge~~~l~i~P~~--ay~~~g~~~~~--------ip~~~~l~y~~~l~~~~~A~~~~~~~~~~~~~~a~  269 (457)
T 1kt0_A          200 IGIDKALEKMQREEQCILYLGPRY--GFGEAGKPKFG--------IEPNAELIYEVTLKSFEKAKESWEMDTKEKLEQAA  269 (457)
T ss_dssp             HHHHHHHTTCCBTCEEEEEECGGG--TTCSSCBGGGT--------BCTTCCEEEEEEEEEEECCCCGGGSCHHHHHHHHH
T ss_pred             hHHHHHHHhCCCCCEEEEEECccc--ccCCCCCcccC--------CCCCCEEEEEhhhhhcccCcchhhcCHHHHHHHHH
Confidence            477888888877    55555542  22222221110        11111112222346788899999999999999999


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 029199           86 FLSNYAQFLYQSKQDLPKAEEYYSRAILADPGD---------------GEILSQYAKLVWELHNDQDRAATYYERAVHAS  150 (197)
Q Consensus        86 ~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~---------------~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~  150 (197)
                      .++++|..++. .|++++|+.+|+++++++|++               ..+++++|.++..+++ +++|+.+|+++++++
T Consensus       270 ~~~~~G~~~~~-~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~-~~~A~~~~~~al~~~  347 (457)
T 1kt0_A          270 IVKEKGTVYFK-GGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLRE-YTKAVECCDKALGLD  347 (457)
T ss_dssp             HHHHHHHHHHH-TTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHh-CCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHhcC
Confidence            99999988888 999999999999999999999               7999999999999885 999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          151 PEDSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       151 p~~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      |+++.+++++|.++..+|++++|+..|++.
T Consensus       348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~a  377 (457)
T 1kt0_A          348 SANEKGLYRRGEAQLLMNEFESAKGDFEKV  377 (457)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            999999999999999999999999998884

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.64  E-value=9.8e-17  Score=128.89  Aligned_cols=157  Identities=12%  Similarity=0.042  Sum_probs=124.4

Q ss_pred             CcchhHHHHHHHHhhhcCcccccCCCC------hhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCC-CCHHHHHHHHHH
Q 029199            3 GTALSEEVKVMEALWNAGFEQERGTVG------QEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSG-GDSQGVEEYYKK   75 (197)
Q Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~A~~~~~~   75 (197)
                      |+++.+.|++.+|+..|..+++..|..      +..+...|..+..                    . |++++|+.+|++
T Consensus        84 g~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~--------------------~lg~~~~A~~~~~~  143 (292)
T 1qqe_A           84 YKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILEN--------------------DLHDYAKAIDCYEL  143 (292)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--------------------TTCCHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH--------------------hhcCHHHHHHHHHH
Confidence            677888899999999999988877643      3456666666554                    3 999999999999


Q ss_pred             HHHhCCCC------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHHcCCHHHHHHH
Q 029199           76 MVEENPGN------PLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGE-------ILSQYAKLVWELHNDQDRAATY  142 (197)
Q Consensus        76 al~~~P~~------~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~-------~~~~lg~~l~~~~~~~~~A~~~  142 (197)
                      ++++.|.+      ..++.++|.++.. +|++++|+.+|++++++.|+++.       ++.++|.++..+| ++++|+.+
T Consensus       144 Al~~~~~~~~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~  221 (292)
T 1qqe_A          144 AGEWYAQDQSVALSNKCFIKCADLKAL-DGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAAT-DAVAAART  221 (292)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTT-CHHHHHHH
T ss_pred             HHHHHHhCCChHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcC-CHHHHHHH
Confidence            99998865      5678999988887 99999999999999999998764       6789999999988 59999999


Q ss_pred             HHHHHHhCCCCHHH-----HHHHHHHHH--HcCCccccccCCCccc
Q 029199          143 YERAVHASPEDSHV-----HASYAGFLW--ETEEDNDECDAPSELD  181 (197)
Q Consensus       143 ~~~al~~~p~~~~~-----~~~la~~~~--~~g~~~ea~~~~~~~~  181 (197)
                      |+++++++|+.+..     +..++..+.  ..+++++|+..|+++.
T Consensus       222 ~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~  267 (292)
T 1qqe_A          222 LQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM  267 (292)
T ss_dssp             HHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred             HHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence            99999999987764     445566554  4577888999888754

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.63  E-value=9.2e-16  Score=127.89  Aligned_cols=112  Identities=19%  Similarity=0.171  Sum_probs=105.9

Q ss_pred             CCCHHHHHHHHHHHHH----------------hCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 029199           63 GGDSQGVEEYYKKMVE----------------ENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYA  126 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~----------------~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg  126 (197)
                      .|++++|+++|+++++                ++|.+..+|+++|.+++. +|++++|+.+|+++++++|+++.+++++|
T Consensus       236 ~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-~g~~~~A~~~~~~al~~~p~~~~a~~~lg  314 (370)
T 1ihg_A          236 SQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLK-MSDWQGAVDSCLEALEIDPSNTKALYRRA  314 (370)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence            5999999999999999                888899999999988887 99999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccC
Q 029199          127 KLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDA  176 (197)
Q Consensus       127 ~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~  176 (197)
                      .++..+++ +++|+.+|+++++++|+++.++..++.++..+++.+++.+.
T Consensus       315 ~~~~~~g~-~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~  363 (370)
T 1ihg_A          315 QGWQGLKE-YDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA  363 (370)
T ss_dssp             HHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHccC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999885 99999999999999999999999999999999999887543

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.63  E-value=1.3e-15  Score=122.00  Aligned_cols=105  Identities=17%  Similarity=0.140  Sum_probs=96.7

Q ss_pred             CCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q 029199           27 TVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEE  106 (197)
Q Consensus        27 p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~  106 (197)
                      |.++..++..|..+..                    .|++++|+..|+++++++|+++.+++++|.++.. .|++++|+.
T Consensus         1 p~~a~~~~~~g~~~~~--------------------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~~A~~   59 (281)
T 2c2l_A            1 SPSAQELKEQGNRLFV--------------------GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK-MQQPEQALA   59 (281)
T ss_dssp             CCCHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH-TTCHHHHHH
T ss_pred             ChhHHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-hcCHHHHHH
Confidence            5567777888877666                    4999999999999999999999999999988887 999999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 029199          107 YYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPED  153 (197)
Q Consensus       107 ~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~  153 (197)
                      .|+++++++|+++.+++++|.++..+|+ +++|+.+|+++++++|++
T Consensus        60 ~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~l~p~~  105 (281)
T 2c2l_A           60 DCRRALELDGQSVKAHFFLGQCQLEMES-YDEAIANLQRAYSLAKEQ  105 (281)
T ss_dssp             HHHHHTTSCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCccc
Confidence            9999999999999999999999999885 999999999999999876

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.62  E-value=3.6e-16  Score=137.10  Aligned_cols=137  Identities=7%  Similarity=-0.058  Sum_probs=126.7

Q ss_pred             HHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCC----------HHHHHHHHHHHHHhCCC
Q 029199           13 MEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGD----------SQGVEEYYKKMVEENPG   82 (197)
Q Consensus        13 ~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~----------~~~A~~~~~~al~~~P~   82 (197)
                      ++|+..++.+++.+|.+..+|..+|..+..+                    |+          ++++++.++++++.+|+
T Consensus        46 eeal~~~~~~l~~nP~~~taW~~R~~~l~~l--------------------~~~~~~~~~~~~~~~eL~~~~~~l~~~pK  105 (567)
T 1dce_A           46 ESVLELTSQILGANPDFATLWNCRREVLQHL--------------------ETEKSPEESAALVKAELGFLESCLRVNPK  105 (567)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH--------------------HTTSCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHCchhHHHHHHHHHHHHhc--------------------ccccchhhhhhhHHHHHHHHHHHHHhCCC
Confidence            4789999999999999999999999999876                    44          89999999999999999


Q ss_pred             CHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 029199           83 NPLFLSNYAQFLYQSKQ--DLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASY  160 (197)
Q Consensus        83 ~~~~~~~la~~l~~~~g--~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  160 (197)
                      +..+|++++.++.. .+  +++++++++++++++||+|..+|.+++.++..++..+++++++++++++.+|+|..+|+++
T Consensus       106 ~y~aW~hR~w~l~~-l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r  184 (567)
T 1dce_A          106 SYGTWHHRCWLLSR-LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYR  184 (567)
T ss_dssp             CHHHHHHHHHHHHT-CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHH
T ss_pred             CHHHHHHHHHHHHH-cccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHH
Confidence            99999999977666 89  7799999999999999999999999999999988458999999999999999999999999


Q ss_pred             HHHHHHcCCc
Q 029199          161 AGFLWETEED  170 (197)
Q Consensus       161 a~~~~~~g~~  170 (197)
                      +.++..+++.
T Consensus       185 ~~ll~~l~~~  194 (567)
T 1dce_A          185 SCLLPQLHPQ  194 (567)
T ss_dssp             HHHHHHHSCC
T ss_pred             HHHHHhhccc
Confidence            9999997443

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.61  E-value=1.6e-15  Score=117.07  Aligned_cols=131  Identities=15%  Similarity=0.114  Sum_probs=113.9

Q ss_pred             ChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhcCCHHHHH
Q 029199           29 GQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNP---LFLSNYAQFLYQSKQDLPKAE  105 (197)
Q Consensus        29 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~---~~~~~la~~l~~~~g~~~~A~  105 (197)
                      +++.++..|..+..                    .|++++|+..|+++++..|+++   .+++.+|.+++. .|++++|+
T Consensus         3 ~~~~~~~~a~~~~~--------------------~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~-~~~~~~A~   61 (225)
T 2yhc_A            3 PPNEIYATAQQKLQ--------------------DGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYK-NADLPLAQ   61 (225)
T ss_dssp             CHHHHHHHHHHHHH--------------------HTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHH-TTCHHHHH
T ss_pred             CHHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHh-cCCHHHHH
Confidence            45666777766655                    4999999999999999999874   789999988888 99999999


Q ss_pred             HHHHHHHHhCCCCHH---HHHHHHHHHHHHc-----------------CCHHHHHHHHHHHHHhCCCCHHHH--------
Q 029199          106 EYYSRAILADPGDGE---ILSQYAKLVWELH-----------------NDQDRAATYYERAVHASPEDSHVH--------  157 (197)
Q Consensus       106 ~~~~~al~l~P~~~~---~~~~lg~~l~~~~-----------------~~~~~A~~~~~~al~~~p~~~~~~--------  157 (197)
                      ..|+++++++|+++.   +++.+|.++...+                 +++++|+..|+++++..|+++.++        
T Consensus        62 ~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~  141 (225)
T 2yhc_A           62 AAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVF  141 (225)
T ss_dssp             HHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHH
Confidence            999999999999975   7899999988631                 258999999999999999998665        


Q ss_pred             ---------HHHHHHHHHcCCccccccCCCcc
Q 029199          158 ---------ASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       158 ---------~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                               +.+|.++.+.|++++|+..|+++
T Consensus       142 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~  173 (225)
T 2yhc_A          142 LKDRLAKYEYSVAEYYTERGAWVAVVNRVEGM  173 (225)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence                     67899999999999999888885

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.60  E-value=5.4e-16  Score=120.96  Aligned_cols=149  Identities=16%  Similarity=0.143  Sum_probs=125.8

Q ss_pred             HHHHHHhhhcCcccccC-CCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHh--------C
Q 029199           10 VKVMEALWNAGFEQERG-TVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEE--------N   80 (197)
Q Consensus        10 ~~~~~a~~~~~~~~~~~-p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~   80 (197)
                      .-+.+|+..+......+ |..+.++...|..+..                    .|++++|+.+|++++++        +
T Consensus        22 ~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~--------------------~g~~~~A~~~~~~al~~~~~~~~~~~   81 (283)
T 3edt_B           22 PLCKQALEDLEKTSGHDHPDVATMLNILALVYRD--------------------QNKYKEAAHLLNDALAIREKTLGKDH   81 (283)
T ss_dssp             HHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH--------------------cccHHHHHHHHHHHHHHHHHHcCCcc
Confidence            34455555554443333 5667888888888766                    49999999999999988        4


Q ss_pred             CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Q 029199           81 PGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILA--------DPGDGEILSQYAKLVWELHNDQDRAATYYERAVHA---  149 (197)
Q Consensus        81 P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l--------~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~---  149 (197)
                      |....++.++|.++.. .|++++|+.+|++++++        +|....++.++|.++...|+ +++|+.+|++++++   
T Consensus        82 ~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~  159 (283)
T 3edt_B           82 PAVAATLNNLAVLYGK-RGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGK-AEEVEYYYRRALEIYAT  159 (283)
T ss_dssp             HHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHH
Confidence            6678899999977776 99999999999999998        57788999999999999885 99999999999999   


Q ss_pred             -----CCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          150 -----SPEDSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       150 -----~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                           .|....++.++|.++..+|++++|...+++.
T Consensus       160 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~  195 (283)
T 3edt_B          160 RLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEI  195 (283)
T ss_dssp             HSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             hcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence                 7778889999999999999999998888774

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.60  E-value=4.4e-15  Score=107.65  Aligned_cols=125  Identities=11%  Similarity=-0.046  Sum_probs=112.1

Q ss_pred             CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCC
Q 029199            3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPG   82 (197)
Q Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~   82 (197)
                      |.++-..+++.+|+..|..+++.+|.++.+++..|..+..                    .|++++|+.+|+++++++|+
T Consensus        20 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~--------------------~~~~~~A~~~~~~a~~~~~~   79 (166)
T 1a17_A           20 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLR--------------------TECYGYALGDATRAIELDKK   79 (166)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHHhCcc
Confidence            5667788999999999999999999999999999988776                    49999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHh
Q 029199           83 NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKL--VWELHNDQDRAATYYERAVHA  149 (197)
Q Consensus        83 ~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~--l~~~~~~~~~A~~~~~~al~~  149 (197)
                      ++.+++++|.++.. .|++++|+.+|+++++++|+++.++..++.+  +...++ +++|+.++.++..+
T Consensus        80 ~~~~~~~~a~~~~~-~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~~~~  146 (166)
T 1a17_A           80 YIKGYYRRAASNMA-LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA-FERAIAGDEHKRSV  146 (166)
T ss_dssp             CHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHH-hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH-HHHHHHcccchHHH
Confidence            99999999988777 9999999999999999999999999665554  777774 99999999987654

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.60  E-value=2.1e-16  Score=125.29  Aligned_cols=156  Identities=15%  Similarity=0.117  Sum_probs=134.1

Q ss_pred             CcchhHHHHHHHHhhhcCccccc--------CCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHH
Q 029199            3 GTALSEEVKVMEALWNAGFEQER--------GTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYK   74 (197)
Q Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~~--------~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~   74 (197)
                      |.++...+++.+|+..|..+++.        .|..+..+...|..+..                    .|++++|+.+|+
T Consensus        76 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~--------------------~g~~~~A~~~~~  135 (311)
T 3nf1_A           76 ALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGK--------------------RGKYKEAEPLCK  135 (311)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHT--------------------TTCHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH--------------------cCcHHHHHHHHH
Confidence            55677788889999988887765        35556777777777666                    499999999999


Q ss_pred             HHHHhC--------CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHcCCHHH
Q 029199           75 KMVEEN--------PGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILA--------DPGDGEILSQYAKLVWELHNDQDR  138 (197)
Q Consensus        75 ~al~~~--------P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l--------~P~~~~~~~~lg~~l~~~~~~~~~  138 (197)
                      +++++.        |....++.++|.++.. .|++++|+.+|++++++        +|..+.++.++|.++...|+ +++
T Consensus       136 ~a~~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~  213 (311)
T 3nf1_A          136 RALEIREKVLGKDHPDVAKQLNNLALLCQN-QGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGK-FKQ  213 (311)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTC-HHH
T ss_pred             HHHHHHHHhcCCCChHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCC-HHH
Confidence            999984        6667889999977776 99999999999999999        78888999999999999885 999


Q ss_pred             HHHHHHHHHHh-------------------------------------------------CCCCHHHHHHHHHHHHHcCC
Q 029199          139 AATYYERAVHA-------------------------------------------------SPEDSHVHASYAGFLWETEE  169 (197)
Q Consensus       139 A~~~~~~al~~-------------------------------------------------~p~~~~~~~~la~~~~~~g~  169 (197)
                      |+.+|++++++                                                 +|..+.++.++|.++..+|+
T Consensus       214 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  293 (311)
T 3nf1_A          214 AETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGK  293 (311)
T ss_dssp             HHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCC
Confidence            99999999984                                                 46777889999999999999


Q ss_pred             ccccccCCCcc
Q 029199          170 DNDECDAPSEL  180 (197)
Q Consensus       170 ~~ea~~~~~~~  180 (197)
                      +++|...+++.
T Consensus       294 ~~~A~~~~~~a  304 (311)
T 3nf1_A          294 FEAAETLEEAA  304 (311)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99998888763

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.59  E-value=2.7e-16  Score=130.04  Aligned_cols=157  Identities=10%  Similarity=0.029  Sum_probs=133.4

Q ss_pred             CCcchhHHHHHHHHhhhcCccccc------CCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHH
Q 029199            2 AGTALSEEVKVMEALWNAGFEQER------GTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKK   75 (197)
Q Consensus         2 ~~~~~~~~~~~~~a~~~~~~~~~~------~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~   75 (197)
                      +|+.+...|++.+|+..|..+++.      .+..+.++...|.....                    .|++++|+.+|++
T Consensus       109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~--------------------~~~~~~A~~~~~~  168 (383)
T 3ulq_A          109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYY--------------------MKQTYFSMDYARQ  168 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHH--------------------TTCHHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH--------------------cCCHHHHHHHHHH
Confidence            467778888999999999888775      22345778888877766                    4999999999999


Q ss_pred             HHHhCCCC-------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHcCCHHHHHHH
Q 029199           76 MVEENPGN-------PLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDG------EILSQYAKLVWELHNDQDRAATY  142 (197)
Q Consensus        76 al~~~P~~-------~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~------~~~~~lg~~l~~~~~~~~~A~~~  142 (197)
                      ++++.+..       ..++.++|.++.. .|++++|+.+|++++++.|...      .++.++|.++...|+ +++|+.+
T Consensus       169 al~~~~~~~~~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~-~~~A~~~  246 (383)
T 3ulq_A          169 AYEIYKEHEAYNIRLLQCHSLFATNFLD-LKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQ-YEDAIPY  246 (383)
T ss_dssp             HHHHHHTCSTTHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHH
T ss_pred             HHHHHHhCccchHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCC-HHHHHHH
Confidence            99985443       4589999988777 9999999999999999865443      589999999999884 9999999


Q ss_pred             HHHHHH-----hC-CCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          143 YERAVH-----AS-PEDSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       143 ~~~al~-----~~-p~~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      |+++++     .+ |..+.++.++|.++..+|++++|...+++.
T Consensus       247 ~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  290 (383)
T 3ulq_A          247 FKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKG  290 (383)
T ss_dssp             HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            999999     56 888999999999999999999998888774

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.59  E-value=1.7e-16  Score=125.84  Aligned_cols=156  Identities=15%  Similarity=0.108  Sum_probs=136.6

Q ss_pred             CcchhHHHHHHHHhhhcCcccc--------cCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHH
Q 029199            3 GTALSEEVKVMEALWNAGFEQE--------RGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYK   74 (197)
Q Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~--------~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~   74 (197)
                      |.++...|++.+|+..|..+++        ..|..+.++...|..+..                    .|++++|+.+|+
T Consensus        34 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~--------------------~g~~~~A~~~~~   93 (311)
T 3nf1_A           34 VIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRD--------------------QNKYKDAANLLN   93 (311)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHH--------------------TTCHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH--------------------CCCHHHHHHHHH
Confidence            5567788899999999998887        466777888888887766                    499999999999


Q ss_pred             HHHHh--------CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHcCCHHH
Q 029199           75 KMVEE--------NPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILAD--------PGDGEILSQYAKLVWELHNDQDR  138 (197)
Q Consensus        75 ~al~~--------~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~--------P~~~~~~~~lg~~l~~~~~~~~~  138 (197)
                      +++++        +|....++.++|.++.. .|++++|+.+|++++++.        |....++.++|.++...|+ +++
T Consensus        94 ~al~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~  171 (311)
T 3nf1_A           94 DALAIREKTLGKDHPAVAATLNNLAVLYGK-RGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGK-YEE  171 (311)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTC-HHH
T ss_pred             HHHHHHHHHhCCCChHHHHHHHHHHHHHHH-cCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCC-HHH
Confidence            99988        46678899999977776 999999999999999884        6677889999999999885 999


Q ss_pred             HHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          139 AATYYERAVHA--------SPEDSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       139 A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      |+++|++++++        +|....++..+|.++..+|++++|...+++.
T Consensus       172 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  221 (311)
T 3nf1_A          172 VEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEI  221 (311)
T ss_dssp             HHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            99999999998        7778889999999999999999998888875

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.59  E-value=3.8e-16  Score=118.09  Aligned_cols=124  Identities=7%  Similarity=-0.096  Sum_probs=104.5

Q ss_pred             CCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH---------------
Q 029199           55 SGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDG---------------  119 (197)
Q Consensus        55 ~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~---------------  119 (197)
                      ..+......|+++++.+.++......+.....+..+|..++. .|++++|+..|++++++.|.++               
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~   87 (198)
T 2fbn_A            9 HHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFK-KNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIE   87 (198)
T ss_dssp             -------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHH
T ss_pred             chhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHH
Confidence            333444446888999888888888888889999999988887 9999999999999999999998               


Q ss_pred             -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          120 -EILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       120 -~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                       .++.++|.++..+++ +++|+.+|+++++++|+++.+++++|.++..+|++++|...|++.
T Consensus        88 ~~~~~~la~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a  148 (198)
T 2fbn_A           88 ISCNLNLATCYNKNKD-YPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKA  148 (198)
T ss_dssp             HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence             899999999999885 999999999999999999999999999999999999999988884

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.59  E-value=6.3e-15  Score=116.14  Aligned_cols=150  Identities=15%  Similarity=0.125  Sum_probs=88.5

Q ss_pred             CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCC-CCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCC
Q 029199            3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGG-RGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENP   81 (197)
Q Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P   81 (197)
                      |.++...+++.+|+..|..+.+  |+++..++..|..+.. .|                 ..+++++|+++|+++++.+ 
T Consensus        13 g~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~-----------------~~~~~~~A~~~~~~a~~~~-   72 (273)
T 1ouv_A           13 GAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQG-----------------VEKNLKKAASFYAKACDLN-   72 (273)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSS-----------------SCCCHHHHHHHHHHHHHTT-
T ss_pred             HHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCC-----------------cCCCHHHHHHHHHHHHHCC-
Confidence            4556667778888888877665  6777777777766543 00                 0255666666666666553 


Q ss_pred             CCHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhCCCC
Q 029199           82 GNPLFLSNYAQFLYQS----KQDLPKAEEYYSRAILADPGDGEILSQYAKLVWE----LHNDQDRAATYYERAVHASPED  153 (197)
Q Consensus        82 ~~~~~~~~la~~l~~~----~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~----~~~~~~~A~~~~~~al~~~p~~  153 (197)
                       ++.+++++|.+ +..    .+++++|+.+|+++++.+  ++.+++++|.++..    .+ ++++|+.+|+++++.+  +
T Consensus        73 -~~~a~~~lg~~-~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~-~~~~A~~~~~~a~~~~--~  145 (273)
T 1ouv_A           73 -YSNGCHLLGNL-YYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTR-DFKKAVEYFTKACDLN--D  145 (273)
T ss_dssp             -CHHHHHHHHHH-HHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCC-CHHHHHHHHHHHHHTT--C
T ss_pred             -CHHHHHHHHHH-HhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCccc-CHHHHHHHHHHHHhcC--c
Confidence             55566666633 323    456666666666665542  55666666655555    44 3566666666665543  4


Q ss_pred             HHHHHHHHHHHHH----cCCccccccCCCc
Q 029199          154 SHVHASYAGFLWE----TEEDNDECDAPSE  179 (197)
Q Consensus       154 ~~~~~~la~~~~~----~g~~~ea~~~~~~  179 (197)
                      +.+++++|.++..    .+++++|...+++
T Consensus       146 ~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~  175 (273)
T 1ouv_A          146 GDGCTILGSLYDAGRGTPKDLKKALASYDK  175 (273)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence            5555666666655    5555555555554

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.59  E-value=1.3e-15  Score=112.27  Aligned_cols=108  Identities=8%  Similarity=0.003  Sum_probs=88.7

Q ss_pred             cchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCC
Q 029199            4 TALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGN   83 (197)
Q Consensus         4 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~   83 (197)
                      .-..+.+++++|+..+..+++.+|++++.|+..|..+...+.+..+          ....+.+++|+.+|+++++++|++
T Consensus        10 ~~~~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g----------~~al~~~~eAi~~le~AL~ldP~~   79 (158)
T 1zu2_A           10 TEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSI----------SDAKQMIQEAITKFEEALLIDPKK   79 (158)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCH----------HHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             cHHHHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchh----------hhhHhHHHHHHHHHHHHHHhCcCc
Confidence            3467889999999999999999999999999999988765321100          000023679999999999999999


Q ss_pred             HHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHhCCCCHHHH
Q 029199           84 PLFLSNYAQFLYQSK-----------QDLPKAEEYYSRAILADPGDGEIL  122 (197)
Q Consensus        84 ~~~~~~la~~l~~~~-----------g~~~~A~~~~~~al~l~P~~~~~~  122 (197)
                      ..+|+++|.++.. +           |++++|+.+|++|++++|++..++
T Consensus        80 ~~A~~~LG~ay~~-lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~  128 (158)
T 1zu2_A           80 DEAVWCIGNAYTS-FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYL  128 (158)
T ss_dssp             HHHHHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHHH-hcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHH
Confidence            9999999988887 5           489999999999999999986443

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.59  E-value=2e-14  Score=99.22  Aligned_cols=102  Identities=16%  Similarity=0.160  Sum_probs=91.3

Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 029199           68 GVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAV  147 (197)
Q Consensus        68 ~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al  147 (197)
                      .|+..|+++++.+|+++.+|+++|.++.. .|++++|+.+|+++++++|+++.+++++|.++...|+ +++|+.+|++++
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al   80 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAE-HEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGD-RAGARQAWESGL   80 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHH
Confidence            58899999999999999999999988877 9999999999999999999999999999999999885 999999999999


Q ss_pred             HhCCC--CHHHHHHHHHHHHHcCCcc
Q 029199          148 HASPE--DSHVHASYAGFLWETEEDN  171 (197)
Q Consensus       148 ~~~p~--~~~~~~~la~~~~~~g~~~  171 (197)
                      +++|+  +......+...+..+++..
T Consensus        81 ~~~~~~~~~~~~~~l~~~l~~l~~~~  106 (115)
T 2kat_A           81 AAAQSRGDQQVVKELQVFLRRLARED  106 (115)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred             HhccccccHHHHHHHHHHHHHhcccc
Confidence            99874  5667777777777665443

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.59  E-value=6.5e-15  Score=120.97  Aligned_cols=136  Identities=10%  Similarity=-0.078  Sum_probs=122.5

Q ss_pred             HHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 029199           12 VMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYA   91 (197)
Q Consensus        12 ~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la   91 (197)
                      +.+++..++.++..+|.++.+|..+++.+..++.                  ..+++++.++.++++++|.|..+|...+
T Consensus        90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~------------------~~~~~EL~~~~k~l~~dprNy~AW~~R~  151 (331)
T 3dss_A           90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPE------------------PNWARELELCARFLEADERNFHCWDYRR  151 (331)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSS------------------CCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCc------------------ccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            6889999999999999999999999999988631                  2689999999999999999999999999


Q ss_pred             HHHHHhcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--------------cCCHHHHHHHHHHHHHhCCCCHHH
Q 029199           92 QFLYQSKQD-LPKAEEYYSRAILADPGDGEILSQYAKLVWEL--------------HNDQDRAATYYERAVHASPEDSHV  156 (197)
Q Consensus        92 ~~l~~~~g~-~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~--------------~~~~~~A~~~~~~al~~~p~~~~~  156 (197)
                      .++.. .|. +++++++++++++.+|.|..+|.+++.++..+              +. ++++++++.+++.++|+|..+
T Consensus       152 ~vl~~-l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~-~~eEle~~~~ai~~~P~d~Sa  229 (331)
T 3dss_A          152 FVAAQ-AAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV-LLKELELVQNAFFTDPNDQSA  229 (331)
T ss_dssp             HHHHH-TTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHH-HHHHHHHHHHHHHHSTTCHHH
T ss_pred             HHHHH-hCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHH-HHHHHHHHHHHHHhCCCCHHH
Confidence            77766 888 69999999999999999999999999999887              33 889999999999999999999


Q ss_pred             HHHHHHHHHHc
Q 029199          157 HASYAGFLWET  167 (197)
Q Consensus       157 ~~~la~~~~~~  167 (197)
                      |+.+..++...
T Consensus       230 W~Y~r~ll~~~  240 (331)
T 3dss_A          230 WFYHRWLLGAG  240 (331)
T ss_dssp             HHHHHHHHHSS
T ss_pred             HHHHHHHHHhc
Confidence            98666666555

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.58  E-value=5e-15  Score=121.67  Aligned_cols=145  Identities=7%  Similarity=-0.068  Sum_probs=124.5

Q ss_pred             HHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 029199           13 MEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQ   92 (197)
Q Consensus        13 ~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~   92 (197)
                      .+|+..++.+++.+|.+..+|..++..+..++...    +|.      .....+++++.++++++..+|++..+|+.++.
T Consensus        47 ~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~----~~~------~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~w  116 (331)
T 3dss_A           47 ESVLELTSQILGANPDFATLWNCRREVLQHLETEK----SPE------ESAALVKAELGFLESCLRVNPKSYGTWHHRCW  116 (331)
T ss_dssp             HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHS----CHH------HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccc----cch------hhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            46899999999999999999999999987652100    000      00012789999999999999999999999997


Q ss_pred             HHHHhcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 029199           93 FLYQSKQ--DLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETE  168 (197)
Q Consensus        93 ~l~~~~g--~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  168 (197)
                      ++.. .+  .+++++.+++++++++|.|..+|...+.++...+..++++++++.+++..+|+|..+|.+++.++..++
T Consensus       117 lL~~-l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~  193 (331)
T 3dss_A          117 LLSR-LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLH  193 (331)
T ss_dssp             HHHH-CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHS
T ss_pred             HHhc-cCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhh
Confidence            7776 78  489999999999999999999999999999998864689999999999999999999999999999883

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.58  E-value=2.5e-15  Score=129.75  Aligned_cols=146  Identities=14%  Similarity=0.107  Sum_probs=130.7

Q ss_pred             HHhhhcCcccc-cCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCH-HHHHHHH
Q 029199           14 EALWNAGFEQE-RGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNP-LFLSNYA   91 (197)
Q Consensus        14 ~a~~~~~~~~~-~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~-~~~~~la   91 (197)
                      +|+..|..+++ ..|+++.+|+..+.....                    .|++++|.+.|+++++++|+++ .+|.+++
T Consensus       304 ~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~--------------------~g~~~~A~~~~~~al~~~p~~~~~~~~~~~  363 (530)
T 2ooe_A          304 EAANIYERAISTLLKKNMLLYFAYADYEES--------------------RMKYEKVHSIYNRLLAIEDIDPTLVYIQYM  363 (530)
T ss_dssp             HHHHHHHHHTTTTCSSCHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHSSSSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcccHHHHHHHHHHHHh--------------------cCCHHHHHHHHHHHhCccccCchHHHHHHH
Confidence            89999999997 799999999999988766                    3899999999999999999996 6999999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcc
Q 029199           92 QFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDN  171 (197)
Q Consensus        92 ~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~  171 (197)
                      .++.. .|++++|+..|+++++..|.+..++...+.+.+...+++++|..+|+++++.+|+++.+|.+++.++..+|+.+
T Consensus       364 ~~~~~-~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~  442 (530)
T 2ooe_A          364 KFARR-AEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDN  442 (530)
T ss_dssp             HHHHH-HHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHH
T ss_pred             HHHHH-hcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHh
Confidence            87776 89999999999999999999888888777664433446999999999999999999999999999999999999


Q ss_pred             ccccCCCcc
Q 029199          172 DECDAPSEL  180 (197)
Q Consensus       172 ea~~~~~~~  180 (197)
                      +|...|++.
T Consensus       443 ~Ar~~~~~a  451 (530)
T 2ooe_A          443 NTRVLFERV  451 (530)
T ss_dssp             HHHHHHHHH
T ss_pred             hHHHHHHHH
Confidence            999888885

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.58  E-value=1.5e-15  Score=125.48  Aligned_cols=137  Identities=9%  Similarity=-0.024  Sum_probs=128.1

Q ss_pred             HHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCC-CHHHHHHHHHHHHHhCCCCHHHHHH
Q 029199           11 KVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGG-DSQGVEEYYKKMVEENPGNPLFLSN   89 (197)
Q Consensus        11 ~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~A~~~~~~al~~~P~~~~~~~~   89 (197)
                      +..+|+..++.+++.+|.+..+|..+|..+..+                    | .++++++.+++++..+|++..+|+.
T Consensus        69 ~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l--------------------~~~l~eEL~~~~~~L~~nPKny~aW~h  128 (349)
T 3q7a_A           69 KSERALELTEIIVRMNPAHYTVWQYRFSLLTSL--------------------NKSLEDELRLMNEFAVQNLKSYQVWHH  128 (349)
T ss_dssp             CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--------------------TCCHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred             CCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHh--------------------hhhHHHHHHHHHHHHHhCCCcHHHHHH
Confidence            446899999999999999999999999999875                    5 6999999999999999999999999


Q ss_pred             HHHHHHHhc-C-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHhCCCCHHHHHH
Q 029199           90 YAQFLYQSK-Q-DLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQD--------RAATYYERAVHASPEDSHVHAS  159 (197)
Q Consensus        90 la~~l~~~~-g-~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~--------~A~~~~~~al~~~p~~~~~~~~  159 (197)
                      ++.++.. . + ++++++.+++++++++|+|..+|..++.++..+++ ++        +++++++++++.+|.|..+|.+
T Consensus       129 R~wlL~~-l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~-~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~  206 (349)
T 3q7a_A          129 RLLLLDR-ISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFST-LGRISEAQWGSELDWCNEMLRVDGRNNSAWGW  206 (349)
T ss_dssp             HHHHHHH-HCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHH-TTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHH-hcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc-ccccchhhHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            9977777 6 7 89999999999999999999999999999999886 66        9999999999999999999999


Q ss_pred             HHHHHHHcCC
Q 029199          160 YAGFLWETEE  169 (197)
Q Consensus       160 la~~~~~~g~  169 (197)
                      ++.++..+++
T Consensus       207 R~~lL~~l~~  216 (349)
T 3q7a_A          207 RWYLRVSRPG  216 (349)
T ss_dssp             HHHHHTTSTT
T ss_pred             HHHHHHhccc
Confidence            9999999987

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.57  E-value=9.3e-15  Score=106.93  Aligned_cols=96  Identities=10%  Similarity=0.061  Sum_probs=90.0

Q ss_pred             CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 029199           83 NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILA------------------DPGDGEILSQYAKLVWELHNDQDRAATYYE  144 (197)
Q Consensus        83 ~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l------------------~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~  144 (197)
                      .+..+...|..++. .|++++|+..|++++.+                  +|.++.+++++|.++..+|+ +++|+.+++
T Consensus        10 ~a~~~~~~G~~~~~-~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~-~~~A~~~~~   87 (162)
T 3rkv_A           10 SVEALRQKGNELFV-QKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGD-LHEAEETSS   87 (162)
T ss_dssp             HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTC-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCc-HHHHHHHHH
Confidence            35678899988888 99999999999999999                  78888999999999999995 999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          145 RAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       145 ~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      ++++++|+++.+++++|.++..+|++++|...|++.
T Consensus        88 ~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a  123 (162)
T 3rkv_A           88 EVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLL  123 (162)
T ss_dssp             HHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHH
Confidence            999999999999999999999999999999999884

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.56  E-value=6.4e-14  Score=91.88  Aligned_cols=85  Identities=20%  Similarity=0.358  Sum_probs=79.5

Q ss_pred             CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 029199           82 GNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYA  161 (197)
Q Consensus        82 ~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  161 (197)
                      .++.+++.+|.++.. .|++++|+.+|+++++++|+++.+++++|.++...++ +++|+.+|+++++++|+++.++.++|
T Consensus         7 ~~~~~~~~la~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~p~~~~~~~~l~   84 (91)
T 1na3_A            7 NSAEAWYNLGNAYYK-QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGD-YDEAIEYYQKALELDPNNAEAKQNLG   84 (91)
T ss_dssp             HHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHH-ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh-HHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            467889999988877 9999999999999999999999999999999999885 99999999999999999999999999


Q ss_pred             HHHHHcC
Q 029199          162 GFLWETE  168 (197)
Q Consensus       162 ~~~~~~g  168 (197)
                      .++..+|
T Consensus        85 ~~~~~~g   91 (91)
T 1na3_A           85 NAKQKQG   91 (91)
T ss_dssp             HHHHHHC
T ss_pred             HHHHhcC
Confidence            9998765

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.56  E-value=1.4e-14  Score=116.03  Aligned_cols=152  Identities=14%  Similarity=0.025  Sum_probs=120.0

Q ss_pred             hhHHHHHHHHhhhcCcccccCCCChh------hHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHh
Q 029199            6 LSEEVKVMEALWNAGFEQERGTVGQE------MYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEE   79 (197)
Q Consensus         6 ~~~~~~~~~a~~~~~~~~~~~p~~~~------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~   79 (197)
                      +-..+++.+|+..+...++..+..+.      .++..|.....                    .|++++|+.+|++++++
T Consensus        85 ~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~A~~~~~~al~~  144 (293)
T 2qfc_A           85 LCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLK--------------------KVDYEYCILELKKLLNQ  144 (293)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHT--------------------SSCHHHHHHHHHHHHTT
T ss_pred             HHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhc--------------------CCCHHHHHHHHHHHHHH
Confidence            34556778888888777666665442      23333333332                    48999999999999987


Q ss_pred             CCCC------HHHHHHHHHHHHHhcCCHHHHHHHHHHHH---HhCCCCH----HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 029199           80 NPGN------PLFLSNYAQFLYQSKQDLPKAEEYYSRAI---LADPGDG----EILSQYAKLVWELHNDQDRAATYYERA  146 (197)
Q Consensus        80 ~P~~------~~~~~~la~~l~~~~g~~~~A~~~~~~al---~l~P~~~----~~~~~lg~~l~~~~~~~~~A~~~~~~a  146 (197)
                      .+..      ..+++++|.++.. .|++++|+.+|++++   +..|+++    .+++++|.++..+|+ +++|+.+|+++
T Consensus       145 ~~~~~~~~~~~~~~~~lg~~y~~-~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~-y~~Al~~~~ka  222 (293)
T 2qfc_A          145 QLTGIDVYQNLYIENAIANIYAE-NGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSR-YEESLYQVNKA  222 (293)
T ss_dssp             CCCSSCTTHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHH
T ss_pred             HhcCCchHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhh-HHHHHHHHHHH
Confidence            6554      6689999988777 999999999999999   5567754    689999999999885 99999999999


Q ss_pred             HHhCCC------CHHHHHHHHHHHHHcCCcccc-ccCCCc
Q 029199          147 VHASPE------DSHVHASYAGFLWETEEDNDE-CDAPSE  179 (197)
Q Consensus       147 l~~~p~------~~~~~~~la~~~~~~g~~~ea-~~~~~~  179 (197)
                      +++.++      -..+++++|.++..+|++++| ...+++
T Consensus       223 l~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~  262 (293)
T 2qfc_A          223 IEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKK  262 (293)
T ss_dssp             HHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence            988643      278899999999999999999 555655

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.55  E-value=4.7e-14  Score=95.97  Aligned_cols=96  Identities=16%  Similarity=0.015  Sum_probs=90.2

Q ss_pred             CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 029199           83 NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAG  162 (197)
Q Consensus        83 ~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  162 (197)
                      .+..++.+|..+.. .|++++|+..|++++..+|+++.++.++|.++...++ +++|+.+++++++.+|+++.+++++|.
T Consensus         3 ~~~~~~~~~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~a~   80 (118)
T 1elw_A            3 QVNELKEKGNKALS-VGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGD-YQKAYEDGCKTVDLKPDWGKGYSRKAA   80 (118)
T ss_dssp             HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHH-cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence            45678899988887 9999999999999999999999999999999999885 999999999999999999999999999


Q ss_pred             HHHHcCCccccccCCCcc
Q 029199          163 FLWETEEDNDECDAPSEL  180 (197)
Q Consensus       163 ~~~~~g~~~ea~~~~~~~  180 (197)
                      ++..+|++++|...+++.
T Consensus        81 ~~~~~~~~~~A~~~~~~~   98 (118)
T 1elw_A           81 ALEFLNRFEEAKRTYEEG   98 (118)
T ss_dssp             HHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHH
Confidence            999999999999888874

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.55  E-value=1.3e-14  Score=101.19  Aligned_cols=110  Identities=15%  Similarity=0.055  Sum_probs=102.3

Q ss_pred             CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCC
Q 029199            3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPG   82 (197)
Q Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~   82 (197)
                      |.++-..+++.+|+..|..+++.+|.++.+++..|..+..                    .|++++|+++|+++++++|+
T Consensus        23 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~--------------------~~~~~~A~~~~~~a~~~~~~   82 (133)
T 2lni_A           23 GNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTK--------------------LLEFQLALKDCEECIQLEPT   82 (133)
T ss_dssp             HHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTT--------------------TTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH--------------------hccHHHHHHHHHHHHHhCCC
Confidence            5667788899999999999999999999999999988776                    49999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 029199           83 NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELH  133 (197)
Q Consensus        83 ~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~  133 (197)
                      ++.+++++|.++.. .|++++|+.+|+++++++|.++.++..++.++...+
T Consensus        83 ~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~  132 (133)
T 2lni_A           83 FIKGYTRKAAALEA-MKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY  132 (133)
T ss_dssp             CHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred             chHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence            99999999988877 999999999999999999999999999999988765

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.54  E-value=1.8e-15  Score=130.05  Aligned_cols=131  Identities=12%  Similarity=-0.028  Sum_probs=116.9

Q ss_pred             CCcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCC
Q 029199            2 AGTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENP   81 (197)
Q Consensus         2 ~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P   81 (197)
                      .|.++-+.+++.+|+..|.++++.+|.++..+...|..+..                    .|++++|+++|+++++++|
T Consensus        12 lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~--------------------~g~~~~A~~~~~~al~l~p   71 (477)
T 1wao_1           12 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLR--------------------TECYGYALGDATRAIELDK   71 (477)
T ss_dssp             SSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHSCT
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH--------------------hcCHHHHHHHHHHHHHhCC
Confidence            58889999999999999999999999999999999999877                    4999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHHcCCHHHHHHHHH-----------HHHH
Q 029199           82 GNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKL--VWELHNDQDRAATYYE-----------RAVH  148 (197)
Q Consensus        82 ~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~--l~~~~~~~~~A~~~~~-----------~al~  148 (197)
                      +++.+++++|.++.. +|++++|+.+|+++++++|+++.++.+++.+  +...++ +++|++.++           ++++
T Consensus        72 ~~~~~~~~lg~~~~~-~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~al~  149 (477)
T 1wao_1           72 KYIKGYYRRAASNMA-LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA-FERAIAGDEHKRSVVDSLDIESMT  149 (477)
T ss_dssp             TCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHH-HCCC------CCSTTTCCTTSSCC
T ss_pred             CCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH-HHHHhccccccchhHhhhhhhhcc
Confidence            999999999988887 9999999999999999999999999999988  788785 999999999           8888


Q ss_pred             hCCCCH
Q 029199          149 ASPEDS  154 (197)
Q Consensus       149 ~~p~~~  154 (197)
                      ++|+..
T Consensus       150 ~~~~~~  155 (477)
T 1wao_1          150 IEDEYS  155 (477)
T ss_dssp             CCTTCC
T ss_pred             cccccc
Confidence            887643

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.54  E-value=2.7e-14  Score=112.51  Aligned_cols=144  Identities=17%  Similarity=0.120  Sum_probs=79.6

Q ss_pred             HHHHHHHhhhcCcccccCCCChhhHHhhhcccCC-CCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 029199            9 EVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGG-RGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFL   87 (197)
Q Consensus         9 ~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~   87 (197)
                      .+++.+|+..|..+.+.+  ++..++..|..+.. .|                 ..+++++|+++|+++++.+  ++.++
T Consensus        55 ~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~-----------------~~~~~~~A~~~~~~a~~~~--~~~a~  113 (273)
T 1ouv_A           55 EKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQG-----------------VSQNTNKALQYYSKACDLK--YAEGC  113 (273)
T ss_dssp             CCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSS-----------------SCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred             CCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCC-----------------cccCHHHHHHHHHHHHHcC--CccHH
Confidence            566677777776666553  66666666655432 00                 0255666666666665552  55555


Q ss_pred             HHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 029199           88 SNYAQFLYQS----KQDLPKAEEYYSRAILADPGDGEILSQYAKLVWE----LHNDQDRAATYYERAVHASPEDSHVHAS  159 (197)
Q Consensus        88 ~~la~~l~~~----~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~  159 (197)
                      +++|.++. .    .+++++|+.+|+++++.+  ++.+++++|.++..    .+ ++++|+.+|+++++.  +++.++++
T Consensus       114 ~~lg~~~~-~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~-~~~~A~~~~~~a~~~--~~~~a~~~  187 (273)
T 1ouv_A          114 ASLGGIYH-DGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPK-DLKKALASYDKACDL--KDSPGCFN  187 (273)
T ss_dssp             HHHHHHHH-HCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCC-CHHHHHHHHHHHHHT--TCHHHHHH
T ss_pred             HHHHHHHH-cCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHHHC--CCHHHHHH
Confidence            55663332 3    455666666666665544  45555555555554    34 355666666655554  23555555


Q ss_pred             HHHHHHH----cCCccccccCCCc
Q 029199          160 YAGFLWE----TEEDNDECDAPSE  179 (197)
Q Consensus       160 la~~~~~----~g~~~ea~~~~~~  179 (197)
                      +|.++..    .+++++|...+++
T Consensus       188 lg~~~~~g~~~~~~~~~A~~~~~~  211 (273)
T 1ouv_A          188 AGNMYHHGEGATKNFKEALARYSK  211 (273)
T ss_dssp             HHHHHHHTCSSCCCHHHHHHHHHH
T ss_pred             HHHHHHcCCCCCccHHHHHHHHHH
Confidence            6665555    5555555555544

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.54  E-value=1.5e-14  Score=111.09  Aligned_cols=155  Identities=9%  Similarity=-0.030  Sum_probs=128.5

Q ss_pred             CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCC
Q 029199            3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPG   82 (197)
Q Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~   82 (197)
                      |.++...+++.+|+..|.++.  +.+++..++..|..+.. ++.                ..++++|+++|++++  ++.
T Consensus        25 g~~~~~~~~~~~A~~~~~~a~--~~g~~~a~~~lg~~y~~-~g~----------------~~~~~~A~~~~~~A~--~~g   83 (212)
T 3rjv_A           25 ADTWVSSGDYQKAEYWAQKAA--AQGDGDALALLAQLKIR-NPQ----------------QADYPQARQLAEKAV--EAG   83 (212)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHH--HTTCHHHHHHHHHHTTS-STT----------------SCCHHHHHHHHHHHH--HTT
T ss_pred             HHHHhcCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHc-CCC----------------CCCHHHHHHHHHHHH--HCC
Confidence            567778889999999998876  45788888988888665 211                248999999999995  467


Q ss_pred             CHHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhCCCC
Q 029199           83 NPLFLSNYAQFLYQ---SKQDLPKAEEYYSRAILADP--GDGEILSQYAKLVWE----LHNDQDRAATYYERAVHASPED  153 (197)
Q Consensus        83 ~~~~~~~la~~l~~---~~g~~~~A~~~~~~al~l~P--~~~~~~~~lg~~l~~----~~~~~~~A~~~~~~al~~~p~~  153 (197)
                      ++.++++||.++..   ..+++++|+.+|+++++..|  +++.+++++|.+|..    .+ ++++|+.+|++++++ |.+
T Consensus        84 ~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~-d~~~A~~~~~~A~~~-~~~  161 (212)
T 3rjv_A           84 SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPE-DDVKASEYFKGSSSL-SRT  161 (212)
T ss_dssp             CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSC-CHHHHHHHHHHHHHT-SCT
T ss_pred             CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHHHc-CCC
Confidence            99999999955542   15799999999999999988  469999999999888    55 599999999999998 778


Q ss_pred             HHHHHHHHHHHHHc-C-----CccccccCCCcc
Q 029199          154 SHVHASYAGFLWET-E-----EDNDECDAPSEL  180 (197)
Q Consensus       154 ~~~~~~la~~~~~~-g-----~~~ea~~~~~~~  180 (197)
                      +.+++++|.+|... |     ++++|...|++.
T Consensus       162 ~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A  194 (212)
T 3rjv_A          162 GYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVS  194 (212)
T ss_dssp             THHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH
Confidence            88999999999875 3     788888888774

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.53  E-value=3.4e-14  Score=98.31  Aligned_cols=101  Identities=17%  Similarity=0.153  Sum_probs=93.7

Q ss_pred             HhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 029199           78 EENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVH  157 (197)
Q Consensus        78 ~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~  157 (197)
                      +.+|.++.++..+|..++. .|++++|+..|+++++.+|+++.++.++|.++...+ ++++|+.++++++..+|+++.++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~   83 (131)
T 2vyi_A            6 EEDSAEAERLKTEGNEQMK-VENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLG-NYAGAVQDCERAICIDPAYSKAY   83 (131)
T ss_dssp             -CHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             hcchhhhHHHHHHHHHHHH-ccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhh-chHHHHHHHHHHHhcCccCHHHH
Confidence            4567778899999988887 999999999999999999999999999999999988 49999999999999999999999


Q ss_pred             HHHHHHHHHcCCccccccCCCcc
Q 029199          158 ASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       158 ~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      +.+|.++..+|++++|...+++.
T Consensus        84 ~~~~~~~~~~~~~~~A~~~~~~~  106 (131)
T 2vyi_A           84 GRMGLALSSLNKHVEAVAYYKKA  106 (131)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHH
Confidence            99999999999999999888875

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.53  E-value=1.2e-14  Score=116.30  Aligned_cols=151  Identities=13%  Similarity=0.011  Sum_probs=119.1

Q ss_pred             hHHHHHHHHhhhcCcccccCCCChhhH----H--hhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhC
Q 029199            7 SEEVKVMEALWNAGFEQERGTVGQEMY----L--AKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEEN   80 (197)
Q Consensus         7 ~~~~~~~~a~~~~~~~~~~~p~~~~~~----~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~   80 (197)
                      -..+++.+|+..+...++..+.++...    +  ..|.....                    .|++++|+.+|++++++.
T Consensus        86 ~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~--------------------~~~~~~Ai~~~~~al~~~  145 (293)
T 3u3w_A           86 CKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLK--------------------KVDYEYCILELKKLLNQQ  145 (293)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTT--------------------SSCHHHHHHHHHHHHHTC
T ss_pred             HHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHc--------------------ccCHHHHHHHHHHHHHHh
Confidence            345677888888888887777666521    2  23333322                    489999999999999975


Q ss_pred             CCC------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 029199           81 PGN------PLFLSNYAQFLYQSKQDLPKAEEYYSRAILA-------DPGDGEILSQYAKLVWELHNDQDRAATYYERAV  147 (197)
Q Consensus        81 P~~------~~~~~~la~~l~~~~g~~~~A~~~~~~al~l-------~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al  147 (197)
                      +..      ..+++++|.++.. .|++++|+.+|+++++.       .|..+.+++++|.++..+|+ +++|+.++++++
T Consensus       146 ~~~~~~~~~~~~~~~lg~~y~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~-y~~A~~~~~~al  223 (293)
T 3u3w_A          146 LTGIDVYQNLYIENAIANIYAE-NGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSR-YEESLYQVNKAI  223 (293)
T ss_dssp             CCCSCTTHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHH
T ss_pred             cccccHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHH
Confidence            443      3378999977777 99999999999999953       23345688999999999885 999999999999


Q ss_pred             HhCCCC------HHHHHHHHHHHHHcCC-ccccccCCCc
Q 029199          148 HASPED------SHVHASYAGFLWETEE-DNDECDAPSE  179 (197)
Q Consensus       148 ~~~p~~------~~~~~~la~~~~~~g~-~~ea~~~~~~  179 (197)
                      ++.+..      +.+++++|.++..+|+ +++|...+++
T Consensus       224 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~  262 (293)
T 3u3w_A          224 EISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKK  262 (293)
T ss_dssp             HHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence            987554      7899999999999996 5898877776

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.53  E-value=3.9e-14  Score=100.66  Aligned_cols=101  Identities=16%  Similarity=0.064  Sum_probs=94.6

Q ss_pred             HhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 029199           78 EENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGD---GEILSQYAKLVWELHNDQDRAATYYERAVHASPEDS  154 (197)
Q Consensus        78 ~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~---~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~  154 (197)
                      ..+|.+...++.+|..++. .|++++|+.+|+++++++|++   +.++.++|.++...+ ++++|+.+|+++++++|+++
T Consensus        22 ~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~~~~~   99 (148)
T 2dba_A           22 TPGASSVEQLRKEGNELFK-CGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLE-DYDKAETEASKAIEKDGGDV   99 (148)
T ss_dssp             CTTCCCHHHHHHHHHHHHT-TTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHTSCCH
T ss_pred             ccchHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHc-cHHHHHHHHHHHHhhCccCH
Confidence            4578899999999977776 999999999999999999998   999999999999988 49999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCccccccCCCcc
Q 029199          155 HVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       155 ~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      .+++++|.++..+|++++|...+++.
T Consensus       100 ~~~~~~a~~~~~~~~~~~A~~~~~~a  125 (148)
T 2dba_A          100 KALYRRSQALEKLGRLDQAVLDLQRC  125 (148)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            99999999999999999999888875

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.53  E-value=9.9e-14  Score=95.13  Aligned_cols=100  Identities=20%  Similarity=0.384  Sum_probs=90.5

Q ss_pred             hCCCC-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 029199           79 ENPGN-PLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVH  157 (197)
Q Consensus        79 ~~P~~-~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~  157 (197)
                      .+|.. ..+++.+|.++.. .|++++|+..|+++++.+|+++.++..+|.++...++ +++|+.+|+++++.+|+++.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~   80 (125)
T 1na0_A            3 MDPGNSAEAWYNLGNAYYK-QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGD-YDEAIEYYQKALELDPNNAEAW   80 (125)
T ss_dssp             ----CHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CCccccHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHhCCccHHHH
Confidence            46666 7889999988777 9999999999999999999999999999999999884 9999999999999999999999


Q ss_pred             HHHHHHHHHcCCccccccCCCcc
Q 029199          158 ASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       158 ~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      ..+|.++...|++++|...++++
T Consensus        81 ~~la~~~~~~~~~~~A~~~~~~~  103 (125)
T 1na0_A           81 YNLGNAYYKQGDYDEAIEYYQKA  103 (125)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHH
Confidence            99999999999999999888874

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.52  E-value=2e-15  Score=124.94  Aligned_cols=156  Identities=13%  Similarity=0.097  Sum_probs=123.8

Q ss_pred             CcchhHHHHHHHHhhhcCcccccCCCCh----hhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHH
Q 029199            3 GTALSEEVKVMEALWNAGFEQERGTVGQ----EMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVE   78 (197)
Q Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~----~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~   78 (197)
                      |..+-..|++.+|+..|..+++..|.++    .+++..|..+...                    |++++|+.+|+++++
T Consensus        55 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~--------------------g~~~~A~~~~~~al~  114 (411)
T 4a1s_A           55 GERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYL--------------------GDYNKAMQYHKHDLT  114 (411)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHH--------------------TCHHHHHHHHHHHHH
T ss_pred             HHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHC--------------------CCHHHHHHHHHHHHH
Confidence            4566778899999999999999999987    4677777776653                    888888888888888


Q ss_pred             h------CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHcCC-----------
Q 029199           79 E------NPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILA------DPGDGEILSQYAKLVWELHND-----------  135 (197)
Q Consensus        79 ~------~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l------~P~~~~~~~~lg~~l~~~~~~-----------  135 (197)
                      +      +|....++..+|.++.. .|++++|+.+|++++++      .|....++.++|.++...| +           
T Consensus       115 ~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~~~~~~~~~  192 (411)
T 4a1s_A          115 LAKSMNDRLGEAKSSGNLGNTLKV-MGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKG-KHLGQRNPGKFG  192 (411)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH-HHHHHHSTTCCC
T ss_pred             HHHHccCchHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcC-cccccccchhhh
Confidence            7      57777788888877766 88888888888888888      5666778888888888877 6           


Q ss_pred             ------HHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          136 ------QDRAATYYERAVHAS------PEDSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       136 ------~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                            +++|+++|++++++.      |....++.++|.++..+|++++|...+++.
T Consensus       193 ~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  249 (411)
T 4a1s_A          193 DDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQER  249 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence                  788888888887763      334457888888888888888887777664

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.51  E-value=6.8e-14  Score=111.93  Aligned_cols=98  Identities=16%  Similarity=0.170  Sum_probs=93.4

Q ss_pred             CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 029199           81 PGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASY  160 (197)
Q Consensus        81 P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  160 (197)
                      |+++..++.+|..++. .|++++|+..|+++++++|+++.+++++|.++..+|+ +++|+..|+++++++|+++.+++++
T Consensus         1 p~~a~~~~~~g~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~l   78 (281)
T 2c2l_A            1 SPSAQELKEQGNRLFV-GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQ-PEQALADCRRALELDGQSVKAHFFL   78 (281)
T ss_dssp             CCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHTTSCTTCHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            6788999999988887 9999999999999999999999999999999999885 9999999999999999999999999


Q ss_pred             HHHHHHcCCccccccCCCcc
Q 029199          161 AGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       161 a~~~~~~g~~~ea~~~~~~~  180 (197)
                      |.++..+|++++|...|++.
T Consensus        79 g~~~~~~g~~~~A~~~~~~a   98 (281)
T 2c2l_A           79 GQCQLEMESYDEAIANLQRA   98 (281)
T ss_dssp             HHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHH
Confidence            99999999999999888874

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.51  E-value=1.4e-15  Score=125.08  Aligned_cols=132  Identities=14%  Similarity=0.054  Sum_probs=80.6

Q ss_pred             CcchhHHHHHHHHhhhcCcccccCCCCh-----------------hhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCC
Q 029199            3 GTALSEEVKVMEALWNAGFEQERGTVGQ-----------------EMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGD   65 (197)
Q Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~-----------------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~   65 (197)
                      |+++-..+++.+|+..|..+++..|.++                 .+++..|..+..                    .|+
T Consensus       186 g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~--------------------~g~  245 (338)
T 2if4_A          186 GNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIK--------------------LKR  245 (338)
T ss_dssp             HHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHT--------------------TTC
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHH--------------------cCC
Confidence            5666677888999999999999999877                 478888888766                    499


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 029199           66 SQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYER  145 (197)
Q Consensus        66 ~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~  145 (197)
                      +++|+.+|+++++++|++..+|+++|.++.. +|++++|+.+|+++++++|+++.++.+++.+.....+..+++...|.+
T Consensus       246 ~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~-~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~  324 (338)
T 2if4_A          246 YDEAIGHCNIVLTEEEKNPKALFRRGKAKAE-LGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKG  324 (338)
T ss_dssp             CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-TTCHHHHHHHHHHTTC--------------------------------
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999987776 999999999999999999999999999998866656568899999999


Q ss_pred             HHHhCCCCHH
Q 029199          146 AVHASPEDSH  155 (197)
Q Consensus       146 al~~~p~~~~  155 (197)
                      ++...|+++.
T Consensus       325 ~l~~~p~~~~  334 (338)
T 2if4_A          325 IFKGKDEGGA  334 (338)
T ss_dssp             ----------
T ss_pred             hhCCCCCCCC
Confidence            9999998764

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.50  E-value=6.9e-14  Score=97.62  Aligned_cols=94  Identities=9%  Similarity=0.019  Sum_probs=87.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHH
Q 029199           85 LFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDG---EILSQYAKLVWELHNDQDRAATYYERAVHASPED---SHVHA  158 (197)
Q Consensus        85 ~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~---~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~---~~~~~  158 (197)
                      .+++.+|..++. .|++++|+..|+++++.+|+++   .+++.+|.+++..| ++++|+.+|+++++.+|++   +.+++
T Consensus         3 ~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~~~   80 (129)
T 2xev_A            3 RTAYNVAFDALK-NGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATR-NFQLAEAQFRDLVSRYPTHDKAAGGLL   80 (129)
T ss_dssp             CCHHHHHHHHHH-TTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTSTTHHHHHH
T ss_pred             HHHHHHHHHHHH-hCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHCCCCcccHHHHH
Confidence            357788988887 9999999999999999999999   89999999999988 4999999999999999999   89999


Q ss_pred             HHHHHHHHcCCccccccCCCcc
Q 029199          159 SYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       159 ~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      .+|.++..+|++++|...++++
T Consensus        81 ~la~~~~~~g~~~~A~~~~~~~  102 (129)
T 2xev_A           81 KLGLSQYGEGKNTEAQQTLQQV  102 (129)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHH
Confidence            9999999999999999888885

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.50  E-value=3.3e-14  Score=117.47  Aligned_cols=148  Identities=11%  Similarity=0.034  Sum_probs=132.1

Q ss_pred             CcchhHHH-HHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCC-CHHHHHHHHHHHHHhC
Q 029199            3 GTALSEEV-KVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGG-DSQGVEEYYKKMVEEN   80 (197)
Q Consensus         3 ~~~~~~~~-~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~A~~~~~~al~~~   80 (197)
                      |.++...+ .+.+++..++.+++.+|.+..+|..+++.+..+                   .+ +++++++++.++++.+
T Consensus        95 ~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l-------------------~~~~~~~EL~~~~k~L~~d  155 (349)
T 3q7a_A           95 FSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRI-------------------SPQDPVSEIEYIHGSLLPD  155 (349)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH-------------------CCSCCHHHHHHHHHHTSSC
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh-------------------cCCChHHHHHHHHHHHHhC
Confidence            45566666 488999999999999999999999999998874                   13 6789999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC------HHHHHHHHHHH
Q 029199           81 PGNPLFLSNYAQFLYQSKQDLP--------KAEEYYSRAILADPGDGEILSQYAKLVWELHND------QDRAATYYERA  146 (197)
Q Consensus        81 P~~~~~~~~la~~l~~~~g~~~--------~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~------~~~A~~~~~~a  146 (197)
                      |++..+|..++.++.. .+.++        +++++++++++.+|.|..+|.+++.++..+++.      ++++++++.++
T Consensus       156 pkNy~AW~~R~wvl~~-l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~a  234 (349)
T 3q7a_A          156 PKNYHTWAYLHWLYSH-FSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKS  234 (349)
T ss_dssp             TTCHHHHHHHHHHHHH-HHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHH-hccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHH
Confidence            9999999999966665 77777        999999999999999999999999998887742      68999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHHcCCc
Q 029199          147 VHASPEDSHVHASYAGFLWETEED  170 (197)
Q Consensus       147 l~~~p~~~~~~~~la~~~~~~g~~  170 (197)
                      +.++|+|..+|+.+..++...|+.
T Consensus       235 I~~~P~n~SaW~Ylr~Ll~~~~~~  258 (349)
T 3q7a_A          235 IHLIPHNVSAWNYLRGFLKHFSLP  258 (349)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred             HHhCCCCHHHHHHHHHHHHhcCCC
Confidence            999999999999999999998875

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.50  E-value=4.3e-15  Score=121.90  Aligned_cols=147  Identities=11%  Similarity=-0.033  Sum_probs=123.1

Q ss_pred             HHHHhhhcCccccc------CCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHH
Q 029199           12 VMEALWNAGFEQER------GTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPL   85 (197)
Q Consensus        12 ~~~a~~~~~~~~~~------~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~   85 (197)
                      +.+|+..+..+++.      .|..+..+...|..+..                    .|++++|+++|++++++.|....
T Consensus       163 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~--------------------~g~~~~A~~~~~~al~~~~~~~~  222 (406)
T 3sf4_A          163 LQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYL--------------------LGNFRDAVIAHEQRLLIAKEFGD  222 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--------------------HTBHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH--------------------ccCHHHHHHHHHHHHHHHHhcCC
Confidence            88888887766554      33344566677766655                    39999999999999998776544


Q ss_pred             ------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 029199           86 ------FLSNYAQFLYQSKQDLPKAEEYYSRAILADPGD------GEILSQYAKLVWELHNDQDRAATYYERAVHASPED  153 (197)
Q Consensus        86 ------~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~------~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~  153 (197)
                            ++.++|.++.. .|++++|+.+|++++++.|..      +.++.++|.++...| ++++|+.+|++++++.+..
T Consensus       223 ~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~~~~~  300 (406)
T 3sf4_A          223 KAAERRAYSNLGNAYIF-LGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQ-DYEKAIDYHLKHLAIAQEL  300 (406)
T ss_dssp             HHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHhc
Confidence                  89999988877 999999999999999998876      789999999999988 4999999999999986544


Q ss_pred             ------HHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          154 ------SHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       154 ------~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                            ..++..+|.++..+|++++|...+++.
T Consensus       301 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  333 (406)
T 3sf4_A          301 NDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH  333 (406)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence                  678999999999999999998888874

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.49  E-value=3.3e-15  Score=120.72  Aligned_cols=155  Identities=14%  Similarity=0.091  Sum_probs=121.9

Q ss_pred             CcchhHHHHHHHHhhhcCcccccCCCC------hhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHH
Q 029199            3 GTALSEEVKVMEALWNAGFEQERGTVG------QEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKM   76 (197)
Q Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a   76 (197)
                      |+++...+++.+|+..|..+.+..+..      ...+...|..+..                    .|++++|+.+|+++
T Consensus        43 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~--------------------~g~~~~A~~~~~~A  102 (307)
T 2ifu_A           43 AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKD--------------------LQRMPEAVQYIEKA  102 (307)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--------------------TTCGGGGHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--------------------CCCHHHHHHHHHHH
Confidence            456677778888888887777665432      3455566665554                    48999999999999


Q ss_pred             HHhCCCC------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHH
Q 029199           77 VEENPGN------PLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGD------GEILSQYAKLVWELHNDQDRAATYYE  144 (197)
Q Consensus        77 l~~~P~~------~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~------~~~~~~lg~~l~~~~~~~~~A~~~~~  144 (197)
                      +++.+..      ..++.++|.++ .. |++++|+.+|++++++.|..      ..++.++|.++..+|+ +++|+.+|+
T Consensus       103 l~l~~~~g~~~~~a~~~~~lg~~~-~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~  179 (307)
T 2ifu_A          103 SVMYVENGTPDTAAMALDRAGKLM-EP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQK-FDEAAASLQ  179 (307)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHH-TT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHH-Hc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCC-HHHHHHHHH
Confidence            9885432      46788899554 54 99999999999999998754      5789999999999885 999999999


Q ss_pred             HHHHhCCCC------HHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          145 RAVHASPED------SHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       145 ~al~~~p~~------~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      +++++.|++      ...+.++|.++..+|++++|...|++.
T Consensus       180 ~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a  221 (307)
T 2ifu_A          180 KEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRES  221 (307)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            999987654      347889999999999999998877774

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.49  E-value=5.1e-14  Score=121.50  Aligned_cols=152  Identities=12%  Similarity=0.111  Sum_probs=128.0

Q ss_pred             HHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHH-------HHHHHHHHHHH-hCCCCHH
Q 029199           14 EALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQ-------GVEEYYKKMVE-ENPGNPL   85 (197)
Q Consensus        14 ~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-------~A~~~~~~al~-~~P~~~~   85 (197)
                      .++..|..+++..|.++.+|+..|..+.....             .+...|+++       +|++.|+++++ ++|++..
T Consensus       256 ~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~-------------~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~  322 (530)
T 2ooe_A          256 RVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSK-------------LLAEKGDMNNAKLFSDEAANIYERAISTLLKKNML  322 (530)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-------------HHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhch-------------hhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHH
Confidence            55677888888899999999999987653100             000026766       99999999997 8999999


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-
Q 029199           86 FLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDG-EILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGF-  163 (197)
Q Consensus        86 ~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~-~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~-  163 (197)
                      +|..++.++.. .|++++|+..|+++++++|.++ .+|.+++.++...|+ +++|++.|++|++..|.+...+...+.+ 
T Consensus       323 l~~~~~~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~Al~~~~~~~~~~~~~a~~~  400 (530)
T 2ooe_A          323 LYFAYADYEES-RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEG-IKSGRMIFKKAREDARTRHHVYVTAALME  400 (530)
T ss_dssp             HHHHHHHHHHH-TTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHTCTTCCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHh-cCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcC-HHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence            99999977776 9999999999999999999996 699999999998885 9999999999999999888888877766 


Q ss_pred             HHHcCCccccccCCCcc
Q 029199          164 LWETEEDNDECDAPSEL  180 (197)
Q Consensus       164 ~~~~g~~~ea~~~~~~~  180 (197)
                      +...|+.++|...|++.
T Consensus       401 ~~~~~~~~~A~~~~e~a  417 (530)
T 2ooe_A          401 YYCSKDKSVAFKIFELG  417 (530)
T ss_dssp             HHHTCCHHHHHHHHHHH
T ss_pred             HHHcCChhHHHHHHHHH
Confidence            44689999999888874

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.49  E-value=8.1e-14  Score=96.51  Aligned_cols=98  Identities=17%  Similarity=0.223  Sum_probs=90.6

Q ss_pred             CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------
Q 029199           81 PGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPED-------  153 (197)
Q Consensus        81 P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~-------  153 (197)
                      |..+..++.+|.+++. .|++++|+.+|+++++.+|+++.+++++|.++...++ +++|+.+|++++.+.|++       
T Consensus         1 ~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~   78 (131)
T 1elr_A            1 GKQALKEKELGNDAYK-KKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGD-YNKCRELCEKAIEVGRENREDYRQI   78 (131)
T ss_dssp             CHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred             ChHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhcc-HHHHHHHHHHHHhhccccchhHHHH
Confidence            3456788999988877 9999999999999999999999999999999999885 999999999999999887       


Q ss_pred             HHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          154 SHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       154 ~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      +.+++++|.++..+|++++|...+++.
T Consensus        79 ~~~~~~la~~~~~~~~~~~A~~~~~~~  105 (131)
T 1elr_A           79 AKAYARIGNSYFKEEKYKDAIHFYNKS  105 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            999999999999999999999888875

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.49  E-value=5.1e-15  Score=122.37  Aligned_cols=157  Identities=10%  Similarity=-0.114  Sum_probs=130.2

Q ss_pred             CCcchhHHHHHHHHhhhcCcccccCC------CChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHH
Q 029199            2 AGTALSEEVKVMEALWNAGFEQERGT------VGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKK   75 (197)
Q Consensus         2 ~~~~~~~~~~~~~a~~~~~~~~~~~p------~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~   75 (197)
                      +|+.+...|++.+|+..|..+++..+      ..+.++...|.....                    .|++++|+.++++
T Consensus       107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~--------------------~~~~~~A~~~~~~  166 (378)
T 3q15_A          107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYH--------------------MKQTHVSMYHILQ  166 (378)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHH--------------------TTCHHHHHHHHHH
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHH--------------------cCCcHHHHHHHHH
Confidence            36667778889999999888776532      245667777777665                    4999999999999


Q ss_pred             HHHhCCC-------CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHHcCCHHHHHHH
Q 029199           76 MVEENPG-------NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADP------GDGEILSQYAKLVWELHNDQDRAATY  142 (197)
Q Consensus        76 al~~~P~-------~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P------~~~~~~~~lg~~l~~~~~~~~~A~~~  142 (197)
                      ++++.+.       ...+++++|.++.. .|++++|+.+|++++++.+      ....++.++|.++...|+ +++|+.+
T Consensus       167 al~~~~~~~~~~~~~~~~~~~lg~~y~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~-~~~A~~~  244 (378)
T 3q15_A          167 ALDIYQNHPLYSIRTIQSLFVIAGNYDD-FKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGD-DQMAVEH  244 (378)
T ss_dssp             HHHHHHTSTTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-HHHHHHH
T ss_pred             HHHHHHhCCCchhhHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC-HHHHHHH
Confidence            9987553       24578899988777 9999999999999999743      234688999999999885 9999999


Q ss_pred             HHHHHH-----hCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          143 YERAVH-----ASPEDSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       143 ~~~al~-----~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      |+++++     .+|..+.++.++|.++..+|++++|...+++.
T Consensus       245 ~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  287 (378)
T 3q15_A          245 FQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEG  287 (378)
T ss_dssp             HHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            999999     78888999999999999999999998777764

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.47  E-value=7.3e-15  Score=120.51  Aligned_cols=155  Identities=13%  Similarity=0.047  Sum_probs=98.8

Q ss_pred             CcchhHHHHHHHHhhhcCcccccCCCCh----hhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHH
Q 029199            3 GTALSEEVKVMEALWNAGFEQERGTVGQ----EMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVE   78 (197)
Q Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~----~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~   78 (197)
                      |.++-..|++.+|+..|..+++..|.++    .+++..|......                    |++++|+.+|++++.
T Consensus        16 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~--------------------g~~~~A~~~~~~al~   75 (406)
T 3sf4_A           16 GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYL--------------------HDYAKALEYHHHDLT   75 (406)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHh--------------------cCHHHHHHHHHHHHH
Confidence            6677788999999999999999999985    4666777666554                    666666666666665


Q ss_pred             h------CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHcCC-----------
Q 029199           79 E------NPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGD------GEILSQYAKLVWELHND-----------  135 (197)
Q Consensus        79 ~------~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~------~~~~~~lg~~l~~~~~~-----------  135 (197)
                      +      .|....++.++|.++.. .|++++|+.+|++++++.|..      +.++.++|.++...| +           
T Consensus        76 ~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~~~~~~~~~  153 (406)
T 3sf4_A           76 LARTIGDQLGEAKASGNLGNTLKV-LGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKG-KSFGCPGPQDVG  153 (406)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH-HTCC-------C
T ss_pred             HHHhccccHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcC-Ccccccccchhh
Confidence            5      33345556666655554 666666666666666655432      335666666666655 4           


Q ss_pred             ---------HHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCccccccCCCc
Q 029199          136 ---------QDRAATYYERAVHA------SPEDSHVHASYAGFLWETEEDNDECDAPSE  179 (197)
Q Consensus       136 ---------~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~ea~~~~~~  179 (197)
                               +++|+.+|++++.+      .|....++.++|.++..+|++++|...+++
T Consensus       154 ~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  212 (406)
T 3sf4_A          154 EFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQ  212 (406)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHH
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence                     56666666666554      233344556666666666666666555554

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.47  E-value=7.4e-15  Score=116.71  Aligned_cols=157  Identities=13%  Similarity=0.026  Sum_probs=115.0

Q ss_pred             CCcchhHHHHHHHHhhhcCcccccCCCCh----hhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHH
Q 029199            2 AGTALSEEVKVMEALWNAGFEQERGTVGQ----EMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMV   77 (197)
Q Consensus         2 ~~~~~~~~~~~~~a~~~~~~~~~~~p~~~----~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al   77 (197)
                      .|..+-..|++.+|+..|..+++..|.++    .++...|.....                    .|++++|++++++++
T Consensus        11 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~--------------------~g~~~~A~~~~~~al   70 (338)
T 3ro2_A           11 EGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFY--------------------LHDYAKALEYHHHDL   70 (338)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHH
Confidence            36677888999999999999999999985    556667766655                    377888888888877


Q ss_pred             Hh------CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHcCC----------
Q 029199           78 EE------NPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGD------GEILSQYAKLVWELHND----------  135 (197)
Q Consensus        78 ~~------~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~------~~~~~~lg~~l~~~~~~----------  135 (197)
                      ++      .|....++..+|.++.. .|++++|+..|++++++.|..      ..++.++|.++...| +          
T Consensus        71 ~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~  148 (338)
T 3ro2_A           71 TLARTIGDQLGEAKASGNLGNTLKV-LGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKG-KSFGCPGPQDT  148 (338)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH-HTSSSSSCC--
T ss_pred             HHhhcccccHHHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcC-cccccchhhhh
Confidence            76      44556677777866666 788888888888887775543      237777777777766 5          


Q ss_pred             ----------HHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          136 ----------QDRAATYYERAVHA------SPEDSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       136 ----------~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                                +++|+.++++++.+      .|....++.++|.++..+|++++|...+++.
T Consensus       149 ~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  209 (338)
T 3ro2_A          149 GEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQR  209 (338)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence                      67777777777765      2333456777777777778777777666653

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.47  E-value=2.8e-14  Score=106.78  Aligned_cols=150  Identities=9%  Similarity=-0.011  Sum_probs=117.8

Q ss_pred             HHHHHHHHhhhcCcccccCC-CChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHH------hC
Q 029199            8 EEVKVMEALWNAGFEQERGT-VGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVE------EN   80 (197)
Q Consensus         8 ~~~~~~~a~~~~~~~~~~~p-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~------~~   80 (197)
                      ..|++.+|...+.... .+| ..+.++...|.....                    .|++++|+.+|+++++      ..
T Consensus         4 ~~g~~~~A~~~~~~~~-~~~~~~~~~~~~l~~~~~~--------------------~g~~~~A~~~~~~al~~~~~~~~~   62 (203)
T 3gw4_A            4 EAHDYALAERQAQALL-AHPATASGARFMLGYVYAF--------------------MDRFDEARASFQALQQQAQKSGDH   62 (203)
T ss_dssp             ---CHHHHHHHHHHHH-TSTTTHHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHHHHTTCCH
T ss_pred             ccccHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHH--------------------hCcHHHHHHHHHHHHHHHHHcCCc
Confidence            4677888888222222 244 567788888877665                    4999999999999999      45


Q ss_pred             CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCCC----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--
Q 029199           81 PGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILA---DPGD----GEILSQYAKLVWELHNDQDRAATYYERAVHASP--  151 (197)
Q Consensus        81 P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l---~P~~----~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p--  151 (197)
                      |....++.++|.++.. .|++++|+.+|++++++   .|++    ..++.++|.++...|+ +++|+.++++++++.+  
T Consensus        63 ~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~~~~  140 (203)
T 3gw4_A           63 TAEHRALHQVGMVERM-AGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGD-LAGARQEYEKSLVYAQQA  140 (203)
T ss_dssp             HHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHhc
Confidence            5667889999977777 99999999999999998   4533    5679999999999885 9999999999997642  


Q ss_pred             CCH----HHHHHHHHHHHHcCCccccccCCCcc
Q 029199          152 EDS----HVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       152 ~~~----~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      .++    .++.++|.++..+|++++|...+++.
T Consensus       141 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  173 (203)
T 3gw4_A          141 DDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRA  173 (203)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence            233    34689999999999999998877764

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.46  E-value=6.2e-13  Score=90.06  Aligned_cols=90  Identities=18%  Similarity=0.205  Sum_probs=76.5

Q ss_pred             hCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHH
Q 029199           79 ENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPE--DSHV  156 (197)
Q Consensus        79 ~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~--~~~~  156 (197)
                      .+|+++.+|+++|.+++. .|++++|+.+|+++++++|+++.+++++|.++..+|+ +++|+++|++++++.|.  +...
T Consensus         2 ~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~-~~~A~~~~~~al~l~~~~~~~~~   79 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLK-HDNASRALALFEELVETDPDYVGTYYHLGKLYERLDR-TDDAIDTYAQGIEVAREEGTQKD   79 (100)
T ss_dssp             ---CCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHSCHHH
T ss_pred             CCccCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhhhcCCchhH
Confidence            579999999999988887 9999999999999999999999999999999999885 99999999999999764  5666


Q ss_pred             HHHHHHHHHHcCCc
Q 029199          157 HASYAGFLWETEED  170 (197)
Q Consensus       157 ~~~la~~~~~~g~~  170 (197)
                      ...+..++...+..
T Consensus        80 ~~~l~~~l~~~~~~   93 (100)
T 3ma5_A           80 LSELQDAKLKAEGL   93 (100)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcccc
Confidence            66777776655443

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.44  E-value=4.3e-15  Score=122.95  Aligned_cols=156  Identities=11%  Similarity=0.001  Sum_probs=131.6

Q ss_pred             CcchhHHHHHHHHhhhcCccccc------CCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHH
Q 029199            3 GTALSEEVKVMEALWNAGFEQER------GTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKM   76 (197)
Q Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~~------~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a   76 (197)
                      |.++...|++.+|+..|..+++.      .|..+.++...|..+..                    .|++++|+.+|+++
T Consensus        93 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~--------------------~g~~~~A~~~~~~a  152 (411)
T 4a1s_A           93 GNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKV--------------------MGRFDEAAICCERH  152 (411)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHH--------------------CCCHHHHHHHHHHH
Confidence            55677788889999988887766      56677888888887766                    49999999999999


Q ss_pred             HHh------CCCCHHHHHHHHHHHHHhcCC-----------------HHHHHHHHHHHHHhC------CCCHHHHHHHHH
Q 029199           77 VEE------NPGNPLFLSNYAQFLYQSKQD-----------------LPKAEEYYSRAILAD------PGDGEILSQYAK  127 (197)
Q Consensus        77 l~~------~P~~~~~~~~la~~l~~~~g~-----------------~~~A~~~~~~al~l~------P~~~~~~~~lg~  127 (197)
                      +++      .|....++.++|.++.. .|+                 +++|+.+|++++++.      |....++.++|.
T Consensus       153 l~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~  231 (411)
T 4a1s_A          153 LTLARQLGDRLSEGRALYNLGNVYHA-KGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGN  231 (411)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHHH-HHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhhchHHHHHHHHHHHHHHHH-cCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            998      67778899999988777 899                 999999999998874      445568999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHcCCccccccCCCcc
Q 029199          128 LVWELHNDQDRAATYYERAVHASPEDSH------VHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       128 ~l~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      ++...|+ +++|+.+|++++++.|....      ++.++|.++..+|++++|...+++.
T Consensus       232 ~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  289 (411)
T 4a1s_A          232 TYYLLGD-FQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT  289 (411)
T ss_dssp             HHHHTTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHcCC-hHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence            9999884 99999999999998775443      8899999999999999998888774

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.43  E-value=2.4e-14  Score=118.30  Aligned_cols=154  Identities=11%  Similarity=-0.029  Sum_probs=118.0

Q ss_pred             CcchhHHHHHHHHhhhcCcccccCCCC-------hhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHH
Q 029199            3 GTALSEEVKVMEALWNAGFEQERGTVG-------QEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKK   75 (197)
Q Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~   75 (197)
                      |.++...+++.+|+..+..+++..+..       +.++...|..+..                    .|++++|+.+|++
T Consensus       150 g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~--------------------~g~~~~A~~~~~~  209 (383)
T 3ulq_A          150 SESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLD--------------------LKQYEDAISHFQK  209 (383)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHH--------------------TTCHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHH--------------------hcCHHHHHHHHHH
Confidence            566777888888888888877764443       3466667766665                    4999999999999


Q ss_pred             HHHhCCCCH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----hC-CCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 029199           76 MVEENPGNP------LFLSNYAQFLYQSKQDLPKAEEYYSRAIL-----AD-PGDGEILSQYAKLVWELHNDQDRAATYY  143 (197)
Q Consensus        76 al~~~P~~~------~~~~~la~~l~~~~g~~~~A~~~~~~al~-----l~-P~~~~~~~~lg~~l~~~~~~~~~A~~~~  143 (197)
                      ++++.|...      .++.++|.++.. +|++++|+.+|+++++     .+ |..+.++.++|.++...|+ +++|+.++
T Consensus       210 al~~~~~~~~~~~~~~~~~~lg~~y~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~  287 (383)
T 3ulq_A          210 AYSMAEAEKQPQLMGRTLYNIGLCKNS-QSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGK-IDKAHEYH  287 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTC-HHHHHHHH
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCC-HHHHHHHH
Confidence            999865443      589999988877 9999999999999999     57 8889999999999999885 99999999


Q ss_pred             HHHHHhC-----CCCHHHHHHHHHHHHHcCC---ccccccCCC
Q 029199          144 ERAVHAS-----PEDSHVHASYAGFLWETEE---DNDECDAPS  178 (197)
Q Consensus       144 ~~al~~~-----p~~~~~~~~la~~~~~~g~---~~ea~~~~~  178 (197)
                      ++++++.     |.....+..++.++...|+   ++++...++
T Consensus       288 ~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~  330 (383)
T 3ulq_A          288 SKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLE  330 (383)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            9999884     3322333455555555555   444444333

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.43  E-value=3.8e-13  Score=108.02  Aligned_cols=140  Identities=13%  Similarity=-0.037  Sum_probs=116.6

Q ss_pred             cchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCC
Q 029199            4 TALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGN   83 (197)
Q Consensus         4 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~   83 (197)
                      .+|.++|++.+|...|......+|.+. .++.+|+....                    .+++++|+.+|+++++..+..
T Consensus       110 ~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~--------------------~~r~~dA~~~l~~a~~~~d~~  168 (282)
T 4f3v_A          110 ACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGA--------------------AERWTDVIDQVKSAGKWPDKF  168 (282)
T ss_dssp             HHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHH--------------------TTCHHHHHHHHTTGGGCSCHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHH--------------------cCCHHHHHHHHHHhhccCCcc
Confidence            468899999999999999999999888 88888887655                    499999999999887653221


Q ss_pred             --HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 029199           84 --PLFLSNYAQFLYQSKQDLPKAEEYYSRAILAD--PG-DGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHA  158 (197)
Q Consensus        84 --~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~--P~-~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~  158 (197)
                        ..+++++|.++.. +|++++|+.+|++++...  |. .+++++++|.++..+|+ .++|..+|++++..+|+ +.++.
T Consensus       169 ~~~~a~~~LG~al~~-LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr-~deA~~~l~~a~a~~P~-~~~~~  245 (282)
T 4f3v_A          169 LAGAAGVAHGVAAAN-LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGN-ESAAVALLEWLQTTHPE-PKVAA  245 (282)
T ss_dssp             HHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHSCC-HHHHH
T ss_pred             cHHHHHHHHHHHHHH-CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCc-HHHHH
Confidence              3589999977776 999999999999998654  55 67899999999999996 89999999999999999 88877


Q ss_pred             HHHHHHHHc
Q 029199          159 SYAGFLWET  167 (197)
Q Consensus       159 ~la~~~~~~  167 (197)
                      .+..--+..
T Consensus       246 aL~~~~~~~  254 (282)
T 4f3v_A          246 ALKDPSYRL  254 (282)
T ss_dssp             HHHCTTCCC
T ss_pred             HHhCCCCCC
Confidence            765444333

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.42  E-value=1.3e-13  Score=95.66  Aligned_cols=98  Identities=19%  Similarity=0.106  Sum_probs=85.2

Q ss_pred             HHHHHHHHhhhcCccccc---CCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCH
Q 029199            8 EEVKVMEALWNAGFEQER---GTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNP   84 (197)
Q Consensus         8 ~~~~~~~a~~~~~~~~~~---~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~   84 (197)
                      ..|++.+|+..|..+++.   +|+++..++..|..+..                    .|++++|+++|+++++++|+++
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~--------------------~~~~~~A~~~~~~al~~~p~~~   61 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRT--------------------LGEYRKAEAVLANGVKQFPNHQ   61 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHHCTTCH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHHhCCCch
Confidence            357888999999999999   68899999999998877                    4999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 029199           85 LFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYA  126 (197)
Q Consensus        85 ~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg  126 (197)
                      .+++++|.++.. .|++++|+..|+++++.+|+++.+.....
T Consensus        62 ~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~~~  102 (117)
T 3k9i_A           62 ALRVFYAMVLYN-LGRYEQGVELLLKIIAETSDDETIQSYKQ  102 (117)
T ss_dssp             HHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHCCCHHHHHTHH
T ss_pred             HHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            999999988887 99999999999999999999998765443

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.42  E-value=1.9e-14  Score=114.30  Aligned_cols=147  Identities=10%  Similarity=-0.034  Sum_probs=119.8

Q ss_pred             HHHHhhhcCccccc------CCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCH-
Q 029199           12 VMEALWNAGFEQER------GTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNP-   84 (197)
Q Consensus        12 ~~~a~~~~~~~~~~------~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~-   84 (197)
                      +.+|+..+..+++.      .|..+..+...|..+..                    .|++++|+++|++++++.|... 
T Consensus       159 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~--------------------~~~~~~A~~~~~~a~~~~~~~~~  218 (338)
T 3ro2_A          159 LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYL--------------------LGNFRDAVIAHEQRLLIAKEFGD  218 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH--------------------HTCHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH--------------------hCCHHHHHHHHHHHHHHHHhcCC
Confidence            78888777665543      23334566666666555                    3999999999999998865543 


Q ss_pred             -----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 029199           85 -----LFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGD------GEILSQYAKLVWELHNDQDRAATYYERAVHASPED  153 (197)
Q Consensus        85 -----~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~------~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~  153 (197)
                           .++.++|.++.. .|++++|+.+|++++++.|..      +.++.++|.++...|+ +++|+.++++++++.|..
T Consensus       219 ~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~a~~~~~~~  296 (338)
T 3ro2_A          219 KAAERRAYSNLGNAYIF-LGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQD-YEKAIDYHLKHLAIAQEL  296 (338)
T ss_dssp             HHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHhc
Confidence                 388999988777 999999999999999998766      7899999999999884 999999999999886543


Q ss_pred             ------HHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          154 ------SHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       154 ------~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                            ..++..+|.++..+|++++|...+++.
T Consensus       297 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  329 (338)
T 3ro2_A          297 KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH  329 (338)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence                  558899999999999999998888764

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.40  E-value=1.9e-14  Score=115.55  Aligned_cols=169  Identities=8%  Similarity=-0.153  Sum_probs=132.6

Q ss_pred             CcchhHHHHHHHHhhhcCcccccCCCChhhHHh-hhcc--cCCCCCCCCCCCCCCCC----CcccCCCCCHHHHHHHHHH
Q 029199            3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLA-KGLG--VGGRGGRGGGTGGGGSG----FYPAGSGGDSQGVEEYYKK   75 (197)
Q Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~-~g~~--~~~~~~~~~~~~~~~~~----~~~~~~~g~~~~A~~~~~~   75 (197)
                      |.+|....+..+++..+....+..|..-..++. .|+-  +..-      ..++.-.    ...+...|++++|.+.|+.
T Consensus        54 ~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~------v~~r~dl~LayA~~L~~~g~y~eA~~~l~~  127 (282)
T 4f3v_A           54 RVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYP------VTSPLAITMGFAACEAAQGNYADAMEALEA  127 (282)
T ss_dssp             HHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEE------CSSHHHHHHHHHHHHHHHTCHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccc------cCCHhHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            567788888889999998888888887777776 5542  1000      0000000    0122335999999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCC-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C
Q 029199           76 MVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILAD-PGD-GEILSQYAKLVWELHNDQDRAATYYERAVHAS--P  151 (197)
Q Consensus        76 al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~-P~~-~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~--p  151 (197)
                      ++...|++. +++.+|.+++. .+++++|+.+|+++++.. |.. ..+++++|.++..+|+ +++|+.+|++++...  |
T Consensus       128 ~~~~~p~~~-~~~~~a~l~~~-~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~-~~eAl~~l~~a~~g~~~P  204 (282)
T 4f3v_A          128 APVAGSEHL-VAWMKAVVYGA-AERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLAL-FTEAERRLTEANDSPAGE  204 (282)
T ss_dssp             SCCTTCHHH-HHHHHHHHHHH-TTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTSTTTT
T ss_pred             HHhcCCchH-HHHHHHHHHHH-cCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCC-HHHHHHHHHHHhcCCCCc
Confidence            999999999 99999977777 999999999999887753 221 3589999999999995 999999999998654  5


Q ss_pred             C-CHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          152 E-DSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       152 ~-~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      . .+++++++|.++.++|+.++|...|+++
T Consensus       205 ~~~~da~~~~glaL~~lGr~deA~~~l~~a  234 (282)
T 4f3v_A          205 ACARAIAWYLAMARRSQGNESAAVALLEWL  234 (282)
T ss_dssp             TTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            5 6789999999999999999999999886

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.40  E-value=6.8e-13  Score=112.97  Aligned_cols=153  Identities=19%  Similarity=0.180  Sum_probs=123.1

Q ss_pred             CcchhHHH---HHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHh
Q 029199            3 GTALSEEV---KVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEE   79 (197)
Q Consensus         3 ~~~~~~~~---~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~   79 (197)
                      |.+|.+.|   +..+|+..|..+.+.+|.++..++..|..+..-.                ...+++++|+++|+++.  
T Consensus       183 g~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~----------------~~~~d~~~A~~~~~~aa--  244 (452)
T 3e4b_A          183 ATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDAT----------------LGTPDEKTAQALLEKIA--  244 (452)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGG----------------GSSCCHHHHHHHHHHHG--
T ss_pred             HHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----------------CCCCCHHHHHHHHHHHc--
Confidence            44555566   9999999999999999999987777777664310                01378999999999988  


Q ss_pred             CCCCHHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCC
Q 029199           80 NPGNPLFLSNYAQFLY--QSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELH----NDQDRAATYYERAVHASPED  153 (197)
Q Consensus        80 ~P~~~~~~~~la~~l~--~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~----~~~~~A~~~~~~al~~~p~~  153 (197)
                       |.++.+++++|.+++  ...+++++|+.+|+++.+.  .++.+++++|.+|.. |    +++++|+.+|+++.   |.+
T Consensus       245 -~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~-G~g~~~d~~~A~~~~~~Aa---~g~  317 (452)
T 3e4b_A          245 -PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYYE-GKWVPADAKAAEAHFEKAV---GRE  317 (452)
T ss_dssp             -GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH-CSSSCCCHHHHHHHHHTTT---TTC
T ss_pred             -CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHc-CCCCCCCHHHHHHHHHHHh---CCC
Confidence             899999999997745  4478999999999999854  589999999988874 5    26899999999998   889


Q ss_pred             HHHHHHHHHHHHH----cCCccccccCCCcc
Q 029199          154 SHVHASYAGFLWE----TEEDNDECDAPSEL  180 (197)
Q Consensus       154 ~~~~~~la~~~~~----~g~~~ea~~~~~~~  180 (197)
                      +.+++++|.+|..    ..++++|...|++.
T Consensus       318 ~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A  348 (452)
T 3e4b_A          318 VAADYYLGQIYRRGYLGKVYPQKALDHLLTA  348 (452)
T ss_dssp             HHHHHHHHHHHHTTTTSSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHH
Confidence            9999999998887    33777787777764

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.40  E-value=1.9e-13  Score=104.83  Aligned_cols=138  Identities=17%  Similarity=0.101  Sum_probs=116.8

Q ss_pred             HHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 029199           14 EALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQF   93 (197)
Q Consensus        14 ~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~   93 (197)
                      +|+..|.++.  +..++..++..|..+..                    .+++++|+++|+++++.  .++.++++||.+
T Consensus         4 eA~~~~~~aa--~~g~~~a~~~lg~~~~~--------------------~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~   59 (212)
T 3rjv_A            4 EPGSQYQQQA--EAGDRRAQYYLADTWVS--------------------SGDYQKAEYWAQKAAAQ--GDGDALALLAQL   59 (212)
T ss_dssp             CTTHHHHHHH--HTTCHHHHHHHHHHHHH--------------------HTCHHHHHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred             hHHHHHHHHH--HCCCHHHHHHHHHHHhc--------------------CCCHHHHHHHHHHHHHc--CCHHHHHHHHHH
Confidence            4556665544  44789999998888765                    38999999999999875  689999999955


Q ss_pred             HHHhcC----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHH
Q 029199           94 LYQSKQ----DLPKAEEYYSRAILADPGDGEILSQYAKLVWE----LHNDQDRAATYYERAVHASP--EDSHVHASYAGF  163 (197)
Q Consensus        94 l~~~~g----~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~----~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~  163 (197)
                      +..  +    ++++|+.+|++++  ++.++.+++++|.+|..    .+ ++++|+++|+++++..|  +++.+++++|.+
T Consensus        60 y~~--~g~~~~~~~A~~~~~~A~--~~g~~~a~~~Lg~~y~~g~g~~~-d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~  134 (212)
T 3rjv_A           60 KIR--NPQQADYPQARQLAEKAV--EAGSKSGEIVLARVLVNRQAGAT-DVAHAITLLQDAARDSESDAAVDAQMLLGLI  134 (212)
T ss_dssp             TTS--STTSCCHHHHHHHHHHHH--HTTCHHHHHHHHHHHTCGGGSSC-CHHHHHHHHHHHTSSTTSHHHHHHHHHHHHH
T ss_pred             HHc--CCCCCCHHHHHHHHHHHH--HCCCHHHHHHHHHHHHcCCCCcc-CHHHHHHHHHHHHHcCCCcchHHHHHHHHHH
Confidence            543  6    8999999999995  56899999999999876    45 69999999999999988  459999999999


Q ss_pred             HHH----cCCccccccCCCcc
Q 029199          164 LWE----TEEDNDECDAPSEL  180 (197)
Q Consensus       164 ~~~----~g~~~ea~~~~~~~  180 (197)
                      |..    .+++++|...|++.
T Consensus       135 y~~g~g~~~d~~~A~~~~~~A  155 (212)
T 3rjv_A          135 YASGVHGPEDDVKASEYFKGS  155 (212)
T ss_dssp             HHHTSSSSCCHHHHHHHHHHH
T ss_pred             HHcCCCCCCCHHHHHHHHHHH
Confidence            999    88899998888885

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.39  E-value=2.3e-13  Score=92.29  Aligned_cols=95  Identities=13%  Similarity=0.094  Sum_probs=83.0

Q ss_pred             ChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 029199           29 GQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYY  108 (197)
Q Consensus        29 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~  108 (197)
                      ++..++..|..+..                    .|++++|++.|+++++++|+++.+|+++|.++.. .|++++|+.+|
T Consensus         3 ~~~~~~~~g~~~~~--------------------~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~   61 (111)
T 2l6j_A            3 QFEKQKEQGNSLFK--------------------QGLYREAVHCYDQLITAQPQNPVGYSNKAMALIK-LGEYTQAIQMC   61 (111)
T ss_dssp             HHHHHHHHHHHHHT--------------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-hcCHHHHHHHH
Confidence            35566777766655                    4999999999999999999999999999988887 99999999999


Q ss_pred             HHHHHhCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 029199          109 SRAILADPGD------GEILSQYAKLVWELHNDQDRAATYYER  145 (197)
Q Consensus       109 ~~al~l~P~~------~~~~~~lg~~l~~~~~~~~~A~~~~~~  145 (197)
                      +++++++|++      +.+++++|.++..+|. +++|+..+++
T Consensus        62 ~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~  103 (111)
T 2l6j_A           62 QQGLRYTSTAEHVAIRSKLQYRLELAQGAVGS-VQIPVVEVDE  103 (111)
T ss_dssp             HHHHTSCSSTTSHHHHHHHHHHHHHHHHHHHC-CCCCSSSSSS
T ss_pred             HHHHHhCCCccHHHHHHHHHHHHHHHHHHHHh-HhhhHhHHHH
Confidence            9999999999      9999999999999885 6777766554

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.38  E-value=4e-12  Score=83.11  Aligned_cols=85  Identities=26%  Similarity=0.356  Sum_probs=76.4

Q ss_pred             CChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q 029199           28 VGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEY  107 (197)
Q Consensus        28 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~  107 (197)
                      .++..++..|..+..                    .|++++|+.+|+++++++|+++.+++++|.++.. .|++++|+.+
T Consensus         7 ~~~~~~~~la~~~~~--------------------~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~   65 (91)
T 1na3_A            7 NSAEAWYNLGNAYYK--------------------QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK-QGDYDEAIEY   65 (91)
T ss_dssp             HHHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHH
T ss_pred             ccHHHHHHHHHHHHH--------------------ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-HhhHHHHHHH
Confidence            456777777777655                    4999999999999999999999999999988887 9999999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHc
Q 029199          108 YSRAILADPGDGEILSQYAKLVWELH  133 (197)
Q Consensus       108 ~~~al~l~P~~~~~~~~lg~~l~~~~  133 (197)
                      |+++++++|+++.++.++|.++...|
T Consensus        66 ~~~a~~~~p~~~~~~~~l~~~~~~~g   91 (91)
T 1na3_A           66 YQKALELDPNNAEAKQNLGNAKQKQG   91 (91)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHhcC
Confidence            99999999999999999999987653

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.37  E-value=4.7e-13  Score=111.44  Aligned_cols=118  Identities=18%  Similarity=0.064  Sum_probs=106.6

Q ss_pred             CcchhHHHHHHHHhhhcCcccc----------------cCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCH
Q 029199            3 GTALSEEVKVMEALWNAGFEQE----------------RGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDS   66 (197)
Q Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~----------------~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   66 (197)
                      |+++-..+++.+|+..|..+++                .+|.++.+++..|..+..                    .|++
T Consensus       230 g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~--------------------~g~~  289 (370)
T 1ihg_A          230 GNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLK--------------------MSDW  289 (370)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHH--------------------TTCH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHh--------------------ccCH
Confidence            5677788899999999999988                788889999999998877                    4999


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 029199           67 QGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATY  142 (197)
Q Consensus        67 ~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~  142 (197)
                      ++|+++|+++++++|+++.+|+++|.++.. +|++++|+..|+++++++|+++.++..++.++..+++ .+++...
T Consensus       290 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~-~~~a~k~  363 (370)
T 1ihg_A          290 QGAVDSCLEALEIDPSNTKALYRRAQGWQG-LKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKA-QKDKEKA  363 (370)
T ss_dssp             HHHHHHHHHHHTTCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH-HHHHHHC
T ss_pred             HHHHHHHHHHHHhCchhHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH-HHHHHHH
Confidence            999999999999999999999999988887 9999999999999999999999999999999988885 6666543

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.36  E-value=6.6e-13  Score=94.69  Aligned_cols=115  Identities=11%  Similarity=0.067  Sum_probs=98.5

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHH
Q 029199           63 GGDSQGVEEYYKKMVEENPGNP------LFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGD------GEILSQYAKLVW  130 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~P~~~------~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~------~~~~~~lg~~l~  130 (197)
                      .|++++|+.+|++++++.|...      .++.++|.++.. .|++++|+.+|++++++.+..      ..++.++|.++.
T Consensus        22 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~  100 (164)
T 3ro3_A           22 LGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIF-LGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYT  100 (164)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence            4999999999999999876432      478899988877 999999999999999986653      678999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCccccccCCCc
Q 029199          131 ELHNDQDRAATYYERAVHASPE------DSHVHASYAGFLWETEEDNDECDAPSE  179 (197)
Q Consensus       131 ~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~ea~~~~~~  179 (197)
                      ..++ +++|+.++++++++.+.      ...++.++|.++..+|++++|...+++
T Consensus       101 ~~~~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  154 (164)
T 3ro3_A          101 LLQD-YEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK  154 (164)
T ss_dssp             HTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHhh-HHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            9885 99999999999987432      256789999999999999999887776

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.34  E-value=1.9e-11  Score=97.68  Aligned_cols=117  Identities=10%  Similarity=0.032  Sum_probs=99.2

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHH
Q 029199           62 SGGDSQGVEEYYKKMVEENPGNPL------FLSNYAQFLYQSKQDLPKAEEYYSRAILADPGD------GEILSQYAKLV  129 (197)
Q Consensus        62 ~~g~~~~A~~~~~~al~~~P~~~~------~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~------~~~~~~lg~~l  129 (197)
                      ..|++++|++.|+++++..|....      .++.+|.++.. .|++++|+.+|++++++.+..      ..+++++|.++
T Consensus        87 ~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y  165 (293)
T 2qfc_A           87 KQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLK-KVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIY  165 (293)
T ss_dssp             HTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence            359999999999999999887653      35567755554 899999999999999876554      66899999999


Q ss_pred             HHHcCCHHHHHHHHHHHH---HhCCCCH----HHHHHHHHHHHHcCCccccccCCCcc
Q 029199          130 WELHNDQDRAATYYERAV---HASPEDS----HVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       130 ~~~~~~~~~A~~~~~~al---~~~p~~~----~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      ...| ++++|+.+|++++   +..|++.    .+++++|.++..+|++++|...+++.
T Consensus       166 ~~~~-~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~ka  222 (293)
T 2qfc_A          166 AENG-YLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKA  222 (293)
T ss_dssp             HHTT-CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHcC-CHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence            9988 4999999999999   5567654    68999999999999999998888874

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.33  E-value=2e-12  Score=86.45  Aligned_cols=67  Identities=13%  Similarity=0.222  Sum_probs=36.2

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 029199           89 NYAQFLYQSKQDLPKAEEYYSRAILADPGDGE-ILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVH  157 (197)
Q Consensus        89 ~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~-~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~  157 (197)
                      +.|..++. .|++++|+..|+++++.+|+++. +++++|.++...|+ +++|+++|+++++++|+++.++
T Consensus         5 ~~a~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~   72 (99)
T 2kc7_A            5 KTIKELIN-QGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGD-WQKALNNYQSAIELNPDSPALQ   72 (99)
T ss_dssp             HHHHHHHH-HTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHCTTSTHHH
T ss_pred             HHHHHHHH-cCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCcHHHH
Confidence            34444444 55555555555555555555555 55555555555553 5555555555555555555554

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.33  E-value=8.2e-13  Score=108.31  Aligned_cols=156  Identities=13%  Similarity=0.039  Sum_probs=123.6

Q ss_pred             CcchhHHHHHHHHhhhcCcccccCCCChh-----hHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHH
Q 029199            3 GTALSEEVKVMEALWNAGFEQERGTVGQE-----MYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMV   77 (197)
Q Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-----~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al   77 (197)
                      |.++-..|++.+|+..+..+++..|.+..     ++...|..+..                    .|++++|++.+++++
T Consensus        21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~--------------------~g~~~~A~~~~~~al   80 (373)
T 1hz4_A           21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHC--------------------KGELTRSLALMQQTE   80 (373)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHH--------------------HTCHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHh--------------------cCcHHHHHHHHHHHH
Confidence            44556677888888888877776665532     34445544443                    499999999999999


Q ss_pred             HhCCCCH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 029199           78 EENPGNP------LFLSNYAQFLYQSKQDLPKAEEYYSRAILAD--------PGDGEILSQYAKLVWELHNDQDRAATYY  143 (197)
Q Consensus        78 ~~~P~~~------~~~~~la~~l~~~~g~~~~A~~~~~~al~l~--------P~~~~~~~~lg~~l~~~~~~~~~A~~~~  143 (197)
                      .+.|...      .++.++|.++.. .|++++|+.+|++++++.        |....++.++|.+++..|+ +++|..++
T Consensus        81 ~~~~~~~~~~~~~~~~~~la~~~~~-~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~  158 (373)
T 1hz4_A           81 QMARQHDVWHYALWSLIQQSEILFA-QGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWAR-LDEAEASA  158 (373)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTC-HHHHHHHH
T ss_pred             HHHHhcCcHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcC-HHHHHHHH
Confidence            9876542      346789977777 999999999999999885        4456788899999999885 99999999


Q ss_pred             HHHHHhCCC-----CHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          144 ERAVHASPE-----DSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       144 ~~al~~~p~-----~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      ++++++.|.     ...++.++|.++...|++++|...+++.
T Consensus       159 ~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a  200 (373)
T 1hz4_A          159 RSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRL  200 (373)
T ss_dssp             HHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            999999875     3467899999999999999998777764

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.31  E-value=1.8e-12  Score=104.63  Aligned_cols=116  Identities=15%  Similarity=0.195  Sum_probs=99.9

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHH
Q 029199           62 SGGDSQGVEEYYKKMVEENPGN------PLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPG--D----GEILSQYAKLV  129 (197)
Q Consensus        62 ~~g~~~~A~~~~~~al~~~P~~------~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~--~----~~~~~~lg~~l  129 (197)
                      ..|++++|+.+|++++++.+..      ..++.++|.++.. +|++++|+.+|++++++.+.  +    ..++.++|.++
T Consensus        48 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~-~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~  126 (307)
T 2ifu_A           48 NAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKD-LQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLM  126 (307)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            3599999999999999987643      5688899977776 99999999999999998542  2    46889999998


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          130 WELHNDQDRAATYYERAVHASPED------SHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       130 ~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      .. | ++++|+.+|++++++.|..      ..++.++|.++..+|++++|+..|++.
T Consensus       127 ~~-g-~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  181 (307)
T 2ifu_A          127 EP-L-DLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKE  181 (307)
T ss_dssp             TT-T-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             Hc-C-CHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            87 6 5999999999999998754      578999999999999999999888875

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.30  E-value=6.1e-12  Score=86.56  Aligned_cols=77  Identities=13%  Similarity=-0.040  Sum_probs=73.5

Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          103 KAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       103 ~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      +|+..|+++++.+|+++.+++++|.++...|+ +++|+.+|+++++++|+++.+|+++|.++..+|++++|...+++.
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a   79 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQ-FDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESG   79 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccC-HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            58899999999999999999999999999885 999999999999999999999999999999999999999988874

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.29  E-value=1.2e-12  Score=108.16  Aligned_cols=127  Identities=9%  Similarity=-0.049  Sum_probs=103.5

Q ss_pred             CcchhHHHHHHHHhhhcCcccccCCC-------ChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHH
Q 029199            3 GTALSEEVKVMEALWNAGFEQERGTV-------GQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKK   75 (197)
Q Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~~~p~-------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~   75 (197)
                      |.++...+++.+|+..+..+++..+.       .+.++...|.....                    .|++++|+++|++
T Consensus       148 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~--------------------~~~~~~A~~~~~~  207 (378)
T 3q15_A          148 AEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDD--------------------FKHYDKALPHLEA  207 (378)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHH--------------------TTCHHHHHHHHHH
T ss_pred             HHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHH--------------------hCCHHHHHHHHHH
Confidence            55667778888888888777765443       23455666666655                    4999999999999


Q ss_pred             HHHhCCC------CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 029199           76 MVEENPG------NPLFLSNYAQFLYQSKQDLPKAEEYYSRAIL-----ADPGDGEILSQYAKLVWELHNDQDRAATYYE  144 (197)
Q Consensus        76 al~~~P~------~~~~~~~la~~l~~~~g~~~~A~~~~~~al~-----l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~  144 (197)
                      ++++.+.      ...++.++|.++.. .|++++|+.+|+++++     .+|..+.++.++|.++...|+ +++|+.+++
T Consensus       208 al~~~~~~~~~~~~~~~~~~lg~~y~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~  285 (378)
T 3q15_A          208 ALELAMDIQNDRFIAISLLNIANSYDR-SGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQ-TQKAFQFIE  285 (378)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTC-HHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCC-HHHHHHHHH
Confidence            9997432      24578899988777 9999999999999999     889999999999999999885 999999999


Q ss_pred             HHHHhCC
Q 029199          145 RAVHASP  151 (197)
Q Consensus       145 ~al~~~p  151 (197)
                      +++++.+
T Consensus       286 ~al~~~~  292 (378)
T 3q15_A          286 EGLDHIT  292 (378)
T ss_dssp             HHHHHCC
T ss_pred             HHHHHHH
Confidence            9999843

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.28  E-value=1.3e-11  Score=105.42  Aligned_cols=109  Identities=14%  Similarity=0.212  Sum_probs=90.8

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----HcCCH
Q 029199           64 GDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQ---DLPKAEEYYSRAILADPGDGEILSQYAKLVWE----LHNDQ  136 (197)
Q Consensus        64 g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g---~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~----~~~~~  136 (197)
                      +++++|+.+|+++++.  .++.+++++|.++.. .|   ++++|+.+|+++++.  .++.+++++|.++..    .+ ++
T Consensus       310 ~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~-~~  383 (490)
T 2xm6_A          310 KNREQAISWYTKSAEQ--GDATAQANLGAIYFR-LGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKK-DE  383 (490)
T ss_dssp             CCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH-SCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCC-CH
T ss_pred             CCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHh-CCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCC-CH
Confidence            7889999999998876  467888889966665 45   788999999999876  678999999988877    45 58


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCccccccCCCcc
Q 029199          137 DRAATYYERAVHASPEDSHVHASYAGFLWE----TEEDNDECDAPSEL  180 (197)
Q Consensus       137 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~ea~~~~~~~  180 (197)
                      ++|+.+|+++++.  .++.+++++|.++..    .+++++|...|++.
T Consensus       384 ~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A  429 (490)
T 2xm6_A          384 QQAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTA  429 (490)
T ss_dssp             HHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence            9999999999875  468899999999998    78999988888875

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=99.28  E-value=9.5e-12  Score=99.65  Aligned_cols=129  Identities=12%  Similarity=0.069  Sum_probs=101.6

Q ss_pred             HHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCC--CHHH
Q 029199            9 EVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPG--NPLF   86 (197)
Q Consensus         9 ~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~--~~~~   86 (197)
                      +.++.+++...      +|++++.++..|++....-+..         ...+...+....|...+++++++||+  +..+
T Consensus       137 ~~~~~~~l~~~------~~~dve~L~W~ai~~ss~a~~~---------~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA  201 (301)
T 3u64_A          137 EQRLHKVLSRC------TRVDVGTLYWVGTGYVAAFALT---------PLGSALPDTVHAAVMMLERACDLWPSYQEGAV  201 (301)
T ss_dssp             HHHHHHHHTTC------CGGGHHHHHHHHHHHHHHHTTS---------CTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHH
T ss_pred             hhhHHHHHHHc------CccccHHHHHHHHHHHHHHhcC---------CCChHHHHhHHHHHHHHHHHHHhCCCcccCHH
Confidence            45667776664      7889999998888865421100         00112236778999999999999999  6779


Q ss_pred             HHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 029199           87 LSNYAQFLYQS----KQDLPKAEEYYSRAILADPGD-GEILSQYAKLVWELHNDQDRAATYYERAVHASPE  152 (197)
Q Consensus        87 ~~~la~~l~~~----~g~~~~A~~~~~~al~l~P~~-~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~  152 (197)
                      |.-+|.+++..    -|+.++|+++|++|++++|+. +.+++.+|..++...+++++|..+++++++.+|.
T Consensus       202 ~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          202 WNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE  272 (301)
T ss_dssp             HHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred             HHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence            99999555541    299999999999999999975 9999999999988644699999999999999876

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.26  E-value=1e-10  Score=77.97  Aligned_cols=84  Identities=14%  Similarity=0.151  Sum_probs=75.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 029199           61 GSGGDSQGVEEYYKKMVEENPGNPL-FLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRA  139 (197)
Q Consensus        61 ~~~g~~~~A~~~~~~al~~~P~~~~-~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A  139 (197)
                      ...|++++|++.|+++++.+|+++. +|+++|.++.. .|++++|+.+|+++++++|+++.++.+        + .+.++
T Consensus        11 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~--------~-~~~~a   80 (99)
T 2kc7_A           11 INQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRK-LGDWQKALNNYQSAIELNPDSPALQAR--------K-MVMDI   80 (99)
T ss_dssp             HHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCTTSTHHHHH--------H-HHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCcHHHHHH--------H-HHHHH
Confidence            3469999999999999999999999 99999988887 999999999999999999999998755        3 37889


Q ss_pred             HHHHHHHHHhCCCCH
Q 029199          140 ATYYERAVHASPEDS  154 (197)
Q Consensus       140 ~~~~~~al~~~p~~~  154 (197)
                      +.+|++++..+|+++
T Consensus        81 ~~~~~~~~~~~p~~~   95 (99)
T 2kc7_A           81 LNFYNKDMYNQLEHH   95 (99)
T ss_dssp             HHHHCCTTHHHHCCS
T ss_pred             HHHHHHHhccCcccc
Confidence            999999999888764

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.26  E-value=1e-11  Score=92.71  Aligned_cols=116  Identities=12%  Similarity=0.001  Sum_probs=96.8

Q ss_pred             CCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH------hCCCCHHHHHHHHHHHHHHcC
Q 029199           62 SGGDSQGVEEYYKKMVEENP-GNPLFLSNYAQFLYQSKQDLPKAEEYYSRAIL------ADPGDGEILSQYAKLVWELHN  134 (197)
Q Consensus        62 ~~g~~~~A~~~~~~al~~~P-~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~------l~P~~~~~~~~lg~~l~~~~~  134 (197)
                      ..|++++|.+.++.... +| ....++..+|.++.. .|++++|+.+|+++++      ..|..+.++.++|.++...|+
T Consensus         4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~   81 (203)
T 3gw4_A            4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAF-MDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN   81 (203)
T ss_dssp             ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence            35999999996665544 55 678899999988777 9999999999999999      556777899999999999884


Q ss_pred             CHHHHHHHHHHHHHh---CCCC----HHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          135 DQDRAATYYERAVHA---SPED----SHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       135 ~~~~A~~~~~~al~~---~p~~----~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                       +++|+.++++++++   .+++    ..++.++|.++..+|++++|...+++.
T Consensus        82 -~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  133 (203)
T 3gw4_A           82 -WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKS  133 (203)
T ss_dssp             -HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence             99999999999998   4433    467899999999999999998887774

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.25  E-value=1.1e-11  Score=98.99  Aligned_cols=117  Identities=10%  Similarity=0.018  Sum_probs=96.1

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHH
Q 029199           62 SGGDSQGVEEYYKKMVEENPGNPL------FLSNYAQFLYQSKQDLPKAEEYYSRAILADPGD------GEILSQYAKLV  129 (197)
Q Consensus        62 ~~g~~~~A~~~~~~al~~~P~~~~------~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~------~~~~~~lg~~l  129 (197)
                      ..|++++|++.|+++++..|.++.      .+..+|.++.. .+++++|+.+|++++.+.+..      ..++.++|.++
T Consensus        87 ~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y  165 (293)
T 3u3w_A           87 KQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLK-KVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIY  165 (293)
T ss_dssp             HTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTT-SSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence            359999999999999998888766      23357765554 889999999999999975543      33799999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          130 WELHNDQDRAATYYERAVHA-------SPEDSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       130 ~~~~~~~~~A~~~~~~al~~-------~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      ...| ++++|+.+|+++++.       .|....+++++|.++.++|++++|...+++.
T Consensus       166 ~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~a  222 (293)
T 3u3w_A          166 AENG-YLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKA  222 (293)
T ss_dssp             HHTT-CHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHcC-CHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            9988 599999999999953       2333458899999999999999998887763

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.20  E-value=7.1e-11  Score=79.72  Aligned_cols=85  Identities=11%  Similarity=0.041  Sum_probs=69.4

Q ss_pred             cCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHH
Q 029199           25 RGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKA  104 (197)
Q Consensus        25 ~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A  104 (197)
                      .+|+++..++..|..+..                    .|++++|+.+|+++++++|+++.+|+++|.++.. .|++++|
T Consensus         2 ~~p~~~~~~~~lg~~~~~--------------------~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~g~~~~A   60 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLK--------------------HDNASRALALFEELVETDPDYVGTYYHLGKLYER-LDRTDDA   60 (100)
T ss_dssp             ---CCHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH-TTCHHHH
T ss_pred             CCccCHHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cCCHHHH
Confidence            479999999999999877                    4999999999999999999999999999988877 9999999


Q ss_pred             HHHHHHHHHhCCC--CHHHHHHHHHHHH
Q 029199          105 EEYYSRAILADPG--DGEILSQYAKLVW  130 (197)
Q Consensus       105 ~~~~~~al~l~P~--~~~~~~~lg~~l~  130 (197)
                      +..|++++++.|.  +......+..++.
T Consensus        61 ~~~~~~al~l~~~~~~~~~~~~l~~~l~   88 (100)
T 3ma5_A           61 IDTYAQGIEVAREEGTQKDLSELQDAKL   88 (100)
T ss_dssp             HHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhcCCchhHHHHHHHHHH
Confidence            9999999998663  3333344444433

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.19  E-value=1e-11  Score=88.44  Aligned_cols=128  Identities=19%  Similarity=0.092  Sum_probs=102.9

Q ss_pred             CcchhHHHHHHHHhhhcCcccccCCCCh------hhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHH
Q 029199            3 GTALSEEVKVMEALWNAGFEQERGTVGQ------EMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKM   76 (197)
Q Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a   76 (197)
                      |.++...+++.+|+..+..+++..+...      .++...|.....                    .|++++|+.+|+++
T Consensus        16 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~--------------------~g~~~~A~~~~~~a   75 (164)
T 3ro3_A           16 GNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIF--------------------LGEFETASEYYKKT   75 (164)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH--------------------cCCHHHHHHHHHHH
Confidence            5566777888999998888877655432      355666666555                    49999999999999


Q ss_pred             HHhCCCC------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 029199           77 VEENPGN------PLFLSNYAQFLYQSKQDLPKAEEYYSRAILADP------GDGEILSQYAKLVWELHNDQDRAATYYE  144 (197)
Q Consensus        77 l~~~P~~------~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P------~~~~~~~~lg~~l~~~~~~~~~A~~~~~  144 (197)
                      +++.+..      ..++.++|.++.. .|++++|+.++++++++.+      ..+.++.++|.++...|+ +++|+++++
T Consensus        76 ~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~  153 (164)
T 3ro3_A           76 LLLARQLKDRAVEAQSCYSLGNTYTL-LQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN-HDQAMHFAE  153 (164)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHH
T ss_pred             HHHHHHhCCcHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccC-HHHHHHHHH
Confidence            9987654      6688899988777 9999999999999998743      225688999999999885 999999999


Q ss_pred             HHHHhCCC
Q 029199          145 RAVHASPE  152 (197)
Q Consensus       145 ~al~~~p~  152 (197)
                      +++++...
T Consensus       154 ~a~~~~~~  161 (164)
T 3ro3_A          154 KHLEISRE  161 (164)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHHH
Confidence            99987654

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.19  E-value=4.2e-11  Score=101.86  Aligned_cols=110  Identities=11%  Similarity=0.115  Sum_probs=95.8

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--HHcCCHHH
Q 029199           65 DSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSK----QDLPKAEEYYSRAILADPGDGEILSQYAKLVW--ELHNDQDR  138 (197)
Q Consensus        65 ~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~----g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~--~~~~~~~~  138 (197)
                      ++++|++.|+++++..|.++..++++|.++.. .    +++++|+.+|+++.   |.++.+++++|.+|+  ...+++++
T Consensus       194 ~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~-g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~  269 (452)
T 3e4b_A          194 QQAELLKQMEAGVSRGTVTAQRVDSVARVLGD-ATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQ  269 (452)
T ss_dssp             HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTC-GGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHH
Confidence            99999999999999999999999999966543 4    59999999999998   999999999999854  33447999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----CccccccCCCccc
Q 029199          139 AATYYERAVHASPEDSHVHASYAGFLWETE-----EDNDECDAPSELD  181 (197)
Q Consensus       139 A~~~~~~al~~~p~~~~~~~~la~~~~~~g-----~~~ea~~~~~~~~  181 (197)
                      |+.+|+++.+.  .++.+++++|.+|. .|     ++++|...|++..
T Consensus       270 A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa  314 (452)
T 3e4b_A          270 MMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV  314 (452)
T ss_dssp             HHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh
Confidence            99999999864  58999999999998 55     8888988888753

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.17  E-value=1.1e-10  Score=99.71  Aligned_cols=145  Identities=15%  Similarity=0.096  Sum_probs=88.3

Q ss_pred             HHHHHHHhhhcCcccccCCCChhhHHhhhcccCC-CCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 029199            9 EVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGG-RGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFL   87 (197)
Q Consensus         9 ~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~   87 (197)
                      .+++.+|+..|..+.+.  +++..++..|..+.. .|                 ..+++++|+++|+++++.  .++.++
T Consensus        56 ~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g-----------------~~~~~~~A~~~~~~a~~~--~~~~a~  114 (490)
T 2xm6_A           56 TKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEG-----------------VPQDYAQAVIWYKKAALK--GLPQAQ  114 (490)
T ss_dssp             CCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSS-----------------SCCCHHHHHHHHHHHHHT--TCHHHH
T ss_pred             CcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCC-----------------CCCCHHHHHHHHHHHHHC--CCHHHH
Confidence            44566666666665543  556666665554322 11                 026677777777777654  466677


Q ss_pred             HHHHHHHHHh---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 029199           88 SNYAQFLYQS---KQDLPKAEEYYSRAILADPGDGEILSQYAKLVWE----LHNDQDRAATYYERAVHASPEDSHVHASY  160 (197)
Q Consensus        88 ~~la~~l~~~---~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~l  160 (197)
                      ++||.++..-   .+++++|+.+|+++.+.  .++.+++++|.+|..    .+ ++++|+++|+++++.  .++.+++++
T Consensus       115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~-d~~~A~~~~~~a~~~--~~~~a~~~L  189 (490)
T 2xm6_A          115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTR-DYVMAREWYSKAAEQ--GNVWSCNQL  189 (490)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCC-CHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred             HHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHHHC--CCHHHHHHH
Confidence            7777443321   35677777777776553  466777777766655    23 467777777777664  456777777


Q ss_pred             HHHHHH----cCCccccccCCCc
Q 029199          161 AGFLWE----TEEDNDECDAPSE  179 (197)
Q Consensus       161 a~~~~~----~g~~~ea~~~~~~  179 (197)
                      |.++..    .+++++|...|++
T Consensus       190 g~~y~~g~g~~~~~~~A~~~~~~  212 (490)
T 2xm6_A          190 GYMYSRGLGVERNDAISAQWYRK  212 (490)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHH
T ss_pred             HHHHhcCCCCCcCHHHHHHHHHH
Confidence            777766    6666666666655

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.17  E-value=1.6e-10  Score=82.88  Aligned_cols=108  Identities=17%  Similarity=0.143  Sum_probs=92.9

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---HcCCHHHHH
Q 029199           64 GDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWE---LHNDQDRAA  140 (197)
Q Consensus        64 g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~---~~~~~~~A~  140 (197)
                      +++++|+++|+++.+..+..+.    +|.++.. .+..++|+.+|+++.+.  .++.+++++|.+|..   ..+++++|+
T Consensus         9 ~d~~~A~~~~~~aa~~g~~~a~----lg~~y~~-g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~   81 (138)
T 1klx_A            9 KDLKKAIQYYVKACELNEMFGC----LSLVSNS-QINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA   81 (138)
T ss_dssp             HHHHHHHHHHHHHHHTTCTTHH----HHHHTCT-TSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             cCHHHHHHHHHHHHcCCCHhhh----HHHHHHc-CCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence            6889999999999998754444    8866555 78899999999999986  789999999999887   133699999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHH----cCCccccccCCCcc
Q 029199          141 TYYERAVHASPEDSHVHASYAGFLWE----TEEDNDECDAPSEL  180 (197)
Q Consensus       141 ~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~ea~~~~~~~  180 (197)
                      ++|+++.+.  .++.+++++|.+|..    .+++++|...|++.
T Consensus        82 ~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A  123 (138)
T 1klx_A           82 QYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKA  123 (138)
T ss_dssp             HHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred             HHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHH
Confidence            999999986  689999999999999    88999998888875

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.14  E-value=3.7e-10  Score=75.82  Aligned_cols=73  Identities=15%  Similarity=0.084  Sum_probs=66.8

Q ss_pred             CCCCHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 029199           80 NPGNPLFLSNYAQFLYQSKQD---LPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDS  154 (197)
Q Consensus        80 ~P~~~~~~~~la~~l~~~~g~---~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~  154 (197)
                      +|+++.++..+|.+++. .++   .++|...++++|+++|+++.+++.+|..+++.| ++++|+.+++++++.+|.++
T Consensus         2 ~p~~~~~~~~~a~al~~-~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g-~y~~Ai~~w~~~l~~~p~~~   77 (93)
T 3bee_A            2 NAVTATQLAAKATTLYY-LHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISF-RFQEAIDTWVLLLDSNDPNL   77 (93)
T ss_dssp             CCCCHHHHHHHHHHHHH-TTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTCCCTTC
T ss_pred             CCCCHHHHHHHHHHHHH-hcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCc
Confidence            79999999999999886 444   799999999999999999999999999999977 59999999999999999843

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.14  E-value=1.7e-09  Score=77.37  Aligned_cols=124  Identities=17%  Similarity=0.093  Sum_probs=97.5

Q ss_pred             HHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 029199            8 EEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFL   87 (197)
Q Consensus         8 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~   87 (197)
                      ....+.+|+..|.++.+.+  ++...  .|..+..                    .+..++|+++|+++.+.  .++.++
T Consensus         7 ~~~d~~~A~~~~~~aa~~g--~~~a~--lg~~y~~--------------------g~~~~~A~~~~~~Aa~~--g~~~a~   60 (138)
T 1klx_A            7 VKKDLKKAIQYYVKACELN--EMFGC--LSLVSNS--------------------QINKQKLFQYLSKACEL--NSGNGC   60 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHTT--CTTHH--HHHHTCT--------------------TSCHHHHHHHHHHHHHT--TCHHHH
T ss_pred             CccCHHHHHHHHHHHHcCC--CHhhh--HHHHHHc--------------------CCCHHHHHHHHHHHHcC--CCHHHH
Confidence            3567889999998877665  44333  5555443                    36788899999999987  789999


Q ss_pred             HHHHHHHHH---hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 029199           88 SNYAQFLYQ---SKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWE----LHNDQDRAATYYERAVHASPEDSHVHASY  160 (197)
Q Consensus        88 ~~la~~l~~---~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~l  160 (197)
                      ++||.++..   ..+++++|+.+|+++.+.  .++.+++++|.+|..    .+ ++++|+.+|+++.+.  .++.+..++
T Consensus        61 ~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~-d~~~A~~~~~~Aa~~--g~~~A~~~l  135 (138)
T 1klx_A           61 RFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVK-NEKQAVKTFEKACRL--GSEDACGIL  135 (138)
T ss_dssp             HHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCC-CHHHHHHHHHHHHHT--TCHHHHHHC
T ss_pred             HHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCc-CHHHHHHHHHHHHHC--CCHHHHHHH
Confidence            999965553   157999999999999986  789999999999887    44 699999999999987  467777766


Q ss_pred             HH
Q 029199          161 AG  162 (197)
Q Consensus       161 a~  162 (197)
                      +.
T Consensus       136 ~~  137 (138)
T 1klx_A          136 NN  137 (138)
T ss_dssp             --
T ss_pred             hh
Confidence            54

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.13  E-value=7.8e-11  Score=96.44  Aligned_cols=156  Identities=13%  Similarity=-0.001  Sum_probs=117.9

Q ss_pred             CcchhHHHHHHHHhhhcCcccccCCCChhh------HHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHH
Q 029199            3 GTALSEEVKVMEALWNAGFEQERGTVGQEM------YLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKM   76 (197)
Q Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a   76 (197)
                      |.++...|++.+|+..+..+.+..|.....      ++..|.....                    .|++++|+.+|+++
T Consensus        60 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~--------------------~G~~~~A~~~~~~a  119 (373)
T 1hz4_A           60 GEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFA--------------------QGFLQTAWETQEKA  119 (373)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHH
T ss_pred             HHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH--------------------CCCHHHHHHHHHHH
Confidence            455667788888888888877665543222      3444544443                    49999999999999


Q ss_pred             HHhC--------CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHHcCCHHHHHHHH
Q 029199           77 VEEN--------PGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPG-----DGEILSQYAKLVWELHNDQDRAATYY  143 (197)
Q Consensus        77 l~~~--------P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~-----~~~~~~~lg~~l~~~~~~~~~A~~~~  143 (197)
                      +++.        |....++.++|.+++. .|++++|+.++++++++.|.     ...++.++|.++...|+ +++|..++
T Consensus       120 l~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~l  197 (373)
T 1hz4_A          120 FQLINEQHLEQLPMHEFLVRIRAQLLWA-WARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGD-LDNARSQL  197 (373)
T ss_dssp             HHHHHHTTCTTSTHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTC-HHHHHHHH
T ss_pred             HHHHHHhccccCcHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCC-HHHHHHHH
Confidence            9875        4456678889988887 99999999999999999875     35678899999999885 99999999


Q ss_pred             HHHHHhCC--CCHHHHH-----HHHHHHHHcCCccccccCCCcc
Q 029199          144 ERAVHASP--EDSHVHA-----SYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       144 ~~al~~~p--~~~~~~~-----~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      ++++++.+  ..+..+.     .++.++...|++++|...+++.
T Consensus       198 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a  241 (373)
T 1hz4_A          198 NRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHT  241 (373)
T ss_dssp             HHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            99998742  2322222     3445688999999997776664

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=99.12  E-value=1.1e-09  Score=79.76  Aligned_cols=102  Identities=12%  Similarity=0.093  Sum_probs=91.2

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHHcCCHHH
Q 029199           64 GDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQ---DLPKAEEYYSRAILAD-P-GDGEILSQYAKLVWELHNDQDR  138 (197)
Q Consensus        64 g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g---~~~~A~~~~~~al~l~-P-~~~~~~~~lg~~l~~~~~~~~~  138 (197)
                      .....+.+.|++.++.+|.+..+.+++|.++.. .+   +.++++..++..++.+ | ++.+.+|++|..+++++ ++++
T Consensus        12 ~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~-S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~-~Y~~   89 (152)
T 1pc2_A           12 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVR-SKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLK-EYEK   89 (152)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTS-CHHH
T ss_pred             HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHcc-CHHH
Confidence            567788999999999999999999999977776 77   6679999999999999 7 67999999999999988 5999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 029199          139 AATYYERAVHASPEDSHVHASYAGFLWET  167 (197)
Q Consensus       139 A~~~~~~al~~~p~~~~~~~~la~~~~~~  167 (197)
                      |+++++++|+++|+|..+..-.-.+-.+.
T Consensus        90 A~~y~~~lL~ieP~n~QA~~Lk~~ie~~~  118 (152)
T 1pc2_A           90 ALKYVRGLLQTEPQNNQAKELERLIDKAM  118 (152)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            99999999999999999988777666554

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.10  E-value=9.5e-11  Score=95.21  Aligned_cols=151  Identities=13%  Similarity=-0.009  Sum_probs=110.7

Q ss_pred             CcchhHHHHHHHHhhhcCcccccCC--CChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhC
Q 029199            3 GTALSEEVKVMEALWNAGFEQERGT--VGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEEN   80 (197)
Q Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~~~p--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~   80 (197)
                      |+++-.+|++.+|+..+..+++.+|  ++.+++....-.+..                    .|+.+.|.+.+++..+.+
T Consensus       107 a~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~--------------------~~r~d~A~k~l~~~~~~~  166 (310)
T 3mv2_B          107 ATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALL--------------------NNNVSTASTIFDNYTNAI  166 (310)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHH--------------------CCCHHHHHHHHHHHHhcC
Confidence            5677788888899988888877776  666666555544444                    488999999999998888


Q ss_pred             CC----CHHHHHHHHHH--HHHhcC--CHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Q 029199           81 PG----NPLFLSNYAQF--LYQSKQ--DLPKAEEYYSRAILADPG--DGEILSQYAKLVWELHNDQDRAATYYERAVHA-  149 (197)
Q Consensus        81 P~----~~~~~~~la~~--l~~~~g--~~~~A~~~~~~al~l~P~--~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~-  149 (197)
                      |+    +-.++.+++..  ... .|  ++.+|...|+++.+..|+  ++..+++   ++..+|+ +++|...++++++. 
T Consensus       167 ~d~~~~~d~~l~~Laea~v~l~-~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~-~~eAe~~L~~l~~~~  241 (310)
T 3mv2_B          167 EDTVSGDNEMILNLAESYIKFA-TNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRN-IAEAQGIVELLLSDY  241 (310)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHH-HTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTC-HHHHHHHHHHHHSHH
T ss_pred             ccccccchHHHHHHHHHHHHHH-hCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCC-HHHHHHHHHHHHHhc
Confidence            83    22333444422  333 44  899999999998887776  4555555   6777785 89999999877776 


Q ss_pred             ---------CCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          150 ---------SPEDSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       150 ---------~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                               +|+|+.++.|++.+...+|+  ++.+.++++
T Consensus       242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL  279 (310)
T 3mv2_B          242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQL  279 (310)
T ss_dssp             HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHH
T ss_pred             ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHH
Confidence                     48899999999888888887  665666554

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.04  E-value=1.7e-10  Score=99.49  Aligned_cols=117  Identities=15%  Similarity=0.070  Sum_probs=98.2

Q ss_pred             CCCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CCCCH---HHHHHH
Q 029199           62 SGGDSQGVEEYYKKMVEE-----NPGN---PLFLSNYAQFLYQSKQDLPKAEEYYSRAILA-----DPGDG---EILSQY  125 (197)
Q Consensus        62 ~~g~~~~A~~~~~~al~~-----~P~~---~~~~~~la~~l~~~~g~~~~A~~~~~~al~l-----~P~~~---~~~~~l  125 (197)
                      ..|++++|+..|++++++     .|++   ...+.+||.++.. +|++++|+.+++++|++     -|++|   ..++|+
T Consensus       321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~-~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL  399 (490)
T 3n71_A          321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSY-LQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA  399 (490)
T ss_dssp             TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred             hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            469999999999999986     3555   4568899977777 99999999999999987     35555   568899


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHH---HHHHHHHHHHcCCccccccCCCcc
Q 029199          126 AKLVWELHNDQDRAATYYERAVHA-----SPEDSHV---HASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       126 g~~l~~~~~~~~~A~~~~~~al~~-----~p~~~~~---~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      |.+|..+|+ +++|+.+|++|+++     -|++|.+   ..+++.++.+++++++|+..|+++
T Consensus       400 a~~~~~~G~-~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~  461 (490)
T 3n71_A          400 GLTNWHAGH-IEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKM  461 (490)
T ss_dssp             HHHHHHTTC-HHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCC-HHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999885 99999999999986     3777765   568899999999999998777764

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.99  E-value=8e-09  Score=70.32  Aligned_cols=81  Identities=15%  Similarity=0.184  Sum_probs=70.8

Q ss_pred             CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 029199           83 NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILAD-------PGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSH  155 (197)
Q Consensus        83 ~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~-------P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~  155 (197)
                      ++.-.+.+|..++. .+++..|+.+|++|++..       +..+.++.++|.+++++| ++++|+.+++++++++|+++.
T Consensus         4 sa~dc~~lG~~~~~-~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g-~~~~A~~~~~~al~l~P~~~~   81 (104)
T 2v5f_A            4 TAEDCFELGKVAYT-EADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQG-DLDKALLLTKKLLELDPEHQR   81 (104)
T ss_dssp             CHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHH
T ss_pred             CHHHHHHHHHHHHH-ccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhcCCCCHH
Confidence            35567789988888 999999999999999873       456889999999999988 499999999999999999999


Q ss_pred             HHHHHHHHHH
Q 029199          156 VHASYAGFLW  165 (197)
Q Consensus       156 ~~~~la~~~~  165 (197)
                      +..+++.+-.
T Consensus        82 ~~~n~~~~~~   91 (104)
T 2v5f_A           82 ANGNLKYFEY   91 (104)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHhhHHHHHH
Confidence            9999984443

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.97  E-value=2.3e-09  Score=71.89  Aligned_cols=77  Identities=13%  Similarity=0.014  Sum_probs=66.9

Q ss_pred             CCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHH
Q 029199           26 GTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAE  105 (197)
Q Consensus        26 ~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~  105 (197)
                      +|.+++++...|..+...++                 ....++|.+.++++++++|+++.+++.+|..++. .|++++|+
T Consensus         2 ~p~~~~~~~~~a~al~~~~~-----------------~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~-~g~y~~Ai   63 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHK-----------------QAMTDEVSLLLEQALQLEPYNEAALSLIANDHFI-SFRFQEAI   63 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTT-----------------TCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhcC-----------------CCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHH-cCCHHHHH
Confidence            68999999999988744321                 1346899999999999999999999999988887 99999999


Q ss_pred             HHHHHHHHhCCCCHH
Q 029199          106 EYYSRAILADPGDGE  120 (197)
Q Consensus       106 ~~~~~al~l~P~~~~  120 (197)
                      .+|+++++.+|.++.
T Consensus        64 ~~w~~~l~~~p~~~~   78 (93)
T 3bee_A           64 DTWVLLLDSNDPNLD   78 (93)
T ss_dssp             HHHHHHHTCCCTTCC
T ss_pred             HHHHHHHhhCCCCcc
Confidence            999999999998654

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.95  E-value=1.1e-09  Score=88.88  Aligned_cols=114  Identities=11%  Similarity=0.056  Sum_probs=92.6

Q ss_pred             CCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-----C-HHHHHHHHHHHHHHc-
Q 029199           63 GGDSQGVEEYYKKMVEENP--GNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPG-----D-GEILSQYAKLVWELH-  133 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~P--~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~-----~-~~~~~~lg~~l~~~~-  133 (197)
                      .|++++|++.+++.+..+|  ++.+++..++.++.. +|+.+.|.+.+++..+.+|+     + ..+...-+++....| 
T Consensus       113 ~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~-~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~  191 (310)
T 3mv2_B          113 LGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALL-NNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNK  191 (310)
T ss_dssp             HTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             cCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCC
Confidence            4999999999999999997  888899888888887 99999999999999999993     3 333333355565555 


Q ss_pred             CCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          134 NDQDRAATYYERAVHASPE--DSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       134 ~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      +++++|...|+++....|+  .+..+++   ++.++|++++|+..++.+
T Consensus       192 ~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l  237 (310)
T 3mv2_B          192 ETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELL  237 (310)
T ss_dssp             STTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHH
Confidence            2489999999999888886  4556666   899999999998888754

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.91  E-value=4.4e-09  Score=87.09  Aligned_cols=114  Identities=10%  Similarity=-0.043  Sum_probs=90.3

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh--cC--C---HHHHHHHHHH--HHHhCCCCHHHHHHHHHHHHHHcC
Q 029199           64 GDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQS--KQ--D---LPKAEEYYSR--AILADPGDGEILSQYAKLVWELHN  134 (197)
Q Consensus        64 g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~--~g--~---~~~A~~~~~~--al~l~P~~~~~~~~lg~~l~~~~~  134 (197)
                      .++.+|+.+|+++++++|+++.+|..++.++...  .+  .   .......++.  ++..+|.++.++..++..+...| 
T Consensus       213 ~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~g-  291 (372)
T 3ly7_A          213 KSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKG-  291 (372)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHT-
T ss_pred             HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCC-
Confidence            5678999999999999999999999887554321  11  1   1111112222  33668999999999998887767 


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCc
Q 029199          135 DQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSE  179 (197)
Q Consensus       135 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~  179 (197)
                      ++++|+.++++|+.++|+ ...|..+|.++...|++++|.+.|++
T Consensus       292 d~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~  335 (372)
T 3ly7_A          292 KTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLT  335 (372)
T ss_dssp             CHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            599999999999999975 78889999999999999999999988

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=98.90  E-value=1.6e-09  Score=91.85  Aligned_cols=157  Identities=5%  Similarity=-0.109  Sum_probs=58.5

Q ss_pred             CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCC--------CCCCCCCCCcccCCCCCHHHHHHHHH
Q 029199            3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGG--------GTGGGGSGFYPAGSGGDSQGVEEYYK   74 (197)
Q Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~--------~~~~~~~~~~~~~~~g~~~~A~~~~~   74 (197)
                      |.++...|++++|+.-+....+.. .++.+....+..+.++|....        ...++...|-.|...|.+++|..+|.
T Consensus        68 ~~~ae~~g~~EeAi~yl~~ark~~-~~~~i~~~Li~~Y~Klg~l~e~e~f~~~pn~~a~~~IGd~~~~~g~yeeA~~~Y~  146 (449)
T 1b89_A           68 VQAANTSGNWEELVKYLQMARKKA-RESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYN  146 (449)
T ss_dssp             ------------------------------------------CHHHHTTTTTCC----------------CTTTHHHHHH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHhCCHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            445556677777777666665532 224555555555566655211        11245566777777888888888888


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 029199           75 KMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDS  154 (197)
Q Consensus        75 ~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~  154 (197)
                      ++        ..|..+|.++.. +|++++|+++|+++     +++.+|.....++...| +++.|..+..+ +...|+  
T Consensus       147 ~a--------~n~~~LA~~L~~-Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~-ef~lA~~~~l~-L~~~ad--  208 (449)
T 1b89_A          147 NV--------SNFGRLASTLVH-LGEYQAAVDGARKA-----NSTRTWKEVCFACVDGK-EFRLAQMCGLH-IVVHAD--  208 (449)
T ss_dssp             HT--------TCHHHHHHHHHT-TTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTT-CHHHHHHTTTT-TTTCHH--
T ss_pred             Hh--------hhHHHHHHHHHH-hccHHHHHHHHHHc-----CCchhHHHHHHHHHHcC-cHHHHHHHHHH-HHhCHh--
Confidence            76        357778877776 88888888888888     36666666555555544 24555444443 112222  


Q ss_pred             HHHHHHHHHHHHcCCccccccCCCc
Q 029199          155 HVHASYAGFLWETEEDNDECDAPSE  179 (197)
Q Consensus       155 ~~~~~la~~~~~~g~~~ea~~~~~~  179 (197)
                       -...+..+|.+.|+++++...++.
T Consensus       209 -~l~~lv~~Yek~G~~eEai~lLe~  232 (449)
T 1b89_A          209 -ELEELINYYQDRGYFEELITMLEA  232 (449)
T ss_dssp             -HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             -hHHHHHHHHHHCCCHHHHHHHHHH
Confidence             222344445555555555444443

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.88  E-value=9.4e-09  Score=87.28  Aligned_cols=94  Identities=13%  Similarity=0.072  Sum_probs=78.9

Q ss_pred             CCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHH
Q 029199           63 GGDSQGVEEYYKKMVEE-----NPGNP---LFLSNYAQFLYQSKQDLPKAEEYYSRAILA-----DPGDG---EILSQYA  126 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~-----~P~~~---~~~~~la~~l~~~~g~~~~A~~~~~~al~l-----~P~~~---~~~~~lg  126 (197)
                      .|++++|+..|++++++     .|+++   ..+.++|.++.. +|++++|+.+|+++|++     -|++|   ..++|+|
T Consensus       311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~-~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLY-MQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHh-hcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            48999999999999985     46665   467899978777 99999999999999977     35555   5688999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhC-----CCCHHHHH
Q 029199          127 KLVWELHNDQDRAATYYERAVHAS-----PEDSHVHA  158 (197)
Q Consensus       127 ~~l~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~  158 (197)
                      .+|..+|+ +++|+.+|++|+++.     |++|.+..
T Consensus       390 ~~~~~qg~-~~eA~~~~~~Al~i~~~~lG~~Hp~~~~  425 (433)
T 3qww_A          390 RLYMGLEN-KAAGEKALKKAIAIMEVAHGKDHPYISE  425 (433)
T ss_dssp             HHHHHTTC-HHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred             HHHHhccC-HHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence            99999885 999999999999874     88887643

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.86  E-value=8.3e-09  Score=97.34  Aligned_cols=142  Identities=11%  Similarity=0.049  Sum_probs=84.7

Q ss_pred             CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCC
Q 029199            3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPG   82 (197)
Q Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~   82 (197)
                      |.++.++|++++||..|-+     .+++..|...|-.+..                    .|++++|+++|+.+.+..++
T Consensus      1112 AKAql~~G~~kEAIdsYiK-----AdD~say~eVa~~~~~--------------------lGkyEEAIeyL~mArk~~~e 1166 (1630)
T 1xi4_A         1112 AKAQLQKGMVKEAIDSYIK-----ADDPSSYMEVVQAANT--------------------SGNWEELVKYLQMARKKARE 1166 (1630)
T ss_pred             HHHHHhCCCHHHHHHHHHh-----cCChHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHhhccc
Confidence            4556666777777777633     2566666665555555                    47777777777666654422


Q ss_pred             ---------------------------CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 029199           83 ---------------------------NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHND  135 (197)
Q Consensus        83 ---------------------------~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~  135 (197)
                                                 +...+.++|..++. .|++++|..+|.++        ..|..++.+|.++|+ 
T Consensus      1167 ~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~-eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge- 1236 (1630)
T 1xi4_A         1167 SYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYD-EKMYDAAKLLYNNV--------SNFGRLASTLVHLGE- 1236 (1630)
T ss_pred             ccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHh-cCCHHHHHHHHHhh--------hHHHHHHHHHHHhCC-
Confidence                                       22334456655555 66677777766665        356666666666663 


Q ss_pred             HHHHHHHHHHHHHhCC-------------------------CCHHHHHHHHHHHHHcCCccccccCCCc
Q 029199          136 QDRAATYYERAVHASP-------------------------EDSHVHASYAGFLWETEEDNDECDAPSE  179 (197)
Q Consensus       136 ~~~A~~~~~~al~~~p-------------------------~~~~~~~~la~~~~~~g~~~ea~~~~~~  179 (197)
                      +++|++++++|....+                         .+++.+..++..|...|.++++...++.
T Consensus      1237 ~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~ 1305 (1630)
T 1xi4_A         1237 YQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEA 1305 (1630)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            6777777766633222                         1333444555666666666666666654

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.83  E-value=2.1e-08  Score=83.03  Aligned_cols=132  Identities=11%  Similarity=-0.107  Sum_probs=97.7

Q ss_pred             HHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHH--HHHHhCCCCHHHH
Q 029199           10 VKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYK--KMVEENPGNPLFL   87 (197)
Q Consensus        10 ~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~--~al~~~P~~~~~~   87 (197)
                      ....+|+..|..+++.+|+.+..+...+++........     |.       ...........++  .++..+|.++.++
T Consensus       213 ~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~-----~~-------~~~~~~~l~~a~~a~~a~~~~~~~a~~~  280 (372)
T 3ly7_A          213 KSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQH-----PL-------DEKQLAALNTEIDNIVTLPELNNLSIIY  280 (372)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHS-----CC-------CHHHHHHHHHHHHHHHTCGGGTTCHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccC-----CC-------chhhHHHHHHHHHHHHhcccCCcCHHHH
Confidence            44689999999999999999999887777643210000     00       0011111112222  2336789999999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 029199           88 SNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHV  156 (197)
Q Consensus        88 ~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~  156 (197)
                      ..++..+.. .|++++|+..+++|+.++| +..++..+|.++...|+ +++|++.|++|++++|..+..
T Consensus       281 ~alal~~l~-~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~-~~eA~e~~~~AlrL~P~~~t~  346 (372)
T 3ly7_A          281 QIKAVSALV-KGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGM-NREAADAYLTAFNLRPGANTL  346 (372)
T ss_dssp             HHHHHHHHH-HTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHSCSHHHH
T ss_pred             HHHHHHHHh-CCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhcCCCcChH
Confidence            999966665 7999999999999999997 47788899999888774 999999999999999987643

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=98.79  E-value=3.8e-09  Score=94.34  Aligned_cols=117  Identities=13%  Similarity=0.151  Sum_probs=100.2

Q ss_pred             CCCHHHHHHHHHHHHHh-----------CCC-----------CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCH
Q 029199           63 GGDSQGVEEYYKKMVEE-----------NPG-----------NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILA-DPGDG  119 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~-----------~P~-----------~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l-~P~~~  119 (197)
                      .|++++|.+.|++++..           .|.           ...+|..++.+..+ .|..+.|+..|.+|++. .+...
T Consensus       391 ~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR-~~~l~~AR~vf~~A~~~~~~~~~  469 (679)
T 4e6h_A          391 NTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKR-IQGLAASRKIFGKCRRLKKLVTP  469 (679)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH-HHCHHHHHHHHHHHHHTGGGSCT
T ss_pred             hCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhcCCCCh
Confidence            48899999999999975           253           45689999977776 88999999999999987 55567


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          120 EILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       120 ~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      .++...+.+.+..+++.+.|...|+++++..|+++..|..++.+....|+.+.+...|++.
T Consensus       470 ~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lfera  530 (679)
T 4e6h_A          470 DIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESS  530 (679)
T ss_dssp             HHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            7888888777777766899999999999999999999999999999999999998888884

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.75  E-value=1.6e-08  Score=81.00  Aligned_cols=102  Identities=15%  Similarity=0.049  Sum_probs=82.7

Q ss_pred             hCCCCHHHHHHHHHHHHHh----cC------CHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHH----cCCHHHHHHH
Q 029199           79 ENPGNPLFLSNYAQFLYQS----KQ------DLPKAEEYYSRAILADPG--DGEILSQYAKLVWEL----HNDQDRAATY  142 (197)
Q Consensus        79 ~~P~~~~~~~~la~~l~~~----~g------~~~~A~~~~~~al~l~P~--~~~~~~~lg~~l~~~----~~~~~~A~~~  142 (197)
                      .+|+++++++=.|......    .|      ...+|...+++++++||+  +..+|..+|.+|...    +++.++|.++
T Consensus       147 ~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~  226 (301)
T 3u64_A          147 CTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTA  226 (301)
T ss_dssp             CCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHH
T ss_pred             cCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHH
Confidence            3566777666555333221    12      468899999999999999  788999999998885    4579999999


Q ss_pred             HHHHHHhCCCC-HHHHHHHHHHHHHc-CCccccccCCCcc
Q 029199          143 YERAVHASPED-SHVHASYAGFLWET-EEDNDECDAPSEL  180 (197)
Q Consensus       143 ~~~al~~~p~~-~~~~~~la~~~~~~-g~~~ea~~~~~~~  180 (197)
                      |++||+++|+. ..+++.+|..+... |+++++...+++.
T Consensus       227 ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kA  266 (301)
T 3u64_A          227 FEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRA  266 (301)
T ss_dssp             HHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            99999999975 99999999999885 9999998888774

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.74  E-value=4.9e-09  Score=87.06  Aligned_cols=171  Identities=9%  Similarity=-0.057  Sum_probs=117.6

Q ss_pred             chhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCH
Q 029199            5 ALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNP   84 (197)
Q Consensus         5 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~   84 (197)
                      .+-+.|++.+|+..|...++..|.........+..........   ..-...+..+...|++++|+++|+++++..+...
T Consensus        13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~   89 (434)
T 4b4t_Q           13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQE---TSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA   89 (434)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHH---HHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred             HHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence            3556788999999999998888876554332222100000000   0000001122335999999999999998766543


Q ss_pred             H------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Q 029199           85 L------FLSNYAQFLYQSKQDLPKAEEYYSRAILADP------GDGEILSQYAKLVWELHNDQDRAATYYERAVHA---  149 (197)
Q Consensus        85 ~------~~~~la~~l~~~~g~~~~A~~~~~~al~l~P------~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~---  149 (197)
                      .      +...++.++.. .|++++|+..+++++...+      .-..++.++|.++...|+ +++|+.++++++..   
T Consensus        90 ~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~l~~~~~~~~~  167 (434)
T 4b4t_Q           90 KSKTVKVLKTLIEKFEQV-PDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQ-YKDSLALINDLLREFKK  167 (434)
T ss_dssp             HHHHHHHHHHHHHHHCSC-CSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHTT
T ss_pred             chHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccC-hHHHHHHHHHHHHHHHh
Confidence            2      44566744444 8899999999999987643      336788899999999885 99999999999876   


Q ss_pred             ---CCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          150 ---SPEDSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       150 ---~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                         .|....++...+.++..+|++++|...+++.
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a  201 (434)
T 4b4t_Q          168 LDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAA  201 (434)
T ss_dssp             SSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence               2445678999999999999999998777663

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.72  E-value=9.1e-08  Score=90.41  Aligned_cols=102  Identities=15%  Similarity=0.112  Sum_probs=67.5

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------------------------
Q 029199           63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGD------------------------  118 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~------------------------  118 (197)
                      .|++++|+.+|.++     +++..|..++.++.. .|++++|+++|..|.+.+|+.                        
T Consensus      1118 ~G~~kEAIdsYiKA-----dD~say~eVa~~~~~-lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~ 1191 (1630)
T 1xi4_A         1118 KGMVKEAIDSYIKA-----DDPSSYMEVVQAANT-SGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFIN 1191 (1630)
T ss_pred             CCCHHHHHHHHHhc-----CChHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHh
Confidence            48888888888775     778888888877666 888888888887777665331                        


Q ss_pred             ---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCc
Q 029199          119 ---GEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSE  179 (197)
Q Consensus       119 ---~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~  179 (197)
                         ...+.++|..+...|+ +++|..+|.++        ..|..++.++.++|++++|++.+++
T Consensus      1192 ~~n~ad~~~iGd~le~eg~-YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarK 1246 (1630)
T 1xi4_A         1192 GPNNAHIQQVGDRCYDEKM-YDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARK 1246 (1630)
T ss_pred             CCCHHHHHHHHHHHHhcCC-HHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHH
Confidence               2234445555555453 56666666654        2556666666666666666665555

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.71  E-value=1.2e-08  Score=84.68  Aligned_cols=155  Identities=10%  Similarity=-0.095  Sum_probs=118.3

Q ss_pred             CcchhHHHHHHHHhhhcCcccccCCCChhh------HHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHH
Q 029199            3 GTALSEEVKVMEALWNAGFEQERGTVGQEM------YLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKM   76 (197)
Q Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a   76 (197)
                      |.+|.+.|++.+|+..+....+..+.-+..      ....|.....                    .|++++|+.+++++
T Consensus        62 ~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------------------~~~~~~a~~~~~~~  121 (434)
T 4b4t_Q           62 GQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQV--------------------PDSLDDQIFVCEKS  121 (434)
T ss_dssp             HHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSC--------------------CSCHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhC--------------------CCCHHHHHHHHHHH
Confidence            456788888899988887776654443222      1122332222                    48999999999999


Q ss_pred             HHhCC------CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 029199           77 VEENP------GNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILA------DPGDGEILSQYAKLVWELHNDQDRAATYYE  144 (197)
Q Consensus        77 l~~~P------~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l------~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~  144 (197)
                      +...+      ....++.++|.++.. .|++++|+..+++++..      .|....++.++|.++..++ ++++|..+|+
T Consensus       122 ~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~  199 (434)
T 4b4t_Q          122 IEFAKREKRVFLKHSLSIKLATLHYQ-KKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLR-NLAKSKASLT  199 (434)
T ss_dssp             HHHHHHSSCCSSHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTT-CHHHHHHHHH
T ss_pred             HHHHHHhCccHHHHHHHHHHHHHHHH-ccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhC-cHHHHHHHHH
Confidence            87643      336788999988887 99999999999999876      3455689999999999988 5999999999


Q ss_pred             HHHHhC---CCC----HHHHHHHHHHHHHcCCccccccCCCc
Q 029199          145 RAVHAS---PED----SHVHASYAGFLWETEEDNDECDAPSE  179 (197)
Q Consensus       145 ~al~~~---p~~----~~~~~~la~~~~~~g~~~ea~~~~~~  179 (197)
                      +++.+.   ++.    ...+..+|.++...|++++|...|..
T Consensus       200 ~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~  241 (434)
T 4b4t_Q          200 AARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFE  241 (434)
T ss_dssp             HHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred             HHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            999874   333    24577888899999999999766655

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.69  E-value=5.9e-08  Score=70.63  Aligned_cols=97  Identities=10%  Similarity=0.052  Sum_probs=78.9

Q ss_pred             HHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhC-C-CCHHHHHHHH
Q 029199           14 EALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEEN-P-GNPLFLSNYA   91 (197)
Q Consensus        14 ~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P-~~~~~~~~la   91 (197)
                      .+-..|......+|.+++..|..|+++-....                 .++..+++..++++++.+ | +..+.++++|
T Consensus        16 ~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~-----------------~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LA   78 (152)
T 1pc2_A           16 KFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKY-----------------NDDIRKGIVLLEELLPKGSKEEQRDYVFYLA   78 (152)
T ss_dssp             HHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSS-----------------HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCCCcHHHHHHHHHHHHcCCC-----------------HHHHHHHHHHHHHHHhcCCccchHHHHHHHH
Confidence            33344444445678899999999999866311                 237789999999999999 7 6789999999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 029199           92 QFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKL  128 (197)
Q Consensus        92 ~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~  128 (197)
                      ..+++ .+++++|+++++++|+++|+|..+....-.+
T Consensus        79 v~~~k-l~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~i  114 (152)
T 1pc2_A           79 VGNYR-LKEYEKALKYVRGLLQTEPQNNQAKELERLI  114 (152)
T ss_dssp             HHHHH-TSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHH-ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            88877 9999999999999999999999998776544

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.68  E-value=6.9e-08  Score=81.85  Aligned_cols=103  Identities=13%  Similarity=-0.056  Sum_probs=82.8

Q ss_pred             CCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHH
Q 029199           63 GGDSQGVEEYYKKMVEE-----NPGNP---LFLSNYAQFLYQSKQDLPKAEEYYSRAILA-----DPGDG---EILSQYA  126 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~-----~P~~~---~~~~~la~~l~~~~g~~~~A~~~~~~al~l-----~P~~~---~~~~~lg  126 (197)
                      .|++++|+..|++++++     .|+++   ..+.++|.++.. +|++++|+.+++++|++     -|++|   ..++++|
T Consensus       300 ~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~-~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa  378 (429)
T 3qwp_A          300 HWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACIN-LGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVG  378 (429)
T ss_dssp             TTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHH
Confidence            58999999999999975     35554   567889977777 99999999999999977     35555   5688999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHH---HHHHHHHHHc
Q 029199          127 KLVWELHNDQDRAATYYERAVHA-----SPEDSHVH---ASYAGFLWET  167 (197)
Q Consensus       127 ~~l~~~~~~~~~A~~~~~~al~~-----~p~~~~~~---~~la~~~~~~  167 (197)
                      .+|..+|+ +++|+.+|++|+++     -|++|.+.   .+++.+..++
T Consensus       379 ~~~~~~g~-~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~  426 (429)
T 3qwp_A          379 KLQLHQGM-FPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI  426 (429)
T ss_dssp             HHHHHTTC-HHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCC-HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence            99999885 99999999999987     38887654   5566665543

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.64  E-value=2e-07  Score=63.21  Aligned_cols=65  Identities=17%  Similarity=0.151  Sum_probs=58.6

Q ss_pred             CCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 029199           63 GGDSQGVEEYYKKMVEEN-------PGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKL  128 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~-------P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~  128 (197)
                      .|++..|+..|++|++..       +..+.++.+||.+++. +|++++|+..++++++++|+++.+..|++.+
T Consensus        18 ~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~-~g~~~~A~~~~~~al~l~P~~~~~~~n~~~~   89 (104)
T 2v5f_A           18 EADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQ-QGDLDKALLLTKKLLELDPEHQRANGNLKYF   89 (104)
T ss_dssp             TTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHhcCCCCHHHHhhHHHH
Confidence            599999999999999874       3568899999988887 9999999999999999999999999999843

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=98.56  E-value=2.3e-07  Score=78.73  Aligned_cols=108  Identities=9%  Similarity=-0.008  Sum_probs=89.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 029199           61 GSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAA  140 (197)
Q Consensus        61 ~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~  140 (197)
                      ...|++++|+++|+++     +++..|......+.. .|+++.|..+..+ +..+|++   ...+..+|...|+ +++|+
T Consensus       159 ~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~-~~ef~lA~~~~l~-L~~~ad~---l~~lv~~Yek~G~-~eEai  227 (449)
T 1b89_A          159 VHLGEYQAAVDGARKA-----NSTRTWKEVCFACVD-GKEFRLAQMCGLH-IVVHADE---LEELINYYQDRGY-FEELI  227 (449)
T ss_dssp             HTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHH-TTCHHHHHHTTTT-TTTCHHH---HHHHHHHHHHTTC-HHHHH
T ss_pred             HHhccHHHHHHHHHHc-----CCchhHHHHHHHHHH-cCcHHHHHHHHHH-HHhCHhh---HHHHHHHHHHCCC-HHHHH
Confidence            4469999999999999     588999998878887 9999999888876 3355555   4467777888775 99999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHc--CCccccccCCCc
Q 029199          141 TYYERAVHASPEDSHVHASYAGFLWET--EEDNDECDAPSE  179 (197)
Q Consensus       141 ~~~~~al~~~p~~~~~~~~la~~~~~~--g~~~ea~~~~~~  179 (197)
                      .++++++.+++.+..++..+|.++.+-  ++..|.++.|..
T Consensus       228 ~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~  268 (449)
T 1b89_A          228 TMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWS  268 (449)
T ss_dssp             HHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHST
T ss_pred             HHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            999999999999999999999999875  466677766665

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=98.52  E-value=2.8e-07  Score=82.31  Aligned_cols=141  Identities=10%  Similarity=0.085  Sum_probs=103.2

Q ss_pred             hcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHH-HHHHHHHHhCCCCHHHHHHHHHHHHH
Q 029199           18 NAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVE-EYYKKMVEENPGNPLFLSNYAQFLYQ   96 (197)
Q Consensus        18 ~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~-~~~~~al~~~P~~~~~~~~la~~l~~   96 (197)
                      .|..++...|..+.+|+..+--+...                    |+.++|. +.|++++...|.+...|..++.+...
T Consensus       331 ~Ye~aL~~~p~~~~lW~~ya~~~~~~--------------------~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~  390 (679)
T 4e6h_A          331 VYMQAAQHVCFAPEIWFNMANYQGEK--------------------NTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYEL  390 (679)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHHH--------------------SCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHhc--------------------CcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            34444555777888888776554442                    5556786 88888888888888888888866555


Q ss_pred             hcCCHHHHHHHHHHHHHh-----------CCC-----------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC
Q 029199           97 SKQDLPKAEEYYSRAILA-----------DPG-----------DGEILSQYAKLVWELHNDQDRAATYYERAVHA-SPED  153 (197)
Q Consensus        97 ~~g~~~~A~~~~~~al~l-----------~P~-----------~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~-~p~~  153 (197)
                       .|++++|...|++++..           .|.           .+.+|..++.+....++ .+.|...|.+|++. .+..
T Consensus       391 -~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~-l~~AR~vf~~A~~~~~~~~  468 (679)
T 4e6h_A          391 -NTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQG-LAASRKIFGKCRRLKKLVT  468 (679)
T ss_dssp             -TTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHTGGGSC
T ss_pred             -hCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhcCCCC
Confidence             88888898888888874           253           34578888888777775 88888899998887 4455


Q ss_pred             HHHHHHHHHHHHHcCC-ccccccCCCcc
Q 029199          154 SHVHASYAGFLWETEE-DNDECDAPSEL  180 (197)
Q Consensus       154 ~~~~~~la~~~~~~g~-~~ea~~~~~~~  180 (197)
                      +.+|...+.+-.+.++ .+.|...|+..
T Consensus       469 ~~lyi~~A~lE~~~~~d~e~Ar~ife~~  496 (679)
T 4e6h_A          469 PDIYLENAYIEYHISKDTKTACKVLELG  496 (679)
T ss_dssp             THHHHHHHHHHHTTTSCCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            6777777777777654 67777776663

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.51  E-value=2.1e-07  Score=80.13  Aligned_cols=83  Identities=11%  Similarity=0.061  Sum_probs=71.8

Q ss_pred             hcCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHH---HHHHH
Q 029199           97 SKQDLPKAEEYYSRAILA-----DPGDG---EILSQYAKLVWELHNDQDRAATYYERAVHAS-----PEDSH---VHASY  160 (197)
Q Consensus        97 ~~g~~~~A~~~~~~al~l-----~P~~~---~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~-----p~~~~---~~~~l  160 (197)
                      .+|++++|+..|+++|++     .|++|   .++.++|.+|..+|+ +++|+.+++++|++.     |++|.   .+.++
T Consensus       321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~-~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL  399 (490)
T 3n71_A          321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQA-YEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA  399 (490)
T ss_dssp             TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred             hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            489999999999999987     35555   578899999999885 999999999999873     66765   48899


Q ss_pred             HHHHHHcCCccccccCCCcc
Q 029199          161 AGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       161 a~~~~~~g~~~ea~~~~~~~  180 (197)
                      |.+|..+|++++|+..+++.
T Consensus       400 a~~~~~~G~~~eA~~~~~~A  419 (490)
T 3n71_A          400 GLTNWHAGHIEVGHGMICKA  419 (490)
T ss_dssp             HHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHH
Confidence            99999999999999888874

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.50  E-value=2.1e-06  Score=60.36  Aligned_cols=99  Identities=10%  Similarity=0.047  Sum_probs=84.4

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHhC-C-CCHHHHHHHHHHHHHHcCCHHHH
Q 029199           65 DSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPK---AEEYYSRAILAD-P-GDGEILSQYAKLVWELHNDQDRA  139 (197)
Q Consensus        65 ~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~---A~~~~~~al~l~-P-~~~~~~~~lg~~l~~~~~~~~~A  139 (197)
                      ....+.+.|++.+..++....+-+++|..+.. ..+...   ++.+++..++.+ | ..-+.++.+|..++++| +|++|
T Consensus        16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~-S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg-~Y~~A   93 (126)
T 1nzn_A           16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVR-TRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLK-EYEKA   93 (126)
T ss_dssp             HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTT-SSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTT-CHHHH
T ss_pred             HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhh-hHHHH
Confidence            34677888999999999999999999977776 776655   999999999887 5 67789999999999988 59999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHH
Q 029199          140 ATYYERAVHASPEDSHVHASYAGFLW  165 (197)
Q Consensus       140 ~~~~~~al~~~p~~~~~~~~la~~~~  165 (197)
                      +.+++..|++.|+|..+..-...+-.
T Consensus        94 ~~~~~~lL~~eP~n~QA~~Lk~~i~~  119 (126)
T 1nzn_A           94 LKYVRGLLQTEPQNNQAKELERLIDK  119 (126)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            99999999999999998766655543

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.49  E-value=1.3e-07  Score=80.18  Aligned_cols=82  Identities=7%  Similarity=0.020  Sum_probs=70.9

Q ss_pred             cCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHH---HHHHHH
Q 029199           98 KQDLPKAEEYYSRAILA-----DPGDG---EILSQYAKLVWELHNDQDRAATYYERAVHAS-----PEDSH---VHASYA  161 (197)
Q Consensus        98 ~g~~~~A~~~~~~al~l-----~P~~~---~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~-----p~~~~---~~~~la  161 (197)
                      .|++++|+..|+++|++     .|++|   ..+.++|.+|..+|+ +++|+.+++++|++.     |++|.   .+.++|
T Consensus       311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~-~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQD-WEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcC-HHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            57899999999999985     56666   457899999999885 999999999999873     66665   488999


Q ss_pred             HHHHHcCCccccccCCCcc
Q 029199          162 GFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       162 ~~~~~~g~~~ea~~~~~~~  180 (197)
                      .+|..+|++++|+..+++.
T Consensus       390 ~~~~~qg~~~eA~~~~~~A  408 (433)
T 3qww_A          390 RLYMGLENKAAGEKALKKA  408 (433)
T ss_dssp             HHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHhccCHHHHHHHHHHH
Confidence            9999999999999888874

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.43  E-value=1.4e-06  Score=74.98  Aligned_cols=141  Identities=9%  Similarity=0.129  Sum_probs=111.6

Q ss_pred             hhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH---
Q 029199           17 WNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQF---   93 (197)
Q Consensus        17 ~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~---   93 (197)
                      ..|..++...|..+.+|+..+--+..                    .|+.++|...|++++.. |.+...|..++.+   
T Consensus       200 ~~ye~al~~~p~~~~lW~~ya~~~~~--------------------~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~  258 (493)
T 2uy1_A          200 FIHNYILDSFYYAEEVYFFYSEYLIG--------------------IGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDE  258 (493)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTC
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcch
Confidence            34444555668888888887655444                    38899999999999999 9987766655532   


Q ss_pred             -------------------------------------HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 029199           94 -------------------------------------LYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQ  136 (197)
Q Consensus        94 -------------------------------------l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~  136 (197)
                                                           ... .+..+.|...|++| +..+....+|...+.+.+..+++.
T Consensus       259 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r-~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~  336 (493)
T 2uy1_A          259 EAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLK-KRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSR  336 (493)
T ss_dssp             THHHHHHHHHTC----------CHHHHHHHHHHHHHHHHH-HHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCS
T ss_pred             hHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHH-cCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCCh
Confidence                                                 122 45688899999999 544446778888888888778678


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          137 DRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       137 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      +.|...|+++++..|+++..|..++......|+.+.+...|+++
T Consensus       337 ~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~  380 (493)
T 2uy1_A          337 ATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL  380 (493)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999988888775

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.31  E-value=7.6e-07  Score=75.40  Aligned_cols=86  Identities=8%  Similarity=-0.093  Sum_probs=72.9

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHH---H
Q 029199           93 FLYQSKQDLPKAEEYYSRAILA-----DPGDG---EILSQYAKLVWELHNDQDRAATYYERAVHAS-----PEDSH---V  156 (197)
Q Consensus        93 ~l~~~~g~~~~A~~~~~~al~l-----~P~~~---~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~-----p~~~~---~  156 (197)
                      -+.. +|++++|+..|++++++     .|+++   .++.++|.+|..+|+ +++|+.+++++|.+.     |++|.   .
T Consensus       296 ~~~~-~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~-~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~  373 (429)
T 3qwp_A          296 ELKA-HWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGL-LEEALFYGTRTMEPYRIFFPGSHPVRGVQ  373 (429)
T ss_dssp             HHHH-TTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred             HHHh-hccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence            3445 89999999999999976     46665   568889999999885 999999999999773     66765   4


Q ss_pred             HHHHHHHHHHcCCccccccCCCcc
Q 029199          157 HASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       157 ~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      ++++|.+|..+|++++|+..+++.
T Consensus       374 l~nLa~~~~~~g~~~eA~~~~~~A  397 (429)
T 3qwp_A          374 VMKVGKLQLHQGMFPQAMKNLRLA  397 (429)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHH
Confidence            889999999999999998888774

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=97.94  E-value=9.6e-05  Score=63.48  Aligned_cols=110  Identities=11%  Similarity=0.008  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-----------------
Q 029199           66 SQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKL-----------------  128 (197)
Q Consensus        66 ~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~-----------------  128 (197)
                      .+.....|++++...|..+.+|..++.++.. .|+.++|...|++|+.. |.+...|..++..                 
T Consensus       195 ~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~-~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~  272 (493)
T 2uy1_A          195 ESRMHFIHNYILDSFYYAEEVYFFYSEYLIG-IGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMG  272 (493)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC--
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhh
Confidence            4567789999999999999999999988776 99999999999999999 9988777665543                 


Q ss_pred             -----------------------HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CccccccCCCc
Q 029199          129 -----------------------VWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETE-EDNDECDAPSE  179 (197)
Q Consensus       129 -----------------------l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~ea~~~~~~  179 (197)
                                             +...++ .+.|...|++| ...+....+|...+.+-...+ +.+.|...|+.
T Consensus       273 ~~~~~~~~~~~~~~~lw~~y~~~~~r~~~-~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~  345 (493)
T 2uy1_A          273 EAESAEKVFSKELDLLRINHLNYVLKKRG-LELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSS  345 (493)
T ss_dssp             --------CHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHH
T ss_pred             ccchhhhhcccccHHHHHHHHHHHHHcCC-HHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence                                   223454 78888899998 433345677777777776666 47777666665

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=97.92  E-value=7.2e-05  Score=64.44  Aligned_cols=162  Identities=15%  Similarity=0.039  Sum_probs=113.0

Q ss_pred             hhHHHHHHHHhhhcCcccccCCC-ChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhC--CC
Q 029199            6 LSEEVKVMEALWNAGFEQERGTV-GQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEEN--PG   82 (197)
Q Consensus         6 ~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--P~   82 (197)
                      +...|++.+|+..|+.+.+.+-. +...|.. -+  ..|+...        ........++.++|.+.|++.....  | 
T Consensus        36 c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~-Li--~~c~~~~--------~~~~~~~~~~l~~A~~lf~~M~~~G~~P-  103 (501)
T 4g26_A           36 CSKKGDVLEALRLYDEARRNGVQLSQYHYNV-LL--YVCSLAE--------AATESSPNPGLSRGFDIFKQMIVDKVVP-  103 (501)
T ss_dssp             TTTSCCHHHHHHHHHHHHHHTCCCCHHHHHH-HH--HHHTTCC--------CCSSSSCCHHHHHHHHHHHHHHHTTCCC-
T ss_pred             HHhCCCHHHHHHHHHHHHHcCCCCCHhHHHH-HH--HHHHhCC--------chhhhhhcchHHHHHHHHHHHHHhCCCC-
Confidence            34567788888888877765321 2222211 11  1121100        0011122467899999999987753  5 


Q ss_pred             CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Q 029199           83 NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILAD-PGDGEILSQYAKLVWELHNDQDRAATYYERAVHAS-PEDSHVHASY  160 (197)
Q Consensus        83 ~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l  160 (197)
                      |...|+.+-..+.+ .|+.++|++.|++..+.. +-|...+..+-..|.+.| +.++|.+.|+...+.. ..+...|..+
T Consensus       104 d~~tyn~lI~~~~~-~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g-~~~~A~~l~~~M~~~G~~Pd~~ty~~L  181 (501)
T 4g26_A          104 NEATFTNGARLAVA-KDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKG-DADKAYEVDAHMVESEVVPEEPELAAL  181 (501)
T ss_dssp             CHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred             CHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCC-CHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence            55566767767776 899999999999988763 235666777777888877 5999999999998764 3368899999


Q ss_pred             HHHHHHcCCccccccCCCccc
Q 029199          161 AGFLWETEEDNDECDAPSELD  181 (197)
Q Consensus       161 a~~~~~~g~~~ea~~~~~~~~  181 (197)
                      -..+.+.|+.++|.+.++++-
T Consensus       182 i~~~~~~g~~d~A~~ll~~Mr  202 (501)
T 4g26_A          182 LKVSMDTKNADKVYKTLQRLR  202 (501)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHhhCCCHHHHHHHHHHHH
Confidence            999999999999999998873

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=97.89  E-value=9.3e-05  Score=53.46  Aligned_cols=122  Identities=13%  Similarity=0.070  Sum_probs=96.8

Q ss_pred             cCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCH------HHHHHHHHHHHHhCCC--------CHHHHHHH
Q 029199           25 RGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDS------QGVEEYYKKMVEENPG--------NPLFLSNY   90 (197)
Q Consensus        25 ~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~------~~A~~~~~~al~~~P~--------~~~~~~~l   90 (197)
                      ..|+|++.|+.--.-+..-                    |+.      ++-+..|++|+..-|-        ....|..+
T Consensus         8 ~~p~~yd~W~~yl~llE~~--------------------g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrY   67 (161)
T 4h7y_A            8 MMANNPEDWLSLLLKLEKN--------------------SVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRF   67 (161)
T ss_dssp             --CCSHHHHHHHHHHHHHH--------------------TCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHH
T ss_pred             eCCCCHHHHHHHHHHHHHc--------------------CCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHH
Confidence            4788999888877666652                    444      7888999999988765        35678888


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc
Q 029199           91 AQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEED  170 (197)
Q Consensus        91 a~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  170 (197)
                      + .+.. .++.++|.+.|+.++.+....+-+|..+|.+....| +.++|.+.+.+|+...|...+. ...+..-.+.|+.
T Consensus        68 A-~~~e-i~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqg-nl~kARkILg~AiG~~~k~~~~-le~a~~nl~~~~~  143 (161)
T 4h7y_A           68 A-ELKA-IQEPDDARDYFQMARANCKKFAFVHISFAQFELSQG-NVKKSKQLLQKAVERGAVPLEM-LEIALRNLNLQKK  143 (161)
T ss_dssp             H-HHHH-HHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTTCBCHHH-HHHHHHHHHTTCS
T ss_pred             H-HHHH-hcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcc-cHHHHHHHHHHHhccCCCcHHH-HHHHHHhhhcCCC
Confidence            8 5455 799999999999999999889999999999999977 4999999999999999986554 4455555556654

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=97.88  E-value=3.3e-05  Score=55.82  Aligned_cols=99  Identities=22%  Similarity=0.173  Sum_probs=84.4

Q ss_pred             HhCCCCHHHHHHHHHHHHHhcCCH------HHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHHcCCHHHHHHHH
Q 029199           78 EENPGNPLFLSNYAQFLYQSKQDL------PKAEEYYSRAILADPG--------DGEILSQYAKLVWELHNDQDRAATYY  143 (197)
Q Consensus        78 ~~~P~~~~~~~~la~~l~~~~g~~------~~A~~~~~~al~l~P~--------~~~~~~~lg~~l~~~~~~~~~A~~~~  143 (197)
                      -+.|++++.|..+...+-. .|+.      ++-++.|++|+..-|-        ...+|..++.. ...+ |.++|.+.|
T Consensus         7 ~~~p~~yd~W~~yl~llE~-~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~-D~d~aR~vy   83 (161)
T 4h7y_A            7 MMMANNPEDWLSLLLKLEK-NSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQ-EPDDARDYF   83 (161)
T ss_dssp             ---CCSHHHHHHHHHHHHH-HTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHH-CGGGCHHHH
T ss_pred             eeCCCCHHHHHHHHHHHHH-cCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhc-CHHHHHHHH
Confidence            4689999999999966666 7998      8999999999998774        45778888855 5666 699999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCc
Q 029199          144 ERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSE  179 (197)
Q Consensus       144 ~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~  179 (197)
                      +.++.+....+.+|...|.+-.++|+...|...+++
T Consensus        84 ~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~  119 (161)
T 4h7y_A           84 QMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQK  119 (161)
T ss_dssp             HHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            999999888999999999999999999999888887

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.86  E-value=3.8e-05  Score=56.34  Aligned_cols=107  Identities=15%  Similarity=0.173  Sum_probs=55.2

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHH
Q 029199           64 GDSQGVEEYYKKMVEENPGNPL---------FLSNYAQFLYQSKQDLPKAEEYYSRAILAD---PGDGEILSQYAKLVWE  131 (197)
Q Consensus        64 g~~~~A~~~~~~al~~~P~~~~---------~~~~la~~l~~~~g~~~~A~~~~~~al~l~---P~~~~~~~~lg~~l~~  131 (197)
                      |.|+.|+-....++.+..+++.         ++..+|..++. .++|..|...|++||++.   |+++......+.   .
T Consensus        34 ~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~-~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~---~  109 (167)
T 3ffl_A           34 GLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFH-DKEYRNAVSKYTMALQQKKALSKTSKVRPSTGN---S  109 (167)
T ss_dssp             TCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHCC----------------
T ss_pred             hhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHHHHHHhcCCCccccccc---c
Confidence            5666666666665554333222         45556666666 666666666666665542   222221111110   0


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcccccc
Q 029199          132 LHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSELDSNT  184 (197)
Q Consensus       132 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~~~~~  184 (197)
                       .. ...       ... .+.+.++.|..+.|+.++|++++|+..++.+|.-.
T Consensus       110 -ss-~p~-------s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~  152 (167)
T 3ffl_A          110 -AS-TPQ-------SQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQ  152 (167)
T ss_dssp             ----------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGG
T ss_pred             -CC-Ccc-------ccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchh
Confidence             00 000       011 13345778888888888888888888877776443

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.79  E-value=7e-05  Score=52.56  Aligned_cols=87  Identities=10%  Similarity=0.087  Sum_probs=69.9

Q ss_pred             ccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHhcCCH
Q 029199           24 ERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEEN-P-GNPLFLSNYAQFLYQSKQDL  101 (197)
Q Consensus        24 ~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P-~~~~~~~~la~~l~~~~g~~  101 (197)
                      ..++.++...|..++++-.-..                 ..+..+++..++..++.+ | ..-+.++.||..+++ .|+|
T Consensus        29 ~~~~~s~~~~F~yAw~Lv~S~~-----------------~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yk-lg~Y   90 (126)
T 1nzn_A           29 AAGSVSKSTQFEYAWCLVRTRY-----------------NDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR-LKEY   90 (126)
T ss_dssp             HHSCCCHHHHHHHHHHHTTSSS-----------------HHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH-TTCH
T ss_pred             ccCCCcHHHHHHHHHHHHcCCC-----------------HHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH-hhhH
Confidence            3467788888888888765210                 234566999999999987 5 567788999978887 9999


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 029199          102 PKAEEYYSRAILADPGDGEILSQYAKL  128 (197)
Q Consensus       102 ~~A~~~~~~al~l~P~~~~~~~~lg~~  128 (197)
                      ++|+.+++..|+.+|+|..+......+
T Consensus        91 ~~A~~~~~~lL~~eP~n~QA~~Lk~~i  117 (126)
T 1nzn_A           91 EKALKYVRGLLQTEPQNNQAKELERLI  117 (126)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            999999999999999999998766544

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.79  E-value=8.9e-05  Score=54.38  Aligned_cols=89  Identities=9%  Similarity=0.088  Sum_probs=53.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 029199           61 GSGGDSQGVEEYYKKMVEEN---PGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQD  137 (197)
Q Consensus        61 ~~~g~~~~A~~~~~~al~~~---P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~  137 (197)
                      ...|+|.+|...|+++|+..   |..+.....++    . ......       ... .+.+.++.+.++.|+.++++ ++
T Consensus        74 f~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~----~-~ss~p~-------s~~-~~~e~Elkykia~C~~~l~~-~~  139 (167)
T 3ffl_A           74 FHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTG----N-SASTPQ-------SQC-LPSEIEVKYKLAECYTVLKQ-DK  139 (167)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHCC--------------------------------C-CCCHHHHHHHHHHHHHHTTC-HH
T ss_pred             HcccHHHHHHHHHHHHHHHHHHHhcCCCcccccc----c-cCCCcc-------ccc-ccchHHHHHHHHHHHHHHCC-HH
Confidence            44699999999999997753   33333221122    0 111111       112 25577899999999999996 89


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 029199          138 RAATYYERAVHASPEDSHVHASYAGFL  164 (197)
Q Consensus       138 ~A~~~~~~al~~~p~~~~~~~~la~~~  164 (197)
                      +|+..++..-. .-..+.+-..+|..|
T Consensus       140 ~Ai~~Le~Ip~-k~Rt~kvnm~LakLy  165 (167)
T 3ffl_A          140 DAIAILDGIPS-RQRTPKINMLLANLY  165 (167)
T ss_dssp             HHHHHHHTSCG-GGCCHHHHHHHHHHC
T ss_pred             HHHHHHhcCCc-hhcCHHHHHHHHHHh
Confidence            99998876522 234677888888765

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.78  E-value=0.0017  Score=46.36  Aligned_cols=100  Identities=12%  Similarity=-0.034  Sum_probs=78.1

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHcCCHHHH
Q 029199           64 GDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQ---DLPKAEEYYSRAILADP-GDGEILSQYAKLVWELHNDQDRA  139 (197)
Q Consensus        64 g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g---~~~~A~~~~~~al~l~P-~~~~~~~~lg~~l~~~~~~~~~A  139 (197)
                      .++....+.|++-.. ++-.+..-+++|.++.. ..   +..+++.+++..++.+| ..-+.++.+|..+++++ +|++|
T Consensus        20 eeL~~lr~qY~~E~~-~~vs~~t~F~YAw~Lv~-S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~-~Y~~A   96 (144)
T 1y8m_A           20 QQLEILRQQVVSEGG-PTATIQSRFNYAWGLIK-STDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLG-EYSMA   96 (144)
T ss_dssp             HHHHHHHHHHHHTTS-TTSCHHHHHHHHHHHHH-SSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTT-CHHHH
T ss_pred             HHHHHHHHHHHHhcc-CCCcHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhh-hHHHH
Confidence            344455555554322 35678899999977776 55   34589999999999998 56789999999999988 59999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 029199          140 ATYYERAVHASPEDSHVHASYAGFLWE  166 (197)
Q Consensus       140 ~~~~~~al~~~p~~~~~~~~la~~~~~  166 (197)
                      +.+.+..|++.|+|..+..-...+-.+
T Consensus        97 r~y~d~lL~~eP~n~QA~~Lk~~Ie~~  123 (144)
T 1y8m_A           97 KRYVDTLFEHERNNKQVGALKSMVEDK  123 (144)
T ss_dssp             HHHHHHHHHTCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            999999999999999987766655544

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.73  E-value=0.00054  Score=48.34  Aligned_cols=100  Identities=12%  Similarity=-0.040  Sum_probs=77.9

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHcCCHHHH
Q 029199           64 GDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQ---DLPKAEEYYSRAILADP-GDGEILSQYAKLVWELHNDQDRA  139 (197)
Q Consensus        64 g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g---~~~~A~~~~~~al~l~P-~~~~~~~~lg~~l~~~~~~~~~A  139 (197)
                      .++....+-|++-+ ...-.+.+-+++|..+.. ..   +..+++.+++..++.+| ..-+.++.+|..++++|+ |++|
T Consensus        21 eeL~~l~~qy~~E~-~~~vs~qt~F~yAw~Lv~-S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgd-Y~~A   97 (134)
T 3o48_A           21 QQLEILRQQVVSEG-GPTATIQSRFNYAWGLIK-STDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGE-YSMA   97 (134)
T ss_dssp             HHHHHHHHHHHHTT-GGGSCHHHHHHHHHHHHH-SSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTC-HHHH
T ss_pred             HHHHHHHHHHHHHh-CCCCChhhHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhh-HHHH
Confidence            44555566665533 223367888999977776 44   34579999999999999 457899999999999995 9999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 029199          140 ATYYERAVHASPEDSHVHASYAGFLWE  166 (197)
Q Consensus       140 ~~~~~~al~~~p~~~~~~~~la~~~~~  166 (197)
                      +.+.+..|++.|+|..+..-...+-.+
T Consensus        98 r~y~d~lL~~eP~N~QA~~Lk~~Ie~k  124 (134)
T 3o48_A           98 KRYVDTLFEHERNNKQVGALKSMVEDK  124 (134)
T ss_dssp             HHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence            999999999999999987766655444

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=97.33  E-value=0.0013  Score=59.17  Aligned_cols=117  Identities=11%  Similarity=0.093  Sum_probs=83.6

Q ss_pred             CCC-HHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHh--------CCCC----------HHHH
Q 029199           63 GGD-SQGVEEYYKKMVEENPGNPLFLSNYAQ-FLYQSKQDLPKAEEYYSRAILA--------DPGD----------GEIL  122 (197)
Q Consensus        63 ~g~-~~~A~~~~~~al~~~P~~~~~~~~la~-~l~~~~g~~~~A~~~~~~al~l--------~P~~----------~~~~  122 (197)
                      .++ ++.|+..+++..+.+|.....+..... ++.....+--+|+..+.++++-        .+.+          ...+
T Consensus       261 t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL  340 (754)
T 4gns_B          261 TPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLL  340 (754)
T ss_dssp             CGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHH
Confidence            345 688999999999999977654432211 1111123456677777777642        2333          2355


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          123 SQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       123 ~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      .--+.++...+ +++-|+++-++|+.+.|+....|+.|+.||..+|+++.|.-.+--+
T Consensus       341 ~~Qa~FLl~K~-~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          341 NIQTNFLLNRG-DYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHTT-CHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHhccC-cHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            55577777755 6999999999999999999999999999999999999985443333

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=97.25  E-value=0.0064  Score=52.20  Aligned_cols=118  Identities=7%  Similarity=0.043  Sum_probs=91.1

Q ss_pred             CCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcC---------CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Q 029199           63 GGDSQGVEEYYKKMVEEN--PGNPLFLSNYAQFLYQSKQ---------DLPKAEEYYSRAILAD-PGDGEILSQYAKLVW  130 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~--P~~~~~~~~la~~l~~~~g---------~~~~A~~~~~~al~l~-P~~~~~~~~lg~~l~  130 (197)
                      .|+.++|++.|++..+..  | +...|+.+-..+.. .+         ..++|.+.|++..... +-|...+..+-..+.
T Consensus        39 ~G~~~~A~~lf~~M~~~Gv~p-d~~tyn~Li~~c~~-~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~  116 (501)
T 4g26_A           39 KGDVLEALRLYDEARRNGVQL-SQYHYNVLLYVCSL-AEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAV  116 (501)
T ss_dssp             SCCHHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHTT-CCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHHh-CCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence            699999999999998763  5 34445544433332 22         4789999999988764 336677788888889


Q ss_pred             HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCccccccCCCccccc
Q 029199          131 ELHNDQDRAATYYERAVHAS-PEDSHVHASYAGFLWETEEDNDECDAPSELDSN  183 (197)
Q Consensus       131 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~ea~~~~~~~~~~  183 (197)
                      +.|+ +++|.+.|++..+.. +.+...|..+-..+.+.|+.++|.+.|+++...
T Consensus       117 ~~g~-~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~  169 (501)
T 4g26_A          117 AKDD-PEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVES  169 (501)
T ss_dssp             HHTC-HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             hcCC-HHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            9885 999999999988763 336889999999999999999999999987433

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.24  E-value=0.0012  Score=47.16  Aligned_cols=85  Identities=9%  Similarity=0.022  Sum_probs=67.8

Q ss_pred             CCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCHHHH
Q 029199           26 GTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPG-NPLFLSNYAQFLYQSKQDLPKA  104 (197)
Q Consensus        26 ~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~l~~~~g~~~~A  104 (197)
                      ++.++...|..++++-.-.                 +..+..+++..++..++..|. .-+.++.+|.-+++ .|+|++|
T Consensus        35 ~~vs~~t~F~YAw~Lv~S~-----------------~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~yk-l~~Y~~A   96 (144)
T 1y8m_A           35 PTATIQSRFNYAWGLIKST-----------------DVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYK-LGEYSMA   96 (144)
T ss_dssp             TTSCHHHHHHHHHHHHHSS-----------------SHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHT-TTCHHHH
T ss_pred             CCCcHHHHHHHHHHHHcCC-----------------CHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHH-hhhHHHH
Confidence            3567788888877765421                 135667999999999999995 56678888877776 9999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHH
Q 029199          105 EEYYSRAILADPGDGEILSQYAKL  128 (197)
Q Consensus       105 ~~~~~~al~l~P~~~~~~~~lg~~  128 (197)
                      +.+.+..|+.+|+|..+......+
T Consensus        97 r~y~d~lL~~eP~n~QA~~Lk~~I  120 (144)
T 1y8m_A           97 KRYVDTLFEHERNNKQVGALKSMV  120 (144)
T ss_dssp             HHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCcHHHHHHHHHH
Confidence            999999999999999987666544

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.18  E-value=0.0017  Score=45.80  Aligned_cols=87  Identities=9%  Similarity=0.010  Sum_probs=69.3

Q ss_pred             cCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCHHH
Q 029199           25 RGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPG-NPLFLSNYAQFLYQSKQDLPK  103 (197)
Q Consensus        25 ~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~l~~~~g~~~~  103 (197)
                      .+..++...|..++++-.-.                 ...+..+++..++..++.+|. .-+.++.+|.-+++ .|+|++
T Consensus        35 ~~~vs~qt~F~yAw~Lv~S~-----------------~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yk-lgdY~~   96 (134)
T 3o48_A           35 GPTATIQSRFNYAWGLIKST-----------------DVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYK-LGEYSM   96 (134)
T ss_dssp             GGGSCHHHHHHHHHHHHHSS-----------------CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH-HTCHHH
T ss_pred             CCCCChhhHHHHHHHHHcCC-----------------CHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHH-hhhHHH
Confidence            34457777788777764421                 124667999999999999994 47788889977787 999999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHH
Q 029199          104 AEEYYSRAILADPGDGEILSQYAKLV  129 (197)
Q Consensus       104 A~~~~~~al~l~P~~~~~~~~lg~~l  129 (197)
                      |+.+.+..|+.+|+|..+......+-
T Consensus        97 Ar~y~d~lL~~eP~N~QA~~Lk~~Ie  122 (134)
T 3o48_A           97 AKRYVDTLFEHERNNKQVGALKSMVE  122 (134)
T ss_dssp             HHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence            99999999999999999987766543

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=96.68  E-value=0.015  Score=50.02  Aligned_cols=80  Identities=20%  Similarity=0.221  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 029199           86 FLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLW  165 (197)
Q Consensus        86 ~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  165 (197)
                      .+..+|.+... ...++.|..+|.+|+.++|++...++.+|.+....+ +.-+|+-+|.+++......+.+..|+...+.
T Consensus       154 ~l~~LGDL~RY-~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~-~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~  231 (497)
T 1ya0_A          154 CLVHLGDIARY-RNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKG-DHLTTIFYYCRSIAVKFPFPAASTNLQKALS  231 (497)
T ss_dssp             HHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTT-CHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred             HHHHcccHHHH-HHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhccc-ccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence            45568866665 789999999999999999999999999998877766 4779999999999988789999999999998


Q ss_pred             Hc
Q 029199          166 ET  167 (197)
Q Consensus       166 ~~  167 (197)
                      +.
T Consensus       232 ~~  233 (497)
T 1ya0_A          232 KA  233 (497)
T ss_dssp             HH
T ss_pred             HH
Confidence            74

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=96.38  E-value=0.079  Score=41.75  Aligned_cols=64  Identities=22%  Similarity=0.205  Sum_probs=56.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 029199           61 GSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQY  125 (197)
Q Consensus        61 ~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~l  125 (197)
                      .+.|++++|++..+..++.+|.|......|-.++.. .|+++.|.+.++.+.+++|.....-..+
T Consensus         8 l~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv-~G~w~RA~~QL~~~a~l~p~~~~~a~~y   71 (273)
T 1zbp_A            8 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCI-DGDFERADEQLMQSIKLFPEYLPGASQL   71 (273)
T ss_dssp             TTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             HhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhCchhhHHHHHH
Confidence            446999999999999999999999999999988887 9999999999999999999876654333

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=96.33  E-value=0.011  Score=53.32  Aligned_cols=114  Identities=10%  Similarity=0.009  Sum_probs=78.8

Q ss_pred             HHHHhhhcCcccccCCCChhhHHhhhccc-CCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHh--------CCC
Q 029199           12 VMEALWNAGFEQERGTVGQEMYLAKGLGV-GGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEE--------NPG   82 (197)
Q Consensus        12 ~~~a~~~~~~~~~~~p~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~P~   82 (197)
                      +.-|+..|....+.+|...-.+....+.+ ..+                   ..+--+|++.+.+.++.        .+.
T Consensus       265 ~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~-------------------~~~Ev~av~ll~~~l~~~~~~~~~l~~~  325 (754)
T 4gns_B          265 VDFTIDYLKGLTKKDPIHDIYYKTAMITILDHI-------------------ETKELDMITILNETLDPLLSLLNDLPPR  325 (754)
T ss_dssp             HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTC-------------------GGGHHHHHHHHHHHHHHHHHHHHTCSSC
T ss_pred             HHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHh-------------------hhhhHHHHHHHHHHHHHhhhhhhhhccc
Confidence            34466666666666775544333333322 221                   12345788888777742        233


Q ss_pred             C----------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 029199           83 N----------PLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERA  146 (197)
Q Consensus        83 ~----------~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~a  146 (197)
                      +          ...+..-+.++.. .|+++-|+.+-++|+..-|.+...|+.++.+|..++ |++.|+-.+.-+
T Consensus       326 ~~~~~~~~~~~~~LL~~Qa~FLl~-K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~-d~e~ALLtLNSc  397 (754)
T 4gns_B          326 DADSARLMNCMSDLLNIQTNFLLN-RGDYELALGVSNTSTELALDSFESWYNLARCHIKKE-EYEKALFAINSM  397 (754)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTT-CHHHHHHHHHHS
T ss_pred             ccccccccCcchHHHHHHHHHHhc-cCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhc-cHHHHHHHHhcC
Confidence            3          2344445777887 899999999999999999999999999999999998 599999766554

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=95.72  E-value=0.089  Score=41.47  Aligned_cols=62  Identities=24%  Similarity=0.231  Sum_probs=56.4

Q ss_pred             HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 029199           94 LYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVH  157 (197)
Q Consensus        94 l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~  157 (197)
                      +.+ .|+.++|+......++.+|.|+.....+-.+|+-.| ++++|.+.++.+.+++|+....-
T Consensus         7 ll~-~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G-~w~RA~~QL~~~a~l~p~~~~~a   68 (273)
T 1zbp_A            7 ALS-EGQLQQALELLIEAIKASPKDASLRSSFIELLCIDG-DFERADEQLMQSIKLFPEYLPGA   68 (273)
T ss_dssp             HTT-TTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCGGGHHHH
T ss_pred             HHh-CCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCchhhHHH
Confidence            344 799999999999999999999999999999999988 59999999999999999876654

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=95.60  E-value=0.18  Score=41.65  Aligned_cols=83  Identities=12%  Similarity=0.010  Sum_probs=64.0

Q ss_pred             CCHHHHHHHHHHHHHhCC--------CC--H------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH
Q 029199           64 GDSQGVEEYYKKMVEENP--------GN--P------------LFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEI  121 (197)
Q Consensus        64 g~~~~A~~~~~~al~~~P--------~~--~------------~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~  121 (197)
                      |+.+.|...+++|+.+--        ..  .            .+...++..+.. .|++.+++..+++++..+|-+..+
T Consensus       129 ~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~-~g~~~~a~~~l~~~~~~~P~~E~~  207 (388)
T 2ff4_A          129 GRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIA-CGRASAVIAELEALTFEHPYREPL  207 (388)
T ss_dssp             TCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred             CCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHH
Confidence            677888888888887631        11  1            122234445555 899999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 029199          122 LSQYAKLVWELHNDQDRAATYYERAVH  148 (197)
Q Consensus       122 ~~~lg~~l~~~~~~~~~A~~~~~~al~  148 (197)
                      +..+-.+|+..|+ ..+|++.|++.-+
T Consensus       208 ~~~lm~al~~~Gr-~~~Al~~y~~~r~  233 (388)
T 2ff4_A          208 WTQLITAYYLSDR-QSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHHHHHTTTC-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCC-HHHHHHHHHHHHH
Confidence            9999999999886 8899999888654

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=95.45  E-value=0.063  Score=46.11  Aligned_cols=68  Identities=19%  Similarity=0.183  Sum_probs=59.4

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 029199           63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWE  131 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~  131 (197)
                      ...+..|..+|.+|+.++|++...++.||.+... .|+.-+|+-+|-+++......+.+..|+...+-.
T Consensus       165 ~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~-~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~  232 (497)
T 1ya0_A          165 RNQTSQAESYYRHAAQLVPSNGQPYNQLAILASS-KGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHH-TTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhc-ccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence            4677899999999999999999999999955555 8999999999999998887789999998876554

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=94.72  E-value=0.18  Score=44.56  Aligned_cols=42  Identities=12%  Similarity=0.124  Sum_probs=31.4

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 029199           64 GDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRA  111 (197)
Q Consensus        64 g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~a  111 (197)
                      |++++|.+..     ...+++..|..+|..+.. .++++.|+.+|.++
T Consensus       666 ~~~~~A~~~~-----~~~~~~~~W~~la~~al~-~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          666 GQLTLARDLL-----TDESAEMKWRALGDASLQ-RFNFKLAIEAFTNA  707 (814)
T ss_dssp             TCHHHHHHHH-----TTCCCHHHHHHHHHHHHH-TTCHHHHHHHHHHH
T ss_pred             CCHHHHHHHH-----HhhCcHhHHHHHHHHHHH-cCCHHHHHHHHHHc
Confidence            5666665553     334678889999977776 89999999999885

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=94.16  E-value=0.94  Score=33.30  Aligned_cols=43  Identities=16%  Similarity=0.164  Sum_probs=37.6

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 029199           64 GDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAI  112 (197)
Q Consensus        64 g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al  112 (197)
                      |+++.|.+..++.     ++...|..||..... .|+++-|+.||.++-
T Consensus        19 g~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~-~gn~~lAe~cy~~~~   61 (177)
T 3mkq_B           19 GNLDAALDEAKKL-----NDSITWERLIQEALA-QGNASLAEMIYQTQH   61 (177)
T ss_dssp             TCHHHHHHHHHHH-----CCHHHHHHHHHHHHH-TTCHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHh-----CCHHHHHHHHHHHHH-cCChHHHHHHHHHhC
Confidence            8899999887665     688999999988887 999999999999874

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=93.64  E-value=0.92  Score=40.01  Aligned_cols=106  Identities=14%  Similarity=0.008  Sum_probs=59.9

Q ss_pred             CCCHHHHHHHHHHH--------HHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 029199           63 GGDSQGVEEYYKKM--------VEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHN  134 (197)
Q Consensus        63 ~g~~~~A~~~~~~a--------l~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~  134 (197)
                      .|+++.|+++|.++        +.....+...+..++..... .|+++.|..+|.+.     .+++-   .-.+|.+.++
T Consensus       694 ~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~-~~~~~~A~~~~~~~-----g~~~~---a~~~~~~~~~  764 (814)
T 3mkq_A          694 RFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAET-TGKFNLAFNAYWIA-----GDIQG---AKDLLIKSQR  764 (814)
T ss_dssp             TTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHH-----TCHHH---HHHHHHHTTC
T ss_pred             cCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHH-cCchHHHHHHHHHc-----CCHHH---HHHHHHHcCC
Confidence            49999999999986        22224444444555544444 56666555554432     11111   1223455453


Q ss_pred             CHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCc--cccccCCCccc
Q 029199          135 DQDRAATYYERAVHASPED---SHVHASYAGFLWETEED--NDECDAPSELD  181 (197)
Q Consensus       135 ~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~--~ea~~~~~~~~  181 (197)
                       +++|...-++   ..|..   +.+...++.-+...|+.  .++...++.+|
T Consensus       765 -~~~A~~lA~~---~~~~~~~i~~~~~~~~~~L~~~~~~~~a~~l~~~~~~~  812 (814)
T 3mkq_A          765 -FSEAAFLGST---YGLGDNEVNDIVTKWKENLILNGKNTVSERVCGAEGLP  812 (814)
T ss_dssp             -HHHHHHHHHH---TTCCHHHHHHHHHHHHHHHHTTTCHHHHTTBCCGGGCC
T ss_pred             -hHHHHHHHHH---hCCChHHHHHHHHHHHHHHHhccchhHHHhhCCcccCC
Confidence             6666664443   44544   36677778888888875  34556666543

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=93.16  E-value=1.9  Score=31.86  Aligned_cols=87  Identities=21%  Similarity=0.073  Sum_probs=58.5

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHH--Hh---------------CCCCHHH-HHH
Q 029199           63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAI--LA---------------DPGDGEI-LSQ  124 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al--~l---------------~P~~~~~-~~~  124 (197)
                      .|++..++-.+.+     -+.....+--+.++.. ..++.+|+.++++.+  +.               ||.+-+. ...
T Consensus        46 ngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~k-lKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l  119 (242)
T 3kae_A           46 NGEYTRALFHLHK-----LNTCTSKYYESLCYKK-KKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESL  119 (242)
T ss_dssp             TTCHHHHHHHHHT-----CCBHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHH
T ss_pred             cchHhHHHHHHHh-----cchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHH
Confidence            4777777654322     2333444434436665 899999999999998  22               3555554 445


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 029199          125 YAKLVWELHNDQDRAATYYERAVHASPEDSHV  156 (197)
Q Consensus       125 lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~  156 (197)
                      +|.++.+.| +.++|+.+|......+|=-+.+
T Consensus       120 ~a~lltq~g-~r~EaI~y~~~Sf~~~~lf~~v  150 (242)
T 3kae_A          120 LGDLCTLSG-YREEGIGHYVRSFGKSFLFSPV  150 (242)
T ss_dssp             HHHHHHHTT-CHHHHHHHHHHHHHHCCCHHHH
T ss_pred             HHHHHHHhc-CHHHhhhHhhhhcCCccccchH
Confidence            677777766 5899999999999988865443

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=92.86  E-value=0.49  Score=44.53  Aligned_cols=104  Identities=12%  Similarity=0.027  Sum_probs=74.5

Q ss_pred             HHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---C--------------------CCCHHHHHHHHHHHHHH
Q 029199           76 MVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILA---D--------------------PGDGEILSQYAKLVWEL  132 (197)
Q Consensus        76 al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l---~--------------------P~~~~~~~~lg~~l~~~  132 (197)
                      .+...|.++..-+.+|.++.. .|++++|..+|+++-.-   +                    ..-+..+.....++.+ 
T Consensus       834 l~~~~~~~~~~~yl~g~~~L~-~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~-  911 (1139)
T 4fhn_B          834 LIGWLNSDPIAVYLKALIYLK-SKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFE-  911 (1139)
T ss_dssp             HHHHSCCCHHHHHHHHHHHHH-TTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHH-
T ss_pred             HhhhccCCcHHHHHHHHHHHh-cCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHH-
Confidence            445678888888899988887 99999999999887311   0                    1122334444444444 


Q ss_pred             cCCHHHHHHHHHHHHHhCC-CCHH----HHHHHHHHHHHcCCccccccCCCccc
Q 029199          133 HNDQDRAATYYERAVHASP-EDSH----VHASYAGFLWETEEDNDECDAPSELD  181 (197)
Q Consensus       133 ~~~~~~A~~~~~~al~~~p-~~~~----~~~~la~~~~~~g~~~ea~~~~~~~~  181 (197)
                      .+.++.+++..+.|++..+ +++.    .|.++=.....+|+|++|-..+-.+|
T Consensus       912 ~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~p  965 (1139)
T 4fhn_B          912 ESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLS  965 (1139)
T ss_dssp             TSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCC
Confidence            4468999999999998764 4442    67888888999999999976665544

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=92.48  E-value=0.79  Score=42.83  Aligned_cols=92  Identities=9%  Similarity=-0.087  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Q 029199           87 LSNYAQFLYQSKQDLPKAEEYYSRAILA----DPGDGEILSQYAKLVWELHNDQDRAATYYERAVHAS-PEDSHVHASYA  161 (197)
Q Consensus        87 ~~~la~~l~~~~g~~~~A~~~~~~al~l----~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la  161 (197)
                      ++.+-..+.+ .|+.++|...|+..-+.    -.-|...++.+-..|.+.|+ .++|.+.|++..+.. ..|...|..+-
T Consensus       130 ynaLIdglcK-~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~-~~eA~~Lf~eM~~~G~~PDvvTYntLI  207 (1134)
T 3spa_A          130 LLAFFKCCLL-TDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGA-FKELVYVLFMVKDAGLTPDLLSYAAAL  207 (1134)
T ss_dssp             HHHHHHHHHH-HTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred             HHHHHHHHHh-CCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence            4445555555 78888888888654321    23356666677677778775 888888888887653 33577778888


Q ss_pred             HHHHHcCCc-cccccCCCcc
Q 029199          162 GFLWETEED-NDECDAPSEL  180 (197)
Q Consensus       162 ~~~~~~g~~-~ea~~~~~~~  180 (197)
                      .++.+.|+. ++|.+.|+++
T Consensus       208 ~glcK~G~~~e~A~~Ll~EM  227 (1134)
T 3spa_A          208 QCMGRQDQDAGTIERCLEQM  227 (1134)
T ss_dssp             HHHHHHTCCHHHHHHHHHHH
T ss_pred             HHHHhCCCcHHHHHHHHHHH
Confidence            888888875 4566677665

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=92.21  E-value=0.78  Score=33.93  Aligned_cols=94  Identities=11%  Similarity=0.015  Sum_probs=67.9

Q ss_pred             hCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--h-------
Q 029199           79 ENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVH--A-------  149 (197)
Q Consensus        79 ~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~--~-------  149 (197)
                      +-|+.++.-..++..++- .|.+..++-++.     .-+.....+.-..||...+ |+.+|+.++++.++  .       
T Consensus        28 L~~~~~eY~lL~~I~Lyy-ngEY~R~Lf~L~-----~lNT~Ts~YYk~LCy~klK-dYkkA~~~le~il~~kvd~d~~~d  100 (242)
T 3kae_A           28 LLPCKPEYRMLMSIVLYL-NGEYTRALFHLH-----KLNTCTSKYYESLCYKKKK-DYKKAIKSLESILEGKVERDPDVD  100 (242)
T ss_dssp             HC----CTHHHHHHHHHH-TTCHHHHHHHHH-----TCCBHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCSBCCCCCC
T ss_pred             HccCChHHHhhhhhhhhh-cchHhHHHHHHH-----hcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcccccCcccc
Confidence            345555666667877887 899988776543     3456777777888888877 69999999999992  2       


Q ss_pred             --------CCCCHHH-HHHHHHHHHHcCCccccccCCCc
Q 029199          150 --------SPEDSHV-HASYAGFLWETEEDNDECDAPSE  179 (197)
Q Consensus       150 --------~p~~~~~-~~~la~~~~~~g~~~ea~~~~~~  179 (197)
                              +|.+.+. +..+|.++.++|..+||+..+..
T Consensus       101 ~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~  139 (242)
T 3kae_A          101 ARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVR  139 (242)
T ss_dssp             HHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             cccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhh
Confidence                    3555555 45689999999999999876655

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=91.89  E-value=0.5  Score=38.98  Aligned_cols=50  Identities=16%  Similarity=0.148  Sum_probs=46.3

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 029199           63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAIL  113 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~  113 (197)
                      .|++++++..+++++..+|-+..+|..+-.+++. .|+..+|+..|++.-+
T Consensus       184 ~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~-~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          184 CGRASAVIAELEALTFEHPYREPLWTQLITAYYL-SDRQSDALGAYRRVKT  233 (388)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHT-TTCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Confidence            5999999999999999999999999999988887 9999999999988765

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=91.06  E-value=1.5  Score=38.53  Aligned_cols=115  Identities=11%  Similarity=0.086  Sum_probs=68.2

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHh--cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 029199           64 GDSQGVEEYYKKMVEENPGNPLFL-SNYAQFLYQS--KQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAA  140 (197)
Q Consensus        64 g~~~~A~~~~~~al~~~P~~~~~~-~~la~~l~~~--~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~  140 (197)
                      .+.+.|...+.+..+..+-+...+ .....+....  .+...++...+.++....+++....+..+..+ ..+ +++.|.
T Consensus       228 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~Al-r~~-d~~~a~  305 (618)
T 1qsa_A          228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMAL-GTG-DRRGLN  305 (618)
T ss_dssp             HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHH-HHT-CHHHHH
T ss_pred             cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHHHHHHHHHHH-HCC-CHHHHH
Confidence            466777777766654433333322 2222122110  12256777777776654444444444444444 435 588888


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          141 TYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       141 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      .+|++.-....+.+...|.+|..+..+|+.++|...|+++
T Consensus       306 ~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~  345 (618)
T 1qsa_A          306 TWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQL  345 (618)
T ss_dssp             HHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            8887765433456777888888888888888887777665

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=89.62  E-value=12  Score=35.14  Aligned_cols=86  Identities=5%  Similarity=-0.176  Sum_probs=65.3

Q ss_pred             CCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHcCCH
Q 029199           63 GGDSQGVEEYYKKMVE-----ENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILAD-PGDGEILSQYAKLVWELHNDQ  136 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~-----~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~l~~~~~~~  136 (197)
                      .|+.++|.+.|.+.-+     ..| +...|+-+-.-+.+ .|+.++|.+.|++..+.. .-|...+..+-.++.+.|+..
T Consensus       140 ~G~leeA~~Lf~eM~~m~~kG~~P-dvvTYNtLI~Glck-~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~glcK~G~~~  217 (1134)
T 3spa_A          140 TDQLPLAHHLLVVHHGQRQKRKLL-TLDMYNAVMLGWAR-QGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDA  217 (1134)
T ss_dssp             HTCHHHHHHHHHHHHHSHHHHTTC-CHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCCH
T ss_pred             CCCHHHHHHHHHHHHHHhhcCCCC-CHhHHHHHHHHHHh-CCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCcH
Confidence            4999999999976432     456 45566666657776 899999999999998753 235556666666888878656


Q ss_pred             HHHHHHHHHHHHhC
Q 029199          137 DRAATYYERAVHAS  150 (197)
Q Consensus       137 ~~A~~~~~~al~~~  150 (197)
                      ++|.++|+...+..
T Consensus       218 e~A~~Ll~EM~~kG  231 (1134)
T 3spa_A          218 GTIERCLEQMSQEG  231 (1134)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcC
Confidence            78999999998775

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=88.27  E-value=4.3  Score=29.75  Aligned_cols=55  Identities=13%  Similarity=0.113  Sum_probs=45.2

Q ss_pred             CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 029199           82 GNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERA  146 (197)
Q Consensus        82 ~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~a  146 (197)
                      .|+...+.++   .. .|+++.|.+..+..     ++...|..+|..-...| +++-|..||.++
T Consensus         6 ~D~~~rF~LA---L~-lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~g-n~~lAe~cy~~~   60 (177)
T 3mkq_B            6 QDPHIRFDLA---LE-YGNLDAALDEAKKL-----NDSITWERLIQEALAQG-NASLAEMIYQTQ   60 (177)
T ss_dssp             SCHHHHHHHH---HH-TTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTT-CHHHHHHHHHHT
T ss_pred             CChHHHHHHH---Hh-cCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcC-ChHHHHHHHHHh
Confidence            4677777777   35 89999999987765     68999999999988867 599999999875

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=87.31  E-value=4.8  Score=33.31  Aligned_cols=114  Identities=9%  Similarity=-0.035  Sum_probs=74.9

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHH------HHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCCH----HHHHHHHHHHHH
Q 029199           64 GDSQGVEEYYKKMVEENPGNPLFL------SNYAQFLYQSKQDLPKAEEYYSRAILAD--PGDG----EILSQYAKLVWE  131 (197)
Q Consensus        64 g~~~~A~~~~~~al~~~P~~~~~~------~~la~~l~~~~g~~~~A~~~~~~al~l~--P~~~----~~~~~lg~~l~~  131 (197)
                      +..+.-++...++++-.-+.-..|      ..||.+++. .|++.+|...+.+.++--  .++.    +++..-..++..
T Consensus        73 ~~~~~~~~~~~~~~~~a~~~~r~flr~~l~~kL~~l~~~-~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~  151 (394)
T 3txn_A           73 AGTGIEVQLCKDCIEWAKQEKRTFLRQSLEARLIALYFD-TALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHA  151 (394)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHH
Confidence            334445555555554332222222      278988887 999999999998887641  1222    445555667888


Q ss_pred             HcCCHHHHHHHHHHHHHhC---CCCHH----HHHHHHHHHH-HcCCccccccCCCc
Q 029199          132 LHNDQDRAATYYERAVHAS---PEDSH----VHASYAGFLW-ETEEDNDECDAPSE  179 (197)
Q Consensus       132 ~~~~~~~A~~~~~~al~~~---p~~~~----~~~~la~~~~-~~g~~~ea~~~~~~  179 (197)
                      ++ ++.++...|.+|.+..   +.+|.    +..--|..+. ..++|.+|...|-+
T Consensus       152 ~~-n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~e  206 (394)
T 3txn_A          152 LS-NLPKARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYE  206 (394)
T ss_dssp             TT-CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred             hc-cHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHH
Confidence            77 5999999999997654   24454    3456677888 89999998554443

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=87.30  E-value=0.48  Score=39.61  Aligned_cols=95  Identities=13%  Similarity=0.064  Sum_probs=68.6

Q ss_pred             CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHH--
Q 029199           83 NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADP---GDGEILSQYAKLVWELHNDQDRAATYYERAVHAS--PEDSH--  155 (197)
Q Consensus        83 ~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P---~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~--p~~~~--  155 (197)
                      -..++..+|.+++. .|++++|.++|.++.....   .-.++++..-.+....+ |+..+..++.++..+.  ..++.  
T Consensus       130 ~~~~~~~la~~~~~-~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~-d~~~~~~~~~ka~~~~~~~~d~~~~  207 (429)
T 4b4t_R          130 QAQAWINLGEYYAQ-IGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYN-DQLYVKEKLEAVNSMIEKGGDWERR  207 (429)
T ss_dssp             CSSCCHHHHHHHHH-HCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHTTCCCTHHH
T ss_pred             HHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHhhhcCCCHHHH
Confidence            34578889988887 9999999999999887642   23466666767777767 6999999999997652  23333  


Q ss_pred             --HHHHHHHHHHHcCCccccccCCCc
Q 029199          156 --VHASYAGFLWETEEDNDECDAPSE  179 (197)
Q Consensus       156 --~~~~la~~~~~~g~~~ea~~~~~~  179 (197)
                        .....|.++...++|.+|...|-.
T Consensus       208 ~~lk~~~gl~~l~~r~f~~Aa~~f~e  233 (429)
T 4b4t_R          208 NRYKTYYGIHCLAVRNFKEAAKLLVD  233 (429)
T ss_dssp             HHHHHHHHHGGGGTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhChHHHHHHHHHH
Confidence              334556677778888888665554

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=82.24  E-value=14  Score=30.43  Aligned_cols=108  Identities=11%  Similarity=-0.069  Sum_probs=70.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---CCCHHH----HHHHHH
Q 029199           61 GSGGDSQGVEEYYKKMVEENPG--N----PLFLSNYAQFLYQSKQDLPKAEEYYSRAILAD---PGDGEI----LSQYAK  127 (197)
Q Consensus        61 ~~~g~~~~A~~~~~~al~~~P~--~----~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~---P~~~~~----~~~lg~  127 (197)
                      ...|++.+|.+.+.+.++.-..  +    .+++..-..++.. .+++.++...|.+|.+..   +.+|.+    ..--|.
T Consensus       110 ~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~-~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi  188 (394)
T 3txn_A          110 FDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHA-LSNLPKARAALTSARTTANAIYCPPKVQGALDLQSGI  188 (394)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred             HHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHH-hccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHhhH
Confidence            3459999999999998874221  2    3344444556666 899999999999987653   244433    333465


Q ss_pred             HHH-HHcCCHHHHHHHHHHHHHhCCC--CH---HHHHHHHHHHHHcCCc
Q 029199          128 LVW-ELHNDQDRAATYYERAVHASPE--DS---HVHASYAGFLWETEED  170 (197)
Q Consensus       128 ~l~-~~~~~~~~A~~~~~~al~~~p~--~~---~~~~~la~~~~~~g~~  170 (197)
                      ++. . .++|++|..+|-.+++...+  ++   .+...++.|-.-.++.
T Consensus       189 ~~l~~-~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r  236 (394)
T 3txn_A          189 LHAAD-ERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQS  236 (394)
T ss_dssp             HHHHT-TSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCG
T ss_pred             HHHHh-ccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCH
Confidence            665 5 44799999999999754322  12   3344455555555553

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=80.23  E-value=14  Score=30.68  Aligned_cols=88  Identities=15%  Similarity=0.061  Sum_probs=62.6

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCCHHHH----HHHHHHHHHH
Q 029199           62 SGGDSQGVEEYYKKMVEENPGN---PLFLSNYAQFLYQSKQDLPKAEEYYSRAILAD--PGDGEIL----SQYAKLVWEL  132 (197)
Q Consensus        62 ~~g~~~~A~~~~~~al~~~P~~---~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~--P~~~~~~----~~lg~~l~~~  132 (197)
                      ..|++++|.++|.++.......   .+.+.....+... .+++..+...+.++-.+-  ..++...    ...|.++...
T Consensus       143 ~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~-~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~  221 (429)
T 4b4t_R          143 QIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFF-YNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYYGIHCLAV  221 (429)
T ss_dssp             HHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHHHGGGGT
T ss_pred             HcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHh
Confidence            3499999999999988764333   4566666666666 899999999999987652  3344333    3345555554


Q ss_pred             cCCHHHHHHHHHHHHHhCC
Q 029199          133 HNDQDRAATYYERAVHASP  151 (197)
Q Consensus       133 ~~~~~~A~~~~~~al~~~p  151 (197)
                      + +|.+|..+|-.++....
T Consensus       222 r-~f~~Aa~~f~e~~~t~~  239 (429)
T 4b4t_R          222 R-NFKEAAKLLVDSLATFT  239 (429)
T ss_dssp             S-CHHHHHHHHHHHHHHSC
T ss_pred             C-hHHHHHHHHHHHhccCC
Confidence            4 69999999988876643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	197
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	8e-08
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-07
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	6e-07
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-06
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-05
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-05
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	8e-07
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	2e-05
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	3e-04
d1nzna_	122	a.118.8.1 (A:) Mitochondria fission protein Fis1 {	1e-04
d1nzna_	122	a.118.8.1 (A:) Mitochondria fission protein Fis1 {	5e-04
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	7e-04
d2onda1	308	a.118.8.7 (A:242-549) Cleavage stimulation factor	0.001
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	0.004

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.3 bits (116), Expect = 8e-08
 Identities = 24/106 (22%), Positives = 46/106 (43%), Gaps = 2/106 (1%)

Query: 64  GDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILS 123
           G      + Y++ +E  P  P    N A    + K  + +AE+ Y+ A+   P   + L+
Sbjct: 251 GLIDLAIDTYRRAIELQPHFPDAYCNLAN-ALKEKGSVAEAEDCYNTALRLCPTHADSLN 309

Query: 124 QYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEE 169
             A +  E   + + A   Y +A+   PE +  H++ A  L +  +
Sbjct: 310 NLANIKREQ-GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGK 354

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (111), Expect = 3e-07
 Identities = 20/103 (19%), Positives = 42/103 (40%), Gaps = 2/103 (1%)

Query: 64  GDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILS 123
           G     E+ Y   +   P +   L+N A  + + + ++ +A   Y +A+   P      S
Sbjct: 285 GSVAEAEDCYNTALRLCPTHADSLNNLAN-IKREQGNIEEAVRLYRKALEVFPEFAAAHS 343

Query: 124 QYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWE 166
             A ++ +       A  +Y+ A+  SP  +  +++    L E
Sbjct: 344 NLASVLQQQ-GKLQEALMHYKEAIRISPTFADAYSNMGNTLKE 385

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (109), Expect = 6e-07
 Identities = 16/111 (14%), Positives = 35/111 (31%), Gaps = 1/111 (0%)

Query: 64  GDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILS 123
           GD +  E +  ++  + P N   L   +  ++   + L ++  + + AI  +P   E  S
Sbjct: 13  GDFEAAERHCMQLWRQEPDNTGVLLLLSS-IHFQCRRLDRSAHFSTLAIKQNPLLAEAYS 71

Query: 124 QYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDEC 174
               +  E    Q+    Y                  A  +   + +    
Sbjct: 72  NLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQ 122

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.8 bits (107), Expect = 1e-06
 Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 1/71 (1%)

Query: 64  GDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILS 123
           G+ +     Y+K +E  P      SN A  + Q +  L +A  +Y  AI   P   +  S
Sbjct: 319 GNIEEAVRLYRKALEVFPEFAAAHSNLAS-VLQQQGKLQEALMHYKEAIRISPTFADAYS 377

Query: 124 QYAKLVWELHN 134
                + E+ +
Sbjct: 378 NMGNTLKEMQD 388

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (98), Expect = 1e-05
 Identities = 14/84 (16%), Positives = 34/84 (40%), Gaps = 2/84 (2%)

Query: 91  AQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHAS 150
           A   YQ+  D   AE +  +    +P +  +L   + + ++     DR+A +   A+  +
Sbjct: 6   AHREYQAG-DFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQC-RRLDRSAHFSTLAIKQN 63

Query: 151 PEDSHVHASYAGFLWETEEDNDEC 174
           P  +  +++      E  +  +  
Sbjct: 64  PLLAEAYSNLGNVYKERGQLQEAI 87

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (96), Expect = 3e-05
 Identities = 19/106 (17%), Positives = 35/106 (33%), Gaps = 2/106 (1%)

Query: 64  GDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILS 123
                    Y + +  +P + +   N A  +Y  +  +  A + Y RAI   P   +   
Sbjct: 217 RIFDRAVAAYLRALSLSPNHAVVHGNLAC-VYYEQGLIDLAIDTYRRAIELQPHFPDAYC 275

Query: 124 QYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEE 169
             A  + E  +  + A   Y  A+   P  +    + A    E   
Sbjct: 276 NLANALKEKGSVAE-AEDCYNTALRLCPTHADSLNNLANIKREQGN 320

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 45.8 bits (108), Expect = 8e-07
 Identities = 19/113 (16%), Positives = 39/113 (34%), Gaps = 2/113 (1%)

Query: 64  GDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILS 123
           G  Q   E   + ++ +P +    S++ + L     D  +A+E   ++I   P      S
Sbjct: 10  GQLQQALELLIEAIKASPKDASLRSSFIE-LLCIDGDFERADEQLMQSIKLFPEYLPGAS 68

Query: 124 QYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDA 176
           Q   LV +    +   A     A      +    +  +  L    +D ++   
Sbjct: 69  QLRHLV-KAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSE 120

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (97), Expect = 2e-05
 Identities = 14/88 (15%), Positives = 30/88 (34%), Gaps = 4/88 (4%)

Query: 64  GDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILS 123
             +  + +           + L    +   + + +    +AE YY  A    P +G+  +
Sbjct: 134 THTSAIVKPQSSSCSYICQHCL---VHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYN 190

Query: 124 QYAKLVWELHNDQDRAATYYERAVHASP 151
           Q A ++     D      YY R++    
Sbjct: 191 QLA-ILASSKGDHLTTIFYYCRSIAVKF 217

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (89), Expect = 3e-04
 Identities = 16/104 (15%), Positives = 33/104 (31%), Gaps = 5/104 (4%)

Query: 70  EEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLV 129
            +Y ++               A+ ++ S+Q L   ++ Y + ++ D            L 
Sbjct: 6   AQYLRQAEVLKADMTDSKLGPAE-VWTSRQAL---QDLYQKMLVTDLEYALDKKVEQDL- 60

Query: 130 WELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDE 173
           W             +    A+P  S V A+ + FL        +
Sbjct: 61  WNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQ 104

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (88), Expect = 1e-04
 Identities = 9/83 (10%), Positives = 25/83 (30%), Gaps = 3/83 (3%)

Query: 95  YQSKQDLPKAEEYYSRAILADPGDGEILSQY--AKLVWELHNDQDRAATYYERAVHASPE 152
             S +DL K E+ +     A         +Y    +    ++D  +     E  +    +
Sbjct: 9   LVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSK 68

Query: 153 DSHVHASYA-GFLWETEEDNDEC 174
           +      +         ++ ++ 
Sbjct: 69  EEQRDYVFYLAVGNYRLKEYEKA 91

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (83), Expect = 5e-04
 Identities = 7/92 (7%), Positives = 26/92 (28%), Gaps = 3/92 (3%)

Query: 70  EEYYKKMVEENPGNP--LFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAK 127
           E+ ++        +    F   +     +   D+ K        +     + +    +  
Sbjct: 19  EKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYL 78

Query: 128 -LVWELHNDQDRAATYYERAVHASPEDSHVHA 158
            +      + ++A  Y    +   P+++    
Sbjct: 79  AVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE 110

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (85), Expect = 7e-04
 Identities = 16/113 (14%), Positives = 38/113 (33%), Gaps = 1/113 (0%)

Query: 62  SGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEI 121
               S+   +  +  +E N  N          L   ++DL +   Y +  I   P + ++
Sbjct: 55  RDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQV 114

Query: 122 LSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDEC 174
                 LV  L +   +   +    ++   ++ H        + E +  ++E 
Sbjct: 115 WHHRRVLVEWLRD-PSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNEL 166

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.1 bits (82), Expect = 0.001
 Identities = 21/125 (16%), Positives = 36/125 (28%), Gaps = 15/125 (12%)

Query: 64  GDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQS-------------KQDLPKAEEYYSR 110
             ++ V   Y++ +     +P      AQ+L QS             K    +A   Y R
Sbjct: 30  LITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYER 89

Query: 111 AI-LADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEE 169
           AI      +  +   YA    E     ++  + Y R +     D  +            E
Sbjct: 90  AISTLLKKNMLLYFAYADYE-ESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAE 148

Query: 170 DNDEC 174
                
Sbjct: 149 GIKSG 153

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.2 bits (79), Expect = 0.004
 Identities = 9/77 (11%), Positives = 24/77 (31%), Gaps = 1/77 (1%)

Query: 70  EEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLV 129
              Y++ +E  PG      N       +     +A E++  A+           +   + 
Sbjct: 226 VAAYRRALELQPGYIRSRYNL-GISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMS 284

Query: 130 WELHNDQDRAATYYERA 146
             + +    A +   ++
Sbjct: 285 ENIWSTLRLALSMLGQS 301

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	197
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.87
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.85
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.84
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.83
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.82
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.81
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.81
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.79
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.79
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.77
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.74
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.74
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.74
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.74
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.71
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.7
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.69
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.68
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.68
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.68
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.68
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.67
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.67
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.66
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.64
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.64
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.59
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.58
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.54
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.52
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.51
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.51
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.51
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.48
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.47
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.45
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.44
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.36
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.35
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.34
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.24
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.23
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	99.23
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.21
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.2
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	99.06
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	99.06
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.96
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.9
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.79
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.79
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.54
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.47
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.39
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.37
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.25
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	91.81
d2o02a1	230	zeta isoform {Cow (Bos taurus) [TaxId: 9913]}	81.05

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=6e-23  Score=165.80  Aligned_cols=149  Identities=13%  Similarity=0.098  Sum_probs=138.1

Q ss_pred             CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCC
Q 029199            3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPG   82 (197)
Q Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~   82 (197)
                      |.++.+.+++++|+..++++++.+|.+...|..+|..+..+                   .+++++|+..++++++++|+
T Consensus        50 ~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l-------------------~~~~~eal~~~~~al~~~p~  110 (315)
T d2h6fa1          50 RAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSL-------------------QKDLHEEMNYITAIIEEQPK  110 (315)
T ss_dssp             HHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-------------------TCCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHh-------------------CcCHHHHHHHHHHHHHHHHh
Confidence            55677778899999999999999999999999999887765                   25799999999999999999


Q ss_pred             CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 029199           83 NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAG  162 (197)
Q Consensus        83 ~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  162 (197)
                      +..+|.++|.++.. +|++++|+..|+++++++|++..+|.++|.++..+++ +++|+++|+++++++|++..+|+++|.
T Consensus       111 ~~~a~~~~~~~~~~-l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~-~~~Al~~~~~al~~~p~n~~a~~~r~~  188 (315)
T d2h6fa1         111 NYQVWHHRRVLVEW-LRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKL-WDNELQYVDQLLKEDVRNNSVWNQRYF  188 (315)
T ss_dssp             CHHHHHHHHHHHHH-HTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-CTTHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hhhHHHHHhHHHHh-hccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHCCccHHHHHHHHH
Confidence            99999999977776 9999999999999999999999999999999999996 899999999999999999999999999


Q ss_pred             HHHHcCCccc
Q 029199          163 FLWETEEDND  172 (197)
Q Consensus       163 ~~~~~g~~~e  172 (197)
                      ++..++++.+
T Consensus       189 ~l~~~~~~~~  198 (315)
T d2h6fa1         189 VISNTTGYND  198 (315)
T ss_dssp             HHHHTTCSCS
T ss_pred             HHHHccccch
Confidence            9999988643

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.6e-21  Score=155.60  Aligned_cols=176  Identities=11%  Similarity=0.038  Sum_probs=131.8

Q ss_pred             CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCC--------CCCCCCCCCc------ccCCCCCHHH
Q 029199            3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGG--------GTGGGGSGFY------PAGSGGDSQG   68 (197)
Q Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~--------~~~~~~~~~~------~~~~~g~~~~   68 (197)
                      |..+-+.|++.+|+..|..+++.+|+++..|+..|..+...|.+..        ....|.....      .+...|++++
T Consensus        26 g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~  105 (323)
T d1fcha_          26 GLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQ  105 (323)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccccccc
Confidence            5566778888888888888888888888888888887776654322        1223333221      1222355554


Q ss_pred             HHHHHHH-------------------------------------------------HHHhCCC--CHHHHHHHHHHHHHh
Q 029199           69 VEEYYKK-------------------------------------------------MVEENPG--NPLFLSNYAQFLYQS   97 (197)
Q Consensus        69 A~~~~~~-------------------------------------------------al~~~P~--~~~~~~~la~~l~~~   97 (197)
                      |++.|++                                                 +++++|+  ++.++..+|.++.. 
T Consensus       106 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~-  184 (323)
T d1fcha_         106 ACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNL-  184 (323)
T ss_dssp             HHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHH-
T ss_pred             cccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHH-
Confidence            4444443                                                 4444444  35567777766666 


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCC
Q 029199           98 KQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAP  177 (197)
Q Consensus        98 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~  177 (197)
                      .|++++|+..|++++..+|+++.+|+++|.++..+|+ +++|+++|+++++++|+++.+|+++|.++.++|++++|...|
T Consensus       185 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~  263 (323)
T d1fcha_         185 SGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQ-SEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHF  263 (323)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHhhhhcccccccccccccccchhhhhhccccccc-chhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            8899999999999999999999999999999998885 899999999999999999999999999999999999998888


Q ss_pred             Ccc
Q 029199          178 SEL  180 (197)
Q Consensus       178 ~~~  180 (197)
                      .+.
T Consensus       264 ~~a  266 (323)
T d1fcha_         264 LEA  266 (323)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            774

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=2e-21  Score=155.86  Aligned_cols=156  Identities=20%  Similarity=0.152  Sum_probs=137.9

Q ss_pred             CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCC
Q 029199            3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPG   82 (197)
Q Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~   82 (197)
                      |.++...+++.+|+..|......+|..+..+...|..+..                    .|++++|+..|+++++++|+
T Consensus       210 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~--------------------~~~~~~A~~~~~~al~~~p~  269 (388)
T d1w3ba_         210 GNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYE--------------------QGLIDLAIDTYRRAIELQPH  269 (388)
T ss_dssp             HHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHTCSS
T ss_pred             hhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHH--------------------CCCHHHHHHHHHHHHHhCCC
Confidence            5567777888889999988888899999998888887766                    38899999999999999999


Q ss_pred             CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 029199           83 NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAG  162 (197)
Q Consensus        83 ~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  162 (197)
                      ++.++.++|.++.. .|++++|+..|++++...|.++.++..+|.++...|+ +++|+++|+++++++|+++.+++++|.
T Consensus       270 ~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~la~  347 (388)
T d1w3ba_         270 FPDAYCNLANALKE-KGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGN-IEEAVRLYRKALEVFPEFAAAHSNLAS  347 (388)
T ss_dssp             CHHHHHHHHHHHHH-HSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC-HHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH-cCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            99999999977777 8999999999999999999999999999999888774 899999999999999999999999999


Q ss_pred             HHHHcCCccccccCCCcc
Q 029199          163 FLWETEEDNDECDAPSEL  180 (197)
Q Consensus       163 ~~~~~g~~~ea~~~~~~~  180 (197)
                      ++..+|++++|...|++.
T Consensus       348 ~~~~~g~~~~A~~~~~~a  365 (388)
T d1w3ba_         348 VLQQQGKLQEALMHYKEA  365 (388)
T ss_dssp             HHHTTTCCHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHH
Confidence            999999999998888874

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=2.2e-21  Score=155.57  Aligned_cols=143  Identities=17%  Similarity=0.141  Sum_probs=79.0

Q ss_pred             cchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCC
Q 029199            4 TALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGN   83 (197)
Q Consensus         4 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~   83 (197)
                      .++...+++.+|+..|..+++.+|+++..++..|..+...                    |++++|++.|++++...|.+
T Consensus       245 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~--------------------~~~~~A~~~~~~~~~~~~~~  304 (388)
T d1w3ba_         245 CVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEK--------------------GSVAEAEDCYNTALRLCPTH  304 (388)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHH--------------------SCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--------------------CCHHHHHHHHHhhhccCCcc
Confidence            3444455555555555555555555555555555544442                    55555555555555555555


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 029199           84 PLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGF  163 (197)
Q Consensus        84 ~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  163 (197)
                      ..++..++.++.. .|++++|+.+|+++++++|+++.+++++|.++...|+ +++|+.+|+++++++|+++.+|.++|.+
T Consensus       305 ~~~~~~l~~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~l~P~~~~a~~~lg~~  382 (388)
T d1w3ba_         305 ADSLNNLANIKRE-QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGK-LQEALMHYKEAIRISPTFADAYSNMGNT  382 (388)
T ss_dssp             HHHHHHHHHHHHT-TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTC-CHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             chhhhHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            5555555544443 5555555555555555555555555555555555543 5555555555555555555555555555


Q ss_pred             HHHcC
Q 029199          164 LWETE  168 (197)
Q Consensus       164 ~~~~g  168 (197)
                      |.++|
T Consensus       383 ~~~~~  387 (388)
T d1w3ba_         383 LKEMQ  387 (388)
T ss_dssp             HHHTC
T ss_pred             HHHcC
Confidence            55554

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=2.5e-19  Score=124.37  Aligned_cols=101  Identities=19%  Similarity=0.211  Sum_probs=96.7

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 029199           63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATY  142 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~  142 (197)
                      .|++++|+.+|+++++.+|+++.+|.++|.++.. +|++++|+..|+++++++|+++.+++++|.++..+|+ +++|+.+
T Consensus        16 ~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~-~~~A~~~   93 (117)
T d1elwa_          16 VGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAK-KGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR-FEEAKRT   93 (117)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhcCCcchhhhhcccccccc-cccccccchhhhhHHHhccchhhHHHHHHHHHHHccC-HHHHHHH
Confidence            5999999999999999999999999999988887 9999999999999999999999999999999999885 9999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHH
Q 029199          143 YERAVHASPEDSHVHASYAGFLW  165 (197)
Q Consensus       143 ~~~al~~~p~~~~~~~~la~~~~  165 (197)
                      |+++++++|+++.++..++.+..
T Consensus        94 ~~~a~~~~p~~~~~~~~l~~l~~  116 (117)
T d1elwa_          94 YEEGLKHEANNPQLKEGLQNMEA  116 (117)
T ss_dssp             HHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCHHHHHHHHHHhC
Confidence            99999999999999999988753

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=8e-20  Score=141.19  Aligned_cols=147  Identities=11%  Similarity=0.041  Sum_probs=128.2

Q ss_pred             chhHHHHHHHHhhhcCccccc----CCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhC
Q 029199            5 ALSEEVKVMEALWNAGFEQER----GTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEEN   80 (197)
Q Consensus         5 ~~~~~~~~~~a~~~~~~~~~~----~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~   80 (197)
                      .+...++.+.++..++..+..    +|..+.+++.+|..+...                    |++++|+..|+++++++
T Consensus         8 ~~~~~~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~--------------------g~~~~A~~~~~~al~l~   67 (259)
T d1xnfa_           8 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSL--------------------GLRALARNDFSQALAIR   67 (259)
T ss_dssp             CCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHHHHC
T ss_pred             cccccHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHC--------------------CCHHHHHHHHHHhhccC
Confidence            344556667777776666654    344567999999998874                    99999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 029199           81 PGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASY  160 (197)
Q Consensus        81 P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  160 (197)
                      |+++.+|+++|.++.. +|++++|+.+|+++++++|+++.+++++|.++..+|+ +++|+++|+++++++|++...+..+
T Consensus        68 p~~~~a~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~~  145 (259)
T d1xnfa_          68 PDMPEVFNYLGIYLTQ-AGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGR-DKLAQDDLLAFYQDDPNDPFRSLWL  145 (259)
T ss_dssp             CCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CCCHHHHhhhchHHHH-HHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhh-HHHHHHHHHHHHhhccccHHHHHHH
Confidence            9999999999987777 9999999999999999999999999999999999885 9999999999999999999999999


Q ss_pred             HHHHHHcCCcccc
Q 029199          161 AGFLWETEEDNDE  173 (197)
Q Consensus       161 a~~~~~~g~~~ea  173 (197)
                      +.+....+..+..
T Consensus       146 ~~~~~~~~~~~~~  158 (259)
T d1xnfa_         146 YLAEQKLDEKQAK  158 (259)
T ss_dssp             HHHHHHHCHHHHH
T ss_pred             HHHHHHhhhHHHH
Confidence            9888888765554

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1e-20  Score=152.57  Aligned_cols=156  Identities=11%  Similarity=0.071  Sum_probs=139.6

Q ss_pred             CcchhHHHH-HHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCC
Q 029199            3 GTALSEEVK-VMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENP   81 (197)
Q Consensus         3 ~~~~~~~~~-~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P   81 (197)
                      |.+|...++ +.+|+..+..+++.+|++..+|..+|..+..+                    |++++|++.|+++++++|
T Consensus        84 ~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l--------------------~~~~eAl~~~~kal~~dp  143 (315)
T d2h6fa1          84 RVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWL--------------------RDPSQELEFIADILNQDA  143 (315)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH--------------------TCCTTHHHHHHHHHHHCT
T ss_pred             HHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhh--------------------ccHHHHHHHHhhhhhhhh
Confidence            667777776 89999999999999999999999999999885                    889999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHhCCCCHHH
Q 029199           82 GNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHND-----QDRAATYYERAVHASPEDSHV  156 (197)
Q Consensus        82 ~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~-----~~~A~~~~~~al~~~p~~~~~  156 (197)
                      ++..+|.++|.++.. .|++++|+.+|+++++++|++..+|+++|.++...++.     +++|++++.+++.++|+++.+
T Consensus       144 ~n~~a~~~~~~~~~~-~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~  222 (315)
T d2h6fa1         144 KNYHAWQHRQWVIQE-FKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESA  222 (315)
T ss_dssp             TCHHHHHHHHHHHHH-HTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred             cchHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHH
Confidence            999999999977777 99999999999999999999999999999998876652     579999999999999999999


Q ss_pred             HHHHHHHHHHcCCccccccCCCcc
Q 029199          157 HASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       157 ~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      |.+++.++...| .+++...+..+
T Consensus       223 ~~~l~~ll~~~~-~~~~~~~~~~~  245 (315)
T d2h6fa1         223 WNYLKGILQDRG-LSKYPNLLNQL  245 (315)
T ss_dssp             HHHHHHHHTTTC-GGGCHHHHHHH
T ss_pred             HHHHHHHHHhcC-hHHHHHHHHHH
Confidence            999999876654 46665555543

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=8.3e-19  Score=127.56  Aligned_cols=109  Identities=19%  Similarity=0.157  Sum_probs=100.0

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 029199           63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATY  142 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~  142 (197)
                      .|++++|+.+|+++++++|+++.+|+++|.++.. +|++++|+.+|+++++++|+++.++.++|.++..+|+ +++|+.+
T Consensus        23 ~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~-~~eA~~~  100 (159)
T d1a17a_          23 AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLR-TECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK-FRAALRD  100 (159)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHH
T ss_pred             cCCHHHHHHHhhhccccchhhhhhhhhhHHHHHh-ccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCC-HHHHHHH
Confidence            5999999999999999999999999999988887 9999999999999999999999999999999999885 9999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHc--CCcccc
Q 029199          143 YERAVHASPEDSHVHASYAGFLWET--EEDNDE  173 (197)
Q Consensus       143 ~~~al~~~p~~~~~~~~la~~~~~~--g~~~ea  173 (197)
                      |++++.++|+++.++..++.+....  +.++++
T Consensus       101 ~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a  133 (159)
T d1a17a_         101 YETVVKVKPHDKDAKMKYQECNKIVKQKAFERA  133 (159)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999988775443  344444

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=2.4e-20  Score=144.18  Aligned_cols=157  Identities=11%  Similarity=-0.041  Sum_probs=133.9

Q ss_pred             CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCC
Q 029199            3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPG   82 (197)
Q Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~   82 (197)
                      |++|...|++.+|+..|..+++.+|+++.+|...|..+..                    .|++++|+++|+++++++|+
T Consensus        44 G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~--------------------~g~~~~A~~~~~~al~~~p~  103 (259)
T d1xnfa_          44 GVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQ--------------------AGNFDAAYEAFDSVLELDPT  103 (259)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHH--------------------HHHHHHhhhhhhHHHHHHhh
Confidence            7889999999999999999999999999999999999877                    49999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC----------------------------
Q 029199           83 NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHN----------------------------  134 (197)
Q Consensus        83 ~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~----------------------------  134 (197)
                      ++.+|+++|.++.. +|++++|+..|+++++++|+++.....++......+.                            
T Consensus       104 ~~~a~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (259)
T d1xnfa_         104 YNYAHLNRGIALYY-GGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYL  182 (259)
T ss_dssp             CTHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHT
T ss_pred             hhhhHHHHHHHHHH-HhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhHHHHHH
Confidence            99999999988877 9999999999999999999999988877765544332                            


Q ss_pred             -------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          135 -------DQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       135 -------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                             .++.+...+...+...|..+.+++++|.++..+|++++|...|++.
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  235 (259)
T d1xnfa_         183 GNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLA  235 (259)
T ss_dssp             TSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence                   1223333334444445666778889999999999999999999884

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=3.2e-18  Score=136.04  Aligned_cols=146  Identities=12%  Similarity=0.058  Sum_probs=126.7

Q ss_pred             hhHHHHHHHHhhhcCcccccCCCC--hhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCC
Q 029199            6 LSEEVKVMEALWNAGFEQERGTVG--QEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGN   83 (197)
Q Consensus         6 ~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~   83 (197)
                      +...+...+|+..|..+++.+|+.  +.++...|..+..                    .|++++|+.+|++++..+|++
T Consensus       146 ~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~--------------------~~~~~~A~~~~~~al~~~p~~  205 (323)
T d1fcha_         146 LLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNL--------------------SGEYDKAVDCFTAALSVRPND  205 (323)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHH--------------------HHHHhhhhccccccccccccc
Confidence            345677888999998888888875  5667777776655                    499999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-------
Q 029199           84 PLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHV-------  156 (197)
Q Consensus        84 ~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~-------  156 (197)
                      +.+|+++|.++.. .|++++|+++|+++++++|+++.+++++|.++..+|+ +++|+++|++|++++|++..+       
T Consensus       206 ~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~-~~~A~~~~~~al~l~p~~~~~~~~~~~~  283 (323)
T d1fcha_         206 YLLWNKLGATLAN-GNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGA-HREAVEHFLEALNMQRKSRGPRGEGGAM  283 (323)
T ss_dssp             HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHTC------CCCC
T ss_pred             ccchhhhhhcccc-cccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCcChhhhhhhHHH
Confidence            9999999988877 9999999999999999999999999999999999885 999999999999999988764       


Q ss_pred             ----HHHHHHHHHHcCCcccc
Q 029199          157 ----HASYAGFLWETEEDNDE  173 (197)
Q Consensus       157 ----~~~la~~~~~~g~~~ea  173 (197)
                          |.+++.++..+|+.+..
T Consensus       284 ~~~~~~~l~~al~~~~~~d~~  304 (323)
T d1fcha_         284 SENIWSTLRLALSMLGQSDAY  304 (323)
T ss_dssp             CHHHHHHHHHHHHHHTCGGGH
T ss_pred             HHHHHHHHHHHHHHcCCHHHH
Confidence                56678888888888765

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.74  E-value=1.4e-18  Score=125.03  Aligned_cols=112  Identities=17%  Similarity=0.188  Sum_probs=98.4

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---------hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 029199           62 SGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQ---------SKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWEL  132 (197)
Q Consensus        62 ~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~---------~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~  132 (197)
                      ..+.+++|++.|+++++++|+++.+++++|.++..         ..+.+++|+..|+++++++|+++.+++++|.+|..+
T Consensus         9 r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~   88 (145)
T d1zu2a1           9 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF   88 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHc
Confidence            34779999999999999999999999999988774         135668999999999999999999999999999876


Q ss_pred             cC----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcccc
Q 029199          133 HN----------DQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDE  173 (197)
Q Consensus       133 ~~----------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea  173 (197)
                      |+          .+++|+++|+++++++|++..++..++.+....+.+.+.
T Consensus        89 g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e~  139 (145)
T d1zu2a1          89 AFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEA  139 (145)
T ss_dssp             HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHHH
T ss_pred             ccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            52          368999999999999999999999999998766655554

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.7e-17  Score=124.56  Aligned_cols=146  Identities=12%  Similarity=0.030  Sum_probs=112.1

Q ss_pred             CCcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCC
Q 029199            2 AGTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENP   81 (197)
Q Consensus         2 ~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P   81 (197)
                      +|+.+.+.+++.+|+..|..   ..|.++.+++..|.....                    .|++++|+++|+++++++|
T Consensus        11 ~g~~~~~~~d~~~Al~~~~~---i~~~~~~~~~nlG~~~~~--------------------~g~~~~A~~~~~kAl~ldp   67 (192)
T d1hh8a_          11 EGVLAADKKDWKGALDAFSA---VQDPHSRICFNIGCMYTI--------------------LKNMTEAEKAFTRSINRDK   67 (192)
T ss_dssp             HHHHHHHTTCHHHHHHHHHT---SSSCCHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHCCCHHHHHHHHHh---cCCCCHHHHHHHHHHHHH--------------------cCCchhHHHHHHHHHHHhh
Confidence            36677788888888888865   355677888888888766                    3888888888888888888


Q ss_pred             CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC----------------HHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 029199           82 GNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGD----------------GEILSQYAKLVWELHNDQDRAATYYER  145 (197)
Q Consensus        82 ~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~----------------~~~~~~lg~~l~~~~~~~~~A~~~~~~  145 (197)
                      +++.+|+++|.+++. +|++++|+..|++++...|.+                ..+++++|.++..+++ +++|++.|++
T Consensus        68 ~~~~a~~~~g~~~~~-~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~-~~~A~~~l~~  145 (192)
T d1hh8a_          68 HLAVAYFQRGMLYYQ-TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEE-WKKAEEQLAL  145 (192)
T ss_dssp             TCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTC-HHHHHHHHHH
T ss_pred             hhhhhHHHHHHHHHh-hccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCC-HHHHHHHHHH
Confidence            888888888877766 888888888888888876654                3677888888888774 8888888888


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCccc
Q 029199          146 AVHASPEDSHVHASYAGFLWETEEDND  172 (197)
Q Consensus       146 al~~~p~~~~~~~~la~~~~~~g~~~e  172 (197)
                      ++.+.|+........+......+...+
T Consensus       146 A~~~~~~~~~~~~~~Al~~~~~~~~~~  172 (192)
T d1hh8a_         146 ATSMKSEPRHSKIDKAMECVWKQKLYE  172 (192)
T ss_dssp             HHTTCCSGGGGHHHHHHHHHHTTCCCC
T ss_pred             HHhcCCCcchHHHHHHHHHHHhhhhCC
Confidence            888888765555555554444444333

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.74  E-value=4e-19  Score=132.54  Aligned_cols=100  Identities=17%  Similarity=0.122  Sum_probs=89.8

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 029199           63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATY  142 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~  142 (197)
                      .|++++|+..|+++++++|+++.+|.++|.++.. .|++++|+.+|++|++++|+++.+|+++|.++..+|+ +++|+.+
T Consensus        17 ~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~-~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~l~~-~~~A~~~   94 (201)
T d2c2la1          17 GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK-MQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMES-YDEAIAN   94 (201)
T ss_dssp             TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTC-HHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhh-hhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHCCC-HHHHHHH
Confidence            6999999999999999999999999999988877 9999999999999999999999999999999999985 9999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHH
Q 029199          143 YERAVHASPEDSHVHASYAGFL  164 (197)
Q Consensus       143 ~~~al~~~p~~~~~~~~la~~~  164 (197)
                      |++++.++|++...+...+...
T Consensus        95 ~~~al~l~p~~~~~~~~~~~~~  116 (201)
T d2c2la1          95 LQRAYSLAKEQRLNFGDDIPSA  116 (201)
T ss_dssp             HHHHHHHHHHTTCCCCSHHHHH
T ss_pred             HHHHHHhCcccHHHHHHHHHHH
Confidence            9999999886654443333333

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=2.2e-17  Score=123.94  Aligned_cols=113  Identities=15%  Similarity=0.070  Sum_probs=102.8

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 029199           63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATY  142 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~  142 (197)
                      .|++++|++.|++   +.|.++.+|+++|.+++. +|++++|+.+|++|++++|+++.+++++|.++..+|+ +++|++.
T Consensus        18 ~~d~~~Al~~~~~---i~~~~~~~~~nlG~~~~~-~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~-~~~A~~~   92 (192)
T d1hh8a_          18 KKDWKGALDAFSA---VQDPHSRICFNIGCMYTI-LKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEK-YDLAIKD   92 (192)
T ss_dssp             TTCHHHHHHHHHT---SSSCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHH
T ss_pred             CCCHHHHHHHHHh---cCCCCHHHHHHHHHHHHH-cCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcc-HHHHHHH
Confidence            4999999999986   467789999999988887 9999999999999999999999999999999999885 9999999


Q ss_pred             HHHHHHhCCCC----------------HHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          143 YERAVHASPED----------------SHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       143 ~~~al~~~p~~----------------~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      |++++...|.+                ..+++++|.++..+|++++|.+.+.+.
T Consensus        93 ~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A  146 (192)
T d1hh8a_          93 LKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA  146 (192)
T ss_dssp             HHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            99999876654                478899999999999999998877764

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=5.7e-18  Score=117.33  Aligned_cols=107  Identities=15%  Similarity=0.085  Sum_probs=101.1

Q ss_pred             CCcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCC
Q 029199            2 AGTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENP   81 (197)
Q Consensus         2 ~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P   81 (197)
                      +|+.+-+.|++.+|+..|..+++.+|.++.+|..+|..+...                    |++++|+..|+++++++|
T Consensus         9 ~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~--------------------~~~~~A~~~~~~al~~~p   68 (117)
T d1elwa_           9 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKK--------------------GDYQKAYEDGCKTVDLKP   68 (117)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH--------------------TCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhccccccccc--------------------ccccccchhhhhHHHhcc
Confidence            478888999999999999999999999999999999998874                    999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 029199           82 GNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLV  129 (197)
Q Consensus        82 ~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l  129 (197)
                      +++.+|+++|.++.. +|++++|+.+|+++++++|+++.++..++.+-
T Consensus        69 ~~~~~~~~~g~~~~~-~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~  115 (117)
T d1elwa_          69 DWGKGYSRKAAALEF-LNRFEEAKRTYEEGLKHEANNPQLKEGLQNME  115 (117)
T ss_dssp             TCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence            999999999988777 99999999999999999999999999998763

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=3.8e-17  Score=114.22  Aligned_cols=104  Identities=12%  Similarity=0.097  Sum_probs=92.6

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHcCCHHHH
Q 029199           64 GDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQ--SKQDLPKAEEYYSRAILADPGD--GEILSQYAKLVWELHNDQDRA  139 (197)
Q Consensus        64 g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~--~~g~~~~A~~~~~~al~l~P~~--~~~~~~lg~~l~~~~~~~~~A  139 (197)
                      +++++|.+.|++++.++|+++.+++++|.++..  ..+++++|+..|+++++.+|++  +.+++++|.+++.+| ++++|
T Consensus        13 ~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g-~~~~A   91 (122)
T d1nzna_          13 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLK-EYEKA   91 (122)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTT-CHHHH
T ss_pred             HHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHh-hhHHH
Confidence            789999999999999999999999999987764  1345668999999999999866  458999999999988 59999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 029199          140 ATYYERAVHASPEDSHVHASYAGFLWETE  168 (197)
Q Consensus       140 ~~~~~~al~~~p~~~~~~~~la~~~~~~g  168 (197)
                      +++|+++|+++|++..+...++.+..+++
T Consensus        92 ~~~~~~aL~~~P~~~~A~~l~~~I~~~~~  120 (122)
T d1nzna_          92 LKYVRGLLQTEPQNNQAKELERLIDKAMK  120 (122)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCcCCHHHHHHHHHHHHHHc
Confidence            99999999999999999999998877653

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.69  E-value=1.4e-16  Score=115.19  Aligned_cols=105  Identities=16%  Similarity=0.121  Sum_probs=95.7

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 029199           63 GGDSQGVEEYYKKMVEENPGNP----------------LFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYA  126 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~P~~~----------------~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg  126 (197)
                      .|++.+|+..|++++...|...                .++.|+|.+++. +|++++|+.+|+++|+++|+++.+++++|
T Consensus        30 ~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~-l~~~~~Al~~~~~al~~~p~~~ka~~~~g  108 (153)
T d2fbna1          30 KNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNK-NKDYPKAIDHASKVLKIDKNNVKALYKLG  108 (153)
T ss_dssp             TTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHH-hcccchhhhhhhccccccchhhhhhHHhH
Confidence            5999999999999998776542                467899988887 99999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 029199          127 KLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEE  169 (197)
Q Consensus       127 ~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  169 (197)
                      .++..+|+ +++|+.+|+++++++|+|+.+...+..+..++++
T Consensus       109 ~~~~~lg~-~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl~~  150 (153)
T d2fbna1         109 VANMYFGF-LEEAKENLYKAASLNPNNLDIRNSYELCVNKLKE  150 (153)
T ss_dssp             HHHHHHTC-HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            99999995 9999999999999999999999999998877643

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.68  E-value=7.9e-17  Score=119.80  Aligned_cols=96  Identities=17%  Similarity=0.178  Sum_probs=90.5

Q ss_pred             CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 029199           83 NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAG  162 (197)
Q Consensus        83 ~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  162 (197)
                      ++..+...|..++. .|++++|+..|+++++++|+++.+|+++|.+|..+|+ +++|+.+|++|++++|+++.+|+++|.
T Consensus         3 ~a~~l~~~Gn~~~~-~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~-~~~Ai~~~~~al~l~p~~~~a~~~lg~   80 (201)
T d2c2la1           3 SAQELKEQGNRLFV-GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQ-PEQALADCRRALELDGQSVKAHFFLGQ   80 (201)
T ss_dssp             CHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhh-hhhhhHHHHHHHHhCCCcHHHHHHHHH
Confidence            45567789999998 9999999999999999999999999999999999885 999999999999999999999999999


Q ss_pred             HHHHcCCccccccCCCcc
Q 029199          163 FLWETEEDNDECDAPSEL  180 (197)
Q Consensus       163 ~~~~~g~~~ea~~~~~~~  180 (197)
                      ++..+|++++|...|+++
T Consensus        81 ~~~~l~~~~~A~~~~~~a   98 (201)
T d2c2la1          81 CQLEMESYDEAIANLQRA   98 (201)
T ss_dssp             HHHHTTCHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHH
Confidence            999999999999888874

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=2.7e-16  Score=115.64  Aligned_cols=109  Identities=16%  Similarity=0.101  Sum_probs=99.6

Q ss_pred             CCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 029199           63 GGDSQGVEEYYKKMVEENPGN---------------PLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAK  127 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~P~~---------------~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~  127 (197)
                      .|++++|+.+|+++++..|..               ..++.++|.+++. +|++++|+.+++++++++|+++.+++++|.
T Consensus        26 ~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k-~~~~~~A~~~~~~al~~~p~~~~a~~~~g~  104 (170)
T d1p5qa1          26 EGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLK-LQAFSAAIESCNKALELDSNNEKGLSRRGE  104 (170)
T ss_dssp             HTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHh-hhhcccccchhhhhhhccccchhhhHHHHH
Confidence            499999999999999998865               3567889988887 999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcccc
Q 029199          128 LVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDE  173 (197)
Q Consensus       128 ~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea  173 (197)
                      +++.+|+ +++|+.+|+++++++|+|+.+...++.+...+++..+.
T Consensus       105 ~~~~~g~-~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~  149 (170)
T d1p5qa1         105 AHLAVND-FELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR  149 (170)
T ss_dssp             HHHHTTC-HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhh-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999885 99999999999999999999999999998887766654

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.68  E-value=4.7e-17  Score=130.72  Aligned_cols=156  Identities=8%  Similarity=-0.065  Sum_probs=131.9

Q ss_pred             HHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 029199           13 MEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQ   92 (197)
Q Consensus        13 ~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~   92 (197)
                      ++|+..+.++++.+|+++.+|..++..+..++.          .+......|++++|+.+|+++++.+|+++.+|+++|.
T Consensus        46 ~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~----------~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~  115 (334)
T d1dcea1          46 ESVLELTSQILGANPDFATLWNCRREVLQHLET----------EKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCW  115 (334)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHT----------TSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhh----------hcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhH
Confidence            689999999999999999999888866554321          0111222367899999999999999999999999996


Q ss_pred             HHHHhcC--CHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 029199           93 FLYQSKQ--DLPKAEEYYSRAILADPGDGEILS-QYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEE  169 (197)
Q Consensus        93 ~l~~~~g--~~~~A~~~~~~al~l~P~~~~~~~-~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  169 (197)
                      ++.. .+  ++++|+..++++++++|++..++. ..|.++...+ .+++|+.+++++++++|++..+|+++|.++..+|+
T Consensus       116 ~~~~-~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~-~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~  193 (334)
T d1dcea1         116 LLSR-LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAV-APAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHP  193 (334)
T ss_dssp             HHHT-CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCC-CHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSC
T ss_pred             HHHH-hccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhcc-ccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcC
Confidence            6665 65  489999999999999999999875 5566666655 59999999999999999999999999999999999


Q ss_pred             ccccccCCCcc
Q 029199          170 DNDECDAPSEL  180 (197)
Q Consensus       170 ~~ea~~~~~~~  180 (197)
                      +++|...++..
T Consensus       194 ~~~A~~~~~~~  204 (334)
T d1dcea1         194 QPDSGPQGRLP  204 (334)
T ss_dssp             CCCSSSCCSSC
T ss_pred             HHHHHHHHHHh
Confidence            99999888874

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.68  E-value=1.4e-16  Score=116.69  Aligned_cols=110  Identities=18%  Similarity=0.166  Sum_probs=100.1

Q ss_pred             CCCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 029199           63 GGDSQGVEEYYKKMVEE----------------NPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYA  126 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~----------------~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg  126 (197)
                      .|++++|++.|+++++.                +|....++.++|.++.. +|++++|+..|+++++++|+++.+++++|
T Consensus        40 ~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-~~~~~~Ai~~~~~al~~~p~~~~a~~~~g  118 (169)
T d1ihga1          40 SQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLK-MSDWQGAVDSCLEALEIDPSNTKALYRRA  118 (169)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHh-hcccchhhhhhhhhhhhhhhhhhHHHhHH
Confidence            59999999999999863                57778889999977777 99999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccc
Q 029199          127 KLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDEC  174 (197)
Q Consensus       127 ~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~  174 (197)
                      .++..+|+ +++|+..|+++++++|+|+.++..++.+..++....++.
T Consensus       119 ~~~~~l~~-~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~~~  165 (169)
T d1ihga1         119 QGWQGLKE-YDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE  165 (169)
T ss_dssp             HHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHccC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999985 999999999999999999999999999988876665543

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.67  E-value=2.9e-16  Score=107.77  Aligned_cols=83  Identities=11%  Similarity=0.015  Sum_probs=67.6

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 029199           63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATY  142 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~  142 (197)
                      .|++++|+.+|+++++++|+++.+|.++|.++.. .|++++|+.+|+++++++|+++.+++++|.++...| ++++|+++
T Consensus        29 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g-~~~~A~~~  106 (112)
T d1hxia_          29 LANLAEAALAFEAVCQKEPEREEAWRSLGLTQAE-NEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH-NANAALAS  106 (112)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred             HhhhHHHHHHHhhhcccccccchhhhhhhhhhhh-hhhHHHhhcccccccccccccccchHHHHHHHHHCC-CHHHHHHH
Confidence            4888888888888888888888888888866665 888888888888888888888888888888888877 48888888


Q ss_pred             HHHHH
Q 029199          143 YERAV  147 (197)
Q Consensus       143 ~~~al  147 (197)
                      +++.|
T Consensus       107 l~~~l  111 (112)
T d1hxia_         107 LRAWL  111 (112)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            88765

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.67  E-value=1e-16  Score=110.07  Aligned_cols=92  Identities=15%  Similarity=0.056  Sum_probs=86.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 029199           86 FLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLW  165 (197)
Q Consensus        86 ~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  165 (197)
                      .++++|..++. .|++++|+.+|+++++++|+++.+|.++|.++...++ +++|+.+|+++++++|+++.+|+++|.++.
T Consensus        18 ~~~~~g~~~~~-~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~-~~~A~~~~~~al~~~p~~~~a~~~la~~y~   95 (112)
T d1hxia_          18 NPMEEGLSMLK-LANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEK-DGLAIIALNHARMLDPKDIAVHAALAVSHT   95 (112)
T ss_dssp             CHHHHHHHHHH-TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-HhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhh-HHHhhcccccccccccccccchHHHHHHHH
Confidence            35778977777 9999999999999999999999999999999999885 999999999999999999999999999999


Q ss_pred             HcCCccccccCCCc
Q 029199          166 ETEEDNDECDAPSE  179 (197)
Q Consensus       166 ~~g~~~ea~~~~~~  179 (197)
                      .+|++++|.+.+++
T Consensus        96 ~~g~~~~A~~~l~~  109 (112)
T d1hxia_          96 NEHNANAALASLRA  109 (112)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHH
Confidence            99999999887765

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.66  E-value=5.2e-17  Score=130.46  Aligned_cols=159  Identities=8%  Similarity=-0.114  Sum_probs=137.3

Q ss_pred             CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCC
Q 029199            3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPG   82 (197)
Q Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~   82 (197)
                      |..+...+++.+|+..+...++.+|.++..|+.+|..+..++.                  +++++|+..++++++++|+
T Consensus        80 ~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~------------------~~~~~a~~~~~~al~~~~~  141 (334)
T d1dcea1          80 KSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPE------------------PNWARELELCARFLEADER  141 (334)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSS------------------CCHHHHHHHHHHHHHHCTT
T ss_pred             cchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhcc------------------ccHHHHHHHHHHHHhhCch
Confidence            5667788899999999999999999999999999998877643                  6789999999999999999


Q ss_pred             CHHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC---------------------------
Q 029199           83 NPLFLS-NYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHN---------------------------  134 (197)
Q Consensus        83 ~~~~~~-~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~---------------------------  134 (197)
                      +..+|. ..| ..+...+++++|+..++++++++|++..+|+++|.++..+++                           
T Consensus       142 ~~~~~~~~~~-~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~  220 (334)
T d1dcea1         142 NFHCWDYRRF-VAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF  220 (334)
T ss_dssp             CHHHHHHHHH-HHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhHHH-HHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHHHHHHH
Confidence            988875 455 444448999999999999999999999999999987766542                           


Q ss_pred             ------------------------------------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCC
Q 029199          135 ------------------------------------DQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPS  178 (197)
Q Consensus       135 ------------------------------------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~  178 (197)
                                                          ++++|+..+.+++..+|++..++..+|.++..+|++++|++.++
T Consensus       221 l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~  300 (334)
T d1dcea1         221 TDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFS  300 (334)
T ss_dssp             HCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHH
T ss_pred             hcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence                                                35677788888888889999999999999999999999999999


Q ss_pred             cc
Q 029199          179 EL  180 (197)
Q Consensus       179 ~~  180 (197)
                      ++
T Consensus       301 ~a  302 (334)
T d1dcea1         301 TL  302 (334)
T ss_dssp             HH
T ss_pred             HH
Confidence            85

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=2.9e-16  Score=113.83  Aligned_cols=109  Identities=10%  Similarity=-0.083  Sum_probs=101.5

Q ss_pred             CCcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCC
Q 029199            2 AGTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENP   81 (197)
Q Consensus         2 ~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P   81 (197)
                      +|+.+-..+++.+|+..|..+++.+|+++..|+..|..+..+                    |++++|+..|+++++++|
T Consensus        16 ~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~--------------------~~~~~A~~~~~kal~~~p   75 (159)
T d1a17a_          16 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRT--------------------ECYGYALGDATRAIELDK   75 (159)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhc--------------------cccchHHHHHHHHHHHcc
Confidence            477888899999999999999999999999999999998774                    999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 029199           82 GNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWE  131 (197)
Q Consensus        82 ~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~  131 (197)
                      ++..+|.++|.++.. +|++++|+.+|+++++++|+++.++..++.+...
T Consensus        76 ~~~~a~~~~g~~~~~-~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~  124 (159)
T d1a17a_          76 KYIKGYYRRAASNMA-LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKI  124 (159)
T ss_dssp             TCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            999999999988887 9999999999999999999999999988876433

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.64  E-value=5.1e-16  Score=113.76  Aligned_cols=108  Identities=17%  Similarity=0.157  Sum_probs=97.8

Q ss_pred             CCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 029199           63 GGDSQGVEEYYKKMVEENPGN---------------PLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAK  127 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~P~~---------------~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~  127 (197)
                      .|++.+|+.+|++++...|..               ..++.|+|.+++. +|++++|+.+++++++++|+++.+++++|.
T Consensus        28 ~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~-l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~  106 (168)
T d1kt1a1          28 GGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLK-LREYTKAVECCDKALGLDSANEKGLYRRGE  106 (168)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHH-hhhcccchhhhhhhhhcccchHHHHHHHHH
Confidence            499999999999999865443               3567889988887 999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccc
Q 029199          128 LVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDND  172 (197)
Q Consensus       128 ~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~e  172 (197)
                      ++..+|+ +++|+.+|++++.++|+|+.++..++.+...++++.+
T Consensus       107 ~~~~l~~-~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e  150 (168)
T d1kt1a1         107 AQLLMNE-FESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNE  150 (168)
T ss_dssp             HHHHTTC-HHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHH
Confidence            9999885 9999999999999999999999999999888876655

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=2.9e-15  Score=104.97  Aligned_cols=99  Identities=18%  Similarity=0.256  Sum_probs=82.9

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHHcC
Q 029199           62 SGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGE-------ILSQYAKLVWELHN  134 (197)
Q Consensus        62 ~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~-------~~~~lg~~l~~~~~  134 (197)
                      ..|++++|+.+|+++++++|+++.++.++|.++.. +|++++|+.+|+++++++|+++.       ++.++|.++..++ 
T Consensus        16 ~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~~~~~-   93 (128)
T d1elra_          16 KKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFE-KGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEE-   93 (128)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTT-
T ss_pred             HcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHH-cCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHhC-
Confidence            35999999999999999999999999999988887 99999999999999999998875       4555666777766 


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 029199          135 DQDRAATYYERAVHASPEDSHVHASYAGF  163 (197)
Q Consensus       135 ~~~~A~~~~~~al~~~p~~~~~~~~la~~  163 (197)
                      ++++|+++|++++..+|+ +.+...+..+
T Consensus        94 ~~~~A~~~~~kal~~~~~-~~~~~~l~~~  121 (128)
T d1elra_          94 KYKDAIHFYNKSLAEHRT-PDVLKKCQQA  121 (128)
T ss_dssp             CHHHHHHHHHHHHHHCCC-HHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcCCC-HHHHHHHHHH
Confidence            599999999999998875 5565555443

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.58  E-value=1.7e-15  Score=108.55  Aligned_cols=120  Identities=8%  Similarity=-0.018  Sum_probs=99.4

Q ss_pred             CCcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCC
Q 029199            2 AGTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENP   81 (197)
Q Consensus         2 ~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P   81 (197)
                      .++.|...+++++|+..|..+++.+|+++..++..|..+...+....          .....+.+++|++.|+++++++|
T Consensus         3 ~~~~~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~----------~~e~~~~~~~Ai~~~~kAl~l~P   72 (145)
T d1zu2a1           3 TETEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHS----------ISDAKQMIQEAITKFEEALLIDP   72 (145)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSC----------HHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             hhHHHHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhh----------hhHHHHHHHHHHHHHHHHHHhcc
Confidence            36788999999999999999999999999999999998765321100          00012567899999999999999


Q ss_pred             CCHHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 029199           82 GNPLFLSNYAQFLYQSKQ-----------DLPKAEEYYSRAILADPGDGEILSQYAKLVWEL  132 (197)
Q Consensus        82 ~~~~~~~~la~~l~~~~g-----------~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~  132 (197)
                      +++.+|+++|.++.. +|           .+++|+++|+++++++|++..++..++.+....
T Consensus        73 ~~~~a~~~lG~~y~~-~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~  133 (145)
T d1zu2a1          73 KKDEAVWCIGNAYTS-FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAP  133 (145)
T ss_dssp             TCHHHHHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHH
T ss_pred             hhhHHHhhHHHHHHH-cccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHH
Confidence            999999999988765 54           479999999999999999999999998775443

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=8.3e-15  Score=102.58  Aligned_cols=94  Identities=18%  Similarity=0.233  Sum_probs=83.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------HH
Q 029199           85 LFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSH-------VH  157 (197)
Q Consensus        85 ~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~-------~~  157 (197)
                      ..+.++|..++. .|++++|+.+|+++++++|+++.++.++|.++..+|+ +++|+..|++++.++|+++.       ++
T Consensus         5 ~~~k~~G~~~~~-~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~-~~~A~~~~~~al~l~~~~~~~~~~~a~~~   82 (128)
T d1elra_           5 LKEKELGNDAYK-KKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGD-YNKCRELCEKAIEVGRENREDYRQIAKAY   82 (128)
T ss_dssp             HHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCc-hHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            456789999998 9999999999999999999999999999999999995 99999999999999988765       56


Q ss_pred             HHHHHHHHHcCCccccccCCCcc
Q 029199          158 ASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       158 ~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      .++|.++..++++++|+..|.+.
T Consensus        83 ~~lg~~~~~~~~~~~A~~~~~ka  105 (128)
T d1elra_          83 ARIGNSYFKEEKYKDAIHFYNKS  105 (128)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHH
Confidence            66777888888999988887763

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=2e-14  Score=105.41  Aligned_cols=112  Identities=16%  Similarity=0.019  Sum_probs=95.4

Q ss_pred             CCcchhHHHHHHHHhhhcCcccccCCCCh---------------hhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCH
Q 029199            2 AGTALSEEVKVMEALWNAGFEQERGTVGQ---------------EMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDS   66 (197)
Q Consensus         2 ~~~~~~~~~~~~~a~~~~~~~~~~~p~~~---------------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   66 (197)
                      .|+.+-..+++.+|+..|..+++..|..+               .++...|..+..                    .|++
T Consensus        19 ~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k--------------------~~~~   78 (170)
T d1p5qa1          19 RGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLK--------------------LQAF   78 (170)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHH--------------------TTCH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHh--------------------hhhc
Confidence            37778888999999999998888777543               233444544444                    5999


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 029199           67 QGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHN  134 (197)
Q Consensus        67 ~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~  134 (197)
                      ++|+.+++++++++|+++.+|+.+|.+++. +|++++|+.+|+++++++|+|+.+...++.+...++.
T Consensus        79 ~~A~~~~~~al~~~p~~~~a~~~~g~~~~~-~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~  145 (170)
T d1p5qa1          79 SAAIESCNKALELDSNNEKGLSRRGEAHLA-VNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRR  145 (170)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHH
T ss_pred             ccccchhhhhhhccccchhhhHHHHHHHHH-hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999988887 9999999999999999999999999999998776664

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=8.8e-15  Score=101.94  Aligned_cols=111  Identities=10%  Similarity=0.053  Sum_probs=95.9

Q ss_pred             chhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCC-
Q 029199            5 ALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGN-   83 (197)
Q Consensus         5 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~-   83 (197)
                      .+-....+.+|...|...++.+|.++++++..|..+...+.                 .+++++|+..|+++++.+|++ 
T Consensus         8 ~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~-----------------~~d~~~Ai~~l~~~l~~~~~~~   70 (122)
T d1nzna_           8 ELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRY-----------------NDDIRKGIVLLEELLPKGSKEE   70 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSS-----------------HHHHHHHHHHHHHHTTTSCHHH
T ss_pred             HhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcc-----------------hHHHHHHHHHHHHHHhccCCch
Confidence            35567889999999999999999999999999998765321                 267788999999999999876 


Q ss_pred             -HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 029199           84 -PLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELH  133 (197)
Q Consensus        84 -~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~  133 (197)
                       ..+|+++|.+++. .|++++|+.+|+++|+++|++..+...++.+..+++
T Consensus        71 ~~~~~~~Lg~~y~~-~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~~  120 (122)
T d1nzna_          71 QRDYVFYLAVGNYR-LKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMK  120 (122)
T ss_dssp             HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHc
Confidence             4589999988777 999999999999999999999999999987766544

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=8e-14  Score=92.58  Aligned_cols=83  Identities=13%  Similarity=0.155  Sum_probs=74.2

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 029199           84 PLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGD-------GEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHV  156 (197)
Q Consensus        84 ~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~-------~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~  156 (197)
                      ++-.+++|.+++. .|++++|+.+|++|+++.|.+       +.++.++|.+++++|+ +++|+++|+++|+++|+++.+
T Consensus         5 addc~~lG~~~~~-~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~-~~~A~~~y~~aL~l~P~~~~a   82 (95)
T d1tjca_           5 AEDSFELGKVAYT-EADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGD-LDKALLLTKKLLELDPEHQRA   82 (95)
T ss_dssp             HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCC-hHHHHHHHHHHHHhCcCCHHH
Confidence            4567899988888 999999999999999997654       6889999999999885 999999999999999999999


Q ss_pred             HHHHHHHHHHcC
Q 029199          157 HASYAGFLWETE  168 (197)
Q Consensus       157 ~~~la~~~~~~g  168 (197)
                      +.|++.+...++
T Consensus        83 ~~Nl~~~~~~l~   94 (95)
T d1tjca_          83 NGNLKYFEYIMA   94 (95)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC
Confidence            999998876553

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=2.2e-14  Score=121.64  Aligned_cols=144  Identities=14%  Similarity=0.050  Sum_probs=100.5

Q ss_pred             hHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHH
Q 029199            7 SEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLF   86 (197)
Q Consensus         7 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~   86 (197)
                      ...+.+..+|..|......+|.+...+...|.....                    .|+.++|+..++++++.+|.  .+
T Consensus        97 ~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~--------------------~~~~~~A~~~~~~al~~~~~--~~  154 (497)
T d1ya0a1          97 AASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNK--------------------QTHTSAIVKPQSSSCSYICQ--HC  154 (497)
T ss_dssp             HHHHHHHHHHHHHTC---------------------------------------------------CCHHHHHHHH--HH
T ss_pred             HHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHh--------------------CCCHHHHHHHHHHHhCCCHH--HH
Confidence            345677888888888888889998888888887776                    48999999999999998874  67


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 029199           87 LSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWE  166 (197)
Q Consensus        87 ~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  166 (197)
                      +.++|.++.. .+++++|+.+|++|++++|+++.+++++|.++...|+ ..+|+.+|.+|+.++|..+.++.|++.++.+
T Consensus       155 ~~~LG~l~~~-~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~-~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~  232 (497)
T d1ya0a1         155 LVHLGDIARY-RNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGD-HLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTC-HHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-cccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCC-HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence            8899977776 9999999999999999999999999999999998774 8999999999999999999999999999998


Q ss_pred             cCCccccc
Q 029199          167 TEEDNDEC  174 (197)
Q Consensus       167 ~g~~~ea~  174 (197)
                      ..+..++.
T Consensus       233 ~~~~~~~~  240 (497)
T d1ya0a1         233 ALESRDEV  240 (497)
T ss_dssp             HTTSCCCC
T ss_pred             hhhhhhhh
Confidence            77665543

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.48  E-value=2.8e-14  Score=104.30  Aligned_cols=127  Identities=12%  Similarity=0.050  Sum_probs=102.1

Q ss_pred             CCcchhHHHHHHHHhhhcCcccccCCCCh---------------hhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCH
Q 029199            2 AGTALSEEVKVMEALWNAGFEQERGTVGQ---------------EMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDS   66 (197)
Q Consensus         2 ~~~~~~~~~~~~~a~~~~~~~~~~~p~~~---------------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   66 (197)
                      .|+.+-..|++.+|+..|..++...|...               .++..+|..+..                    .|++
T Consensus        21 ~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~--------------------l~~~   80 (168)
T d1kt1a1          21 KGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLK--------------------LREY   80 (168)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHH--------------------TTCH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHH--------------------hhhc
Confidence            37778888999999999888775444322               234455655555                    4999


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 029199           67 QGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERA  146 (197)
Q Consensus        67 ~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~a  146 (197)
                      ++|+..++++++++|++..+|+++|.++.. +|++++|+.+|+++++++|+|+.++..++.+...++...++..+.|.+.
T Consensus        81 ~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~-l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~~kk~~~~~  159 (168)
T d1kt1a1          81 TKAVECCDKALGLDSANEKGLYRRGEAQLL-MNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTYANM  159 (168)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhhhhhhcccchHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            999999999999999999999999988887 9999999999999999999999999999998777664334555666555


Q ss_pred             HHh
Q 029199          147 VHA  149 (197)
Q Consensus       147 l~~  149 (197)
                      ++.
T Consensus       160 f~~  162 (168)
T d1kt1a1         160 FKK  162 (168)
T ss_dssp             HHH
T ss_pred             Hhh
Confidence            543

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.47  E-value=1.3e-13  Score=109.56  Aligned_cols=158  Identities=13%  Similarity=0.102  Sum_probs=136.3

Q ss_pred             CCcchhHHHHHHHHhhhcCccccc-CCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhC
Q 029199            2 AGTALSEEVKVMEALWNAGFEQER-GTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEEN   80 (197)
Q Consensus         2 ~~~~~~~~~~~~~a~~~~~~~~~~-~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~   80 (197)
                      .|.+....+.+.++...|..+++. .|.++.+|+..+.....                    .|+++.|...|+++++..
T Consensus        70 ~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~--------------------~~~~~~a~~i~~~~l~~~  129 (308)
T d2onda1          70 KGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES--------------------RMKYEKVHSIYNRLLAIE  129 (308)
T ss_dssp             TSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHTSS
T ss_pred             HHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh--------------------cccHHHHHHHHHHHHHHh
Confidence            356667777888999999888875 67888888887776665                    489999999999999999


Q ss_pred             CCCH-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 029199           81 PGNP-LFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHAS  159 (197)
Q Consensus        81 P~~~-~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  159 (197)
                      |.+. .+|..++.+... .++++.|+..|+++++..|.+...+...+.......++.+.|...|++++..+|+++.+|..
T Consensus       130 ~~~~~~~w~~~~~~~~~-~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~  208 (308)
T d2onda1         130 DIDPTLVYIQYMKFARR-AEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLA  208 (308)
T ss_dssp             SSCTHHHHHHHHHHHHH-HHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             cCChHHHHHHHHHHHHH-cCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHH
Confidence            9775 478899977776 89999999999999999999999999999877666567899999999999999999999999


Q ss_pred             HHHHHHHcCCccccccCCCcc
Q 029199          160 YAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       160 la~~~~~~g~~~ea~~~~~~~  180 (197)
                      ++.++...|++++|...|++.
T Consensus       209 y~~~~~~~g~~~~aR~~fe~a  229 (308)
T d2onda1         209 YIDYLSHLNEDNNTRVLFERV  229 (308)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHcCChHHHHHHHHHH
Confidence            999999999999998888874

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.45  E-value=4e-14  Score=103.31  Aligned_cols=111  Identities=18%  Similarity=0.067  Sum_probs=92.8

Q ss_pred             CcchhHHHHHHHHhhhcCcccc----------------cCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCH
Q 029199            3 GTALSEEVKVMEALWNAGFEQE----------------RGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDS   66 (197)
Q Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~----------------~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   66 (197)
                      |+.+-..+++.+|+..|..+++                .+|....++..+|.....                    .|++
T Consensus        34 ~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~--------------------~~~~   93 (169)
T d1ihga1          34 GNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLK--------------------MSDW   93 (169)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHH--------------------TTCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHh--------------------hccc
Confidence            4555566777777777766653                345566677777777666                    4999


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 029199           67 QGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHN  134 (197)
Q Consensus        67 ~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~  134 (197)
                      ++|+..|+++++++|+++.+|+++|.++.. +|++++|+..|+++++++|+|+.+...++.+...+..
T Consensus        94 ~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~-l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~  160 (169)
T d1ihga1          94 QGAVDSCLEALEIDPSNTKALYRRAQGWQG-LKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKA  160 (169)
T ss_dssp             HHHHHHHHHHHTTCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             chhhhhhhhhhhhhhhhhhHHHhHHHHHHH-ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999988887 9999999999999999999999999999988776653

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.44  E-value=1.3e-13  Score=99.27  Aligned_cols=110  Identities=15%  Similarity=0.045  Sum_probs=90.9

Q ss_pred             CcchhHHHHHHHHhhhcCcccccCCCCh----------------hhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCH
Q 029199            3 GTALSEEVKVMEALWNAGFEQERGTVGQ----------------EMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDS   66 (197)
Q Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~----------------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   66 (197)
                      |+.+=..+++.+|+..|..++...|...                .++..+|..+..                    .|++
T Consensus        24 G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~--------------------l~~~   83 (153)
T d2fbna1          24 GNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNK--------------------NKDY   83 (153)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHH--------------------TTCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHH--------------------hccc
Confidence            6666677888888888877665544332                234455655555                    5999


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 029199           67 QGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELH  133 (197)
Q Consensus        67 ~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~  133 (197)
                      ++|+++++++++++|++..+|+++|.++.. +|++++|+.+|+++++++|+|+.+...++.+..+++
T Consensus        84 ~~Al~~~~~al~~~p~~~ka~~~~g~~~~~-lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl~  149 (153)
T d2fbna1          84 PKAIDHASKVLKIDKNNVKALYKLGVANMY-FGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLK  149 (153)
T ss_dssp             HHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred             chhhhhhhccccccchhhhhhHHhHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999999999999988888 999999999999999999999999999998766544

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.36  E-value=5.3e-13  Score=96.10  Aligned_cols=89  Identities=12%  Similarity=0.029  Sum_probs=77.6

Q ss_pred             CCCHHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-----------CH
Q 029199           63 GGDSQGVEEYYKKMVEENPGN------------PLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPG-----------DG  119 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~P~~------------~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~-----------~~  119 (197)
                      .|+|++|++.|+++++++|+.            ..+|.++|.++.. +|++++|+..+++++++.|.           ..
T Consensus        22 ~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~-lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  100 (156)
T d2hr2a1          22 AGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAG-LRSFDEALHSADKALHYFNRRGELNQDEGKLWI  100 (156)
T ss_dssp             HTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHH-cCccchhhHhhhhhhhcccccccccccccchhH
Confidence            399999999999999999875            3678999988887 99999999999999987553           23


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 029199          120 EILSQYAKLVWELHNDQDRAATYYERAVHASPED  153 (197)
Q Consensus       120 ~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~  153 (197)
                      .+++++|.+|..+|+ +++|+.+|++++++.|+.
T Consensus       101 ~a~~~~g~~~~~lg~-~eeA~~~~~~Al~l~~~~  133 (156)
T d2hr2a1         101 SAVYSRALALDGLGR-GAEAMPEFKKVVEMIEER  133 (156)
T ss_dssp             HHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHC
T ss_pred             HHHhhhHHHHHHHHH-HHHHHHHHHHHHHhhHHh
Confidence            478999999999996 999999999999997643

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.35  E-value=1.9e-13  Score=107.68  Aligned_cols=157  Identities=12%  Similarity=-0.001  Sum_probs=124.8

Q ss_pred             CcchhHHHHHHHHhhhcCcccccC------CCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHH
Q 029199            3 GTALSEEVKVMEALWNAGFEQERG------TVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKM   76 (197)
Q Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~~~------p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a   76 (197)
                      |++|...+++.+|+..|.++.+..      +.-+..+...|..+..                    .|++++|+++|+++
T Consensus        44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~--------------------~~~~~~A~~~~~~a  103 (290)
T d1qqea_          44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKS--------------------GGNSVNAVDSLENA  103 (290)
T ss_dssp             HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHH
T ss_pred             HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH--------------------hCCcHHHHHHHHHh
Confidence            566777777788888887766542      2223456666666554                    49999999999999


Q ss_pred             HHhCCCC------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 029199           77 VEENPGN------PLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPG------DGEILSQYAKLVWELHNDQDRAATYYE  144 (197)
Q Consensus        77 l~~~P~~------~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~------~~~~~~~lg~~l~~~~~~~~~A~~~~~  144 (197)
                      +++.++.      ..++.++|.++....|++++|+.+|++++++.+.      ...++.++|.++..+|+ +++|+++|+
T Consensus       104 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~-y~~A~~~~~  182 (290)
T d1qqea_         104 IQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQ-YIEASDIYS  182 (290)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHH
T ss_pred             hHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcCh-HHHHHHHHH
Confidence            9987666      6678889977766569999999999999988542      24568999999999885 999999999


Q ss_pred             HHHHhCCCCH-------HHHHHHHHHHHHcCCccccccCCCcc
Q 029199          145 RAVHASPEDS-------HVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       145 ~al~~~p~~~-------~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      +++...|.++       ..+.+.+.++...|+++.|...+++.
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~  225 (290)
T d1qqea_         183 KLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEG  225 (290)
T ss_dssp             HHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGG
T ss_pred             HHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            9999988765       45678899999999999998877775

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=2.9e-12  Score=84.82  Aligned_cols=69  Identities=16%  Similarity=0.157  Sum_probs=62.0

Q ss_pred             CCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 029199           63 GGDSQGVEEYYKKMVEENPGN-------PLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWEL  132 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~P~~-------~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~  132 (197)
                      .|++++|+..|++|+++.|.+       ..++.++|.+++. .|++++|+.+|+++|+++|+++.++.|++.+...+
T Consensus        18 ~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~-~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~~~~~~l   93 (95)
T d1tjca_          18 EADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQ-QGDLDKALLLTKKLLELDPEHQRANGNLKYFEYIM   93 (95)
T ss_dssp             TTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHh-cCChHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence            599999999999999987654       6789999988887 99999999999999999999999999998765543

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.24  E-value=6e-12  Score=99.67  Aligned_cols=154  Identities=10%  Similarity=0.048  Sum_probs=128.3

Q ss_pred             hhHHHHHHHHhhhcCcccccCCCChh-hHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCH
Q 029199            6 LSEEVKVMEALWNAGFEQERGTVGQE-MYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNP   84 (197)
Q Consensus         6 ~~~~~~~~~a~~~~~~~~~~~p~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~   84 (197)
                      +...+++.+|...|..+++..|.+.. +|...+-.+..                    .|+++.|.+.|+++++..|.+.
T Consensus       109 ~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~--------------------~~~~~~ar~i~~~al~~~~~~~  168 (308)
T d2onda1         109 EESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARR--------------------AEGIKSGRMIFKKAREDARTRH  168 (308)
T ss_dssp             HHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHH--------------------HHCHHHHHHHHHHHHTSTTCCT
T ss_pred             HHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH--------------------cCChHHHHHHHHHHHHhCCCcH
Confidence            34456778888888888888887754 56666555444                    3889999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHH
Q 029199           85 LFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDS----HVHASY  160 (197)
Q Consensus        85 ~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~l  160 (197)
                      ..|..++.+.+...|+.+.|..+|++++..+|+++.+|..++.++...| ++++|...|+++++..|.++    .+|..+
T Consensus       169 ~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g-~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~  247 (308)
T d2onda1         169 HVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLN-EDNNTRVLFERVLTSGSLPPEKSGEIWARF  247 (308)
T ss_dssp             HHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHSSSSCGGGCHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence            9999999666665789999999999999999999999999999999977 59999999999999887654    478888


Q ss_pred             HHHHHHcCCccccccCCCcc
Q 029199          161 AGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       161 a~~~~~~g~~~ea~~~~~~~  180 (197)
                      ...-...|+.+.+.+.++++
T Consensus       248 ~~fE~~~G~~~~~~~~~~r~  267 (308)
T d2onda1         248 LAFESNIGDLASILKVEKRR  267 (308)
T ss_dssp             HHHHHHHSCHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHH
Confidence            88888889988876666653

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.23  E-value=3.1e-12  Score=91.93  Aligned_cols=94  Identities=15%  Similarity=-0.066  Sum_probs=79.6

Q ss_pred             HHHHHH--HHHHHHhcCCHHHHHHHHHHHHHhCCCCH------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 029199           85 LFLSNY--AQFLYQSKQDLPKAEEYYSRAILADPGDG------------EILSQYAKLVWELHNDQDRAATYYERAVHAS  150 (197)
Q Consensus        85 ~~~~~l--a~~l~~~~g~~~~A~~~~~~al~l~P~~~------------~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~  150 (197)
                      .++..+  |...+. .|++++|+..|+++++++|+.+            .++.++|.+|..+|+ +++|+..+++++++.
T Consensus         8 ~a~~~l~~g~~~~~-~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~-~~~A~~~~~~al~~~   85 (156)
T d2hr2a1           8 GAYLALSDAQRQLV-AGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRS-FDEALHSADKALHYF   85 (156)
T ss_dssp             HHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCc-cchhhHhhhhhhhcc
Confidence            344444  767776 8999999999999999998754            578999999999995 999999999999875


Q ss_pred             CC-----------CHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          151 PE-----------DSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       151 p~-----------~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      |.           ...+++++|.++..+|++++|+..|++.
T Consensus        86 ~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~A  126 (156)
T d2hr2a1          86 NRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKV  126 (156)
T ss_dssp             HHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence            42           2346899999999999999999998884

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=99.23  E-value=2.1e-12  Score=101.04  Aligned_cols=118  Identities=16%  Similarity=0.106  Sum_probs=101.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 029199           61 GSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAA  140 (197)
Q Consensus        61 ~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~  140 (197)
                      ...|++++|++.|+++++.+|+++.++.+|+.++.. .|++++|+..|+++++++|++..++..++.++...+. .+++.
T Consensus         7 L~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~-~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~-~~~a~   84 (264)
T d1zbpa1           7 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCI-DGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQA-RKDFA   84 (264)
T ss_dssp             TTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHH-HHHHT
T ss_pred             HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccc-cHHHH
Confidence            346999999999999999999999999999988887 9999999999999999999999999999998877664 66666


Q ss_pred             HHHHHHHH-hCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          141 TYYERAVH-ASPEDSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       141 ~~~~~al~-~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      ..+.+... .+|++...+...+.++...|+.++|...++++
T Consensus        85 ~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a  125 (264)
T d1zbpa1          85 QGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQI  125 (264)
T ss_dssp             TSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            65555433 35666777888899999999999998777664

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=1.4e-12  Score=110.39  Aligned_cols=113  Identities=9%  Similarity=-0.031  Sum_probs=73.6

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 029199           64 GDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYY  143 (197)
Q Consensus        64 g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~  143 (197)
                      +.|+.|+..|+++++++|++...+.++|..+.. .++.++|+..+++++..+|.  .++.++|.++...+ ++++|+.+|
T Consensus       100 ~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~-~~~~~~A~~~~~~al~~~~~--~~~~~LG~l~~~~~-~~~~A~~~y  175 (497)
T d1ya0a1         100 GFYTQLLQELCTVFNVDLPCRVKSSQLGIISNK-QTHTSAIVKPQSSSCSYICQ--HCLVHLGDIARYRN-QTSQAESYY  175 (497)
T ss_dssp             HHHHHHHHHHTC--------------------------------CCHHHHHHHH--HHHHHHHHHHHHTT-CHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHh-CCCHHHHHHHHHHHhCCCHH--HHHHHHHHHHHHcc-cHHHHHHHH
Confidence            566777777777888999999999999977776 99999999999999998874  67889999999977 599999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          144 ERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       144 ~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      ++|++++|+++.+|+++|.++...|+..+|+..|.+.
T Consensus       176 ~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ra  212 (497)
T d1ya0a1         176 RHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRS  212 (497)
T ss_dssp             HHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            9999999999999999999999999999999888874

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.20  E-value=8.6e-12  Score=98.00  Aligned_cols=117  Identities=11%  Similarity=-0.004  Sum_probs=97.6

Q ss_pred             CCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHH
Q 029199           63 GGDSQGVEEYYKKMVEEN------PGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGD------GEILSQYAKLVW  130 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~------P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~------~~~~~~lg~~l~  130 (197)
                      .|++++|+++|++++.+.      +.....+.++|.++.. +|++++|+.+|++++++.+.+      ..++.++|.++.
T Consensus        50 ~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~  128 (290)
T d1qqea_          50 RKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKS-GGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILE  128 (290)
T ss_dssp             TTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH-hCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHh
Confidence            489999999999999973      3335688999988777 999999999999999987665      677888898876


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          131 ELHNDQDRAATYYERAVHASPE------DSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       131 ~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      ...+++++|+++|++++++.+.      ...++.++|.++..+|++++|...|+++
T Consensus       129 ~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~  184 (290)
T d1qqea_         129 NDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKL  184 (290)
T ss_dssp             HTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHH
Confidence            6433699999999999987432      2456899999999999999999888775

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.06  E-value=3.5e-10  Score=83.15  Aligned_cols=59  Identities=8%  Similarity=0.003  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCc
Q 029199          120 EILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSE  179 (197)
Q Consensus       120 ~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~  179 (197)
                      .++.+++.++...|+ +++|+.+++++++.+|.+..+|..++.++..+|+..+|...|++
T Consensus        68 ~a~~~la~~~~~~g~-~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~  126 (179)
T d2ff4a2          68 LAHTAKAEAEIACGR-ASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRR  126 (179)
T ss_dssp             HHHHHHHHHHHHTTC-HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCC-chHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            344555555555443 55555555555555555555555555555555555555555554

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.06  E-value=6.2e-10  Score=81.80  Aligned_cols=91  Identities=13%  Similarity=0.082  Sum_probs=79.7

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCH----------------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 029199           63 GGDSQGVEEYYKKMVEENPGNP----------------------LFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGE  120 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~P~~~----------------------~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~  120 (197)
                      .|++++|++.|.+++.+.|.+.                      .++.+++.++.. .|++++|+.+++++++++|.+..
T Consensus        24 ~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~-~g~~~~Al~~~~~al~~~P~~e~  102 (179)
T d2ff4a2          24 AGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIA-CGRASAVIAELEALTFEHPYREP  102 (179)
T ss_dssp             TTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHSTTCHH
T ss_pred             CCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCccHH
Confidence            4999999999999999876542                      578889988887 99999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHH-------HHhCCCCHHH
Q 029199          121 ILSQYAKLVWELHNDQDRAATYYERA-------VHASPEDSHV  156 (197)
Q Consensus       121 ~~~~lg~~l~~~~~~~~~A~~~~~~a-------l~~~p~~~~~  156 (197)
                      +|.+++.++...|+ +++|++.|+++       +-++|. +..
T Consensus       103 ~~~~l~~al~~~Gr-~~eAl~~y~~~~~~L~~eLG~~P~-~~l  143 (179)
T d2ff4a2         103 LWTQLITAYYLSDR-QSDALGAYRRVKTTLADDLGIDPG-PTL  143 (179)
T ss_dssp             HHHHHHHHHHTTTC-HHHHHHHHHHHHHHHHHHHSCCCC-HHH
T ss_pred             HHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHhCCCcC-HHH
Confidence            99999999999886 99999999998       446675 444

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.96  E-value=1.3e-09  Score=84.78  Aligned_cols=116  Identities=16%  Similarity=0.104  Sum_probs=96.9

Q ss_pred             CCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH
Q 029199           63 GGDSQGVEEYYKKMVEENPGN-----PLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGD------GEILSQYAKLVWE  131 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~P~~-----~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~------~~~~~~lg~~l~~  131 (197)
                      .|++++|++.|+++++..|++     ..++..+|.+++. .|++++|+..|++++++.|..      ..++.+++.++..
T Consensus        25 ~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (366)
T d1hz4a_          25 DGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHC-KGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFA  103 (366)
T ss_dssp             TTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence            499999999999999999987     3578889988887 999999999999999876533      3567888899999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199          132 LHNDQDRAATYYERAVHASPE--------DSHVHASYAGFLWETEEDNDECDAPSEL  180 (197)
Q Consensus       132 ~~~~~~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~g~~~ea~~~~~~~  180 (197)
                      .+ ++.+|...+.+++.+.+.        ....+..+|.++...|+++++...++..
T Consensus       104 ~~-~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~  159 (366)
T d1hz4a_         104 QG-FLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSG  159 (366)
T ss_dssp             TT-CHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HH-HHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHH
Confidence            77 499999999999876421        2346788999999999999987776654

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.90  E-value=2.8e-09  Score=82.91  Aligned_cols=81  Identities=19%  Similarity=0.198  Sum_probs=75.5

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCC
Q 029199           98 KQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAP  177 (197)
Q Consensus        98 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~  177 (197)
                      .|++++|+..|+++++.+|+|+.++.++|.+|+..|+ +++|+..|+++++++|++..++..++.++...+..+++...+
T Consensus         9 ~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~-~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~~~~   87 (264)
T d1zbpa1           9 EGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGD-FERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGA   87 (264)
T ss_dssp             TTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHHHHh
Confidence            7999999999999999999999999999999999885 999999999999999999999999999999888888876665


Q ss_pred             Cc
Q 029199          178 SE  179 (197)
Q Consensus       178 ~~  179 (197)
                      .+
T Consensus        88 ~~   89 (264)
T d1zbpa1          88 AT   89 (264)
T ss_dssp             CC
T ss_pred             hh
Confidence            55

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.79  E-value=8.8e-09  Score=79.81  Aligned_cols=111  Identities=13%  Similarity=0.055  Sum_probs=89.4

Q ss_pred             CCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHH
Q 029199           63 GGDSQGVEEYYKKMVEENPGN----PLFLSNYAQFLYQSKQDLPKAEEYYSRAILA------DPGDGEILSQYAKLVWEL  132 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~P~~----~~~~~~la~~l~~~~g~~~~A~~~~~~al~l------~P~~~~~~~~lg~~l~~~  132 (197)
                      .|++++|...++++++..|.+    ...+.++|.++.. .|++++|+..+++++..      .|..+.++..+|.++...
T Consensus       226 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~  304 (366)
T d1hz4a_         226 TGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQIL-LGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQA  304 (366)
T ss_dssp             TTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHC
Confidence            489999999999999987765    4567788977777 99999999999999854      466778999999999998


Q ss_pred             cCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCCcccccc
Q 029199          133 HNDQDRAATYYERAVHASPE---------DSHVHASYAGFLWETEEDNDECD  175 (197)
Q Consensus       133 ~~~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~ea~~  175 (197)
                      |+ +++|+++|++++++.+.         ....+..+...+...++.+++..
T Consensus       305 g~-~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~  355 (366)
T d1hz4a_         305 GR-KSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQ  355 (366)
T ss_dssp             TC-HHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHH
T ss_pred             CC-HHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Confidence            85 99999999999987542         23445556666777787777643

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.79  E-value=6.9e-08  Score=66.07  Aligned_cols=96  Identities=13%  Similarity=-0.030  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHcCCHHHHHHHH
Q 029199           68 GVEEYYKKMVEENPGNPLFLSNYAQFLYQSK---QDLPKAEEYYSRAILADPGDG-EILSQYAKLVWELHNDQDRAATYY  143 (197)
Q Consensus        68 ~A~~~~~~al~~~P~~~~~~~~la~~l~~~~---g~~~~A~~~~~~al~l~P~~~-~~~~~lg~~l~~~~~~~~~A~~~~  143 (197)
                      .-.+-|.+-..-.|. ....+++|.++.. .   .+.++++.+++.+++.+|.+. +.++++|..++++| ++++|+.++
T Consensus        20 ~~~~q~~~e~~~~~s-~qt~F~YAw~Lv~-S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklg-dy~~A~~~~   96 (124)
T d2pqrb1          20 ILRQQVVSEGGPTAT-IQSRFNYAWGLIK-STDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLG-EYSMAKRYV   96 (124)
T ss_dssp             HHHHHHHHTTGGGSC-HHHHHHHHHHHHH-SSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHT-CHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCC-cchHHHHHHHHHc-CCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHh-hHHHHHHHH
Confidence            333444443333343 7788999977775 4   356799999999999999775 89999999999999 599999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHH
Q 029199          144 ERAVHASPEDSHVHASYAGFLWE  166 (197)
Q Consensus       144 ~~al~~~p~~~~~~~~la~~~~~  166 (197)
                      +++|+++|+|..+..-.-.|-.+
T Consensus        97 ~~~L~ieP~n~qA~~L~~~Ie~~  119 (124)
T d2pqrb1          97 DTLFEHERNNKQVGALKSMVEDK  119 (124)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHccCCCcHHHHHHHHHHHHH
Confidence            99999999999998776666544

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.54  E-value=2.8e-07  Score=63.63  Aligned_cols=107  Identities=18%  Similarity=0.178  Sum_probs=84.8

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---HcCCHHHHH
Q 029199           64 GDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWE---LHNDQDRAA  140 (197)
Q Consensus        64 g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~---~~~~~~~A~  140 (197)
                      .|+++|+++|+++.+..  ++.+.++|+.   ....+.++|+.+|+++.+.  +++.+.+++|.+|..   ...|+++|+
T Consensus         7 kd~~~A~~~~~kaa~~g--~~~a~~~l~~---~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~   79 (133)
T d1klxa_           7 KDLKKAIQYYVKACELN--EMFGCLSLVS---NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA   79 (133)
T ss_dssp             HHHHHHHHHHHHHHHTT--CTTHHHHHHT---CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             cCHHHHHHHHHHHHHCC--Chhhhhhhcc---ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHH
Confidence            58899999999998875  6667777773   2357899999999999864  689999999988765   123689999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHH----cCCccccccCCCc
Q 029199          141 TYYERAVHASPEDSHVHASYAGFLWE----TEEDNDECDAPSE  179 (197)
Q Consensus       141 ~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~ea~~~~~~  179 (197)
                      ++|+++.+.  .++.+.+++|.+|..    ..+..+|...|++
T Consensus        80 ~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~  120 (133)
T d1klxa_          80 QYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEK  120 (133)
T ss_dssp             HHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred             HHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHH
Confidence            999999875  578999999999987    2456666666665

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.47  E-value=2.6e-07  Score=63.09  Aligned_cols=86  Identities=8%  Similarity=-0.005  Sum_probs=70.6

Q ss_pred             CChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhcCCHHHHHH
Q 029199           28 VGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNP-LFLSNYAQFLYQSKQDLPKAEE  106 (197)
Q Consensus        28 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~-~~~~~la~~l~~~~g~~~~A~~  106 (197)
                      .+++..|..++++....                 ...+..+++..++++++.+|.+. +.+++||..+++ +|++++|+.
T Consensus        33 ~s~qt~F~YAw~Lv~S~-----------------~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyk-lgdy~~A~~   94 (124)
T d2pqrb1          33 ATIQSRFNYAWGLIKST-----------------DVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYK-LGEYSMAKR   94 (124)
T ss_dssp             SCHHHHHHHHHHHHHSS-----------------CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH-HTCHHHHHH
T ss_pred             CCcchHHHHHHHHHcCC-----------------cHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH-HhhHHHHHH
Confidence            45677888888875421                 13678899999999999999875 799999988887 999999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHH
Q 029199          107 YYSRAILADPGDGEILSQYAKLVWE  131 (197)
Q Consensus       107 ~~~~al~l~P~~~~~~~~lg~~l~~  131 (197)
                      +++++|+++|+|..+....-.+.-.
T Consensus        95 ~~~~~L~ieP~n~qA~~L~~~Ie~~  119 (124)
T d2pqrb1          95 YVDTLFEHERNNKQVGALKSMVEDK  119 (124)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHccCCCcHHHHHHHHHHHHH
Confidence            9999999999999998776655433

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.39  E-value=2.6e-06  Score=64.47  Aligned_cols=112  Identities=14%  Similarity=0.119  Sum_probs=88.1

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---HcCCH
Q 029199           63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQ---SKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWE---LHNDQ  136 (197)
Q Consensus        63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~---~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~---~~~~~  136 (197)
                      ......+...+.+...  +.+...+++||.++..   ...+...+..+++++.+  +.++.+++++|.++..   ..+++
T Consensus       123 ~~~~~~a~~~~~~~~~--~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~~~d~  198 (265)
T d1ouva_         123 TRDFKKAVEYFTKACD--LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACD--LKDSPGCFNAGNMYHHGEGATKNF  198 (265)
T ss_dssp             CCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCCCH
T ss_pred             cchhHHHHHHhhhhhc--ccccchhhhhhhhhccCCCcccccccchhhhhcccc--ccccccccchhhhcccCcccccch
Confidence            3677788888877655  5678888999977665   23577888888888874  6789999999988876   12369


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCccccccCCCcc
Q 029199          137 DRAATYYERAVHASPEDSHVHASYAGFLWE----TEEDNDECDAPSEL  180 (197)
Q Consensus       137 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~ea~~~~~~~  180 (197)
                      ++|+.+|+++.+.  .++.+++++|.++..    ..++++|.+.|++.
T Consensus       199 ~~A~~~~~~aa~~--g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kA  244 (265)
T d1ouva_         199 KEALARYSKACEL--ENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKG  244 (265)
T ss_dssp             HHHHHHHHHHHHT--TCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHH
T ss_pred             hhhhhhHhhhhcc--cCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHH
Confidence            9999999999887  479999999999986    33677788887764

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.37  E-value=7.3e-06  Score=56.15  Aligned_cols=115  Identities=18%  Similarity=0.100  Sum_probs=87.3

Q ss_pred             HHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 029199            9 EVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLS   88 (197)
Q Consensus         9 ~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~   88 (197)
                      ...+.+|+..|.++.+.  +++...+..|-..                      ..+.++|++.|+++.+.  +++.+.+
T Consensus         6 ~kd~~~A~~~~~kaa~~--g~~~a~~~l~~~~----------------------~~~~~~a~~~~~~aa~~--g~~~a~~   59 (133)
T d1klxa_           6 KKDLKKAIQYYVKACEL--NEMFGCLSLVSNS----------------------QINKQKLFQYLSKACEL--NSGNGCR   59 (133)
T ss_dssp             HHHHHHHHHHHHHHHHT--TCTTHHHHHHTCT----------------------TSCHHHHHHHHHHHHHT--TCHHHHH
T ss_pred             ccCHHHHHHHHHHHHHC--CChhhhhhhcccc----------------------ccCHHHHHHHHhhhhcc--cchhhhh
Confidence            45677888888886655  3444444443211                      36889999999999875  6899999


Q ss_pred             HHHHHHHHh---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCC
Q 029199           89 NYAQFLYQS---KQDLPKAEEYYSRAILADPGDGEILSQYAKLVWE---LHNDQDRAATYYERAVHASP  151 (197)
Q Consensus        89 ~la~~l~~~---~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~---~~~~~~~A~~~~~~al~~~p  151 (197)
                      .||.++..-   ..++.+|+.+|+++.+.  .++.+.+++|.+|..   ..+|.++|+.+|++|.+...
T Consensus        60 ~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~  126 (133)
T d1klxa_          60 FLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  126 (133)
T ss_dssp             HHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             hHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence            999655531   23789999999999875  589999999998877   23479999999999988753

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.25  E-value=8.5e-06  Score=61.53  Aligned_cols=100  Identities=19%  Similarity=0.263  Sum_probs=68.7

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---cCC
Q 029199           62 SGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQ---SKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWEL---HND  135 (197)
Q Consensus        62 ~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~---~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~---~~~  135 (197)
                      ..+++++|+++|+++.+.  ++..++++||.++..   ...++.+|..+++++...  .++.+..++|.++...   ..+
T Consensus        14 ~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~--~~~~a~~~l~~~~~~~~~~~~~   89 (265)
T d1ouva_          14 KEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--NYSNGCHLLGNLYYSGQGVSQN   89 (265)
T ss_dssp             HTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCC
T ss_pred             HCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc--cccchhhccccccccccccchh
Confidence            357888888888888664  577888888865554   134778888888887643  4777778887766541   224


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 029199          136 QDRAATYYERAVHASPEDSHVHASYAGFLWET  167 (197)
Q Consensus       136 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  167 (197)
                      .++|..+++++....  .+.+...++..+...
T Consensus        90 ~~~a~~~~~~a~~~g--~~~a~~~l~~~~~~~  119 (265)
T d1ouva_          90 TNKALQYYSKACDLK--YAEGCASLGGIYHDG  119 (265)
T ss_dssp             HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHhhhhhhh--hhhHHHhhcccccCC
Confidence            677888888887654  456667777766653

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=91.81  E-value=0.65  Score=36.72  Aligned_cols=127  Identities=12%  Similarity=0.066  Sum_probs=84.2

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 029199           64 GDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQS---KQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAA  140 (197)
Q Consensus        64 g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~---~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~  140 (197)
                      .+.+.|...+.......+-....+......+...   .+..+.+...+........+........+..+.. + ++..+.
T Consensus       228 ~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~~al~~-~-~~~~~~  305 (450)
T d1qsaa1         228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMALGT-G-DRRGLN  305 (450)
T ss_dssp             HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHH-T-CHHHHH
T ss_pred             cChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHHHHHHHHHc-C-ChHHHH
Confidence            5777888888887777666666554444333321   3556778888877776555555556666665544 6 588888


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcccccccchhhhhhhh
Q 029199          141 TYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSELDSNTLQIGHAAVAS  194 (197)
Q Consensus       141 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~~~~~~~~~~~~~~~  194 (197)
                      ..+..........+...|.+|..+..+|+.++|...|..+...  .++.+-+|+
T Consensus       306 ~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~--~~fYG~LAa  357 (450)
T d1qsaa1         306 TWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ--RGFYPMVAA  357 (450)
T ss_dssp             HHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSHHHHHHH
T ss_pred             HHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC--CChHHHHHH
Confidence            8777654333445788899999999999999988888776321  245555543

>d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: zeta isoform
species: Cow (Bos taurus) [TaxId: 9913]

Probab=81.05  E-value=2.9  Score=30.10  Aligned_cols=26  Identities=15%  Similarity=0.342  Sum_probs=12.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 029199          122 LSQYAKLVWELHNDQDRAATYYERAV  147 (197)
Q Consensus       122 ~~~lg~~l~~~~~~~~~A~~~~~~al  147 (197)
                      ..|++++++..-++.++|.+..++|+
T Consensus       171 ~LN~SVF~YEi~~~~~~A~~lak~af  196 (230)
T d2o02a1         171 ALNFSVFYYEILNSPEKACSLAKTAF  196 (230)
T ss_dssp             HHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34444455544444445444444443