Citrus Sinensis ID: 029220

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------
Protein Sequence
MASTRILSPTAAAAVGITHKSIYLFSKPPSPSSFPTFTVTHNRPITKLNVSSPPNETPITTSTSTTTTNKETVFFDGGAHYGDLLANLLLGFTLFWLPLTLAAVSRAFNLRYRFTNLRVTVISGWTGEDRSDFSYKVIKDVQVVPRFIGDWGDIIITLKDGTKVDLRSVPKFREIAKYCVSMAEQPVVFKETGPKGF
Secondary Structure (PSIPRED)
ccccccccccccccEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEcEEEEEEEccccccccccccccEEEEEEEcccccccccEEEEEccccEEEEEccccHHHHHHHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccHEEEEEcccEEEEEcccccccccccccccccccccccEcccccccccccccccccccccEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEccccEEEEEccccccccccEEEHHEEEEEEccccccccccEEEEEccccEEEEcccccHHHHHHHHHHHHcccccccccccccc
Coil and Loop (DISEMBL)
mastrilsptaaAAVGITHKSiylfskppspssfptftvthnrpitklnvssppnetpittststtttnketvffdggahYGDLLANLLLGFTLFWLPLTLAAVSRAFNLRYRFTNLRVTVisgwtgedrsdfsykvikdvqvvprfigdwGDIIItlkdgtkvdlrsvpKFREIAKYCVSmaeqpvvfketgpkgf
Flexible Loop (DISEMBL)
mastrilsptaaAAVGITHKSIYLFSKPPSPSSFPTFTVTHNRPitklnvssppnetpittststtttnKETVFFDGGAHYGDLLANLLLGFTLFWLPLTLAAVSRAFNLRYRFTNLRVTvisgwtgedrsdfsykvikdvqvvprfigdwgdiiitlkdgtkvdlrsvPKFREIAKYCVsmaeqpvvfketgpkgf
Low Complexity Region (SEG)
MASTRILSPTAAAAVGITHKSIYLfskppspssfptftvtHNRPITKLNVssppnetpittststtttnketVFFDGGAHYGDllanlllgftlfwlpltlAAVSRAFNLRYRFTNLRVTVISGWTGEDRSDFSYKVIKDVQVVPRFIGDWGDIIITLKDGTKVDLRSVPKFREIAKYCVSMAEQPVVFKETGPKGF
Disordered region (IsUnstruct)
***********AAAVGITHKSIYLF*********************************************ETVFFDGGAHYGDLLANLLLGFTLFWLPLTLAAVSRAFNLRYRFTNLRVTVISGWTGEDRSDFSYKVIKDVQVVPRFIGDWGDIIITLKDGTKVDLRSVPKFREIAKYCVSMAEQPVVF********
Disordered Region (DISOPRED)
*********TAAAAVGITHK****************************************************VFFDGGAHYGDLLANLLLGFTLFWLPLTLAAVSRAFNLRYRFTNLRVTVISGWTGEDRSDFSYKVIKDVQVVPRFIGDWGDIIITLKDGTKVDLRSVPKFREIAKYC******************
Disordered Region (DISEMBL)
********PTAAAAVGITHKSIYLFSKPPSPSSFPTFTVTHNRPITKLNVSSPPNETPITTSTSTTTTNKETVFFDGGAHYGDLLANLLLGFTLFWLPLTLAAVSRAFNLRYRFTNLRVTVISGWTGEDRSDFSYKVIKDVQVVPRFIGDWGDIIITLKDGTKVDLRSVPKFREIAKYCVSMAEQPVVFKETGPKGF
Disordered Region (DISPRO)
*****ILSPTAAAAVGITHKSIYLFSKP***************************************TNKETVFFDGGAHYGDLLANLLLGFTLFWLPLTLAAVSRAFNLRYRFTNLRVTVISGWTGEDRSDFSYKVIKDVQVVPRFIGDWGDIIITLKDGTKVDLRSVPKFREIAKYCVSMAEQ************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASTRILSPTAAAAVGITHKSIYLFSKPPSPSSFPTFTVTHNRPITKLNVSSPPNETPITTSTSTTTTNKETVFFDGGAHYGDLLANLLLGFTLFWLPLTLAAVSRAFNLRYRFTNLRVTVISGWTGEDRSDFSYKVIKDVQVVPRFIGDWGDIIITLKDGTKVDLRSVPKFREIAKYCVSMAEQPVVFKETGPKGF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	197
224111262	199	predicted protein [Populus trichocarpa]	0.969	0.959	0.707	1e-65
255558170	200	conserved hypothetical protein [Ricinus	0.974	0.96	0.731	2e-65
297844338	431	hypothetical protein ARALYDRAFT_312432 [	0.954	0.436	0.684	6e-65
7262676	431	Contains similarity to Vip1 protein from	0.654	0.299	0.883	3e-64
18394104	196	NAD(P)-linked oxidoreductase-like protei	0.700	0.704	0.833	1e-63
225425756	201	PREDICTED: uncharacterized protein LOC10	0.934	0.915	0.700	4e-61
357486707	199	Putativ eribonuclease P [Medicago trunca	0.949	0.939	0.650	6e-61
147815864	201	hypothetical protein VITISV_020543 [Viti	0.934	0.915	0.695	1e-60
356500423	191	PREDICTED: uncharacterized protein LOC10	0.781	0.806	0.764	3e-59
56407685	186	hypothetical protein 9 [Ipomoea batatas]	0.913	0.967	0.688	2e-57

>gi|224111262|ref|XP_002315796.1| predicted protein [Populus trichocarpa] gi|222864836|gb|EEF01967.1| predicted protein [Populus trichocarpa]

 Score =  254 bits (650), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 145/205 (70%), Positives = 165/205 (80%), Gaps = 14/205 (6%)

Query: 1   MASTRILSPTAAAAVG------ITHKSIYLFSKPPSPSSFPTFTVTHNRPITKLNVSSPP 54
           MAS  +LSP+  AA        +TH+ ++L SK P    F TF   ++R ITKLNVSSP 
Sbjct: 1   MASVPLLSPSTTAAASCRTSSSLTHQLLHLSSKVP----FHTFPARNHRLITKLNVSSPT 56

Query: 55  NETPITTSTSTTTTNKETVFFDGGAHYGDLLANLLLGFTLFWLPLTLAAVSRAFNLRYRF 114
           N+    TST++    +E +FFDGGAHYGDLLANLLLGFTL WLPLTLAAVSRAF LRYRF
Sbjct: 57  NKP--ATSTTSKKPIEEIIFFDGGAHYGDLLANLLLGFTLLWLPLTLAAVSRAFYLRYRF 114

Query: 115 TNLRVTVISGWTGEDRSDFSYKVIKDVQVVPRFIGDWGDIIITLKDGTKVDLRSVPKFRE 174
           TNLRVTVISG TG+DRSDFSYKVIKDVQVVPRFIG+WGD++ITLKDGTKVDLRSVPKFRE
Sbjct: 115 TNLRVTVISGLTGQDRSDFSYKVIKDVQVVPRFIGEWGDVVITLKDGTKVDLRSVPKFRE 174

Query: 175 IAKYCVSMAEQPVVFKE--TGPKGF 197
           IAKYC+SMAE+PVV KE  TGP+GF
Sbjct: 175 IAKYCLSMAEKPVVMKEDSTGPRGF 199

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255558170|ref|XP_002520112.1| conserved hypothetical protein [Ricinus communis] gi|223540604|gb|EEF42167.1| conserved hypothetical protein [Ricinus communis]

 Score =  254 bits (648), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 150/205 (73%), Positives = 173/205 (84%), Gaps = 13/205 (6%)

Query: 1   MASTRILSPT------AAAAVGITHKSIYLFSKPPSPSSFPTFTVTHNRPITKLNVSSPP 54
           MAS+++ SPT      A A   ITH+S++L S  P    FP F   + RPITKL+VSSP 
Sbjct: 1   MASSQLFSPTITPKTTATAISTITHQSLFLSSNLP----FPVFHSKNQRPITKLHVSSPT 56

Query: 55  NETPITTSTSTTTT--NKETVFFDGGAHYGDLLANLLLGFTLFWLPLTLAAVSRAFNLRY 112
           N+ PITTST++++   N+ET+FFDGGAHYGDL+ANLLLGFTL WLPLTLAAVSRAF LRY
Sbjct: 57  NK-PITTSTTSSSKKPNEETIFFDGGAHYGDLVANLLLGFTLLWLPLTLAAVSRAFFLRY 115

Query: 113 RFTNLRVTVISGWTGEDRSDFSYKVIKDVQVVPRFIGDWGDIIITLKDGTKVDLRSVPKF 172
           RFTNLRVTVISG+TG+DRSDFSYKVIKDVQVVPRFIG+WGDI+ITLKDGTKVDLRSVPKF
Sbjct: 116 RFTNLRVTVISGFTGQDRSDFSYKVIKDVQVVPRFIGEWGDIVITLKDGTKVDLRSVPKF 175

Query: 173 REIAKYCVSMAEQPVVFKETGPKGF 197
           REIAKYC++MAE+PVV KE GPKGF
Sbjct: 176 REIAKYCLAMAEKPVVLKENGPKGF 200

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297844338|ref|XP_002890050.1| hypothetical protein ARALYDRAFT_312432 [Arabidopsis lyrata subsp. lyrata] gi|297335892|gb|EFH66309.1| hypothetical protein ARALYDRAFT_312432 [Arabidopsis lyrata subsp. lyrata]

 Score =  252 bits (643), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 130/190 (68%), Positives = 148/190 (77%), Gaps = 2/190 (1%)

Query: 9   PTAAAAVGITHKSIYLFSKPPSPSSF-PTFTVTHNRPITKLNVSSPPNETPITTSTSTTT 67
           P + AA  +  KS  L +    P+S  P  T +  R I +L ++S    +  T  + +  
Sbjct: 243 PPSTAATSVVRKSHLLSATFSFPASLLPPSTKSPQRHIQRLLLASSSA-SASTVPSDSKP 301

Query: 68  TNKETVFFDGGAHYGDLLANLLLGFTLFWLPLTLAAVSRAFNLRYRFTNLRVTVISGWTG 127
             KETV+FDGGAHYGDLLANL+LG T+ WLPLTLAAVSRAFNLRYRFTNLRVTVISG TG
Sbjct: 302 AKKETVYFDGGAHYGDLLANLILGLTILWLPLTLAAVSRAFNLRYRFTNLRVTVISGLTG 361

Query: 128 EDRSDFSYKVIKDVQVVPRFIGDWGDIIITLKDGTKVDLRSVPKFREIAKYCVSMAEQPV 187
           EDRSDFSYKVIKDVQVVPRFIG+WGDIIITLKDGTKVDLRSVPKFREIAKYC+SMA+QP 
Sbjct: 362 EDRSDFSYKVIKDVQVVPRFIGEWGDIIITLKDGTKVDLRSVPKFREIAKYCLSMADQPA 421

Query: 188 VFKETGPKGF 197
           V KE+G KGF
Sbjct: 422 VLKESGAKGF 431

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7262676|gb|AAF43934.1|AC012188_11 Contains similarity to Vip1 protein from Schizosaccharomyces pombe gb|Y13635.1 and contains a RNA recognition motif PF|00076. EST gb|AI996906 comes from this gene [Arabidopsis thaliana]

 Score =  250 bits (638), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 114/129 (88%), Positives = 122/129 (94%)

Query: 69  NKETVFFDGGAHYGDLLANLLLGFTLFWLPLTLAAVSRAFNLRYRFTNLRVTVISGWTGE 128
            KETV+FDGGAHYGDLLANL+LG T+ WLPLTLAAVSRAFNLRYRFTNLRVTVISG TG+
Sbjct: 303 KKETVYFDGGAHYGDLLANLILGLTILWLPLTLAAVSRAFNLRYRFTNLRVTVISGLTGD 362

Query: 129 DRSDFSYKVIKDVQVVPRFIGDWGDIIITLKDGTKVDLRSVPKFREIAKYCVSMAEQPVV 188
           DRSDFSYKVIKDVQVVPRFIG+WGDIIITLKDGTKVDLRSVPKFREIAKYC+SMA+QP V
Sbjct: 363 DRSDFSYKVIKDVQVVPRFIGEWGDIIITLKDGTKVDLRSVPKFREIAKYCLSMADQPAV 422

Query: 189 FKETGPKGF 197
            KE+G KGF
Sbjct: 423 LKESGAKGF 431

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18394104|ref|NP_563947.1| NAD(P)-linked oxidoreductase-like protein [Arabidopsis thaliana] gi|15292967|gb|AAK93594.1| unknown protein [Arabidopsis thaliana] gi|21281179|gb|AAM45014.1| unknown protein [Arabidopsis thaliana] gi|21554002|gb|AAM63083.1| unknown [Arabidopsis thaliana] gi|62318554|dbj|BAD94923.1| hypothetical protein [Arabidopsis thaliana] gi|332191028|gb|AEE29149.1| NAD(P)-linked oxidoreductase-like protein [Arabidopsis thaliana]

 Score =  247 bits (631), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 115/138 (83%), Positives = 125/138 (90%)

Query: 60  TTSTSTTTTNKETVFFDGGAHYGDLLANLLLGFTLFWLPLTLAAVSRAFNLRYRFTNLRV 119
           T  + +    KETV+FDGGAHYGDLLANL+LG T+ WLPLTLAAVSRAFNLRYRFTNLRV
Sbjct: 59  TVPSDSKPAKKETVYFDGGAHYGDLLANLILGLTILWLPLTLAAVSRAFNLRYRFTNLRV 118

Query: 120 TVISGWTGEDRSDFSYKVIKDVQVVPRFIGDWGDIIITLKDGTKVDLRSVPKFREIAKYC 179
           TVISG TG+DRSDFSYKVIKDVQVVPRFIG+WGDIIITLKDGTKVDLRSVPKFREIAKYC
Sbjct: 119 TVISGLTGDDRSDFSYKVIKDVQVVPRFIGEWGDIIITLKDGTKVDLRSVPKFREIAKYC 178

Query: 180 VSMAEQPVVFKETGPKGF 197
           +SMA+QP V KE+G KGF
Sbjct: 179 LSMADQPAVLKESGAKGF 196

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225425756|ref|XP_002277007.1| PREDICTED: uncharacterized protein LOC100263597 [Vitis vinifera]

 Score =  239 bits (610), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 138/197 (70%), Positives = 154/197 (78%), Gaps = 13/197 (6%)

Query: 6   ILSPTAAAAVGITHKSIYL-----FSKPPSPSSFPTFTVTHNRPITKLNVSSPPNETPIT 60
           ILSP   A    TH S+       F+K PS  S  T     NRP +KL+VSSP N+   T
Sbjct: 13  ILSP---ATTSTTHHSLQFSTKLSFTKLPSIPSSRT-----NRPHSKLHVSSPTNKPTAT 64

Query: 61  TSTSTTTTNKETVFFDGGAHYGDLLANLLLGFTLFWLPLTLAAVSRAFNLRYRFTNLRVT 120
           TS ST+   +ET+FFDGGAHYGDL+ANLLLGFTL WLPLTLAAVSRAF LRYRFTNLRVT
Sbjct: 65  TSKSTSKPTEETIFFDGGAHYGDLVANLLLGFTLLWLPLTLAAVSRAFFLRYRFTNLRVT 124

Query: 121 VISGWTGEDRSDFSYKVIKDVQVVPRFIGDWGDIIITLKDGTKVDLRSVPKFREIAKYCV 180
           VISG TG+DRSDFSYKVIKDVQVVPRF+G+WGDI+ITLKDGTKVDLRSVPKFREIA+YC+
Sbjct: 125 VISGLTGQDRSDFSYKVIKDVQVVPRFVGEWGDIVITLKDGTKVDLRSVPKFREIAQYCL 184

Query: 181 SMAEQPVVFKETGPKGF 197
           SMA Q  V KE+  KGF
Sbjct: 185 SMAGQSSVLKESEAKGF 201

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357486707|ref|XP_003613641.1| Putativ eribonuclease P [Medicago truncatula] gi|355514976|gb|AES96599.1| Putativ eribonuclease P [Medicago truncatula]

 Score =  239 bits (609), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 132/203 (65%), Positives = 147/203 (72%), Gaps = 16/203 (7%)

Query: 3   STRILSPTAAAAVG-ITHKSIY-LFSKPPSPSSFPTFTVTHNRPIT-KLNVSSPPNETPI 59
           ST +LSP     +  I H ++  LF   P        T TH+R +T KL VSS P   P 
Sbjct: 5   STPLLSPPTTTTISPINHHTLQPLFLTKP--------TSTHSRKLTTKLQVSSSPTNKPT 56

Query: 60  TTSTSTT----TTNKETVFFDGGAHYGDLLANLLLGFTLFWLPLTLAAVSRAFNLRYRFT 115
           T  TS        N ET+FFDGGAHYGDL+ NLLLGFTL WLPLTLAAVSRA  LRYRFT
Sbjct: 57  TPITSRQPPPQKPNAETIFFDGGAHYGDLITNLLLGFTLVWLPLTLAAVSRALYLRYRFT 116

Query: 116 NLRVTVISGWTGEDRSDFSYKVIKDVQVVPRFIGDWGDIIITLKDGTKVDLRSVPKFREI 175
           NLRV+VISG TGEDRSDFSY VIKDVQVVPRFIG+WGDI+ITLKDGTKVDLRSVPKFREI
Sbjct: 117 NLRVSVISGLTGEDRSDFSYSVIKDVQVVPRFIGEWGDIVITLKDGTKVDLRSVPKFREI 176

Query: 176 AKYCVSMAEQPVV-FKETGPKGF 197
           AKYC+SM E+      ++GPKGF
Sbjct: 177 AKYCLSMKEKNSKGLDQSGPKGF 199

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147815864|emb|CAN74870.1| hypothetical protein VITISV_020543 [Vitis vinifera]

 Score =  238 bits (606), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 137/197 (69%), Positives = 153/197 (77%), Gaps = 13/197 (6%)

Query: 6   ILSPTAAAAVGITHKSIYL-----FSKPPSPSSFPTFTVTHNRPITKLNVSSPPNETPIT 60
           ILSP   A    TH S+       F+K PS  S  T     NRP +KL+VSSP N+   T
Sbjct: 13  ILSP---ATTSTTHHSLQFSTKLSFTKLPSIPSSRT-----NRPHSKLHVSSPTNKPTAT 64

Query: 61  TSTSTTTTNKETVFFDGGAHYGDLLANLLLGFTLFWLPLTLAAVSRAFNLRYRFTNLRVT 120
           TS S +   +ET+FFDGGAHYGDL+ANLLLGFTL WLPLTLAAVSRAF LRYRFTNLRVT
Sbjct: 65  TSKSXSKPTEETIFFDGGAHYGDLVANLLLGFTLLWLPLTLAAVSRAFFLRYRFTNLRVT 124

Query: 121 VISGWTGEDRSDFSYKVIKDVQVVPRFIGDWGDIIITLKDGTKVDLRSVPKFREIAKYCV 180
           VISG TG+DRSDFSYKVIKDVQVVPRF+G+WGDI+ITLKDGTKVDLRSVPKFREIA+YC+
Sbjct: 125 VISGLTGQDRSDFSYKVIKDVQVVPRFVGEWGDIVITLKDGTKVDLRSVPKFREIAQYCL 184

Query: 181 SMAEQPVVFKETGPKGF 197
           SMA Q  V KE+  KGF
Sbjct: 185 SMAGQSSVLKESEAKGF 201

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356500423|ref|XP_003519031.1| PREDICTED: uncharacterized protein LOC100810178 [Glycine max]

 Score =  233 bits (594), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 120/157 (76%), Positives = 136/157 (86%), Gaps = 3/157 (1%)

Query: 41  HNRPITKLNVSSPPNETPITTSTSTTTTNKETVFFDGGAHYGDLLANLLLGFTLFWLPLT 100
           H R +T+L+VSS    T  T S +TTTT+ ET+FFDGGAHYGDL ANLLLGFTLFWLPLT
Sbjct: 38  HRRRLTRLHVSS---PTSSTPSPTTTTTSGETIFFDGGAHYGDLAANLLLGFTLFWLPLT 94

Query: 101 LAAVSRAFNLRYRFTNLRVTVISGWTGEDRSDFSYKVIKDVQVVPRFIGDWGDIIITLKD 160
           LAAVSRA  LRYRFTNLRV+VISG TG+DRSDF Y VIKDVQVVPRFIG+WGD++ITLKD
Sbjct: 95  LAAVSRAMYLRYRFTNLRVSVISGLTGQDRSDFGYNVIKDVQVVPRFIGEWGDVVITLKD 154

Query: 161 GTKVDLRSVPKFREIAKYCVSMAEQPVVFKETGPKGF 197
           GTKVDLRSVPKFREIAKYC+ MA++P+V  +TGPK F
Sbjct: 155 GTKVDLRSVPKFREIAKYCLLMAQKPLVLNQTGPKAF 191

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|56407685|gb|AAV88073.1| hypothetical protein 9 [Ipomoea batatas]

 Score =  227 bits (579), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 135/196 (68%), Positives = 153/196 (78%), Gaps = 16/196 (8%)

Query: 2   ASTRILSPTAAAAVGITHKSIYLFSKPPSPSSFPTFTVTHNRPITKLNVSSPPNETPITT 61
           +++R+LSP A       H+  YL S  P PS  P       RPITKL+VSS   +     
Sbjct: 7   SASRLLSPAATTITSHNHR--YL-SAIPHPSKSP-------RPITKLHVSS---KPSSPA 53

Query: 62  STSTTTTNKETVFFDGGAHYGDLLANLLLGFTLFWLPLTLAAVSRAFNLRYRFTNLRVTV 121
           +     +++ETVFFDGGAHYGDL+ANLLLGFTL WLPLTLAAV RAF+LRYRFTNLRVTV
Sbjct: 54  AAPAAKSSQETVFFDGGAHYGDLVANLLLGFTLLWLPLTLAAVFRAFSLRYRFTNLRVTV 113

Query: 122 ISGWTGEDRSDFSYKVIKDVQVVPRFIGDWGDIIITLKDGTKVDLRSVPKFREIAKYCVS 181
           ISG   +DRSDFSYKVIKDVQVVPRFIG+WGDI+ITLKDGTKVDLRSVPKFREIAKYC+S
Sbjct: 114 ISG---QDRSDFSYKVIKDVQVVPRFIGEWGDIVITLKDGTKVDLRSVPKFREIAKYCLS 170

Query: 182 MAEQPVVFKETGPKGF 197
           MAEQPV  KE+GPKGF
Sbjct: 171 MAEQPVDLKESGPKGF 186

Source: Ipomoea batatas

Species: Ipomoea batatas

Genus: Ipomoea

Family: Convolvulaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	197
TAIR|locus:505006122	196	AT1G14345 [Arabidopsis thalian	0.979	0.984	0.548	7.7e-48

TAIR|locus:505006122 AT1G14345 [Arabidopsis thaliana (taxid:3702)]

 Score = 500 (181.1 bits), Expect = 7.7e-48, P = 7.7e-48
 Identities = 108/197 (54%), Positives = 120/197 (60%)

Query:     2 ASTRILSPTAAAAVGITHKSIYLXXXXXXXXXXXX-XXXXHNRPITKLNVXXXXXXXXXX 60
             AS+ I  P + A   +  KS+ L                   R I +L +          
Sbjct:     3 ASSSI--PPSTAVTSVVRKSLLLSTTFSFPASSLSPSTKLPQRHIQRL-LLASSSASAST 59

Query:    61 XXXXXXXXXXXXVFFDGGAHYGDXXXXXXXXXXXXXXXXXXAAVSRAFNLRYRFTNLRVT 120
                         V+FDGGAHYGD                  AAVSRAFNLRYRFTNLRVT
Sbjct:    60 VPSDSKPAKKETVYFDGGAHYGDLLANLILGLTILWLPLTLAAVSRAFNLRYRFTNLRVT 119

Query:   121 VISGWTGEDRSDFSYKVIKDVQVVPRFIGDWGDIIITLKDGTKVDLRSVPKFREIAKYCV 180
             VISG TG+DRSDFSYKVIKDVQVVPRFIG+WGDIIITLKDGTKVDLRSVPKFREIAKYC+
Sbjct:   120 VISGLTGDDRSDFSYKVIKDVQVVPRFIGEWGDIIITLKDGTKVDLRSVPKFREIAKYCL 179

Query:   181 SMAEQPVVFKETGPKGF 197
             SMA+QP V KE+G KGF
Sbjct:   180 SMADQPAVLKESGAKGF 196


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.139   0.419    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      197       141   0.00091  102 3  11 22  0.40    31
                                                     30  0.47    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  583 (62 KB)
  Total size of DFA:  127 KB (2081 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.07u 0.14s 10.21t   Elapsed:  00:00:01
  Total cpu time:  10.07u 0.14s 10.21t   Elapsed:  00:00:01
  Start:  Fri May 10 11:06:31 2013   End:  Fri May 10 11:06:32 2013

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	197
pfam03703	79	pfam03703, DUF304, Bacterial PH domain	1e-13

>gnl|CDD|202729 pfam03703, DUF304, Bacterial PH domain

 Score = 63.0 bits (154), Expect = 1e-13
 Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 6/78 (7%)

Query: 108 FNLRYRFTNLRVTVISGWTGEDRSDFSYKVIKDVQVVPRFIGDW---GDIIITLKDGT-- 162
            N RYR T+ R+ V SG  G   +D     I+ V +    I      G I+I    G+  
Sbjct: 2   RNTRYRITDRRIVVRSGVLGRKTTDIPLSRIQSVSLEQSPIQRLLGLGTIVIDTAGGSVE 61

Query: 163 -KVDLRSVPKFREIAKYC 179
            K+ L SVP+  E+  Y 
Sbjct: 62  VKLPLLSVPEAEELRDYL 79

Domain found in uncharacterized family of membrane proteins. 1-3 copies found in each protein, with each copy flanked by transmembrane helices. Members of this family have a PH domain like structure. Length = 79

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	197
PF03703	80	bPH_2: Bacterial PH domain; InterPro: IPR005182 A	98.87
PF14470	96	bPH_3: Bacterial PH domain	97.45
COG3428	494	Predicted membrane protein [Function unknown]	94.57
PF08512	95	Rtt106: Histone chaperone Rttp106-like; InterPro:	90.25
PF08000	124	bPH_1: Bacterial PH domain; InterPro: IPR012544 Th	90.2
PF10882	100	bPH_5: Bacterial PH domain; InterPro: IPR020482 Th	89.75
COG3402	161	Uncharacterized conserved protein [Function unknow	89.09
PF06713	74	bPH_4: Bacterial PH domain; InterPro: IPR009589 Th	87.72
PF12462	166	Helicase_IV_N: DNA helicase IV / RNA helicase N te	87.28
PF10756	73	bPH_6: Bacterial PH domain; InterPro: IPR019692 Pr	80.13

>PF03703 bPH_2: Bacterial PH domain; InterPro: IPR005182 A domain that is found in uncharacterised family of membrane proteins

Probab=98.87  E-value=4.1e-09  Score=71.57  Aligned_cols=69  Identities=23%  Similarity=0.376  Sum_probs=63.9

Q ss_pred             eEeEEeeeEEEEeeccCCcccceeeeceeeeeEE----eeccccceeeEEEEecCCc----eEEeecccchHHHHHHH
Q 029220          110 LRYRFTNLRVTVISGWTGEDRSDFSYKVIKDVQV----VPRFIGDWGDIIITLKDGT----KVDLRSVPKFREIAKYC  179 (197)
Q Consensus       110 lRYrITnRRIsV~sGw~GrdrtdIvY~eI~dV~~----VpRG~G~WGDmVvtLkDGs----rLEmRslP~Frei~~yI  179 (197)
                      .+|.|||++|.+.+|+.++....+.|+.|.+|..    +-|.+|+ |++.+...+|+    .+.++++|++++++++|
T Consensus         4 ~~y~i~~~~l~i~~G~~~~~~~~i~~~~Iq~v~~~q~~~~r~~g~-~~i~i~~~~~~~~~~~i~~~~~~~a~~i~~~i   80 (80)
T PF03703_consen    4 TGYTITDDRLIIRSGLFSKRTTIIPLDRIQSVSIKQNPLQRLFGL-GTIKIDTAGGSGEKIEIPFLSIEDAEEIYDWI   80 (80)
T ss_pred             EEEEEECCEEEEEECeEEEEEEEEEhhHeEEEEEEcCHHHHhCcc-EEEEEEECCCCCceeEEecCCHHHHHHHHhhC
Confidence            4799999999999999999999999999999999    4477888 99999999999    69999999999999875

1-3 copies found in each protein, with each copy flanked by transmembrane helices.

>PF14470 bPH_3: Bacterial PH domain

Probab=97.45  E-value=0.00086  Score=47.15  Aligned_cols=68  Identities=24%  Similarity=0.329  Sum_probs=54.4

Q ss_pred             EeEEeeeEEEEeecc--CCcccceeeeceeeeeEEeeccccceeeEEEEecCCceEEeeccc--chHHHHHHHHh
Q 029220          111 RYRFTNLRVTVISGW--TGEDRSDFSYKVIKDVQVVPRFIGDWGDIIITLKDGTKVDLRSVP--KFREIAKYCVS  181 (197)
Q Consensus       111 RYrITnRRIsV~sGw--~GrdrtdIvY~eI~dV~~VpRG~G~WGDmVvtLkDGsrLEmRslP--~Frei~~yI~~  181 (197)
                      -+-+||+||-..+--  .+.+..+|.|++|.+|..- .|+.. +.+.+.. +|.++++.+++  +.+++++||++
T Consensus        25 ~l~~TnkRlif~~~~~~~~~~~~~i~y~~I~~v~~~-~g~~~-~~i~i~~-~~~~~~i~~i~k~~~~~~~~~i~~   96 (96)
T PF14470_consen   25 VLVLTNKRLIFYSKGMFGGKKFESIPYDDITSVSFK-KGILG-GKITIET-NGEKIKIDNIQKGDVKEFYEYIKE   96 (96)
T ss_pred             EEEEeCCEEEEEEcccCCCceEEEEEhhheEEEEEE-ccccc-cEEEEEE-CCEEEEEEEcCHHHHHHHHHHHhC
Confidence            467999999887554  3788999999999999995 67644 7788888 99999999886  46677777653

>COG3428 Predicted membrane protein [Function unknown]

Probab=94.57  E-value=0.034  Score=53.60  Aligned_cols=95  Identities=18%  Similarity=0.221  Sum_probs=63.4

Q ss_pred             HHHHHhHHHHHHHHHHHHhHhceeEeEEeeeEEEEeeccCCcccceeeeceeeeeEE----eeccccceeeEEEEec-CC
Q 029220           87 NLLLGFTLFWLPLTLAAVSRAFNLRYRFTNLRVTVISGWTGEDRSDFSYKVIKDVQV----VPRFIGDWGDIIITLK-DG  161 (197)
Q Consensus        87 nlllg~TlI~lPltiaAi~RalWlRYrITnRRIsV~sGw~GrdrtdIvY~eI~dV~~----VpRG~G~WGDmVvtLk-DG  161 (197)
                      -+++++++||+.+.   +.+=.-.+|||+|.-+.+..|..-|++..|.|++|..|.+    +-|-||+ -++=|.+. ||
T Consensus        47 ~~~~vv~vi~~i~~---ii~w~~~~Yried~~~~l~~Gi~~rk~r~i~~~RIQsVd~t~~lv~rlfgl-~~l~IeTaGg~  122 (494)
T COG3428          47 GAALVVLVIFLILQ---IIKWITFTYRIEDEEVRLQTGIFSRKKRYIPIDRIQSVDTTAGLVARLFGL-VVLRIETAGGG  122 (494)
T ss_pred             eehhhHHHHHHHHh---hhEEEEEEEEEecceEEEEeeEEeecceecchHhhhhhHHHHHHHHHhhcc-EEEEEEcCCCC
Confidence            34667778887776   4443347999999999999999999999999999999988    3444677 45555555 22


Q ss_pred             --ceEEeecccchHHHHHHHHhhhcC
Q 029220          162 --TKVDLRSVPKFREIAKYCVSMAEQ  185 (197)
Q Consensus       162 --srLEmRslP~Frei~~yI~~~~e~  185 (197)
                        +..|+-+.+==.+.....+|..-+
T Consensus       123 ~eae~~~~~~~i~~~~~~~~~e~~~k  148 (494)
T COG3428         123 GEAEAELVEREIAFELAALVREARVK  148 (494)
T ss_pred             CccceeeehhhhhHHHHHHHHHhhcc
Confidence              344443333333334444444433

>PF08512 Rtt106: Histone chaperone Rttp106-like; InterPro: IPR013719 This is a domain of unknown function that is associated with a number of different protein families

Probab=90.25  E-value=1.2  Score=33.18  Aligned_cols=54  Identities=19%  Similarity=0.306  Sum_probs=40.0

Q ss_pred             cccceeeeceeeeeEEeecc---ccceeeEEEEecC--CceEEeecccc--hHHHHHHHHhh
Q 029220          128 EDRSDFSYKVIKDVQVVPRF---IGDWGDIIITLKD--GTKVDLRSVPK--FREIAKYCVSM  182 (197)
Q Consensus       128 rdrtdIvY~eI~dV~~VpRG---~G~WGDmVvtLkD--GsrLEmRslP~--Frei~~yI~~~  182 (197)
                      |--.=|.|+||..|..- |-   -+..=||++++||  |..+++.++|+  +..+.+|+.++
T Consensus        28 kP~~~i~~~dI~~v~fe-Rv~~~~~ktFDl~v~~k~~~~~~~~fs~I~~~e~~~l~~~l~~~   88 (95)
T PF08512_consen   28 KPPFVIPLDDIESVEFE-RVSSFSSKTFDLVVILKDYEGPPHEFSSIDREEYDNLKDFLKSK   88 (95)
T ss_dssp             SS-EEEEGGGEEEEEEE---ESSSSSEEEEEEEETT-TS-EEEEEEEEGGGHHHHHHHHHHC
T ss_pred             CCeEEEEhhHeeEEEEE-ecccCcceEEEEEEEEecCCCCcEEEeeECHHHHHHHHHHHHHC
Confidence            45566889999888873 53   2444699999999  88999999885  78888998764

It is found in Rtt106p, which is a histone chaperone involved in heterochromatin-mediated silencing []. It is also found in genes annotated as transcription factors/regulators. This domain is the C-terminal domain of yeast Spt16p P32558 from SWISSPROT, which is a subunit of the heterodimeric yeast FACT complex (Spt16p-Pob3p, IPR000969 from INTERPRO) []. In addition Spt16p and its relatives, in this entry, are described as non-peptidase homologues belonging to the MEROPS peptidase family M24. The FACT complex facilitates RNA Polymerase II transcription elongation through nucleosomes by destabilising and then reassembling nucleosome structure [, ]. ; PDB: 3TW1_A 3GYO_A 3TO1_A 3FSS_A 3TVV_B 3GYP_A 2GCJ_D 2GCL_A.

>PF08000 bPH_1: Bacterial PH domain; InterPro: IPR012544 This family contains many bacterial hypothetical proteins

Probab=90.20  E-value=2.8  Score=33.50  Aligned_cols=73  Identities=19%  Similarity=0.274  Sum_probs=54.3

Q ss_pred             EeEEeeeEEEEee--ccCCccc--ceeeeceeeeeEEeeccccce-eeEEEEecCCc-eE--EeecccchHHHHHHHHhh
Q 029220          111 RYRFTNLRVTVIS--GWTGEDR--SDFSYKVIKDVQVVPRFIGDW-GDIIITLKDGT-KV--DLRSVPKFREIAKYCVSM  182 (197)
Q Consensus       111 RYrITnRRIsV~s--Gw~Grdr--tdIvY~eI~dV~~VpRG~G~W-GDmVvtLkDGs-rL--EmRslP~Frei~~yI~~~  182 (197)
                      -+-||||||-..-  |.+|+.+  ..|+|+.|..+..-.=|.... .++=+....+. .+  |++.--+.+++++.+.++
T Consensus        43 ~~vFTnkRlI~vD~QG~TGkK~~~~siPY~~I~~~siETAG~~DlD~Elki~i~~~~~~i~~~f~k~~di~~i~k~L~~~  122 (124)
T PF08000_consen   43 EIVFTNKRLILVDKQGITGKKVEYKSIPYSSITHFSIETAGTFDLDSELKIWISGQGFPIEFEFKKKTDIYEIYKALAEY  122 (124)
T ss_dssp             EEEEESSEEEEEEEESSSSSEEEEEEEEGGGEEEEEEEECSSTTSEEEEEEEETTESSEEEEEEGTTSHHHHHHHHHHHH
T ss_pred             eEEEecChheEEecccCccceEEEEEEehhhccEEEEEeCCcccCcccEEEEECCCcEEEEEecCCCCCHHHHHHHHHHH
Confidence            3569999987665  7888654  589999999999977776543 56666666544 34  488888888888888776


Q ss_pred             h
Q 029220          183 A  183 (197)
Q Consensus       183 ~  183 (197)
                      +
T Consensus       123 v  123 (124)
T PF08000_consen  123 V  123 (124)
T ss_dssp             H
T ss_pred             h
Confidence            4

; PDB: 3DCX_E 3HSA_C 3B77_D.

>PF10882 bPH_5: Bacterial PH domain; InterPro: IPR020482 This entry contains membrane proteins with no known function

Probab=89.75  E-value=0.45  Score=34.41  Aligned_cols=34  Identities=18%  Similarity=0.283  Sum_probs=28.2

Q ss_pred             eEeEEeeeEEEEeeccCCcccceeeeceeeeeEEeec
Q 029220          110 LRYRFTNLRVTVISGWTGEDRSDFSYKVIKDVQVVPR  146 (197)
Q Consensus       110 lRYrITnRRIsV~sGw~GrdrtdIvY~eI~dV~~VpR  146 (197)
                      |+|.+++..|.|..++.   +..|.|++|.+|.....
T Consensus         1 l~y~v~~~~l~I~~~~~---~~~Ip~~~I~~v~~~~~   34 (100)
T PF10882_consen    1 LRYEVDDDGLIIRWPFG---KITIPLAEIESVELVDD   34 (100)
T ss_pred             CEEEEECCEEEEEEccc---cEEEEHHHcEEEEeccc
Confidence            68999999999966654   78899999999987543

>COG3402 Uncharacterized conserved protein [Function unknown]

Probab=89.09  E-value=3.5  Score=35.17  Aligned_cols=74  Identities=14%  Similarity=0.175  Sum_probs=55.2

Q ss_pred             HhHhceeEeEEeeeEEEEeeccCCcccceeeeceeeeeEEeecc-----ccceeeEEEEecCCceEEeeccc--chHHHH
Q 029220          104 VSRAFNLRYRFTNLRVTVISGWTGEDRSDFSYKVIKDVQVVPRF-----IGDWGDIIITLKDGTKVDLRSVP--KFREIA  176 (197)
Q Consensus       104 i~RalWlRYrITnRRIsV~sGw~GrdrtdIvY~eI~dV~~VpRG-----~G~WGDmVvtLkDGsrLEmRslP--~Frei~  176 (197)
                      ++|-.=-||.|-..-+-+..||+=++|+=|+|..|.-|-+ .||     +|+ +.+.|++..+ ..++.+++  .=.++-
T Consensus        71 ~~Ryr~wry~v~~~el~iq~GiLv~~r~viP~~RVQhVDt-~~GPL~R~~~L-a~vti~TAss-~~~IeaL~~~eAdrlr  147 (161)
T COG3402          71 LVRYRVWRYEVEEDELDIQHGILVRTRTVIPYVRVQHVDT-EQGPLLRRYGL-ATVTITTASS-DHTIEALDREEADRLR  147 (161)
T ss_pred             HHhhhhheeecccceEEeeccEEEEEEEEeeEEEEEeeec-ccChHHHHhCc-ceEEEEeccc-cceecccCHHHHHHHH
Confidence            3443334899988999999999999999999999999887 466     898 9999998866 45555554  333444


Q ss_pred             HHHH
Q 029220          177 KYCV  180 (197)
Q Consensus       177 ~yI~  180 (197)
                      +.|.
T Consensus       148 ~~l~  151 (161)
T COG3402         148 ERLA  151 (161)
T ss_pred             HHHH
Confidence            4443

>PF06713 bPH_4: Bacterial PH domain; InterPro: IPR009589 This entry is represented by Bacteriophage SP-beta, YolF

Probab=87.72  E-value=4.5  Score=28.90  Aligned_cols=67  Identities=10%  Similarity=0.172  Sum_probs=42.1

Q ss_pred             EeEEeeeEEEEeeccCCcccceeeeceeeeeEEee----ccccceeeEEEEecCCceEEeecccchHHHHHHHHhhhc
Q 029220          111 RYRFTNLRVTVISGWTGEDRSDFSYKVIKDVQVVP----RFIGDWGDIIITLKDGTKVDLRSVPKFREIAKYCVSMAE  184 (197)
Q Consensus       111 RYrITnRRIsV~sGw~GrdrtdIvY~eI~dV~~Vp----RG~G~WGDmVvtLkDGsrLEmRslP~Frei~~yI~~~~e  184 (197)
                      +|.|+|..+.|..|+. +.+  |.|.+|++|+...    +-.+.---+.|..+++.. -+- -|+  +-++||.+..+
T Consensus         2 ~Y~i~~~~L~I~~G~~-~~~--I~i~~I~~I~~~~~~~~~~a~S~~rl~I~y~~~~~-i~I-sP~--~~~~FI~~L~k   72 (74)
T PF06713_consen    2 KYIIEDDYLIIKCGFF-KKK--IPIEDIRSIRPTKNPLSSPALSLDRLEIYYGKYKS-ILI-SPK--DKEEFIAELQK   72 (74)
T ss_pred             EEEEeCCEEEEEECCc-ccE--EEhHHccEEEecCCccccccccccEEEEEECCCCE-EEE-ECC--CHHHHHHHHHh
Confidence            7999999999999944 444  9999999999862    122222344455443333 222 243  44566665543

The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical proteins specific to Oceanobacillus and Bacillus species. Members of this family are typically around 130 residues in length. The function of this family is unknown.

>PF12462 Helicase_IV_N: DNA helicase IV / RNA helicase N terminal; InterPro: IPR022161 This domain family is found in bacteria and eukaryotes, and is approximately 170 amino acids in length

Probab=87.28  E-value=1.5  Score=35.91  Aligned_cols=56  Identities=23%  Similarity=0.399  Sum_probs=48.0

Q ss_pred             EeEEeeeEEEEeeccCCcccceeeeceee-eeEEeeccccceeeEEEEecCCceEEeecccc
Q 029220          111 RYRFTNLRVTVISGWTGEDRSDFSYKVIK-DVQVVPRFIGDWGDIIITLKDGTKVDLRSVPK  171 (197)
Q Consensus       111 RYrITnRRIsV~sGw~GrdrtdIvY~eI~-dV~~VpRG~G~WGDmVvtLkDGsrLEmRslP~  171 (197)
                      +-++-|-.|.|.++   +....|.++++. .|++ .||+ .||.+.+++.|+.-+-|+++|.
T Consensus        19 ~v~L~~~~l~ls~~---~~~~~Ipf~~~~g~i~~-krGl-~Wg~L~f~~~~~~~v~l~Gl~w   75 (166)
T PF12462_consen   19 RVELDNAGLELSSD---GHEYRIPFNQLSGSIQV-KRGL-FWGELEFFLPDQKVVRLHGLPW   75 (166)
T ss_pred             eEEEcCCEEEEEeC---CeEEEecHHHhccceee-ecce-eEEEEEEEcCCCcEEEEcCCcc
Confidence            55677788877776   777889999999 6665 7999 8999999999999999999996

The family is found in association with PF00580 from PFAM. Nucleolin unwinds nucleic acid strands in the 5' to 3' direction with respect to the bound strand. It can unwind RNA-RNA duplexes, as well as DNA-DNA and DNA-RNA duplexes. Nucleolin is modulated by phosphorylation of serine and threonine residues in its N-terminal region.

>PF10756 bPH_6: Bacterial PH domain; InterPro: IPR019692 Proteins in this entry are conserved in the Actinomycetales

Probab=80.13  E-value=5.4  Score=27.87  Aligned_cols=52  Identities=23%  Similarity=0.327  Sum_probs=40.8

Q ss_pred             EeEEeeeEEEEeeccCCcccceeeeceeeeeEEeeccccceeeEEEEecCCceEEeecc
Q 029220          111 RYRFTNLRVTVISGWTGEDRSDFSYKVIKDVQVVPRFIGDWGDIIITLKDGTKVDLRSV  169 (197)
Q Consensus       111 RYrITnRRIsV~sGw~GrdrtdIvY~eI~dV~~VpRG~G~WGDmVvtLkDGsrLEmRsl  169 (197)
                      |-.+++..|.|.+.+   .+..+.++||.+|+.  +.-+-|  +.+.+.||..+-|.++
T Consensus         3 rv~v~~~Gl~vr~~~---rt~~vpW~~I~~v~~--~~~~~~--v~~~~~dg~~~~l~~~   54 (73)
T PF10756_consen    3 RVEVDPDGLRVRNLF---RTRRVPWSEIAGVRF--RRGRRW--VRLDLRDGRLVPLPAV   54 (73)
T ss_pred             eEEEcCCcEEEEcCc---eeEEEChHHeEEEEc--cCCceE--EEEECCCCCEEEEeeE
Confidence            456788889999887   466799999999995  233445  8999999998877654

Although several members are annotated as RbiX homologues, RbiX being a putative regulator of riboflavin biosynthesis, the function could not be confirmed. This entry also includes low molecular weight protein antigen 6.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	197
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 3e-05
 Identities = 34/234 (14%), Positives = 57/234 (24%), Gaps = 63/234 (26%)

Query: 10  TAAAAVGITHKSIYLF--------SKPPSPSSFPTFTVTHNR------PITKLNVSSPPN 55
                V    +  Y F         + PS  +   +    +R         K NVS    
Sbjct: 78  MVQKFVEEVLRINYKFLMSPIKTEQRQPSMMT-RMYIEQRDRLYNDNQVFAKYNVSRLQP 136

Query: 56  ETPITTSTSTTTTNKETVFFDGGAHYG-DLLANLLL---------GFTLFWLPLTLAAVS 105
              +  +       K  V  DG    G   +A  +           F +FW  L L   +
Sbjct: 137 YLKLRQALLELRPAK-NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW--LNLKNCN 193

Query: 106 RAFNLRYRFTNLRVTVISGWTGEDRSDFSYK------------------------VIKDV 141
               +      L   +   WT       + K                        V+ +V
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV 253

Query: 142 Q---VVPRFIGDWG-DIIITLKDGTKVDLRSVPKFREIAKYCVSMAEQPVVFKE 191
           Q       F  +    I++T +     D  S           +S+    +    
Sbjct: 254 QNAKAWNAF--NLSCKILLTTRFKQVTDFLSAATTTH-----ISLDHHSMTLTP 300

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	197
3hsa_A	126	Pleckstrin homology domain; YP_926556.1, structura	92.48
3b77_A	193	Uncharacterized protein; pleckstrin-homology domai	88.68

>3hsa_A Pleckstrin homology domain; YP_926556.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE MLY; 1.99A {Shewanella amazonensis SB2B} SCOP: b.55.1.13 PDB: 3dcx_A*

Probab=92.48  E-value=1.1  Score=35.09  Aligned_cols=73  Identities=19%  Similarity=0.203  Sum_probs=56.4

Q ss_pred             EeEEeeeEEEEee--ccCCccc--ceeeeceeeeeEEeeccc-cceeeEEEEecCCc---eEEeecccchHHHHHHHHhh
Q 029220          111 RYRFTNLRVTVIS--GWTGEDR--SDFSYKVIKDVQVVPRFI-GDWGDIIITLKDGT---KVDLRSVPKFREIAKYCVSM  182 (197)
Q Consensus       111 RYrITnRRIsV~s--Gw~Grdr--tdIvY~eI~dV~~VpRG~-G~WGDmVvtLkDGs---rLEmRslP~Frei~~yI~~~  182 (197)
                      -|-|||+|+-+.-  |.+|+.+  ..++|+.|..+..-.-|. -+=..+=+.+..+.   ++|++.--+.+++++.|.+.
T Consensus        44 ~~iFTnkRLI~vD~QG~TGkK~~~~siPY~sI~~~siETAG~fDlDaElki~isg~~~pi~~~f~k~~di~~i~k~La~~  123 (126)
T 3hsa_A           44 LFVFTSXRLILIDXQGVTGXXVSYHSIPYXAIVHFQVETAGTFDMDAELXLWISGQHEPLVXELXRGTDVVGIQXTIARY  123 (126)
T ss_dssp             EEEEESSEEEEEEEESTTSCEEEEEEEEGGGEEEEEEEEESTTSCEEEEEEEETTCSSCEEEEECTTSCHHHHHHHHHHH
T ss_pred             eEEEccchheEEecCcCcccceEEEEeccceeeEEEEeccccccCCceEEEEEcCCceEEEEeccCcccHHHHHHHHHHH
Confidence            4679999987764  6788655  499999999999877774 33356777777655   78899999999999988776


Q ss_pred             h
Q 029220          183 A  183 (197)
Q Consensus       183 ~  183 (197)
                      +
T Consensus       124 v  124 (126)
T 3hsa_A          124 A  124 (126)
T ss_dssp             H
T ss_pred             h
Confidence            4

>3b77_A Uncharacterized protein; pleckstrin-homology domain, structural genomics, joint cente structural genomics, JCSG; 2.42A {Exiguobacterium sibiricum} SCOP: b.55.1.13

Probab=88.68  E-value=1.6  Score=36.70  Aligned_cols=74  Identities=19%  Similarity=0.263  Sum_probs=53.6

Q ss_pred             EeEEeeeEEEEee--ccCCcccc--eeeec--eeeeeEEeecccc-ceeeEEEEecCCc-eEEeec--ccchHHHHHHHH
Q 029220          111 RYRFTNLRVTVIS--GWTGEDRS--DFSYK--VIKDVQVVPRFIG-DWGDIIITLKDGT-KVDLRS--VPKFREIAKYCV  180 (197)
Q Consensus       111 RYrITnRRIsV~s--Gw~Grdrt--dIvY~--eI~dV~~VpRG~G-~WGDmVvtLkDGs-rLEmRs--lP~Frei~~yI~  180 (197)
                      -|-|||+||-+.-  |.+|+.+.  .++|+  .|..+..-.-|.. +=..|-+....+. .+|++.  .-+.+++|+.+.
T Consensus        40 ~~iFTNkRLI~vD~Qg~TGKK~~~~siPY~~~~I~~~siETAGtfDlDaElki~i~~~~~~Ief~K~~~~di~~lyk~L~  119 (193)
T 3b77_A           40 EYCFTNLALVHLDGESAVSSKRVLYRYPYAHYPIRHVMFETAGTVDLDVEIKFEIGGKHYSIDVDKKQLEHVKDLYKALL  119 (193)
T ss_dssp             EEEEESSEEEEEECCCC--CCCEEEEEETTTSCEEEEEEECCCSSCCEEEEEEEETTEEEEEEEEGGGHHHHHHHHHHHH
T ss_pred             EEEEecchhheeccccccceeEEEEEeccCCCceeEEEEEecceeccCccEEEEEcCceEEEEeCCcchhhHHHHHHHHH
Confidence            4779999998776  67887665  49999  9999998777753 3356666666544 688887  778899998877


Q ss_pred             hhhc
Q 029220          181 SMAE  184 (197)
Q Consensus       181 ~~~e  184 (197)
                      +..+
T Consensus       120 ~is~  123 (193)
T 3b77_A          120 AIAE  123 (193)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	197
d3dcxa1	116	Uncharacterized protein Shew0819 {Shewanella loihi	92.43
d2gcla1	238	FACT complex subunit POB3, middle domain {Baker's	89.97

>d3dcxa1 b.55.1.13 (A:9-124) Uncharacterized protein Shew0819 {Shewanella loihica [TaxId: 359303]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: BPHL domain
domain: Uncharacterized protein Shew0819
species: Shewanella loihica [TaxId: 359303]

Probab=92.43  E-value=0.49  Score=34.88  Aligned_cols=71  Identities=23%  Similarity=0.302  Sum_probs=55.1

Q ss_pred             eEEeeeEEEEee--ccCCcc--cceeeeceeeeeEEeeccccce-eeEEEEecCCc---eEEeecccchHHHHHHHHhh
Q 029220          112 YRFTNLRVTVIS--GWTGED--RSDFSYKVIKDVQVVPRFIGDW-GDIIITLKDGT---KVDLRSVPKFREIAKYCVSM  182 (197)
Q Consensus       112 YrITnRRIsV~s--Gw~Grd--rtdIvY~eI~dV~~VpRG~G~W-GDmVvtLkDGs---rLEmRslP~Frei~~yI~~~  182 (197)
                      |-|||+||-+.-  |..||.  ...++|+.|..+.+-.-|...+ .++-+....+.   ++|++.--+-.++++.|.+.
T Consensus        36 ~~FTnkRlI~vD~qg~tGkK~~~~siPY~~I~~~siEtAGtfD~DsElki~~~~~~~~i~~ef~~~~di~~i~~~La~~  114 (116)
T d3dcxa1          36 FVFTNKRLILIDKQGVTGKKVSYHSVPYKAITHFEVETAGTFDMDAELKLWISGQKDPLVKELKKGTDVVGIQKTIANF  114 (116)
T ss_dssp             EEEESSEEEEEEEESSSCCEEEEEEEEGGGEEEEEEECCSSTTSCEEEEEEETTCSSCEEEEECBTSCHHHHHHHHHHH
T ss_pred             EEEecceEEEEeccccccceEEEEEEehhHeEEEEEEeCccccCcccEEEEEecCceEEEEEeCCccCHHHHHHHHHHh
Confidence            558999987664  788854  4579999999999988887655 56777777443   45889999999999888765

>d2gcla1 b.55.1.10 (A:237-474) FACT complex subunit POB3, middle domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: SSRP1-like
domain: FACT complex subunit POB3, middle domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.97  E-value=0.26  Score=39.06  Aligned_cols=54  Identities=11%  Similarity=0.155  Sum_probs=40.3

Q ss_pred             cccceeeeceeeeeEEeecc-cc----ceeeEEEEecCCc-eEEeecccc--hHHHHHHHHhh
Q 029220          128 EDRSDFSYKVIKDVQVVPRF-IG----DWGDIIITLKDGT-KVDLRSVPK--FREIAKYCVSM  182 (197)
Q Consensus       128 rdrtdIvY~eI~dV~~VpRG-~G----~WGDmVvtLkDGs-rLEmRslP~--Frei~~yI~~~  182 (197)
                      +--.=|.|+||..|.. -|- .|    .-=||+|++|||. ..|+-++|+  |..+.+|+.++
T Consensus       171 KP~~~i~~~eI~~V~f-~Rv~~~~~~~rtFD~~v~~k~~~~~~~fs~I~~~e~~~i~~~l~~~  232 (238)
T d2gcla1         171 KPTLYIPFSDVSMVNI-SRAGQTSTSSRTFDLEVVLRSNRGSTTFANISKEEQQLLEQFLKSK  232 (238)
T ss_dssp             SSCEEEEGGGEEEEEE-EC--------CEEEEEEEESTTCCEEEEEEEEGGGHHHHHHHHHHT
T ss_pred             CCcEEEEehhEeEEEE-EeecCCccccceeeEEEEEeCCCccEEEeccCHHHHHHHHHHHHHC
Confidence            3345588999988887 473 22    2349999999997 578888886  88999999875