Citrus Sinensis ID: 029231

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------
Protein Sequence
MSTFDSVDSVPVAEYTHSFDDTAEQLNSAVDLSDDNNNSSFQSGDDAFASQTSVYGEYADGGSDGPILPPPSDMVPEEGFALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRKSIVTRENNKASNREREKVSGDFKILLVFVACFSFLNKSHCGCMHVMFVIIYVCFDLFMYLMLVQIFSNFSIVQYYI
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEcc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHccccHHHHHHHHHHHHHHcccccccHHEEEEEEEHHHHHHHHHHHHHHHHcccEEEEEc
Coil and Loop (DISEMBL)
mstfdsvdsvpvaeythsfddtAEQLnsavdlsddnnnssfqsgddafasqtsvygeyadggsdgpilpppsdmvpeegFALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRKSIVTrennkasnrerekvsgDFKILLVFVACFSFlnkshcgcmHVMFVIIYVCFDLFMYLMLVQIFSNFSIVQYYI
Flexible Loop (DISEMBL)
mstfdsvdsvpVAEYTHSFDDTAEQLNSAVDLSDDNNNSSFQSGDDAFASQTSVYGEYADGGSDGPILPPPSDMVPEEGFALREWRRENAIRleekekkeKEMLNQIIEEaeeyklefyrksivtrennkasnrerekvsgdFKILLVFVACFSFLNKSHCGCMHVMFVIIYVCFDLFMYLMLVQIFSNFSIVQYYI
Low Complexity Region (SEG)
MSTFDSVDSVPVAEYTHSFDDTAEQLNSAVDLSDDNNNSSFQSGDDAFASQTSVYGEYADGGSDGPILPPPSDMVPEEGFALREWRRENAIRLeekekkekeMLNQIIEEAEEYKLEFYRKSIVTRENNKASNREREKVSGDFKILLVFVACFSFLNKSHCGCMHVMFVIIYVCFDLFMYLMLVQIFSNFSIVQYYI
Disordered region (IsUnstruct)
**********************************************************************************************************IIEEAEEYKLEFYRKSIV****************GDFKILLVFVACFSFLNKSHCGCMHVMFVIIYVCFDLFMYLMLVQIFSNFSIVQYY*
Disordered Region (DISOPRED)
************************************************************************************W*************************AEEYKLEFYRKS******************GDFKILLVFVACFSFLNKSHCGCMHVMFVIIYVCFDLFMYLMLVQIFSNFSIVQYYI
Disordered Region (DISEMBL)
*********VPVAEYTHSFDDTAEQLNSAVDLSDDNNNSSFQSGDDAFASQTSVYGEYADGGSDGPILPPPSDMVPEEGFALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRKSIVT************KVSGDFKILLVFVACFSFLNKSHCGCMHVMFVIIYVCFDLFMYLMLVQIFSNFSIVQYYI
Disordered Region (DISPRO)
**************************************************************SDGPILPPPSDMVPEEGFALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRKSIVTRENNKASNREREKVSGDFKILLVFVACFSFLNKSHCGCMHVMFVIIYVCFDLFMYLMLVQIFSNFSIVQYYI
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHi
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSTFDSVDSVPVAEYTHSFDDTAEQLNSAVDLSDDNNNSSFQSGDDAFASQTSVYGEYADGGSDGPILPPPSDMVPEEGFAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxFYRKSIVTRENNKASNREREKVSGDFKILLVFVACFSFLNKSHCGCMHVMFVIIYVCFDLFMYLMLVQIFSNFSIVQYYI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	197	2.2.26 [Sep-21-2011]
O04209	258	Clathrin light chain 2 OS	yes	no	0.629	0.480	0.537	1e-23
F4J5M9	258	Clathrin light chain 3 OS	no	no	0.365	0.279	0.736	2e-17
Q7XKE9	301	Clathrin light chain 1 OS	yes	no	0.395	0.259	0.653	3e-16
Q9SKU1	338	Clathrin light chain 1 OS	no	no	0.385	0.224	0.662	3e-14
Q5Z402	291	Clathrin light chain 2 OS	no	no	0.436	0.295	0.536	6e-14
Q6Z3A8	363	Clathrin light chain 3 OS	no	no	0.390	0.212	0.538	4e-12

>sp|O04209|CLC2_ARATH Clathrin light chain 2 OS=Arabidopsis thaliana GN=CLC2 PE=1 SV=1

 Score =  109 bits (273), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/145 (53%), Positives = 103/145 (71%), Gaps = 21/145 (14%)

Query: 5   DSVDSVPVAEYTHSFD--DTAEQLNSAVDLSDDNNNSSFQSGDDAFASQTSVYGEYADG- 61
           D+ +SVPV   + SFD  D+    + ++ + D        S DD FA+ +S YG Y++G 
Sbjct: 15  DASESVPV---SGSFDATDSFSAFDGSLQVED--------SVDDVFAAPSSDYGAYSNGD 63

Query: 62  ---GS----DGPILPPPSDMVPEEGFALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEY 114
              GS    DGPILPPPS+M  +EGFALREWRR+NAI+LEEKEK+EKE+L QIIEEA++Y
Sbjct: 64  GIFGSNGDHDGPILPPPSEMESDEGFALREWRRQNAIQLEEKEKREKELLKQIIEEADQY 123

Query: 115 KLEFYRKSIVTRENNKASNREREKV 139
           K EF++K  VT ENNKA+NRE+EK+
Sbjct: 124 KEEFHKKIEVTCENNKAANREKEKL 148

Clathrin is the major protein of the polyhedral coat of coated pits and vesicles.
Arabidopsis thaliana (taxid: 3702)

>sp|F4J5M9|CLC3_ARATH Clathrin light chain 3 OS=Arabidopsis thaliana GN=At3g51890 PE=2 SV=1

 Score = 89.0 bits (219), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/72 (73%), Positives = 59/72 (81%)

Query: 67  ILPPPSDMVPEEGFALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRKSIVTR 126
           ILPPPS M  EEGFALREWRR NA+RLEEKEK+EKEM+ QI+E AE+YK EFY K  VT 
Sbjct: 85  ILPPPSAMEKEEGFALREWRRLNALRLEEKEKEEKEMVQQILEAAEQYKAEFYSKRNVTI 144

Query: 127 ENNKASNREREK 138
           ENNK  NRE+EK
Sbjct: 145 ENNKKLNREKEK 156

Clathrin is the major protein of the polyhedral coat of coated pits and vesicles.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XKE9|CLC1_ORYSJ Clathrin light chain 1 OS=Oryza sativa subsp. japonica GN=Os04g0679100 PE=2 SV=1

 Score = 84.7 bits (208), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 51/78 (65%), Positives = 58/78 (74%)

Query: 62  GSDGPILPPPSDMVPEEGFALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRK 121
           G DGPILPPP+ M  EEG  LREWRR+NAI LEEKE+KEKE+  QI+ EAEE+K  FY K
Sbjct: 92  GGDGPILPPPAQMGAEEGILLREWRRQNAIVLEEKERKEKELRAQILAEAEEFKKAFYEK 151

Query: 122 SIVTRENNKASNREREKV 139
            I   E NK  NREREK+
Sbjct: 152 RIQNCETNKVHNREREKI 169

Clathrin is the major protein of the polyhedral coat of coated pits and vesicles.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9SKU1|CLC1_ARATH Clathrin light chain 1 OS=Arabidopsis thaliana GN=At2g20760 PE=2 SV=1

 Score = 78.6 bits (192), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 51/77 (66%), Positives = 57/77 (74%), Gaps = 1/77 (1%)

Query: 63  SDGPILPPPSDMVPEEGFALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRKS 122
           SDGPILP P++M  EEGF  REWRR N I LEEKEKKEKEM NQII EAE++K  FY K 
Sbjct: 93  SDGPILPDPNEMR-EEGFQRREWRRLNTIHLEEKEKKEKEMRNQIITEAEDFKKAFYEKR 151

Query: 123 IVTRENNKASNREREKV 139
             T E NK  NRE+EK+
Sbjct: 152 DKTIETNKTDNREKEKL 168

Clathrin is the major protein of the polyhedral coat of coated pits and vesicles.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5Z402|CLC2_ORYSJ Clathrin light chain 2 OS=Oryza sativa subsp. japonica GN=Os06g0731800 PE=2 SV=1

 Score = 77.4 bits (189), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 51/95 (53%), Positives = 64/95 (67%), Gaps = 9/95 (9%)

Query: 45  DDAFASQTSVYGEYADGGSDGPILPPPSDMVPEEGFALREWRRENAIRLEEKEKKEKEML 104
           DD FA+  +          +GP+LPPP+ M  +EGF LREWRR+NAI LEEKEKKEKEM 
Sbjct: 66  DDPFAAPDN---------DNGPVLPPPNQMGADEGFLLREWRRQNAILLEEKEKKEKEMR 116

Query: 105 NQIIEEAEEYKLEFYRKSIVTRENNKASNREREKV 139
           NQII +A+E+K  F  K  +  E +K  NREREK+
Sbjct: 117 NQIILDAKEFKKAFVEKRKLNVETSKDQNREREKL 151

Clathrin is the major protein of the polyhedral coat of coated pits and vesicles.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6Z3A8|CLC3_ORYSJ Clathrin light chain 3 OS=Oryza sativa subsp. japonica GN=Os07g0461500 PE=3 SV=1

 Score = 71.2 bits (173), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 42/78 (53%), Positives = 55/78 (70%), Gaps = 1/78 (1%)

Query: 62  GSDGPILPPPSDMVPEEGFALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRK 121
           G DGP+LPPP  M  EEG   REWRR+NA+ LEEKE+KE+E   +II EA+E+K  F  K
Sbjct: 133 GDDGPVLPPPEAMK-EEGILRREWRRQNALMLEEKERKERERRGEIIAEADEFKRSFAEK 191

Query: 122 SIVTRENNKASNREREKV 139
             +  + N+A NR+REK+
Sbjct: 192 RKLNGDTNRAQNRDREKL 209

Clathrin is the major protein of the polyhedral coat of coated pits and vesicles.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	197
224112533	252	predicted protein [Populus trichocarpa]	0.507	0.396	0.575	3e-27
118485757	151	unknown [Populus trichocarpa]	0.492	0.642	0.712	7e-26
224139084	177	predicted protein [Populus trichocarpa]	0.492	0.548	0.702	1e-25
255571907	268	conserved hypothetical protein [Ricinus	0.507	0.373	0.669	7e-25
224098537	258	predicted protein [Populus trichocarpa]	0.675	0.515	0.455	5e-23
356494973	260	PREDICTED: uncharacterized protein LOC10	0.426	0.323	0.747	6e-23
388491146	313	unknown [Medicago truncatula]	0.390	0.246	0.688	4e-22
18405251	258	Clathrin light chain protein [Arabidopsi	0.629	0.480	0.537	5e-22
255574399	282	conserved hypothetical protein [Ricinus	0.634	0.443	0.485	5e-22
449460303	290	PREDICTED: clathrin light chain 3-like [	0.502	0.341	0.557	7e-22

>gi|224112533|ref|XP_002316222.1| predicted protein [Populus trichocarpa] gi|222865262|gb|EEF02393.1| predicted protein [Populus trichocarpa]

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 61/106 (57%), Positives = 81/106 (76%), Gaps = 6/106 (5%)

Query: 40  SFQSGDDAFASQTSVYGEYA------DGGSDGPILPPPSDMVPEEGFALREWRRENAIRL 93
           SF +G+D F SQ  +YGE++       GG +GPI PPPS+   E+GFALREWRR+NAI L
Sbjct: 34  SFAAGNDVFESQLPIYGEFSPLENGGSGGPEGPIFPPPSEKDAEQGFALREWRRQNAILL 93

Query: 94  EEKEKKEKEMLNQIIEEAEEYKLEFYRKSIVTRENNKASNREREKV 139
           E+KEK+EKE L+QII+EAE+YK+E Y+K  +  ENNK +NRE+EK+
Sbjct: 94  EDKEKREKEALSQIIKEAEDYKVESYKKREIACENNKITNREKEKL 139

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118485757|gb|ABK94728.1| unknown [Populus trichocarpa]

 Score =  122 bits (307), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 72/101 (71%), Positives = 81/101 (80%), Gaps = 4/101 (3%)

Query: 43  SGDDAFASQT----SVYGEYADGGSDGPILPPPSDMVPEEGFALREWRRENAIRLEEKEK 98
           +GDD F+SQ       +    +G SDGPILPPPS+M  EEGFALREWRRENAIRLEEKEK
Sbjct: 40  TGDDLFSSQPVSDDGGFSPEQNGISDGPILPPPSEMESEEGFALREWRRENAIRLEEKEK 99

Query: 99  KEKEMLNQIIEEAEEYKLEFYRKSIVTRENNKASNREREKV 139
           KEKEML QI+EEAEEYK EFYRK  +T ENNKA+NRE+EKV
Sbjct: 100 KEKEMLKQIVEEAEEYKKEFYRKRQLTLENNKAANREKEKV 140

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224139084|ref|XP_002322976.1| predicted protein [Populus trichocarpa] gi|222867606|gb|EEF04737.1| predicted protein [Populus trichocarpa]

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 71/101 (70%), Positives = 81/101 (80%), Gaps = 4/101 (3%)

Query: 43  SGDDAFASQT----SVYGEYADGGSDGPILPPPSDMVPEEGFALREWRRENAIRLEEKEK 98
           +GDD F+SQ       +    +G SDGPILPPPS+M  EEGFALREWRRENAIRLEEKEK
Sbjct: 40  TGDDLFSSQPVSDDGGFSPEQNGISDGPILPPPSEMESEEGFALREWRRENAIRLEEKEK 99

Query: 99  KEKEMLNQIIEEAEEYKLEFYRKSIVTRENNKASNREREKV 139
           KEKEML QI+EEAEEYK EFYRK  +T ENNKA+NRE+EK+
Sbjct: 100 KEKEMLKQIVEEAEEYKKEFYRKRQLTLENNKAANREKEKL 140

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255571907|ref|XP_002526896.1| conserved hypothetical protein [Ricinus communis] gi|223533795|gb|EEF35527.1| conserved hypothetical protein [Ricinus communis]

 Score =  119 bits (298), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 71/106 (66%), Positives = 86/106 (81%), Gaps = 6/106 (5%)

Query: 40  SFQSGDDAFAS---QTSVYGEYA---DGGSDGPILPPPSDMVPEEGFALREWRRENAIRL 93
           SF   DD F S   Q + Y ++A   +GGSDGPILPPPS M  EEGFALREWRRENA++L
Sbjct: 44  SFTGNDDVFESHHHQPAAYVDFASEENGGSDGPILPPPSGMEAEEGFALREWRRENALKL 103

Query: 94  EEKEKKEKEMLNQIIEEAEEYKLEFYRKSIVTRENNKASNREREKV 139
           EEKEK+EKE+L+QII+EA+EYK+EFYRK  +T ENNKA+NRE+EKV
Sbjct: 104 EEKEKREKEILSQIIQEADEYKVEFYRKREITCENNKATNREKEKV 149

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224098537|ref|XP_002311210.1| predicted protein [Populus trichocarpa] gi|222851030|gb|EEE88577.1| predicted protein [Populus trichocarpa]

 Score =  113 bits (282), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 66/145 (45%), Positives = 92/145 (63%), Gaps = 12/145 (8%)

Query: 1   MSTFDSVDSVPVAEYTHSFDDTAEQLNSAVDLSDDNNNSSFQSGDDAFASQTSVYGEYAD 60
           MS F   +S   +E T  FDD     +S    +    + SF +GDD   SQ  +YG+++ 
Sbjct: 1   MSAF--AESFAQSESTRPFDDD----DSYAGYNSQPFDDSFATGDDVLESQPPIYGQFSP 54

Query: 61  ------GGSDGPILPPPSDMVPEEGFALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEY 114
                 GGS+G I   PS+   E+G AL EWRR+N I LE+KE++EKE+L+QII+EAE+Y
Sbjct: 55  QENGEFGGSEGRISLSPSETEAEQGLALIEWRRQNVILLEDKERREKEVLSQIIKEAEDY 114

Query: 115 KLEFYRKSIVTRENNKASNREREKV 139
           K+EFY+K   T ENNK +NRE+EK+
Sbjct: 115 KVEFYKKRQFTCENNKTTNREKEKL 139

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356494973|ref|XP_003516355.1| PREDICTED: uncharacterized protein LOC100783050 [Glycine max]

 Score =  112 bits (281), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 65/87 (74%), Positives = 74/87 (85%), Gaps = 3/87 (3%)

Query: 56  GEYADGG---SDGPILPPPSDMVPEEGFALREWRRENAIRLEEKEKKEKEMLNQIIEEAE 112
           G+  DGG   SDGPILPPP++MV +EGFALREWR +NAI+LEEKEKKEKEM +QIIEEAE
Sbjct: 55  GKGVDGGFGASDGPILPPPTNMVAKEGFALREWRMQNAIQLEEKEKKEKEMRSQIIEEAE 114

Query: 113 EYKLEFYRKSIVTRENNKASNREREKV 139
           EYK+EFYRK  V  E NKASNREREK+
Sbjct: 115 EYKIEFYRKREVNAEKNKASNREREKL 141

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388491146|gb|AFK33639.1| unknown [Medicago truncatula]

 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 53/77 (68%), Positives = 61/77 (79%)

Query: 63  SDGPILPPPSDMVPEEGFALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRKS 122
           SDGPILPPP +M  EEG+ALREWRR+NAI L EKEK+EKEM  +IIEEAEEYK+ FY K 
Sbjct: 97  SDGPILPPPGEMESEEGYALREWRRQNAIELVEKEKREKEMRLKIIEEAEEYKVAFYEKR 156

Query: 123 IVTRENNKASNREREKV 139
            +  E NK  NREREK+
Sbjct: 157 KLNVETNKVQNREREKL 173

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18405251|ref|NP_565921.1| Clathrin light chain protein [Arabidopsis thaliana] gi|75096962|sp|O04209.1|CLC2_ARATH RecName: Full=Clathrin light chain 2 gi|2088662|gb|AAB95291.1| expressed protein [Arabidopsis thaliana] gi|20260192|gb|AAM12994.1| unknown protein [Arabidopsis thaliana] gi|21387051|gb|AAM47929.1| unknown protein [Arabidopsis thaliana] gi|110741048|dbj|BAE98618.1| hypothetical protein [Arabidopsis thaliana] gi|330254676|gb|AEC09770.1| Clathrin light chain protein [Arabidopsis thaliana]

 Score =  109 bits (273), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 78/145 (53%), Positives = 103/145 (71%), Gaps = 21/145 (14%)

Query: 5   DSVDSVPVAEYTHSFD--DTAEQLNSAVDLSDDNNNSSFQSGDDAFASQTSVYGEYADG- 61
           D+ +SVPV   + SFD  D+    + ++ + D        S DD FA+ +S YG Y++G 
Sbjct: 15  DASESVPV---SGSFDATDSFSAFDGSLQVED--------SVDDVFAAPSSDYGAYSNGD 63

Query: 62  ---GS----DGPILPPPSDMVPEEGFALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEY 114
              GS    DGPILPPPS+M  +EGFALREWRR+NAI+LEEKEK+EKE+L QIIEEA++Y
Sbjct: 64  GIFGSNGDHDGPILPPPSEMESDEGFALREWRRQNAIQLEEKEKREKELLKQIIEEADQY 123

Query: 115 KLEFYRKSIVTRENNKASNREREKV 139
           K EF++K  VT ENNKA+NRE+EK+
Sbjct: 124 KEEFHKKIEVTCENNKAANREKEKL 148

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574399|ref|XP_002528113.1| conserved hypothetical protein [Ricinus communis] gi|223532502|gb|EEF34292.1| conserved hypothetical protein [Ricinus communis]

 Score =  109 bits (273), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 65/134 (48%), Positives = 91/134 (67%), Gaps = 9/134 (6%)

Query: 8   DSVPVAEYTHSFDDTAEQLNSAVDLSDDNNNSSFQSGDDAFASQTSVYGEYADGGSDGPI 67
           DS P+   ++S    A+ + S+V +S+ +  S F      F+S+     +   GGS+GP+
Sbjct: 34  DSPPMFS-SYSTGGGADDVFSSVPVSE-SPPSVFSVSGGGFSSE-----QNGQGGSNGPM 86

Query: 68  LPPPSDMVPEE--GFALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRKSIVT 125
           LP P  M  EE  GFALREWRR+NAIRL+EKEKKE +ML++II+EA+++K EFYRK  +T
Sbjct: 87  LPLPDGMQAEEEEGFALREWRRQNAIRLKEKEKKENQMLHKIIQEADDFKTEFYRKRHLT 146

Query: 126 RENNKASNREREKV 139
            EN KASN E+EK+
Sbjct: 147 IENKKASNGEKEKL 160

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460303|ref|XP_004147885.1| PREDICTED: clathrin light chain 3-like [Cucumis sativus]

 Score =  109 bits (272), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 58/104 (55%), Positives = 78/104 (75%), Gaps = 5/104 (4%)

Query: 38  NSSFQSGDDAFASQTSVYGEYADGG---SDGPILPPPSDMVPEEGFALREWRRENAIRLE 94
           N S   G  +F+SQ +  G+  DGG   SDGPIL  P+ M PEEGF LREWRR NAIRLE
Sbjct: 64  NFSAGGGFSSFSSQQN--GKGFDGGFGESDGPILSSPTAMEPEEGFPLREWRRLNAIRLE 121

Query: 95  EKEKKEKEMLNQIIEEAEEYKLEFYRKSIVTRENNKASNREREK 138
           EKEK+E E+L +II+EA++YK+EFYR+  +  +++KA+NR++EK
Sbjct: 122 EKEKREMELLEEIIDEADQYKIEFYRRRKLALDHSKATNRDKEK 165

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	197
TAIR|locus:2061196	258	CLC2 "clathrin light chain 2"	0.639	0.488	0.510	1.8e-25
TAIR|locus:2074378	258	CLC3 "clathrin light chain 3"	0.395	0.302	0.594	5.8e-18
TAIR|locus:2051472	338	AT2G20760 [Arabidopsis thalian	0.609	0.355	0.436	1.2e-15

TAIR|locus:2061196 CLC2 "clathrin light chain 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
 Identities = 73/143 (51%), Positives = 93/143 (65%)

Query:     5 DSVDSVPVAEYTHSFDDTAEQLNSAVDLSDDNNNSSFQSGDDAFASQTSVYGEYADG--- 61
             D+ +SVPV+    SFD T     SA D S    +S     DD FA+ +S YG Y++G   
Sbjct:    15 DASESVPVSG---SFDATDSF--SAFDGSLQVEDSV----DDVFAAPSSDYGAYSNGDGI 65

Query:    62 -GS----DGPILPPPSDMVPEEGFALREWRRENAIRLXXXXXXXXXMLNQIIEEAEEYKL 116
              GS    DGPILPPPS+M  +EGFALREWRR+NAI+L         +L QIIEEA++YK 
Sbjct:    66 FGSNGDHDGPILPPPSEMESDEGFALREWRRQNAIQLEEKEKREKELLKQIIEEADQYKE 125

Query:   117 EFYRKSIVTRENNKASNREREKV 139
             EF++K  VT ENNKA+NRE+EK+
Sbjct:   126 EFHKKIEVTCENNKAANREKEKL 148

GO:0005198 "structural molecule activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030130 "clathrin coat of trans-Golgi network vesicle" evidence=IEA

GO:0030132 "clathrin coat of coated pit" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009504 "cell plate" evidence=IDA

TAIR|locus:2074378 CLC3 "clathrin light chain 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
 Identities = 47/79 (59%), Positives = 53/79 (67%)

Query:    60 DGGSDGPILPPPSDMVPEEGFALREWRRENAIRLXXXXXXXXXMLNQIIEEAEEYKLEFY 119
             D  +D  ILPPPS M  EEGFALREWRR NA+RL         M+ QI+E AE+YK EFY
Sbjct:    79 DDTNDS-ILPPPSAMEKEEGFALREWRRLNALRLEEKEKEEKEMVQQILEAAEQYKAEFY 137

Query:   120 RKSIVTRENNKASNREREK 138
              K  VT ENNK  NRE+EK
Sbjct:   138 SKRNVTIENNKKLNREKEK 156

GO:0005198 "structural molecule activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030130 "clathrin coat of trans-Golgi network vesicle" evidence=IEA

GO:0030132 "clathrin coat of coated pit" evidence=IEA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

TAIR|locus:2051472 AT2G20760 [Arabidopsis thaliana (taxid:3702)]

 Score = 199 (75.1 bits), Expect = 1.2e-15, P = 1.2e-15
 Identities = 55/126 (43%), Positives = 68/126 (53%)

Query:    18 SFD-DTAEQLNSAVDLSDDNNN--SSFQSG-DDAFASQTSVYGEYADGGSDGPILPPPSD 73
             SF+ D A         S  N++  S F+S  +DA  +     G+ A   SDGPILP P++
Sbjct:    45 SFNGDPASPNGYGFGASSPNHDFSSPFESSVNDANGNGGGSGGD-AIFASDGPILPDPNE 103

Query:    74 MVPEEGFALREWRRENAIRLXXXXXXXXXMLNQIIEEAEEYKLEFYRKSIVTRENNKASN 133
             M  EEGF  REWRR N I L         M NQII EAE++K  FY K   T E NK  N
Sbjct:   104 M-REEGFQRREWRRLNTIHLEEKEKKEKEMRNQIITEAEDFKKAFYEKRDKTIETNKTDN 162

Query:   134 REREKV 139
             RE+EK+
Sbjct:   163 REKEKL 168


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.136   0.398    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      197       188   0.00087  110 3  11 22  0.42    32
                                                     31  0.42    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  593 (63 KB)
  Total size of DFA:  159 KB (2095 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.89u 0.13s 20.02t   Elapsed:  00:00:01
  Total cpu time:  19.89u 0.13s 20.02t   Elapsed:  00:00:01
  Start:  Fri May 10 11:31:15 2013   End:  Fri May 10 11:31:16 2013

GO:0005198 "structural molecule activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0007033 "vacuole organization" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	197
pfam01086	225	pfam01086, Clathrin_lg_ch, Clathrin light chain	2e-08

>gnl|CDD|216292 pfam01086, Clathrin_lg_ch, Clathrin light chain

 Score = 51.7 bits (124), Expect = 2e-08
 Identities = 28/119 (23%), Positives = 52/119 (43%), Gaps = 4/119 (3%)

Query: 20  DDTAEQLNSAVDLSDDNNNSSFQSGDDAFASQTSVYGEYADGGSDGPILPPPSDMVPEEG 79
           DD   +  S+    D  N +    G          Y E  D  S    +     +  EE 
Sbjct: 56  DDEISEFESSFPDVDTANEAVAPGGTIN----GDGYQEPDDPTSGYASISQADRVEGEEP 111

Query: 80  FALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRKSIVTRENNKASNREREK 138
            ++R+WR    +R+EE+++  ++   ++IE+A++   +FY      +E  KA NR+  +
Sbjct: 112 ESIRKWRERRDLRIEERDEASEKKKEELIEKAQKEIDDFYENYNEKKEKTKAQNRKEAE 170

Length = 225

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	197
PF01086	225	Clathrin_lg_ch: Clathrin light chain; InterPro: IP	99.49
KOG4031	216	consensus Vesicle coat protein clathrin, light cha	98.42

>PF01086 Clathrin_lg_ch: Clathrin light chain; InterPro: IPR000996 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.49  E-value=4.3e-14  Score=117.60  Aligned_cols=73  Identities=37%  Similarity=0.507  Sum_probs=58.1

Q ss_pred             CCCCCCCcchhhHhHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhchhhhhhhhc
Q 029231           69 PPPSDMVPEEGFALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRKSIVTRENNKASNREREKVSG  141 (197)
Q Consensus        69 PpP~eM~~EEG~~LREWRRQNAi~LEEKEk~EKE~r~QII~EAeeyK~eFYeKR~~n~EtnKa~NREKEKly~  141 (197)
                      |++..+..|+..++|+||+++..+|++|+++|++++.+|+++|.+|+..||+.|+..+|++|++||+.|+.+.
T Consensus       101 ~~~~~~~~E~~e~ireWre~~~~~i~ekD~~e~~kk~e~~~~A~k~lddfY~~~~~k~e~~k~~nr~~ee~fl  173 (225)
T PF01086_consen  101 SPAPPVEEEEPEAIREWREERDKRIEEKDAEEEEKKEEIKEKAKKELDDFYENRNEKKEKNKKQNREEEEEFL  173 (225)
T ss_dssp             ---STTTTS-TTHHHHHHHHHTTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--------
T ss_pred             CccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555999999999999999999999999999999999999999999999999999999999998654

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents clathrin light chains, which are more divergent in sequence than the heavy chains []. In higher eukaryotes, two genes encode distinct but related light chains, each of which can yield two separate forms via alternative splicing. In yeast there is a single light chain whose sequence is only distantly related to that of higher eukaryotes. Clathrin light chains have a conserved acidic N-terminal domain, a central coiled-coil domain and a conserved C-terminal domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030130 clathrin coat of trans-Golgi network vesicle, 0030132 clathrin coat of coated pit; PDB: 3LVG_E 3LVH_D.

>KOG4031 consensus Vesicle coat protein clathrin, light chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.42  E-value=3.2e-06  Score=73.11  Aligned_cols=82  Identities=26%  Similarity=0.427  Sum_probs=68.9

Q ss_pred             CCCCCCCCCCCC--CCCCCCCCCcchhhHhHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhc
Q 029231           55 YGEYADGGSDGP--ILPPPSDMVPEEGFALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRKSIVTRENNKAS  132 (197)
Q Consensus        55 f~p~~ng~sdGP--iLPpP~eM~~EEG~~LREWRRQNAi~LEEKEk~EKE~r~QII~EAeeyK~eFYeKR~~n~EtnKa~  132 (197)
                      +.+..||..+|+  |.++|.  ..+|-...|.||-+-+.+|+||...++.++...++.|......||+.+.-+++.+|++
T Consensus        81 ~f~~~nG~~d~~a~is~~~~--~~~epE~IRkWkeeQ~~rl~ekD~~sek~k~ElrekAkKelddwy~~~~ek~~k~~~~  158 (216)
T KOG4031|consen   81 VFQEDNGPADGYAGISQGPR--LRDEPEKIRKWKEEQMKRLQEKDEASEKLKEELREKAKKELDDWYDQQNEKLEKTKAN  158 (216)
T ss_pred             ccccCCCCcccccccCCCCC--cccChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            446667755555  445555  4478889999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhh
Q 029231          133 NREREK  138 (197)
Q Consensus       133 NREKEK  138 (197)
                      ||.-|.
T Consensus       159 nk~eee  164 (216)
T KOG4031|consen  159 NKAEEE  164 (216)
T ss_pred             hHHHHH
Confidence            975544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	197
3lvh_D	205	LCB, clathrin light chain B; SELF assembly, coated	5e-25
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	1e-24
1xi4_J	70	LCA, clathrin light chain A; alpha-ZIG-ZAG, beta-p	1e-09

>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 9.00A {Bos taurus} Length = 205

 Score = 95.8 bits (237), Expect = 5e-25
 Identities = 27/119 (22%), Positives = 53/119 (44%)

Query: 20  DDTAEQLNSAVDLSDDNNNSSFQSGDDAFASQTSVYGEYADGGSDGPILPPPSDMVPEEG 79
           +D      +           +  + +D  A+      + A+G +DG      +D + +E 
Sbjct: 40  NDEGFGAPAGSQGGLAQPGPASGASEDMGATVNGDVFQEANGPADGYAAIAQADRLTQEP 99

Query: 80  FALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRKSIVTRENNKASNREREK 138
            ++R+WR E   RL+E +   K M  +  E+A++   E+ ++     E NK +NR  +K
Sbjct: 100 ESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADK 158

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 94.5 bits (234), Expect = 1e-24
 Identities = 20/66 (30%), Positives = 36/66 (54%)

Query: 73  DMVPEEGFALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRKSIVTRENNKAS 132
           D + +E  ++R+WR E   RL+E +   K M  +  E+A++   E+ ++     E NK +
Sbjct: 78  DRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKIN 137

Query: 133 NREREK 138
           NR  +K
Sbjct: 138 NRIADK 143

>1xi4_J LCA, clathrin light chain A; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 3iyv_J Length = 70

 Score = 51.6 bits (123), Expect = 1e-09
 Identities = 17/66 (25%), Positives = 33/66 (50%)

Query: 73  DMVPEEGFALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRKSIVTRENNKAS 132
           D +  E  ++R+WR E   RLE  +   ++   +  E+A +   E+Y +     +  KA+
Sbjct: 2   DRLQSEPESIRKWREEQTERLEALDANSRKQEAEWKEKAIKELDEWYARQDEQLQKTKAN 61

Query: 133 NREREK 138
           NR  ++
Sbjct: 62  NRVADE 67

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	197
1xi4_J	70	LCA, clathrin light chain A; alpha-ZIG-ZAG, beta-p	99.35
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	99.27
3lvh_D	205	LCB, clathrin light chain B; SELF assembly, coated	98.92

>1xi4_J LCA, clathrin light chain A; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 3iyv_J

Probab=99.35  E-value=2.5e-12  Score=92.58  Aligned_cols=69  Identities=23%  Similarity=0.297  Sum_probs=62.6

Q ss_pred             CCCCCCCcchhhHhHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhchhhhhhhh
Q 029231           69 PPPSDMVPEEGFALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRKSIVTRENNKASNREREKVS  140 (197)
Q Consensus        69 PpP~eM~~EEG~~LREWRRQNAi~LEEKEk~EKE~r~QII~EAeeyK~eFYeKR~~n~EtnKa~NREKEKly  140 (197)
                      |||.++++   ..+|+||.++..+|++|+..+++++..+++.|..++..||+.+....+.+|++||..++-|
T Consensus         1 ~~~~~~Ep---E~Ir~WRE~~~~~i~erd~~~~~~k~e~~~~A~k~iddfY~~yn~k~ek~~~~nR~~~e~F   69 (70)
T 1xi4_J            1 VDRLQSEP---ESIRKWREEQTERLEALDANSRKQEAEWKEKAIKELDEWYARQDEQLQKTKANNRVADEAF   69 (70)
T ss_pred             CCCcccCc---HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            46666554   4999999999999999999999999999999999999999999999999999999887543

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus}

Probab=99.27  E-value=7.1e-13  Score=110.67  Aligned_cols=90  Identities=22%  Similarity=0.253  Sum_probs=83.7

Q ss_pred             cCCCCCCCCCCCCCCCCCCCCCcchhhHhHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhch
Q 029231           54 VYGEYADGGSDGPILPPPSDMVPEEGFALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRKSIVTRENNKASN  133 (197)
Q Consensus        54 ~f~p~~ng~sdGPiLPpP~eM~~EEG~~LREWRRQNAi~LEEKEk~EKE~r~QII~EAeeyK~eFYeKR~~n~EtnKa~N  133 (197)
                      .+.+++||.+||+..+++.++..+|...+|+||.+...+|++|+..+++++..+++.|.+-..+||+.+...+|.+|++|
T Consensus        59 d~~qEsNGpsD~yaAIaqad~LeEEPEsIRKWREEQkkRLEeRDA~SekkKeEwrEKAKKELDDWYenYNEQ~EKnKa~N  138 (190)
T 3lvg_D           59 XXXXXXXXXXXXXXXIAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINN  138 (190)
T ss_dssp             CCCCCHHHHHHHHHHHCCCSTTTTSTTHHHHHHHHHTTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ccccccccccccccccCcccccccCchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            35688889999999988888877999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhchh
Q 029231          134 REREKVSGDF  143 (197)
Q Consensus       134 REKEKly~~~  143 (197)
                      |+.|+-+.+=
T Consensus       139 R~aEEeFLaq  148 (190)
T 3lvg_D          139 RIADKAFYQQ  148 (190)
T ss_dssp             CSSTTTSSHH
T ss_pred             HHHHHHHHhC
Confidence            9999988653

>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 9.00A {Bos taurus}

Probab=98.92  E-value=1.6e-09  Score=91.37  Aligned_cols=86  Identities=27%  Similarity=0.333  Sum_probs=66.2

Q ss_pred             CCCCCCCCCCCC-CCCCCCCcchhhHhHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhchhh
Q 029231           57 EYADGGSDGPIL-PPPSDMVPEEGFALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRKSIVTRENNKASNRE  135 (197)
Q Consensus        57 p~~ng~sdGPiL-PpP~eM~~EEG~~LREWRRQNAi~LEEKEk~EKE~r~QII~EAeeyK~eFYeKR~~n~EtnKa~NRE  135 (197)
                      -++||.+|+..- ..+...+ +|-..+|+||.+...+|++|+..+++++..+++.|.+-+.+||+.+...++.+|++||.
T Consensus        77 qesngp~d~yaai~qad~le-eEPEsIRkWREEq~kRLeekDa~sekkk~E~rekAkKeLddwY~~yneqlEK~ka~NR~  155 (205)
T 3lvh_D           77 QEANGPADGYAAIAQADRLT-QEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRI  155 (205)
T ss_dssp             --------------CCSTTT-BSTTHHHHHHHHHTTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred             hhcCCCccchhhhccccccc-cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            456665555332 2233333 88899999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhchh
Q 029231          136 REKVSGDF  143 (197)
Q Consensus       136 KEKly~~~  143 (197)
                      .|+-+.+=
T Consensus       156 aeeeFlaq  163 (205)
T 3lvh_D          156 ADKAFYQQ  163 (205)
T ss_dssp             STTTSSHH
T ss_pred             HHHHHHhC
Confidence            99987653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00