Citrus Sinensis ID: 029233

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------
Protein Sequence
MCIYDASCDTHFGFCCNVDEETSRELARLPGVLTVRPDPDYNSVKKDYSCLDIQMSNPWNSQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTGVPGVLSVQPDENFGSENKDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVTGIQWTQ
Secondary Structure (PSIPRED)
ccEEEEEccccEEEEEEEcHHHHHHHcccccEEEEcccccccccccccccccccccccccccccccccccccccEEEEEEEEccccccccHHHHHHHHHHHHHHHHccHHHHHHHHEEEEEEEEEEEEEEEcHHHHHHHccccccEEEcccccccccccccccccccccccccccccccccccccccEEEEEccccc
Secondary Structure Prediction (SSPRO)
cEEEEEccccccccEccccHHHHHHHcccccEEEEEcccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHEcccccccEEEEEcHHHHHHHcccccEEEEEccccccccccccccccccccEEccccccccccccccccEEEEEccccc
Coil and Loop (DISEMBL)
mciydascdthfgfccnvdeETSRELArlpgvltvrpdpdynsvkkdyscldiqmsnpwnsqigttllfplgttkhwlvrmdkpgvgvvtKAQMVDRYAQILTKVLGNEKDAQMCIYHVSwqsnfgfccelDDECAQeltgvpgvlsvqpdenfgsenkdyggnnlqnsmvpsdsseasptqiktKKLFVTGIQWTQ
Flexible Loop (DISEMBL)
mciydascdthFGFCCNVDEETSRELarlpgvltvrpdpdynsVKKDYSCLDIQMSNPWNSQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTGVPGVLSVQPDENFGSENKDYGGNNLQNSMVPsdsseasptqiktkklfvtgiqwtq
Low Complexity Region (SEG)
MCIYDASCDTHFGFCCNVDEETSRELARLPGVLTVRPDPDYNSVKKDYSCLDIQMSNPWNSQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTGVPGVLSVQPDENFGSENKDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVTGIQWTQ
Disordered region (IsUnstruct)
*CIYDASCDTHFGFCCNVDEETSRELARLPGVLTVRPDPDYNSVKKDYSCLDIQMSNPWNSQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTGVPGVL*****************************************LFVTGI****
Disordered Region (DISOPRED)
*CIYDASCDTHFGFCCNVDEE*******************************************TTLLFPLGTTKHWLVRMDKPG***VTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDEC****TGVPGVLSVQPDENFGSENKDYGGNNLQNSM******************FVTGIQWT*
Disordered Region (DISEMBL)
MCIYDASCDTHFGFCCNVDEETSRELARLPGVLTVRPDPDYNSVKKDYSCLDIQMSNPWNSQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTGVPGVLSVQPDENFGSENKDYGGNNLQNS************QIKTKKLFVTGIQWTQ
Disordered Region (DISPRO)
MCIYDASCDTHFGFCCNVDEETSRELARLPGVLTVRPDP***********************IGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTGVPGVLSVQPDENFGSENKDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVTGIQWTQ
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MCIYDASCDTHFGFCCNVDEETSRELARLPGVLTVRPDPDYNSVKKDYSCLDIQMSNPWNSQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTGVPGVLSVQPDENFGSENKDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVTGIQWTQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	197	2.2.26 [Sep-21-2011]
Q38732	230	DAG protein, chloroplasti	N/A	no	0.619	0.530	0.341	7e-15
Q9LKA5	395	Uncharacterized protein A	no	no	0.446	0.222	0.337	1e-08

>sp|Q38732|DAG_ANTMA DAG protein, chloroplastic OS=Antirrhinum majus GN=DAG PE=2 SV=1

 Score = 80.5 bits (197), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 42/123 (34%), Positives = 66/123 (53%), Gaps = 1/123 (0%)

Query: 66  TLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNF 125
           T++ P     HWL+ M+ P     T+ QM+D Y   L  VLG+ ++A+  +Y  S  +  
Sbjct: 78  TIMLPGCDYNHWLIVMEFPKDPAPTREQMIDTYLNTLATVLGSMEEAKKNMYAFSTTTYT 137

Query: 126 GFCCELDDECAQELTGVPGVLSVQPDENFGSENKDYGGNNLQN-SMVPSDSSEASPTQIK 184
           GF C + +E +++  G+PGVL V PD     +NKDYGG+   N  ++P       P Q +
Sbjct: 138 GFQCTVTEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYVNGEIIPCQYPTYQPKQSR 197

Query: 185 TKK 187
           + K
Sbjct: 198 SSK 200

Acts very early in chloroplast development, being required for expression of RNA polymerase beta subunit gene, and hence indirectly for subsequent expression of CAB and RBCS genes.
Antirrhinum majus (taxid: 4151)

>sp|Q9LKA5|UMP1_ARATH Uncharacterized protein At3g15000, mitochondrial OS=Arabidopsis thaliana GN=At3g15000 PE=1 SV=1

 Score = 60.1 bits (144), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 52/89 (58%), Gaps = 1/89 (1%)

Query: 75  KHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDE 134
           +HWLV ++ P  G  T+ +++D Y + L +++G+E +A+M IY VS +  + F   + ++
Sbjct: 98  EHWLVVVEPP-QGEPTRDEIIDSYIKTLAQIVGSEDEARMKIYSVSTRCYYAFGALVSED 156

Query: 135 CAQELTGVPGVLSVQPDENFGSENKDYGG 163
            + +L  +  V  V PD      NKDYGG
Sbjct: 157 LSHKLKELSNVRWVLPDSYLDVRNKDYGG 185

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	197
224110196	311	predicted protein [Populus trichocarpa]	0.984	0.623	0.75	7e-82
224097630	333	predicted protein [Populus trichocarpa]	0.954	0.564	0.740	3e-79
225464121	409	PREDICTED: uncharacterized protein LOC10	0.989	0.476	0.719	9e-79
296087958	315	unnamed protein product [Vitis vinifera]	0.989	0.619	0.719	3e-78
147867424	408	hypothetical protein VITISV_001132 [Viti	0.989	0.477	0.591	5e-73
449525960	394	PREDICTED: uncharacterized LOC101208465	0.989	0.494	0.653	8e-72
449446458	394	PREDICTED: uncharacterized protein LOC10	0.989	0.494	0.658	1e-71
255568010	371	RNA binding protein, putative [Ricinus c	0.822	0.436	0.773	4e-70
356576299	386	PREDICTED: uncharacterized protein LOC10	0.969	0.494	0.663	2e-68
9293999	396	unnamed protein product [Arabidopsis tha	0.923	0.459	0.594	2e-60

>gi|224110196|ref|XP_002315444.1| predicted protein [Populus trichocarpa] gi|222864484|gb|EEF01615.1| predicted protein [Populus trichocarpa]

 Score =  308 bits (790), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 147/196 (75%), Positives = 168/196 (85%), Gaps = 2/196 (1%)

Query: 1   MCIYDASCDTHFGFCCNVDEETSRELARLPGVLTVRPDPDYNSVKKDYSCLDIQMSNPWN 60
           MCIYDA  DTHFGFCC++DE+ S ELARLPGVL+VRPDPDYNSV+KDYS   +++S   N
Sbjct: 34  MCIYDACYDTHFGFCCDIDEDASLELARLPGVLSVRPDPDYNSVEKDYSS-GVKLSTLSN 92

Query: 61  SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVS 120
            QIG+ LLFP G TKHWLVR+DKPGVGVVTKAQMVD YAQILTKV+G EKDAQMCIYHVS
Sbjct: 93  PQIGSKLLFPSGNTKHWLVRIDKPGVGVVTKAQMVDYYAQILTKVMGYEKDAQMCIYHVS 152

Query: 121 WQSNFGFCCELDDECAQELTGVPGVLSVQPDENFGSENKDYGGNNLQNSMVPSDSSEASP 180
           WQSNFGFCCELD+ECAQEL GVPGVLSV PD++F SENKDY G++L NS  P DSSEAS 
Sbjct: 153 WQSNFGFCCELDEECAQELAGVPGVLSVLPDKDFESENKDYRGDSLINSANPPDSSEASQ 212

Query: 181 -TQIKTKKLFVTGIQW 195
            T ++TKKLF+TG+ +
Sbjct: 213 ITHVRTKKLFITGLSF 228

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224097630|ref|XP_002311019.1| predicted protein [Populus trichocarpa] gi|222850839|gb|EEE88386.1| predicted protein [Populus trichocarpa]

 Score =  300 bits (767), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 143/193 (74%), Positives = 166/193 (86%), Gaps = 5/193 (2%)

Query: 1   MCIYDASCDTHFGFCCNVDEETSRELARLPGVLTVRPDPDYNSVKKDYSCLDIQMSNPWN 60
           MC+YD+SCDT FGFCC++DE+ S ELARLPGV++VRPDPDYNS +KDYS L  ++S   N
Sbjct: 83  MCMYDSSCDTRFGFCCDIDEDASLELARLPGVISVRPDPDYNSAEKDYS-LGFRLSTLSN 141

Query: 61  SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVS 120
            QIG+ LLFP G TKHWLV++DKP VGVVTKAQMVD +AQILTKV+GNEKDAQMCIYHVS
Sbjct: 142 PQIGSNLLFPAGNTKHWLVKIDKPAVGVVTKAQMVDYHAQILTKVMGNEKDAQMCIYHVS 201

Query: 121 WQSNFGFCCELDDECAQELTGVPGVLSVQPDENFGSENKDYGGNNLQNSMVPSDSSEASP 180
           WQSNFGFCCELD+ECAQEL GVPGVLSVQPD+N  SENKDYGG+++ NS   +DSSEAS 
Sbjct: 202 WQSNFGFCCELDEECAQELAGVPGVLSVQPDKNDESENKDYGGDHIINS---ADSSEASQ 258

Query: 181 TQ-IKTKKLFVTG 192
           T  +KTKKLF+T 
Sbjct: 259 TTPVKTKKLFITA 271

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225464121|ref|XP_002264164.1| PREDICTED: uncharacterized protein LOC100265361 [Vitis vinifera]

 Score =  298 bits (762), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 141/196 (71%), Positives = 166/196 (84%), Gaps = 1/196 (0%)

Query: 1   MCIYDASCDTHFGFCCNVDEETSRELARLPGVLTVRPDPDYNSVKKDYSCLDIQMSNPWN 60
           MCIYDAS D  FGFCC++D ETSREL+ L GVL+V+PDP++NSVKKDY+  +IQ+ +  N
Sbjct: 131 MCIYDASWDAPFGFCCDIDAETSRELSGLQGVLSVKPDPNFNSVKKDYTFSNIQLGSVSN 190

Query: 61  SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVS 120
           S IG+  LFP G +K+WLV+MD+P VGVVTKAQMVD YAQILTKVLGNEKDAQMCIYH+S
Sbjct: 191 SDIGSPQLFPAGNSKYWLVQMDRPTVGVVTKAQMVDFYAQILTKVLGNEKDAQMCIYHIS 250

Query: 121 WQSNFGFCCELDDECAQELTGVPGVLSVQPDENFGSENKDYGGNNLQNSMVPSDSSEAS- 179
           WQS+FGFCCELD+ECA+EL GVPGVLSV+PDENF S NKDYGG +LQNS    DS EA+ 
Sbjct: 251 WQSDFGFCCELDEECARELAGVPGVLSVRPDENFESNNKDYGGGSLQNSTDSLDSMEANQ 310

Query: 180 PTQIKTKKLFVTGIQW 195
           PT IKTKKLFVTG+ +
Sbjct: 311 PTNIKTKKLFVTGLSF 326

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087958|emb|CBI35241.3| unnamed protein product [Vitis vinifera]

 Score =  296 bits (759), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 141/196 (71%), Positives = 166/196 (84%), Gaps = 1/196 (0%)

Query: 1   MCIYDASCDTHFGFCCNVDEETSRELARLPGVLTVRPDPDYNSVKKDYSCLDIQMSNPWN 60
           MCIYDAS D  FGFCC++D ETSREL+ L GVL+V+PDP++NSVKKDY+  +IQ+ +  N
Sbjct: 37  MCIYDASWDAPFGFCCDIDAETSRELSGLQGVLSVKPDPNFNSVKKDYTFSNIQLGSVSN 96

Query: 61  SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVS 120
           S IG+  LFP G +K+WLV+MD+P VGVVTKAQMVD YAQILTKVLGNEKDAQMCIYH+S
Sbjct: 97  SDIGSPQLFPAGNSKYWLVQMDRPTVGVVTKAQMVDFYAQILTKVLGNEKDAQMCIYHIS 156

Query: 121 WQSNFGFCCELDDECAQELTGVPGVLSVQPDENFGSENKDYGGNNLQNSMVPSDSSEAS- 179
           WQS+FGFCCELD+ECA+EL GVPGVLSV+PDENF S NKDYGG +LQNS    DS EA+ 
Sbjct: 157 WQSDFGFCCELDEECARELAGVPGVLSVRPDENFESNNKDYGGGSLQNSTDSLDSMEANQ 216

Query: 180 PTQIKTKKLFVTGIQW 195
           PT IKTKKLFVTG+ +
Sbjct: 217 PTNIKTKKLFVTGLSF 232

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147867424|emb|CAN83272.1| hypothetical protein VITISV_001132 [Vitis vinifera]

 Score =  279 bits (713), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 142/240 (59%), Positives = 165/240 (68%), Gaps = 45/240 (18%)

Query: 1   MCIYDASCDTHFGFCCNVDEETSRELARLPGVLTVRPDPDYNSVKKDYSCLDIQMSNPWN 60
           MCIYDAS D  FGFCC++D ETSREL+ L GVL+V+PDPD+NSVKKDY+  +IQ+ +  N
Sbjct: 86  MCIYDASWDAPFGFCCDIDAETSRELSGLQGVLSVKPDPDFNSVKKDYTFSNIQLGSVSN 145

Query: 61  SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVS 120
           S IG+  LFP G +KHWLV+MD+P VGVVTKAQMVD YAQILTKVLGNEKDAQMCIYH+S
Sbjct: 146 SDIGSPQLFPAGNSKHWLVQMDRPTVGVVTKAQMVDFYAQILTKVLGNEKDAQMCIYHIS 205

Query: 121 WQSNFGFCCELDDECAQELTGVPGVLSVQPDENFGSENKDYG------------------ 162
           WQS+FGFCCELD+ECA+EL GVPGVLSV+PDENF S NKDYG                  
Sbjct: 206 WQSDFGFCCELDEECARELAGVPGVLSVRPDENFESNNKDYGVLDIKWDDEQDSIKIRPL 265

Query: 163 --------------------------GNNLQNSMVPSDSSEAS-PTQIKTKKLFVTGIQW 195
                                     G +LQNS    DS EA+ PT IK KKLFVTG+ +
Sbjct: 266 VATVLDIADHLFYVVGMGLNKVEVVLGGSLQNSTDSLDSMEANQPTNIKXKKLFVTGLSF 325

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449525960|ref|XP_004169984.1| PREDICTED: uncharacterized LOC101208465 [Cucumis sativus]

 Score =  275 bits (703), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 128/196 (65%), Positives = 158/196 (80%), Gaps = 1/196 (0%)

Query: 1   MCIYDASCDTHFGFCCNVDEETSRELARLPGVLTVRPDPDYNSVKKDYSCLDIQMSNPWN 60
           MCIYDAS DT FGFCC++DE+ S ELAR+PGV++V PDP+++S++KD       ++    
Sbjct: 120 MCIYDASWDTRFGFCCDIDEQASIELARVPGVISVEPDPNFSSIEKDNGSSTPPLNLKSY 179

Query: 61  SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVS 120
           SQ G+ +LFPLG TKHWLVR+DKPG+GVVTKAQMVD Y +ILTKVLGN+KDAQMCIYHVS
Sbjct: 180 SQNGSRVLFPLGNTKHWLVRIDKPGIGVVTKAQMVDYYVEILTKVLGNDKDAQMCIYHVS 239

Query: 121 WQSNFGFCCELDDECAQELTGVPGVLSVQPDENFGSENKDYGGNNLQNSM-VPSDSSEAS 179
           WQS+FGFCCELD+ECA+EL GVPGVLSVQ D NF +ENKDYGGN  +N + +P  S    
Sbjct: 240 WQSSFGFCCELDEECARELAGVPGVLSVQLDANFEAENKDYGGNIAKNPLDLPDSSGTHQ 299

Query: 180 PTQIKTKKLFVTGIQW 195
            T +KTKKLF+TG+ +
Sbjct: 300 TTPVKTKKLFITGLSF 315

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446458|ref|XP_004140988.1| PREDICTED: uncharacterized protein LOC101208465 [Cucumis sativus]

 Score =  274 bits (701), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 129/196 (65%), Positives = 158/196 (80%), Gaps = 1/196 (0%)

Query: 1   MCIYDASCDTHFGFCCNVDEETSRELARLPGVLTVRPDPDYNSVKKDYSCLDIQMSNPWN 60
           MCIYDAS DT FGFCC++DE+ S ELAR+PGV++V PDP+++S++KD       ++    
Sbjct: 120 MCIYDASWDTRFGFCCDIDEQASIELARVPGVISVEPDPNFSSIEKDNGSSTPPLNLKSY 179

Query: 61  SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVS 120
           SQ G+ +LFPLG TKHWLVR+DKPG+GVVTKAQMVD Y +ILTKVLGN+KDAQMCIYHVS
Sbjct: 180 SQNGSRVLFPLGNTKHWLVRIDKPGIGVVTKAQMVDYYVEILTKVLGNDKDAQMCIYHVS 239

Query: 121 WQSNFGFCCELDDECAQELTGVPGVLSVQPDENFGSENKDYGGNNLQN-SMVPSDSSEAS 179
           WQS+FGFCCELD+ECA+EL GVPGVLSVQ D NF +ENKDYGGN  +N S +P  S    
Sbjct: 240 WQSSFGFCCELDEECARELAGVPGVLSVQLDANFEAENKDYGGNIAKNPSDLPDSSGTHQ 299

Query: 180 PTQIKTKKLFVTGIQW 195
            T +KTKKLF+TG+ +
Sbjct: 300 TTPVKTKKLFITGLSF 315

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255568010|ref|XP_002524982.1| RNA binding protein, putative [Ricinus communis] gi|223535726|gb|EEF37389.1| RNA binding protein, putative [Ricinus communis]

 Score =  269 bits (688), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 126/163 (77%), Positives = 140/163 (85%), Gaps = 1/163 (0%)

Query: 1   MCIYDASCDTHFGFCCNVDEETSRELARLPGVLTVRPDPDYNSVKKDYSCLDIQMSNPWN 60
           +CIYDASCDTHFGFCC++DE TS ELA LPGVL+VRPDPDYNS KKDYS  ++   N  N
Sbjct: 124 LCIYDASCDTHFGFCCDIDETTSLELASLPGVLSVRPDPDYNSEKKDYSP-NVGFGNLSN 182

Query: 61  SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVS 120
            QIG+T LF  G T+HWLVRM+KPGVGVVTKAQMVD YA+IL KVLGN+KDAQMCIYHVS
Sbjct: 183 LQIGSTPLFLSGNTRHWLVRMNKPGVGVVTKAQMVDYYAEILAKVLGNQKDAQMCIYHVS 242

Query: 121 WQSNFGFCCELDDECAQELTGVPGVLSVQPDENFGSENKDYGG 163
           W+ NFGFCCELD+ECAQEL GVPGVLSVQ D+NF SENKDY G
Sbjct: 243 WRPNFGFCCELDEECAQELAGVPGVLSVQLDKNFESENKDYEG 285

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576299|ref|XP_003556270.1| PREDICTED: uncharacterized protein LOC100791652 [Glycine max]

 Score =  264 bits (674), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 130/196 (66%), Positives = 154/196 (78%), Gaps = 5/196 (2%)

Query: 1   MCIYDASCDTHFGFCCNVDEETSRELARLPGVLTVRPDPDYNSVKKDYSCLDIQMSNPWN 60
           MCIYDAS +THFGFCC++DEE S +LA LP VL VRPD ++NS+KKDYS    +  +   
Sbjct: 115 MCIYDASWNTHFGFCCDIDEEISAQLASLPEVLLVRPDLEFNSLKKDYSLSSGEAGHLSG 174

Query: 61  SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVS 120
            +  T +LFP G +KHWLV+MDKPGV  VTKAQ+VD YAQILTKV+GNEKDAQMCIYHVS
Sbjct: 175 LRTRTNMLFPAGNSKHWLVKMDKPGVEAVTKAQIVDYYAQILTKVMGNEKDAQMCIYHVS 234

Query: 121 WQSNFGFCCELDDECAQELTGVPGVLSVQPDENFGSENKDYGGNNLQNSMVPSDSSEAS- 179
           W++NFGFCCELD++CAQEL GV GVLSVQPD NF SENKDY     +NS   S+SSEAS 
Sbjct: 235 WKTNFGFCCELDEDCAQELAGVLGVLSVQPDNNFESENKDYA----ENSWNVSNSSEASQ 290

Query: 180 PTQIKTKKLFVTGIQW 195
              +KTKKLFVTG+ +
Sbjct: 291 EAPLKTKKLFVTGLSF 306

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9293999|dbj|BAB01902.1| unnamed protein product [Arabidopsis thaliana]

 Score =  237 bits (604), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 116/195 (59%), Positives = 147/195 (75%), Gaps = 13/195 (6%)

Query: 1   MCIYDASCDTHFGFCCNVDEETSRELARLPGVLTVRPDPDYNSVKKDYSCLDIQMSNPWN 60
           + IYDAS DTHFGFCC++DE+ SR+LA LPGV+++RP+ DY+S KK+Y            
Sbjct: 110 VSIYDASFDTHFGFCCHIDEDASRQLASLPGVVSIRPEQDYSSEKKNYGI---------G 160

Query: 61  SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVS 120
           S  G +L F  GT KHW+VR+DKPGVG+VTKAQMVD   Q+L+KVL NEKDAQMC+YHVS
Sbjct: 161 SHKGVSL-FDHGTVKHWMVRIDKPGVGIVTKAQMVDHCVQLLSKVLWNEKDAQMCLYHVS 219

Query: 121 WQSNFGFCCELDDECAQELTGVPGVLSVQPDENFGSENKDYGGNNLQNSMVPSDSSEASP 180
           WQS+FGFCC+LD+  A EL GVPGVL+V PD +F S NKDY G++ Q+S    D SE+ P
Sbjct: 220 WQSDFGFCCDLDERSAVELAGVPGVLAVVPDNSFESLNKDYEGDSTQDSR-DQDDSESPP 278

Query: 181 TQIKTKKLFVTGIQW 195
             +KTKKLF+TG+ +
Sbjct: 279 --VKTKKLFITGLSF 291

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	197
TAIR|locus:2088756	374	AT3G20930 [Arabidopsis thalian	0.913	0.481	0.601	1.5e-58
TAIR|locus:2206639	229	AT1G32580 "AT1G32580" [Arabido	0.527	0.454	0.471	5.5e-22
TAIR|locus:2051003	219	DAL1 "differentiation and gree	0.558	0.502	0.472	1.5e-21
TAIR|locus:2063389	232	MORF6 "multiple organellar RNA	0.532	0.452	0.462	4.4e-20
TAIR|locus:2200131	232	MORF9 "multiple organellar RNA	0.710	0.603	0.342	6e-16
UNIPROTKB|Q2R8U1	374	Os11g0216400 "Os11g0216400 pro	0.527	0.278	0.314	8.4e-12
TAIR|locus:2083348	244	MORF3 "multiple organellar RNA	0.761	0.614	0.282	6.4e-11
TAIR|locus:2086310	395	RIP1 "RNA-editing factor inter	0.593	0.296	0.322	2e-10
TAIR|locus:2030200	192	AT1G72530 "AT1G72530" [Arabido	0.522	0.536	0.307	1.1e-07
TAIR|locus:2119782	419	MORF1 "multiple organellar RNA	0.583	0.274	0.270	1.5e-05

TAIR|locus:2088756 AT3G20930 [Arabidopsis thaliana (taxid:3702)]

 Score = 601 (216.6 bits), Expect = 1.5e-58, P = 1.5e-58
 Identities = 116/193 (60%), Positives = 146/193 (75%)

Query:     3 IYDASCDTHFGFCCNVDEETSRELARLPGVLTVRPDPDYNSVKKDYSCLDIQMSNPWNSQ 62
             IYDAS DTHFGFCC++DE+ SR+LA LPGV+++RP+ DY+S KK+Y            S 
Sbjct:   112 IYDASFDTHFGFCCHIDEDASRQLASLPGVVSIRPEQDYSSEKKNYGI---------GSH 162

Query:    63 IGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQ 122
              G +L F  GT KHW+VR+DKPGVG+VTKAQMVD   Q+L+KVL NEKDAQMC+YHVSWQ
Sbjct:   163 KGVSL-FDHGTVKHWMVRIDKPGVGIVTKAQMVDHCVQLLSKVLWNEKDAQMCLYHVSWQ 221

Query:   123 SNFGFCCELDDECAQELTGVPGVLSVQPDENFGSENKDYGGNNLQNSMVPSDSSEASPTQ 182
             S+FGFCC+LD+  A EL GVPGVL+V PD +F S NKDY G++ Q+S    D SE+ P  
Sbjct:   222 SDFGFCCDLDERSAVELAGVPGVLAVVPDNSFESLNKDYEGDSTQDSR-DQDDSESPP-- 278

Query:   183 IKTKKLFVTGIQW 195
             +KTKKLF+TG+ +
Sbjct:   279 VKTKKLFITGLSF 291

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003723 "RNA binding" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

TAIR|locus:2206639 AT1G32580 "AT1G32580" [Arabidopsis thaliana (taxid:3702)]

 Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
 Identities = 49/104 (47%), Positives = 67/104 (64%)

Query:    68 LFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGF 127
             LFP    +HWL+ MDKPG    TK QM+D Y Q L K++G+E++A+  IY+VS +  FGF
Sbjct:    87 LFPGCDYEHWLIVMDKPGGENATKQQMIDCYVQTLAKIIGSEEEAKKKIYNVSCERYFGF 146

Query:   128 CCELDDECAQELTGVPGVLSVQPDENFGSENKDYGGNNLQNSMV 171
              CE+D+E + +L G+PGVL + PD     ENKDYG     N  +
Sbjct:   147 GCEIDEETSNKLEGLPGVLFILPDSYVDQENKDYGAELFVNGEI 190

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005739 "mitochondrion" evidence=IDA

TAIR|locus:2051003 DAL1 "differentiation and greening-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
 Identities = 52/110 (47%), Positives = 68/110 (61%)

Query:    68 LFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGF 127
             LFP    +HWL+ MDKPG    TK QM+D Y Q L KV+G+E++A+  IY+VS +   GF
Sbjct:    78 LFPGCDYEHWLIVMDKPGGEGATKQQMIDCYIQTLAKVVGSEEEAKKRIYNVSCERYLGF 137

Query:   128 CCELDDECAQELTGVPGVLSVQPDENFGSENKDYGGNNLQNSMVPSDSSE 177
              CE+D+E + +L G+PGVL V PD     ENKDYG     N  +   S E
Sbjct:   138 GCEIDEETSTKLEGLPGVLFVLPDSYVDPENKDYGAELFVNGEIVQRSPE 187

GO:0003674 "molecular_function" evidence=ND

GO:0002103 "endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)" evidence=IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0009657 "plastid organization" evidence=IMP

GO:0000478 "endonucleolytic cleavage involved in rRNA processing" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0006399 "tRNA metabolic process" evidence=RCA

GO:0009658 "chloroplast organization" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2063389 MORF6 "multiple organellar RNA editing factor 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
 Identities = 49/106 (46%), Positives = 67/106 (63%)

Query:    68 LFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGF 127
             LFP    +HWL+ M+KPG     K QM+D Y Q L K++G+E++A+  IY+VS +  FGF
Sbjct:    90 LFPGCDYEHWLIVMEKPGGENAQKQQMIDCYVQTLAKIVGSEEEARKKIYNVSCERYFGF 149

Query:   128 CCELDDECAQELTGVPGVLSVQPDENFGSENKDYGGNNLQNS-MVP 172
              CE+D+E + +L G+PGVL V PD     E KDYG     N  +VP
Sbjct:   150 GCEIDEETSNKLEGLPGVLFVLPDSYVDPEFKDYGAELFVNGEVVP 195

GO:0009507 "chloroplast" evidence=ISM

GO:0005739 "mitochondrion" evidence=IDA

TAIR|locus:2200131 MORF9 "multiple organellar RNA editing factor 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 199 (75.1 bits), Expect = 6.0e-16, P = 6.0e-16
 Identities = 50/146 (34%), Positives = 75/146 (51%)

Query:    43 SVKKDYSCLDIQMSNPWNSQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQIL 102
             +V  DYS    + SN  N Q   T++ P     HWL+ M+ P     ++ QM+D Y   L
Sbjct:    61 TVDSDYSS---KRSNS-NEQ-RETIMLPGCDYNHWLIVMEFPKDPAPSRDQMIDTYLNTL 115

Query:   103 TKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTGVPGVLSVQPDENFGSENKDYG 162
               VLG+ ++A+  +Y  S  +  GF C +D+E +++  G+PGVL V PD     +NKDYG
Sbjct:   116 ATVLGSMEEAKKNMYAFSTTTYTGFQCTIDEETSEKFKGLPGVLWVLPDSYIDVKNKDYG 175

Query:   163 GNNLQNS-MVPSDSSEASPTQIKTKK 187
             G+   N  ++P       P Q    K
Sbjct:   176 GDKYINGEIIPCTYPTYQPKQRNNTK 201

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:1900865 "chloroplast RNA modification" evidence=IMP

GO:0006364 "rRNA processing" evidence=RCA

GO:0006399 "tRNA metabolic process" evidence=RCA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=RCA

GO:0009658 "chloroplast organization" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0045036 "protein targeting to chloroplast" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

UNIPROTKB|Q2R8U1 Os11g0216400 "Os11g0216400 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 166 (63.5 bits), Expect = 8.4e-12, P = 8.4e-12
 Identities = 33/105 (31%), Positives = 60/105 (57%)

Query:    67 LLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFG 126
             +LF      HWL+ M+ P     T+ +M++ Y Q L KV+G+ ++A+  +Y  S  +  G
Sbjct:    84 ILFEGCDYNHWLITMEFPDPKP-TREEMIETYLQTLAKVVGSYEEAKKRMYAFSTTTYVG 142

Query:   127 FCCELDDECAQELTGVPGVLSVQPDENFGSENKDYGGNNLQNSMV 171
             F   + +E +++  G+PGV+ + PD     E K+YGG+  +N ++
Sbjct:   143 FQAVMTEEMSEKFRGLPGVVFILPDSYLYPETKEYGGDKYENGVI 187

GO:0004252 "serine-type endopeptidase activity" evidence=ISS

TAIR|locus:2083348 MORF3 "multiple organellar RNA editing factor 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 152 (58.6 bits), Expect = 6.4e-11, P = 6.4e-11
 Identities = 44/156 (28%), Positives = 78/156 (50%)

Query:    18 VDEETSRELARLPGVLTVRPDPDYNSVKKDYSCLDIQMSNPWNSQIGTTLLFPLGTTKHW 77
             +++ +S   +  P  ++ RP    +     YS L+    N  N     T+L      +HW
Sbjct:    42 IEKVSSSRTSLGPCYISTRPKTSGSG----YSPLNDPSPNWSNRPPKETILLDGCDYEHW 97

Query:    78 LVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQ 137
             L+ M+       T+ +M++ Y + LT VLG +++A+  IY V   +  GF   + +E + 
Sbjct:    98 LIVMEFTDPKP-TEEEMINSYVKTLTSVLGWQEEAKKKIYSVCTSTYTGFGALISEELSC 156

Query:   138 ELTGVPGVLSVQPDENFGSENKDYGGN-NLQNSMVP 172
             ++  +PGVL V PD      NKDYGG+  ++  ++P
Sbjct:   157 KVKALPGVLWVLPDSYLDVPNKDYGGDLYVEGKVIP 192

GO:0009507 "chloroplast" evidence=ISM

GO:0005739 "mitochondrion" evidence=IDA

GO:0050897 "cobalt ion binding" evidence=IDA

GO:1900864 "mitochondrial RNA modification" evidence=IMP

TAIR|locus:2086310 RIP1 "RNA-editing factor interacting protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 154 (59.3 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 39/121 (32%), Positives = 63/121 (52%)

Query:    57 NP-W-NSQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQM 114
             NP W N     T+L      +HWLV ++ P  G  T+ +++D Y + L +++G+E +A+M
Sbjct:    78 NPNWSNRPPKETILLDGCDFEHWLVVVEPPQ-GEPTRDEIIDSYIKTLAQIVGSEDEARM 136

Query:   115 CIYHVSWQSNFGFCCELDDECAQELTGVPGVLSVQPDENFGSENKDYGGNN-LQNSMVPS 173
              IY VS +  + F   + ++ + +L  +  V  V PD      NKDYGG   +    VP 
Sbjct:   137 KIYSVSTRCYYAFGALVSEDLSHKLKELSNVRWVLPDSYLDVRNKDYGGEPFIDGKAVPY 196

Query:   174 D 174
             D
Sbjct:   197 D 197

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0050897 "cobalt ion binding" evidence=IDA

GO:0009451 "RNA modification" evidence=IMP

GO:0016554 "cytidine to uridine editing" evidence=IMP

GO:0080156 "mitochondrial mRNA modification" evidence=IMP

TAIR|locus:2030200 AT1G72530 "AT1G72530" [Arabidopsis thaliana (taxid:3702)]

 Score = 130 (50.8 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 32/104 (30%), Positives = 49/104 (47%)

Query:    59 WNSQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYH 118
             W+  I    L      KHWLV M KP  G  T+  +V  + + L   LG+E++A+  IY 
Sbjct:    39 WSELIRVPSLVEGCDYKHWLVLM-KPPNGYPTRNHIVQSFVETLAMALGSEEEAKRSIYS 97

Query:   119 VSWQSNFGFCCELDDECAQELTGVPGVLSVQPDENFGSENKDYG 162
             VS +  + F C + +    ++  +P V  V PD      +  YG
Sbjct:    98 VSTKYYYAFGCRIHEPLTYKIRSLPDVKWVLPDSFIVDGDNRYG 141

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2119782 MORF1 "multiple organellar RNA editing factor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 123 (48.4 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 33/122 (27%), Positives = 60/122 (49%)

Query:    66 TLLFPLGTTKHWLVRMD-KPGVGVVTKAQMVDRYAQILTKVLG-NEKDAQMCIYHVSWQS 123
             T+LF      HWL+ MD        +  +MV  Y +   + LG + ++A+  +Y  S  +
Sbjct:    79 TVLFEGCDYNHWLITMDFSKEETPKSPEEMVAAYEETCAQGLGISVEEAKQRMYACSTTT 138

Query:   124 NFGFCCELDDECAQELTGVPGVLSVQPDENFGSENKDYGGNNLQNSMV-----PSDSSEA 178
               GF   + ++ +++   +PGV+ + PD     +NK+YGG+  +N ++     P  S  A
Sbjct:   139 YQGFQAIMTEQESEKFKDLPGVVFILPDSYIDPQNKEYGGDKYENGVITHRPPPIQSGRA 198

Query:   179 SP 180
              P
Sbjct:   199 RP 200

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:1900864 "mitochondrial RNA modification" evidence=IMP

GO:1900865 "chloroplast RNA modification" evidence=IMP

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	197
PF05922	82	Inhibitor_I9: Peptidase inhibitor I9; InterPro: IP	99.4
PF05922	82	Inhibitor_I9: Peptidase inhibitor I9; InterPro: IP	95.89

>PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively

Probab=99.40  E-value=3.9e-13  Score=95.32  Aligned_cols=77  Identities=18%  Similarity=0.242  Sum_probs=57.8

Q ss_pred             eEEEEecCCCCCCcchhhHHHHHHHHHHHHhCCc----hhcccceEEEeecceeeEEeEeCHHHHHHhcCCCCeEEEcCC
Q 029233           76 HWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNE----KDAQMCIYHVSWQSNFGFCCELDDECAQELTGVPGVLSVQPD  151 (197)
Q Consensus        76 ~YIV~M~~p~~~~~~~~~~~~sH~q~LasVLgS~----e~Ak~sI~ysYt~~f~GFAA~LTeeeA~kLs~lPGVVSVfPD  151 (197)
                      .|||.|+.+....    ...+.|.+|+++++.+.    ......++|.|...++||+|+|+++++++|+++|+|.+|.||
T Consensus         1 ~YIV~~k~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~Gfs~~l~~~~i~~L~~~p~V~~Ve~D   76 (82)
T PF05922_consen    1 RYIVVFKDDASAA----SSFSSHKSWQASILKSALKSASSINAKVLYSYDNAFNGFSAKLSEEEIEKLRKDPGVKSVEPD   76 (82)
T ss_dssp             EEEEEE-TTSTHH----CHHHHHHHHHH----HHHHTH-TTT-EEEEEESSTSSEEEEEE-HHHHHHHHTSTTEEEEEEE
T ss_pred             CEEEEECCCCCcc----hhHHHHHHHHHHHHhhhhhhhcccCCceEEEEeeeEEEEEEEeCHHHHHHHHcCCCeEEEEeC
Confidence            5999999875433    25778888888776542    234567999999999999999999999999999999999999


Q ss_pred             CCcCC
Q 029233          152 ENFGS  156 (197)
Q Consensus       152 ~~~~~  156 (197)
                      ..+++
T Consensus        77 ~~v~l   81 (82)
T PF05922_consen   77 QVVSL   81 (82)
T ss_dssp             CEEEE
T ss_pred             ceEec
Confidence            88754

In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P ....

>PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively

Probab=95.89  E-value=0.0085  Score=42.07  Aligned_cols=30  Identities=37%  Similarity=0.591  Sum_probs=26.8

Q ss_pred             eeeeEeeeChHhHHHhhcCCCeEEEccCCC
Q 029233           11 HFGFCCNVDEETSRELARLPGVLTVRPDPD   40 (197)
Q Consensus        11 ~~~f~c~i~ee~s~~l~~lpgv~~v~pd~~   40 (197)
                      --||-.+++++..++|+++|+|..|.||.-
T Consensus        49 ~~Gfs~~l~~~~i~~L~~~p~V~~Ve~D~~   78 (82)
T PF05922_consen   49 FNGFSAKLSEEEIEKLRKDPGVKSVEPDQV   78 (82)
T ss_dssp             SSEEEEEE-HHHHHHHHTSTTEEEEEEECE
T ss_pred             EEEEEEEeCHHHHHHHHcCCCeEEEEeCce
Confidence            569999999999999999999999999963

In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P ....

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	197
2w2n_P	114	Proprotein convertase subtilisin/kexin type 9; hyd	99.59
2qtw_A	124	Proprotein convertase subtilisin/kexin type 9 Pro;	99.18
3cnq_P	80	Subtilisin BPN'; uncleaved, proenzyme, substrate c	99.11
1v5i_B	76	POIA1, IA-1=serine proteinase inhibitor; protease-	98.46
2p4e_P	692	Proprotein convertase subtilisin/kexin type 9; pro	97.94
3t41_A	471	Epidermin leader peptide processing serine protea;	96.3
3afg_A	539	Subtilisin-like serine protease; propeptide, therm	96.22
3cnq_P	80	Subtilisin BPN'; uncleaved, proenzyme, substrate c	95.73
2z30_B	65	TK-subtilisin; thermococcus kodakaraensis, hydrola	95.56
2z2z_A	395	TK-subtilisin precursor; thermococcus kodakaraensi	94.59
2w2n_P	114	Proprotein convertase subtilisin/kexin type 9; hyd	94.57
2z30_B	65	TK-subtilisin; thermococcus kodakaraensis, hydrola	93.67
2qtw_A	124	Proprotein convertase subtilisin/kexin type 9 Pro;	93.08
1v5i_B	76	POIA1, IA-1=serine proteinase inhibitor; protease-	86.82

>2w2n_P Proprotein convertase subtilisin/kexin type 9; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2m_P 2w2o_P 2w2p_P 2w2q_P 2xtj_P

Probab=99.59  E-value=7e-16  Score=118.49  Aligned_cols=76  Identities=16%  Similarity=0.137  Sum_probs=64.7

Q ss_pred             eeEEEEecCCCCCCcchhhHHHHHHHHHHHHhCCchhcccceEEEeecceeeEEeEeCHHHHHHhcCCCCeEEEcCCCCc
Q 029233           75 KHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTGVPGVLSVQPDENF  154 (197)
Q Consensus        75 ~~YIV~M~~p~~~~~~~~~~~~sH~q~LasVLgS~e~Ak~sI~ysYt~~f~GFAA~LTeeeA~kLs~lPGVVSVfPD~~~  154 (197)
                      +.|||+|+....    + ..++.|++||++++++ +.+...|.|+|++.|+||+|+||++|+++|+++|+|++|+||+.+
T Consensus        38 ~~YIV~lk~~~~----~-~~~~~h~~~l~s~~~~-~~~~~~i~~sY~~~~~GFaa~Lt~~~~~~L~~~P~V~~VE~D~~v  111 (114)
T 2w2n_P           38 GTYVVVLKEETH----L-SQSERTARRLQAQAAR-RGYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSSV  111 (114)
T ss_dssp             EEEEEEECTTCC----H-HHHHHHHHHHHHHHHH-TTCCCEEEEEECSSSSEEEEECCGGGHHHHHTSTTEEEEEEEEEE
T ss_pred             CcEEEEECCCCC----H-HHHHHHHHHHHHHhhh-cccCCceEEEecccceEEEEEcCHHHHHHHHcCCCccEEEeCceE
Confidence            589999986442    2 2567999999999865 335668999999999999999999999999999999999999876


Q ss_pred             CC
Q 029233          155 GS  156 (197)
Q Consensus       155 ~~  156 (197)
                      +.
T Consensus       112 ~~  113 (114)
T 2w2n_P          112 FA  113 (114)
T ss_dssp             EE
T ss_pred             ec
Confidence            53

>2qtw_A Proprotein convertase subtilisin/kexin type 9 Pro; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_A 2pmw_A 3h42_A 3bps_P 3gcw_P 3gcx_P 3p5b_P 3p5c_P

Probab=99.18  E-value=2.1e-11  Score=95.30  Aligned_cols=75  Identities=16%  Similarity=0.123  Sum_probs=58.5

Q ss_pred             eeEEEEecCCCCCCcchhhHHHHHHHHHHHHhCCchhcccceEEEeecceeeEEeEeCHHHHHHhcCCCCeEEEcCCCCc
Q 029233           75 KHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTGVPGVLSVQPDENF  154 (197)
Q Consensus        75 ~~YIV~M~~p~~~~~~~~~~~~sH~q~LasVLgS~e~Ak~sI~ysYt~~f~GFAA~LTeeeA~kLs~lPGVVSVfPD~~~  154 (197)
                      ..|||.|.+....     ..++.|.+++.+++.. ......|.|+|++.|+||+|+|+++++++|+++|+|.+|.||..+
T Consensus        48 ~~YIV~~K~~~~~-----~~~~~~~~~l~~~~~~-r~~g~~i~~~Y~~~~~GFaa~l~~~~~~~L~~~p~V~~VE~D~~v  121 (124)
T 2qtw_A           48 GTYVVVLKEETHL-----SQSERTARRLQAQAAR-RGYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSSV  121 (124)
T ss_dssp             EEEEEEECTTCCH-----HHHHHHHHHHHHHHHH-TTCCCEEEEEECSSSCEEEEECCGGGHHHHHTSTTEEEEEEEEEE
T ss_pred             CCEEEEECCCCCH-----HHHHHHHHHHHHHHhh-cccCCceEEEecccceEEEEEcCHHHHHHHHcCCCCcEEEeCceE
Confidence            4799999865432     2456777777765311 001237999999999999999999999999999999999999876


Q ss_pred             C
Q 029233          155 G  155 (197)
Q Consensus       155 ~  155 (197)
                      +
T Consensus       122 ~  122 (124)
T 2qtw_A          122 F  122 (124)
T ss_dssp             E
T ss_pred             e
Confidence            5

>3cnq_P Subtilisin BPN'; uncleaved, proenzyme, substrate complex, hydrolase, metal- binding, protease, secreted, serine protease, sporulation; 1.71A {Bacillus amyloliquefaciens} PDB: 3bgo_P 3co0_P 1spb_P 1scj_B

Probab=99.11  E-value=1.5e-10  Score=82.18  Aligned_cols=68  Identities=13%  Similarity=0.123  Sum_probs=51.9

Q ss_pred             eeEEEEecCCCCCCcchhhHHHHHHHHHHHHhCCchhcccceEEEeecceeeEEeEeCHHHHHHhcCCCCeEEEcCCCCc
Q 029233           75 KHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTGVPGVLSVQPDENF  154 (197)
Q Consensus        75 ~~YIV~M~~p~~~~~~~~~~~~sH~q~LasVLgS~e~Ak~sI~ysYt~~f~GFAA~LTeeeA~kLs~lPGVVSVfPD~~~  154 (197)
                      +.|||.|.......    .   .|.+++ .-.      ..+|.|+|.+ |+||+|+|+++++++|+++|+|.+|.||..+
T Consensus         9 ~~YIV~~k~~~~~~----~---~~~~~~-~~~------g~~i~~~y~~-~~Gfaa~l~~~~~~~L~~~p~V~~Ve~D~~v   73 (80)
T 3cnq_P            9 KKYIVGFKQGFKSC----A---KKEDVI-SEK------GGKLQKCFKY-VDAASATLNEKAVEELKKDPSVAYVEEDKLY   73 (80)
T ss_dssp             CEEEEEECTTCCSH----H---HHHHHH-HTT------TCEEEEECSS-SSEEEEECCHHHHHHHHTCTTEEEEEECCEE
T ss_pred             CCEEEEECCCCChH----H---HHHHHH-HHc------CCcceEEEcc-cEEEEEEcCHHHHHHHHhCCCccEEEeCcEE
Confidence            58999998654322    1   122222 222      2479999998 9999999999999999999999999999887


Q ss_pred             CCC
Q 029233          155 GSE  157 (197)
Q Consensus       155 ~~~  157 (197)
                      ++.
T Consensus        74 ~~~   76 (80)
T 3cnq_P           74 RAL   76 (80)
T ss_dssp             EEC
T ss_pred             EEe
Confidence            653

>1v5i_B POIA1, IA-1=serine proteinase inhibitor; protease-inhibitor complex, subtilisin, hydrolase-Pro binding complex; 1.50A {Pleurotus ostreatus} SCOP: d.58.3.2 PDB: 1itp_A

Probab=98.46  E-value=4.9e-07  Score=64.30  Aligned_cols=69  Identities=14%  Similarity=0.143  Sum_probs=55.4

Q ss_pred             eeEEEEecCCCCCCcchhhHHHHHHHHHHHHhCCchhcccceEEEe-ecceeeEEeEeCHHHHHHhcCC--CCeEEEcCC
Q 029233           75 KHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVS-WQSNFGFCCELDDECAQELTGV--PGVLSVQPD  151 (197)
Q Consensus        75 ~~YIV~M~~p~~~~~~~~~~~~sH~q~LasVLgS~e~Ak~sI~ysY-t~~f~GFAA~LTeeeA~kLs~l--PGVVSVfPD  151 (197)
                      ..|||.|....     +...++.|.+|+...=|       .|-|.| ...++||+|.|++++++.|+..  |.|-.|=+|
T Consensus         3 ~sYIV~lk~~~-----~~~~~~~~~~~~~~~gg-------~i~~~y~~~~~~Gfa~~~~~~~l~~l~~~~~p~V~~VE~D   70 (76)
T 1v5i_B            3 GKFIVIFKNDV-----SEDKIRETKDEVIAEGG-------TITNEYNMPGMKGFAGELTPQSLTKFQGLQGDLIDSIEED   70 (76)
T ss_dssp             EEEEEEECTTC-----CHHHHHHHHHHHHHHTC-------CCCEEEEETTEEEEEEEECHHHHHHHHHTBTTTEEEEEEC
T ss_pred             ceEEEEECCCC-----CHHHHHHHHHHHHhhCC-------ceEEEEEcCceeEEEEEcCHHHHHHHHhcCCCCCcEEcCC
Confidence            57999996432     22367788888776532       478888 4889999999999999999999  889999999


Q ss_pred             CCcC
Q 029233          152 ENFG  155 (197)
Q Consensus       152 ~~~~  155 (197)
                      ...+
T Consensus        71 ~~v~   74 (76)
T 1v5i_B           71 HVAH   74 (76)
T ss_dssp             CEEE
T ss_pred             cEEe
Confidence            8764

>2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens}

Probab=97.94  E-value=7.2e-06  Score=79.66  Aligned_cols=76  Identities=16%  Similarity=0.133  Sum_probs=56.7

Q ss_pred             eEEEEecCCCCCCcchhhHHHHHHHHHHHHhCCchhcccceEEEeecceeeEEeEeCHHHHHHhcCCCCeEEEcCCCCcC
Q 029233           76 HWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTGVPGVLSVQPDENFG  155 (197)
Q Consensus        76 ~YIV~M~~p~~~~~~~~~~~~sH~q~LasVLgS~e~Ak~sI~ysYt~~f~GFAA~LTeeeA~kLs~lPGVVSVfPD~~~~  155 (197)
                      .|||.|.+....    + ..+.|+++|.+.+... ....+|.|+|.+.|+||+++|+++++++|+++|+|.+|.||..+.
T Consensus        77 ~YIV~lk~~~~~----~-~~~~~~~~l~a~~~~~-g~~~~v~~~y~~~~~Gfsv~l~~~~l~~L~~~P~V~~Vepd~~v~  150 (692)
T 2p4e_P           77 TYVVVLKEETHL----S-QSERTARRLQAQAARR-GYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSSVF  150 (692)
T ss_dssp             EEEEEECTTCCH----H-HHHHHHHHHHHHHHHT-TCCCEEEEEECSSSCEEEEECCGGGHHHHHTSTTEEEEEEEEEEE
T ss_pred             cEEEEECCCCCH----H-HHHHHHHHHHHHHhhc-ccccceeeEeeccccEEEEEeCHHHHHHHHcCCCceEEEeccccc
Confidence            899999864432    2 3455666665543110 012368999999999999999999999999999999999998765


Q ss_pred             CC
Q 029233          156 SE  157 (197)
Q Consensus       156 ~~  157 (197)
                      .+
T Consensus       151 ~~  152 (692)
T 2p4e_P          151 AQ  152 (692)
T ss_dssp             EC
T ss_pred             cC
Confidence            43

>3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A

Probab=96.30  E-value=0.0072  Score=54.28  Aligned_cols=74  Identities=7%  Similarity=0.037  Sum_probs=47.9

Q ss_pred             ccccccCCCceeEEEEecCCCCCCcchhhHHHHHHHHHHHHhCCchhcccceEEEeecceeeEEeEeCHHHHHHhcC-CC
Q 029233           65 TTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTG-VP  143 (197)
Q Consensus        65 ~~~l~~~~d~~~YIV~M~~p~~~~~~~~~~~~sH~q~LasVLgS~e~Ak~sI~ysYt~~f~GFAA~LTeeeA~kLs~-lP  143 (197)
                      +.+.+.+.+.+.|||.+....           .-.+++.       +..-+++|.| ..++||+++|+++++++|++ +|
T Consensus        35 ~~l~~~~~~~~~yiv~~~~~~-----------~~~~~~~-------~~g~~v~~~~-~~~~~~~~~~~~~~~~~L~~~~p   95 (471)
T 3t41_A           35 ENLYFQGSEELYYSVEYKNTA-----------TFNKLVK-------KKSLNVVYNI-PELHVAQIKMTKMHANALANYKN   95 (471)
T ss_dssp             --------CCEEEEEEESCHH-----------HHHHHHH-------HHTCEEEEEE-GGGTEEEEEECHHHHHHHHTCTT
T ss_pred             ccceecCCCceEEEEEcCCHH-----------HHHHHHH-------hCCCEEEEec-CCccEEEEEeCHHHHHHHHhcCC
Confidence            555677778888999554311           1112221       1223567777 45999999999999999999 99


Q ss_pred             CeEEEcCCCCcCCC
Q 029233          144 GVLSVQPDENFGSE  157 (197)
Q Consensus       144 GVVSVfPD~~~~~~  157 (197)
                      +|.+|.|+..+...
T Consensus        96 ~V~~v~~~~~~~~~  109 (471)
T 3t41_A           96 DIKYINATCSTCIT  109 (471)
T ss_dssp             TEEEEEECCSSCBC
T ss_pred             CCcEEEecceeccc
Confidence            99999999877664

>3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis}

Probab=96.22  E-value=0.0027  Score=59.22  Aligned_cols=43  Identities=12%  Similarity=-0.061  Sum_probs=38.0

Q ss_pred             ceEEEeecceeeEEeEeCHHHHHHh-----------cCCCCeEEEcCCCCcCCCC
Q 029233          115 CIYHVSWQSNFGFCCELDDECAQEL-----------TGVPGVLSVQPDENFGSEN  158 (197)
Q Consensus       115 sI~ysYt~~f~GFAA~LTeeeA~kL-----------s~lPGVVSVfPD~~~~~~~  158 (197)
                      ++.|.|. .++||+++|+++|+++|           +++|+|.+|.||..++...
T Consensus        61 ~v~~~~~-~~~g~~~~l~~~~~~~l~~~~~~~~~~~~~~~~V~~v~~d~~~~~~~  114 (539)
T 3afg_A           61 KIKYNYH-IIPALAVKIKVKDLLIIAGLMDTGYFGNAQLSGVQFIQEDYVVKVAV  114 (539)
T ss_dssp             EEEEECS-SSSEEEEEEEHHHHHHHTTCSCCC---CCCCTTEEEEEECCEEECC-
T ss_pred             eEEEEee-eeeEEEEEeCHHHHHHHHhhccccccccccCCCeeEEEecccccccC
Confidence            5788885 69999999999999999           8999999999998887643

>3cnq_P Subtilisin BPN'; uncleaved, proenzyme, substrate complex, hydrolase, metal- binding, protease, secreted, serine protease, sporulation; 1.71A {Bacillus amyloliquefaciens} PDB: 3bgo_P 3co0_P 1spb_P 1scj_B

Probab=95.73  E-value=0.0086  Score=41.74  Aligned_cols=30  Identities=23%  Similarity=0.215  Sum_probs=27.8

Q ss_pred             eeeeEeeeChHhHHHhhcCCCeEEEccCCC
Q 029233           11 HFGFCCNVDEETSRELARLPGVLTVRPDPD   40 (197)
Q Consensus        11 ~~~f~c~i~ee~s~~l~~lpgv~~v~pd~~   40 (197)
                      --||.+.++|+..++|+++|+|..|-||.-
T Consensus        43 ~~Gfaa~l~~~~~~~L~~~p~V~~Ve~D~~   72 (80)
T 3cnq_P           43 VDAASATLNEKAVEELKKDPSVAYVEEDKL   72 (80)
T ss_dssp             SSEEEEECCHHHHHHHHTCTTEEEEEECCE
T ss_pred             cEEEEEEcCHHHHHHHHhCCCccEEEeCcE
Confidence            458999999999999999999999999964

>2z30_B TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 2z2y_B 3a3p_B 2z56_B 2z58_B 2z57_B 3a3n_B 3a3o_B

Probab=95.56  E-value=0.01  Score=40.65  Aligned_cols=42  Identities=17%  Similarity=0.063  Sum_probs=37.0

Q ss_pred             cccceEEEeecceeeEEeEeCHHHHHHhcCCCCeEEEcCCCCc
Q 029233          112 AQMCIYHVSWQSNFGFCCELDDECAQELTGVPGVLSVQPDENF  154 (197)
Q Consensus       112 Ak~sI~ysYt~~f~GFAA~LTeeeA~kLs~lPGVVSVfPD~~~  154 (197)
                      .--+|+|.+. .+++++|.|+++.+++|++.|||..|-+|...
T Consensus        21 ~gG~i~~~~~-~I~a~~~~lp~~~~~~L~~~p~V~yVE~D~~v   62 (65)
T 2z30_B           21 IGGHIVYQFK-LIPAVVVDVPANAVGKLKKMPGVEKVEFDHQA   62 (65)
T ss_dssp             GTCEEEEECS-SSSEEEEEECGGGHHHHHTSTTEEEEEECCEE
T ss_pred             CCCEEEEEec-CCcEEEEEeCHHHHHHHhcCCCceEEecCcEE
Confidence            4457899874 69999999999999999999999999999765

>2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A

Probab=94.59  E-value=0.015  Score=51.52  Aligned_cols=42  Identities=17%  Similarity=0.041  Sum_probs=37.8

Q ss_pred             ceEEEeecceeeEEeEeCHHHHHHhcCCCCeEEEcCCCCcCCC
Q 029233          115 CIYHVSWQSNFGFCCELDDECAQELTGVPGVLSVQPDENFGSE  157 (197)
Q Consensus       115 sI~ysYt~~f~GFAA~LTeeeA~kLs~lPGVVSVfPD~~~~~~  157 (197)
                      ++++.|. .++||+++|+++++++|+++|+|.+|.||..+++.
T Consensus        25 ~v~~~~~-~~~~~~~~~~~~~~~~L~~~p~V~~v~~~~~~~~~   66 (395)
T 2z2z_A           25 HIVYQFK-LIPAVVVDVPANAVGKLKKMPGVEKVEFDHQAVLL   66 (395)
T ss_dssp             EEEEECS-SSSEEEEEEEGGGHHHHHTSTTEEEEEECCEEEEC
T ss_pred             EEEEEec-cCCEEEEEECHHHHHHHHcCCCceEEEEeeeeccc
Confidence            5788886 49999999999999999999999999999888654

>2w2n_P Proprotein convertase subtilisin/kexin type 9; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2m_P 2w2o_P 2w2p_P 2w2q_P 2xtj_P

Probab=94.57  E-value=0.02  Score=43.26  Aligned_cols=31  Identities=19%  Similarity=0.224  Sum_probs=27.9

Q ss_pred             ceeeeEeeeChHhHHHhhcCCCeEEEccCCC
Q 029233           10 THFGFCCNVDEETSRELARLPGVLTVRPDPD   40 (197)
Q Consensus        10 ~~~~f~c~i~ee~s~~l~~lpgv~~v~pd~~   40 (197)
                      .--||.+.++|+..++|+++|+|.+|-||.-
T Consensus        80 ~~~GFaa~Lt~~~~~~L~~~P~V~~VE~D~~  110 (114)
T 2w2n_P           80 LLPGFLVKMSGDLLELALKLPHVDYIEEDSS  110 (114)
T ss_dssp             SSSEEEEECCGGGHHHHHTSTTEEEEEEEEE
T ss_pred             cceEEEEEcCHHHHHHHHcCCCccEEEeCce
Confidence            3459999999999999999999999999853

>2z30_B TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 2z2y_B 3a3p_B 2z56_B 2z58_B 2z57_B 3a3n_B 3a3o_B

Probab=93.67  E-value=0.063  Score=36.63  Aligned_cols=28  Identities=25%  Similarity=0.414  Sum_probs=26.1

Q ss_pred             eeEeeeChHhHHHhhcCCCeEEEccCCC
Q 029233           13 GFCCNVDEETSRELARLPGVLTVRPDPD   40 (197)
Q Consensus        13 ~f~c~i~ee~s~~l~~lpgv~~v~pd~~   40 (197)
                      ++.+++++++.++|+++|||..|-+|..
T Consensus        34 a~~~~lp~~~~~~L~~~p~V~yVE~D~~   61 (65)
T 2z30_B           34 AVVVDVPANAVGKLKKMPGVEKVEFDHQ   61 (65)
T ss_dssp             EEEEEECGGGHHHHHTSTTEEEEEECCE
T ss_pred             EEEEEeCHHHHHHHhcCCCceEEecCcE
Confidence            7899999999999999999999999963

>2qtw_A Proprotein convertase subtilisin/kexin type 9 Pro; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_A 2pmw_A 3h42_A 3bps_P 3gcw_P 3gcx_P 3p5b_P 3p5c_P

Probab=93.08  E-value=0.054  Score=41.75  Aligned_cols=31  Identities=19%  Similarity=0.224  Sum_probs=27.9

Q ss_pred             ceeeeEeeeChHhHHHhhcCCCeEEEccCCC
Q 029233           10 THFGFCCNVDEETSRELARLPGVLTVRPDPD   40 (197)
Q Consensus        10 ~~~~f~c~i~ee~s~~l~~lpgv~~v~pd~~   40 (197)
                      .--||.+.++|+..++|+++|+|.+|-||.-
T Consensus        90 ~~~GFaa~l~~~~~~~L~~~p~V~~VE~D~~  120 (124)
T 2qtw_A           90 LLPGFLVKMSGDLLELALKLPHVDYIEEDSS  120 (124)
T ss_dssp             SSCEEEEECCGGGHHHHHTSTTEEEEEEEEE
T ss_pred             cceEEEEEcCHHHHHHHHcCCCCcEEEeCce
Confidence            3459999999999999999999999999853

>1v5i_B POIA1, IA-1=serine proteinase inhibitor; protease-inhibitor complex, subtilisin, hydrolase-Pro binding complex; 1.50A {Pleurotus ostreatus} SCOP: d.58.3.2 PDB: 1itp_A

Probab=86.82  E-value=0.56  Score=32.60  Aligned_cols=31  Identities=13%  Similarity=0.160  Sum_probs=27.5

Q ss_pred             ceeeeEeeeChHhHHHhhcC--CCeEEEccCCC
Q 029233           10 THFGFCCNVDEETSRELARL--PGVLTVRPDPD   40 (197)
Q Consensus        10 ~~~~f~c~i~ee~s~~l~~l--pgv~~v~pd~~   40 (197)
                      .-=||.+.++|++.++|+..  |.|.+|-+|.-
T Consensus        40 ~~~Gfa~~~~~~~l~~l~~~~~p~V~~VE~D~~   72 (76)
T 1v5i_B           40 GMKGFAGELTPQSLTKFQGLQGDLIDSIEEDHV   72 (76)
T ss_dssp             TEEEEEEEECHHHHHHHHHTBTTTEEEEEECCE
T ss_pred             ceeEEEEEcCHHHHHHHHhcCCCCCcEEcCCcE
Confidence            34699999999999999999  77999999964

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	197
d1scjb_	71	Subtilisin prosegment {Bacillus subtilis [TaxId: 1	98.41
d1v5ib1	72	Proteinase A inhibitor 1, POIA1 {Oyster mushroom (	98.39
d1scjb_	71	Subtilisin prosegment {Bacillus subtilis [TaxId: 1	92.55
d1v5ib1	72	Proteinase A inhibitor 1, POIA1 {Oyster mushroom (	87.45

>d1scjb_ d.58.3.2 (B:) Subtilisin prosegment {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Protease propeptides/inhibitors
family: Subtilase propeptides/inhibitors
domain: Subtilisin prosegment
species: Bacillus subtilis [TaxId: 1423]

Probab=98.41  E-value=3e-07  Score=63.61  Aligned_cols=68  Identities=15%  Similarity=0.138  Sum_probs=51.9

Q ss_pred             eeEEEEecCCCCCCcchhhHHHHHHHHHHHHhCCchhcccceEEEeecceeeEEeEeCHHHHHHhcCCCCeEEEcCCCCc
Q 029233           75 KHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTGVPGVLSVQPDENF  154 (197)
Q Consensus        75 ~~YIV~M~~p~~~~~~~~~~~~sH~q~LasVLgS~e~Ak~sI~ysYt~~f~GFAA~LTeeeA~kLs~lPGVVSVfPD~~~  154 (197)
                      +.|||.+.......     ..+.+.+++.+.       -.++.+.|. .++||+|+|+++++++|++.|+|..|-||...
T Consensus         2 ~~YIV~fK~~~~~~-----~~~~~~~~v~~~-------gg~v~~~~~-~i~gfs~~l~~~~~~~L~~~p~V~yVE~D~v~   68 (71)
T d1scjb_           2 KKYIVGFKQTMSAM-----SSAKKKDVISQK-------GGKVEKQFK-YVNAAAATLDEKAVKELKKDPSVAYVEEDHIA   68 (71)
T ss_dssp             EEEEEEECSSSSCC-----SHHHHHHHHHTT-------TCEEEEECS-SSSEEEEEECHHHHHHHHTSTTEEEEEECCEE
T ss_pred             CcEEEEECCCCChH-----HHHHHHHHHHHc-------CCeEEEEEe-ecceEEEEeCHHHHHHHHcCCCceEEeCCcEE
Confidence            57999998765433     233455444322       235888886 69999999999999999999999999999865


Q ss_pred             C
Q 029233          155 G  155 (197)
Q Consensus       155 ~  155 (197)
                      +
T Consensus        69 ~   69 (71)
T d1scjb_          69 H   69 (71)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1v5ib1 d.58.3.2 (B:1-72) Proteinase A inhibitor 1, POIA1 {Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Protease propeptides/inhibitors
family: Subtilase propeptides/inhibitors
domain: Proteinase A inhibitor 1, POIA1
species: Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]

Probab=98.39  E-value=3.9e-07  Score=63.09  Aligned_cols=66  Identities=17%  Similarity=0.224  Sum_probs=50.1

Q ss_pred             eeEEEEecCCCCCCcchhhHHHHHHHHHHHHhCCchhcccceEEEee-cceeeEEeEeCHHHHHHhcCCCC--eEEEcCC
Q 029233           75 KHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSW-QSNFGFCCELDDECAQELTGVPG--VLSVQPD  151 (197)
Q Consensus        75 ~~YIV~M~~p~~~~~~~~~~~~sH~q~LasVLgS~e~Ak~sI~ysYt-~~f~GFAA~LTeeeA~kLs~lPG--VVSVfPD  151 (197)
                      ..|||.|....     +...++.|..++.+.-|       .+-|.|. +.|+||+|+|++++++.|+.+|+  |-.|=+|
T Consensus         3 G~YIVvlK~~~-----~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~GFaa~l~e~~l~~lr~~p~~~V~yVE~D   70 (72)
T d1v5ib1           3 GKFIVIFKNDV-----SEDKIRETKDEVIAEGG-------TITNEYNMPGMKGFAGELTPQSLTKFQGLQGDLIDSIEED   70 (72)
T ss_dssp             EEEEEEECTTC-----CHHHHHHHHHHHHHHTC-------CCCEEEEETTEEEEEEEECHHHHHHHHHTBTTTEEEEEEC
T ss_pred             ccEEEEECCCC-----CHHHHHHHHHHHHhcCC-------ceEEEEeeeeeeEEEEecCHHHHHHHHhCCCCCCceECCC
Confidence            36999999633     22356778877776543       2445555 78999999999999999999776  9988877


Q ss_pred             C
Q 029233          152 E  152 (197)
Q Consensus       152 ~  152 (197)
                      .
T Consensus        71 ~   71 (72)
T d1v5ib1          71 H   71 (72)
T ss_dssp             C
T ss_pred             C
Confidence            5

>d1scjb_ d.58.3.2 (B:) Subtilisin prosegment {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Protease propeptides/inhibitors
family: Subtilase propeptides/inhibitors
domain: Subtilisin prosegment
species: Bacillus subtilis [TaxId: 1423]

Probab=92.55  E-value=0.055  Score=36.17  Aligned_cols=29  Identities=28%  Similarity=0.338  Sum_probs=27.1

Q ss_pred             eeeeEeeeChHhHHHhhcCCCeEEEccCC
Q 029233           11 HFGFCCNVDEETSRELARLPGVLTVRPDP   39 (197)
Q Consensus        11 ~~~f~c~i~ee~s~~l~~lpgv~~v~pd~   39 (197)
                      -=||..+++|+..++|+..|+|..|-||.
T Consensus        38 i~gfs~~l~~~~~~~L~~~p~V~yVE~D~   66 (71)
T d1scjb_          38 VNAAAATLDEKAVKELKKDPSVAYVEEDH   66 (71)
T ss_dssp             SSEEEEEECHHHHHHHHTSTTEEEEEECC
T ss_pred             cceEEEEeCHHHHHHHHcCCCceEEeCCc
Confidence            45899999999999999999999999985

>d1v5ib1 d.58.3.2 (B:1-72) Proteinase A inhibitor 1, POIA1 {Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Protease propeptides/inhibitors
family: Subtilase propeptides/inhibitors
domain: Proteinase A inhibitor 1, POIA1
species: Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]

Probab=87.45  E-value=0.23  Score=33.01  Aligned_cols=30  Identities=17%  Similarity=0.325  Sum_probs=26.9

Q ss_pred             ceeeeEeeeChHhHHHhhcCCC--eEEEccCC
Q 029233           10 THFGFCCNVDEETSRELARLPG--VLTVRPDP   39 (197)
Q Consensus        10 ~~~~f~c~i~ee~s~~l~~lpg--v~~v~pd~   39 (197)
                      .--||-..++|++.++|+.+|+  |..|-+|.
T Consensus        40 ~~~GFaa~l~e~~l~~lr~~p~~~V~yVE~D~   71 (72)
T d1v5ib1          40 GMKGFAGELTPQSLTKFQGLQGDLIDSIEEDH   71 (72)
T ss_dssp             TEEEEEEEECHHHHHHHHHTBTTTEEEEEECC
T ss_pred             eeeEEEEecCHHHHHHHHhCCCCCCceECCCC
Confidence            3469999999999999999998  99999884