Citrus Sinensis ID: 029236

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190------
Protein Sequence
MAVSYSQCVQSLKVSLTGSDRCRDNDMKRNCLVFASSTESNSNPVLQSKVDRLLDSVKWDNKGLAVAIAQNVDTGAILMQGFANRDALATTISSRKATFYSRSRSTLWTKGETSQNFINVQDIFLDCDRDSIIYLGKPDGPTCHTGSETCYYTSVLDALKDQPVGSFISLAHTAVLFGIPESELDSSDRFKEIIWQ
Secondary Structure (PSIPRED)
ccccccccccccEEEcccccccccHHHHHHHHHHccccccccccccHHHHHHHHHHccccccccEEEEEEEcccccEEEEEHHcHHHHHHHHHcccEEEEEcccccccccccccccEEEEEEEEccccccEEEEEEEccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHcccccccEEEccccccccHEHEcccccccccccHHHHHHHHHHcccccccccEEEEEEcccccEEEEEHHcHHHHHHHHHcccEEEEEccHHHHHHcccccccEEEEEEEEEcccccEEEEEEEcccccccccccccEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHcccEEEEc
Coil and Loop (DISEMBL)
MAVSYSQCVQSLKVsltgsdrcrdndmkrNCLVFAsstesnsnpvlqSKVDRLLDSVKWDNKGLAVAIAQNVDTGAILMQGFANRDALATTISSrkatfysrsrstlwtkgetsqnfiNVQDIfldcdrdsiiylgkpdgptchtgsetcyytsvldalkdqpvgsFISLAHTAVLfgipeseldssdrfkeiiwq
Flexible Loop (DISEMBL)
mavsysqcVQSLKvsltgsdrcrdnDMKRNCLVFasstesnsnpvlqSKVDRLLDSVKWDNKGLAVAIAQNVDTGAILMQGFANRDALATtissrkatfysrsrstlwtkgetsqnfINVQDIFLDCDRDSIIYLGKPDGPTCHTGSETCYYTSVLDALKDQPVGSFISLAHTAVLFgipeseldssdrFKEIIWQ
Low Complexity Region (SEG)
MAVSYSQCVQSLKVSLTGSDRCRDNDMKRNCLVFASSTESNSNPVLQSKVDRLLDSVKWDNKGLAVAIAQNVDTGAILMQGFANRDALATTISSRKATFYSRSRSTLWTKGETSQNFINVQDIFLDCDRDSIIYLGKPDGPTCHTGSETCYYTSVLDALKDQPVGSFISLAHTAVLFGIPESELDSSDRFKEIIWQ
Disordered region (IsUnstruct)
*****************************NCLVF**************KVDRLLDSVKWDNKGLAVAIAQNVDTGAILMQGFANRDALATTISSRKATFYSRSRSTLWTKGETSQNFINVQDIFLDCDRDSIIYLGKPDGPTCHTGSETCYYTSVLDALKDQPVGSFISLAHTAVLFGIP****************
Disordered Region (DISOPRED)
***************************************************RLLDSVKWDNKGLAVAIAQNVDTGAILMQGFANRDALATTISSRKATFYSRSRSTLWTKGETSQNFINVQDIFLDCDRDSIIYLGKPDGPTCHTGSETCYYTSVLDAL*********SLAHTAVLF*******************
Disordered Region (DISEMBL)
**********SLKVSLTGSDRCRDNDMKRNCLVFASSTESNSNPVLQSKVDRLLDSVKWDNKGLAVAIAQNVDTGAILMQGFANRDALATTISSRKATFYSRSRSTLWTKGETSQNFINVQDIFLDCDRDSIIYLGKPDGPTCHTGSETCYYTSVLDALKDQPVGSFISLAHTAVLFGIPESELDSSDRFKEIIWQ
Disordered Region (DISPRO)
***SYSQCVQSLKVSLTGSDRCRDNDMKRNCLVFASSTESNSNPVLQSKVDRLLDSVKWDNKGLAVAIAQNVDTGAILMQGFANRDALATTISSRKATFYSRSRSTLWTKGETSQNFINVQDIFLDCDRDSIIYLGKPDGPTCHTGSETCYYTSVLDALKDQPVGSFISLAHTAVLFGIPESELDSSDRFKEIIWQ
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAVSYSQCVQSLKVSLTGSDRCRDNDMKRNCLVFASSTESNSNPVLQSKVDRLLDSVKWDNKGLAVAIAQNVDTGAILMQGFANRDALATTISSRKATFYSRSRSTLWTKGETSQNFINVQDIFLDCDRDSIIYLGKPDGPTCHTGSETCYYTSVLDALKDQPVGSFISLAHTAVLFGIPESELDSSDRFKEIIWQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	196	2.2.26 [Sep-21-2011]
O82768	281	Histidine biosynthesis bi	yes	no	0.857	0.597	0.651	5e-58
P62350	214	Histidine biosynthesis bi	yes	no	0.627	0.574	0.390	1e-26
Q8CQ91	211	Histidine biosynthesis bi	yes	no	0.545	0.507	0.448	2e-23
Q5HKP3	211	Histidine biosynthesis bi	yes	no	0.545	0.507	0.448	2e-23
Q2NAM2	125	Phosphoribosyl-AMP cycloh	yes	no	0.530	0.832	0.485	4e-23
B4S4Y9	137	Phosphoribosyl-AMP cycloh	yes	no	0.545	0.781	0.439	5e-23
Q9CLL8	201	Histidine biosynthesis bi	yes	no	0.454	0.442	0.505	6e-23
P44434	221	Histidine biosynthesis bi	yes	no	0.459	0.407	0.5	6e-23
A1BDQ9	137	Phosphoribosyl-AMP cycloh	yes	no	0.545	0.781	0.439	8e-23
Q3B281	137	Phosphoribosyl-AMP cycloh	yes	no	0.535	0.766	0.457	1e-22

>sp|O82768|HIS2_ARATH Histidine biosynthesis bifunctional protein hisIE, chloroplastic OS=Arabidopsis thaliana GN=At1g31860 PE=2 SV=1

 Score =  223 bits (569), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 114/175 (65%), Positives = 136/175 (77%), Gaps = 7/175 (4%)

Query: 1   MAVSYSQCVQSLKVS---LTGSDRCRDNDMK-RNCLVFASSTESNSNPVLQSKVDRLLDS 56
           MAVSY+   QSL  S   +      RD  ++ R+ +VFA +   N N  LQ+KVD LLD 
Sbjct: 1   MAVSYNALAQSLARSSCFIPKPYSFRDTKLRSRSNVVFACN--DNKNIALQAKVDNLLDR 58

Query: 57  VKWDNKGLAVAIAQNVDTGAILMQGFANRDALATTISSRKATFYSRSRSTLWTKGETSQN 116
           +KWD+KGLAVAIAQNVDTGA+LMQGF NR+AL+TTISSRKATF+SRSRSTLWTKGETS N
Sbjct: 59  IKWDDKGLAVAIAQNVDTGAVLMQGFVNREALSTTISSRKATFFSRSRSTLWTKGETSNN 118

Query: 117 FINVQDIFLDCDRDSIIYLGKPDGPTCHTGSETCYYTSVLDAL-KDQPVGSFISL 170
           FIN+ D+++DCDRDSIIYLG PDGPTCHTG ETCYYTSV D L  D+  G+ ++L
Sbjct: 119 FINILDVYVDCDRDSIIYLGTPDGPTCHTGEETCYYTSVFDQLNNDEASGNKLAL 173

Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 6EC: .EC: 1EC: .EC: 3EC: 1

>sp|P62350|HIS2_THET2 Histidine biosynthesis bifunctional protein HisIE OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=hisI PE=3 SV=1

 Score =  119 bits (299), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 55/141 (39%), Positives = 82/141 (58%), Gaps = 18/141 (12%)

Query: 54  LDSVKWDNKGLAVAIAQNVDTGAILMQGFANRDALATTISSRKATFYSRSRSTLWTKGET 113
           L +V++D KGL   + Q+  TG +L   +ANR+AL  T+ +R++TF+SRSR  LW KGET
Sbjct: 3   LSAVRFDEKGLVPVVVQDARTGEVLTLAYANREALEETLRTRRSTFFSRSRQALWRKGET 62

Query: 114 SQNFINVQDIFLDCDRDSIIYLGKPDGPTCHTGSETCYYTSVLDALKD------------ 161
           S +   V ++ LDCD D+++Y   P GP CHTG  TC++ ++L+  KD            
Sbjct: 63  SGHTQEVVEVLLDCDGDAVVYRVLPQGPACHTGERTCFHRALLEGEKDLGFVVGQVYATI 122

Query: 162 ------QPVGSFISLAHTAVL 176
                  P GS+++  H A L
Sbjct: 123 KERLRTLPEGSYVARMHHAGL 143

Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) (taxid: 262724)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 3

EC: 1

>sp|Q8CQ91|HIS2_STAES Histidine biosynthesis bifunctional protein HisIE OS=Staphylococcus epidermidis (strain ATCC 12228) GN=hisI PE=3 SV=1

 Score =  108 bits (271), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 48/107 (44%), Positives = 68/107 (63%)

Query: 62  KGLAVAIAQNVDTGAILMQGFANRDALATTISSRKATFYSRSRSTLWTKGETSQNFINVQ 121
           KGL   I Q+  T ++LM G+ N +A   T+  +K TF+SRS+  LWTKGETS +F +V+
Sbjct: 9   KGLVPVILQHAQTDSVLMLGYMNEEAYQKTLKEKKVTFFSRSKQRLWTKGETSGHFQHVE 68

Query: 122 DIFLDCDRDSIIYLGKPDGPTCHTGSETCYYTSVLDALKDQPVGSFI 168
            I LDCD+D+I+    P GPTCHTGS +C+ + +    K Q +   I
Sbjct: 69  SIHLDCDQDAILIKVMPQGPTCHTGSLSCFNSEIESRFKIQALAQTI 115

Staphylococcus epidermidis (strain ATCC 12228) (taxid: 176280)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 3

EC: 1

>sp|Q5HKP3|HIS2_STAEQ Histidine biosynthesis bifunctional protein HisIE OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=hisI PE=3 SV=1

 Score =  108 bits (271), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 48/107 (44%), Positives = 68/107 (63%)

Query: 62  KGLAVAIAQNVDTGAILMQGFANRDALATTISSRKATFYSRSRSTLWTKGETSQNFINVQ 121
           KGL   I Q+  T ++LM G+ N +A   T+  +K TF+SRS+  LWTKGETS +F +V+
Sbjct: 9   KGLVPVILQHAQTDSVLMLGYMNEEAYQKTLKEKKVTFFSRSKQRLWTKGETSGHFQHVE 68

Query: 122 DIFLDCDRDSIIYLGKPDGPTCHTGSETCYYTSVLDALKDQPVGSFI 168
            I LDCD+D+I+    P GPTCHTGS +C+ + +    K Q +   I
Sbjct: 69  SIHLDCDQDAILIKVMPQGPTCHTGSLSCFNSEIESRFKIQALAQTI 115

Staphylococcus epidermidis (strain ATCC 35984 / RP62A) (taxid: 176279)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 3

EC: 1

>sp|Q2NAM2|HIS3_ERYLH Phosphoribosyl-AMP cyclohydrolase OS=Erythrobacter litoralis (strain HTCC2594) GN=hisI PE=3 SV=1

 Score =  107 bits (268), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 51/105 (48%), Positives = 69/105 (65%), Gaps = 1/105 (0%)

Query: 58  KWDNKGLAVAIAQNVDTGAILMQGFANRDALATTISSRKATFYSRSRSTLWTKGETSQNF 117
           K+D+ GL  A+ Q+VDT  +LM  F N DAL  T  +  A F+SRSR TLW KG TS N 
Sbjct: 18  KFDSDGLLTAVVQHVDTREVLMVAFMNADALDATRKTGIAHFFSRSRQTLWKKGGTSGNT 77

Query: 118 INVQDIFLDCDRDSIIYLGKPDGPTCHTGSETCYYTSV-LDALKD 161
           + V  + +DCD+D++I L +P GP CHTG+ TC+Y  +   AL+D
Sbjct: 78  LAVSQVLVDCDQDAVILLVEPAGPACHTGARTCFYRELDCGALQD 122

Erythrobacter litoralis (strain HTCC2594) (taxid: 314225)

EC: 3

EC: .

EC: 5

EC: .

EC: 4

EC: .

EC: 1

EC: 9

>sp|B4S4Y9|HIS3_PROA2 Phosphoribosyl-AMP cyclohydrolase OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=hisI PE=3 SV=1

 Score =  107 bits (267), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 47/107 (43%), Positives = 68/107 (63%)

Query: 53  LLDSVKWDNKGLAVAIAQNVDTGAILMQGFANRDALATTISSRKATFYSRSRSTLWTKGE 112
            L++VK+D+KGL  AI Q+ +TG +LM  + NR +L  T+  +KA ++SRSR  LW KGE
Sbjct: 11  FLETVKFDDKGLVPAIVQDFETGKVLMMAWMNRQSLEMTLEKKKACYWSRSRQKLWLKGE 70

Query: 113 TSQNFINVQDIFLDCDRDSIIYLGKPDGPTCHTGSETCYYTSVLDAL 159
           +S N  NV DI +DCD D+++      G  CH G ++C+Y    D L
Sbjct: 71  SSGNMQNVHDILIDCDGDTLLLKVSQTGGACHMGYQSCFYRKTKDDL 117

Prosthecochloris aestuarii (strain DSM 271 / SK 413) (taxid: 290512)

EC: 3

EC: .

EC: 5

EC: .

EC: 4

EC: .

EC: 1

EC: 9

>sp|Q9CLL8|HIS2_PASMU Histidine biosynthesis bifunctional protein HisIE OS=Pasteurella multocida (strain Pm70) GN=hisI PE=3 SV=1

 Score =  107 bits (266), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 45/89 (50%), Positives = 66/89 (74%)

Query: 64  LAVAIAQNVDTGAILMQGFANRDALATTISSRKATFYSRSRSTLWTKGETSQNFINVQDI 123
           L   I QNV T  +LM G+ N++AL  T++ ++ TF+SR+++ LWTKGETS +F+NV D+
Sbjct: 11  LLPVIIQNVATCEVLMLGYMNQEALEKTLAEKRVTFFSRTKNRLWTKGETSGHFLNVVDM 70

Query: 124 FLDCDRDSIIYLGKPDGPTCHTGSETCYY 152
            LDCD D+++ L  P G TCHTG+E+C+Y
Sbjct: 71  SLDCDNDTLLILVNPIGETCHTGAESCFY 99

Pasteurella multocida (strain Pm70) (taxid: 272843)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 3

EC: 1

>sp|P44434|HIS2_HAEIN Histidine biosynthesis bifunctional protein HisIE OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=hisI PE=3 SV=1

 Score =  107 bits (266), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 45/90 (50%), Positives = 62/90 (68%)

Query: 63  GLAVAIAQNVDTGAILMQGFANRDALATTISSRKATFYSRSRSTLWTKGETSQNFINVQD 122
           GL   I QN+ T  +LM G+ N +AL  TI  RK TF+SR++  LWTKGE S NF+NV++
Sbjct: 13  GLLPVIIQNISTREVLMLGYMNEEALTKTIKERKVTFFSRTKQRLWTKGEISGNFLNVEE 72

Query: 123 IFLDCDRDSIIYLGKPDGPTCHTGSETCYY 152
           + LDCD D+++ L  P G TCHTG  +C++
Sbjct: 73  MSLDCDNDTLLILVDPIGATCHTGEYSCFH 102

Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (taxid: 71421)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 3

EC: 1

>sp|A1BDQ9|HIS3_CHLPD Phosphoribosyl-AMP cyclohydrolase OS=Chlorobium phaeobacteroides (strain DSM 266) GN=hisI PE=3 SV=1

 Score =  107 bits (266), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 47/107 (43%), Positives = 67/107 (62%)

Query: 53  LLDSVKWDNKGLAVAIAQNVDTGAILMQGFANRDALATTISSRKATFYSRSRSTLWTKGE 112
            LD+VK+D KGL  AI Q+ +TG +LM  + N ++L  T+  +KA ++SRSR  LW KGE
Sbjct: 11  FLDTVKYDEKGLVPAIVQDHETGKVLMMAWMNHESLLMTLEKKKACYWSRSRQKLWLKGE 70

Query: 113 TSQNFINVQDIFLDCDRDSIIYLGKPDGPTCHTGSETCYYTSVLDAL 159
           +S N  +V DI +DCD D+I+      G  CH G  +C+Y  V + L
Sbjct: 71  SSGNMQDVHDILIDCDGDTILLKVSQKGGACHVGYHSCFYRKVKETL 117

Chlorobium phaeobacteroides (strain DSM 266) (taxid: 290317)

EC: 3

EC: .

EC: 5

EC: .

EC: 4

EC: .

EC: 1

EC: 9

>sp|Q3B281|HIS3_PELLD Phosphoribosyl-AMP cyclohydrolase OS=Pelodictyon luteolum (strain DSM 273) GN=hisI PE=3 SV=1

 Score =  106 bits (264), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 48/105 (45%), Positives = 69/105 (65%)

Query: 53  LLDSVKWDNKGLAVAIAQNVDTGAILMQGFANRDALATTISSRKATFYSRSRSTLWTKGE 112
            LD+VK+D KGL  AI Q+ +TG +LM  + NR++L  T+  +KA ++SRSR+ LW KGE
Sbjct: 11  FLDTVKFDAKGLVPAIVQDHETGKVLMMAWMNRESLEMTLERKKACYWSRSRNKLWLKGE 70

Query: 113 TSQNFINVQDIFLDCDRDSIIYLGKPDGPTCHTGSETCYYTSVLD 157
           +S N  +V DI +DCD D++I      G  CH G  +C+Y  VL+
Sbjct: 71  SSGNMQDVYDILIDCDGDTLILKVSQIGGACHVGYHSCFYRRVLE 115

Pelodictyon luteolum (strain DSM 273) (taxid: 319225)

EC: 3

EC: .

EC: 5

EC: .

EC: 4

EC: .

EC: 1

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	196
225451641	289	PREDICTED: histidine biosynthesis bifunc	0.892	0.605	0.686	1e-61
297851624	281	AT-IE [Arabidopsis lyrata subsp. lyrata]	0.857	0.597	0.668	4e-58
358248860	281	uncharacterized protein LOC100807276 [Gl	0.795	0.555	0.696	9e-57
15222496	281	phosphoribosyl-ATP pyrophosphatase [Arab	0.857	0.597	0.651	3e-56
224121570	286	predicted protein [Populus trichocarpa]	0.714	0.489	0.758	6e-56
115435942	306	Os01g0276500 [Oryza sativa Japonica Grou	0.571	0.366	0.883	3e-54
326521454	298	predicted protein [Hordeum vulgare subsp	0.576	0.379	0.867	2e-53
357130914	297	PREDICTED: histidine biosynthesis bifunc	0.571	0.377	0.875	2e-53
326488907	222	predicted protein [Hordeum vulgare subsp	0.596	0.527	0.837	4e-53
413946888	299	histidine biosynthesis protein hisIE [Ze	0.586	0.384	0.843	5e-53

>gi|225451641|ref|XP_002277244.1| PREDICTED: histidine biosynthesis bifunctional protein hisIE, chloroplastic [Vitis vinifera] gi|296082253|emb|CBI21258.3| unnamed protein product [Vitis vinifera]

 Score =  241 bits (614), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 125/182 (68%), Positives = 144/182 (79%), Gaps = 7/182 (3%)

Query: 1   MAVSYSQCVQSLKVS------LTGSDRCRDND-MKRNCLVFASSTESNSNPVLQSKVDRL 53
           MAVSYS C+QSL+V+      ++  D  RDN  MK    V ASS + + +  L++KV+ L
Sbjct: 1   MAVSYSHCLQSLRVTPRTRLFVSNVDCWRDNRIMKSYSPVSASSKKPHQDLSLEAKVETL 60

Query: 54  LDSVKWDNKGLAVAIAQNVDTGAILMQGFANRDALATTISSRKATFYSRSRSTLWTKGET 113
           LDSVKWD+KGLAVAIAQNVDTGA+LMQGF NRDALATTISS+KATFYSRSRS LWTKGET
Sbjct: 61  LDSVKWDDKGLAVAIAQNVDTGAVLMQGFVNRDALATTISSQKATFYSRSRSKLWTKGET 120

Query: 114 SQNFINVQDIFLDCDRDSIIYLGKPDGPTCHTGSETCYYTSVLDALKDQPVGSFISLAHT 173
           S NFIN+ DIFLDCDRDSIIYLGKPDGPTCHTGSETCYY+SV D LK+       +LA T
Sbjct: 121 SLNFINIHDIFLDCDRDSIIYLGKPDGPTCHTGSETCYYSSVFDLLKNPQGEENNNLALT 180

Query: 174 AV 175
           A+
Sbjct: 181 AL 182

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297851624|ref|XP_002893693.1| AT-IE [Arabidopsis lyrata subsp. lyrata] gi|297339535|gb|EFH69952.1| AT-IE [Arabidopsis lyrata subsp. lyrata]

 Score =  229 bits (584), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 117/175 (66%), Positives = 138/175 (78%), Gaps = 7/175 (4%)

Query: 1   MAVSYSQCVQSLKVS---LTGSDRCRDNDMK-RNCLVFASSTESNSNPVLQSKVDRLLDS 56
           MAVSY+   QSL  S   +  S   RD   + R+ +VFAS+   N N  LQ+KVD LLD 
Sbjct: 1   MAVSYNALAQSLTRSSCFIPKSYCVRDTKQRSRSNVVFASN--DNKNIALQAKVDNLLDR 58

Query: 57  VKWDNKGLAVAIAQNVDTGAILMQGFANRDALATTISSRKATFYSRSRSTLWTKGETSQN 116
           +KWD+KGLAVAIAQNVDTGA+LMQGF NR+AL+TTISSRKATF+SRSRSTLWTKGETS N
Sbjct: 59  IKWDDKGLAVAIAQNVDTGAVLMQGFVNREALSTTISSRKATFFSRSRSTLWTKGETSNN 118

Query: 117 FINVQDIFLDCDRDSIIYLGKPDGPTCHTGSETCYYTSVLDAL-KDQPVGSFISL 170
           FIN+ D+++DCDRDSIIYLG PDGPTCHTG ETCYYTSV D L  D+P G+ ++L
Sbjct: 119 FINILDVYIDCDRDSIIYLGTPDGPTCHTGEETCYYTSVFDQLNNDEPSGNKLAL 173

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248860|ref|NP_001240208.1| uncharacterized protein LOC100807276 [Glycine max] gi|255641260|gb|ACU20907.1| unknown [Glycine max]

 Score =  225 bits (573), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 115/165 (69%), Positives = 124/165 (75%), Gaps = 9/165 (5%)

Query: 1   MAVSYS---QCVQSLKVSLTGSDRCRDNDMKRNCLVFASSTESNSNPVLQSKVDRLLDSV 57
           MAVSY    QC +           C     + + LVFAS       P  + KVD LLDSV
Sbjct: 1   MAVSYVHMLQCNRGFHKGNLSYPNCSYKARRSHRLVFASM----HTP--EPKVDSLLDSV 54

Query: 58  KWDNKGLAVAIAQNVDTGAILMQGFANRDALATTISSRKATFYSRSRSTLWTKGETSQNF 117
           KWD KGL VAIAQNVDTGAILMQGFANR+A+ATTISSRKATFYSRSRSTLWTKGETS NF
Sbjct: 55  KWDTKGLVVAIAQNVDTGAILMQGFANREAIATTISSRKATFYSRSRSTLWTKGETSNNF 114

Query: 118 INVQDIFLDCDRDSIIYLGKPDGPTCHTGSETCYYTSVLDALKDQ 162
           INV D+F+DCDRDSIIYLGKPDGPTCHTG+ETCYYTSV D LK Q
Sbjct: 115 INVHDVFIDCDRDSIIYLGKPDGPTCHTGAETCYYTSVFDLLKQQ 159

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15222496|ref|NP_174469.1| phosphoribosyl-ATP pyrophosphatase [Arabidopsis thaliana] gi|11132859|sp|O82768.1|HIS2_ARATH RecName: Full=Histidine biosynthesis bifunctional protein hisIE, chloroplastic; Includes: RecName: Full=Phosphoribosyl-AMP cyclohydrolase; Short=PRA-CH; Includes: RecName: Full=Phosphoribosyl-ATP pyrophosphatase; Short=PRA-PH; Flags: Precursor gi|12321304|gb|AAG50725.1|AC079041_18 phosphoribosyl-ATP pyrophosphohydrolase (At-IE) [Arabidopsis thaliana] gi|3461884|dbj|BAA32528.1| phosphoribosyl-ATP pyrophosphohydrolase [Arabidopsis thaliana] gi|3461886|dbj|BAA32529.1| phosphoribosyl-ATP pyrophosphohydrolase [Arabidopsis thaliana] gi|15028395|gb|AAK76674.1| putative phosphoribosyl-ATP pyrophosphohydrolase At-IE [Arabidopsis thaliana] gi|19310753|gb|AAL85107.1| putative phosphoribosyl-ATP pyrophosphohydrolase At-IE [Arabidopsis thaliana] gi|21554409|gb|AAM63514.1| phosphoribosyl-ATP pyrophosphohydrolase At-IE [Arabidopsis thaliana] gi|332193287|gb|AEE31408.1| phosphoribosyl-ATP pyrophosphatase [Arabidopsis thaliana]

 Score =  223 bits (569), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 114/175 (65%), Positives = 136/175 (77%), Gaps = 7/175 (4%)

Query: 1   MAVSYSQCVQSLKVS---LTGSDRCRDNDMK-RNCLVFASSTESNSNPVLQSKVDRLLDS 56
           MAVSY+   QSL  S   +      RD  ++ R+ +VFA +   N N  LQ+KVD LLD 
Sbjct: 1   MAVSYNALAQSLARSSCFIPKPYSFRDTKLRSRSNVVFACN--DNKNIALQAKVDNLLDR 58

Query: 57  VKWDNKGLAVAIAQNVDTGAILMQGFANRDALATTISSRKATFYSRSRSTLWTKGETSQN 116
           +KWD+KGLAVAIAQNVDTGA+LMQGF NR+AL+TTISSRKATF+SRSRSTLWTKGETS N
Sbjct: 59  IKWDDKGLAVAIAQNVDTGAVLMQGFVNREALSTTISSRKATFFSRSRSTLWTKGETSNN 118

Query: 117 FINVQDIFLDCDRDSIIYLGKPDGPTCHTGSETCYYTSVLDAL-KDQPVGSFISL 170
           FIN+ D+++DCDRDSIIYLG PDGPTCHTG ETCYYTSV D L  D+  G+ ++L
Sbjct: 119 FINILDVYVDCDRDSIIYLGTPDGPTCHTGEETCYYTSVFDQLNNDEASGNKLAL 173

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224121570|ref|XP_002330733.1| predicted protein [Populus trichocarpa] gi|222872509|gb|EEF09640.1| predicted protein [Populus trichocarpa]

 Score =  222 bits (566), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 107/141 (75%), Positives = 122/141 (86%), Gaps = 1/141 (0%)

Query: 25  NDMKRNCLVFASS-TESNSNPVLQSKVDRLLDSVKWDNKGLAVAIAQNVDTGAILMQGFA 83
           N  +R  LVFAS+  +S+    L+SKV+ LLDSVKWD+KGLAV IAQN+DTGA+LMQGF 
Sbjct: 32  NKKQRGFLVFASADKKSDKELYLKSKVETLLDSVKWDDKGLAVGIAQNIDTGAVLMQGFV 91

Query: 84  NRDALATTISSRKATFYSRSRSTLWTKGETSQNFINVQDIFLDCDRDSIIYLGKPDGPTC 143
           N DALATTISS+KATFYSRSRS LWTKGETS+NFINV DI+LDCDRDSIIYLGKPDGPTC
Sbjct: 92  NSDALATTISSQKATFYSRSRSALWTKGETSKNFINVHDIYLDCDRDSIIYLGKPDGPTC 151

Query: 144 HTGSETCYYTSVLDALKDQPV 164
           HTGSETCYYTSV D L+++ V
Sbjct: 152 HTGSETCYYTSVPDLLENKQV 172

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115435942|ref|NP_001042729.1| Os01g0276500 [Oryza sativa Japonica Group] gi|56783703|dbj|BAD81115.1| putative phosphoribosyl-ATP pyrophosphohydrolase At-IE [Oryza sativa Japonica Group] gi|113532260|dbj|BAF04643.1| Os01g0276500 [Oryza sativa Japonica Group] gi|125525384|gb|EAY73498.1| hypothetical protein OsI_01380 [Oryza sativa Indica Group] gi|125569905|gb|EAZ11420.1| hypothetical protein OsJ_01288 [Oryza sativa Japonica Group] gi|215686456|dbj|BAG87669.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  216 bits (551), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 99/112 (88%), Positives = 108/112 (96%)

Query: 49  KVDRLLDSVKWDNKGLAVAIAQNVDTGAILMQGFANRDALATTISSRKATFYSRSRSTLW 108
           KV+ +LDSVKWD+KGLAVAIAQNVDTGAILMQGFAN++ALATTIS+RKATFYSRSRS+LW
Sbjct: 75  KVEAILDSVKWDSKGLAVAIAQNVDTGAILMQGFANKEALATTISTRKATFYSRSRSSLW 134

Query: 109 TKGETSQNFINVQDIFLDCDRDSIIYLGKPDGPTCHTGSETCYYTSVLDALK 160
           TKGETS NFINV DIFLDCDRDSIIYLGKPDGPTCHTG+ETCYYTSV DAL+
Sbjct: 135 TKGETSMNFINVHDIFLDCDRDSIIYLGKPDGPTCHTGAETCYYTSVYDALQ 186

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326521454|dbj|BAK00303.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  214 bits (544), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 98/113 (86%), Positives = 106/113 (93%)

Query: 49  KVDRLLDSVKWDNKGLAVAIAQNVDTGAILMQGFANRDALATTISSRKATFYSRSRSTLW 108
           KV+ LLDSVKWD KGLAVAIAQNVDTGAILMQGFAN++ALA TIS+RKATFYSRSRS+LW
Sbjct: 67  KVETLLDSVKWDVKGLAVAIAQNVDTGAILMQGFANKEALAATISTRKATFYSRSRSSLW 126

Query: 109 TKGETSQNFINVQDIFLDCDRDSIIYLGKPDGPTCHTGSETCYYTSVLDALKD 161
           TKGETS NFINV DIFLDCDRDSIIYLG PDGPTCHTG+ETCYY+SV DAL+D
Sbjct: 127 TKGETSMNFINVHDIFLDCDRDSIIYLGTPDGPTCHTGAETCYYSSVYDALQD 179

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357130914|ref|XP_003567089.1| PREDICTED: histidine biosynthesis bifunctional protein hisIE, chloroplastic-like [Brachypodium distachyon]

 Score =  213 bits (543), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 98/112 (87%), Positives = 106/112 (94%)

Query: 49  KVDRLLDSVKWDNKGLAVAIAQNVDTGAILMQGFANRDALATTISSRKATFYSRSRSTLW 108
           KV+ LLDSVKWD KGLAVAIAQNVDTGAILMQGFAN++ALATTIS+RKATFYSRSRS+LW
Sbjct: 66  KVEALLDSVKWDIKGLAVAIAQNVDTGAILMQGFANKEALATTISTRKATFYSRSRSSLW 125

Query: 109 TKGETSQNFINVQDIFLDCDRDSIIYLGKPDGPTCHTGSETCYYTSVLDALK 160
           TKGETS NFINV DIFLDCDRDSIIYLG PDGPTCHTG+ETCYY+SV DAL+
Sbjct: 126 TKGETSMNFINVHDIFLDCDRDSIIYLGTPDGPTCHTGAETCYYSSVYDALQ 177

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326488907|dbj|BAJ98065.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  213 bits (541), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 98/117 (83%), Positives = 107/117 (91%)

Query: 45  VLQSKVDRLLDSVKWDNKGLAVAIAQNVDTGAILMQGFANRDALATTISSRKATFYSRSR 104
            +  KV+ LLDSVKWD KGLAVAIAQNVDTGAILMQGFAN++ALA TIS+RKATFYSRSR
Sbjct: 63  AVDPKVETLLDSVKWDVKGLAVAIAQNVDTGAILMQGFANKEALAATISTRKATFYSRSR 122

Query: 105 STLWTKGETSQNFINVQDIFLDCDRDSIIYLGKPDGPTCHTGSETCYYTSVLDALKD 161
           S+LWTKGETS NFINV DIFLDCDRDSIIYLG PDGPTCHTG+ETCYY+SV DAL+D
Sbjct: 123 SSLWTKGETSMNFINVHDIFLDCDRDSIIYLGTPDGPTCHTGAETCYYSSVYDALQD 179

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413946888|gb|AFW79537.1| histidine biosynthesis protein hisIE [Zea mays]

 Score =  212 bits (540), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 97/115 (84%), Positives = 108/115 (93%)

Query: 46  LQSKVDRLLDSVKWDNKGLAVAIAQNVDTGAILMQGFANRDALATTISSRKATFYSRSRS 105
           + ++VD LLDSVKWD+KGLAVAIAQNVDTGAILMQGFAN++ALA TIS+RKATF+SRSRS
Sbjct: 65  VDTEVDTLLDSVKWDSKGLAVAIAQNVDTGAILMQGFANKEALAKTISTRKATFFSRSRS 124

Query: 106 TLWTKGETSQNFINVQDIFLDCDRDSIIYLGKPDGPTCHTGSETCYYTSVLDALK 160
           +LWTKGETS NFINV DIFLDCD DSIIYLGKPDGPTCHTG+ETCYYTSV DAL+
Sbjct: 125 SLWTKGETSMNFINVHDIFLDCDHDSIIYLGKPDGPTCHTGAETCYYTSVYDALQ 179

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	196
TAIR|locus:2034516	281	AT-IE [Arabidopsis thaliana (t	0.857	0.597	0.651	2.6e-54
TIGR_CMR|CPS_3896	206	CPS_3896 "phosphoribosyl-ATP p	0.469	0.446	0.510	1.6e-22
TIGR_CMR|DET_1329	104	DET_1329 "phosphoribosyl-AMP c	0.505	0.951	0.444	9e-22
UNIPROTKB|P06989	203	hisI "phosphoribosyl-AMP cyclo	0.535	0.517	0.467	1.9e-21
UNIPROTKB|Q9KSW7	210	hisI "Histidine biosynthesis b	0.545	0.509	0.427	3e-21
TIGR_CMR|VC_1139	210	VC_1139 "phosphoribosyl-ATP py	0.545	0.509	0.427	3e-21
TIGR_CMR|CJE_1776	207	CJE_1776 "phosphoribosyl-ATP p	0.505	0.478	0.43	5.7e-20
TIGR_CMR|SPO_1684	119	SPO_1684 "phosphoribosyl-AMP c	0.510	0.840	0.42	1.2e-19
TIGR_CMR|SO_2067	211	SO_2067 "phosphoribosyl-ATP py	0.474	0.440	0.446	1.4e-18
TIGR_CMR|CHY_1091	203	CHY_1091 "histidine biosynthes	0.505	0.487	0.383	7.5e-18

TAIR|locus:2034516 AT-IE [Arabidopsis thaliana (taxid:3702)]

 Score = 561 (202.5 bits), Expect = 2.6e-54, P = 2.6e-54
 Identities = 114/175 (65%), Positives = 136/175 (77%)

Query:     1 MAVSYSQCVQSLKVS---LTGSDRCRDNDMK-RNCLVFASSTESNSNPVLQSKVDRLLDS 56
             MAVSY+   QSL  S   +      RD  ++ R+ +VFA +   N N  LQ+KVD LLD 
Sbjct:     1 MAVSYNALAQSLARSSCFIPKPYSFRDTKLRSRSNVVFACN--DNKNIALQAKVDNLLDR 58

Query:    57 VKWDNKGLAVAIAQNVDTGAILMQGFANRDALATTISSRKATFYSRSRSTLWTKGETSQN 116
             +KWD+KGLAVAIAQNVDTGA+LMQGF NR+AL+TTISSRKATF+SRSRSTLWTKGETS N
Sbjct:    59 IKWDDKGLAVAIAQNVDTGAVLMQGFVNREALSTTISSRKATFFSRSRSTLWTKGETSNN 118

Query:   117 FINVQDIFLDCDRDSIIYLGKPDGPTCHTGSETCYYTSVLDALK-DQPVGSFISL 170
             FIN+ D+++DCDRDSIIYLG PDGPTCHTG ETCYYTSV D L  D+  G+ ++L
Sbjct:   119 FINILDVYVDCDRDSIIYLGTPDGPTCHTGEETCYYTSVFDQLNNDEASGNKLAL 173

GO:0000105 "histidine biosynthetic process" evidence=IEA;TAS

GO:0004635 "phosphoribosyl-AMP cyclohydrolase activity" evidence=IEA;IDA

GO:0004636 "phosphoribosyl-ATP diphosphatase activity" evidence=IEA;IDA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009165 "nucleotide biosynthetic process" evidence=RCA

TIGR_CMR|CPS_3896 CPS_3896 "phosphoribosyl-ATP pyrophosphatase/phosphoribosyl-AMP cyclohydrolase" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 48/94 (51%), Positives = 67/94 (71%)

Query:    58 KWDNKGLAVAIAQNVDTGAILMQGFANRDALATTISSRKATFYSRSRSTLWTKGETSQNF 117
             K DN  L  AI Q+  TGAILMQG+ N+ +L  T+++ KATF+SRS+  LW KGETS NF
Sbjct:    15 KMDN--LIPAIIQHAATGAILMQGYMNQASLQATLTTGKATFFSRSKQALWVKGETSGNF 72

Query:   118 INVQDIFLDCDRDSIIYLGKPDGPTCHTGSETCY 151
             + V+ +  DCD DS++   +P GP+CH G+E+C+
Sbjct:    73 LEVKQVLTDCDNDSLLIACEPIGPSCHLGTESCF 106

GO:0000105 "histidine biosynthetic process" evidence=ISS

GO:0004635 "phosphoribosyl-AMP cyclohydrolase activity" evidence=ISS

GO:0004636 "phosphoribosyl-ATP diphosphatase activity" evidence=ISS

TIGR_CMR|DET_1329 DET_1329 "phosphoribosyl-AMP cyclohydrolase" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
 Identities = 44/99 (44%), Positives = 67/99 (67%)

Query:    57 VKWDNKGLAVAIAQNVDTGAILMQGFANRDALATTISSRKATFYSRSRSTLWTKGETSQN 116
             +K D+KGL  AI Q+V  G +LM G+ N ++   T  +    FYSRSR  LW KG TS N
Sbjct:     3 LKLDDKGLIAAIVQDVKDGTVLMLGYMNPESFKLTQETGSVWFYSRSRQELWNKGATSGN 62

Query:   117 FINVQDIFLDCDRDSIIYLGKPDGPTCHTGSETCYYTSV 155
              + V+++++DCD+D+++   +P GPTCHTG+ +C++T V
Sbjct:    63 KLIVKEMYIDCDKDAVLVKAEPMGPTCHTGNRSCFFTPV 101

GO:0000105 "histidine biosynthetic process" evidence=ISS

GO:0004635 "phosphoribosyl-AMP cyclohydrolase activity" evidence=ISS

UNIPROTKB|P06989 hisI "phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphatase" [Escherichia coli K-12 (taxid:83333)]

 Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
 Identities = 50/107 (46%), Positives = 68/107 (63%)

Query:    45 VLQSKVDRLLDSVKWDNKGLAVAIAQNVDTGAILMQGFANRDALATTISSRKATFYSRSR 104
             +L  +  R LD  K D  GL   I Q+  +G +LM G+ N +AL  T+ S K TF+SR++
Sbjct:     1 MLTEQQRRELDWEKTD--GLMPVIVQHAVSGEVLMLGYMNPEALDKTLESGKVTFFSRTK 58

Query:   105 STLWTKGETSQNFINVQDIFLDCDRDSIIYLGKPDGPTCHTGSETCY 151
               LWTKGETS NF+NV  I  DCD D+++ L  P GPTCH G+ +C+
Sbjct:    59 QRLWTKGETSGNFLNVVSIAPDCDNDTLLVLANPIGPTCHKGTSSCF 105

GO:0008152 "metabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0008652 "cellular amino acid biosynthetic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0004636 "phosphoribosyl-ATP diphosphatase activity" evidence=IEA;IGI

GO:0004635 "phosphoribosyl-AMP cyclohydrolase activity" evidence=IEA;ISS

GO:0000105 "histidine biosynthetic process" evidence=IEA

UNIPROTKB|Q9KSW7 hisI "Histidine biosynthesis bifunctional protein HisIE" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 47/110 (42%), Positives = 70/110 (63%)

Query:    43 NPVLQSKVDRLLDSVKWDN-KGLAVAIAQNVDTGAILMQGFANRDALATTISSRKATFYS 101
             NP   S    L D + W    GL  AI Q+  +  +LM G+ N +AL  T+ +++ TF+S
Sbjct:     2 NPA--SPFATLTDRIDWQKVDGLVPAIVQDFQSSQVLMMGYMNPEALQKTLDTQQVTFFS 59

Query:   102 RSRSTLWTKGETSQNFINVQDIFLDCDRDSIIYLGKPDGPTCHTGSETCY 151
             RS+  LWTKGETS + + +++I LDCD+D+++    P GPTCHTG+ TC+
Sbjct:    60 RSKQRLWTKGETSGHVLQLKNIALDCDQDTLLVKVNPIGPTCHTGTVTCW 109

GO:0000105 "histidine biosynthetic process" evidence=ISS

GO:0004635 "phosphoribosyl-AMP cyclohydrolase activity" evidence=ISS

GO:0004636 "phosphoribosyl-ATP diphosphatase activity" evidence=ISS

TIGR_CMR|VC_1139 VC_1139 "phosphoribosyl-ATP pyrophosphatase/phosphoribosyl-AMP cyclohydrolase" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 47/110 (42%), Positives = 70/110 (63%)

Query:    43 NPVLQSKVDRLLDSVKWDN-KGLAVAIAQNVDTGAILMQGFANRDALATTISSRKATFYS 101
             NP   S    L D + W    GL  AI Q+  +  +LM G+ N +AL  T+ +++ TF+S
Sbjct:     2 NPA--SPFATLTDRIDWQKVDGLVPAIVQDFQSSQVLMMGYMNPEALQKTLDTQQVTFFS 59

Query:   102 RSRSTLWTKGETSQNFINVQDIFLDCDRDSIIYLGKPDGPTCHTGSETCY 151
             RS+  LWTKGETS + + +++I LDCD+D+++    P GPTCHTG+ TC+
Sbjct:    60 RSKQRLWTKGETSGHVLQLKNIALDCDQDTLLVKVNPIGPTCHTGTVTCW 109

GO:0000105 "histidine biosynthetic process" evidence=ISS

GO:0004635 "phosphoribosyl-AMP cyclohydrolase activity" evidence=ISS

GO:0004636 "phosphoribosyl-ATP diphosphatase activity" evidence=ISS

TIGR_CMR|CJE_1776 CJE_1776 "phosphoribosyl-ATP pyrophosphatase/phosphoribosyl-AMP cyclohydrolase" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
 Identities = 43/100 (43%), Positives = 61/100 (61%)

Query:    53 LLDSVKWDN-KGLAVAIAQNVDTGAILMQGFANRDALATTISSRKATFYSRSRSTLWTKG 111
             L + + W     L   I Q+  T  +LM GF N +AL  ++ S K  F+SR++  LW KG
Sbjct:     7 LNEKIAWQKVDNLLPVIIQDAKTCEVLMLGFMNNEALEKSLESGKVVFFSRTKQRLWMKG 66

Query:   112 ETSQNFINVQDIFLDCDRDSIIYLGKPDGPTCHTGSETCY 151
             E S NF+N+ D+ LDCD D+++ L  P GPTCHTG  +C+
Sbjct:    67 EESGNFLNIIDLSLDCDNDTLLILANPVGPTCHTGDISCF 106

GO:0000105 "histidine biosynthetic process" evidence=ISS

GO:0004635 "phosphoribosyl-AMP cyclohydrolase activity" evidence=ISS

GO:0004636 "phosphoribosyl-ATP diphosphatase activity" evidence=ISS

TIGR_CMR|SPO_1684 SPO_1684 "phosphoribosyl-AMP cyclohydrolase" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
 Identities = 42/100 (42%), Positives = 64/100 (64%)

Query:    56 SVKWDNKGLAVAIAQNVDTGAILMQGFANRDALATTISSRKATFYSRSRSTLWTKGETSQ 115
             ++K+D  GL  AIAQ+  TG +LM  + N  A+A T+ S + T++SRSR + W KGE+S 
Sbjct:     7 TLKYDAAGLIPAIAQDAATGEVLMMAWMNAQAVARTLESGRVTYWSRSRQSFWVKGESSG 66

Query:   116 NFINVQDIFLDCDRDSIIYLGKPDGPTCHTGSETCYYTSV 155
             +   + D  +DCDRD ++   +  GP CHT   +C+YT+V
Sbjct:    67 HVQELVDFRVDCDRDCLLVTVRQTGPACHTNRRSCFYTAV 106

GO:0000105 "histidine biosynthetic process" evidence=ISS

GO:0004635 "phosphoribosyl-AMP cyclohydrolase activity" evidence=ISS

TIGR_CMR|SO_2067 SO_2067 "phosphoribosyl-ATP pyrophosphatase/phosphoribosyl-AMP cyclohydrolase" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 42/94 (44%), Positives = 63/94 (67%)

Query:    59 WDNK-GLAVAIAQNVDTGAILMQGFANRDALATTISSRKATFYSRSRSTLWTKGETSQNF 117
             WD + GL  A+ QN  +G +LM G+ ++ AL  T+++   TF+SRS+  LWTKGETS + 
Sbjct:    16 WDKQDGLIPAVIQNHLSGKVLMLGYMDKAALEQTLATGDVTFFSRSKQRLWTKGETSGHT 75

Query:   118 INVQDIFLDCDRDSIIYLGKPDGPTCHTGSETCY 151
             + +  I  DCD DS++    P+GPTCH G+E+C+
Sbjct:    76 LKLVAIDKDCDNDSLLVQVLPNGPTCHKGTESCW 109

GO:0000105 "histidine biosynthetic process" evidence=ISS

GO:0004635 "phosphoribosyl-AMP cyclohydrolase activity" evidence=ISS

GO:0004636 "phosphoribosyl-ATP diphosphatase activity" evidence=ISS

TIGR_CMR|CHY_1091 CHY_1091 "histidine biosynthesis bifunctional protein HisIE" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
 Identities = 38/99 (38%), Positives = 63/99 (63%)

Query:    57 VKWDNKGLAVAIAQNVDTGAILMQGFANRDALATTISSRKATFYSRSRSTLWTKGETSQN 116
             +K+D KGL  A+ Q++DT  +LM  + N +++  ++ + +  FYSRSR+ LW KGETS N
Sbjct:     3 LKFDEKGLIPAVVQDIDTREVLMVAYMNEESVKKSLETGQTWFYSRSRNALWHKGETSGN 62

Query:   117 FINVQDIFLDCDRDSIIYLGKPDGPTCHTGSETCYYTSV 155
                + +I  DCD D ++   +  G  CHTG+ +C+Y ++
Sbjct:    63 TQEIVEIRYDCDADCLLIKVRQKGVACHTGNYSCFYRTL 101

GO:0000105 "histidine biosynthetic process" evidence=ISS

GO:0004635 "phosphoribosyl-AMP cyclohydrolase activity" evidence=ISS

GO:0004636 "phosphoribosyl-ATP diphosphatase activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.6.1	0.921
3rd Layer	3.5.4	0.921
3rd Layer	3.6.1.31	0.914
3rd Layer	3.5.4.19	0.914

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	196
PLN02346	271	PLN02346, PLN02346, histidine biosynthesis bifunct	5e-78
PRK02759	203	PRK02759, PRK02759, bifunctional phosphoribosyl-AM	3e-48
PRK00051	125	PRK00051, hisI, phosphoribosyl-AMP cyclohydrolase;	4e-42
COG0139	111	COG0139, HisI, Phosphoribosyl-AMP cyclohydrolase [	3e-41
pfam01502	75	pfam01502, PRA-CH, Phosphoribosyl-AMP cyclohydrola	3e-37

>gnl|CDD|215196 PLN02346, PLN02346, histidine biosynthesis bifunctional protein hisIE

 Score =  233 bits (597), Expect = 5e-78
 Identities = 102/144 (70%), Positives = 118/144 (81%)

Query: 22  CRDNDMKRNCLVFASSTESNSNPVLQSKVDRLLDSVKWDNKGLAVAIAQNVDTGAILMQG 81
           CR +         A+ +++ + P L+ KV+ LLDSVKWD+KGLAVAIAQNVDTGAILMQG
Sbjct: 12  CRRDRKISAASKAAAGSKTLAEPALEPKVESLLDSVKWDDKGLAVAIAQNVDTGAILMQG 71

Query: 82  FANRDALATTISSRKATFYSRSRSTLWTKGETSQNFINVQDIFLDCDRDSIIYLGKPDGP 141
           FANR+A++ TISSRKATFYSRSRS LWTKGETS NFINV DI+LDCDRDSIIYLG PDGP
Sbjct: 72  FANREAISATISSRKATFYSRSRSGLWTKGETSGNFINVHDIYLDCDRDSIIYLGTPDGP 131

Query: 142 TCHTGSETCYYTSVLDALKDQPVG 165
           TCHTG+ETCYYTSV DAL++    
Sbjct: 132 TCHTGAETCYYTSVDDALQNGGPH 155

Length = 271

>gnl|CDD|235067 PRK02759, PRK02759, bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein; Reviewed

 Score =  156 bits (396), Expect = 3e-48
 Identities = 52/118 (44%), Positives = 73/118 (61%), Gaps = 5/118 (4%)

Query: 53  LLDSVKWD-NKGLAVAIAQNVDTGAILMQGFANRDALATTISSRKATFYSRSRSTLWTKG 111
            ++ + +D N GL  AI Q+  TG +LM G+ NR+AL  T+ + + TF+SRS+  LWTKG
Sbjct: 4   QIEELDFDKNDGLIPAIVQDALTGEVLMLGYMNREALEKTLETGEVTFFSRSKQRLWTKG 63

Query: 112 ETSQNFINVQDIFLDCDRDSIIYLGKPDGPTCHTGSETCYYTSVLDALKDQPVGSFIS 169
           ETS N   V  I LDCD D+++ L +P GP CHTG+ +C+Y       K  P   F+S
Sbjct: 64  ETSGNTQKVVSIRLDCDNDTLLVLVEPIGPACHTGTRSCFY----REKKAAPPWDFLS 117

Length = 203

>gnl|CDD|234598 PRK00051, hisI, phosphoribosyl-AMP cyclohydrolase; Reviewed

 Score =  137 bits (348), Expect = 4e-42
 Identities = 45/109 (41%), Positives = 69/109 (63%)

Query: 51  DRLLDSVKWDNKGLAVAIAQNVDTGAILMQGFANRDALATTISSRKATFYSRSRSTLWTK 110
            ++LD +K+D  GL  AIAQ+ +TG +LM  + N +ALA T+ + +A ++SRSR  LW K
Sbjct: 1   PKILDRLKFDADGLVPAIAQDAETGEVLMVAWMNEEALAKTLETGRAHYWSRSRQKLWRK 60

Query: 111 GETSQNFINVQDIFLDCDRDSIIYLGKPDGPTCHTGSETCYYTSVLDAL 159
           GETS +   V ++ LDCD D+++   +  G  CHTG  +C+Y  +   L
Sbjct: 61  GETSGHVQKVHEVRLDCDGDAVLLKVEQVGAACHTGRRSCFYRKLEGGL 109

Length = 125

>gnl|CDD|223217 COG0139, HisI, Phosphoribosyl-AMP cyclohydrolase [Amino acid transport and metabolism]

 Score =  134 bits (340), Expect = 3e-41
 Identities = 49/105 (46%), Positives = 70/105 (66%), Gaps = 1/105 (0%)

Query: 53  LLDSVKWDNKGLAVAIAQNVDTGAILMQGFANRDALATTISSRKATFYSRSRSTLWTKGE 112
           LLD + +D  GL  AI Q+ +TG +LM  + N +ALA T+ + +A +YSRSR  LWTKGE
Sbjct: 7   LLDELDFDKDGLVPAIVQDAETGEVLMLAYMNEEALAKTLETGEAHYYSRSRQELWTKGE 66

Query: 113 TSQNFINVQDIFLDCDRDSIIYLGKP-DGPTCHTGSETCYYTSVL 156
           TS +   V +I LDCD D+++ L +   GP CHTG+ +C+Y +V 
Sbjct: 67  TSGHTQKVVEIRLDCDGDALLLLVEQIGGPACHTGTRSCFYRAVG 111

Length = 111

>gnl|CDD|201829 pfam01502, PRA-CH, Phosphoribosyl-AMP cyclohydrolase

 Score =  123 bits (311), Expect = 3e-37
 Identities = 34/75 (45%), Positives = 49/75 (65%)

Query: 79  MQGFANRDALATTISSRKATFYSRSRSTLWTKGETSQNFINVQDIFLDCDRDSIIYLGKP 138
           M  + N++AL  T+ + KA ++SRSR  LW KGETS N   V++I LDCD D+++   + 
Sbjct: 1   MLAYMNKEALEKTLETGKAHYFSRSRQRLWHKGETSGNTQKVKEIRLDCDGDALLVKVEQ 60

Query: 139 DGPTCHTGSETCYYT 153
            GP CHTG  +C+Y 
Sbjct: 61  VGPACHTGRRSCFYR 75

This enzyme catalyzes the third step in the histidine biosynthetic pathway. It requires Zn ions for activity. Length = 75

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	196
COG0139	111	HisI Phosphoribosyl-AMP cyclohydrolase [Amino acid	100.0
PRK00051	125	hisI phosphoribosyl-AMP cyclohydrolase; Reviewed	100.0
PRK02759	203	bifunctional phosphoribosyl-AMP cyclohydrolase/pho	100.0
PLN02346	271	histidine biosynthesis bifunctional protein hisIE	100.0
PF01502	75	PRA-CH: Phosphoribosyl-AMP cyclohydrolase; InterPr	100.0
KOG4311	359	consensus Histidinol dehydrogenase [Amino acid tra	100.0

>COG0139 HisI Phosphoribosyl-AMP cyclohydrolase [Amino acid transport and metabolism]

Probab=100.00  E-value=2e-57  Score=355.90  Aligned_cols=104  Identities=47%  Similarity=0.868  Sum_probs=100.2

Q ss_pred             HHhhccccCCCCeEEEEEEeCCCCcEEEEEecCHHHHHHHHHcCeEEEEeCCCCcceecCCCCCCeEEEEEeeecCCCCe
Q 029236           52 RLLDSVKWDNKGLAVAIAQNVDTGAILMQGFANRDALATTISSRKATFYSRSRSTLWTKGETSQNFINVQDIFLDCDRDS  131 (196)
Q Consensus        52 ~~l~~i~~d~~GLiPaIvQD~~tg~VLMlaymN~EAl~~Tl~TG~~~yySRSR~~lW~KGetSGn~Q~V~~I~~DCD~Da  131 (196)
                      .++..++|+++|||||||||+.||+|||+||||+|||++|++||++|||||||++||.|||||||+|+|++|++|||+||
T Consensus         6 ~~~~~~~~~~~gLvpaIvQd~~t~eVLMlaymN~eAl~kTleTg~~~y~SRSR~~lW~KGetSG~~q~v~~i~~DCD~Da   85 (111)
T COG0139           6 ALLDELDFDKDGLVPAIVQDAETGEVLMLAYMNEEALAKTLETGEAHYYSRSRQELWTKGETSGHTQKVVEIRLDCDGDA   85 (111)
T ss_pred             hhhhhcccCCCCeEEEEEEecCCCcEEEEEecCHHHHHHHHhcCeEEEEEcchhhheccccccCceEEEEEEEcCCCCCE
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeeCC-CCccCCCCccccccc
Q 029236          132 IIYLGKPDG-PTCHTGSETCYYTSV  155 (196)
Q Consensus       132 LL~~V~q~G-~aCHtG~~SCF~~~~  155 (196)
                      ||++|+|.| ||||||++||||+.+
T Consensus        86 ll~~V~q~gg~aCHtG~~SCF~~~~  110 (111)
T COG0139          86 LLLLVEQIGGPACHTGTRSCFYRAV  110 (111)
T ss_pred             EEEEEEeCCCCcccCCCcccccccC
Confidence            999999965 899999999999864

>PRK00051 hisI phosphoribosyl-AMP cyclohydrolase; Reviewed

Probab=100.00  E-value=2.4e-57  Score=361.64  Aligned_cols=105  Identities=42%  Similarity=0.810  Sum_probs=102.4

Q ss_pred             HHhhccccCCCCeEEEEEEeCCCCcEEEEEecCHHHHHHHHHcCeEEEEeCCCCcceecCCCCCCeEEEEEeeecCCCCe
Q 029236           52 RLLDSVKWDNKGLAVAIAQNVDTGAILMQGFANRDALATTISSRKATFYSRSRSTLWTKGETSQNFINVQDIFLDCDRDS  131 (196)
Q Consensus        52 ~~l~~i~~d~~GLiPaIvQD~~tg~VLMlaymN~EAl~~Tl~TG~~~yySRSR~~lW~KGetSGn~Q~V~~I~~DCD~Da  131 (196)
                      .+++.++||++|||||||||+.||+|||+||||+|||++||+||++|||||||++||+|||||||+|+|++|++|||+||
T Consensus         2 ~~~~~l~~~~~GLipaivqd~~tg~VLMlaymn~eAl~~Tl~tg~~~y~SRSR~~lW~KGetSG~~q~v~~i~~DCD~D~   81 (125)
T PRK00051          2 KILDRLKFDADGLVPAIAQDAETGEVLMVAWMNEEALAKTLETGRAHYWSRSRQKLWRKGETSGHVQKVHEVRLDCDGDA   81 (125)
T ss_pred             cHhhccccCCCCcEEEEEEECCCCCEEEEEEcCHHHHHHHHhcCcEEEEeCccCcccCCCCCcCCeEEEEEEEecCCCCE
Confidence            36778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeeCCCCccCCCCcccccccc
Q 029236          132 IIYLGKPDGPTCHTGSETCYYTSVL  156 (196)
Q Consensus       132 LL~~V~q~G~aCHtG~~SCF~~~~~  156 (196)
                      ||++|+|.|||||||++||||+++.
T Consensus        82 Ll~~V~q~G~aCHtg~~SCF~~~~~  106 (125)
T PRK00051         82 VLLKVEQVGAACHTGRRSCFYRKLE  106 (125)
T ss_pred             EEEEEEecCCcccCCCCCccceeec
Confidence            9999999999999999999999985

>PRK02759 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein; Reviewed

Probab=100.00  E-value=4.1e-55  Score=371.73  Aligned_cols=123  Identities=44%  Similarity=0.796  Sum_probs=114.3

Q ss_pred             HhhccccCCC-CeEEEEEEeCCCCcEEEEEecCHHHHHHHHHcCeEEEEeCCCCcceecCCCCCCeEEEEEeeecCCCCe
Q 029236           53 LLDSVKWDNK-GLAVAIAQNVDTGAILMQGFANRDALATTISSRKATFYSRSRSTLWTKGETSQNFINVQDIFLDCDRDS  131 (196)
Q Consensus        53 ~l~~i~~d~~-GLiPaIvQD~~tg~VLMlaymN~EAl~~Tl~TG~~~yySRSR~~lW~KGetSGn~Q~V~~I~~DCD~Da  131 (196)
                      +++.|+||++ |||||||||+.||+|||+||||+|||++|++||++|||||||++||+|||||||+|+|++|++|||+||
T Consensus         4 ~~~~l~~~~~~gLip~ivqd~~tg~vLml~ymn~eal~~Tl~tg~~~~~SRSr~~lW~KGetSG~~q~v~~i~~DCD~D~   83 (203)
T PRK02759          4 QIEELDFDKNDGLIPAIVQDALTGEVLMLGYMNREALEKTLETGEVTFFSRSKQRLWTKGETSGNTQKVVSIRLDCDNDT   83 (203)
T ss_pred             hhhccCcCCCCCcEEEEEEECCCCCEEEEEecCHHHHHHHHhcCcEEEEeCCCCcccCCCCCCCCeEEEEEEEecCCCCe
Confidence            5678999997 999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeeCCCCccCCCCccccccc----------------ccccccCCCCccccccccccccCCC
Q 029236          132 IIYLGKPDGPTCHTGSETCYYTSV----------------LDALKDQPVGSFISLAHTAVLFGIP  180 (196)
Q Consensus       132 LL~~V~q~G~aCHtG~~SCF~~~~----------------~~~~~~~~~g~~~a~~~~~~lf~~~  180 (196)
                      ||++|+|.|||||||++||||+.+                .++....|.|||     |++||...
T Consensus        84 ll~~V~~~G~aCHtg~~sCF~~~~~~~~~~~~L~~L~~~I~~Rk~~~pe~SY-----T~~L~~~G  143 (203)
T PRK02759         84 LLVLVEPIGPACHTGTRSCFYREKKAAPPWDFLSQLEQLIAERKNAPPEGSY-----TAKLFASG  143 (203)
T ss_pred             EEEEEEecCCcCCCCCCCCCCCcccccchhhHHHHHHHHHHHHHhCCCCCcH-----HHHHHhCc
Confidence            999999999999999999999953                113557788999     99999763

>PLN02346 histidine biosynthesis bifunctional protein hisIE

Probab=100.00  E-value=3.1e-54  Score=379.08  Aligned_cols=136  Identities=72%  Similarity=1.152  Sum_probs=120.3

Q ss_pred             CCCcccccccc-cc-cceeeccccCCCCCCcchhHHHHHhhccccCCCCeEEEEEEeCCCCcEEEEEecCHHHHHHHHHc
Q 029236           17 TGSDRCRDNDM-KR-NCLVFASSTESNSNPVLQSKVDRLLDSVKWDNKGLAVAIAQNVDTGAILMQGFANRDALATTISS   94 (196)
Q Consensus        17 ~~~~~~~~~~~-~~-~~i~~~s~~~~~~~~~~~~~~~~~l~~i~~d~~GLiPaIvQD~~tg~VLMlaymN~EAl~~Tl~T   94 (196)
                      -|..+|..+.. +. .....-|  .-..+++.+..++.+++.|+||++|||||||||+.||+||||||||+|||++||+|
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~gLipaivQd~~tg~VLml~ymn~eal~~Tl~t   84 (271)
T PLN02346          7 SPASPCRRDRKISAASKAAAGS--KTLAEPALEPKVESLLDSVKWDDKGLAVAIAQNVDTGAILMQGFANREAISATISS   84 (271)
T ss_pred             ccccccccchhhcccccccccc--cCccccccchhHHHHHHhcCcCCCCCEEEEEEECCCCCEEEEEecCHHHHHHHHhc
Confidence            36778866553 22 2222222  22345688999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEeCCCCcceecCCCCCCeEEEEEeeecCCCCeEEEEEeeCCCCccCCCCcccccc
Q 029236           95 RKATFYSRSRSTLWTKGETSQNFINVQDIFLDCDRDSIIYLGKPDGPTCHTGSETCYYTS  154 (196)
Q Consensus        95 G~~~yySRSR~~lW~KGetSGn~Q~V~~I~~DCD~DaLL~~V~q~G~aCHtG~~SCF~~~  154 (196)
                      |++|||||||++||+|||||||+|+|++|++|||+|+|||+|+|.||+||||++||||++
T Consensus        85 g~~~y~SRSR~~LW~KGetSG~~q~v~~i~~DCD~D~ll~~V~~~G~aCHtg~~SCF~~~  144 (271)
T PLN02346         85 RKATFYSRSRSGLWTKGETSGNFINVHDIYLDCDRDSIIYLGTPDGPTCHTGAETCYYTS  144 (271)
T ss_pred             CcEEEEeCCCCccccCCCCcCCeEEEEEEEecCCCCeEEEEEEecCCcccCCCCCCcCcc
Confidence            999999999999999999999999999999999999999999999999999999999985

>PF01502 PRA-CH: Phosphoribosyl-AMP cyclohydrolase; InterPro: IPR002496 Phosphoribosyl-AMP cyclohydrolase 3

Probab=100.00  E-value=7e-46  Score=273.81  Aligned_cols=75  Identities=47%  Similarity=0.914  Sum_probs=66.5

Q ss_pred             EEEecCHHHHHHHHHcCeEEEEeCCCCcceecCCCCCCeEEEEEeeecCCCCeEEEEEeeCCCCccCCCCccccc
Q 029236           79 MQGFANRDALATTISSRKATFYSRSRSTLWTKGETSQNFINVQDIFLDCDRDSIIYLGKPDGPTCHTGSETCYYT  153 (196)
Q Consensus        79 MlaymN~EAl~~Tl~TG~~~yySRSR~~lW~KGetSGn~Q~V~~I~~DCD~DaLL~~V~q~G~aCHtG~~SCF~~  153 (196)
                      |+||||+|||++||+||++|||||||++||+|||||||+|+|++|++|||+||||++|+|.||+||||++|||||
T Consensus         1 Mlaymn~eal~~Tl~tg~~~y~SRSR~~lW~KGetSG~~q~v~~i~~DCD~D~ll~~V~~~G~aCHtg~~SCF~r   75 (75)
T PF01502_consen    1 MLAYMNKEALEKTLETGRATYYSRSRNRLWRKGETSGNTQKVVEIRLDCDGDALLFKVEQVGPACHTGRRSCFYR   75 (75)
T ss_dssp             EEEEE-HHHHHHHHHHSB-EEEETTTTEEEETTTTTS--EEEEEEEE-TTSSEEEEEEEESS-SSTTSBSSS--E
T ss_pred             CceecCHHHHHHHHHhCcEEEEEccCCcEeeEECCCCCEEEEEEEEecCCCCeEEEEEEeCCCCccCCCCCCcCc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999996

5.4.19 from EC catalyses the third step in the histidine biosynthetic pathway: 5-phosphoribosyl-AMP + H2O = 5-(5-phospho-D-ribosylaminoformimino)-1-(5-phospho-ribosyl) imidazole-4-carboxamide It requires Zn2+ ions for activity [].; GO: 0004635 phosphoribosyl-AMP cyclohydrolase activity, 0000105 histidine biosynthetic process; PDB: 1ZPS_B.

>KOG4311 consensus Histidinol dehydrogenase [Amino acid transport and metabolism]

Probab=100.00  E-value=5.7e-41  Score=298.57  Aligned_cols=173  Identities=48%  Similarity=0.687  Sum_probs=143.7

Q ss_pred             Ccccccccccceeecc--CCCccccc---ccccc------cceeeccccCCCCCCcchhHHHHHhhccccCCC-CeEEEE
Q 029236            1 MAVSYSQCVQSLKVSL--TGSDRCRD---NDMKR------NCLVFASSTESNSNPVLQSKVDRLLDSVKWDNK-GLAVAI   68 (196)
Q Consensus         1 ~a~~~~~~~~~~~~~~--~~~~~~~~---~~~~~------~~i~~~s~~~~~~~~~~~~~~~~~l~~i~~d~~-GLiPaI   68 (196)
                      ||+|+.+-.|++-+++  .|.++-.+   -.|..      +-.+++=  ..++++....+++.+|+.++||+. ||+.++
T Consensus        78 ~~~Sq~A~~~~~~~s~~niPker~v~~e~g~F~~q~~v~~sfsv~~~--v~~K~~~k~~l~d~~L~~i~tDr~dgl~~tl  155 (359)
T KOG4311|consen   78 MAVSQNALAQSLARSSCNIPKERVVVEENGSFRDQKLVSRSFSVFAC--VDNKNIAKQALVDNLLDRIKTDRKDGLVATL  155 (359)
T ss_pred             HHHhHHHHHHHHHHhhccCCCcceecccCCccchHHHHhhccceeee--eccchHHHHHHHHHHHHHhccCCCCCeEEEE
Confidence            7889999999998888  44443211   12322      2222222  235567788899999999999975 665554


Q ss_pred             EEeCCCCcEEEEEecCHHHHHHHHHcCeEEEEeCCCCcceecCCCCCCeEEEEEeeecCCCCeEEEEEeeCCC-CccCCC
Q 029236           69 AQNVDTGAILMQGFANRDALATTISSRKATFYSRSRSTLWTKGETSQNFINVQDIFLDCDRDSIIYLGKPDGP-TCHTGS  147 (196)
Q Consensus        69 vQD~~tg~VLMlaymN~EAl~~Tl~TG~~~yySRSR~~lW~KGetSGn~Q~V~~I~~DCD~DaLL~~V~q~G~-aCHtG~  147 (196)
                      | -.++|.|||++|.||||+.+||.+|+++||||||++||.|||||||+|++.+|++|||+|||.|.|.|.|+ +||+|+
T Consensus       156 v-v~~~g~~Lglvysskes~a~ti~~g~gvy~SRsR~~lW~KGetSgn~q~ll~i~vDCD~D~l~f~v~q~g~gfCHl~t  234 (359)
T KOG4311|consen  156 V-VVDTGAVLGLVYSSKESLATTISSGKGVYFSRSRSTLWTKGETSGNFQNLLDIYVDCDRDSLIFLVTQDGPGFCHLGT  234 (359)
T ss_pred             E-ehhhhhhhhhhcccHHHHHHHHhcCcceEEecccceeeeccccCcCceeeEEEeeccCccceEEEEecCCCcccccCc
Confidence            4 45899999999999999999999999999999999999999999999999999999999999999999998 999999


Q ss_pred             Cccccccc----------ccccccCCCCccccccccccccCCCC
Q 029236          148 ETCYYTSV----------LDALKDQPVGSFISLAHTAVLFGIPE  181 (196)
Q Consensus       148 ~SCF~~~~----------~~~~~~~~~g~~~a~~~~~~lf~~~~  181 (196)
                      .+||+...          .++++.+|.|+|     |.|||+|+.
T Consensus       235 ~~Cfg~~~~gL~~LEs~l~~Rk~~aPeeSy-----TrRLftD~a  273 (359)
T KOG4311|consen  235 ETCFGTSVFGLYSLESILSKRKETAPEESY-----TRRLFTDDA  273 (359)
T ss_pred             ceeeeeechhhhhHHHHHHHhhhcCCchhh-----HHHhhCChH
Confidence            99999964          357889999999     999999975

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	196
1zps_A	138	Crystal Structure Of Methanobacterium Thermoautotro		7e-19

>pdb|1ZPS|A Chain A, Crystal Structure Of Methanobacterium Thermoautotrophicum Phosphoribosyl-Amp Cyclohydrolase Hisi Length = 138

Iteration: 1
 Score = 90.1 bits (222), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 37/92 (40%), Positives = 61/92 (66%)
Query: 64  LAVAIAQNVDTGAILMQGFANRDALATTISSRKATFYSRSRSTLWTKGETSQNFINVQDI 123
           L +A+AQ+ +TG +LM  + NR+AL  T+ +  A ++S SR  LW KGE+S +   V+D+
Sbjct: 23  LIIAVAQDHETGEVLMVAYMNREALRRTLETGTAHYWSTSRGKLWLKGESSGHVQRVKDV 82
Query: 124 FLDCDRDSIIYLGKPDGPTCHTGSETCYYTSV 155
            +DCD D+++   + +G  CHTG  +C+Y S+
Sbjct: 83  LVDCDGDAVVLKVEQEGGACHTGYRSCFYRSI 114

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	196
1zps_A	138	PRA-CH, phosphoribosyl-AMP cyclohydrolase; histidi	2e-44

>1zps_A PRA-CH, phosphoribosyl-AMP cyclohydrolase; histidine biosynthesis; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.168.1.1 Length = 138

 Score =  143 bits (362), Expect = 2e-44
 Identities = 37/100 (37%), Positives = 63/100 (63%)

Query: 56  SVKWDNKGLAVAIAQNVDTGAILMQGFANRDALATTISSRKATFYSRSRSTLWTKGETSQ 115
               + + L +A+AQ+ +TG +LM  + NR+AL  T+ +  A ++S SR  LW KGE+S 
Sbjct: 15  RHNINGEDLIIAVAQDHETGEVLMVAYMNREALRRTLETGTAHYWSTSRGKLWLKGESSG 74

Query: 116 NFINVQDIFLDCDRDSIIYLGKPDGPTCHTGSETCYYTSV 155
           +   V+D+ +DCD D+++   + +G  CHTG  +C+Y S+
Sbjct: 75  HVQRVKDVLVDCDGDAVVLKVEQEGGACHTGYRSCFYRSI 114

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	196
1zps_A	138	PRA-CH, phosphoribosyl-AMP cyclohydrolase; histidi	100.0

>1zps_A PRA-CH, phosphoribosyl-AMP cyclohydrolase; histidine biosynthesis; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.168.1.1

Probab=100.00  E-value=5.5e-57  Score=363.37  Aligned_cols=104  Identities=37%  Similarity=0.710  Sum_probs=100.7

Q ss_pred             HhhccccCCCCeEEEEEEeCCCCcEEEEEecCHHHHHHHHHcCeEEEEeCCCCcceecCCCCCCeEEEEEeeecCCCCeE
Q 029236           53 LLDSVKWDNKGLAVAIAQNVDTGAILMQGFANRDALATTISSRKATFYSRSRSTLWTKGETSQNFINVQDIFLDCDRDSI  132 (196)
Q Consensus        53 ~l~~i~~d~~GLiPaIvQD~~tg~VLMlaymN~EAl~~Tl~TG~~~yySRSR~~lW~KGetSGn~Q~V~~I~~DCD~DaL  132 (196)
                      +...++||++|||||||||+.||+|||+||||+|||++||+||++|||||||++||+|||||||+|+|++|++|||+|+|
T Consensus        12 ~~~~~~~~~~GLipaIvQd~~tg~VLMlayMN~EAl~~Tl~tg~~~y~SRSR~~LW~KGetSG~~Q~v~~i~~DCD~D~L   91 (138)
T 1zps_A           12 LNFRHNINGEDLIIAVAQDHETGEVLMVAYMNREALRRTLETGTAHYWSTSRGKLWLKGESSGHVQRVKDVLVDCDGDAV   91 (138)
T ss_dssp             SCCCCCSSSCCCEEEEEEETTTCCEEEEEEECHHHHHHHHHHSBCEEEETTTTEEEETTTTTSCCEEEEEEEECTTSSEE
T ss_pred             hhcccccCCCCcEEEEEEECCCCCEEEEEecCHHHHHHHHhcCcEEEEcCCCCccccCccCCCCcEEEEEEEecCCCCEE
Confidence            44568999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeeCCCCccCCCCcccccccc
Q 029236          133 IYLGKPDGPTCHTGSETCYYTSVL  156 (196)
Q Consensus       133 L~~V~q~G~aCHtG~~SCF~~~~~  156 (196)
                      |++|+|.|||||||++||||+++.
T Consensus        92 L~~V~q~G~aCHtG~~SCF~~~~~  115 (138)
T 1zps_A           92 VLKVEQEGGACHTGYRSCFYRSID  115 (138)
T ss_dssp             EEEEEESSCSSTTSBSSSCCEEEE
T ss_pred             EEEEEecCCcccCCCCCcCccccc
Confidence            999999999999999999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	196
d1zpsa1	124	b.168.1.1 (A:8-131) Phosphoribosyl-AMP cyclohydrol	1e-31

>d1zpsa1 b.168.1.1 (A:8-131) Phosphoribosyl-AMP cyclohydrolase HisI {Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 124

class: All beta proteins
fold: HisI-like
superfamily: HisI-like
family: HisI-like
domain: Phosphoribosyl-AMP cyclohydrolase HisI
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score =  109 bits (273), Expect = 1e-31
 Identities = 37/98 (37%), Positives = 63/98 (64%)

Query: 58  KWDNKGLAVAIAQNVDTGAILMQGFANRDALATTISSRKATFYSRSRSTLWTKGETSQNF 117
             + + L +A+AQ+ +TG +LM  + NR+AL  T+ +  A ++S SR  LW KGE+S + 
Sbjct: 10  NINGEDLIIAVAQDHETGEVLMVAYMNREALRRTLETGTAHYWSTSRGKLWLKGESSGHV 69

Query: 118 INVQDIFLDCDRDSIIYLGKPDGPTCHTGSETCYYTSV 155
             V+D+ +DCD D+++   + +G  CHTG  +C+Y S+
Sbjct: 70  QRVKDVLVDCDGDAVVLKVEQEGGACHTGYRSCFYRSI 107

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	196
d1zpsa1	124	Phosphoribosyl-AMP cyclohydrolase HisI {Methanobac	100.0

>d1zpsa1 b.168.1.1 (A:8-131) Phosphoribosyl-AMP cyclohydrolase HisI {Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All beta proteins
fold: HisI-like
superfamily: HisI-like
family: HisI-like
domain: Phosphoribosyl-AMP cyclohydrolase HisI
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=100.00  E-value=1.1e-56  Score=354.41  Aligned_cols=100  Identities=37%  Similarity=0.751  Sum_probs=96.4

Q ss_pred             cccCCCCeEEEEEEeCCCCcEEEEEecCHHHHHHHHHcCeEEEEeCCCCcceecCCCCCCeEEEEEeeecCCCCeEEEEE
Q 029236           57 VKWDNKGLAVAIAQNVDTGAILMQGFANRDALATTISSRKATFYSRSRSTLWTKGETSQNFINVQDIFLDCDRDSIIYLG  136 (196)
Q Consensus        57 i~~d~~GLiPaIvQD~~tg~VLMlaymN~EAl~~Tl~TG~~~yySRSR~~lW~KGetSGn~Q~V~~I~~DCD~DaLL~~V  136 (196)
                      .++|.+|||||||||+.||+|||+||||+|||++||+||++|||||||++||+|||||||+|+|++|++|||+||||++|
T Consensus         9 ~~~n~~gLiP~ivqd~~tg~VLMlaymN~eAl~~Tl~tg~~~y~SRSR~~lW~KGetSG~~q~v~~i~~DCD~D~ll~~V   88 (124)
T d1zpsa1           9 HNINGEDLIIAVAQDHETGEVLMVAYMNREALRRTLETGTAHYWSTSRGKLWLKGESSGHVQRVKDVLVDCDGDAVVLKV   88 (124)
T ss_dssp             CCSSSCCCEEEEEEETTTCCEEEEEEECHHHHHHHHHHSBCEEEETTTTEEEETTTTTSCCEEEEEEEECTTSSEEEEEE
T ss_pred             cCCCCCCceeEEEEECCCCCEEEEEEcCHHHHHHHHhcCcEEEEEhhhhhhhhhhhhcCCeeEEEEEEcCCCCCEEEEEE
Confidence            34456789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeCCCCccCCCCcccccccc
Q 029236          137 KPDGPTCHTGSETCYYTSVL  156 (196)
Q Consensus       137 ~q~G~aCHtG~~SCF~~~~~  156 (196)
                      +|.|||||||++||||+++.
T Consensus        89 ~q~G~aCHtG~~SCFyr~~~  108 (124)
T d1zpsa1          89 EQEGGACHTGYRSCFYRSID  108 (124)
T ss_dssp             EESSCSSTTSBSSSCCEEEE
T ss_pred             ecccceeecCCCCCcceEec
Confidence            99999999999999999985