Citrus Sinensis ID: 029270

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190------
Protein Sequence
MTVSAPTPVAQVHTIECNSFLSSKLKPRSNRLFPAKNVSTIVAMASRKKVNKYDANWEKQWFGAGIFCEGSEEVEVDMFKKLEQRKVLSNVEKAGLLSKAEELGVTLSSIEKLGLFSKAEELGLLSLLEKLASASPSTLASASLPIFLAAVAAVVVIPDDSVTLVVVQAVLAAALGVGAAGLFVGSVVLGGLQEAD
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccEEEEEccccccccccHHHHHHccccEEEEccccccccHHHHHHHHHHHHHHHHHHcHHHHHHHccccHHHHHHHcHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mtvsaptpvaqVHTIECNsflssklkprsnrlfpaknVSTIVAMASRKKVNKYDANwekqwfgagifcegsEEVEVDMFKKLEQRKVLSNVEKAGLLSKAEELGVTLSSIEKLGLFSKAEELGLLSLLEKLasaspstlasaSLPIFLAAVAAVVVIPDDSVTLVVVQAVLAAALGVGAAGLFVGSVVLGGLQEAD
Flexible Loop (DISEMBL)
mtvsaptpvaqvhtIECNSflssklkprsnrlfpaknvsTIVAMASRKKVNKYDANWEKQWFGAGIFCEGSEEVEVDMFKKLEQRKVLSNVEKAGLLSKAEELGVTLSSIEKLGLFSKAEELGLLSLLEKLASASPSTLASASLPIFLAAVAAVVVIPDDSVTLVVVQAVLAAALGVGAAGLFVGSVVLGGLQEAD
Low Complexity Region (SEG)
MTVSAPTPVAQVHTIECNSFLSSKLKPRSNRLFPAKNVSTIVAMASRKKVNKYDANWEKQWFGAGIFCEGSEEVEVDMFKKLEQRKVLSNVEKAGLLSKAEELGVTLSSIEKLGLFskaeelgllslleklasaspstlasaslpIFLaavaavvvIPDDSvtlvvvqavlaaalgvgaaglfvgsvvlgglQEAD
Disordered region (IsUnstruct)
***********VHTIECNSFL**********LFPAKNVSTIVAMASRKKVNKYDANWEKQWFGAGIFCEGSEEVEVDMFKKLEQRKVLSNVEKAGLLSKAEELGVTLSSIEKLGLFSKAEELGLLSLLEKLASASPSTLASASLPIFLAAVAAVVVIPDDSVTLVVVQAVLAAALGVGAAGLFVGSVVLGG*****
Disordered Region (DISOPRED)
***********************************************************QWFGAGIFCEGSEEVEVDMFKKLEQRKVLSNVE**GLLSKAEELGVTLSSIEKLGLFSKAEELGLLSLLEKLASASPSTLASASLPIFLAAVAAVVVIPDDSVTLVVVQAVLAAALGVGAAGLFVGSVVLGGLQ***
Disordered Region (DISEMBL)
*********AQVHTIECNSFLSSKLKPRSNRLFPAKNVSTIVAMASRKKVNKYDANWEKQWFGAGIFCEGSEEVEVDMFKKLEQRKVLSNVEKAGLLSKAEELGVTLSSIEKLGLFSKAEELGLLSLLEKLASASPSTLASASLPIFLAAVAAVVVIPDDSVTLVVVQAVLAAALGVGAAGLFVGSVVLGGLQEAD
Disordered Region (DISPRO)
*******************FLSSK*K*RSNRLFPAKNVSTIVAMASRKKVNKYDANWEKQWFGAGIFCEGSEEVEVDMFKKLEQRKVLSNVEKAGLLSKAEELGVTLSSIEKLGLFSKAEELGLLSLLEKLASASPSTLASASLPIFLAAVAAVVVIPDDSVTLVVVQAVLAAALGVGAAGLFVGSVVLGGLQ***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTVSAPTPVAQVHTIECNSFLSSKLKPRSNRLFPAKNVSTIVAMASRKKVNKYDANWEKQWFGAGIFCEGSEEVEVDMFKKLEQRKVLSNVEKAGLLSKAEELGVTLSSIEKLGLFSKAEELGLLSLLEKLASASPSTLASASLPIFLAAVAAVVVIPDDSVTLVVVQAVLAAALGVGAAGLFVGSVVLGGLQEAD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	196
225456666	193	PREDICTED: uncharacterized protein LOC10	0.984	1.0	0.688	3e-67
255540911	197	conserved hypothetical protein [Ricinus	0.979	0.974	0.721	5e-58
357135352	189	PREDICTED: uncharacterized protein LOC10	0.831	0.862	0.674	3e-55
116791201	209	unknown [Picea sitchensis]	0.785	0.736	0.681	1e-52
118489706	197	unknown [Populus trichocarpa x Populus d	0.989	0.984	0.723	2e-52
336309245	195	hypothetical protein [Brassica napus]	0.974	0.979	0.655	4e-51
336309239	195	hypothetical protein [Brassica napus] gi	0.969	0.974	0.646	1e-50
356508596	194	PREDICTED: uncharacterized protein LOC10	0.989	1.0	0.693	2e-50
336309241	197	hypothetical protein [Brassica napus] gi	0.979	0.974	0.646	2e-49
224124138	156	predicted protein [Populus trichocarpa]	0.795	1.0	0.833	2e-49

>gi|225456666|ref|XP_002271953.1| PREDICTED: uncharacterized protein LOC100250168 [Vitis vinifera] gi|147802714|emb|CAN62049.1| hypothetical protein VITISV_012441 [Vitis vinifera] gi|297734028|emb|CBI15275.3| unnamed protein product [Vitis vinifera]

 Score =  260 bits (664), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 135/196 (68%), Positives = 161/196 (82%), Gaps = 3/196 (1%)

Query: 1   MTVSAPTPVAQVHTIECNSFLSSKLKPRSNRLFPAKNVSTIVAMASRKKVNKYDANWEKQ 60
           M V+  +P A +  +E N + +   K R  R FPAK    I+AMAS+KKVN+YD NW+K+
Sbjct: 1   MAVTTASPAAFLRKLEHNLYPT---KSRFRRDFPAKKPLRILAMASKKKVNRYDENWKKE 57

Query: 61  WFGAGIFCEGSEEVEVDMFKKLEQRKVLSNVEKAGLLSKAEELGVTLSSIEKLGLFSKAE 120
           WFGAGIF EGSEEVEVD+FK LE++KVLSNVEK+GLLSKAEELG TLSSIEKLG+FSKAE
Sbjct: 58  WFGAGIFVEGSEEVEVDVFKNLEKKKVLSNVEKSGLLSKAEELGFTLSSIEKLGVFSKAE 117

Query: 121 ELGLLSLLEKLASASPSTLASASLPIFLAAVAAVVVIPDDSVTLVVVQAVLAAALGVGAA 180
           +LGLLSLLEK AS SPS LASA+LPIF+AA+AA+V+IPDDS  L+ VQA++A AL VGA 
Sbjct: 118 DLGLLSLLEKAASFSPSALASAALPIFVAAIAAIVLIPDDSAALIAVQALIAGALVVGAT 177

Query: 181 GLFVGSVVLGGLQEAD 196
           GL VGSVVLGGLQEA+
Sbjct: 178 GLVVGSVVLGGLQEAE 193

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255540911|ref|XP_002511520.1| conserved hypothetical protein [Ricinus communis] gi|223550635|gb|EEF52122.1| conserved hypothetical protein [Ricinus communis]

 Score =  229 bits (584), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 140/194 (72%), Positives = 161/194 (82%), Gaps = 2/194 (1%)

Query: 3   VSAPTPVAQVHTIECNSFLSSKLKPRSNRLFPAKNVSTIVAMASRKKVNKYDANWEKQWF 62
           V+ P+  A +  ++ +   S    PR +R FPAK   TIVAMA +KKVNKYD  W+K+WF
Sbjct: 6   VAPPSSAANLRPLQRHPSFSPS--PRFSRRFPAKQSLTIVAMAPQKKVNKYDDGWQKKWF 63

Query: 63  GAGIFCEGSEEVEVDMFKKLEQRKVLSNVEKAGLLSKAEELGVTLSSIEKLGLFSKAEEL 122
           GAGIF E SEE+E+D+FKKLE+RKVLSNVEKAGLLSKAEELG+TLSSIEKLG+FSKAEEL
Sbjct: 64  GAGIFYESSEELEMDVFKKLEKRKVLSNVEKAGLLSKAEELGITLSSIEKLGVFSKAEEL 123

Query: 123 GLLSLLEKLASASPSTLASASLPIFLAAVAAVVVIPDDSVTLVVVQAVLAAALGVGAAGL 182
           GLLSLLEK AS SPS LASA+LP+F+AA+AAVV+IPDDSV LV  QAVLA  L VGAAGL
Sbjct: 124 GLLSLLEKTASLSPSILASAALPVFVAALAAVVIIPDDSVGLVAAQAVLAGTLVVGAAGL 183

Query: 183 FVGSVVLGGLQEAD 196
           FVGSVVLGGLQEAD
Sbjct: 184 FVGSVVLGGLQEAD 197

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357135352|ref|XP_003569274.1| PREDICTED: uncharacterized protein LOC100826971 [Brachypodium distachyon]

 Score =  220 bits (560), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 114/169 (67%), Positives = 131/169 (77%), Gaps = 6/169 (3%)

Query: 28  RSNRLFPAKNVSTIVAMASRKKVNKYDANWEKQWFGAGIFCEGSEEVEVDMFKKLEQRKV 87
           +S R F       + AMA + KVNKYD  W KQWFGAGIF EGSEE  VD+FKKLE+RKV
Sbjct: 27  KSRRHF------KVTAMAPKNKVNKYDEGWSKQWFGAGIFAEGSEEASVDVFKKLEKRKV 80

Query: 88  LSNVEKAGLLSKAEELGVTLSSIEKLGLFSKAEELGLLSLLEKLASASPSTLASASLPIF 147
           LS VEKAGLLSKAEELGVTLSS+EKLGL SKAE+LGLLSL+E  A+ SP+ LAS SLP+ 
Sbjct: 81  LSTVEKAGLLSKAEELGVTLSSLEKLGLLSKAEDLGLLSLVETAATVSPAVLASLSLPLL 140

Query: 148 LAAVAAVVVIPDDSVTLVVVQAVLAAALGVGAAGLFVGSVVLGGLQEAD 196
           +AA+  VV++PDDS  LV +Q V+A     GAAGLFVGSVVL GLQEAD
Sbjct: 141 VAAIGTVVLVPDDSSLLVTLQTVVATLFAAGAAGLFVGSVVLDGLQEAD 189

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116791201|gb|ABK25893.1| unknown [Picea sitchensis]

 Score =  211 bits (537), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 105/154 (68%), Positives = 128/154 (83%)

Query: 41  IVAMASRKKVNKYDANWEKQWFGAGIFCEGSEEVEVDMFKKLEQRKVLSNVEKAGLLSKA 100
           I+AMA +KKVNKYD NW+KQWFGAGIF EG E+V+VD+ KKLE+RKVLS VEKAGLLSKA
Sbjct: 56  ILAMAPKKKVNKYDDNWKKQWFGAGIFLEGDEDVDVDIIKKLEKRKVLSGVEKAGLLSKA 115

Query: 101 EELGVTLSSIEKLGLFSKAEELGLLSLLEKLASASPSTLASASLPIFLAAVAAVVVIPDD 160
           +ELG++LSSIEK+GL SKAE+LGLLSL EK+AS SP+ +AS SLP+ +AA+A +V+IPDD
Sbjct: 116 DELGLSLSSIEKMGLLSKAEDLGLLSLAEKVASISPAAMASVSLPLVVAAIATIVLIPDD 175

Query: 161 SVTLVVVQAVLAAALGVGAAGLFVGSVVLGGLQE 194
           S  L++ Q  LAA   V A GLF  S+VL GLQE
Sbjct: 176 SAGLLIAQNFLAAIFAVSAVGLFGASIVLSGLQE 209

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489706|gb|ABK96654.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  210 bits (535), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 144/199 (72%), Positives = 158/199 (79%), Gaps = 5/199 (2%)

Query: 1   MTVSAP--TPVAQVHTIECNSFLSSKLKPRSNRLFPAKNVS-TIVAMASRKKVNKYDANW 57
           M V AP  T  A +       FL+SK   R     P K ++ TIVAMA +KKVNKYD NW
Sbjct: 1   MAVRAPLITSAAYLRGTNGPHFLTSK--SRFGLQSPTKQLALTIVAMAPQKKVNKYDGNW 58

Query: 58  EKQWFGAGIFCEGSEEVEVDMFKKLEQRKVLSNVEKAGLLSKAEELGVTLSSIEKLGLFS 117
           +KQW+GAGIF E SEEVE D+FKKLE+RKVLSNVEKAGLLSKAEELGVTLSSIEKLG+FS
Sbjct: 59  KKQWYGAGIFYEDSEEVEFDVFKKLEKRKVLSNVEKAGLLSKAEELGVTLSSIEKLGVFS 118

Query: 118 KAEELGLLSLLEKLASASPSTLASASLPIFLAAVAAVVVIPDDSVTLVVVQAVLAAALGV 177
           KAE+LGLLSLLEK AS SPSTLASA+LPI +AAV A+VVIPDDS  LV  QAVLA ALGV
Sbjct: 119 KAEQLGLLSLLEKTASVSPSTLASAALPILVAAVVAIVVIPDDSAGLVAAQAVLAGALGV 178

Query: 178 GAAGLFVGSVVLGGLQEAD 196
           GAAGL VGS VLGGLQEAD
Sbjct: 179 GAAGLLVGSFVLGGLQEAD 197

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|336309245|gb|AEI52299.1| hypothetical protein [Brassica napus]

 Score =  206 bits (524), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 131/200 (65%), Positives = 158/200 (79%), Gaps = 9/200 (4%)

Query: 1   MTVSAPTPVAQVHTIECNSFLSSKLKPRSNRLF-PAK---NVSTIVAMASRKKVNKYDAN 56
           M V+AP     + +     FLS+ + PR  R + P K   +  ++VAMA +KKVNKYDA 
Sbjct: 1   MAVNAP-----ISSHPRTQFLSNPVLPRFQRSYSPVKAPASAFSVVAMAPQKKVNKYDAK 55

Query: 57  WEKQWFGAGIFCEGSEEVEVDMFKKLEQRKVLSNVEKAGLLSKAEELGVTLSSIEKLGLF 116
           W+KQW+GAG+F EGSEEV VD+FKKLE+RKVLSNVEK+GLLSKAE+LG+TLSS+EKLG+F
Sbjct: 56  WKKQWYGAGLFFEGSEEVNVDVFKKLEKRKVLSNVEKSGLLSKAEDLGLTLSSLEKLGVF 115

Query: 117 SKAEELGLLSLLEKLASASPSTLASASLPIFLAAVAAVVVIPDDSVTLVVVQAVLAAALG 176
           SKAEELGLLSLLE LAS SP+ LASA+LP   AA+ A+V+IPDDS TLVV Q+VLA ALG
Sbjct: 116 SKAEELGLLSLLETLASTSPAVLASAALPALTAAIVAIVLIPDDSTTLVVAQSVLAGALG 175

Query: 177 VGAAGLFVGSVVLGGLQEAD 196
           +GA  L VGSVVL GLQEAD
Sbjct: 176 LGAVVLLVGSVVLDGLQEAD 195

Source: Brassica napus

Species: Brassica napus

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|336309239|gb|AEI52296.1| hypothetical protein [Brassica napus] gi|338762822|gb|AEI98612.1| hypothetical protein [Brassica napus]

 Score =  204 bits (520), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 130/201 (64%), Positives = 157/201 (78%), Gaps = 11/201 (5%)

Query: 1   MTVSAPTPVAQVHTIECNSFLSSKLKPRSNRLF-----PAKNVSTIVAMASRKKVNKYDA 55
           M V+AP     + +     FLS+++ PR  R +     PA   S +V+MA +KKVNKYDA
Sbjct: 1   MAVNAP-----ISSHPRTQFLSNRVLPRFQRSYSTVKAPASAFS-VVSMAPQKKVNKYDA 54

Query: 56  NWEKQWFGAGIFCEGSEEVEVDMFKKLEQRKVLSNVEKAGLLSKAEELGVTLSSIEKLGL 115
            W+KQW+GAG+F EGSEEV VD+FKKLE+RKVLSNVEK+GLLSKAE+LG+TLSS+EKLG+
Sbjct: 55  KWKKQWYGAGLFFEGSEEVNVDVFKKLEKRKVLSNVEKSGLLSKAEDLGLTLSSLEKLGV 114

Query: 116 FSKAEELGLLSLLEKLASASPSTLASASLPIFLAAVAAVVVIPDDSVTLVVVQAVLAAAL 175
           FSKAEELGLLSLLE LAS SP+ LASA+LP   AA+ A+V+IPDDS TLVV Q+VLA AL
Sbjct: 115 FSKAEELGLLSLLETLASTSPAVLASAALPALTAAIVAIVLIPDDSTTLVVAQSVLAGAL 174

Query: 176 GVGAAGLFVGSVVLGGLQEAD 196
            +GA  L VGSVVL GLQEAD
Sbjct: 175 ALGAVVLLVGSVVLDGLQEAD 195

Source: Brassica napus

Species: Brassica napus

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508596|ref|XP_003523041.1| PREDICTED: uncharacterized protein LOC100816458 [Glycine max]

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 136/196 (69%), Positives = 157/196 (80%), Gaps = 2/196 (1%)

Query: 1   MTVSAPTPVAQVHTIECNSFLSSKLKPRSNRLFPAKNVSTIVAMASRKKVNKYDANWEKQ 60
           M V A +    +  I  N   SS    RS     A+   T+ AMA +KKVNKY+  W+K+
Sbjct: 1   MAVPATSSAPVLRPIRTNHSFSSPF--RSLPSPAARKPLTVFAMAPKKKVNKYNDKWKKE 58

Query: 61  WFGAGIFCEGSEEVEVDMFKKLEQRKVLSNVEKAGLLSKAEELGVTLSSIEKLGLFSKAE 120
           WFGAGIF EGSEEVEVD+FKK+E+RKVLSNVEKAGLLSKAE+LG TLSSIEKLG+FSKAE
Sbjct: 59  WFGAGIFYEGSEEVEVDVFKKIEKRKVLSNVEKAGLLSKAEDLGFTLSSIEKLGVFSKAE 118

Query: 121 ELGLLSLLEKLASASPSTLASASLPIFLAAVAAVVVIPDDSVTLVVVQAVLAAALGVGAA 180
           ELGLLSLL++ AS SPS LASA+LP F+AA+AA+V+IPDDS TLV VQAV+AAALGVGA 
Sbjct: 119 ELGLLSLLDRAASFSPSLLASAALPAFVAAIAAIVLIPDDSATLVAVQAVVAAALGVGAV 178

Query: 181 GLFVGSVVLGGLQEAD 196
           GLFVGSVVLGGLQEAD
Sbjct: 179 GLFVGSVVLGGLQEAD 194

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|336309241|gb|AEI52297.1| hypothetical protein [Brassica napus] gi|338762826|gb|AEI98614.1| hypothetical protein [Brassica napus]

 Score =  201 bits (510), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 130/201 (64%), Positives = 153/201 (76%), Gaps = 9/201 (4%)

Query: 1   MTVSAP--TPVAQVHTIECNSFLSSKLKPRSNRLFPAKNVS---TIVAMASRKKVNKYDA 55
           M V+AP  +P A   T     FLS+ + PR  R + A       ++V+MA +KKVNKYDA
Sbjct: 1   MAVNAPISSPAAHPRT----QFLSNPVLPRFRRSYSAVKSPAAFSVVSMAPQKKVNKYDA 56

Query: 56  NWEKQWFGAGIFCEGSEEVEVDMFKKLEQRKVLSNVEKAGLLSKAEELGVTLSSIEKLGL 115
            W+KQW+GAG+F EGSEEV VD+FK LE+RKVLSNVEK+GLLSKAE+LGVTLSS+EKLG+
Sbjct: 57  KWKKQWYGAGLFFEGSEEVNVDVFKNLEKRKVLSNVEKSGLLSKAEDLGVTLSSLEKLGV 116

Query: 116 FSKAEELGLLSLLEKLASASPSTLASASLPIFLAAVAAVVVIPDDSVTLVVVQAVLAAAL 175
           FSKAEELGLLSLLE LA  SP+ LASA+LP   AA+ AVV+IPDDS TLVV QAVL  A 
Sbjct: 117 FSKAEELGLLSLLETLAGTSPAVLASAALPALTAAIVAVVLIPDDSTTLVVAQAVLGGAF 176

Query: 176 GVGAAGLFVGSVVLGGLQEAD 196
            +GA  L VGSVVL GLQEAD
Sbjct: 177 ALGAVVLLVGSVVLDGLQEAD 197

Source: Brassica napus

Species: Brassica napus

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224124138|ref|XP_002330114.1| predicted protein [Populus trichocarpa] gi|222871248|gb|EEF08379.1| predicted protein [Populus trichocarpa]

 Score =  201 bits (510), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 130/156 (83%), Positives = 140/156 (89%)

Query: 41  IVAMASRKKVNKYDANWEKQWFGAGIFCEGSEEVEVDMFKKLEQRKVLSNVEKAGLLSKA 100
           IVAMA +KKVNKYD NW+KQW+GAGIF E SEEVE D+FKKLE+RKVLSNVEKAGLLSKA
Sbjct: 1   IVAMAPQKKVNKYDGNWKKQWYGAGIFYEDSEEVEFDVFKKLEKRKVLSNVEKAGLLSKA 60

Query: 101 EELGVTLSSIEKLGLFSKAEELGLLSLLEKLASASPSTLASASLPIFLAAVAAVVVIPDD 160
           EELGVTLSSIEKLG+FSKAE+LGLLSLLEK AS SPSTLASA+LPI +AAV A+VVIPDD
Sbjct: 61  EELGVTLSSIEKLGVFSKAEQLGLLSLLEKTASVSPSTLASAALPILVAAVVAIVVIPDD 120

Query: 161 SVTLVVVQAVLAAALGVGAAGLFVGSVVLGGLQEAD 196
           S  LV  QAVLA ALGVGAAGL VGS VLGGLQEAD
Sbjct: 121 SAGLVAAQAVLAGALGVGAAGLLVGSFVLGGLQEAD 156

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	196
TAIR|locus:2027257	198	AT1G74730 "AT1G74730" [Arabido	0.561	0.555	0.613	1.1e-30
TAIR|locus:2142848	158	AT5G08050 "AT5G08050" [Arabido	0.209	0.259	0.536	4.3e-06

TAIR|locus:2027257 AT1G74730 "AT1G74730" [Arabidopsis thaliana (taxid:3702)]

 Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
 Identities = 73/119 (61%), Positives = 92/119 (77%)

Query:     3 VSAP--TPVAQVHTIECNSFLSSKLKPRSNRLFPA-KNVST--IVAMASRKKVNKYDANW 57
             V AP  +P AQ+ T     FLS+ + PR  R F   K+ +T  +VAMA +KKVNKYDA W
Sbjct:     4 VGAPISSPAAQLQT----QFLSNPILPRFRRSFSTGKSPATFSVVAMAPQKKVNKYDAKW 59

Query:    58 EKQWFGAGIFCEGSEEVEVDMFKKLEQRKVLSNVEKAGLLSKAEELGVTLSSIEKLGLF 116
             +KQW+GAG+F EGSE++ VD+FKKLE+RKVLSNVEK+GLLSKAE LG+TLSS+EKL +F
Sbjct:    60 KKQWYGAGLFFEGSEQINVDVFKKLEKRKVLSNVEKSGLLSKAEGLGLTLSSLEKLKVF 118

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

TAIR|locus:2142848 AT5G08050 "AT5G08050" [Arabidopsis thaliana (taxid:3702)]

 Score = 106 (42.4 bits), Expect = 4.3e-06, P = 4.3e-06
 Identities = 22/41 (53%), Positives = 32/41 (78%)

Query:    75 EVDMFKKLEQRKVLSNVEKAGLLSKAEELGVTLSSIEKLGL 115
             +V +  ++EQ K+L+  EKAGLLS AE+ G +LS+IE+LGL
Sbjct:    39 QVKLLTRVEQLKLLTKAEKAGLLSLAEKSGFSLSTIERLGL 79


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.130   0.365    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      196       128   0.00091  102 3  11 23  0.42    31
                                                     29  0.41    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  581 (62 KB)
  Total size of DFA:  128 KB (2081 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.00u 0.12s 13.12t   Elapsed:  00:00:00
  Total cpu time:  13.00u 0.12s 13.12t   Elapsed:  00:00:00
  Start:  Fri May 10 12:46:21 2013   End:  Fri May 10 12:46:21 2013

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0080167 "response to karrikin" evidence=IEP

GO:0009658 "chloroplast organization" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IMP

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0009773 "photosynthetic electron transport in photosystem I" evidence=RCA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00000090001	SubName- Full=Putative uncharacterized protein (Chromosome chr17 scaffold_101, whole genome shotgun sequence); (193 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00034383001	SubName- Full=Putative uncharacterized protein (Chromosome chr9 scaffold_7, whole genome shotgu [...] (144 aa)				•					0.436
	GSVIVG00002992001	SubName- Full=Chromosome chr10 scaffold_138, whole genome shotgun sequence; (289 aa)				•					0.433
	GSVIVG00037644001	SubName- Full=Chromosome chr9 scaffold_90, whole genome shotgun sequence; (395 aa)				•					0.421
	GSVIVG00036212001	SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (397 aa)				•					0.420
	GSVIVG00015393001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (270 aa)				•					0.420
	GSVIVG00038863001	SubName- Full=Chromosome chr8 scaffold_99, whole genome shotgun sequence; (370 aa)				•					0.419
	GSVIVG00003851001	SubName- Full=Chromosome chr8 scaffold_150, whole genome shotgun sequence; (518 aa)				•					0.417
	GSVIVG00017591001	SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (399 aa)				•					0.416
	GSVIVG00020753001	SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (448 aa)				•					0.414
	GSVIVG00028499001	RecName- Full=Photosystem II reaction center psb28 protein; (179 aa)				•					0.413

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	196
pfam06549	116	pfam06549, DUF1118, Protein of unknown function (D	4e-44

>gnl|CDD|191553 pfam06549, DUF1118, Protein of unknown function (DUF1118)

 Score =  142 bits (360), Expect = 4e-44
 Identities = 83/116 (71%), Positives = 95/116 (81%)

Query: 81  KLEQRKVLSNVEKAGLLSKAEELGVTLSSIEKLGLFSKAEELGLLSLLEKLASASPSTLA 140
            LE+ KVLS VEKAGLLSKAEELG+TLSSIEKLGL SKAE+LGLLSL E  A  SP  LA
Sbjct: 1   NLEKLKVLSKVEKAGLLSKAEELGLTLSSIEKLGLLSKAEDLGLLSLAENAAGTSPGALA 60

Query: 141 SASLPIFLAAVAAVVVIPDDSVTLVVVQAVLAAALGVGAAGLFVGSVVLGGLQEAD 196
           S +LP+ +AA+AAVV++PDDS  LV VQAV+A AL VG + LFVGSVVL GLQE+D
Sbjct: 61  SVALPLLVAAIAAVVLVPDDSTWLVAVQAVVALALVVGGSALFVGSVVLSGLQESD 116

This family consists of several hypothetical plant proteins of unknown function. Length = 116

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	196
PF06549	116	DUF1118: Protein of unknown function (DUF1118); In	100.0
PF06549	116	DUF1118: Protein of unknown function (DUF1118); In	99.13

>PF06549 DUF1118: Protein of unknown function (DUF1118); InterPro: IPR009500 This family consists of several hypothetical plant proteins of unknown function

Probab=100.00  E-value=3.7e-48  Score=305.22  Aligned_cols=116  Identities=59%  Similarity=0.793  Sum_probs=114.9

Q ss_pred             hhHhhhhhhhHhhhchhhHHHHcCCchhhhhhcccchhhhhhchhhhHHhhcCCChhhHHHhhHHHHHhhheeEEEeeCC
Q 029270           81 KLEQRKVLSNVEKAGLLSKAEELGVTLSSIEKLGLFSKAEELGLLSLLEKLASASPSTLASASLPIFLAAVAAVVVIPDD  160 (196)
Q Consensus        81 ~~e~~klLS~~e~~GLLskaE~~GlSLS~iEklGlLSkAE~lGlLS~~~~~~~~sP~aL~slaLpLl~Ag~a~v~~vPdd  160 (196)
                      |+||+|+||++||+||||+||++|+|||+|||+||||||||+|+||+++|.+..+|++|++++|||+++||++||+||||
T Consensus         1 ~~Ek~KlLs~~EkaGLLS~AE~~GlsLS~iEkLgLlSkAE~LGlLs~a~~~~~~~P~~L~slaL~ll~ag~~~v~~vPdd   80 (116)
T PF06549_consen    1 RVEKLKLLSKAEKAGLLSKAEKAGLSLSSIEKLGLLSKAEELGLLSLAEDPASSSPGALASLALPLLVAGPAAVYLVPDD   80 (116)
T ss_pred             ChHHHHHHHHHHHhhhHHHHHHcCCcHHHHHHhccccchHHhhhhHhccccccCChHHHHHHHHHHHHhhhheEEEecCC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHHHhhhhhhhhHHHHhhcccccCC
Q 029270          161 SVTLVVVQAVLAAALGVGAAGLFVGSVVLGGLQEAD  196 (196)
Q Consensus       161 s~~~Va~Q~v~A~~~~vg~~a~f~gS~~l~~LQ~sd  196 (196)
                      |+|+|++|+|+|++|++|++++|+||+++++|||+|
T Consensus        81 s~~~va~Q~vvA~~~~vg~~a~f~gS~~l~~LQ~s~  116 (116)
T PF06549_consen   81 STWLVALQAVVALVCVVGGSAAFAGSSLLSKLQESD  116 (116)
T ss_pred             cHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhcCC
Confidence            999999999999999999999999999999999998

>PF06549 DUF1118: Protein of unknown function (DUF1118); InterPro: IPR009500 This family consists of several hypothetical plant proteins of unknown function

Probab=99.13  E-value=2.5e-11  Score=96.71  Aligned_cols=49  Identities=47%  Similarity=0.662  Sum_probs=47.5

Q ss_pred             hhhhHHHhhHhhhhhhhHhhhch-hhHHHHcCCchhhhhhcccchhhhhhc
Q 029270           74 VEVDMFKKLEQRKVLSNVEKAGL-LSKAEELGVTLSSIEKLGLFSKAEELG  123 (196)
Q Consensus        74 ~~~~ll~~~e~~klLS~~e~~GL-LskaE~~GlSLS~iEklGlLSkAE~lG  123 (196)
                      +..++|+++||.+|||++|+.|+ ||+.||.|+ ||+.|++|+||.+|+++
T Consensus         3 Ek~KlLs~~EkaGLLS~AE~~GlsLS~iEkLgL-lSkAE~LGlLs~a~~~~   52 (116)
T PF06549_consen    3 EKLKLLSKAEKAGLLSKAEKAGLSLSSIEKLGL-LSKAEELGLLSLAEDPA   52 (116)
T ss_pred             HHHHHHHHHHHhhhHHHHHHcCCcHHHHHHhcc-ccchHHhhhhHhccccc
Confidence            46899999999999999999999 999999999 99999999999999999

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	196
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 1e-05
 Identities = 39/235 (16%), Positives = 55/235 (23%), Gaps = 106/235 (45%)

Query: 1   MTVSAPTPVAQVHTIECNSFLSSKLKPRSNRLFPAKNV----------STIVAMASR-KK 49
             VS   P  +         L   L      L PAKNV          + +        K
Sbjct: 129 YNVSRLQPYLK---------LRQALL----ELRPAKNVLIDGVLGSGKTWVALDVCLSYK 175

Query: 50  VNKYDANWEKQWFGAGIF------CEGSEEVEVDMFKKL--------------------- 82
           V        +      IF      C  S E  ++M +KL                     
Sbjct: 176 V--------QCKMDFKIFWLNLKNCN-SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226

Query: 83  ----EQRK--------------VLSNVEKAGLLSKAEELG----VT-------------- 106
               +                 VL NV+ A     A  L     +T              
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW-NAFNLSCKILLTTRFKQVTDFLSAAT 285

Query: 107 ---LSSIEKLGLFSKAEELGLLSLLEKLASASPSTL---ASASLPIFLAAVAAVV 155
              +S        +  E   LL    K     P  L      + P  L+ +A  +
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLL---KYLDCRPQDLPREVLTTNPRRLSIIAESI 337

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00