Citrus Sinensis ID: 029273

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190------
MNMVAGLDYGINHTESGFEVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWPWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFKGSNPICQPLFPSQHLTNRVVKLEKGKNYVYSNQGLNPSDENSCLVHYIQVQEFF
cccEEccEEEEEEccccEEEEEEEccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccccHHHHHHHcccccHHHHHHHHHHHHccccEEEEEEccccHHHHHHHHHHHHHHHcccccccccccccccccccEEEEcccccEEEEEEcccccccccEEEEEEEEccccc
ccEEEEEEEEEEccccEEEEEEEccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccccccccccccEEEEEEccccEEEEEEEEccccccccEEEEEEEEEccc
mnmvagldyginhtesGFEVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKeyhnnkflqpFQLAMYYCSLilqdqtwpwmeelevlphleaedlaKFVPMMLSRTFLECYIagniesneagSIIQYIEDVffkgsnpicqplfpsqhltnRVVKLekgknyvysnqglnpsdenscLVHYIQVQEFF
MNMVAGLDYGINHTESGFEVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWPWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFKGSNPICQPLFPSQHLTNRVVKLEKGKNYVYSNqglnpsdensCLVHYIQVQEFF
MNMVAGLDYGINHTESGFEVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWPWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFKGSNPICQPLFPSQHLTNRVVKLEKGKNYVYSNQGLNPSDENSCLVHYIQVQEFF
****AGLDYGINHTESGFEVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWPWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFKGSNPICQPLFPSQHLTNRVVKLEKGKNYVYSNQGLN***ENSCLVHYIQV****
MNMVAGLDYGINHTESGFEVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWPWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFKGSNPICQPLFPSQHLTNRVVKLEKGKNYVYSNQGLNPSDENSCLVHYIQVQEFF
MNMVAGLDYGINHTESGFEVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWPWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFKGSNPICQPLFPSQHLTNRVVKLEKGKNYVYSNQGLNPSDENSCLVHYIQVQEFF
MNMVAGLDYGINHTESGFEVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWPWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFKGSNPICQPLFPSQHLTNRVVKLEKGKNYVYSNQGLNPSDENSCLVHYIQVQEFF
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MNMVAGLDYGINHTESGFEVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWPWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFKGSNPICQPLFPSQHLTNRVVKLEKGKNYVYSNQGLNPSDENSCLVHYIQVQEFF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query196 2.2.26 [Sep-21-2011]
O22941 970 Zinc-metallopeptidase, pe yes no 0.974 0.196 0.717 3e-80
Q24K02 1019 Insulin-degrading enzyme yes no 0.867 0.166 0.354 1e-22
P14735 1019 Insulin-degrading enzyme no no 0.867 0.166 0.354 1e-22
P35559 1019 Insulin-degrading enzyme yes no 0.867 0.166 0.348 2e-22
Q9JHR7 1019 Insulin-degrading enzyme yes no 0.867 0.166 0.343 3e-21
O14077 969 Putative zinc protease mu yes no 0.948 0.191 0.234 9e-17
P22817 990 Insulin-degrading enzyme yes no 0.943 0.186 0.265 2e-16
Q06010 1027 A-factor-processing enzym yes no 0.938 0.179 0.291 6e-16
O43847 1150 Nardilysin OS=Homo sapien no no 0.913 0.155 0.315 5e-13
Q5R4H6 1152 Nardilysin OS=Pongo abeli no no 0.913 0.155 0.315 7e-13
>sp|O22941|PXM16_ARATH Zinc-metallopeptidase, peroxisomal OS=Arabidopsis thaliana GN=PXM16 PE=2 SV=1 Back     alignment and function desciption
 Score =  297 bits (761), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 137/191 (71%), Positives = 161/191 (84%)

Query: 4   VAGLDYGINHTESGFEVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHN 63
           VAGL YG++ +++GFE+T++GYNHKLRILLET+  KIA F+VKPDRF+VIKE VTKEY N
Sbjct: 573 VAGLYYGVSLSDNGFELTLLGYNHKLRILLETVVGKIANFEVKPDRFAVIKETVTKEYQN 632

Query: 64  NKFLQPFQLAMYYCSLILQDQTWPWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGN 123
            KF QP+  AMYYCSLILQDQTWPW EEL+VL HLEAED+AKFVPM+LSRTF+ECYIAGN
Sbjct: 633 YKFRQPYHQAMYYCSLILQDQTWPWTEELDVLSHLEAEDVAKFVPMLLSRTFIECYIAGN 692

Query: 124 IESNEAGSIIQYIEDVFFKGSNPICQPLFPSQHLTNRVVKLEKGKNYVYSNQGLNPSDEN 183
           +E+NEA S++++IEDV F    PIC+PLFPSQHLTNRVVKL +G  Y Y   G NPSDEN
Sbjct: 693 VENNEAESMVKHIEDVLFNDPKPICRPLFPSQHLTNRVVKLGEGMKYFYHQDGSNPSDEN 752

Query: 184 SCLVHYIQVQE 194
           S LVHYIQV  
Sbjct: 753 SALVHYIQVHR 763
Peptidase that might be involved in pathogen or wound response. Not required for peroxisome biogenesis, indole-3-butyric acid (IBA) metabolism, fatty acid beta-oxidation or degradation of glyoxylate cycle enzymes during seedling development.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 4EC: .EC: -
>sp|Q24K02|IDE_BOVIN Insulin-degrading enzyme OS=Bos taurus GN=IDE PE=2 SV=1 Back     alignment and function description
>sp|P14735|IDE_HUMAN Insulin-degrading enzyme OS=Homo sapiens GN=IDE PE=1 SV=4 Back     alignment and function description
>sp|P35559|IDE_RAT Insulin-degrading enzyme OS=Rattus norvegicus GN=Ide PE=1 SV=1 Back     alignment and function description
>sp|Q9JHR7|IDE_MOUSE Insulin-degrading enzyme OS=Mus musculus GN=Ide PE=1 SV=1 Back     alignment and function description
>sp|O14077|MU138_SCHPO Putative zinc protease mug138 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mug138 PE=1 SV=1 Back     alignment and function description
>sp|P22817|IDE_DROME Insulin-degrading enzyme OS=Drosophila melanogaster GN=Ide PE=1 SV=4 Back     alignment and function description
>sp|Q06010|STE23_YEAST A-factor-processing enzyme OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=STE23 PE=1 SV=2 Back     alignment and function description
>sp|O43847|NRDC_HUMAN Nardilysin OS=Homo sapiens GN=NRD1 PE=1 SV=2 Back     alignment and function description
>sp|Q5R4H6|NRDC_PONAB Nardilysin OS=Pongo abelii GN=NRD1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query196
224087014 949 predicted protein [Populus trichocarpa] 0.974 0.201 0.764 4e-84
255582581 967 Insulin-degrading enzyme, putative [Rici 0.974 0.197 0.774 4e-83
225441825 965 PREDICTED: zinc-metallopeptidase, peroxi 0.974 0.197 0.748 3e-82
255582579 909 Insulin-degrading enzyme, putative [Rici 0.974 0.210 0.727 1e-79
15227435 970 insulysin [Arabidopsis thaliana] gi|7509 0.974 0.196 0.717 1e-78
297827829 970 peptidase M16 family protein [Arabidopsi 0.974 0.196 0.717 2e-78
110741612 970 putative zinc protease [Arabidopsis thal 0.974 0.196 0.712 1e-77
356572034 964 PREDICTED: zinc-metallopeptidase, peroxi 0.964 0.196 0.735 2e-76
297824121 890 peptidase M16 family protein [Arabidopsi 0.974 0.214 0.701 2e-76
225441823 965 PREDICTED: zinc-metallopeptidase, peroxi 0.974 0.197 0.701 6e-76
>gi|224087014|ref|XP_002308028.1| predicted protein [Populus trichocarpa] gi|222854004|gb|EEE91551.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  316 bits (809), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 146/191 (76%), Positives = 171/191 (89%)

Query: 4   VAGLDYGINHTESGFEVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHN 63
           VAGL YGI++T+SGF+VTVVGYNHKLRILLET+ +KI+ FKVKPDRFSVIKEMVTKEY N
Sbjct: 550 VAGLYYGISNTDSGFQVTVVGYNHKLRILLETVIEKISNFKVKPDRFSVIKEMVTKEYGN 609

Query: 64  NKFLQPFQLAMYYCSLILQDQTWPWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGN 123
            KF QP+Q AMYYCSL+LQDQTWPWME+LE+LPHL+AEDLAKF+P+MLSR FLECYIAGN
Sbjct: 610 LKFQQPYQQAMYYCSLLLQDQTWPWMEQLEILPHLQAEDLAKFIPLMLSRAFLECYIAGN 669

Query: 124 IESNEAGSIIQYIEDVFFKGSNPICQPLFPSQHLTNRVVKLEKGKNYVYSNQGLNPSDEN 183
           IE +EA S+I +IEDVF +G +PICQPLFPSQHLT+RV+KLE+G NY+Y  +GLNP DEN
Sbjct: 670 IERSEAESMILHIEDVFNEGPDPICQPLFPSQHLTSRVIKLERGINYLYPIEGLNPDDEN 729

Query: 184 SCLVHYIQVQE 194
           S LVHYIQ+  
Sbjct: 730 SALVHYIQIHR 740

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255582581|ref|XP_002532073.1| Insulin-degrading enzyme, putative [Ricinus communis] gi|223528255|gb|EEF30307.1| Insulin-degrading enzyme, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225441825|ref|XP_002283993.1| PREDICTED: zinc-metallopeptidase, peroxisomal [Vitis vinifera] gi|297739661|emb|CBI29843.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255582579|ref|XP_002532072.1| Insulin-degrading enzyme, putative [Ricinus communis] gi|223528254|gb|EEF30306.1| Insulin-degrading enzyme, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|15227435|ref|NP_181710.1| insulysin [Arabidopsis thaliana] gi|75097648|sp|O22941.1|PXM16_ARATH RecName: Full=Zinc-metallopeptidase, peroxisomal; AltName: Full=Peroxisomal M16 protease gi|2335108|gb|AAC02769.1| putative zinc protease [Arabidopsis thaliana] gi|330254939|gb|AEC10033.1| insulysin [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297827829|ref|XP_002881797.1| peptidase M16 family protein [Arabidopsis lyrata subsp. lyrata] gi|297327636|gb|EFH58056.1| peptidase M16 family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|110741612|dbj|BAE98754.1| putative zinc protease [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356572034|ref|XP_003554175.1| PREDICTED: zinc-metallopeptidase, peroxisomal-like [Glycine max] Back     alignment and taxonomy information
>gi|297824121|ref|XP_002879943.1| peptidase M16 family protein [Arabidopsis lyrata subsp. lyrata] gi|297325782|gb|EFH56202.1| peptidase M16 family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|225441823|ref|XP_002283970.1| PREDICTED: zinc-metallopeptidase, peroxisomal [Vitis vinifera] gi|297739662|emb|CBI29844.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query196
TAIR|locus:2054346 970 AT2G41790 [Arabidopsis thalian 0.964 0.194 0.724 6.5e-74
TAIR|locus:2103523 891 AT3G57470 [Arabidopsis thalian 0.969 0.213 0.663 1.2e-67
ZFIN|ZDB-GENE-070410-85 998 ide "insulin-degrading enzyme" 0.933 0.183 0.338 2.7e-22
ASPGD|ASPL0000015933 1100 AN8044 [Emericella nidulans (t 0.923 0.164 0.304 6.5e-22
UNIPROTKB|F1SC98 990 IDE "Uncharacterized protein" 0.877 0.173 0.353 1.5e-21
UNIPROTKB|Q24K02 1019 IDE "Insulin-degrading enzyme" 0.877 0.168 0.353 1.5e-21
UNIPROTKB|E2RGZ3 1019 IDE "Uncharacterized protein" 0.877 0.168 0.353 1.5e-21
UNIPROTKB|P14735 1019 IDE "Insulin-degrading enzyme" 0.877 0.168 0.353 1.5e-21
RGD|2861 1019 Ide "insulin degrading enzyme" 0.877 0.168 0.348 3.2e-21
MGI|MGI:96412 1019 Ide "insulin degrading enzyme" 0.877 0.168 0.342 2.3e-20
TAIR|locus:2054346 AT2G41790 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 746 (267.7 bits), Expect = 6.5e-74, P = 6.5e-74
 Identities = 137/189 (72%), Positives = 161/189 (85%)

Query:     4 VAGLDYGINHTESGFEVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHN 63
             VAGL YG++ +++GFE+T++GYNHKLRILLET+  KIA F+VKPDRF+VIKE VTKEY N
Sbjct:   573 VAGLYYGVSLSDNGFELTLLGYNHKLRILLETVVGKIANFEVKPDRFAVIKETVTKEYQN 632

Query:    64 NKFLQPFQLAMYYCSLILQDQTWPWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGN 123
              KF QP+  AMYYCSLILQDQTWPW EEL+VL HLEAED+AKFVPM+LSRTF+ECYIAGN
Sbjct:   633 YKFRQPYHQAMYYCSLILQDQTWPWTEELDVLSHLEAEDVAKFVPMLLSRTFIECYIAGN 692

Query:   124 IESNEAGSIIQYIEDVFFKGSNPICQPLFPSQHLTNRVVKLEKGKNYVYSNQGLNPSDEN 183
             +E+NEA S++++IEDV F    PIC+PLFPSQHLTNRVVKL +G  Y Y   G NPSDEN
Sbjct:   693 VENNEAESMVKHIEDVLFNDPKPICRPLFPSQHLTNRVVKLGEGMKYFYHQDGSNPSDEN 752

Query:   184 SCLVHYIQV 192
             S LVHYIQV
Sbjct:   753 SALVHYIQV 761
GO:0003824 "catalytic activity" evidence=IEA
GO:0004222 "metalloendopeptidase activity" evidence=IEA;ISS
GO:0005737 "cytoplasm" evidence=ISM
GO:0006508 "proteolysis" evidence=IEA;ISS
GO:0008270 "zinc ion binding" evidence=IEA
GO:0046872 "metal ion binding" evidence=IEA
TAIR|locus:2103523 AT3G57470 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-070410-85 ide "insulin-degrading enzyme" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ASPGD|ASPL0000015933 AN8044 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|F1SC98 IDE "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q24K02 IDE "Insulin-degrading enzyme" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2RGZ3 IDE "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P14735 IDE "Insulin-degrading enzyme" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|2861 Ide "insulin degrading enzyme" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:96412 Ide "insulin degrading enzyme" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O22941PXM16_ARATH3, ., 4, ., 2, 4, ., -0.71720.97440.1969yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pg.C_LG_VI0419
hypothetical protein (950 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query196
COG1025 937 COG1025, Ptr, Secreted/periplasmic Zn-dependent pe 9e-25
>gnl|CDD|223956 COG1025, Ptr, Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
 Score =  100 bits (251), Expect = 9e-25
 Identities = 45/191 (23%), Positives = 78/191 (40%), Gaps = 9/191 (4%)

Query: 4   VAGLDYGINHTESGFEVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHN 63
           +AGL + +    +G ++T+ G+  +L  LL      +    V  DRF   K  +++E  N
Sbjct: 568 LAGLSFSLAANSNGLDLTISGFTQRLPQLLRAFLDGLFSLPVDEDRFEQAKSQLSEELKN 627

Query: 64  NKFLQPFQLAMYYCSLILQDQTWPWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGN 123
               +P++ A+   + +LQ   W   E    L  +  E+ A F   +L+   LE  + GN
Sbjct: 628 ALTGKPYRQALDGLTGLLQVPYWSREERRNALESVSVEEFAAFRDTLLNGVHLEMLVLGN 687

Query: 124 IESNEAGSIIQYIEDVFFKGSNPICQPLFPSQHLTNRVVKLEKGKNYVYSNQGLNPSDEN 183
           +   +A       E +  K       P   S    N  V L KG   ++   G      N
Sbjct: 688 LTEADA---TNLAETLQKK------LPAIGSTWYRNPSVYLLKGGTRIFETVGGESDSAN 738

Query: 184 SCLVHYIQVQE 194
           + +++  Q  E
Sbjct: 739 AAILYPQQYDE 749

Length = 937

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 196
KOG0959 974 consensus N-arginine dibasic convertase NRD1 and r 100.0
COG1025 937 Ptr Secreted/periplasmic Zn-dependent peptidases, 99.94
PRK15101 961 protease3; Provisional 99.91
COG0612 438 PqqL Predicted Zn-dependent peptidases [General fu 99.52
TIGR02110 696 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable pe 99.48
PRK15101 961 protease3; Provisional 99.26
PTZ00432 1119 falcilysin; Provisional 98.94
KOG0960 467 consensus Mitochondrial processing peptidase, beta 98.84
PF00675149 Peptidase_M16: Insulinase (Peptidase family M16) T 98.43
PF05193184 Peptidase_M16_C: Peptidase M16 inactive domain; In 98.16
KOG2067 472 consensus Mitochondrial processing peptidase, alph 98.02
COG1026 978 Predicted Zn-dependent peptidases, insulinase-like 97.92
COG1025 937 Ptr Secreted/periplasmic Zn-dependent peptidases, 97.64
KOG2067472 consensus Mitochondrial processing peptidase, alph 97.32
KOG2583 429 consensus Ubiquinol cytochrome c reductase, subuni 97.32
COG0612438 PqqL Predicted Zn-dependent peptidases [General fu 97.31
KOG0961 1022 consensus Predicted Zn2+-dependent endopeptidase, 97.26
KOG0959 974 consensus N-arginine dibasic convertase NRD1 and r 97.26
KOG0960467 consensus Mitochondrial processing peptidase, beta 95.95
PTZ00432 1119 falcilysin; Provisional 95.49
COG1026 978 Predicted Zn-dependent peptidases, insulinase-like 95.13
KOG2019 998 consensus Metalloendoprotease HMP1 (insulinase sup 94.72
PF08367248 M16C_assoc: Peptidase M16C associated; InterPro: I 91.89
KOG2583429 consensus Ubiquinol cytochrome c reductase, subuni 85.99
KOG0961 1022 consensus Predicted Zn2+-dependent endopeptidase, 82.84
>KOG0959 consensus N-arginine dibasic convertase NRD1 and related Zn2+-dependent endopeptidases, insulinase superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=1.8e-33  Score=248.62  Aligned_cols=192  Identities=38%  Similarity=0.676  Sum_probs=182.3

Q ss_pred             CCceecceEEEeecCceeEEEEccccchHHHHHHHHHHHhccCCcChhhHHHHHHHHHHHhhcccccChHHHHHHHHHHh
Q 029273            1 MNMVAGLDYGINHTESGFEVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLI   80 (196)
Q Consensus         1 ~A~~Agl~~~~~~~~~g~~i~v~G~s~kl~~~l~~v~~~l~~~~~~~~~F~~~k~~~~~~l~n~~~~~P~~~a~~~~~~l   80 (196)
                      +|..||++|+++.+..|+.++|+||++|++.+++.+++.+.++.+++++|+.+|+.+.++++|....+|+.+|.+++..+
T Consensus       572 ~A~~aGl~~~~~~s~~G~~~~v~Gfnekl~~ll~~~~~~~~~f~~~~~rf~iike~~~~~~~n~~~~~p~~~a~~~~~ll  651 (974)
T KOG0959|consen  572 PALLAGLTYSLSSSSKGVELRVSGFNEKLPLLLEKVVQMMANFELDEDRFEIIKELLKRELRNHAFDNPYQLANDYLLLL  651 (974)
T ss_pred             HHHhccceEEeeecCCceEEEEeccCcccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999987899999999999999


Q ss_pred             hcCCCCChhHHHhhCCCCCHHHHHHHHHHhhhhhheeeEeecCCChHHHHHHHHHHHHHhccCCCCCccCCCCCCCCccc
Q 029273           81 LQDQTWPWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFKGSNPICQPLFPSQHLTNR  160 (196)
Q Consensus        81 l~~~~~~~~~~~~~l~~it~~dl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~  160 (196)
                      +.+..|+.++++++++.+|++|+..|...++++.+++++|+||++.++|.++++.+.+.+ ....|.++|+.++++...+
T Consensus       652 l~~~~W~~~e~~~al~~~~le~~~~F~~~~~~~~~~e~~i~GN~te~~A~~l~~~v~d~l-~~~~~~~~p~~~~~~~~~~  730 (974)
T KOG0959|consen  652 LEESIWSKEELLEALDDVTLEDLESFISEFLQPFHLELLIHGNLTEKEALQLLKSVLDIL-KSAAPNSRPLFRSEHLPRR  730 (974)
T ss_pred             hhccccchHHHHHHhhcccHHHHHHHHHHHhhhhheEEEEecCcchHHHHHHHHHHHhhh-hccCCCCccccccccCccc
Confidence            999999999999999999999999999999999999999999999999999999999999 4456788899888898899


Q ss_pred             eEEeCCCceEEEecCCCCCCCCCeEEEEEEEcCC
Q 029273          161 VVKLEKGKNYVYSNQGLNPSDENSCLVHYIQVQE  194 (196)
Q Consensus       161 ~~~l~~g~~~~~~~~~~~~~~~ns~i~~y~Q~g~  194 (196)
                      .++||.|.+++|+.. .|++|+|||+++|||+|.
T Consensus       731 ~~~lp~G~~~~~~~~-~n~~~~ns~i~~~~Q~~~  763 (974)
T KOG0959|consen  731 EIQLPNGDYYFYRHL-LNKTDDNSCIEVYYQIGV  763 (974)
T ss_pred             ceeccCCceEEEEcc-cccCCCCceEEEEEEccc
Confidence            999999999887766 789999999999999874

>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK15101 protease3; Provisional Back     alignment and domain information
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only] Back     alignment and domain information
>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable peptidase PqqF Back     alignment and domain information
>PRK15101 protease3; Provisional Back     alignment and domain information
>PTZ00432 falcilysin; Provisional Back     alignment and domain information
>KOG0960 consensus Mitochondrial processing peptidase, beta subunit, and related enzymes (insulinase superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00675 Peptidase_M16: Insulinase (Peptidase family M16) This is family M16 in the peptidase classification Back     alignment and domain information
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>KOG2067 consensus Mitochondrial processing peptidase, alpha subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only] Back     alignment and domain information
>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2067 consensus Mitochondrial processing peptidase, alpha subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2583 consensus Ubiquinol cytochrome c reductase, subunit QCR2 [Energy production and conversion] Back     alignment and domain information
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only] Back     alignment and domain information
>KOG0961 consensus Predicted Zn2+-dependent endopeptidase, insulinase superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0959 consensus N-arginine dibasic convertase NRD1 and related Zn2+-dependent endopeptidases, insulinase superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0960 consensus Mitochondrial processing peptidase, beta subunit, and related enzymes (insulinase superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PTZ00432 falcilysin; Provisional Back     alignment and domain information
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only] Back     alignment and domain information
>KOG2019 consensus Metalloendoprotease HMP1 (insulinase superfamily) [General function prediction only; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF08367 M16C_assoc: Peptidase M16C associated; InterPro: IPR013578 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>KOG2583 consensus Ubiquinol cytochrome c reductase, subunit QCR2 [Energy production and conversion] Back     alignment and domain information
>KOG0961 consensus Predicted Zn2+-dependent endopeptidase, insulinase superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query196
2wby_A 990 Crystal Structure Of Human Insulin-Degrading Enzyme 4e-24
3e4z_A 990 Crystal Structure Of Human Insulin Degrading Enzyme 4e-24
3qz2_A 990 The Structure Of Cysteine-Free Human Insulin Degrad 4e-24
3e4a_A 1019 Human Ide-Inhibitor Complex At 2.6 Angstrom Resolut 4e-24
3hgz_A 969 Crystal Structure Of Human Insulin-Degrading Enzyme 4e-24
3cww_A 990 Crystal Structure Of Ide-Bradykinin Complex Length 5e-24
2g47_A 990 Crystal Structure Of Human Insulin-Degrading Enzyme 1e-23
2jg4_A 990 Substrate-Free Ide Structure In Its Closed Conforma 1e-23
3p7o_A 1019 Rat Insulin Degrading Enzyme (Insulysin) E111f Muta 2e-23
3tuv_A 1019 Crystal Structure Of Insulysin With Bound Atp Lengt 2e-23
3p7l_A 978 Rat Insulin Degrading Enzyme (Insulysin) Length = 9 2e-23
>pdb|2WBY|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In Complex With Insulin Length = 990 Back     alignment and structure 
Iteration: 1

 Score =  107 bits (267), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 64/181 (35%), Positives = 100/181 (55%), Gaps = 9/181 (4%)
Query: 4   VAGLDYGINHTESGFEVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHN 63
           +AGL Y + +T  G  ++V GYN K  ILL+ I +K+A F++   RF +IKE   +  +N
Sbjct: 584 LAGLSYDLQNTIYGMYLSVKGYNDKQPILLKKIIEKMATFEIDEKRFEIIKEAYMRSLNN 643
Query: 64  NKFLQPFQLAMYYCSLILQDQTWPWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGN 123
            +  QP Q AMYY  L++ +  W   E  E L  +    L  F+P +LSR  +E  + GN
Sbjct: 644 FRAEQPHQHAMYYLRLLMTEVAWTKDELKEALDDVTLPRLKAFIPQLLSRLHIEALLHGN 703
Query: 124 IESNEAGSIIQYIEDVFFKGSNPICQPLFPSQHLTNRVVKL-EKG------KNYVYSNQG 176
           I    A  I+Q +ED   + ++   +PL PSQ +  R V+L ++G      +N V++N G
Sbjct: 704 ITKQAALGIMQMVEDTLIEHAH--TKPLLPSQLVRYREVQLPDRGWFVYQQRNEVHNNSG 761
Query: 177 L 177
           +
Sbjct: 762 I 762
>pdb|3E4Z|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In Complex With Insulin-Like Growth Factor Ii Length = 990 Back     alignment and structure
>pdb|3QZ2|A Chain A, The Structure Of Cysteine-Free Human Insulin Degrading Enzyme Length = 990 Back     alignment and structure
>pdb|3E4A|A Chain A, Human Ide-Inhibitor Complex At 2.6 Angstrom Resolution Length = 1019 Back     alignment and structure
>pdb|3HGZ|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In Complex With Amylin Length = 969 Back     alignment and structure
>pdb|3CWW|A Chain A, Crystal Structure Of Ide-Bradykinin Complex Length = 990 Back     alignment and structure
>pdb|2G47|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In Complex With Amyloid-Beta (1-40) Length = 990 Back     alignment and structure
>pdb|2JG4|A Chain A, Substrate-Free Ide Structure In Its Closed Conformation Length = 990 Back     alignment and structure
>pdb|3P7O|A Chain A, Rat Insulin Degrading Enzyme (Insulysin) E111f Mutant With Two Bound Peptides Length = 1019 Back     alignment and structure
>pdb|3TUV|A Chain A, Crystal Structure Of Insulysin With Bound Atp Length = 1019 Back     alignment and structure
>pdb|3P7L|A Chain A, Rat Insulin Degrading Enzyme (Insulysin) Length = 978 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query196
3cww_A 990 Insulysin, insulin-degrading enzyme, insulinase; A 7e-40
1q2l_A 939 Protease III; hydrolase; 2.20A {Escherichia coli s 3e-33
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ... Length = 990 Back     alignment and structure
 Score =  143 bits (361), Expect = 7e-40
 Identities = 66/189 (34%), Positives = 96/189 (50%), Gaps = 4/189 (2%)

Query: 4   VAGLDYGINHTESGFEVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHN 63
           +AGL Y + +T  G  ++V GYN K  ILL+ I +K+A F++   RF +IKE   +  +N
Sbjct: 584 LAGLSYDLQNTIYGMYLSVKGYNDKQPILLKKIIEKMATFEIDEARFEIIKEAYMRSLNN 643

Query: 64  NKFLQPFQLAMYYCSLILQDQTWPWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGN 123
            +  QP Q AMYY  L++ +  W   E  E L  +    L  F+P +LSR  +E  + GN
Sbjct: 644 FRAEQPHQHAMYYLRLLMTEVAWTKDELKEALADVTLPRLKAFIPQLLSRLHIEALLHGN 703

Query: 124 IESNEAGSIIQYIEDVFFKGSNPICQPLFPSQHLTNRVVKLEKGKNYVYSNQGLNPSDEN 183
           I    A  I+Q +ED      +   +PL PSQ    R V+L     +VY  +  N    N
Sbjct: 704 ITKQAALGIMQMVEDTLI--EHAHTKPLLPSQLAAYREVQLPDRGWFVYQQR--NEVHNN 759

Query: 184 SCLVHYIQV 192
           S +  Y Q 
Sbjct: 760 SGIEIYYQT 768
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Length = 939 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query196
1q2l_A 939 Protease III; hydrolase; 2.20A {Escherichia coli s 99.89
3cww_A 990 Insulysin, insulin-degrading enzyme, insulinase; A 99.88
3gwb_A 434 Peptidase M16 inactive domain family protein; pept 99.72
3amj_B 424 Zinc peptidase inactive subunit; alpha/beta, zinc 99.67
1pp9_B 439 Ubiquinol-cytochrome C reductase complex core Pro 99.64
1hr6_A 475 Alpha-MPP, mitochondrial processing peptidase alph 99.63
3d3y_A 425 Uncharacterized protein; APC29635, conserved prote 99.61
3cx5_A 431 Cytochrome B-C1 complex subunit 1, mitochondrial; 99.61
3cx5_B 352 Cytochrome B-C1 complex subunit 2, mitochondrial; 99.6
3eoq_A 406 Putative zinc protease; two similar domains of bet 99.55
3ami_A 445 Zinc peptidase; alpha/beta, zinc binding, hydrolas 99.54
3hdi_A 421 Processing protease; CAGE structure, M16B peptidas 99.53
1hr6_B 443 Beta-MPP, mitochondrial processing peptidase beta 99.52
1pp9_A 446 Ubiquinol-cytochrome C reductase complex core Pro 99.52
3go9_A 492 Insulinase family protease; IDP00573, structural g 99.27
2fge_A 995 Atprep2;, zinc metalloprotease (insulinase family) 99.26
1q2l_A 939 Protease III; hydrolase; 2.20A {Escherichia coli s 99.23
3s5m_A 1193 Falcilysin; M16 metalloprotease, peptidase, hydrol 99.12
3cww_A 990 Insulysin, insulin-degrading enzyme, insulinase; A 99.08
2fge_A 995 Atprep2;, zinc metalloprotease (insulinase family) 99.03
3ih6_A197 Putative zinc protease; bordetella pertussis toham 98.67
3gwb_A434 Peptidase M16 inactive domain family protein; pept 98.45
3hdi_A421 Processing protease; CAGE structure, M16B peptidas 98.4
3eoq_A406 Putative zinc protease; two similar domains of bet 98.39
3amj_B424 Zinc peptidase inactive subunit; alpha/beta, zinc 98.36
3cx5_A431 Cytochrome B-C1 complex subunit 1, mitochondrial; 98.33
1hr6_B443 Beta-MPP, mitochondrial processing peptidase beta 98.31
1pp9_A446 Ubiquinol-cytochrome C reductase complex core Pro 98.3
1pp9_B439 Ubiquinol-cytochrome C reductase complex core Pro 98.29
1hr6_A475 Alpha-MPP, mitochondrial processing peptidase alph 98.29
3d3y_A425 Uncharacterized protein; APC29635, conserved prote 97.99
3ami_A445 Zinc peptidase; alpha/beta, zinc binding, hydrolas 97.98
3s5m_A 1193 Falcilysin; M16 metalloprotease, peptidase, hydrol 97.87
3go9_A492 Insulinase family protease; IDP00573, structural g 97.51
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Back     alignment and structure
Probab=99.89  E-value=8.6e-22  Score=178.31  Aligned_cols=180  Identities=15%  Similarity=0.285  Sum_probs=151.5

Q ss_pred             CceecceEEEeecCceeEEEEccccchHHHHHHHHHHHhccCCcChhhHHHHHHHHHHHhhcccccChHHHHHHHHHHhh
Q 029273            2 NMVAGLDYGINHTESGFEVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLIL   81 (196)
Q Consensus         2 A~~Agl~~~~~~~~~g~~i~v~G~s~kl~~~l~~v~~~l~~~~~~~~~F~~~k~~~~~~l~n~~~~~P~~~a~~~~~~ll   81 (196)
                      |.+||++++++. .+|+.++++|++++++.+++.+.+.+.+|.+++++|+++|++++++++|...++|+.++.+.+..++
T Consensus       564 ~~l~G~~~~~~~-~~g~~~~~~g~~~~l~~~l~ll~~~l~~p~~~~~~f~~~k~~~~~~l~~~~~~~p~~~a~~~l~~~l  642 (939)
T 1q2l_A          564 ASVGGISFSTNA-NNGLMVNANGYTQRLPQLFQALLEGYFSYTATEDQLEQAKSWYNQMMDSAEKGKAFEQAIMPAQMLS  642 (939)
T ss_dssp             HHHTTEEEEEEE-SSEEEEEEEEESSSHHHHHHHHHHHHHHCCCCSHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHTT
T ss_pred             HHHcCcEEEEee-CCcEEEEEEcccHhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhhhcChHHHHHHHHHHHh
Confidence            578999999999 9999999999999999999999999999999999999999999999999866689999999999999


Q ss_pred             cCCCCChhHHHhhCCCCCHHHHHHHHHHhhhhhheeeEeecCCChHHHHHHHHHHHHHhccCCCCCccCCCCCCCCccce
Q 029273           82 QDQTWPWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFKGSNPICQPLFPSQHLTNRV  161 (196)
Q Consensus        82 ~~~~~~~~~~~~~l~~it~~dl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~  161 (196)
                      +++.|+..+.++.|+++|++|+.+|+++++.+.+++++|+||+++++++.+++.+.+.+....    .+  +   ...+.
T Consensus       643 ~~~~~~~~~~~~~l~~it~~~l~~f~~~~~~~~~~~~~vvGn~~~~~~~~l~~~~~~~l~~~~----~~--~---~~~~~  713 (939)
T 1q2l_A          643 QVPYFSRDERRKILPSITLKEVLAYRDALKSGARPEFMVIGNMTEAQATTLARDVQKQLGADG----SE--W---CRNKD  713 (939)
T ss_dssp             SSSCCCHHHHHHHGGGCCHHHHHHHHHHHHTTCEEEEEEEESCCHHHHHHHHHHHHHHHTCCC----SC--C---CCCEE
T ss_pred             cCCCCCHHHHHHHHhcCCHHHHHHHHHHHHhhheEEEEEEcCCCHHHHHHHHHHHHHHHccCC----cc--c---cccce
Confidence            988899989999999999999999999999999999999999999999999999888885321    01  1   11223


Q ss_pred             EEeCCCceEEEecCCCCCCCCCeEE-EEEEEcCC
Q 029273          162 VKLEKGKNYVYSNQGLNPSDENSCL-VHYIQVQE  194 (196)
Q Consensus       162 ~~l~~g~~~~~~~~~~~~~~~ns~i-~~y~Q~g~  194 (196)
                      ..++.|..+.+...  . .+.++++ .+|||+|.
T Consensus       714 ~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~  744 (939)
T 1q2l_A          714 VVVDKKQSVIFEKA--G-NSTDSALAAVFVPTGY  744 (939)
T ss_dssp             ECCCSCEEEEEEEC--C-SSSCEEEEEEEECSSC
T ss_pred             EEeCCCceEEEecC--C-CCCCceeEEEEEecCC
Confidence            34455544444433  2 2446666 88889873
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ... Back     alignment and structure
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens} Back     alignment and structure
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas} Back     alignment and structure
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ... Back     alignment and structure
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A* Back     alignment and structure
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis} Back     alignment and structure
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A* Back     alignment and structure
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B* Back     alignment and structure
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus} Back     alignment and structure
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C Back     alignment and structure
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125} Back     alignment and structure
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B* Back     alignment and structure
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ... Back     alignment and structure
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis} Back     alignment and structure
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Back     alignment and structure
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Back     alignment and structure
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A Back     alignment and structure
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ... Back     alignment and structure
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Back     alignment and structure
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A Back     alignment and structure
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens} Back     alignment and structure
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125} Back     alignment and structure
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus} Back     alignment and structure
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas} Back     alignment and structure
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A* Back     alignment and structure
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B* Back     alignment and structure
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ... Back     alignment and structure
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ... Back     alignment and structure
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A* Back     alignment and structure
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis} Back     alignment and structure
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C Back     alignment and structure
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A Back     alignment and structure
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 196
d1q2la1229 d.185.1.1 (A:504-732) Protease III {Escherichia co 1e-13
>d1q2la1 d.185.1.1 (A:504-732) Protease III {Escherichia coli [TaxId: 562]} Length = 229 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: LuxS/MPP-like metallohydrolase
superfamily: LuxS/MPP-like metallohydrolase
family: MPP-like
domain: Protease III
species: Escherichia coli [TaxId: 562]

 Score = 64.6 bits (156), Expect = 1e-13
 Identities = 20/136 (14%), Positives = 54/136 (39%)

Query: 13  HTESGFEVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQL 72
           +  +G  V   GY  +L  L + + +    +    D+    K    +   + +  + F+ 
Sbjct: 94  NANNGLMVNANGYTQRLPQLFQALLEGYFSYTATEDQLEQAKSWYNQMMDSAEKGKAFEQ 153

Query: 73  AMYYCSLILQDQTWPWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSI 132
           A+    ++ Q   +   E  ++LP +  +++  +   + S    E  + GN+   +A ++
Sbjct: 154 AIMPAQMLSQVPYFSRDERRKILPSITLKEVLAYRDALKSGARPEFMVIGNMTEAQATTL 213

Query: 133 IQYIEDVFFKGSNPIC 148
            + ++       +  C
Sbjct: 214 ARDVQKQLGADGSEWC 229

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query196
d1q2la1229 Protease III {Escherichia coli [TaxId: 562]} 99.91
d1hr6b1222 Mitochondrial processing peptidase (MPP) beta chai 99.67
d1ppja1232 Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [T 99.66
d1hr6a1220 Mitochondrial processing peptidase (MPP) alpha cha 99.64
d3cx5a1213 Cytochrome bc1 core subunit 1 {Baker's yeast (Sacc 99.6
d1ppjb1219 Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [T 99.59
d3cx5b1202 Cytochrome bc1 core subunit 2 {Baker's yeast (Sacc 99.58
d1q2la4240 Protease III {Escherichia coli [TaxId: 562]} 99.51
d2fgea4257 Presequence protease 1, PREP1 {Thale cress (Arabid 99.17
d1ppjb2204 Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [T 99.0
d1hr6b2217 Mitochondrial processing peptidase (MPP) beta chai 98.69
d1hr6a2237 Mitochondrial processing peptidase (MPP) alpha cha 98.63
d1ppja2209 Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [T 98.63
d1q2la2228 Protease III {Escherichia coli [TaxId: 562]} 98.38
d3cx5a2218 Cytochrome bc1 core subunit 1 {Baker's yeast (Sacc 98.26
d2fgea2196 Presequence protease 1, PREP1 {Thale cress (Arabid 98.25
d2fgea1258 Presequence protease 1, PREP1 {Thale cress (Arabid 97.41
d1q2la3240 Protease III {Escherichia coli [TaxId: 562]} 91.94
>d1q2la1 d.185.1.1 (A:504-732) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: LuxS/MPP-like metallohydrolase
superfamily: LuxS/MPP-like metallohydrolase
family: MPP-like
domain: Protease III
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=6.6e-24  Score=160.96  Aligned_cols=143  Identities=15%  Similarity=0.295  Sum_probs=133.5

Q ss_pred             CceecceEEEeecCceeEEEEccccchHHHHHHHHHHHhccCCcChhhHHHHHHHHHHHhhcccccChHHHHHHHHHHhh
Q 029273            2 NMVAGLDYGINHTESGFEVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLIL   81 (196)
Q Consensus         2 A~~Agl~~~~~~~~~g~~i~v~G~s~kl~~~l~~v~~~l~~~~~~~~~F~~~k~~~~~~l~n~~~~~P~~~a~~~~~~ll   81 (196)
                      |+.||+++++.. ..|+++.++||+++++.+++.+++.+.++.+++++|+++|+++++++++.....|+.++...+..+.
T Consensus        84 a~~~g~~~~~~~-~~~~~i~~~~~s~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  162 (229)
T d1q2la1          84 ASVGGISFSTNA-NNGLMVNANGYTQRLPQLFQALLEGYFSYTATEDQLEQAKSWYNQMMDSAEKGKAFEQAIMPAQMLS  162 (229)
T ss_dssp             HHHTTEEEEEEE-SSEEEEEEEEESSSHHHHHHHHHHHHHHCCCCSHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHTT
T ss_pred             HHhccccccccc-cceEEEEEEeehHHHHHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhc
Confidence            678999999975 5789999999999999999999999999999999999999999999999877788888888888888


Q ss_pred             cCCCCChhHHHhhCCCCCHHHHHHHHHHhhhhhheeeEeecCCChHHHHHHHHHHHHHhccCCC
Q 029273           82 QDQTWPWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFKGSN  145 (196)
Q Consensus        82 ~~~~~~~~~~~~~l~~it~~dl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~~~~~l~~~~~  145 (196)
                      ..+.|+..+.+++|++||++|+++|+++++++.+++++|+||+++++|+++++.+.+.|+..++
T Consensus       163 ~~~~~~~~~~~~~l~~it~~dl~~f~~~~~~~~~~~~~i~Gn~~~~~a~~l~~~~~~~L~~~~~  226 (229)
T d1q2la1         163 QVPYFSRDERRKILPSITLKEVLAYRDALKSGARPEFMVIGNMTEAQATTLARDVQKQLGADGS  226 (229)
T ss_dssp             SSSCCCHHHHHHHGGGCCHHHHHHHHHHHHTTCEEEEEEEESCCHHHHHHHHHHHHHHHTCCCS
T ss_pred             ccCCCcchhhHHHHhhhhHHHHHHHHHHhcCccCEEEEEEcCCCHHHHHHHHHHHHhhcCCCCC
Confidence            7888999999999999999999999999999999999999999999999999999999976543
>d1hr6b1 d.185.1.1 (B:24-245) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ppja1 d.185.1.1 (A:2-233) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1hr6a1 d.185.1.1 (A:14-233) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d3cx5a1 d.185.1.1 (A:27-239) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ppjb1 d.185.1.1 (B:17-235) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d3cx5b1 d.185.1.1 (B:17-218) Cytochrome bc1 core subunit 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q2la4 d.185.1.1 (A:24-263) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fgea4 d.185.1.1 (A:15-271) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1ppjb2 d.185.1.1 (B:236-439) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1hr6b2 d.185.1.1 (B:246-462) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1hr6a2 d.185.1.1 (A:234-470) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ppja2 d.185.1.1 (A:234-442) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1q2la2 d.185.1.1 (A:733-960) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d3cx5a2 d.185.1.1 (A:240-457) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2fgea2 d.185.1.1 (A:798-993) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2fgea1 d.185.1.1 (A:540-797) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1q2la3 d.185.1.1 (A:264-503) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure