Citrus Sinensis ID: 029276

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190------
Protein Sequence
METVPTATAATAEDFSSSSSSTSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLLMGFLSPQIDPEYSDGPTLPTRGSDEFRPFVRRLPEFKFWYCVTRSFCIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGKQVLLIYLAF
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccEEEEHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEEcc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccEccccccccEEEEEccc
Coil and Loop (DISEMBL)
metvptataataedfsssssstsptaaISRWKYNVSRRYQHlldksvphvLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLLMgflspqidpeysdgptlptrgsdefrpfvrrlpefkfwycVTRSFCIGFVLTffsafdvpvfWPILLFYWLMLFTLTMRRQIMHMIKYryvpfslgkQVLLIYLAF
Flexible Loop (DISEMBL)
metvptataataedfsssssstsptaAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLLMGFLSPQIDPEYSDGPTLPTRGSDEFRPFVRRLPEFKFWYCVTRSFCIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGKQVLLIYLAF
Low Complexity Region (SEG)
METVPtataataedfsssssstsptaaisRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLLMGFLSPQIDPEYSDGPTLPTRGSDEFRPFVRRLPEFKFWYCVTRSFCIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGKQVLLIYLAF
Disordered region (IsUnstruct)
**************************AISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLLMGFLSPQI*****************FRPFVRRLPEFKFWYCVTRSFCIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGKQVLLIYLA*
Disordered Region (DISOPRED)
******************************WKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLLMGFLSPQID*******************FVRRLPEFKFWYCVTRSFCIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGKQVLLIYLAF
Disordered Region (DISEMBL)
***************************ISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLLMGFLSPQIDPEYSDGPTLPTRGSDEFRPFVRRLPEFKFWYCVTRSFCIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGKQVLLIYLAF
Disordered Region (DISPRO)
************************TAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLLMGFLSPQIDP****GPTLPTRGSDEFRPFVRRLPEFKFWYCVTRSFCIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGKQVLLIYLAF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
METVPTATAATAEDFSSSSSSTSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLLMGFLSPQIDPEYSDGPTLPTRGSDEFRPFVRRLPEFKFWYCVTRSFCIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGKQVLLIYLAF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	196	2.2.26 [Sep-21-2011]
Q9ZWI7	212	Protein RER1C OS=Arabidop	yes	no	0.897	0.830	0.685	3e-65
O48670	191	Protein RER1A OS=Arabidop	no	no	0.882	0.905	0.647	3e-64
O48671	195	Protein RER1B OS=Arabidop	no	no	0.882	0.887	0.628	1e-61
Q9ZPV7	221	Protein RER1D OS=Arabidop	no	no	0.918	0.814	0.521	4e-53
A5PJ65	196	Protein RER1 OS=Bos tauru	yes	no	0.903	0.903	0.535	7e-53
Q5R5U4	196	Protein RER1 OS=Pongo abe	yes	no	0.903	0.903	0.524	1e-51
O15258	196	Protein RER1 OS=Homo sapi	yes	no	0.903	0.903	0.524	1e-51
Q498C8	196	Protein RER1 OS=Rattus no	yes	no	0.903	0.903	0.519	1e-51
Q9CQU3	196	Protein RER1 OS=Mus muscu	yes	no	0.903	0.903	0.519	1e-51
Q5ZHM5	196	Protein RER1 OS=Gallus ga	yes	no	0.903	0.903	0.524	2e-51

>sp|Q9ZWI7|RER1C_ARATH Protein RER1C OS=Arabidopsis thaliana GN=RER1C PE=2 SV=1

 Score =  247 bits (631), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 122/178 (68%), Positives = 144/178 (80%), Gaps = 2/178 (1%)

Query: 13  EDFSSSSSSTSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQ 72
           +D   SS S+SP  A++R  +  S+R QHLLDK+VPHVL+RW+ CL VV IY VRVY V+
Sbjct: 22  DDNLQSSDSSSPADAVNRLIHAFSQRQQHLLDKTVPHVLYRWIACLCVVLIYIVRVYFVE 81

Query: 73  GFYIITYGLGIYLLNLLMGFLSPQIDPEYS--DGPTLPTRGSDEFRPFVRRLPEFKFWYC 130
           GFYIITY +GIYLLNL++ FLSPQ DPE S   G +LPTR SDE+RPFVRRLPEFKFW  
Sbjct: 82  GFYIITYAIGIYLLNLIIAFLSPQEDPEASLTSGGSLPTRRSDEYRPFVRRLPEFKFWLS 141

Query: 131 VTRSFCIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGKQ 188
           + R+F IGF++TFF  FDVPVFWPILLFYW+MLF LTMR+QI HMIKYRYVPFS GK+
Sbjct: 142 IIRAFIIGFMMTFFEVFDVPVFWPILLFYWVMLFFLTMRKQIQHMIKYRYVPFSFGKK 199

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment.
Arabidopsis thaliana (taxid: 3702)

>sp|O48670|RER1A_ARATH Protein RER1A OS=Arabidopsis thaliana GN=RER1A PE=2 SV=1

 Score =  244 bits (623), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 114/176 (64%), Positives = 136/176 (77%), Gaps = 3/176 (1%)

Query: 16  SSSSSSTSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFY 75
            S   S S    + +  +   R YQH LDK+ PH  +RW+  L V  IY +RVY +QGFY
Sbjct: 3   ESGGDSGSVATPVQQRAHEAWRIYQHYLDKTTPHANYRWIGTLVVALIYCLRVYYIQGFY 62

Query: 76  IITYGLGIYLLNLLMGFLSPQIDPE---YSDGPTLPTRGSDEFRPFVRRLPEFKFWYCVT 132
           II YGLGIYLLNLL+GFLSP +DPE    SDGP+LPTRGSDEF+PF+RRLPEFKFWY +T
Sbjct: 63  IIAYGLGIYLLNLLIGFLSPLVDPEAGGVSDGPSLPTRGSDEFKPFIRRLPEFKFWYSMT 122

Query: 133 RSFCIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGKQ 188
           ++FCI F++TFFS FDVPVFWPILL YW++LF LTMRRQI HMIKY+Y+PFS GKQ
Sbjct: 123 KAFCIAFLMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYKYIPFSFGKQ 178

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment.

Arabidopsis thaliana (taxid: 3702)

>sp|O48671|RER1B_ARATH Protein RER1B OS=Arabidopsis thaliana GN=RER1B PE=2 SV=2

 Score =  235 bits (599), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 110/175 (62%), Positives = 135/175 (77%), Gaps = 2/175 (1%)

Query: 16  SSSSSSTSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFY 75
            S   S S    + +  +   R YQ+ LDK+ PH  +RW+  L    IY +RVY + GFY
Sbjct: 3   GSGGDSGSMATPVQKKVHEAWRVYQYYLDKTTPHSTNRWIGTLVFFLIYCLRVYSIHGFY 62

Query: 76  IITYGLGIYLLNLLMGFLSPQIDPEY--SDGPTLPTRGSDEFRPFVRRLPEFKFWYCVTR 133
           II+YGLGIYLLNLL+GFLSP +DPE   SDG TLPTRGSDEF+PF+RRLPEFKFWY +T+
Sbjct: 63  IISYGLGIYLLNLLIGFLSPLVDPELEVSDGATLPTRGSDEFKPFIRRLPEFKFWYSMTK 122

Query: 134 SFCIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGKQ 188
           +FCI F++TFFS FDVPVFWPILL YW++LF LTMRRQI HMIK++Y+PFS+GKQ
Sbjct: 123 AFCIAFLMTFFSVFDVPVFWPILLCYWVVLFVLTMRRQIAHMIKHKYIPFSIGKQ 177

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZPV7|RER1D_ARATH Protein RER1D OS=Arabidopsis thaliana GN=At2g18240 PE=2 SV=2

 Score =  207 bits (527), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 95/182 (52%), Positives = 132/182 (72%), Gaps = 2/182 (1%)

Query: 13  EDFSSSSSSTSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQ 72
           E  S + + T   + +++W+   S+ +Q+ LD+S P+++ RW+V L    IY  RVY V 
Sbjct: 4   EPGSENEADTIVASPLAKWRIEFSKSFQNYLDRSAPNIVRRWLVTLVAAVIYIYRVYSVY 63

Query: 73  GFYIITYGLGIYLLNLLMGFLSPQIDPEYS--DGPTLPTRGSDEFRPFVRRLPEFKFWYC 130
           G+++I+YGL  Y+LNLL+GFLSP++DPE    D  +LP   SDE++PFVRRLPEFKFWY 
Sbjct: 64  GYFVISYGLATYILNLLIGFLSPKVDPELEALDPDSLPVDESDEYKPFVRRLPEFKFWYA 123

Query: 131 VTRSFCIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGKQVL 190
            T++F + FV+TFFS  DVPVFWPILL YWL+L++LTM+R I+HM KYRY PF + K V 
Sbjct: 124 ATKAFVVAFVMTFFSFLDVPVFWPILLCYWLVLYSLTMKRLIVHMFKYRYFPFDVRKPVK 183

Query: 191 LI 192
           L+
Sbjct: 184 LL 185

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment.

Arabidopsis thaliana (taxid: 3702)

>sp|A5PJ65|RER1_BOVIN Protein RER1 OS=Bos taurus GN=RER1 PE=2 SV=2

 Score =  206 bits (524), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 97/181 (53%), Positives = 129/181 (71%), Gaps = 4/181 (2%)

Query: 12  AEDFSSSSSSTSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLV 71
           +E  S   S     + + R+   + + YQ  LDKS PH   RWVV L +  IY +RVYL+
Sbjct: 2   SEGDSVGDSVHGKPSVVYRFFTRLGQIYQSWLDKSTPHTAVRWVVTLGLSFIYMIRVYLL 61

Query: 72  QGFYIITYGLGIYLLNLLMGFLSPQIDP----EYSDGPTLPTRGSDEFRPFVRRLPEFKF 127
           QG+YI+TY LGIY LNL + FLSP++DP    +  DGP+LPT+ ++EFRPF+RRLPEFKF
Sbjct: 62  QGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKF 121

Query: 128 WYCVTRSFCIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGK 187
           W+  T+   +  V TFF AF+VPVFWPIL+ Y++MLF +TM+RQI HMIKYRY+PF+ GK
Sbjct: 122 WHAATKGILVAMVCTFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGK 181

Query: 188 Q 188
           +
Sbjct: 182 R 182

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment.

Bos taurus (taxid: 9913)

>sp|Q5R5U4|RER1_PONAB Protein RER1 OS=Pongo abelii GN=RER1 PE=2 SV=1

 Score =  202 bits (514), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 95/181 (52%), Positives = 129/181 (71%), Gaps = 4/181 (2%)

Query: 12  AEDFSSSSSSTSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLV 71
           +E  S   S     + + R+   + + YQ  LDKS P+   RWVV L +  +Y +RVYL+
Sbjct: 2   SEGDSVGESVHGKPSVVYRFFTRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLL 61

Query: 72  QGFYIITYGLGIYLLNLLMGFLSPQIDP----EYSDGPTLPTRGSDEFRPFVRRLPEFKF 127
           QG+YI+TY LGIY LNL + FLSP++DP    +  DGP+LPT+ ++EFRPF+RRLPEFKF
Sbjct: 62  QGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKF 121

Query: 128 WYCVTRSFCIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGK 187
           W+  T+   +  V TFF AF+VPVFWPIL+ Y++MLF +TM+RQI HMIKYRY+PF+ GK
Sbjct: 122 WHAATKGILVAMVCTFFDAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGK 181

Query: 188 Q 188
           +
Sbjct: 182 R 182

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment.

Pongo abelii (taxid: 9601)

>sp|O15258|RER1_HUMAN Protein RER1 OS=Homo sapiens GN=RER1 PE=1 SV=1

 Score =  202 bits (514), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 95/181 (52%), Positives = 129/181 (71%), Gaps = 4/181 (2%)

Query: 12  AEDFSSSSSSTSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLV 71
           +E  S   S     + + R+   + + YQ  LDKS P+   RWVV L +  +Y +RVYL+
Sbjct: 2   SEGDSVGESVHGKPSVVYRFFTRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLL 61

Query: 72  QGFYIITYGLGIYLLNLLMGFLSPQIDP----EYSDGPTLPTRGSDEFRPFVRRLPEFKF 127
           QG+YI+TY LGIY LNL + FLSP++DP    +  DGP+LPT+ ++EFRPF+RRLPEFKF
Sbjct: 62  QGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKF 121

Query: 128 WYCVTRSFCIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGK 187
           W+  T+   +  V TFF AF+VPVFWPIL+ Y++MLF +TM+RQI HMIKYRY+PF+ GK
Sbjct: 122 WHAATKGILVAMVCTFFDAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGK 181

Query: 188 Q 188
           +
Sbjct: 182 R 182

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment.

Homo sapiens (taxid: 9606)

>sp|Q498C8|RER1_RAT Protein RER1 OS=Rattus norvegicus GN=Rer1 PE=2 SV=1

 Score =  202 bits (513), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 94/181 (51%), Positives = 129/181 (71%), Gaps = 4/181 (2%)

Query: 12  AEDFSSSSSSTSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLV 71
           +E  S   S     + + R+   + + YQ  LDKS P+   RWVV L +  +Y +RVYL+
Sbjct: 2   SEGDSVGDSVHGKPSVVYRFFSRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLL 61

Query: 72  QGFYIITYGLGIYLLNLLMGFLSPQIDP----EYSDGPTLPTRGSDEFRPFVRRLPEFKF 127
           QG+YI+TY LGIY LNL + FLSP++DP    +  DGP+LPT+ ++EFRPF+RRLPEFKF
Sbjct: 62  QGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKF 121

Query: 128 WYCVTRSFCIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGK 187
           W+  T+   +  + TFF AF+VPVFWPIL+ Y++MLF +TM+RQI HMIKYRY+PF+ GK
Sbjct: 122 WHAATKGILVAMICTFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGK 181

Query: 188 Q 188
           +
Sbjct: 182 R 182

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment.

Rattus norvegicus (taxid: 10116)

>sp|Q9CQU3|RER1_MOUSE Protein RER1 OS=Mus musculus GN=Rer1 PE=1 SV=1

 Score =  202 bits (513), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 94/181 (51%), Positives = 129/181 (71%), Gaps = 4/181 (2%)

Query: 12  AEDFSSSSSSTSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLV 71
           +E  S   S     + + R+   + + YQ  LDKS P+   RWVV L +  +Y +RVYL+
Sbjct: 2   SEGDSVGDSVHGKPSVVYRFFSRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLL 61

Query: 72  QGFYIITYGLGIYLLNLLMGFLSPQIDP----EYSDGPTLPTRGSDEFRPFVRRLPEFKF 127
           QG+YI+TY LGIY LNL + FLSP++DP    +  DGP+LPT+ ++EFRPF+RRLPEFKF
Sbjct: 62  QGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKF 121

Query: 128 WYCVTRSFCIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGK 187
           W+  T+   +  + TFF AF+VPVFWPIL+ Y++MLF +TM+RQI HMIKYRY+PF+ GK
Sbjct: 122 WHAATKGILVAMICTFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGK 181

Query: 188 Q 188
           +
Sbjct: 182 R 182

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment.

Mus musculus (taxid: 10090)

>sp|Q5ZHM5|RER1_CHICK Protein RER1 OS=Gallus gallus GN=RER1 PE=2 SV=1

 Score =  202 bits (513), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 95/181 (52%), Positives = 128/181 (70%), Gaps = 4/181 (2%)

Query: 12  AEDFSSSSSSTSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLV 71
           +E  S   S     + + R+   + + YQ  LDKS P+   RW+V L +  IY +RVYL+
Sbjct: 2   SEGDSIGESVHGKPSVVYRFFTRLGQIYQSWLDKSTPYTAVRWIVTLGLSFIYMIRVYLL 61

Query: 72  QGFYIITYGLGIYLLNLLMGFLSPQIDP----EYSDGPTLPTRGSDEFRPFVRRLPEFKF 127
           QG+YI+TY LGIY LNL + FLSP++DP    +  DGP+LPTR ++EFRPF+RRLPEFKF
Sbjct: 62  QGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTRQNEEFRPFIRRLPEFKF 121

Query: 128 WYCVTRSFCIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGK 187
           W+  T+   +    TFF AF+VPVFWPIL+ Y++MLF +TM+RQI HMIKYRY+PF+ GK
Sbjct: 122 WHSATKGILVAMACTFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGK 181

Query: 188 Q 188
           +
Sbjct: 182 R 182

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment.

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	196
255567873	206	rer1 protein, putative [Ricinus communis	0.887	0.844	0.772	4e-78
356496931	191	PREDICTED: protein RER1A-like [Glycine m	0.872	0.895	0.754	7e-76
388502768	191	unknown [Lotus japonicus]	0.867	0.890	0.760	1e-74
388509732	192	unknown [Medicago truncatula]	0.872	0.890	0.735	1e-74
224094278	200	predicted protein [Populus trichocarpa]	0.846	0.83	0.771	1e-72
225438813	204	PREDICTED: protein RER1A [Vitis vinifera	0.811	0.779	0.765	2e-71
224084390	204	predicted protein [Populus trichocarpa]	0.846	0.813	0.795	2e-69
356511897	198	PREDICTED: protein RER1A-like [Glycine m	0.892	0.883	0.687	3e-69
225458241	194	PREDICTED: protein RER1B [Vitis vinifera	0.872	0.881	0.658	5e-67
356563586	197	PREDICTED: protein RER1A-like [Glycine m	0.882	0.878	0.672	6e-67

>gi|255567873|ref|XP_002524914.1| rer1 protein, putative [Ricinus communis] gi|223535749|gb|EEF37411.1| rer1 protein, putative [Ricinus communis]

 Score =  296 bits (757), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 136/176 (77%), Positives = 155/176 (88%), Gaps = 2/176 (1%)

Query: 13  EDFSSSSSSTSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQ 72
           ED SS SS+  P   ISRW + VS+RYQHLLDK+VPHVL RW+ CL V  IYA+RVY VQ
Sbjct: 16  EDLSSLSST--PATVISRWTFTVSQRYQHLLDKTVPHVLRRWIACLVVALIYALRVYFVQ 73

Query: 73  GFYIITYGLGIYLLNLLMGFLSPQIDPEYSDGPTLPTRGSDEFRPFVRRLPEFKFWYCVT 132
           GFYIITYGLGIY+LNLL+GFLSPQIDPE  DGPTLPTRGSDEFRPFVRRLPEFKFWY +T
Sbjct: 74  GFYIITYGLGIYMLNLLIGFLSPQIDPEVLDGPTLPTRGSDEFRPFVRRLPEFKFWYSIT 133

Query: 133 RSFCIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGKQ 188
           ++FC+ F++TFF AF+VPVFWPILLFYW++LF LTMRRQIMHMIKY+YVPFS+GKQ
Sbjct: 134 KAFCVAFLMTFFDAFNVPVFWPILLFYWVLLFVLTMRRQIMHMIKYKYVPFSIGKQ 189

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496931|ref|XP_003517318.1| PREDICTED: protein RER1A-like [Glycine max]

 Score =  288 bits (738), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 129/171 (75%), Positives = 151/171 (88%)

Query: 17  SSSSSTSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYI 76
            +    SP A ISRWK+ VS++YQH+LDK+ PHVL RW+ CL V ++Y +RVYLVQGFYI
Sbjct: 4   GAGDDHSPEAVISRWKFAVSQQYQHMLDKTTPHVLRRWIGCLVVAAVYVLRVYLVQGFYI 63

Query: 77  ITYGLGIYLLNLLMGFLSPQIDPEYSDGPTLPTRGSDEFRPFVRRLPEFKFWYCVTRSFC 136
           ++Y LGIY+LNLL+GFLSPQ+DPE SDGPTLPTRGSDEFRPFVRRLPEFKFWY +T++FC
Sbjct: 64  VSYALGIYILNLLIGFLSPQVDPEISDGPTLPTRGSDEFRPFVRRLPEFKFWYSITKAFC 123

Query: 137 IGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGK 187
           I FV+TFFSAFDVPVFWPILLFYW++LFTLTMRRQI HMIKY+YVPFS GK
Sbjct: 124 IAFVMTFFSAFDVPVFWPILLFYWVVLFTLTMRRQISHMIKYKYVPFSFGK 174

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388502768|gb|AFK39450.1| unknown [Lotus japonicus]

 Score =  285 bits (728), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 130/171 (76%), Positives = 149/171 (87%), Gaps = 1/171 (0%)

Query: 19  SSSTSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIIT 78
               SP  AISRWK  +S++YQH+LDK+ PHVL RWV CL V SIY +RVYLV+GFYI++
Sbjct: 4   GGEVSPETAISRWKLGLSQQYQHMLDKTTPHVLRRWVGCLVVASIYVLRVYLVEGFYIVS 63

Query: 79  YGLGIYLLNLLMGFLSPQIDPE-YSDGPTLPTRGSDEFRPFVRRLPEFKFWYCVTRSFCI 137
           Y LGIY+LNLL+GFLSPQ+DPE Y DGPTLPT GSDEFRPFVRRLPEFKFWY +T++FCI
Sbjct: 64  YALGIYILNLLIGFLSPQVDPEVYDDGPTLPTSGSDEFRPFVRRLPEFKFWYSITKAFCI 123

Query: 138 GFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGKQ 188
            FV+TFFSAFDVPVFWPILLFYW++LFTLTMRRQI HMIKY+YVPFS GKQ
Sbjct: 124 AFVMTFFSAFDVPVFWPILLFYWVVLFTLTMRRQISHMIKYKYVPFSFGKQ 174

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388509732|gb|AFK42932.1| unknown [Medicago truncatula]

 Score =  284 bits (727), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 128/174 (73%), Positives = 151/174 (86%), Gaps = 3/174 (1%)

Query: 18  SSSSTSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYII 77
           ++  TSP AAI+RWK+  SRRYQH+LDKS PHV  RW+ CL V  +Y +RVY+VQGFY++
Sbjct: 2   NTEDTSPAAAITRWKFEASRRYQHILDKSTPHVSQRWLGCLVVALVYVLRVYIVQGFYVV 61

Query: 78  TYGLGIYLLNLLMGFLSPQIDPEYSD---GPTLPTRGSDEFRPFVRRLPEFKFWYCVTRS 134
           +YGLGIY+LNLL+GFLSPQ+DPE  D   GP+LPT GSDEFRPFVRRLPEFKFWY +T++
Sbjct: 62  SYGLGIYILNLLIGFLSPQVDPEILDADNGPSLPTSGSDEFRPFVRRLPEFKFWYSITKA 121

Query: 135 FCIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGKQ 188
           FCI FV+TFFSAFDVPVFWPILLFYW++LFTLTMRRQI HMIKY+YVPFS GKQ
Sbjct: 122 FCIAFVMTFFSAFDVPVFWPILLFYWVVLFTLTMRRQIAHMIKYKYVPFSFGKQ 175

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224094278|ref|XP_002310121.1| predicted protein [Populus trichocarpa] gi|222853024|gb|EEE90571.1| predicted protein [Populus trichocarpa]

 Score =  277 bits (709), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 128/166 (77%), Positives = 146/166 (87%)

Query: 23  SPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLG 82
           +P   ISRW + VS+R+QH LDK+VP++L+RW+ CL VV IY +RVYLVQGFYIITYGLG
Sbjct: 21  TPATTISRWSFVVSQRFQHFLDKTVPYILYRWIACLIVVLIYVIRVYLVQGFYIITYGLG 80

Query: 83  IYLLNLLMGFLSPQIDPEYSDGPTLPTRGSDEFRPFVRRLPEFKFWYCVTRSFCIGFVLT 142
           IYLLNLL+GFLSPQIDPE  DGP+LPTRGSDEFRPFVRRL EFKFWY +T++FCI FV+T
Sbjct: 81  IYLLNLLIGFLSPQIDPEIHDGPSLPTRGSDEFRPFVRRLLEFKFWYSITKAFCIAFVMT 140

Query: 143 FFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGKQ 188
           FFS FDVPVFWPILL YW++LF LTMRRQI HMIKYRYVPFS GKQ
Sbjct: 141 FFSVFDVPVFWPILLTYWVVLFVLTMRRQISHMIKYRYVPFSTGKQ 186

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438813|ref|XP_002283333.1| PREDICTED: protein RER1A [Vitis vinifera] gi|296082366|emb|CBI21371.3| unnamed protein product [Vitis vinifera]

 Score =  273 bits (699), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 124/162 (76%), Positives = 144/162 (88%), Gaps = 3/162 (1%)

Query: 30  RWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLL 89
           RW +++SR+YQHLLDKS PH+L+RW+   A+  IY VRVY VQGFYI++YGLGIY+LNLL
Sbjct: 25  RWTHDISRKYQHLLDKSTPHILNRWIGFFAIAFIYIVRVYFVQGFYIVSYGLGIYILNLL 84

Query: 90  MGFLSPQIDPEYS---DGPTLPTRGSDEFRPFVRRLPEFKFWYCVTRSFCIGFVLTFFSA 146
           +GFLSPQ+DPE     DGPTLPTRGSDEFRPFVRRLPEFKFWY +T++FCI FV+TFFS 
Sbjct: 85  IGFLSPQVDPEIQELVDGPTLPTRGSDEFRPFVRRLPEFKFWYSITKAFCIAFVMTFFSV 144

Query: 147 FDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGKQ 188
           FDVPVFWPILLFYW++LFTLTMRRQIMHMIKY+YVPFS GKQ
Sbjct: 145 FDVPVFWPILLFYWMVLFTLTMRRQIMHMIKYKYVPFSFGKQ 186

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224084390|ref|XP_002307281.1| predicted protein [Populus trichocarpa] gi|118482911|gb|ABK93369.1| unknown [Populus trichocarpa] gi|222856730|gb|EEE94277.1| predicted protein [Populus trichocarpa]

 Score =  266 bits (681), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 132/166 (79%), Positives = 146/166 (87%)

Query: 23  SPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLG 82
           +P   ISRW + VSRRYQH LDK+VPH+L+RW+ CL VV IYA+RVYLVQGFYI+TYGLG
Sbjct: 21  TPATTISRWSFAVSRRYQHFLDKTVPHILYRWISCLVVVLIYAIRVYLVQGFYIVTYGLG 80

Query: 83  IYLLNLLMGFLSPQIDPEYSDGPTLPTRGSDEFRPFVRRLPEFKFWYCVTRSFCIGFVLT 142
           IYLLNLL+GFLSPQIDPE  DGPTLPTRGSDEFRPFVRRLPEFKFWY +T++ CI FV+T
Sbjct: 81  IYLLNLLIGFLSPQIDPEIHDGPTLPTRGSDEFRPFVRRLPEFKFWYSITKACCIAFVMT 140

Query: 143 FFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGKQ 188
           FF  FDVPVFWPILL YW+MLF LTMRRQI HMIKYRYVPFS GKQ
Sbjct: 141 FFFVFDVPVFWPILLIYWVMLFLLTMRRQISHMIKYRYVPFSTGKQ 186

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356511897|ref|XP_003524658.1| PREDICTED: protein RER1A-like [Glycine max]

 Score =  266 bits (681), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 123/179 (68%), Positives = 149/179 (83%), Gaps = 4/179 (2%)

Query: 14  DFSSSSSSTSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQG 73
           D      ++SPTA +SRWK+   R++QHLLDKS PHV  RW+   AV  +YA+RVYLVQG
Sbjct: 3   DTGGGGGASSPTATMSRWKFAAWRQFQHLLDKSTPHVGRRWLGFAAVALLYALRVYLVQG 62

Query: 74  FYIITYGLGIYLLNLLMGFLSPQIDPEY----SDGPTLPTRGSDEFRPFVRRLPEFKFWY 129
           FY+++YGLGIY+LNLL+GFLSPQ+DPE     +D PTLP+  SDEFRPFVRRLPEFKFWY
Sbjct: 63  FYVVSYGLGIYILNLLIGFLSPQVDPETVILDADVPTLPSTASDEFRPFVRRLPEFKFWY 122

Query: 130 CVTRSFCIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGKQ 188
            +T++FCI FV+TFFSAFDVPVFWPILLFYW++LF+LTMRRQI HMIKY+Y+PFS GKQ
Sbjct: 123 SITKAFCIAFVMTFFSAFDVPVFWPILLFYWVVLFSLTMRRQISHMIKYKYLPFSSGKQ 181

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458241|ref|XP_002282050.1| PREDICTED: protein RER1B [Vitis vinifera] gi|302142515|emb|CBI19718.3| unnamed protein product [Vitis vinifera]

 Score =  259 bits (661), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 114/173 (65%), Positives = 145/173 (83%), Gaps = 2/173 (1%)

Query: 18  SSSSTSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYII 77
              + S  A +++WK + SR +QH LDKS PH +HRW+  LAV +IY +RVY VQGFYI+
Sbjct: 5   EGDAASTVAPLAKWKNDFSRAFQHYLDKSTPHPVHRWLGTLAVAAIYVLRVYYVQGFYIV 64

Query: 78  TYGLGIYLLNLLMGFLSPQIDPEYS--DGPTLPTRGSDEFRPFVRRLPEFKFWYCVTRSF 135
           +YGLGIY+LNLL+GFLSP++DPE    DG +LPT+GSDEF+PF+RRLPEFKFWY +T++F
Sbjct: 65  SYGLGIYILNLLIGFLSPKVDPELEVLDGASLPTKGSDEFKPFIRRLPEFKFWYSITKAF 124

Query: 136 CIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGKQ 188
           C+ F++TFFS FDVPVFWPILL YW++LF LTM+RQIMHMIKY+YVPFS+GKQ
Sbjct: 125 CVAFLMTFFSVFDVPVFWPILLCYWIVLFVLTMKRQIMHMIKYKYVPFSIGKQ 177

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563586|ref|XP_003550042.1| PREDICTED: protein RER1A-like [Glycine max]

 Score =  259 bits (661), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 119/177 (67%), Positives = 143/177 (80%), Gaps = 4/177 (2%)

Query: 16  SSSSSSTSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFY 75
            +     SPTAA+SRWK+   R+YQHLLDKS PHV  RW+   AV  +Y +RVY V+GFY
Sbjct: 2   DTGGGGASPTAAMSRWKFAAWRQYQHLLDKSTPHVGRRWLGFAAVALLYLLRVYFVEGFY 61

Query: 76  IITYGLGIYLLNLLMGFLSPQIDPE----YSDGPTLPTRGSDEFRPFVRRLPEFKFWYCV 131
           +++YGLGIY+LNLL+GFLSPQ+DPE     +D P LP   SDEFRPFVRRLPEFKFWY +
Sbjct: 62  VVSYGLGIYILNLLIGFLSPQVDPETAILNADDPILPIAASDEFRPFVRRLPEFKFWYSI 121

Query: 132 TRSFCIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGKQ 188
           T++FCI FV+TFFS FDVPVFWPILLFYW++LF+LTMRRQI HMIKY+Y+PFS GKQ
Sbjct: 122 TKAFCIAFVMTFFSVFDVPVFWPILLFYWVVLFSLTMRRQISHMIKYKYLPFSSGKQ 178

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	196
TAIR|locus:2136373	191	ATRER1A "AT4G39220" [Arabidops	0.775	0.795	0.716	1.6e-61
TAIR|locus:2058583	212	ATRER1C1 "AT2G23310" [Arabidop	0.780	0.721	0.735	3.4e-61
TAIR|locus:2049354	195	RER1B "AT2G21600" [Arabidopsis	0.775	0.779	0.694	5.7e-59
TAIR|locus:2062185	221	AT2G18240 "AT2G18240" [Arabido	0.831	0.737	0.557	6.5e-51
UNIPROTKB|A5PJ65	196	RER1 "Protein RER1" [Bos tauru	0.765	0.765	0.603	2.2e-50
UNIPROTKB|O15258	196	RER1 "Protein RER1" [Homo sapi	0.765	0.765	0.590	1.2e-49
MGI|MGI:1915080	196	Rer1 "RER1 retention in endopl	0.765	0.765	0.584	1.5e-49
RGD|1306324	196	Rer1 "RER1 retention in endopl	0.765	0.765	0.584	1.5e-49
UNIPROTKB|Q5ZHM5	196	RER1 "Protein RER1" [Gallus ga	0.765	0.765	0.590	2e-49
UNIPROTKB|F6XF58	196	RER1 "Uncharacterized protein"	0.765	0.765	0.584	3.2e-49

TAIR|locus:2136373 ATRER1A "AT4G39220" [Arabidopsis thaliana (taxid:3702)]

 Score = 629 (226.5 bits), Expect = 1.6e-61, P = 1.6e-61
 Identities = 111/155 (71%), Positives = 130/155 (83%)

Query:    37 RRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLLMGFLSPQ 96
             R YQH LDK+ PH  +RW+  L V  IY +RVY +QGFYII YGLGIYLLNLL+GFLSP 
Sbjct:    24 RIYQHYLDKTTPHANYRWIGTLVVALIYCLRVYYIQGFYIIAYGLGIYLLNLLIGFLSPL 83

Query:    97 IDPE---YSDGPTLPTRGSDEFRPFVRRLPEFKFWYCVTRSFCIGFVLTFFSAFDVPVFW 153
             +DPE    SDGP+LPTRGSDEF+PF+RRLPEFKFWY +T++FCI F++TFFS FDVPVFW
Sbjct:    84 VDPEAGGVSDGPSLPTRGSDEFKPFIRRLPEFKFWYSMTKAFCIAFLMTFFSVFDVPVFW 143

Query:   154 PILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGKQ 188
             PILL YW++LF LTMRRQI HMIKY+Y+PFS GKQ
Sbjct:   144 PILLCYWIVLFVLTMRRQIAHMIKYKYIPFSFGKQ 178

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=IMP

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:2058583 ATRER1C1 "AT2G23310" [Arabidopsis thaliana (taxid:3702)]

 Score = 626 (225.4 bits), Expect = 3.4e-61, P = 3.4e-61
 Identities = 114/155 (73%), Positives = 131/155 (84%)

Query:    36 SRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLLMGFLSP 95
             S+R QHLLDK+VPHVL+RW+ CL VV IY VRVY V+GFYIITY +GIYLLNL++ FLSP
Sbjct:    45 SQRQQHLLDKTVPHVLYRWIACLCVVLIYIVRVYFVEGFYIITYAIGIYLLNLIIAFLSP 104

Query:    96 QIDPEYS--DGPTLPTRGSDEFRPFVRRLPEFKFWYCVTRSFCIGFVLTFFSAFDVPVFW 153
             Q DPE S   G +LPTR SDE+RPFVRRLPEFKFW  + R+F IGF++TFF  FDVPVFW
Sbjct:   105 QEDPEASLTSGGSLPTRRSDEYRPFVRRLPEFKFWLSIIRAFIIGFMMTFFEVFDVPVFW 164

Query:   154 PILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGKQ 188
             PILLFYW+MLF LTMR+QI HMIKYRYVPFS GK+
Sbjct:   165 PILLFYWVMLFFLTMRKQIQHMIKYRYVPFSFGKK 199

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA;ISS

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=NAS

GO:0045185 "maintenance of protein location" evidence=IGI

TAIR|locus:2049354 RER1B "AT2G21600" [Arabidopsis thaliana (taxid:3702)]

 Score = 605 (218.0 bits), Expect = 5.7e-59, P = 5.7e-59
 Identities = 107/154 (69%), Positives = 129/154 (83%)

Query:    37 RRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLLMGFLSPQ 96
             R YQ+ LDK+ PH  +RW+  L    IY +RVY + GFYII+YGLGIYLLNLL+GFLSP 
Sbjct:    24 RVYQYYLDKTTPHSTNRWIGTLVFFLIYCLRVYSIHGFYIISYGLGIYLLNLLIGFLSPL 83

Query:    97 IDPEY--SDGPTLPTRGSDEFRPFVRRLPEFKFWYCVTRSFCIGFVLTFFSAFDVPVFWP 154
             +DPE   SDG TLPTRGSDEF+PF+RRLPEFKFWY +T++FCI F++TFFS FDVPVFWP
Sbjct:    84 VDPELEVSDGATLPTRGSDEFKPFIRRLPEFKFWYSMTKAFCIAFLMTFFSVFDVPVFWP 143

Query:   155 ILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGKQ 188
             ILL YW++LF LTMRRQI HMIK++Y+PFS+GKQ
Sbjct:   144 ILLCYWVVLFVLTMRRQIAHMIKHKYIPFSIGKQ 177

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=IMP

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005801 "cis-Golgi network" evidence=TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

TAIR|locus:2062185 AT2G18240 "AT2G18240" [Arabidopsis thaliana (taxid:3702)]

 Score = 529 (191.3 bits), Expect = 6.5e-51, P = 6.5e-51
 Identities = 92/165 (55%), Positives = 124/165 (75%)

Query:    30 RWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLL 89
             +W+   S+ +Q+ LD+S P+++ RW+V L    IY  RVY V G+++I+YGL  Y+LNLL
Sbjct:    21 KWRIEFSKSFQNYLDRSAPNIVRRWLVTLVAAVIYIYRVYSVYGYFVISYGLATYILNLL 80

Query:    90 MGFLSPQIDPEYS--DGPTLPTRGSDEFRPFVRRLPEFKFWYCVTRSFCIGFVLTFFSAF 147
             +GFLSP++DPE    D  +LP   SDE++PFVRRLPEFKFWY  T++F + FV+TFFS  
Sbjct:    81 IGFLSPKVDPELEALDPDSLPVDESDEYKPFVRRLPEFKFWYAATKAFVVAFVMTFFSFL 140

Query:   148 DVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGKQVLLI 192
             DVPVFWPILL YWL+L++LTM+R I+HM KYRY PF + K V L+
Sbjct:   141 DVPVFWPILLCYWLVLYSLTMKRLIVHMFKYRYFPFDVRKPVKLL 185

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA;ISS

UNIPROTKB|A5PJ65 RER1 "Protein RER1" [Bos taurus (taxid:9913)]

 Score = 524 (189.5 bits), Expect = 2.2e-50, P = 2.2e-50
 Identities = 93/154 (60%), Positives = 119/154 (77%)

Query:    39 YQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLLMGFLSPQID 98
             YQ  LDKS PH   RWVV L +  IY +RVYL+QG+YI+TY LGIY LNL + FLSP++D
Sbjct:    29 YQSWLDKSTPHTAVRWVVTLGLSFIYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVD 88

Query:    99 P----EYSDGPTLPTRGSDEFRPFVRRLPEFKFWYCVTRSFCIGFVLTFFSAFDVPVFWP 154
             P    +  DGP+LPT+ ++EFRPF+RRLPEFKFW+  T+   +  V TFF AF+VPVFWP
Sbjct:    89 PSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKGILVAMVCTFFEAFNVPVFWP 148

Query:   155 ILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGKQ 188
             IL+ Y++MLF +TM+RQI HMIKYRY+PF+ GK+
Sbjct:   149 ILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGKR 182

GO:0030173 "integral to Golgi membrane" evidence=IEA

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=IEA

UNIPROTKB|O15258 RER1 "Protein RER1" [Homo sapiens (taxid:9606)]

 Score = 517 (187.1 bits), Expect = 1.2e-49, P = 1.2e-49
 Identities = 91/154 (59%), Positives = 119/154 (77%)

Query:    39 YQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLLMGFLSPQID 98
             YQ  LDKS P+   RWVV L +  +Y +RVYL+QG+YI+TY LGIY LNL + FLSP++D
Sbjct:    29 YQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVD 88

Query:    99 P----EYSDGPTLPTRGSDEFRPFVRRLPEFKFWYCVTRSFCIGFVLTFFSAFDVPVFWP 154
             P    +  DGP+LPT+ ++EFRPF+RRLPEFKFW+  T+   +  V TFF AF+VPVFWP
Sbjct:    89 PSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKGILVAMVCTFFDAFNVPVFWP 148

Query:   155 ILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGKQ 188
             IL+ Y++MLF +TM+RQI HMIKYRY+PF+ GK+
Sbjct:   149 ILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGKR 182

GO:0030173 "integral to Golgi membrane" evidence=IDA

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=IDA

GO:0003674 "molecular_function" evidence=ND

MGI|MGI:1915080 Rer1 "RER1 retention in endoplasmic reticulum 1 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 516 (186.7 bits), Expect = 1.5e-49, P = 1.5e-49
 Identities = 90/154 (58%), Positives = 119/154 (77%)

Query:    39 YQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLLMGFLSPQID 98
             YQ  LDKS P+   RWVV L +  +Y +RVYL+QG+YI+TY LGIY LNL + FLSP++D
Sbjct:    29 YQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVD 88

Query:    99 P----EYSDGPTLPTRGSDEFRPFVRRLPEFKFWYCVTRSFCIGFVLTFFSAFDVPVFWP 154
             P    +  DGP+LPT+ ++EFRPF+RRLPEFKFW+  T+   +  + TFF AF+VPVFWP
Sbjct:    89 PSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKGILVAMICTFFEAFNVPVFWP 148

Query:   155 ILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGKQ 188
             IL+ Y++MLF +TM+RQI HMIKYRY+PF+ GK+
Sbjct:   149 ILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGKR 182

GO:0003674 "molecular_function" evidence=ND

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030173 "integral to Golgi membrane" evidence=ISO

RGD|1306324 Rer1 "RER1 retention in endoplasmic reticulum 1 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 516 (186.7 bits), Expect = 1.5e-49, P = 1.5e-49
 Identities = 90/154 (58%), Positives = 119/154 (77%)

Query:    39 YQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLLMGFLSPQID 98
             YQ  LDKS P+   RWVV L +  +Y +RVYL+QG+YI+TY LGIY LNL + FLSP++D
Sbjct:    29 YQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVD 88

Query:    99 P----EYSDGPTLPTRGSDEFRPFVRRLPEFKFWYCVTRSFCIGFVLTFFSAFDVPVFWP 154
             P    +  DGP+LPT+ ++EFRPF+RRLPEFKFW+  T+   +  + TFF AF+VPVFWP
Sbjct:    89 PSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKGILVAMICTFFEAFNVPVFWP 148

Query:   155 ILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGKQ 188
             IL+ Y++MLF +TM+RQI HMIKYRY+PF+ GK+
Sbjct:   149 ILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGKR 182

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=IEA;ISO

GO:0030173 "integral to Golgi membrane" evidence=IEA;ISO

UNIPROTKB|Q5ZHM5 RER1 "Protein RER1" [Gallus gallus (taxid:9031)]

 Score = 515 (186.3 bits), Expect = 2.0e-49, P = 2.0e-49
 Identities = 91/154 (59%), Positives = 118/154 (76%)

Query:    39 YQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLLMGFLSPQID 98
             YQ  LDKS P+   RW+V L +  IY +RVYL+QG+YI+TY LGIY LNL + FLSP++D
Sbjct:    29 YQSWLDKSTPYTAVRWIVTLGLSFIYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVD 88

Query:    99 P----EYSDGPTLPTRGSDEFRPFVRRLPEFKFWYCVTRSFCIGFVLTFFSAFDVPVFWP 154
             P    +  DGP+LPTR ++EFRPF+RRLPEFKFW+  T+   +    TFF AF+VPVFWP
Sbjct:    89 PSLMEDSDDGPSLPTRQNEEFRPFIRRLPEFKFWHSATKGILVAMACTFFEAFNVPVFWP 148

Query:   155 ILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGKQ 188
             IL+ Y++MLF +TM+RQI HMIKYRY+PF+ GK+
Sbjct:   149 ILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGKR 182

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=IEA

GO:0030173 "integral to Golgi membrane" evidence=IEA

UNIPROTKB|F6XF58 RER1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 513 (185.6 bits), Expect = 3.2e-49, P = 3.2e-49
 Identities = 90/154 (58%), Positives = 118/154 (76%)

Query:    39 YQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLLMGFLSPQID 98
             YQ  LDKS P+   RWVV L +  +Y +RVYL+QG+YI+TY LGIY LNL + FLSP++D
Sbjct:    29 YQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVD 88

Query:    99 P----EYSDGPTLPTRGSDEFRPFVRRLPEFKFWYCVTRSFCIGFVLTFFSAFDVPVFWP 154
             P    +  DGP+LPT+ ++EFRPF+RRLPEFKFW+  T+   +    TFF AF+VPVFWP
Sbjct:    89 PSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKGILVAMACTFFEAFNVPVFWP 148

Query:   155 ILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGKQ 188
             IL+ Y++MLF +TM+RQI HMIKYRY+PF+ GK+
Sbjct:   149 ILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGKR 182

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9CQU3	RER1_MOUSE	No assigned EC number	0.5193	0.9030	0.9030	yes	no
P25560	RER1_YEAST	No assigned EC number	0.4611	0.8928	0.9308	yes	no
Q5ZHM5	RER1_CHICK	No assigned EC number	0.5248	0.9030	0.9030	yes	no
P52879	RER1_CAEEL	No assigned EC number	0.5149	0.8265	0.8481	yes	no
O15258	RER1_HUMAN	No assigned EC number	0.5248	0.9030	0.9030	yes	no
Q5R5U4	RER1_PONAB	No assigned EC number	0.5248	0.9030	0.9030	yes	no
A5PJ65	RER1_BOVIN	No assigned EC number	0.5359	0.9030	0.9030	yes	no
Q9ZWI7	RER1C_ARATH	No assigned EC number	0.6853	0.8979	0.8301	yes	no
Q498C8	RER1_RAT	No assigned EC number	0.5193	0.9030	0.9030	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0019001601 hypothetical protein (200 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	196
pfam03248	175	pfam03248, Rer1, Rer1 family	3e-88
COG5249	180	COG5249, RER1, Golgi protein involved in Golgi-to-	6e-56

>gnl|CDD|202582 pfam03248, Rer1, Rer1 family

 Score =  256 bits (656), Expect = 3e-88
 Identities = 93/169 (55%), Positives = 120/169 (71%), Gaps = 7/169 (4%)

Query: 27  AISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLL 86
           A++R+   +SR YQ  LDK+ PH  +RW+  L ++ ++ +RV L QG+Y++ Y LGIYLL
Sbjct: 2   AVTRFTNKLSRTYQRYLDKTTPHTAYRWIFFLFLLFLFILRVILAQGWYVVCYALGIYLL 61

Query: 87  NLLMGFLSPQIDPEYSD-------GPTLPTRGSDEFRPFVRRLPEFKFWYCVTRSFCIGF 139
           NL + FL+P+ DP           GP+LPT   DEFRPF+RRLPEFKFWY  TR+  I  
Sbjct: 62  NLFLAFLTPKFDPSLEQEDEDVEEGPSLPTSNDDEFRPFIRRLPEFKFWYSATRATVIAL 121

Query: 140 VLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGKQ 188
             TFFS FD+PVFWPILL Y+++LF LTMRRQI HMIKY+YVPF +GK 
Sbjct: 122 FCTFFSFFDIPVFWPILLMYFIILFFLTMRRQIKHMIKYKYVPFDIGKP 170

RER1 family protein are involved in involved in the retrieval of some endoplasmic reticulum membrane proteins from the early golgi compartment. The C terminus of yeast Rer1p interacts with a coatomer complex. Length = 175

>gnl|CDD|227574 COG5249, RER1, Golgi protein involved in Golgi-to-ER retrieval [Intracellular trafficking and secretion]

 Score =  174 bits (443), Expect = 6e-56
 Identities = 70/156 (44%), Positives = 96/156 (61%), Gaps = 4/156 (2%)

Query: 37  RRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLLMGFLSPQ 96
             YQH LD+  P    RW +   +  ++ +R++   G+Y+I Y LGIYLLN  + FL+P+
Sbjct: 20  TLYQHYLDRLAPRPDVRWGITGGLFLLFCIRIWSTGGWYLICYCLGIYLLNAFLAFLTPK 79

Query: 97  IDPEYS----DGPTLPTRGSDEFRPFVRRLPEFKFWYCVTRSFCIGFVLTFFSAFDVPVF 152
            D  +     D         +EFRPF+RRLPEFKFWY  TR+  +  + ++F  FDVPVF
Sbjct: 80  FDMSFEQIEDDDEIEEGEKDNEFRPFIRRLPEFKFWYFSTRATGMALIGSYFGIFDVPVF 139

Query: 153 WPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGKQ 188
           WPIL+ Y++ L   T RRQI HM KYRY PF +GK+
Sbjct: 140 WPILVVYFIFLVFYTARRQIQHMKKYRYNPFDIGKK 175

Length = 180

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	196
KOG1688	188	consensus Golgi proteins involved in ER retention	100.0
PF03248	176	Rer1: Rer1 family; InterPro: IPR004932 RER1 family	100.0
COG5249	180	RER1 Golgi protein involved in Golgi-to-ER retriev	100.0
PF09973	233	DUF2208: Predicted membrane protein (DUF2208); Int	84.06

>KOG1688 consensus Golgi proteins involved in ER retention (RER) [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.6e-88  Score=565.91  Aligned_cols=180  Identities=60%  Similarity=1.110  Sum_probs=172.7

Q ss_pred             hccCCC-CCCCchhHHHHHHHHHHHHHHHHhhccCccchhHHHHHHHHHHHHHHhhheeccEEEeehhHHHHHHHHHHhh
Q 029276           14 DFSSSS-SSTSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLLMGF   92 (196)
Q Consensus        14 ~~~~~~-~~~~~~~~~~~~~~~~~~~yQ~~LDk~tp~~~~RW~~~~~L~~lf~lRv~~~~g~YiVtY~LgIylLnlfi~F   92 (196)
                      |.|+++ +++++++|+.++.+++++.||+||||+|||+..||+++++++++|++||+..|||||||||||||+||+||+|
T Consensus         2 e~~~~~~~~~~~a~~v~~~~~~~~~~yQ~yLDr~tPh~~~RW~~tl~l~~iy~iRi~~~~G~YII~Y~LgIYlLNlfiaF   81 (188)
T KOG1688|consen    2 EDDSSGEDSGGVASPVKRFFHELSQLYQHYLDRSTPHTAVRWVVTLVLLLIYCIRIYLVQGFYIITYALGIYLLNLFIAF   81 (188)
T ss_pred             CccccCCCCCCcchHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            344444 5667889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCC---CCCCCCCCCCCCCCCCcccCCchhHHHHHHHHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHH
Q 029276           93 LSPQIDPEY---SDGPTLPTRGSDEFRPFVRRLPEFKFWYCVTRSFCIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMR  169 (196)
Q Consensus        93 LtPk~Dp~l---~eg~~Lp~~~~dEFrPFiRRLPEFkFW~~~trat~ia~~~Tff~~fDiPVFWPILl~YFi~Lf~lTm~  169 (196)
                      ||||+|||+   |||+.||++++||||||||||||||||+++|||+++|+.||||++||+|||||||++||++||++|||
T Consensus        82 LtPk~Dp~~~~~~dg~~Lpt~~~dEFrPFIRRLPEFKFW~s~~ka~~ia~~~tfF~~fdVPVFwPILl~Y~i~lf~ltmr  161 (188)
T KOG1688|consen   82 LTPKVDPELQDADDGPSLPTRKSDEFRPFIRRLPEFKFWYSSTKATLIALLCTFFSIFDVPVFWPILLMYFIVLFFLTMR  161 (188)
T ss_pred             hCCCCCchhhcccCCCCCCCCCccccchHHHcCchhHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHH
Confidence            999999997   78999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhcccCCCcchhhhhhc
Q 029276          170 RQIMHMIKYRYVPFSLGKQVLLIY  193 (196)
Q Consensus       170 rqI~HMiKyrYvPf~~gK~~y~~~  193 (196)
                      |||+|||||||+||+.||++|++-
T Consensus       162 RqI~HMiKyrY~Pf~~gK~~~~~~  185 (188)
T KOG1688|consen  162 RQIAHMIKYRYIPFDIGKKKYGSH  185 (188)
T ss_pred             HHHHHHHhhcccccccCchhhhcc
Confidence            999999999999999999999763

>PF03248 Rer1: Rer1 family; InterPro: IPR004932 RER1 family proteins are involved in involved in the retrieval of some endoplasmic reticulum membrane proteins from the early golgi compartment

Probab=100.00  E-value=3.2e-86  Score=552.12  Aligned_cols=165  Identities=56%  Similarity=1.109  Sum_probs=160.8

Q ss_pred             HHHHHHHHHHHHHHHhhccCccchhHHHHHHHHHHHHHHhhheeccEEEeehhHHHHHHHHHHhhcCCCCCCCC------
Q 029276           28 ISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLLMGFLSPQIDPEY------  101 (196)
Q Consensus        28 ~~~~~~~~~~~yQ~~LDk~tp~~~~RW~~~~~L~~lf~lRv~~~~g~YiVtY~LgIylLnlfi~FLtPk~Dp~l------  101 (196)
                      ++++.++++++||++|||||||++.||+++++|+++|++||+..|||||||||||||+||+||+|||||+||++      
T Consensus         2 ~~~~~~~~~~~yQ~~LDk~tp~~~~RW~~~~~L~~lf~~Rv~~~~g~YiVtY~LgIylLnlfi~FltP~~Dp~l~~~~~~   81 (176)
T PF03248_consen    2 VSRFFQKLKRTYQSYLDKSTPYTKYRWIAFLVLLFLFLLRVYYLQGWYIVTYALGIYLLNLFIAFLTPKFDPELEQDEED   81 (176)
T ss_pred             HHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHhcceeeehHHHHHHHHHHHHHHhCCcCcccccccccc
Confidence            56899999999999999999999999999999999999999999999999999999999999999999999988      


Q ss_pred             -CCCCCCCC--CCCCCCCCcccCCchhHHHHHHHHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 029276          102 -SDGPTLPT--RGSDEFRPFVRRLPEFKFWYCVTRSFCIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKY  178 (196)
Q Consensus       102 -~eg~~Lp~--~~~dEFrPFiRRLPEFkFW~~~trat~ia~~~Tff~~fDiPVFWPILl~YFi~Lf~lTm~rqI~HMiKy  178 (196)
                       |||+.||+  +++||||||+|||||||||++||||+++|++||||+++|||||||||++|||+||++||||||+|||||
T Consensus        82 ~~~g~~Lp~~~~~~~EFrPFiRRlPEFkFW~~~tka~~i~~~~tff~~fdiPVFWPiLl~Yfi~lf~~tm~~qI~hMiKy  161 (176)
T PF03248_consen   82 EEEGPELPTTNENDDEFRPFIRRLPEFKFWYSCTKATVISLFCTFFPFFDIPVFWPILLVYFIVLFVLTMKRQIKHMIKY  161 (176)
T ss_pred             ccccccCCCCcccccccCCccccchhhHHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence             35779999  899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCcchhhhhh
Q 029276          179 RYVPFSLGKQVLLI  192 (196)
Q Consensus       179 rYvPf~~gK~~y~~  192 (196)
                      ||+|||+||++|++
T Consensus       162 ~Y~Pf~~gK~~y~~  175 (176)
T PF03248_consen  162 RYVPFDFGKKKYGR  175 (176)
T ss_pred             CCCCccccchhccC
Confidence            99999999999986

The C terminus of yeast Rer1p interacts with a coatomer complex [].; GO: 0016021 integral to membrane

>COG5249 RER1 Golgi protein involved in Golgi-to-ER retrieval [Intracellular trafficking and secretion]

Probab=100.00  E-value=1.2e-75  Score=481.13  Aligned_cols=175  Identities=42%  Similarity=0.835  Sum_probs=162.6

Q ss_pred             hhccCCCCCCCchhHHHHHHHHHHHHHHHHhhccCccchhHHHHHHHHHHHHHHhhheeccEEEeehhHHHHHHHHHHhh
Q 029276           13 EDFSSSSSSTSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLLMGF   92 (196)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~yQ~~LDk~tp~~~~RW~~~~~L~~lf~lRv~~~~g~YiVtY~LgIylLnlfi~F   92 (196)
                      ||+|+++..     .+....+.+++.||+||||.+||+..||..+++|+++||.||...+|||+|||+||||+||+|++|
T Consensus         1 md~~~~~~~-----n~~~k~n~~k~LyqhylDr~~P~~~~RW~i~ggL~~lf~iRI~~~~gwY~icY~LgiyLLn~flaF   75 (180)
T COG5249           1 MDYDSSDTM-----NLITKMNDLKTLYQHYLDRLAPRPDVRWGITGGLFLLFCIRIWSTGGWYLICYCLGIYLLNAFLAF   75 (180)
T ss_pred             CCchhHHHH-----HHHHHHHHHHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHH
Confidence            566665532     255668899999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCC----CCCCCCCCCCCCCCCCcccCCchhHHHHHHHHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHH
Q 029276           93 LSPQIDPEY----SDGPTLPTRGSDEFRPFVRRLPEFKFWYCVTRSFCIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTM  168 (196)
Q Consensus        93 LtPk~Dp~l----~eg~~Lp~~~~dEFrPFiRRLPEFkFW~~~trat~ia~~~Tff~~fDiPVFWPILl~YFi~Lf~lTm  168 (196)
                      ||||+||+.    ||+....+++|||||||||||||||||+++||||++|++.|+|.+||||||||||++|||+|+..||
T Consensus        76 LTPKfdms~eq~e~d~eieeg~kd~EFrPFIRrLPEFkFWy~s~rat~~aLi~s~F~IfDvPVfwPILvvYfi~l~f~t~  155 (180)
T COG5249          76 LTPKFDMSFEQIEDDDEIEEGEKDNEFRPFIRRLPEFKFWYFSTRATGMALIGSYFGIFDVPVFWPILVVYFIFLVFYTA  155 (180)
T ss_pred             hCCCCcccHhhhccccccccccccchhhHHHHcCchhHHHHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHH
Confidence            999999998    3444555679999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhcccCCCcchhhhhh
Q 029276          169 RRQIMHMIKYRYVPFSLGKQVLLI  192 (196)
Q Consensus       169 ~rqI~HMiKyrYvPf~~gK~~y~~  192 (196)
                      |||||||+||||+|||.||++|++
T Consensus       156 rRqIqHM~KYrY~PfdigKkky~s  179 (180)
T COG5249         156 RRQIQHMKKYRYNPFDIGKKKYKS  179 (180)
T ss_pred             HHHHHHHHHhcCCchhhhhhhhcc
Confidence            999999999999999999999986

>PF09973 DUF2208: Predicted membrane protein (DUF2208); InterPro: IPR009198 There are currently no experimental data for members of this group or their homologues

Probab=84.06  E-value=2.2  Score=37.85  Aligned_cols=43  Identities=16%  Similarity=0.504  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHh
Q 029276          130 CVTRSFCIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMI  176 (196)
Q Consensus       130 ~~trat~ia~~~Tff~~fDiPVFWPILl~YFi~Lf~lTm~rqI~HMi  176 (196)
                      +..-.+++|+++++++..    ||++.++||++.++++|.-.++++-
T Consensus         7 sq~~il~fa~Vla~~p~y----~~~~filYfiv~~~i~~~~~~Rs~r   49 (233)
T PF09973_consen    7 SQVSILLFAAVLAFFPQY----YFEVFILYFIVFFGIMIVMGIRSYR   49 (233)
T ss_pred             HHHHHHHHHHHHHhccHH----HHHHHHHHHHHHHHHHHHHhhhhcc
Confidence            445567888999988643    6899999999999999998888876

However, these proteins are predicted to contain three or more transmembrane segments.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	196
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 8e-05
 Identities = 26/115 (22%), Positives = 40/115 (34%), Gaps = 29/115 (25%)

Query: 32  KYNVSRRYQHL-----LDKSVPH---VLH------RWVVCLAVVSIYAVRVYLVQGFYII 77
           KYNVSR   +L     L +  P    ++       +  V L V   Y V+  +    + +
Sbjct: 128 KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL 187

Query: 78  TYG-------LGIYLLNLLMGFLSPQIDPEY---SDGPTLPTRGSDEFRPFVRRL 122
                     +   L  LL      QIDP +   SD  +         +  +RRL
Sbjct: 188 NLKNCNSPETVLEMLQKLLY-----QIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00