Citrus Sinensis ID: 029284

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190------
Protein Sequence
MAMSVSIVAVVTALHLIAFVFAVGAERRRSTAKVVPDQYDEMTYCVYSTDASTVYGLSAFGLLLISQAVVNGVTRCLCFGKGLVTGTSSTTWAVFFFIVSWVSFLGAEACLLAGSARNAYHTKYRKIFGGGDLSCATLRKGVFAAGAALTLLSLAGSILYYWAHTRADTGGWEKHRNEGLGMAMQQQQPGNDFEKA
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccccccEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEcccccccEEEccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MAMSVSIVAVVTALHLIAFVFAVgaerrrstakvvpdqydemtycvystdastvyGLSAFGLLLISQAVVNGVTRCLcfgkglvtgtsstTWAVFFFIVSWVSFLGAEACLLAGSARNAYHTKYRkifgggdlscATLRKGVFAAGAALTLLSLAGSILYYWAHtradtggwekhrneglgmamqqqqpgndfeka
Flexible Loop (DISEMBL)
MAMSVSIVAVVTALHLIAFVfavgaerrrstakvvpdqydeMTYCVYSTDASTVYGLSAFGLLLISQAVVNGVTRCLCFGKGLVTGTSSTTWAVFFFIVSWVSFLGAEACLLAGSARNAYHTKYRKIFGGGDLSCATLRKGVFAAGAALTLLSLAGSILYYWAHTRADTGGWEKHRNEGLGmamqqqqpgndfeka
Low Complexity Region (SEG)
MAMSVSIVAVVTALHLIAFVFAVGAERRRSTAKVVPDQYDEMTYCVYSTDASTVYGLSAFGLLLISQAVVNGVTRCLCFGKGLVTGTSSTTWAVFFFIVSWVSFLGAEACLLAGSARNAYHTKYRKIFGGGDLSCATLRKGVFaagaaltllslagsilYYWAHTRADTGGWEKHRNEGLGMAMQQQQPGNDFEKA
Disordered region (IsUnstruct)
****VSIVAVVTALHLIAFVFAVGAERRRSTAKVVPDQYDEMTYCVYSTDASTVYGLSAFGLLLISQAVVNGVTRCLCFGKGLVTGTSSTTWAVFFFIVSWVSFLGAEACLLAGSARNAYHTKYRKIFGGGDLSCATLRKGVFAAGAALTLLSLAGSILYYWAHTRADTGGW************************
Disordered Region (DISOPRED)
**MSVSIVAVVTALHLIAFVFAVGAERRRSTAKVVPDQYDEMTYCVYSTDASTVYGLSAFGLLLISQAVVNGVTRCLCFG*****GTSSTTWAVFFFIVSWVSFLGAEACLLAGSARNAYHTKYRKIFGGGDLSCATLRKGVFAAGAALTLLSLAGSILYYWA*********************************
Disordered Region (DISEMBL)
MAMSVSIVAVVTALHLIAFVFAVGAERRRSTAKVVPDQYDEMTYCVYSTDASTVYGLSAFGLLLISQAVVNGVTRCLCFGKGLVTGTSSTTWAVFFFIVSWVSFLGAEACLLAGSARNAYHTKYRKIFGGGDLSCATLRKGVFAAGAALTLLSLAGSILYYWAHTRADTGGWEKHRNEGLGMAM************
Disordered Region (DISPRO)
*AMSVSIVAVVTALHLIAFVFAVGAERRRSTAKVVPDQYDEMTYCVYSTDASTVYGLSAFGLLLISQAVVNGVTRCLCFGKGLVTGTSSTTWAVFFFIVSWVSFLGAEACLLAGSARNAYHTKYRKIFGGGDLSCATLRKGVFAAGAALTLLSLAGSILYYWAHTRAD****************************
Transmembrane Helix (TMHMM)
ooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAMSVSIVAVVTALHLIAFVFAVGAERRRSTAKVVPDQYDEMTYCVYSTDASTVYGLSAFGLLLISQAVVNGVTRCLCFGKGLVTGTSSTTWAVFFFIVSWVSFLGAEACLLAGSARNAYHTKYRKIFGGGDLSCATLRKGVFAAGAALTLLSLAGSILYYWAHTRADTGGWEKHRNEGLGMAMQQQQPGNDFEKA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	196
224111620	199	predicted protein [Populus trichocarpa]	0.994	0.979	0.792	9e-87
224099405	184	predicted protein [Populus trichocarpa]	0.862	0.918	0.857	5e-80
225424071	193	PREDICTED: uncharacterized protein LOC10	0.979	0.994	0.810	5e-79
297838579	201	hypothetical protein ARALYDRAFT_475940 [	0.994	0.970	0.7	7e-77
18408976	201	uncharacterized protein [Arabidopsis tha	0.994	0.970	0.71	1e-76
388501328	193	unknown [Medicago truncatula]	0.974	0.989	0.708	5e-75
356575582	196	PREDICTED: uncharacterized protein LOC10	0.994	0.994	0.725	1e-72
356536286	195	PREDICTED: uncharacterized protein LOC10	0.994	1.0	0.729	2e-72
449458763	202	PREDICTED: uncharacterized protein LOC10	0.989	0.960	0.658	8e-65
371721838	200	unknown [Allium sativum]	0.974	0.955	0.607	1e-59

>gi|224111620|ref|XP_002315922.1| predicted protein [Populus trichocarpa] gi|222864962|gb|EEF02093.1| predicted protein [Populus trichocarpa]

 Score =  324 bits (831), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 157/198 (79%), Positives = 178/198 (89%), Gaps = 3/198 (1%)

Query: 1   MAMSVSIVAVVTALHLIAFVFAVGAERRRSTAKVVPDQYDEMTYCVYSTDASTVYGLSAF 60
           MA+SVSI+AV+T+LHLIAFV A+GAERRRSTAKVVPDQYDE TYCVY TDASTVYGL+AF
Sbjct: 1   MAVSVSILAVITSLHLIAFVLAIGAERRRSTAKVVPDQYDERTYCVYDTDASTVYGLAAF 60

Query: 61  GLLLISQAVVNGVTRCLCFGKGLVTGTSSTTWAVFFFIVSWVSFLGAEACLLAGSARNAY 120
           GL+LISQ ++NGVTRCLCFGKGLVTG+ STT A+ FFI SW+SFLGAEACLLAGSARNAY
Sbjct: 61  GLILISQMILNGVTRCLCFGKGLVTGSCSTTCAIIFFIFSWLSFLGAEACLLAGSARNAY 120

Query: 121 HTKYRKIFGGGDLSCATLRKGVFAAGAALTLLSLAGSILYYWAHTRADTGGWEKHRNEGL 180
           HTKYR +F  G+LSCATLRKGVFAAGAALTLLSL GSILYY+AH+RADTGGWEKH+N G+
Sbjct: 121 HTKYRGLFNQGELSCATLRKGVFAAGAALTLLSLIGSILYYFAHSRADTGGWEKHQNVGV 180

Query: 181 GM---AMQQQQPGNDFEK 195
           GM   +  QQQ  ++FEK
Sbjct: 181 GMTSASYPQQQQTSEFEK 198

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224099405|ref|XP_002311471.1| predicted protein [Populus trichocarpa] gi|222851291|gb|EEE88838.1| predicted protein [Populus trichocarpa]

 Score =  302 bits (773), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 145/169 (85%), Positives = 156/169 (92%)

Query: 14  LHLIAFVFAVGAERRRSTAKVVPDQYDEMTYCVYSTDASTVYGLSAFGLLLISQAVVNGV 73
           LHL+AFV A+GAE RRSTAKVVPDQYDE TYCVY TDASTVYGL+AFGLLLISQ +VNGV
Sbjct: 11  LHLVAFVLAIGAESRRSTAKVVPDQYDESTYCVYDTDASTVYGLAAFGLLLISQMIVNGV 70

Query: 74  TRCLCFGKGLVTGTSSTTWAVFFFIVSWVSFLGAEACLLAGSARNAYHTKYRKIFGGGDL 133
           TRCLCFGKGLVTG+ STT A+ FFIVSW+SFLGAEACLLAGSARNAYHTKYR  F  GDL
Sbjct: 71  TRCLCFGKGLVTGSCSTTCAIIFFIVSWLSFLGAEACLLAGSARNAYHTKYRGFFRQGDL 130

Query: 134 SCATLRKGVFAAGAALTLLSLAGSILYYWAHTRADTGGWEKHRNEGLGM 182
           SCATLR+GVFAAGAALTLLSL GSILYYWAH+RADTGGWEKH+NEG+GM
Sbjct: 131 SCATLRRGVFAAGAALTLLSLIGSILYYWAHSRADTGGWEKHQNEGVGM 179

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424071|ref|XP_002282799.1| PREDICTED: uncharacterized protein LOC100249231 [Vitis vinifera] gi|147792362|emb|CAN76984.1| hypothetical protein VITISV_027945 [Vitis vinifera] gi|297737776|emb|CBI26977.3| unnamed protein product [Vitis vinifera]

 Score =  298 bits (764), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 158/195 (81%), Positives = 177/195 (90%), Gaps = 3/195 (1%)

Query: 1   MAMSVSIVAVVTALHLIAFVFAVGAERRRSTAKVVPDQYDEMTYCVYSTDASTVYGLSAF 60
           MA+SVS++A++ +LHLIAFV AVG+ERRRSTAKVVPD+YDE TYCVYSTDASTVYGL+AF
Sbjct: 1   MAVSVSLMAIIISLHLIAFVLAVGSERRRSTAKVVPDKYDERTYCVYSTDASTVYGLTAF 60

Query: 61  GLLLISQAVVNGVTRCLCFGKGLVTGTSSTTWAVFFFIVSWVSFLGAEACLLAGSARNAY 120
           GLLLISQ V+NGVT+CLCFG+GL+ G  STT AVFFFI SWVSFLGAEACLLAGSA+NAY
Sbjct: 61  GLLLISQTVLNGVTKCLCFGRGLIGG-GSTTCAVFFFIFSWVSFLGAEACLLAGSAKNAY 119

Query: 121 HTKYRKIFGGGDLSCATLRKGVFAAGAALTLLSLAGSILYYWAHTRADTGGWEKHRNEGL 180
           HTKYR +FGG DLSCATLRKGVFAAGAAL+LLSL GSILYYWAH+RADTGGWEKHR+EGL
Sbjct: 120 HTKYRGVFGGQDLSCATLRKGVFAAGAALSLLSLLGSILYYWAHSRADTGGWEKHRSEGL 179

Query: 181 GMAMQQQQPGNDFEK 195
           GM  QQQ   N+F K
Sbjct: 180 GMTQQQQN--NEFGK 192

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297838579|ref|XP_002887171.1| hypothetical protein ARALYDRAFT_475940 [Arabidopsis lyrata subsp. lyrata] gi|297333012|gb|EFH63430.1| hypothetical protein ARALYDRAFT_475940 [Arabidopsis lyrata subsp. lyrata]

 Score =  291 bits (746), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 140/200 (70%), Positives = 165/200 (82%), Gaps = 5/200 (2%)

Query: 1   MAMSVSIVAVVTALHLIAFVFAVGAERRRSTAKVVPDQYDEMTYCVYSTDASTVYGLSAF 60
           MA+SVSI+ VVTALHL+AFVFA GAERRRSTA  VPDQYDE T+C Y T+ASTVYG+SAF
Sbjct: 1   MAVSVSILTVVTALHLLAFVFAFGAERRRSTAVPVPDQYDEKTFCKYGTEASTVYGMSAF 60

Query: 61  GLLLISQAVVNGVTRCLCFGKGLVTGTSSTTWAVFFFIVSWVSFLGAEACLLAGSARNAY 120
           GLLL+SQA+VNGVT+CLCFGKGLVTGTS T WA+ FF+VSW+SFLGAEACLLAGSARNAY
Sbjct: 61  GLLLVSQALVNGVTKCLCFGKGLVTGTSYTVWAIVFFVVSWISFLGAEACLLAGSARNAY 120

Query: 121 HTKYRKIFGGGDLSCATLRKGVFAAGAALTLLSLAGSILYYWAHTRADTGGWEKHRNEGL 180
           HTK   I+ G ++SCA L  GVFAAGAA TL+SL  +ILYY AH++ADTGGWEKH+N+G+
Sbjct: 121 HTKSEGIYKGKEISCAVLPVGVFAAGAAFTLMSLIATILYYLAHSKADTGGWEKHQNDGI 180

Query: 181 GMAMQ-----QQQPGNDFEK 195
            + M       +Q   +F K
Sbjct: 181 NIGMTTPSDAPKQQNTEFNK 200

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18408976|ref|NP_564925.1| uncharacterized protein [Arabidopsis thaliana] gi|12325326|gb|AAG52607.1|AC016447_16 unknown protein; 73543-72303 [Arabidopsis thaliana] gi|14596227|gb|AAK68841.1| Unknown protein [Arabidopsis thaliana] gi|18377450|gb|AAL66891.1| unknown protein [Arabidopsis thaliana] gi|21592439|gb|AAM64390.1| unknown [Arabidopsis thaliana] gi|332196645|gb|AEE34766.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  291 bits (745), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 142/200 (71%), Positives = 163/200 (81%), Gaps = 5/200 (2%)

Query: 1   MAMSVSIVAVVTALHLIAFVFAVGAERRRSTAKVVPDQYDEMTYCVYSTDASTVYGLSAF 60
           MA+SVSI+ VVTALHL+AFVFA GAERRRSTA  VPDQYDE T C Y T+ASTVYG+SAF
Sbjct: 1   MAVSVSILTVVTALHLLAFVFAFGAERRRSTAVPVPDQYDEKTICKYGTEASTVYGMSAF 60

Query: 61  GLLLISQAVVNGVTRCLCFGKGLVTGTSSTTWAVFFFIVSWVSFLGAEACLLAGSARNAY 120
           GLLL+SQAVVNGVT+CLCFGKGLVTGTS T WA+ FF+VSWVSFLGAEACLL GSARNAY
Sbjct: 61  GLLLVSQAVVNGVTKCLCFGKGLVTGTSYTVWAIVFFVVSWVSFLGAEACLLGGSARNAY 120

Query: 121 HTKYRKIFGGGDLSCATLRKGVFAAGAALTLLSLAGSILYYWAHTRADTGGWEKHRNEGL 180
           HTK   I+ G +LSCA L  GVFAAGAA TL+SL  +ILYY AH++ADTGGWEKH+N+G+
Sbjct: 121 HTKSEGIYKGKELSCAVLPVGVFAAGAAFTLMSLIATILYYLAHSKADTGGWEKHQNDGI 180

Query: 181 GMAMQ-----QQQPGNDFEK 195
            + M       +Q   +F K
Sbjct: 181 NIGMTTPSDAPKQQNTEFNK 200

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388501328|gb|AFK38730.1| unknown [Medicago truncatula]

 Score =  285 bits (730), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 136/192 (70%), Positives = 160/192 (83%), Gaps = 1/192 (0%)

Query: 1   MAMSVSIVAVVTALHLIAFVFAVGAERRRSTAKVVPDQYDEMTYCVYSTDASTVYGLSAF 60
           M +SV+I+ ++ +LHL+AFVFA+GAERRRS AKVVPD+YDE T+CVY+TDASTVYG++AF
Sbjct: 1   MGVSVTIIVLIISLHLLAFVFAIGAERRRSEAKVVPDEYDERTFCVYTTDASTVYGVAAF 60

Query: 61  GLLLISQAVVNGVTRCLCFGKGLVTGTSSTTWAVFFFIVSWVSFLGAEACLLAGSARNAY 120
            LLL+SQ V+N VTRCLC GKGL++G  STT AV FFI+SW  FL AEACLLAGSARNAY
Sbjct: 61  SLLLLSQTVLNAVTRCLCCGKGLISG-CSTTCAVIFFILSWTGFLAAEACLLAGSARNAY 119

Query: 121 HTKYRKIFGGGDLSCATLRKGVFAAGAALTLLSLAGSILYYWAHTRADTGGWEKHRNEGL 180
           HTKYR  F   DLSCATLRKGVFAAGAALTL S+  SILYYWAH +ADTG WEKH+NEG+
Sbjct: 120 HTKYRGNFVAHDLSCATLRKGVFAAGAALTLFSMLASILYYWAHAKADTGFWEKHQNEGI 179

Query: 181 GMAMQQQQPGND 192
           G+A     P +D
Sbjct: 180 GLATHNHGPESD 191

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575582|ref|XP_003555918.1| PREDICTED: uncharacterized protein LOC100781729 [Glycine max]

 Score =  278 bits (710), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 143/197 (72%), Positives = 167/197 (84%), Gaps = 2/197 (1%)

Query: 1   MAMSVSIVAVVTALHLIAFVFAVGAERRRSTAKVVPDQYDEMTYCVYSTDASTVYGLSAF 60
           MA+SV+I+ ++ ALHLIAFVFA+GAERRRS AKVVPD+YD+ T+CVY+TDAS+VYGL+A 
Sbjct: 1   MAVSVTILVLIIALHLIAFVFAIGAERRRSEAKVVPDEYDDRTFCVYTTDASSVYGLAAV 60

Query: 61  GLLLISQAVVNGVTRCLCFGKGLVTGTSSTTWAVFFFIVSWVSFLGAEACLLAGSARNAY 120
            LLL+S  V+NGVTRCLC GKGLV+G S+T  AVF FI+SW+SFL AEACLLAGSARNAY
Sbjct: 61  ALLLLSHTVLNGVTRCLCCGKGLVSGCSATC-AVFSFILSWISFLAAEACLLAGSARNAY 119

Query: 121 HTKYRKIFGGGDLSCATLRKGVFAAGAALTLLSLAGSILYYWAHTRADTGGWEKHRNEGL 180
           HTKYR  F   DLSCATLRKGVFAAGAALTLLS+  +ILYYWAH++ADTG WEKHRNEGL
Sbjct: 120 HTKYRGYFVKHDLSCATLRKGVFAAGAALTLLSMLTAILYYWAHSKADTGFWEKHRNEGL 179

Query: 181 GMAMQ-QQQPGNDFEKA 196
           G+A Q     G D +KA
Sbjct: 180 GLATQHHHHQGPDSDKA 196

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536286|ref|XP_003536670.1| PREDICTED: uncharacterized protein LOC100808582 [Glycine max]

 Score =  277 bits (708), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 143/196 (72%), Positives = 165/196 (84%), Gaps = 1/196 (0%)

Query: 1   MAMSVSIVAVVTALHLIAFVFAVGAERRRSTAKVVPDQYDEMTYCVYSTDASTVYGLSAF 60
           MA+SV+I+ ++ ALHLIAFVFAVGAERRRS AKVVPD+YD+ T+C Y+TDASTVYGLSA 
Sbjct: 1   MAVSVTILVLIIALHLIAFVFAVGAERRRSEAKVVPDEYDDQTFCHYTTDASTVYGLSAV 60

Query: 61  GLLLISQAVVNGVTRCLCFGKGLVTGTSSTTWAVFFFIVSWVSFLGAEACLLAGSARNAY 120
            LLL+S  V+NGVTRCLC GKGLV+G S+T+ AV  FI+SW+SFL AEACLLAGSARNAY
Sbjct: 61  ALLLLSHTVLNGVTRCLCCGKGLVSGCSATS-AVISFILSWISFLAAEACLLAGSARNAY 119

Query: 121 HTKYRKIFGGGDLSCATLRKGVFAAGAALTLLSLAGSILYYWAHTRADTGGWEKHRNEGL 180
           HTKYR  F   DLSCATLRKGVFAAGAALTLLS+  +ILYYWAH++ADTG WEKH NEGL
Sbjct: 120 HTKYRGYFVNHDLSCATLRKGVFAAGAALTLLSMLTAILYYWAHSKADTGFWEKHHNEGL 179

Query: 181 GMAMQQQQPGNDFEKA 196
           G+A Q    G D +KA
Sbjct: 180 GLATQHHHQGPDSDKA 195

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458763|ref|XP_004147116.1| PREDICTED: uncharacterized protein LOC101217379 [Cucumis sativus] gi|449520990|ref|XP_004167515.1| PREDICTED: uncharacterized LOC101217379 [Cucumis sativus]

 Score =  251 bits (642), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 131/199 (65%), Positives = 153/199 (76%), Gaps = 5/199 (2%)

Query: 1   MAMSVSIVAVVTALHLIAFVFAVGAERRRSTAKVVPDQYDEMTYCVYSTDASTVYGLSAF 60
           MA S+ ++ ++ +LHLIAFVFA+GAE RRSTA VVPD+YDE TYCVY +DASTVYGL AF
Sbjct: 1   MATSLFVIVIIASLHLIAFVFAIGAEMRRSTAAVVPDKYDETTYCVYDSDASTVYGLVAF 60

Query: 61  GLLLISQAVVNGVTRCLCFGKGLVTGTSSTTWAVFFFIVSWVSFLGAEACLLAGSARNAY 120
           GLLLISQ V+  VTRCLC GKGL +G  ST  AV FFI+SW  FLGAE+ LLAGS RNAY
Sbjct: 61  GLLLISQTVLMVVTRCLCCGKGLRSG-GSTVCAVIFFIISWHLFLGAESLLLAGSVRNAY 119

Query: 121 HTKYRKIFGGGDLSCATLRKGVFAAGAALTLLSLAGSILYYWAHTRADTGGWEKHRNEGL 180
           HTKYR +    +LSCA LR+GVFAA AALT LSL  SILYY  H+RADTGGW+KH+NEG+
Sbjct: 120 HTKYRSVLPLNNLSCAMLRRGVFAAAAALTFLSLVFSILYYSMHSRADTGGWQKHQNEGI 179

Query: 181 GMA----MQQQQPGNDFEK 195
           GM      QQ+Q     E+
Sbjct: 180 GMGPSNLPQQEQHERRAEE 198

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|371721838|gb|AEX55242.1| unknown [Allium sativum]

 Score =  234 bits (598), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 119/196 (60%), Positives = 153/196 (78%), Gaps = 5/196 (2%)

Query: 1   MAMSVSIVAVVTALHLIAFVFAVGAERRRSTAKVVPDQYDEMTYCVYSTDASTVYGLSAF 60
           M +S+ +VAV+ +LH++AFV A+GAE+RRST KV PD+YD+ TYCVY TDASTVYGLSAF
Sbjct: 1   MGVSLPLVAVICSLHIMAFVLAIGAEKRRSTGKVQPDEYDDRTYCVYDTDASTVYGLSAF 60

Query: 61  GLLLISQAVVNGVTRCLCFGKGLVTGTSSTTWAVFFFIVSWVSFLGAEACLLAGSARNAY 120
            L+L+SQ  VNGVTRCLCFGK ++   +S   AV FFI+SW+SF+ AEACL+AGSARNAY
Sbjct: 61  MLVLVSQVAVNGVTRCLCFGKRVLASGASKKCAVLFFIISWLSFIVAEACLIAGSARNAY 120

Query: 121 HTKYRKIFGGGDL-SCATLRKGVFAAGAALTLLSLAGSILYYWAHTRADTGGWEKHRNEG 179
           HTKY   +   DL SCATLRKGVFAA AA+ L+SL   + YY ++ +ADTGGW KH+N+ 
Sbjct: 121 HTKYVGYYAKKDLSSCATLRKGVFAASAAMILISLISLLSYYHSYAKADTGGWVKHQNDS 180

Query: 180 -LGM---AMQQQQPGN 191
            +GM   A ++++ GN
Sbjct: 181 EVGMAEHAPEKREYGN 196

Source: Allium sativum

Species: Allium sativum

Genus: Allium

Family: Amaryllidaceae

Order: Asparagales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	196
TAIR|locus:2199332	201	AT1G68220 "AT1G68220" [Arabido	0.938	0.915	0.695	1.7e-66
TAIR|locus:2009922	188	AT1G13380 "AT1G13380" [Arabido	0.816	0.851	0.420	1.1e-32
TAIR|locus:505006194	180	AT1G61065 "AT1G61065" [Arabido	0.897	0.977	0.422	7.7e-32
TAIR|locus:505006522	173	AT4G27435 "AT4G27435" [Arabido	0.836	0.947	0.469	2e-31
TAIR|locus:2011556	175	AT1G52910 "AT1G52910" [Arabido	0.857	0.96	0.423	5.4e-31
TAIR|locus:2090156	175	AT3G15480 "AT3G15480" [Arabido	0.816	0.914	0.444	8.8e-31
TAIR|locus:2167200	209	AT5G17210 "AT5G17210" [Arabido	0.923	0.866	0.264	2.2e-11

TAIR|locus:2199332 AT1G68220 "AT1G68220" [Arabidopsis thaliana (taxid:3702)]

 Score = 676 (243.0 bits), Expect = 1.7e-66, P = 1.7e-66
 Identities = 128/184 (69%), Positives = 145/184 (78%)

Query:     1 MAMSVSIVAVVTALHLIAFVFAVGAERRRSTAKVVPDQYDEMTYCVYSTDASTVYGLSAF 60
             MA+SVSI+ VVTALHL+AFVFA GAERRRSTA  VPDQYDE T C Y T+ASTVYG+SAF
Sbjct:     1 MAVSVSILTVVTALHLLAFVFAFGAERRRSTAVPVPDQYDEKTICKYGTEASTVYGMSAF 60

Query:    61 GLLLISQAVVNGVTRCLCFGKGLVTGTSSTTWAVFFFIVSWVSFLGAEACLLAGSARNAY 120
             GLLL+SQAVVNGVT+CLCFGKGLVTGTS T WA+ FF+VSWVSFLGAEACLL GSARNAY
Sbjct:    61 GLLLVSQAVVNGVTKCLCFGKGLVTGTSYTVWAIVFFVVSWVSFLGAEACLLGGSARNAY 120

Query:   121 HTKYRKIFGGGDLSCATLRKGVFXXXXXXXXXXXXXXXXYYWAHTRADTGGWEKHRNEGL 180
             HTK   I+ G +LSCA L  GVF                YY AH++ADTGGWEKH+N+G+
Sbjct:   121 HTKSEGIYKGKELSCAVLPVGVFAAGAAFTLMSLIATILYYLAHSKADTGGWEKHQNDGI 180

Query:   181 GMAM 184
              + M
Sbjct:   181 NIGM 184

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2009922 AT1G13380 "AT1G13380" [Arabidopsis thaliana (taxid:3702)]

 Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
 Identities = 69/164 (42%), Positives = 99/164 (60%)

Query:     4 SVSIVAVVTALHLIAFVFAVGAERRRSTAKVVPDQYDEMTYCVYSTDASTVYGLSAFGLL 63
             S  +  +V AL L+AF F++ AERRRS  K + D     T+CVY +D +T YG+ AF  L
Sbjct:     7 STLVFILVVALSLVAFGFSIAAERRRSIGKSIQDPITNTTFCVYDSDVATGYGVGAFLFL 66

Query:    64 LISQAVVNGVTRCLCFGKGLVTGTSSTTWAVFFFIVSWVSFLGAEACLLAGSARNAYHTK 123
             L S++++  VT+C+CFG+ L  G S   W++ +FI SW++FL AEAC++AG+ +NAYHTK
Sbjct:    67 LSSESLLMSVTKCMCFGRPLAPG-SDRAWSIIYFISSWMTFLVAEACVIAGATKNAYHTK 125

Query:   124 YRKIFGGGDLSCATLRKGVFXXXXXXXXXXXXXXXXYYWAHTRA 167
             Y         SCA+LRKG+F                YY   T++
Sbjct:   126 Y---LSSQTFSCASLRKGIFIAGAVFIVATMVLNVYYYMYFTKS 166

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:505006194 AT1G61065 "AT1G61065" [Arabidopsis thaliana (taxid:3702)]

 Score = 349 (127.9 bits), Expect = 7.7e-32, P = 7.7e-32
 Identities = 76/180 (42%), Positives = 106/180 (58%)

Query:     4 SVSIVAVVTALHLIAFVFAVGAERRRSTAKVVPDQYDEMTYCVYSTDASTVYGLSAFGLL 63
             SV ++ +V    LIAF  AV AE+RR+T ++  +  D ++YCVY  D +T  G+ +F +L
Sbjct:     3 SVLLLLLVFVFDLIAFGLAVAAEQRRTTWQISRESRD-LSYCVYDKDIATGLGVGSFLVL 61

Query:    64 LISQAVVNGVTRCLCFGKGLVTGTSSTTWAVFFFIVSWVSFLGAEACLLAGSARNAYHTK 123
             L SQ ++   +RCLC G+ L T + S +WA+F FI +WV F  A+ CLLAGS RNAYHTK
Sbjct:    62 LASQLLIMVASRCLCCGRAL-TPSGSRSWAIFLFITTWVFFFIAQVCLLAGSVRNAYHTK 120

Query:   124 YRKIFGGGDLSCATLRKGVFXXXXXXXXXXXXXXXXYYWAHTRADTGGWEKHRNEGLGMA 183
             YR  FG    SC +LRKGVF                YY   +RA    ++  R+ G+ M+
Sbjct:   121 YRVYFGNTSPSCRSLRKGVFGAGAAFIVLTGIVSELYYVTLSRAKD--FQPSRDPGIRMS 178

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:505006522 AT4G27435 "AT4G27435" [Arabidopsis thaliana (taxid:3702)]

 Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
 Identities = 78/166 (46%), Positives = 96/166 (57%)

Query:     3 MSVSIV-AVVTALHLIAFVFAVGAERRRSTAKVVPDQYDEMTYCVYSTDASTVYGLSAFG 61
             M+  IV A+V   +LIAF  AV AE+RRSTA+VV D   +  YCVY +D +T YG+ AF 
Sbjct:     1 MASKIVSAIVFVFNLIAFGLAVAAEQRRSTARVVQDTEVQYNYCVYDSDRATGYGVGAFL 60

Query:    62 LLLISQAVVNGVTRCLCFGKGLVTGTSSTTWAVFFFIVSWVSFLGAEACLLAGSARNAYH 121
               + SQ ++  V+RC C GK L  G  S   A+  FIVSW+ FL AE CLLAGS  NAYH
Sbjct:    61 FSVASQILIMLVSRCFCCGKPLKPG-GSRALALILFIVSWMFFLIAEICLLAGSVENAYH 119

Query:   122 TKYRKIFGGGDLSCATLRKGVFXXXXXXXXXXXXXXXXYYWAHTRA 167
             TKYR +F      C TLRKGVF                YY+ +  A
Sbjct:   120 TKYRTMFMDNPPDCQTLRKGVFAAGASFVFFNAIVSQFYYFFYFSA 165

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2011556 AT1G52910 "AT1G52910" [Arabidopsis thaliana (taxid:3702)]

 Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
 Identities = 72/170 (42%), Positives = 93/170 (54%)

Query:     7 IVAVVTALHLIAFVFAVGAERRRSTAKVVPDQYDEMTYCVYSTDASTVYGLSAFGLLLIS 66
             ++ +V  L LIA   A+ AE+RRS  KVVPD   E  +C Y +D +T YG  AF LL IS
Sbjct:     6 VIIIVFILDLIAVGLAIAAEQRRSVGKVVPDGEKEFEHCEYGSDIATSYGAGAFVLLFIS 65

Query:    67 QAVVNGVTRCLCFGKGLVTGTSSTTWAVFFFIVSWVSFLGAEACLLAGSARNAYHTKYRK 126
             Q ++   +RC C GK L  G  S    +  F++ WV FL AE CLLAGS RNAYHT YR+
Sbjct:    66 QVIIMVASRCFCCGKALKPG-GSRACGIMLFLICWVFFLIAEVCLLAGSIRNAYHTTYRR 124

Query:   127 IFG-GGDLSCATLRKGVFXXXXXXXXXXXXXXXXYYWAHTRADTGGWEKH 175
             ++      SC  +RKGVF                YY +++RA  G    H
Sbjct:   125 MWNIENPPSCEVIRKGVFAAGASFALFTAIVSQFYYISYSRARDGYQTPH 174

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2090156 AT3G15480 "AT3G15480" [Arabidopsis thaliana (taxid:3702)]

 Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
 Identities = 72/162 (44%), Positives = 92/162 (56%)

Query:     7 IVAVVTALHLIAFVFAVGAERRRSTAKVVPDQYDEMTYCVYSTDASTVYGLSAFGLLLIS 66
             +V +V  L LIA   A+ AE+RRS  KV  D+  +  YCVY TD +T YG  AF LL +S
Sbjct:     6 VVIIVFILDLIAVGLAIAAEQRRSVGKVETDRDKQYDYCVYGTDIATSYGAGAFVLLFVS 65

Query:    67 QAVVNGVTRCLCFGKGLVTGTSSTTWAVFFFIVSWVSFLGAEACLLAGSARNAYHTKYRK 126
             Q ++   +RC C GK L  G  S   A+  F++ WV FL AE CLLA S RNAYHT+YRK
Sbjct:    66 QVLIMAASRCFCCGKSLNPG-GSRACAIILFLICWVFFLIAEMCLLAASIRNAYHTQYRK 124

Query:   127 IFGGGDL-SCATLRKGVFXXXXXXXXXXXXXXXXYYWAHTRA 167
             ++   D  SC  +RKGVF                YY  ++RA
Sbjct:   125 MWKVEDPPSCEVIRKGVFAAGAAFTLFTAIVSQFYYVCYSRA 166

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2167200 AT5G17210 "AT5G17210" [Arabidopsis thaliana (taxid:3702)]

 Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
 Identities = 49/185 (26%), Positives = 82/185 (44%)

Query:     5 VSIVAVVTALHLIAFVFAVGAERRR-STAKVVPDQYDEMTYCVYSTDASTVYGLSAFGLL 63
             + +  V+  L L++ V A  AE  R   ++V     D +T C Y    +   G ++   L
Sbjct:     6 IVMCGVLFLLGLLSAVTAFVAEATRIKRSQVTVTVSDSITKCTYPRSPAFNLGFTSALFL 65

Query:    64 LISQAVVNGVTRCLCFGKGLVTGTSSTTWAVFFFIVSWVSFLGAEACLLAGSARNAYHTK 123
             +++Q +V+  + C C  KG     S+   ++  F+VSW +F+ A   LL+G+A N  HT+
Sbjct:    66 MMAQIIVSVSSGCFCCRKGPAPSRSNWIISLICFVVSWFTFVIAFLVLLSGAALNDEHTE 125

Query:   124 YRKIFGGGDLSCATLRKGVFXXXXXXXXXXXXXXXXYYWAHTRADTGGWEKHRNEGLGMA 183
               +    G   C  ++ GVF                YY   T ++         +G G+A
Sbjct:   126 --ESMNAGTYFCYIVKPGVFSTGAVLSLVTIALGIVYYLCLT-SNKQIVAATTTQGTGIA 182

Query:   184 MQQQQ 188
             M Q Q
Sbjct:   183 MGQPQ 187


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.135   0.421    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      196       180   0.00092  109 3  11 22  0.36    32
                                                     31  0.39    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  593 (63 KB)
  Total size of DFA:  166 KB (2098 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.69u 0.11s 12.80t   Elapsed:  00:00:00
  Total cpu time:  12.69u 0.11s 12.80t   Elapsed:  00:00:00
  Start:  Fri May 10 13:27:46 2013   End:  Fri May 10 13:27:46 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0006029602 hypothetical protein (200 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	196
pfam06749	97	pfam06749, DUF1218, Protein of unknown function (D	1e-27

>gnl|CDD|219160 pfam06749, DUF1218, Protein of unknown function (DUF1218)

 Score =  100 bits (250), Expect = 1e-27
 Identities = 47/98 (47%), Positives = 59/98 (60%), Gaps = 4/98 (4%)

Query: 59  AFGLLLISQAVVNGVTRCLCFGKGLVTG-TSSTTWAVFFFIVSWVSFLGAEACLLAGSAR 117
           A   L ++Q V N V  C C GK L          AV  F++SW++F+ A A LLAG+AR
Sbjct: 2   AAVFLAVAQVVGNVVGGCCCCGKALPPKSGRKRALAVVCFVLSWIAFVIAFALLLAGAAR 61

Query: 118 NAYHTKYRKIFGGGDLSCATLRKGVFAAGAALTLLSLA 155
           NAYHT+Y   F     SC TL+KGVFAAGA L+LL+  
Sbjct: 62  NAYHTRYNVHF---RPSCYTLKKGVFAAGAVLSLLAAL 96

This family contains hypothetical plant proteins of unknown function. Family members contain a number of conserved cysteine residues. Length = 97

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	196
PF06749	97	DUF1218: Protein of unknown function (DUF1218); In	99.96
cd07912	418	Tweety_N N-terminal domain of the protein encoded	91.2
PF05478	806	Prominin: Prominin; InterPro: IPR008795 The promin	87.19
PF07344	155	Amastin: Amastin surface glycoprotein; InterPro: I	85.71
PTZ00201	192	amastin surface glycoprotein; Provisional	83.79
KOG4016	233	consensus Synaptic vesicle protein Synaptogyrin in	82.42
PF04906	406	Tweety: Tweety; InterPro: IPR006990 None of the me	80.13

>PF06749 DUF1218: Protein of unknown function (DUF1218); InterPro: IPR009606 This family contains hypothetical plant proteins of unknown function

Probab=99.96  E-value=5e-30  Score=192.59  Aligned_cols=96  Identities=45%  Similarity=0.688  Sum_probs=89.2

Q ss_pred             HHHHHHHHHHHHHHHHhccccccCCCCC-CCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccceecCCCccccc
Q 029284           58 SAFGLLLISQAVVNGVTRCLCFGKGLVT-GTSSTTWAVFFFIVSWVSFLGAEACLLAGSARNAYHTKYRKIFGGGDLSCA  136 (196)
Q Consensus        58 ~A~~~Ll~aqii~~~a~~C~cc~~~~~~-~~~~r~~ai~~~i~SWi~f~iA~~lLl~Ga~~n~~~~~~~~~~~~~~~~C~  136 (196)
                      +|++||+++|+++|+++||.||+|+.+| +.++|+++++|+++||++|+||+++|++|+++|++|+|++.++   +++|+
T Consensus         1 ~A~~~L~~aqvi~~~~~gC~cc~~~~~~~~~~~r~~a~~~~v~SWi~f~ia~~~ll~ga~~n~~~~~~~~~~---~~~C~   77 (97)
T PF06749_consen    1 AAAVFLLAAQVIANVAGGCLCCGKRVSPKSSRNRTLAVVFFVLSWIVFIIAEALLLAGASMNARHTKGNGWF---NPSCY   77 (97)
T ss_pred             CHHHHHHHHHHHHHHHhcceEeCCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHhcccccccccccc---CCccc
Confidence            4899999999999999999999888766 4589999999999999999999999999999999999988664   78999


Q ss_pred             cccccchhhhHHHHHHHHHH
Q 029284          137 TLRKGVFAAGAALTLLSLAG  156 (196)
Q Consensus       137 ~~k~GvF~~aa~l~l~t~~~  156 (196)
                      ++|+|+|++||+|+|+|++|
T Consensus        78 ~~k~GvF~~~a~l~l~t~~f   97 (97)
T PF06749_consen   78 TVKKGVFAGGAVLSLVTALF   97 (97)
T ss_pred             ccCCceeeHhHHHHHHHHhC
Confidence            99999999999999999875

Family members contain a number of conserved cysteine residues.

>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels

Probab=91.20  E-value=1.1  Score=41.92  Aligned_cols=32  Identities=13%  Similarity=0.032  Sum_probs=19.1

Q ss_pred             hhHH-HHHHHHHHHHHHHHHHHHhccccccCCC
Q 029284           52 STVY-GLSAFGLLLISQAVVNGVTRCLCFGKGL   83 (196)
Q Consensus        52 A~~l-Gi~A~~~Ll~aqii~~~a~~C~cc~~~~   83 (196)
                      |+++ |..|++.+++.-++..+...|.||||+.
T Consensus        38 Sv~~~a~iaavwlil~ll~ll~~~~~~CCcr~~   70 (418)
T cd07912          38 SLLILASIPAACLILSLLFLLVYLITRCCDRKP   70 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence            5544 5566666666666666666666666553

The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.

>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology

Probab=87.19  E-value=2.8  Score=42.04  Aligned_cols=72  Identities=17%  Similarity=0.165  Sum_probs=43.3

Q ss_pred             eecCCChh-hHHHHHHHHHHHHHHHHHHHHhcccccc-CC-CCCCC-------CchH---HHHHHHHHHHHHHHHHHHHH
Q 029284           45 CVYSTDAS-TVYGLSAFGLLLISQAVVNGVTRCLCFG-KG-LVTGT-------SSTT---WAVFFFIVSWVSFLGAEACL  111 (196)
Q Consensus        45 C~Yps~~A-~~lGi~A~~~Ll~aqii~~~a~~C~cc~-~~-~~~~~-------~~r~---~ai~~~i~SWi~f~iA~~lL  111 (196)
                      -+|.++.- .+++++..++|++.-.+.-...|  ||| ++ ..|+.       +.+.   -..+.|+++|+..+++.+.|
T Consensus       407 ~~y~~yR~~~~lil~~~llLIv~~~~lGLl~G--~~G~~~~~~p~~r~c~~~tGg~~Lm~gv~~~Flf~~~l~l~~~~~F  484 (806)
T PF05478_consen  407 EKYDSYRWIVGLILCCVLLLIVLCLLLGLLCG--CCGYRRRADPTDRGCSSNTGGNFLMAGVGLSFLFSWFLMLLVLFYF  484 (806)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hccCCCCCCCcccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34544443 35566666666654444334444  455 22 22321       2222   25667899999999999999


Q ss_pred             HHHhhhc
Q 029284          112 LAGSARN  118 (196)
Q Consensus       112 l~Ga~~n  118 (196)
                      +.|....
T Consensus       485 l~G~~~~  491 (806)
T PF05478_consen  485 LVGGNTY  491 (806)
T ss_pred             HHHhhhh
Confidence            9999864

Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane

>PF07344 Amastin: Amastin surface glycoprotein; InterPro: IPR009944 This family contains the eukaryotic surface glycoprotein amastin (approximately 180 residues long)

Probab=85.71  E-value=7.3  Score=31.20  Aligned_cols=89  Identities=17%  Similarity=0.044  Sum_probs=58.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhhccceeeeccCCCCcceeecCCChhhHHHHHHHHHHHHHHHHHHHHhccccccCCCCC
Q 029284            6 SIVAVVTALHLIAFVFAVGAERRRSTAKVVPDQYDEMTYCVYSTDASTVYGLSAFGLLLISQAVVNGVTRCLCFGKGLVT   85 (196)
Q Consensus         6 ~v~~vv~~LgliAfiLgi~AE~~r~~~~~v~~~~~~~~~C~Yps~~A~~lGi~A~~~Ll~aqii~~~a~~C~cc~~~~~~   85 (196)
                      ...++.++++..|+++|+..=...+                ..+-+...|.+.+++++++.=++....=.=..|. +.++
T Consensus        67 afaIisi~~~~~a~v~g~~~l~~~~----------------~~r~v~l~L~~~~~~~~~v~wa~~v~~Y~~~~C~-~~~~  129 (155)
T PF07344_consen   67 AFAIISIFVYGAAFVLGVLLLCCCS----------------CLRWVCLVLNIVGIVTLLVVWALMVVVYYGGFCG-ALKS  129 (155)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCc-CccC
Confidence            5677888999999999998644432                2233567788888888877766555443333343 3222


Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHH
Q 029284           86 GTSSTTWAVFFFIVSWVSFLGAEACL  111 (196)
Q Consensus        86 ~~~~r~~ai~~~i~SWi~f~iA~~lL  111 (196)
                      ..-+=..+-.+++++|+..+++.+.|
T Consensus       130 ~~~~yg~GF~L~v~aw~l~~i~ii~L  155 (155)
T PF07344_consen  130 RGYKYGAGFALFVAAWCLDIINIIFL  155 (155)
T ss_pred             CCcccCccHHHHHHHHHHHHHHHHhC
Confidence            21133458889999999999887654

In Trypanosoma cruzi, amastin is particularly abundant during the amastigote stage.

>PTZ00201 amastin surface glycoprotein; Provisional

Probab=83.79  E-value=5.8  Score=33.43  Aligned_cols=96  Identities=14%  Similarity=0.086  Sum_probs=54.8

Q ss_pred             eeecCCCh---hhHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 029284           44 YCVYSTDA---STVYGLSAFGLLLISQAVVNGVTRCLCFGKGLVTGTSSTTWAVFFFIVSWVSFLGAEACLLAGSARNAY  120 (196)
Q Consensus        44 ~C~Yps~~---A~~lGi~A~~~Ll~aqii~~~a~~C~cc~~~~~~~~~~r~~ai~~~i~SWi~f~iA~~lLl~Ga~~n~~  120 (196)
                      +|...++.   |-++.+.|+++..+|-+++-....|+.         ..|++...+.+++     ++..+..|+.+.-.+
T Consensus        66 ~C~~rr~~Fr~aqAfaIISI~v~~aA~vlg~~~l~cc~---------~lr~vcl~Lnivg-----~vt~~VvWa~mv~~Y  131 (192)
T PTZ00201         66 NCPARILQFRVAQALAVISILVYGAAFVLGLVLLYGCT---------IHRWVCLALNIVG-----AVTLGVVWAAMVVTY  131 (192)
T ss_pred             hChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---------hHHHHHHHHHHHH-----HHHHheeeeeEEEEE
Confidence            35544433   667888999888888888777665421         2455555555544     233455667665544


Q ss_pred             ccccceecCCCccccccccc-c-chhhhHHHHHHHHHHHHHH
Q 029284          121 HTKYRKIFGGGDLSCATLRK-G-VFAAGAALTLLSLAGSILY  160 (196)
Q Consensus       121 ~~~~~~~~~~~~~~C~~~k~-G-vF~~aa~l~l~t~~~~i~y  160 (196)
                      +++       ..+.|+..|+ + -|+.|=.|-+++-.+.++-
T Consensus       132 ~~~-------~~~~C~~~~~~~~~yGaGF~Llv~AW~L~iin  166 (192)
T PTZ00201        132 YKD-------DGPLCPRVRDMGYRFGTGFALLVVAWILDILN  166 (192)
T ss_pred             EcC-------CCccccccccCCCCccCcHHHHHHHHHHHHHH
Confidence            432       2346887776 4 3555544444444444433

>KOG4016 consensus Synaptic vesicle protein Synaptogyrin involved in regulation of Ca2+-dependent exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=82.42  E-value=32  Score=29.76  Aligned_cols=114  Identities=16%  Similarity=0.176  Sum_probs=59.7

Q ss_pred             CCcceeecCCCh-hhHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCC--Cch-HHHHHHHHHHHHHHHHHHHHHHHHh
Q 029284           40 DEMTYCVYSTDA-STVYGLSAFGLLLISQAVVNGVTRCLCFGKGLVTGT--SST-TWAVFFFIVSWVSFLGAEACLLAGS  115 (196)
Q Consensus        40 ~~~~~C~Yps~~-A~~lGi~A~~~Ll~aqii~~~a~~C~cc~~~~~~~~--~~r-~~ai~~~i~SWi~f~iA~~lLl~Ga  115 (196)
                      .....|.|.+|+ |-.+|++.-++..++-+.-.+.--..-    +..+.  ++| .++-+-+-..|...-.---|+||- 
T Consensus        54 ~~~~~Ciynrn~~ACsyg~avG~~Afla~~~flvlD~~f~----qISsv~~RkraVl~Dl~~SalwtflwfvGFc~l~n-  128 (233)
T KOG4016|consen   54 SGEEFCIYNRNSNACSYGVAVGVLAFLACLAFLVLDVYFP----QISSVKDRKRAVLADLGVSALWAFLWFVGFCFLAN-  128 (233)
T ss_pred             CCceEEEECCCCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            356789999988 446666666666666555555433211    11222  333 345555555564433333455543 


Q ss_pred             hhcccccccceecCCCccccccccccchhhhHHHHHHHHHHHHHHHH-HHhhccC
Q 029284          116 ARNAYHTKYRKIFGGGDLSCATLRKGVFAAGAALTLLSLAGSILYYW-AHTRADT  169 (196)
Q Consensus       116 ~~n~~~~~~~~~~~~~~~~C~~~k~GvF~~aa~l~l~t~~~~i~yYv-~~~~a~~  169 (196)
                      -+.....|.           -.++.|==-+|-.++|++.+.|...=+ ..++=|+
T Consensus       129 qwqvs~p~~-----------~~~~a~saraaIafsffSilsW~~~A~lA~qR~~~  172 (233)
T KOG4016|consen  129 QWQVSKPKE-----------NPLGAGSARAAIAFSFFSILSWGGQAVLAFQRYRI  172 (233)
T ss_pred             HhhccCCCC-----------CCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            111111121           244555445666788999988876544 4444443

>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised

Probab=80.13  E-value=4.2  Score=37.72  Aligned_cols=31  Identities=16%  Similarity=0.071  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhccccccCCCCC
Q 029284           55 YGLSAFGLLLISQAVVNGVTRCLCFGKGLVT   85 (196)
Q Consensus        55 lGi~A~~~Ll~aqii~~~a~~C~cc~~~~~~   85 (196)
                      +|..+++.|.+.-+...+-.-|.||+|+.++
T Consensus        22 la~v~~~~l~l~Ll~ll~yl~~~CC~r~~~~   52 (406)
T PF04906_consen   22 LASVAAACLALSLLFLLIYLICRCCCRRPRE   52 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCc
Confidence            4566666777777766676777777766543

However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00